Query 016219
Match_columns 393
No_of_seqs 379 out of 3423
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3E-34 6.5E-39 265.8 25.9 173 125-329 102-278 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 3.9E-34 8.5E-39 241.8 18.3 182 128-331 60-243 (321)
3 TIGR01645 half-pint poly-U bin 100.0 5E-33 1.1E-37 270.3 24.4 182 128-330 105-288 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.2E-31 1.3E-35 249.4 23.9 201 128-328 87-351 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 1.1E-30 2.3E-35 256.2 24.2 181 125-325 84-265 (457)
6 KOG0144 RNA-binding protein CU 100.0 7.1E-32 1.5E-36 241.8 14.3 173 125-329 29-209 (510)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.4E-30 5.3E-35 245.3 24.9 166 130-327 3-172 (352)
8 KOG0117 Heterogeneous nuclear 100.0 2.7E-30 5.8E-35 232.8 18.3 199 126-332 79-337 (506)
9 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-28 2.5E-33 247.3 20.0 164 132-326 2-167 (562)
10 KOG0145 RNA-binding protein EL 100.0 3.5E-29 7.6E-34 210.6 12.9 241 86-326 54-358 (360)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.4E-28 7.4E-33 243.9 21.8 184 127-326 175-364 (562)
12 KOG0131 Splicing factor 3b, su 100.0 9.4E-29 2E-33 197.7 12.5 170 130-330 9-181 (203)
13 TIGR01648 hnRNP-R-Q heterogene 100.0 2.2E-27 4.7E-32 230.9 23.1 193 128-329 56-310 (578)
14 KOG0127 Nucleolar protein fibr 100.0 3.1E-28 6.7E-33 224.3 16.1 192 130-330 5-200 (678)
15 KOG0145 RNA-binding protein EL 100.0 4.3E-28 9.4E-33 204.0 15.4 168 129-328 40-211 (360)
16 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-27 5.2E-32 235.7 18.7 194 125-328 170-377 (509)
17 KOG0127 Nucleolar protein fibr 100.0 4.3E-27 9.2E-32 216.8 17.8 198 130-328 117-380 (678)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-25 3.7E-30 222.4 22.5 191 130-324 295-500 (509)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.2E-25 9.1E-30 216.4 21.8 191 128-325 273-479 (481)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.6E-25 2.1E-29 213.8 21.3 167 130-326 2-174 (481)
21 KOG4205 RNA-binding protein mu 99.9 2.2E-25 4.7E-30 200.4 14.6 177 129-331 5-181 (311)
22 KOG0124 Polypyrimidine tract-b 99.9 7.4E-26 1.6E-30 199.1 9.4 180 130-330 113-294 (544)
23 TIGR01622 SF-CC1 splicing fact 99.9 3.3E-23 7.3E-28 203.2 22.5 192 129-324 185-446 (457)
24 KOG0147 Transcriptional coacti 99.9 2.5E-25 5.4E-30 206.3 6.0 193 119-329 168-361 (549)
25 KOG0109 RNA-binding protein LA 99.9 4.5E-24 9.7E-29 182.8 11.9 149 132-330 4-154 (346)
26 KOG0144 RNA-binding protein CU 99.9 1.9E-24 4.1E-29 194.3 9.8 244 83-327 44-505 (510)
27 KOG0110 RNA-binding protein (R 99.9 4.7E-24 1E-28 203.1 12.8 173 132-327 517-694 (725)
28 KOG0146 RNA-binding protein ET 99.9 3.6E-24 7.7E-29 181.1 8.2 198 129-327 18-366 (371)
