BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016219
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D +
Sbjct: 74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQ 227
+G+S+G+GF+LFK K + + + K+ ++ + A P
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPV------------ 181
Query: 228 HQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287
+KIFV + + +K+ +F +GE+E L +D T K
Sbjct: 182 --------------------KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 221
Query: 288 PKGFCLFVYKTVDAAKKALEEPHKN 312
+GFC +K + KK +E+ + N
Sbjct: 222 RRGFCFITFKEEEPVKKIMEKKYHN 246
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 240 HQQSEYTQR---KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVY 296
H ++ QR K+F+ + + + L +FSK+GE+ + L +D TG+ +GF ++
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 297 KTVDAAKKALEEPHKNFEGHILNCQRA 323
K ++ K +++ G +++ +RA
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 171 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 230 FKEEEPVKKIMEKKYHNVG--LSKCEI 254
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 32/202 (15%)
Query: 111 ENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK 170
E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D ++G+
Sbjct: 77 EGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 171 SKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQH 230
S+G+GF+LFK K + + + K+ ++ + A P
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPV--------------- 181
Query: 231 QHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290
+KIFV + + +K+ +F +GE+E L +D T K +G
Sbjct: 182 -----------------KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRG 224
Query: 291 FCLFVYKTVDAAKKALEEPHKN 312
FC +K + KK +E+ + N
Sbjct: 225 FCFITFKEEEPVKKIMEKKYHN 246
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 240 HQQSEYTQR---KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVY 296
H ++ QR K+F+ + + + L +FSK+GE+ + L +D TG+ +GF ++
Sbjct: 86 HTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 297 KTVDAAKKALEEPHKNFEGHILNCQRA 323
K ++ K +++ G +++ +RA
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 171 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 230 FKEEEPVKKIMEKKYHNVG--LSKCEI 254
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 35/197 (17%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK S K L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ ++ R+ I P A+ +KIF
Sbjct: 136 KEHRLDGRV-------IDPKKAMAMKKDPV--------------------------KKIF 162
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311
V + E +K+ +F ++GEIE L ID K +GF +K D KK LE+
Sbjct: 163 VGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFH 222
Query: 312 NFEGHILNCQRAIDGPK 328
G C+ + PK
Sbjct: 223 TVSGS--KCEIKVAQPK 237
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
DPV +KIFV GL + E + + F Q+GEIE + D K +G+ FI FK +
Sbjct: 156 DPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVK 214
Query: 187 KAL 189
K L
Sbjct: 215 KVL 217
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++G++ DC D +
Sbjct: 72 EEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPI 131
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQ 227
+G+S+G+GF+LFK K + + + K+ ++ + A P
Sbjct: 132 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPV------------ 179
Query: 228 HQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287
+KIFV + + +K+ +F +GE+E L +D T K
Sbjct: 180 --------------------KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 219
Query: 288 PKGFCLFVYKTVDAAKKALEEPHKN 312
+GFC +K + KK +E+ + N
Sbjct: 220 RRGFCFITFKEEEPVKKIMEKKYHN 244
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 240 HQQSEYTQR---KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVY 296
H ++ QR K+F+ + + + L +FSK+G++ + L +D TG+ +GF ++
Sbjct: 84 HTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF 143
Query: 297 KTVDAAKKALEEPHKNFEGHILNCQRA 323
K ++ K +++ G +++ +RA
Sbjct: 144 KESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 169 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 228 FKEEEPVKKIMEKKYHNVG--LSKCEI 252
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 131/319 (41%), Gaps = 59/319 (18%)
Query: 32 PIEEEEYEEEVEEEGEEEGEEEEEEEEEEEEEEEKADQKEDEEEEEKADQNDEED-DEPI 90
P +E E EE+E+ GE E +E EE + D++ +A+ N E+D +E
Sbjct: 38 PTKENEGYEELEKSGEAGAERTKENPFREEPGADFDRSGSDQQYSAEAEANQEDDLNETS 97
Query: 91 LSLLEPFSKDQLVNLLREAA----------------ENHRDVASRVRQVADED------P 128
+P S D L A EN + ++ED P
Sbjct: 98 QQAPDPSSYDIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSP 157
Query: 129 VHR---KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+R K+F+ GL W+T ++L D F+Q+GE+ DC + D +G+S+G+GF+ FK
Sbjct: 158 FNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK----- 212
Query: 186 RKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEY 245
K N + + + G P A Q +
Sbjct: 213 -------NPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK-------------------- 245
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
K+FV V + ++ FF+++G + + L +DK TG+P+GF Y+ A +
Sbjct: 246 -TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEAT 304
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ +P+ G + +RA
Sbjct: 305 MSQPYITIHGKPVEVKRAT 323
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV G+ D E + F Q+G + D + DK +G+ +G+GF+ ++ S + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
P I + + A TP + +H +HQH H + Y + +
Sbjct: 308 PYITIHGKPVEVKRA------TPKASLRDSHD---------RHQHGYHGNANPYYAQNM- 351
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286
N+ + P + ++ + + E + A G
Sbjct: 352 --NMYGGMTPAMMAQYYRQMQQYMEAMRNMPAAAG 384
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 38/214 (17%)
Query: 94 LEPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQ 153
L ++ LV+ L H++ D + K+F+ GL WDT + L + +
Sbjct: 3 LSEITRSTLVSTLSRLLRRHKESN------PDFFLIRSKMFIGGLSWDTSKKDLTEYLSR 56
Query: 154 YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATT 213
+GE+ DC D V+G+S+G+GF+LFK K L+ + K+ ++ I P
Sbjct: 57 FGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKL-------IDPKRA 109
Query: 214 PAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE 273
A+ Q + +K+FV + E +++ +F +GE