29 KOG0123 Polyadenylate-binding 99.9 4.8E-23 1E-27 192.1 15.5 151 132-328 3-155 (369)
30 KOG0148 Apoptosis-promoting RN 99.9 1.7E-22 3.7E-27 171.5 11.2 140 128-328 4-144 (321)
31 KOG0123 Polyadenylate-binding 99.8 2.8E-20 6E-25 173.7 14.7 167 132-326 78-246 (369)
32 PLN03134 glycine-rich RNA-bind 99.8 1.7E-19 3.7E-24 146.8 15.3 85 244-328 31-116 (144)
33 TIGR01645 half-pint poly-U bin 99.8 2.2E-18 4.8E-23 168.4 22.1 79 129-207 203-282 (612)
34 KOG0105 Alternative splicing f 99.8 1.3E-17 2.8E-22 134.1 19.2 181 128-324 4-188 (241)
35 KOG4206 Spliceosomal protein s 99.8 1.7E-17 3.6E-22 138.8 16.4 185 131-324 10-220 (221)
36 KOG4211 Splicing factor hnRNP- 99.7 4.2E-17 9.1E-22 150.0 16.4 171 128-323 8-179 (510)
37 KOG0149 Predicted RNA-binding 99.7 1.8E-17 3.9E-22 138.9 11.5 82 247-328 12-93 (247)
38 KOG0147 Transcriptional coacti 99.7 1.6E-17 3.4E-22 154.9 12.1 188 131-323 279-525 (549)
39 PLN03134 glycine-rich RNA-bind 99.7 1.9E-16 4.1E-21 128.9 11.8 84 128-211 32-116 (144)
40 KOG4212 RNA-binding protein hn 99.7 1.5E-15 3.2E-20 137.5 16.8 197 124-322 38-290 (608)
41 KOG1548 Transcription elongati 99.7 2.2E-15 4.7E-20 132.8 16.7 196 128-328 132-354 (382)
42 KOG0110 RNA-binding protein (R 99.7 6.6E-16 1.4E-20 147.9 14.4 192 127-324 382-596 (725)
43 KOG0149 Predicted RNA-binding 99.6 3.9E-16 8.5E-21 130.9 8.5 85 127-211 9-93 (247)
44 TIGR01659 sex-lethal sex-letha 99.6 8.2E-16 1.8E-20 143.0 10.4 84 243-326 103-187 (346)
45 PF00076 RRM_1: RNA recognitio 99.6 1E-15 2.2E-20 109.3 8.0 69 250-319 1-70 (70)
46 KOG0121 Nuclear cap-binding pr 99.6 9.7E-16 2.1E-20 115.9 7.7 80 245-324 34-114 (153)
47 KOG1457 RNA binding protein (c 99.6 1E-14 2.2E-19 121.0 13.3 181 126-310 30-269 (284)
48 KOG0122 Translation initiation 99.6 2.4E-15 5.3E-20 126.6 9.2 81 246-326 188-269 (270)
49 COG0724 RNA-binding proteins ( 99.6 1.7E-14 3.7E-19 132.0 14.3 169 130-308 115-286 (306)
50 PF14259 RRM_6: RNA recognitio 99.6 6E-15 1.3E-19 105.4 7.6 69 250-319 1-70 (70)
51 PF00076 RRM_1: RNA recognitio 99.6 1.4E-14 3E-19 103.4 8.5 69 133-202 1-70 (70)
52 KOG0106 Alternative splicing f 99.6 8.9E-15 1.9E-19 123.9 8.4 165 131-324 2-169 (216)
53 PLN03120 nucleic acid binding 99.6 1.9E-14 4.1E-19 125.2 10.6 76 247-326 4-80 (260)
54 KOG0126 Predicted RNA-binding 99.6 4.3E-16 9.3E-21 125.1 0.4 84 246-329 34-118 (219)
55 KOG0120 Splicing factor U2AF, 99.6 4.1E-14 8.9E-19 133.9 13.6 188 129-324 288-490 (500)
56 KOG0121 Nuclear cap-binding pr 99.6 7.5E-15 1.6E-19 111.1 6.9 79 129-207 35-114 (153)
57 KOG0125 Ataxin 2-binding prote 99.6 1.3E-14 2.8E-19 127.1 9.1 85 242-328 91-176 (376)
58 KOG4207 Predicted splicing fac 99.6 1.3E-14 2.7E-19 119.1 8.5 86 243-328 9-95 (256)
59 KOG0113 U1 small nuclear ribon 99.6 4.2E-14 9.1E-19 122.4 11.9 84 245-328 99-183 (335)