Sbjct: 110 KAL-------------------------QGKEPPKKVFVGGLSPETTEEQIKQYFGGFGE 144
Query: 274 IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
IE L +D T + +GFC Y + +K LE
Sbjct: 145 IENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 45/89 (50%)
Query: 235 QHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLF 294
+H++ + + K+F+ + + + L + S++GE+ + + D TG+ +GF
Sbjct: 21 RHKESNPDFFLIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFV 80
Query: 295 VYKTVDAAKKALEEPHKNFEGHILNCQRA 323
++K + K LE +G +++ +RA
Sbjct: 81 LFKDAVSVDKVLETKEHKLDGKLIDPKRA 109
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV GL +T E + F +GEIE+ + D + + +G+ F+ + +K L+
Sbjct: 119 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
Query: 191 EPQKKIGN 198
+IG
Sbjct: 179 SRFHQIGT 186
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ K+ ++ I P A+ + + +K+F
Sbjct: 209 KEHKLDGKL-------IDPKRAKAL-------------------------KGKEPPKKVF 236
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
V + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 237 VGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L + S++GE+ + + D TG+ +GF ++K + K LE
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 309 PHKNFEGHILNCQRA 323
+G +++ +RA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV GL DT E + + F +GEIE+ + D + + +G+ FI + +K L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 191 EPQKKIGN 198
+IG+
Sbjct: 293 SRYHQIGS 300
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 32/176 (18%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK K L+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ K+ ++ + A P +K+F
Sbjct: 87 NEHKLDGKLIDPKRAKALKGKEPP--------------------------------KKVF 114
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
V + E +++ +F +GEIE L ID T + +GFC Y + KK LE
Sbjct: 115 VGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L + S++GE+ + + D TG+ +GF ++K + K LE
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 309 PHKNFEGHILNCQRA 323
+G +++ +RA
Sbjct: 87 NEHKLDGKLIDPKRA 101
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV GL +T E + F +GEIE+ + D + + +G+ F+ + +K L+
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 191 EPQKKIG 197
+IG
Sbjct: 171 SRFHQIG 177
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ K+ ++ + A P +K+F
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP--------------------------------KKVF 117
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310
V + + +++ +F +GEIE L +D T + +GFC Y + KK LE +
Sbjct: 118 VGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRY 176
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L + S++GE+ + + D TG+ +GF ++K + K LE
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 309 PHKNFEGHILNCQRA 323
+G +++ +RA
Sbjct: 90 KEHKLDGKLIDPKRA 104
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV GL DT E + + F +GEIE+ + D + + +G+ FI + +K L+
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 191 EPQKKIG 197
+IG
Sbjct: 174 SRYHQIG 180
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 36/198 (18%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + K L +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ ++ R+ I P A+ +KIF
Sbjct: 130 KEHRLDGRV-------IDPKKAMAMKKDPV--------------------------KKIF 156
Query: 252 VSNVGSELEP-QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310
V + E +K+ +F ++GEIE L +D K +GF +K + KK LE+
Sbjct: 157 VGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKF 216
Query: 311 KNFEGHILNCQRAIDGPK 328
G C+ + PK
Sbjct: 217 HTVSGS--KCEIKVAQPK 232
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 127 DPVHRKIFVHGLGWDTKAETLI-DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
DPV +KIFV GL ++ E I + F ++GEIE + D K +G+ FI FK
Sbjct: 150 DPV-KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 186 RKAL 189
+K L
Sbjct: 209 KKVL 212
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK + K L+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ K+ ++ I P A+ + + +K+F
Sbjct: 112 KEHKLDGKL-------IDPKRAKAL-------------------------KGKEPPKKVF 139
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
V + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 140 VGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L + S++GE+ + + D TG+ +GF ++K + K LE
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 309 PHKNFEGHILNCQRA 323
+G +++ +RA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV GL DT E + + F +GEIE+ + D + + +G+ FI + +K L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 191 EPQKKIGN 198
+IG+
Sbjct: 196 SRYHQIGS 203
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK + K L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ K+ ++ + A P +K+F
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPP--------------------------------KKVF 118
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310
V + + +++ +F +GEIE L +D T + +GFC Y + KK LE +
Sbjct: 119 VGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRY 177
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L + S++GE+ + + D TG+ +GF ++K + +K LE
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 309 PHKNFEGHILNCQRA 323
+G +++ +RA
Sbjct: 91 KEHKLDGKLIDPKRA 105
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV GL DT E + + F +GEIE+ + D + + +G+ FI + +K L+
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 191 EPQKKIGN 198
+IG+
Sbjct: 175 SRYHQIGS 182
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 32/176 (18%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK K L+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ K+ ++ + A P +K+F
Sbjct: 87 KEHKLDGKLIDPKRAKALKGKEPP--------------------------------KKVF 114
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
V + E +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 115 VGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L + S++GE+ + + D TG+ +GF ++K + K LE
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 309 PHKNFEGHILNCQRA 323
+G +++ +RA
Sbjct: 87 KEHKLDGKLIDPKRA 101
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV GL +T E + F +GEIE+ + D + + +G+ F+ + +K L+
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 191 EPQKKIG 197
+IG
Sbjct: 171 SRFHQIG 177