60 KOG0124 Polypyrimidine tract-b 99.5 1.6E-13 3.4E-18 121.8 15.3 79 129-207 209-288 (544)
61 KOG0111 Cyclophilin-type pepti 99.5 8.1E-15 1.8E-19 121.2 5.8 85 245-329 8-93 (298)
62 KOG1190 Polypyrimidine tract-b 99.5 8.5E-13 1.9E-17 118.9 17.1 187 130-325 297-490 (492)
63 KOG1365 RNA-binding protein Fu 99.5 1.1E-14 2.4E-19 129.7 4.8 192 131-325 162-361 (508)
64 PLN03213 repressor of silencin 99.5 4.6E-14 1E-18 129.7 8.8 78 245-326 8-88 (759)
65 KOG0122 Translation initiation 99.5 8.1E-14 1.8E-18 117.5 9.4 80 129-208 188-268 (270)
66 KOG0114 Predicted RNA-binding 99.5 1.2E-13 2.7E-18 100.6 9.0 80 244-326 15-95 (124)
67 KOG4211 Splicing factor hnRNP- 99.5 1.9E-12 4E-17 119.8 18.9 191 129-322 102-354 (510)
68 KOG0130 RNA-binding protein RB 99.5 7.9E-14 1.7E-18 106.6 7.9 88 242-329 67-155 (170)
69 KOG0126 Predicted RNA-binding 99.5 4.8E-15 1E-19 119.1 1.3 84 128-211 33-117 (219)
70 PF14259 RRM_6: RNA recognitio 99.5 8.1E-14 1.8E-18 99.5 7.6 69 133-202 1-70 (70)
71 PLN03120 nucleic acid binding 99.5 1.3E-13 2.8E-18 120.1 10.1 76 130-208 4-79 (260)
72 KOG0107 Alternative splicing f 99.5 2E-13 4.4E-18 109.3 10.0 78 247-329 10-88 (195)
73 KOG4212 RNA-binding protein hn 99.5 1.4E-12 3E-17 118.5 16.4 73 246-323 535-608 (608)
74 TIGR01648 hnRNP-R-Q heterogene 99.5 2.1E-13 4.6E-18 133.5 12.2 136 129-276 232-370 (578)
75 KOG0129 Predicted RNA-binding 99.5 6.7E-13 1.4E-17 123.5 14.1 172 125-310 254-434 (520)
76 KOG0113 U1 small nuclear ribon 99.5 1.3E-13 2.9E-18 119.4 8.8 82 128-209 99-181 (335)
77 smart00362 RRM_2 RNA recogniti 99.5 3.3E-13 7.2E-18 96.2 8.7 71 249-321 1-72 (72)
78 KOG0117 Heterogeneous nuclear 99.5 3.5E-13 7.7E-18 122.8 10.0 83 245-327 81-165 (506)
79 PLN03121 nucleic acid binding 99.4 4.7E-13 1E-17 114.6 10.0 77 246-325 4-80 (243)
80 smart00360 RRM RNA recognition 99.4 5.5E-13 1.2E-17 94.7 8.5 70 252-321 1-71 (71)
81 KOG0131 Splicing factor 3b, su 99.4 1.9E-13 4.1E-18 110.2 6.0 79 246-324 8-87 (203)
82 KOG0108 mRNA cleavage and poly 99.4 5.4E-13 1.2E-17 125.8 9.9 82 248-329 19-101 (435)
83 PLN03121 nucleic acid binding 99.4 1.1E-12 2.4E-17 112.3 10.3 77 128-207 3-79 (243)
84 KOG4210 Nuclear localization s 99.4 3.3E-13 7.1E-18 121.8 7.2 177 129-328 87-266 (285)
85 KOG4207 Predicted splicing fac 99.4 4.9E-13 1.1E-17 109.9 6.8 83 130-212 13-96 (256)
86 KOG0120 Splicing factor U2AF, 99.4 1.6E-12 3.4E-17 123.3 10.3 188 126-328 171-371 (500)
87 KOG0107 Alternative splicing f 99.4 1.3E-12 2.8E-17 104.8 8.1 77 130-211 10-87 (195)
88 KOG0105 Alternative splicing f 99.4 3.2E-12 6.8E-17 103.3 9.7 79 246-327 5-84 (241)
89 cd00590 RRM RRM (RNA recogniti 99.4 3.9E-12 8.4E-17 91.2 9.2 73 249-322 1-74 (74)
90 KOG0114 Predicted RNA-binding 99.4 2.8E-12 6.2E-17 93.6 8.2 76 129-207 17-93 (124)