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 13/193 (6%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV G+ W+T + L + F YGE+ + DK++G+ +G+GF++F S + L+E
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ I R + A + + Q + + + + + +KIF
Sbjct: 67 -KHSIDTREVDVKRA------------MSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIF 113
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311
V + L ++ +F YG + + + D+AT +P+GF + + DA L +
Sbjct: 114 VGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH 173
Query: 312 NFEGHILNCQRAI 324
+ G + +RA+
Sbjct: 174 DLSGKQVEVKRAL 186
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306
Q K+FV + E + KL F+ YGE+ + + DK TG+P+GF ++ + L
Sbjct: 5 QGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL 64
Query: 307 EEPH 310
+E H
Sbjct: 65 QEKH 68
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
+KIFV GL E F+ YG + D + D+ + + +G+GF+ F +
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 30/203 (14%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK +F+ L + L D F +G I CK D+ +G SKGYGF+ ++T
Sbjct: 140 DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYET 198
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
A +A+K + N + H + Q +
Sbjct: 199 DEAASQAIKHVNGMLLNEKKV---------------------YVGHHIPKKDRQSKFDEM 237
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
++ +T I+V N+ E+ + F KYG++ L D+ TGK +GF + + +
Sbjct: 238 KANFT--NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHED 295
Query: 302 AKKALEEPH-KNFEGHILNCQRA 323
A KA++E + K F G L RA
Sbjct: 296 ASKAVQELNEKEFHGQNLYVGRA 318
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
I+V + + + F++YG++ D+ +GKS+G+GF+ F + A KA++E
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ + Q +G A +H+ + + + ++ + + S+Y ++
Sbjct: 303 ----LNEKEFHGQNLYVG---------RAQKKHEREEELRKSYEAARQEKASKYQGVNLY 349
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285
+ N+ E++ +KL FS++G I + D T
Sbjct: 350 IKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 34/194 (17%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
++V L L + F Q G + + D V+ +S GY ++ + T + KAL+E
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 193 QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252
+ + C++ + PA+ T Q +F+
Sbjct: 123 NYTL-IKGRPCRI--MWSQRDPALRKTG--------------------------QGNVFI 153
Query: 253 SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKN 312
N+ ++ + L F+ +G I + D+ G KG+ Y+T +AA +A+ K+
Sbjct: 154 KNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAI----KH 208
Query: 313 FEGHILNCQRAIDG 326
G +LN ++ G
Sbjct: 209 VNGMLLNEKKVYVG 222
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 28/192 (14%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL W T E+L D F +YG+I + + D + +S+G+GF+ F + K L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
TH+ + ++ H + +KIF
Sbjct: 90 ----------------------------GTHELDGKKVDPKVAFPRRAHPKMVTRTKKIF 121
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311
V + + + + ++F ++G IE+ L DK T + +GF +++ D K E
Sbjct: 122 VGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFH 181
Query: 312 NFEGHILNCQRA 323
++ C++A
Sbjct: 182 EINNKMVECKKA 193
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL T E + F+Q+G IED + DK + + +G+GF+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +GEIE+ + D+ +GKS+GYGF+ RS A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 DRACKDPNPIIDGRKANVNLAYLG 89
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 238 QHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297
H Q + T KIFV + L +F +GEIEE + D+ TGK +G+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 298 TVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA +A ++P+ +G N A G KP
Sbjct: 61 DRSAADRACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT-RSGARKALKE 191
+FV L W+ + L F++YG I + + D SG+SKGYG++ F+T +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
K+I RM L++ PA + + Q Q SE + +F
Sbjct: 325 GTKEIDGRMVNLDLSNPRPA--------------NPQPYAQQRAGNFGDQLSEPSD-TVF 369
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311
V N+ L F G+I+ L D +G+ KGF + +D+AKK +E
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE---- 425
Query: 312 NFEGHIL 318
GH +
Sbjct: 426 -MNGHFI 431
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 15/193 (7%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQ-RKI 250
+ R +I P T + + + + QQ ++E ++ KI
Sbjct: 71 RPHTLDGR-------NIDP-------KPCTPRGMQPERSRPREGWQQKEPRTENSRSNKI 116
Query: 251 FVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310
FV + +L +F+++G + E + D +P+GF ++ + +A+
Sbjct: 117 FVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 176
Query: 311 KNFEGHILNCQRA 323
+ G + +RA
Sbjct: 177 HDIMGKKVEVKRA 189
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 31/206 (15%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
++ DP RK IF+ L + L + F +GE+ CK D+ +G S+G+GF+
Sbjct: 126 SERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVH 184
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQ 238
FK S A+ A++ + N + + H + +
Sbjct: 185 FKEESDAKDAIEAVNGMLMNGLEV---------------------YVAMHVPKKDRISKL 223
Query: 239 HHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298
++ +T I+V N+ E ++ FS+YGEI L D A GKPKGF +
Sbjct: 224 EEAKANFT--NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVD 280
Query: 299 VDAAKKALEEPH-KNFEGHILNCQRA 323
+AA KA+EE + K F+ L RA
Sbjct: 281 HNAAAKAVEELNGKEFKSQALYVGRA 306
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 19/209 (9%)
Query: 102 LVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCK 161
L+N L H R+ ++ + I+V + +T E F QYGEI
Sbjct: 202 LMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSA- 260
Query: 162 AVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTAT 221
A+ GK KG+GF+ F + A KA++E + + Q +G A
Sbjct: 261 ALEKDAEGKPKGFGFVNFVDHNAAAKAVEE----LNGKEFKSQALYVGRA---------- 306
Query: 222 HQHQHQHQHQHQHQHQQHHQQ--SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPL 279
Q +++ + + Q++Q+ + +++ +F+ N+ ++ +KL F+ YG I +
Sbjct: 307 -QKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARV 365
Query: 280 GIDKATGKPKGFCLFVYKTVDAAKKALEE 308
D+ G KGF + + + A KA+ E
Sbjct: 366 MRDQ-EGNSKGFGFVCFSSPEEATKAMTE 393
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
+F+ L E L + F YG I + + D+ G SKG+GF+ F + A KA+ E
Sbjct: 335 NLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQ-EGNSKGFGFVCFSSPEEATKAMTE 393
Query: 192 PQKKI 196
++I
Sbjct: 394 KNQQI 398
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 96/192 (50%), Gaps = 27/192 (14%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+F+ L +TL + F +G+I K + D SKGY F+ F+ +S A +A++E
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 193 QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252
K+ + C++ +G + +++ + + + SE+T +++
Sbjct: 158 NGKL---LKGCKVF-VG-----------------RFKNRKDREAELRSKASEFTN--VYI 194
Query: 253 SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311
N G +++ ++L FSKYG+ + D ++GK KGF + + +AAKKA+EE + +
Sbjct: 195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGR 253
Query: 312 NFEGHILNCQRA 323
+ G ++ RA
Sbjct: 254 DINGQLIFVGRA 265
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 42/225 (18%)
Query: 111 ENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK 170
+N +D + +R A E +++ G D E L D F +YG+ K + D SGK
Sbjct: 173 KNRKDREAELRSKASE---FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGK 228
Query: 171 SKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQH 230
SKG+GF+ F + A+KA++E + R QL +G A Q +
Sbjct: 229 SKGFGFVSFDSHEAAKKAVEE----MNGRDINGQLIFVGRA---------------QKKV 269
Query: 231 QHQHQHQQHHQQSEYTQ------RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284
+ Q + +Q +Q + + K+++ N+ ++ +KL FS +G I + + +
Sbjct: 270 ERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR--VKVMQE 327
Query: 285 TGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
G+ KGF L + + + A KA+ E + G IL G KP
Sbjct: 328 EGQSKGFGLICFSSPEDATKAMTEMN----GRIL-------GSKP 361
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+++ L E L + F +G I K + ++ G+SKG+G I F + A KA+ E
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
Query: 192 PQKKI-GNRMTACQLA 206
+I G++ + LA
Sbjct: 352 MNGRILGSKPLSIALA 367
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 239 HHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMAD 61
Query: 299 VDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 62 RAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +GEIE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%)
Query: 238 QHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297
H Q + T KIFV + L +F +GEIEE + D+ TGK +G+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 298 TVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 31/203 (15%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK +F+ L + L D F +G I CK D+ +G SKGYGF+ ++T
Sbjct: 144 DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYET 202
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
A +A+K + N + + +G H + Q +
Sbjct: 203 DEAAAQAIKH----VNNMLLNEKKVYVG-----------------YHIPKKDRQSKFEEM 241
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
++ +T I+V N+ E ++ F+KYG++ L D + GK +GF + T +
Sbjct: 242 KANFT--NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTHEC 298
Query: 302 AKKALEEPH-KNFEGHILNCQRA 323
A KA+EE + K F G L RA
Sbjct: 299 AAKAVEELNGKEFRGQDLYVGRA 321
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
I+V + + E D F +YG++ D GKS+G+GF+ F T A KA++E
Sbjct: 247 NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKAVEE 305
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ + Q +G A +H+ + + + ++ + + ++Y ++
Sbjct: 306 ----LNGKEFRGQDLYVG---------RAQKKHEREEELRKSYEAARLEKANKYQGVNLY 352
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285
+ N+ +++ KL FS+YG I + D T
Sbjct: 353 IKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVT 386
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 34/194 (17%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
++V L L + F Q G + + D ++ +S GY ++ + + S KAL+E
Sbjct: 67 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEEL 126
Query: 193 QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252
+ + C++ + PA+ T Q +F+
Sbjct: 127 NYTL-IKGRPCRI--MWSQRDPALRKTG--------------------------QGNVFI 157
Query: 253 SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKN 312
N+ ++ + L F+ +G I + D+ G KG+ Y+T +AA +A+ K+
Sbjct: 158 KNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAI----KH 212
Query: 313 FEGHILNCQRAIDG 326
+LN ++ G
Sbjct: 213 VNNMLLNEKKVYVG 226
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 238 QHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 298 TVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 239 HHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 2 HTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMAD 61
Query: 299 VDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 62 RAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 238 QHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 298 TVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 31/203 (15%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK IF+ L + L D F +G I CK D+ G SKGYGF+ ++T
Sbjct: 139 DPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-HGNSKGYGFVHYET 197
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
A +A+K + N + H + Q +
Sbjct: 198 DEAASQAIKHVNGMLLNEKKV---------------------YVGHHIPKKDRQSKFEEM 236
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
++ +T ++V N+ +E+ ++ F+K+GE+ L D+ GK +GF + T +A
Sbjct: 237 KANFT--NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEA 293
Query: 302 AKKALEEPH-KNFEGHILNCQRA 323
A +A++E + K+F G L RA
Sbjct: 294 AAQAVDELNGKDFRGQDLYVGRA 316
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
++V + + E + F ++GE+ D+ GKS+G+GF+ F T A +A+ E
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAQAVDE 300
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ + Q +G A +H+ + + + ++ + + ++Y ++
Sbjct: 301 ----LNGKDFRGQDLYVG---------RAQKKHEREEELRKSYEAARLEKANKYQGVNLY 347
Query: 252 VSNVGSELEPQKLLAFFSKYGEI 274
+ N+G +++ KL A FS+YG I
Sbjct: 348 IKNLGDDVDDDKLRAMFSEYGPI 370
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 34/194 (17%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
++V L L + F Q G + + D V+ +S GY ++ + T + KAL+E
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 193 QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252
+ + C++ + PA+ T IF+