91 COG0724 RNA-binding proteins ( 99.4 2.2E-12 4.8E-17 118.0 9.6 79 247-325 115-194 (306)
92 KOG1190 Polypyrimidine tract-b 99.4 4.5E-11 9.8E-16 108.0 16.9 185 132-326 152-373 (492)
93 PLN03213 repressor of silencin 99.4 3E-12 6.4E-17 118.0 9.5 74 130-207 10-86 (759)
94 KOG0125 Ataxin 2-binding prote 99.4 2.3E-12 5E-17 113.1 8.3 81 127-209 93-174 (376)
95 smart00362 RRM_2 RNA recogniti 99.3 8.4E-12 1.8E-16 88.9 9.0 70 132-203 1-71 (72)
96 KOG0111 Cyclophilin-type pepti 99.3 1.8E-12 3.9E-17 107.4 5.4 83 129-211 9-92 (298)
97 smart00361 RRM_1 RNA recogniti 99.3 6.5E-12 1.4E-16 89.3 7.4 60 261-320 2-69 (70)
98 KOG0128 RNA-binding protein SA 99.3 3.1E-13 6.6E-18 132.3 0.3 151 129-328 666-817 (881)
99 KOG0130 RNA-binding protein RB 99.3 6.6E-12 1.4E-16 96.2 7.3 89 124-212 66-155 (170)
100 smart00360 RRM RNA recognition 99.3 1.8E-11 3.9E-16 86.8 8.4 69 135-203 1-70 (71)
101 KOG0108 mRNA cleavage and poly 99.3 9E-12 2E-16 117.6 8.4 80 131-210 19-99 (435)
102 PF13893 RRM_5: RNA recognitio 99.3 1.5E-11 3.3E-16 83.4 7.2 55 264-323 1-56 (56)
103 KOG1456 Heterogeneous nuclear 99.2 4.6E-10 9.9E-15 100.4 16.8 162 129-326 30-199 (494)
104 cd00590 RRM RRM (RNA recogniti 99.2 8.8E-11 1.9E-15 84.0 9.3 72 132-204 1-73 (74)
105 KOG0109 RNA-binding protein LA 99.2 2.2E-11 4.7E-16 105.4 6.1 74 248-329 3-77 (346)
106 KOG0415 Predicted peptidyl pro 99.2 2.3E-11 5E-16 107.8 6.0 86 244-329 236-322 (479)
107 KOG4454 RNA binding protein (R 99.2 4.8E-12 1E-16 105.0 1.5 135 128-310 7-146 (267)
108 KOG0146 RNA-binding protein ET 99.2 4.5E-11 9.8E-16 102.1 6.5 83 246-329 18-104 (371)
109 KOG0116 RasGAP SH3 binding pro 99.2 5E-10 1.1E-14 105.3 14.1 83 247-329 288-370 (419)
110 KOG4208 Nucleolar RNA-binding 99.1 1E-10 2.2E-15 96.7 7.1 81 246-326 48-130 (214)
111 KOG4205 RNA-binding protein mu 99.1 4.7E-11 1E-15 108.1 5.0 84 246-329 5-88 (311)
112 KOG4206 Spliceosomal protein s 99.1 7.2E-10 1.6E-14 93.3 11.4 82 248-332 10-96 (221)
113 smart00361 RRM_1 RNA recogniti 99.1 3.3E-10 7.1E-15 80.5 7.6 60 144-203 2-69 (70)
114 KOG4208 Nucleolar RNA-binding 99.1 2.8E-10 6.1E-15 94.1 7.0 79 129-207 48-128 (214)
115 KOG0132 RNA polymerase II C-te 99.1 3.3E-10 7.2E-15 110.1 8.2 81 243-329 417-498 (894)
116 KOG0153 Predicted RNA-binding 99.1 5.3E-10 1.2E-14 99.3 8.6 80 240-325 221-302 (377)
117 KOG0226 RNA-binding proteins [ 99.1 2.4E-10 5.1E-15 97.3 5.9 172 126-324 92-268 (290)
118 KOG0112 Large RNA-binding prot 99.0 2E-10 4.2E-15 113.4 4.3 162 125-327 367-532 (975)
119 PF13893 RRM_5: RNA recognitio 99.0 1.1E-09 2.4E-14 74.1 6.5 55 147-206 1-56 (56)
120 KOG0415 Predicted peptidyl pro 99.0 2.9E-09 6.3E-14 94.7 9.3 82 126-207 235-317 (479)
121 KOG4661 Hsp27-ERE-TATA-binding 99.0 2E-09 4.3E-14 101.2 8.3 87 242-328 400-487 (940)