Sbjct: 122 NYTL-IKGRPCRI--MWSQRDPALRKTGAG--------------------------NIFI 152
Query: 253 SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKN 312
N+ + ++ + L F+ +G I + D+ G KG+ Y+T +AA +A+ K+
Sbjct: 153 KNLDAAIDNKALHDTFAAFGNILSCKVAQDE-HGNSKGYGFVHYETDEAASQAI----KH 207
Query: 313 FEGHILNCQRAIDG 326
G +LN ++ G
Sbjct: 208 VNGMLLNEKKVYVG 221
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 30/203 (14%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK +F+ L + L D F +G I CK D+ G SKGYGF+ ++T
Sbjct: 134 DPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYET 192
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
A+ A+K + + + +G H + Q +
Sbjct: 193 AEAAQNAIKH----VNGMLLNDKKVFVG-----------------HHIAKKDRQSKFEEM 231
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
++ +T ++V N+ + ++ F K+GEI L D +GK +GF + + D
Sbjct: 232 KANFT--NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDN 289
Query: 302 AKKALEEPH-KNFEGHILNCQRA 323
A A+E + K+F+G L RA
Sbjct: 290 AAAAVEALNDKDFKGQKLYVGRA 312
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
++V + DT E D F+++GEI D SGKS+G+GF+ F + A A+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV-- 294
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ + ++ Q +G A +H+ + + + Q++ + + S+Y ++
Sbjct: 295 --EALNDKDFKGQKLYVG---------RAQKKHEREEELRKQYEAARIEKASKYQGVNLY 343
Query: 252 VSNVGSELEPQKLLAFFSKYGEI 274
+ N+ +++ +KL FS YG I
Sbjct: 344 IKNLSDDIDDEKLRELFSSYGTI 366
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 34/199 (17%)
Query: 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
P ++V L L + F G++ + D V+ +S GY ++ + + +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 188 ALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQ 247
AL++ + + C++ + PA+ T Q
Sbjct: 112 ALEDLNYTL-IKGRPCRI--MWSQRDPALRKTG--------------------------Q 142
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+F+ N+ + ++ + L F+ +G I + D+ G KG+ Y+T +AA+ A+
Sbjct: 143 GNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAAQNAI- 200
Query: 308 EPHKNFEGHILNCQRAIDG 326
K+ G +LN ++ G
Sbjct: 201 ---KHVNGMLLNDKKVFVG 216
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 38/205 (18%)
Query: 127 DPVHRK-----IFVHGL--GWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
DP RK +F+ L G D KA L D F +G I CK V D SKG+GF+ +
Sbjct: 89 DPSLRKSGVGNVFIKNLDKGIDHKA--LYDTFSAFGNILSCKVVTDD-GNSSKGFGFVHY 145
Query: 180 KTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQH 239
+T+ A KA+ K+ M Q +GP + ++
Sbjct: 146 ETQESADKAI----AKVNGMMINGQKVFVGPFKS----------------------SKER 179
Query: 240 HQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV 299
Q +E +F N+ ++ P +L +YGEI + D GK KGF +++
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESA 238
Query: 300 DAAKKALE-EPHKNFEGHILNCQRA 323
+AAK +E E K F G + RA
Sbjct: 239 EAAKNVVENENGKIFHGKPIYAGRA 263
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
+F L D + L + +QYGEI + + D GKSKG+GF F++ A+ ++
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVEN 247
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
KI + P A A + + + + +H + ++Y ++
Sbjct: 248 ENGKIFH-------------GKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLY 287
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311
+ N+ ++ KL FS++G I + D KGF Y D A +A+ E +
Sbjct: 288 IKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNG 347
Query: 312 NFEG 315
G
Sbjct: 348 RMIG 351
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 238 QHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 298 TVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 239 HHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 2 HTVQKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMAD 61
Query: 299 VDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 62 RAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 14/192 (7%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ R +I P T + + + + Q+ + KIF
Sbjct: 71 RPHTLDGR-------NIDP-------KPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIF 116
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311
V + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 117 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFH 176
Query: 312 NFEGHILNCQRA 323
+ G + +RA
Sbjct: 177 DIMGKKVEVKRA 188
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 29 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 88
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 89 ERACKDPNPIIDGRKANVNLAYLG 112
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 238 QHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 24 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 83
Query: 298 TVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 84 DRAAAERACKDPNPIIDGRKANVNLAYLGAKP 115
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 14/192 (7%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
+ R +I P T + + + + Q+ + KIF
Sbjct: 71 RPHTLDGR-------NIDP-------KPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIF 116
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311
V + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 117 VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFH 176
Query: 312 NFEGHILNCQRA 323
+ G + +RA
Sbjct: 177 DIMGKKVEVKRA 188
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D KIFV GL + T +L F+ +G+I++ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 239 HHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298
H Q + T KIFV + L +F +G+I+E + D+ TGK +G+
Sbjct: 2 HTVQKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSD 61
Query: 299 VDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA++A ++P+ +G N A G KP
Sbjct: 62 RAAAERACKDPNPIIDGRKANVNLAYLGAKP 92
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 103 VNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKA 162
VN + +D +S H +FV L + E + AF +G I D +
Sbjct: 78 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 137
Query: 163 VCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGPATTPAVASTAT 221
V D +GKSKGYGF+ F + A A+++ + +G R A+ P PA ST
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP---PAPKSTY- 193
Query: 222 HQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281
+ Q + + QS + ++ V S L Q + FS +G+I E +
Sbjct: 194 ------ESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320
D KG+ + + ++A A+ + EGH++ C
Sbjct: 248 D------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 28/188 (14%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
ED + + ++V L D ++ F Q G ++CK + D + + Y F+ F
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFH----E 55
Query: 186 RKALKEPQKKIGNRMTACQLASIGPATTPA-----VASTATHQHQHQHQHQHQHQHQQHH 240
+ + R + + ATTP+ +S+ Q H H
Sbjct: 56 HRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFH-------- 107
Query: 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVD 300
+FV ++ E+ + + A F+ +G I + + D ATGK KG+ +
Sbjct: 108 ---------VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 301 AAKKALEE 308
A+ A+++
Sbjct: 159 DAENAIQQ 166
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 18/220 (8%)
Query: 103 VNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKA 162
VN + +D +S H +FV L + E + AF +G I D +
Sbjct: 78 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 137
Query: 163 VCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGPATTPAVASTAT 221
V D +GKSKGYGF+ F + A A+++ + +G R A+ P PA ST
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP---PAPKST-- 192
Query: 222 HQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281
+ Q + + QS ++ V S L Q + FS +G+I E +
Sbjct: 193 -----YESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320
D KG+ + + ++A A+ + EGH++ C
Sbjct: 248 D------KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKC 281
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 28/188 (14%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
ED + + ++V L D ++ F Q G ++CK + D + + Y F+ F
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFH----E 55
Query: 186 RKALKEPQKKIGNRMTACQLASIGPATTPA-----VASTATHQHQHQHQHQHQHQHQQHH 240
+ + R + + ATTP+ +S+ Q H H
Sbjct: 56 HRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFH-------- 107
Query: 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVD 300
+FV ++ E+ + + A F+ +G I + + D ATGK KG+ +
Sbjct: 108 ---------VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 301 AAKKALEE 308
A+ A+++
Sbjct: 159 DAENAIQQ 166
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK +F+ L + L D F +G I CK VCD+ SKGY F+ F+T
Sbjct: 90 DPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFET 147
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
+ A KA+ +K+ + + +G + + + + + + +
Sbjct: 148 QEAADKAI----EKMNGMLLNDRKVFVG-----------------RFKSRKEREAELGAK 186
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
E+T +++ N G E++ + L FS++G+ + D GK KGF Y+ +
Sbjct: 187 AKEFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHED 243
Query: 302 AKKALEEPH-KNFEGHILNCQRA 323
A KA+EE + K G I+ RA
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRA 266
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 89/185 (48%), Gaps = 20/185 (10%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E+L + F Q+G+ K + D +GKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE- 250
Query: 193 QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQ--SEYTQRKI 250
+ + + ++ +G A Q + + Q + + + +Q Q+ S Y +
Sbjct: 251 ---MNGKEISGKIIFVGRA-----------QKKVERQAELKRKFEQLKQERISRYQGVNL 296
Query: 251 FVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310
++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A KA+ E +
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 311 KNFEG 315
G
Sbjct: 355 GRIVG 359
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 107 REAAE--NHRDVASRVRQV--ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEI 157
R+A E N+ + R+ ++ + DP RK IF+ L D + L D F +G+I
Sbjct: 93 RKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDI 152
Query: 158 EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVA 217
K D+ +GKSKG+GF+ F+ A++A+ + + Q + P
Sbjct: 153 LSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI----DALNGMLLNGQEIYVAP------- 200
Query: 218 STATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG 277
H + + Q ++ YT ++V N+ SE ++ F+K+G I
Sbjct: 201 ----------HLSRKERDSQLEETKAHYT--NLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 278 PLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
L D A GK KGF Y+ + A KA+E
Sbjct: 249 SLEKD-ADGKLKGFGFVNYEKHEDAVKAVE 277
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
+ ++V + +T E + F ++G I D GK KG+GF+ ++ A KA+
Sbjct: 218 YTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAV 276
Query: 190 KEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRK 249
+ + + + +G A +++ H + Q++ + + ++Y
Sbjct: 277 E----ALNDSELNGEKLYVG---------RAQKKNERMHVLKKQYEAYRLEKMAKYQGVN 323
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
+FV N+ ++ +KL F+ YG I + + GK KGF + T + A KA+ E
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAITE 381
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 117 ASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGF 176
A R+ ++A V+ +FV L E L + F YG I K V +GKSKG+GF
Sbjct: 310 AYRLEKMAKYQGVN--LFVKNLDDSVDDEKLEEEFAPYGTITSAK-VMRTENGKSKGFGF 366
Query: 177 ILFKTRSGARKALKEPQKKI 196
+ F T A KA+ E ++I
Sbjct: 367 VCFSTPEEATKAITEKNQQI 386
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK IF+ L + L D F +G I CK VCD+ SKGYGF+ F+T
Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFET 147
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
+ A +A+ +K+ + + +G + + + + + + +
Sbjct: 148 QEAAERAI----EKMNGMLLNDRKVFVG-----------------RFKSRKEREAELGAR 186
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
E+T +++ N G +++ ++L F K+G + D+ +GK KGF ++ +
Sbjct: 187 AKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 302 AKKALEEPH-KNFEGHILNCQRA 323
A+KA++E + K G + RA
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRA 266
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L D F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 193 QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252
G + Q+ A + + Q + + + + + + + Y ++V
Sbjct: 252 N---GKELNGKQI----------YVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 298
Query: 253 SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
N+ ++ ++L FS +G I + ++ G+ KGF + + + A KA+ E
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