122 KOG1456 Heterogeneous nuclear 98.9 7.1E-08 1.5E-12 86.6 17.1 195 125-326 282-489 (494)
123 KOG1365 RNA-binding protein Fu 98.9 1.2E-08 2.5E-13 91.9 9.3 176 128-320 58-237 (508)
124 KOG4660 Protein Mei2, essentia 98.8 1.3E-08 2.8E-13 96.2 9.6 179 125-325 70-249 (549)
125 KOG4307 RNA binding protein RB 98.8 1.1E-08 2.5E-13 98.3 9.1 194 128-323 309-511 (944)
126 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.1E-08 2.4E-13 96.3 8.6 84 127-210 402-486 (940)
127 KOG0132 RNA polymerase II C-te 98.8 8E-09 1.7E-13 100.7 7.6 77 129-211 420-497 (894)
128 KOG4676 Splicing factor, argin 98.8 4E-09 8.6E-14 95.0 4.5 179 131-313 8-213 (479)
129 KOG4209 Splicing factor RNPS1, 98.8 2.5E-08 5.5E-13 87.2 7.9 83 243-326 97-180 (231)
130 KOG1457 RNA binding protein (c 98.7 1.5E-07 3.2E-12 78.9 11.5 88 246-333 33-125 (284)
131 KOG0533 RRM motif-containing p 98.7 1.4E-07 3.1E-12 82.2 10.6 83 246-329 82-165 (243)
132 KOG1548 Transcription elongati 98.7 5.4E-08 1.2E-12 86.7 7.6 78 247-325 134-220 (382)
133 KOG0153 Predicted RNA-binding 98.7 7.2E-08 1.6E-12 86.0 7.8 77 126-208 224-302 (377)
134 KOG0116 RasGAP SH3 binding pro 98.6 1.2E-07 2.6E-12 89.4 7.7 78 130-207 288-365 (419)
135 KOG0151 Predicted splicing reg 98.5 2.4E-07 5.1E-12 89.8 7.6 85 244-328 171-259 (877)
136 KOG0533 RRM motif-containing p 98.5 5.3E-07 1.2E-11 78.7 8.9 83 126-209 79-162 (243)
137 KOG4307 RNA binding protein RB 98.5 1.8E-06 4E-11 83.6 12.7 76 247-322 867-943 (944)
138 KOG4660 Protein Mei2, essentia 98.5 1.2E-07 2.6E-12 89.7 4.4 71 244-319 72-143 (549)
139 KOG0226 RNA-binding proteins [ 98.5 2E-07 4.3E-12 79.7 5.0 82 125-206 185-267 (290)
140 KOG4209 Splicing factor RNPS1, 98.4 3.3E-07 7.2E-12 80.2 5.9 86 124-209 95-180 (231)
141 KOG0151 Predicted splicing reg 98.4 5.7E-07 1.2E-11 87.2 6.9 82 126-207 170-255 (877)
142 KOG0106 Alternative splicing f 98.4 3.7E-07 8E-12 77.9 5.0 71 248-326 2-73 (216)
143 KOG2193 IGF-II mRNA-binding pr 98.4 8E-08 1.7E-12 87.6 1.0 149 132-324 3-155 (584)
144 PF04059 RRM_2: RNA recognitio 98.4 2.2E-06 4.8E-11 64.0 8.4 77 248-324 2-85 (97)
145 KOG0128 RNA-binding protein SA 98.4 4.4E-08 9.5E-13 96.8 -1.3 166 129-316 570-736 (881)
146 KOG4454 RNA binding protein (R 98.3 2.4E-07 5.2E-12 77.5 2.6 79 246-326 8-87 (267)
147 PF04059 RRM_2: RNA recognitio 98.3 6.2E-06 1.3E-10 61.6 8.9 65 131-195 2-68 (97)
148 PF11608 Limkain-b1: Limkain b 98.1 7.7E-06 1.7E-10 58.1 5.9 66 248-323 3-74 (90)
149 KOG1995 Conserved Zn-finger pr 98.1 2.5E-06 5.5E-11 76.9 4.0 84 245-328 64-156 (351)
150 KOG4849 mRNA cleavage factor I 98.1 4E-06 8.7E-11 74.9 4.5 73 248-320 81-156 (498)
151 KOG3152 TBP-binding protein, a 98.0 3.6E-06 7.7E-11 72.3 3.6 71 130-200 74-157 (278)
152 PF08777 RRM_3: RNA binding mo 98.0 8.9E-06 1.9E-10 62.2 5.2 69 248-322 2-76 (105)
153 PF11608 Limkain-b1: Limkain b 97.8 0.00011 2.4E-09 52.3 6.5 67 131-207 3-75 (90)
154 KOG4210 Nuclear localization s 97.7 3.2E-05 6.9E-10 70.2 3.3 81 131-211 185-266 (285)
155 PF08777 RRM_3: RNA binding mo 97.5 0.00015 3.2E-09 55.5 4.8 57 131-193 2-58 (105)
156 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00046 1E-08 51.9 7.2 77 247-324 6-90 (100)
157 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00024 5.3E-09 46.9 4.9 52 248-306 2-53 (53)
158 KOG1995 Conserved Zn-finger pr 97.5 0.00014 3E-09 65.9 4.6 84 127-210 63-155 (351)
159 KOG1855 Predicted RNA-binding 97.5 0.00015 3.2E-09 67.0 4.8 66 245-310 229-307 (484)
160 KOG2314 Translation initiation 97.5 0.00027 5.9E-09 67.4 6.6 76 247-323 58-141 (698)
161 KOG0115 RNA-binding protein p5 97.5 0.00066 1.4E-08 58.7 8.4 99 185-323 7-111 (275)
162 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00056 1.2E-08 45.1 5.4 52 131-189 2-53 (53)
163 COG5175 MOT2 Transcriptional r 97.3 0.00043 9.4E-09 61.9 6.0 80 247-326 114-203 (480)
164 KOG4676 Splicing factor, argin 97.3 0.001 2.2E-08 60.8 7.9 82 248-329 8-92 (479)
165 KOG4849 mRNA cleavage factor I 97.2 0.00039 8.6E-09 62.4 3.8 75 130-204 80-157 (498)
166 KOG0129 Predicted RNA-binding 97.1 0.0016 3.5E-08 61.9 7.7 67 126-192 366-433 (520)
167 COG5175 MOT2 Transcriptional r 97.1 0.0011 2.5E-08 59.3 6.3 76 132-207 116-201 (480)
168 KOG3152 TBP-binding protein, a 97.1 0.00028 6.1E-09 60.9 2.4 69 249-317 76-157 (278)
169 KOG2314 Translation initiation 97.1 0.0015 3.2E-08 62.6 7.2 75 129-204 57-139 (698)
170 PF08952 DUF1866: Domain of un 96.9 0.0035 7.6E-08 50.1 7.0 56 262-325 51-106 (146)
171 KOG2416 Acinus (induces apopto 96.9 0.0013 2.9E-08 63.3 5.2 80 240-325 437-521 (718)
172 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0059 1.3E-07 46.0 7.5 76 130-206 6-89 (100)
173 KOG1996 mRNA splicing factor [ 96.8 0.0032 6.9E-08 55.5 6.6 76 248-323 282-364 (378)
174 PF15023 DUF4523: Protein of u 96.7 0.0069 1.5E-07 47.8 7.0 73 244-323 83-159 (166)
175 PF10309 DUF2414: Protein of u 96.7 0.011 2.4E-07 40.0 7.1 53 131-192 6-62 (62)
176 KOG0112 Large RNA-binding prot 96.7 0.00058 1.3E-08 68.8 0.8 98 244-342 369-467 (975)
177 KOG1855 Predicted RNA-binding 96.6 0.002 4.4E-08 59.7 3.8 69 125-193 226-307 (484)
178 KOG2202 U2 snRNP splicing fact 96.5 0.0013 2.8E-08 57.0 1.5 61 262-323 83-145 (260)
179 PF08675 RNA_bind: RNA binding 96.4 0.0095 2.1E-07 42.6 5.3 55 131-193 9-63 (87)
180 KOG2416 Acinus (induces apopto 96.3 0.0074 1.6E-07 58.3 5.9 76 126-207 440-520 (718)
181 KOG0115 RNA-binding protein p5 96.2 0.014 3E-07 50.7 6.4 74 131-205 32-110 (275)
182 PF08952 DUF1866: Domain of un 96.1 0.029 6.4E-07 44.9 7.2 55 146-208 52-106 (146)