++V L E L F +G I K + + G+SKG+GF+ F + A KA+ E
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 193 QKKI 196
+I
Sbjct: 354 NGRI 357
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 18/214 (8%)
Query: 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
H +FV L + E + AF +G+I D + V D +GKSKGYGF+ F + A A+
Sbjct: 96 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155
Query: 190 KEPQKK-IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQR 248
+ +G R A+ P PA ST Q + Q + + QS
Sbjct: 156 VHMGGQWLGGRQIRTNWATRKP---PAPKST-------QENNTKQLRFEDVVNQSSPKNC 205
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
++ + S L Q + FS +G+I E KG+ + T ++A A+
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIME------IRVFPEKGYSFVRFSTHESAAHAIVS 259
Query: 309 PH-KNFEGHILNCQRAIDGPKPGKSHKCKPQCDW 341
+ EGH++ C + P K+ + W
Sbjct: 260 VNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 293
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 30/180 (16%)
Query: 123 VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR 182
+ ++D R ++V L D ++ F Q G + CK + + S Y F+ F
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFY-- 56
Query: 183 SGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQ 242
+ + R + + ATTP+ T H H
Sbjct: 57 --EHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH---------------- 98
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLF-VYKTVDA 301
+FV ++ E+ + + + F+ +G+I + + D ATGK KG+ Y +DA
Sbjct: 99 -------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 18/214 (8%)
Query: 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
H +FV L + E + AF +G+I D + V D +GKSKGYGF+ F + A A+
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172
Query: 190 KEPQKK-IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQR 248
+ +G R A+ P PA ST Q + Q + + QS
Sbjct: 173 VHMGGQWLGGRQIRTNWATRKP---PAPKST-------QETNTKQLRFEDVVNQSSPKNC 222
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
++ + S L Q + FS +G+I E KG+ + T ++A A+
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME------IRVFPEKGYSFVRFSTHESAAHAIVS 276
Query: 309 PH-KNFEGHILNCQRAIDGPKPGKSHKCKPQCDW 341
+ EGH++ C + P K+ + W
Sbjct: 277 VNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 310
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 35/191 (18%)
Query: 123 VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK--SKGYGFILFK 180
+ ++D R ++V L D ++ F Q G + CK + ++ + + GF + +
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ 60
Query: 181 TRSGARKALKE---------PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQ 231
S E + R + + ATTP+ T H H
Sbjct: 61 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH----- 115
Query: 232 HQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGF 291
+FV ++ E+ + + + F+ +G+I + + D ATGK KG+
Sbjct: 116 ------------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 292 CLF-VYKTVDA 301
Y +DA
Sbjct: 158 GFVSFYNKLDA 168
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
IFV L W E L F+ G + + + ++ + +S+GYG++ F+ +S A KA++E
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 193 Q-KKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF 251
Q K+I R C +++ PA + + ++ +F
Sbjct: 230 QGKEIDGRPINCDMSTSKPAG-------------------NNDRAKKFGDTPSEPSDTLF 270
Query: 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+ N+ + + F+K+GE+ + T +PKGF + ++ AKKAL+
Sbjct: 271 LGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+F+ L ++ + + + F ++GE+ + + + KG+G++ F A+KAL
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 193 QKK-IGNRMTACQLASIGP 210
Q + I NR +S P
Sbjct: 329 QGEYIDNRPVRLDFSSPRP 347
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK +F+ L + L D F +G+I CK D++ G +KGYGF+ F +
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDS 217
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
A A++ + N + H + + Q +
Sbjct: 218 VESANAAIEHVNGMLLNDKKV---------------------YVGHHVSRRERQSKVEAL 256
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
++ +T +++ N+ +E+ Q+ F ++GEI L D+ KP+GF Y +
Sbjct: 257 KANFTN--VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHEC 313
Query: 302 AKKALEEPH-KNFEGHILNCQRA 323
A+KA++E + K ++G L RA
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRA 336
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
+++ L + + D F Q+GEI V D+ + K +G+GF+ + A+KA+ E
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320
Query: 192 PQKK--IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRK 249
K G ++ + A +H+ + + + +++ + + ++Y
Sbjct: 321 LNDKEYKGKKLYVGR---------------AQKKHEREEELRKRYEQMKLEKMNKYQGVN 365
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
+F+ N+ E++ ++L A FS +G I + D+ GK KGF Y T + A KA+ E
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTE 423
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 34/210 (16%)
Query: 117 ASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGF 176
AS V + P ++V L L + F G + + D V+ +S GY +
Sbjct: 66 ASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 177 ILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQH 236
+ F KAL E + + C++
Sbjct: 126 VNFHNMEDGEKALDELNYTL-IKGRPCRI----------------------------MWS 156
Query: 237 QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVY 296
Q+ + +F+ N+ ++ + L FS +G+I + +D+ G KG+ +
Sbjct: 157 QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215
Query: 297 KTVDAAKKALEEPHKNFEGHILNCQRAIDG 326
+V++A A+E H N G +LN ++ G
Sbjct: 216 DSVESANAAIE--HVN--GMLLNDKKVYVG 241
Score = 39.3 bits (90), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
+F+ L + E L F +G I K + D+ GKSKG+GF+ + T A KA+ E
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTE 423
Query: 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQH 239
+ RM A + + A V + Q + Q Q ++Q + QQ
Sbjct: 424 ----MNQRMLAGKPLYVALAQRKEVRRS---QLEAQIQARNQFRLQQQ 464
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 127 DPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
DP RK I++ L + L D F +G+I CK D+ G S+G+GF+ +++
Sbjct: 125 DPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEF-GNSRGFGFVHYES 183
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQ 241
A A++ + + + +GP H + Q +
Sbjct: 184 AESAESAIQH----VNGMLLNDKKVFVGP-------------------HVPKSDRMQSFE 220
Query: 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA 301
+ + + +F+ N+G+E+ + +K+GE L + GKP GF YK D
Sbjct: 221 EQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTND-EGKPTGFGFVDYKEHDV 279
Query: 302 AKKALEEPHKN-FEGHILNCQRA 323
A KA++ + F+G+ L RA
Sbjct: 280 AVKAIDGLSETEFKGNKLFAGRA 302
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 21/199 (10%)
Query: 113 HRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSK 172
H + R++ ++ +F+ LG + + ++GE + GK
Sbjct: 209 HVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTND-EGKPT 267
Query: 173 GYGFILFKTRSGARKA---LKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQ 229
G+GF+ +K A KA L E + K GN++ A A +++ +
Sbjct: 268 GFGFVDYKEHDVAVKAIDGLSETEFK-GNKL---------------FAGRAKKKYERADE 311
Query: 230 HQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289
+ Q++ + + ++Y +++ N+ ++ KL A F+ +G I + +D+A GK K
Sbjct: 312 LRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEA-GKSK 370
Query: 290 GFCLFVYKTVDAAKKALEE 308
GF Y + + A KA+ E
Sbjct: 371 GFGFVCYSSPEEATKAVTE 389
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 117 ASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGF 176
ASR+ ++ V+ +++ L + L F +G I K + D+ +GKSKG+GF
Sbjct: 318 ASRLEKLNKYQGVN--LYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDE-AGKSKGFGF 374
Query: 177 ILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQH 236
+ + + A KA+ E + +R+ A + + V + + Q Q Q Q ++
Sbjct: 375 VCYSSPEEATKAVTE----MNHRLVAGKPLYV-------VLAQRKDVRRSQLQQQIQAKN 423
Query: 237 QQHHQQ 242
Q QQ
Sbjct: 424 QMRLQQ 429
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 27 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 86
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 87 DRACKDPNPIIDGRKANVNLAYLG 110
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 238 QHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297
H Q + T KIFV + L +F +G+IEE + D+ TGK +G+
Sbjct: 22 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 81
Query: 298 TVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329
AA +A ++P+ +G N A G KP
Sbjct: 82 DRAAADRACKDPNPIIDGRKANVNLAYLGAKP 113
>sp|Q9Y7Y3|YGR4_SCHPO Uncharacterized RNA-binding protein C365.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC365.04c PE=4 SV=1
Length = 233
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 62 EEEEKADQKEDEEEEEKADQNDEEDDEPILSLLEPFSKDQLVNLLREAAEN--HRDVASR 119
EE EK Q+++EE E+KA D+ P L + KD + + N H+ + S+
Sbjct: 28 EEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKD------KHSVSNPPHKTLKSK 81
Query: 120 VRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
RQ + +FV L D+ ETL FK+ G++ + DK SG+ KGY F+ F
Sbjct: 82 -RQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 241 QQSEYTQRKI--FVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCL--FVY 296
Q+ + RK+ FV N+ + + L F + G++ + DK +G+ KG+ F+
Sbjct: 83 QKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFIN 142
Query: 297 KTVDAAKKALEEPHKNFEGHILNCQRAIDG 326
D KAL+ H ++ +N + G
Sbjct: 143 PKTDVISKALKFHHTIYKERKINIELTAGG 172
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK---SKGYGFILFKTRSGARKAL 189
+F+ L + T ETL F + G I+ C K S G+GF+ +K A+KAL
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783
Query: 190 KEPQKKIGNRMTACQL-ASIG-PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQ 247
K+ Q G+ + +L I AT PA+ ST Q + T
Sbjct: 784 KQLQ---GHTVDGHKLEVRISERATKPALTSTRKKQVPKKQ-----------------TT 823
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID-KATGKPKGFCLFVYKTVDAAKKAL 306
KI V N+ + +++ FS +GE++ L TG +GF + T AKKA
Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 16/182 (8%)
Query: 163 VCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATH 222
+ G GY F+ + +KALK + +G R P ST
Sbjct: 323 IVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPW 382
Query: 223 QHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282
Q + +++ + ++FV N+ + L FS YG + E ID
Sbjct: 383 QGRTLGENEEEEDLADSG--------RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID 434
Query: 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC-------QRAIDGPKPGKSHK 334
T KPKGF + + A KA E + F+G +L+ + + + PG S+K
Sbjct: 435 SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYK 494
Query: 335 CK 336
K
Sbjct: 495 KK 496
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
+IFV L + TK E L F ++G+I + D S KSKG FIL+ A +AL +
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 192 PQKKI 196
K+
Sbjct: 422 MDGKV 426
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 16/199 (8%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSK------GYGFILFKTRSGAR 186
+++ L W T ETL+ FK + + + K + K+ G+GFI F ++ GA
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVN-IATKANPKNPSERLPCGFGFIEFSSKQGAY 738
Query: 187 KALKEPQ-KKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEY 245
+ +K+ I + +L+ + + + + + + Q
Sbjct: 739 ECIKKLNGSSIDGYEISLKLSDKNETNVQEI------NKRRELPENSKQSIKSNGGQPNK 792
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
KI + N+ E +++ F+ YGEI+ + K G +GF + T + AK A
Sbjct: 793 PSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIP-KKPNGGHRGFGFVEFLTEEEAKNA 851
Query: 306 LEE-PHKNFEGHILNCQRA 323
+E + +F G L Q A
Sbjct: 852 MEALGNSHFYGRHLVLQYA 870
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
+IFV N+ + + L FSK+G+I E + ID + K KG +Y + A +AL +
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 309 PH-KNFEGHILNCQRAIDGPKPGKSHKCK 336
K F+G +++ PGK+ K
Sbjct: 422 MDGKVFQGRLIHVL-------PGKAAPAK 443
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 151 FKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGP 210
F+++G + D K + K GKS+ +GFI F T A+ AL I + A++
Sbjct: 24 FEKFGTVTDAKII--KKDGKSRLFGFIGFSTEQSAKNALSLNGTFIDTSKIVVETATVAS 81
Query: 211 ATT 213
TT
Sbjct: 82 ETT 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,154,635
Number of Sequences: 539616
Number of extensions: 8026011
Number of successful extensions: 447561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6009
Number of HSP's successfully gapped in prelim test: 2207
Number of HSP's that attempted gapping in prelim test: 142078
Number of HSP's gapped (non-prelim): 122629
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)