183 PF15023 DUF4523: Protein of u 96.0 0.035 7.6E-07 43.9 7.1 74 127-207 83-160 (166)
184 PF08675 RNA_bind: RNA binding 95.9 0.031 6.7E-07 40.0 5.9 54 248-310 10-63 (87)
185 KOG2193 IGF-II mRNA-binding pr 95.8 0.0056 1.2E-07 56.7 2.4 76 248-329 2-79 (584)
186 KOG2202 U2 snRNP splicing fact 95.4 0.0084 1.8E-07 52.1 1.9 64 146-210 84-149 (260)
187 PF10309 DUF2414: Protein of u 95.0 0.16 3.5E-06 34.4 6.7 53 248-309 6-62 (62)
188 KOG1996 mRNA splicing factor [ 94.9 0.085 1.8E-06 46.8 6.5 64 144-207 300-365 (378)
189 KOG2253 U1 snRNP complex, subu 94.7 0.034 7.3E-07 54.8 4.0 71 243-322 36-107 (668)
190 PF10567 Nab6_mRNP_bdg: RNA-re 94.3 2.3 4.9E-05 38.2 13.9 179 125-310 10-212 (309)
191 KOG1999 RNA polymerase II tran 94.2 0.18 3.9E-06 52.1 7.9 34 170-203 208-241 (1024)
192 KOG4285 Mitotic phosphoprotein 94.0 0.14 3.1E-06 45.6 6.1 73 248-327 198-271 (350)
193 KOG2068 MOT2 transcription fac 93.7 0.029 6.2E-07 50.9 1.2 79 248-326 78-163 (327)
194 KOG4574 RNA-binding protein (c 93.6 0.11 2.4E-06 52.7 5.1 78 248-331 299-379 (1007)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 93.4 0.1 2.2E-06 44.0 4.0 66 130-195 7-78 (176)
196 KOG2135 Proteins containing th 93.4 0.074 1.6E-06 50.4 3.3 75 247-327 372-447 (526)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 93.1 0.085 1.8E-06 44.5 3.1 79 247-325 7-97 (176)
198 KOG2591 c-Mpl binding protein, 92.8 0.15 3.3E-06 49.3 4.5 69 248-323 176-249 (684)
199 KOG2135 Proteins containing th 92.7 0.1 2.3E-06 49.4 3.2 79 128-212 370-449 (526)
200 KOG2253 U1 snRNP complex, subu 92.3 0.021 4.5E-07 56.2 -1.9 167 120-310 30-197 (668)
201 PF04847 Calcipressin: Calcipr 92.1 0.44 9.5E-06 40.4 6.1 61 260-326 8-71 (184)
202 PF07292 NID: Nmi/IFP 35 domai 91.7 0.23 4.9E-06 36.4 3.4 71 175-268 1-73 (88)
203 PF07576 BRAP2: BRCA1-associat 91.7 1.6 3.6E-05 33.5 8.2 63 132-196 15-78 (110)
204 KOG4285 Mitotic phosphoprotein 91.2 0.75 1.6E-05 41.3 6.7 63 131-200 198-260 (350)
205 PF04147 Nop14: Nop14-like fam 89.8 0.17 3.7E-06 53.5 1.9 14 142-155 426-439 (840)
206 KOG2068 MOT2 transcription fac 89.8 0.15 3.3E-06 46.4 1.2 75 131-206 78-160 (327)
207 KOG4483 Uncharacterized conser 89.7 0.73 1.6E-05 42.9 5.5 61 129-196 390-451 (528)
208 KOG0804 Cytoplasmic Zn-finger 88.2 1.8 4E-05 41.1 7.1 64 130-195 74-138 (493)
209 KOG4574 RNA-binding protein (c 88.0 0.48 1E-05 48.3 3.4 80 130-215 298-380 (1007)
210 PF07576 BRAP2: BRCA1-associat 88.0 4.7 0.0001 31.0 8.1 65 248-314 14-80 (110)
211 PF11767 SET_assoc: Histone ly 87.4 2.9 6.3E-05 28.8 6.0 53 258-319 11-64 (66)
212 KOG2591 c-Mpl binding protein, 86.8 1.3 2.7E-05 43.2 5.3 73 126-205 171-248 (684)
213 PF04847 Calcipressin: Calcipr 81.4 5.9 0.00013 33.6 6.6 59 143-207 8-69 (184)
214 KOG2318 Uncharacterized conser 80.8 6.4 0.00014 38.8 7.3 80 244-323 171-305 (650)
215 PF03880 DbpA: DbpA RNA bindin 79.8 7 0.00015 27.6 5.7 57 258-323 12-74 (74)
216 KOG2318 Uncharacterized conser 77.3 15 0.00033 36.3 8.6 67 129-195 173-291 (650)
217 KOG0804 Cytoplasmic Zn-finger 76.7 7 0.00015 37.3 6.1 66 247-314 74-141 (493)
218 PF11767 SET_assoc: Histone ly 72.9 20 0.00043 24.7 6.1 46 141-195 11-56 (66)
219 KOG4019 Calcineurin-mediated s 72.7 5.3 0.00011 33.3 3.8 75 248-328 11-92 (193)
220 KOG4410 5-formyltetrahydrofola 70.5 12 0.00026 33.5 5.7 49 130-183 330-378 (396)
221 KOG4483 Uncharacterized conser 67.0 9.7 0.00021 35.8 4.6 63 245-313 389-451 (528)
222 PF03468 XS: XS domain; Inter 66.9 6.4 0.00014 30.6 3.0 53 248-303 9-70 (116)
223 PF10567 Nab6_mRNP_bdg: RNA-re 65.8 14 0.00031 33.3 5.2 83 243-325 11-107 (309)
224 TIGR02542 B_forsyth_147 Bacter 65.6 26 0.00056 26.9 5.8 45 255-299 82-129 (145)
225 PF14111 DUF4283: Domain of un 65.5 7.7 0.00017 31.5 3.5 118 132-280 17-138 (153)
226 PF03468 XS: XS domain; Inter 63.2 11 0.00023 29.4 3.6 50 132-184 10-68 (116)
227 COG5193 LHP1 La protein, small 62.4 4.1 8.8E-05 38.3 1.3 62 246-307 173-244 (438)
228 PF07530 PRE_C2HC: Associated 60.9 26 0.00056 24.3 4.8 60 262-324 2-63 (68)
229 KOG4365 Uncharacterized conser 59.5 1.7 3.8E-05 41.0 -1.6 77 248-325 4-81 (572)
230 KOG0526 Nucleosome-binding fac 57.9 3.5 7.7E-05 40.1 0.2 7 142-148 549-555 (615)
231 PF05285 SDA1: SDA1; InterPro 57.6 4.6 9.9E-05 37.7 0.8 11 140-150 229-239 (324)
232 KOG4410 5-formyltetrahydrofola 57.3 28 0.0006 31.3 5.5 48 247-299 330-377 (396)
233 PF11081 DUF2890: Protein of u 56.6 8.2 0.00018 32.5 2.1 7 265-271 177-183 (187)
234 KOG2891 Surface glycoprotein [ 56.2 8.8 0.00019 34.1 2.3 34 130-163 149-194 (445)
235 KOG2891 Surface glycoprotein [ 55.6 12 0.00025 33.4 2.9 36 246-281 148-195 (445)
236 PF03880 DbpA: DbpA RNA bindin 55.2 56 0.0012 22.9 6.0 58 140-206 11-74 (74)
237 KOG1999 RNA polymerase II tran 50.5 9.9 0.00021 40.0 1.9 16 255-270 447-462 (1024)
238 COG5193 LHP1 La protein, small 48.8 7.5 0.00016 36.6 0.7 64 128-191 172-245 (438)
239 KOG0262 RNA polymerase I, larg 48.8 67 0.0015 35.3 7.5 16 137-152 1448-1463(1640)
240 smart00596 PRE_C2HC PRE_C2HC d 48.5 46 0.001 23.1 4.3 59 262-323 2-62 (69)
241 KOG4213 RNA-binding protein La 47.6 22 0.00047 29.7 3.1 61 130-195 111-173 (205)
242 PF15513 DUF4651: Domain of un 45.9 54 0.0012 22.2 4.2 18 145-162 9-26 (62)
243 TIGR00927 2A1904 K+-dependent 42.2 9.8 0.00021 40.3 0.5 8 132-139 906-913 (1096)
244 KOG0699 Serine/threonine prote 42.1 14 0.00031 34.3 1.5 7 131-137 342-348 (542)
245 KOG2295 C2H2 Zn-finger protein 38.7 7.6 0.00016 38.1 -0.9 65 246-310 230-294 (648)
246 PF07530 PRE_C2HC: Associated 37.7 1.3E+02 0.0028 20.8 5.4 60 145-207 2-63 (68)
247 KOG0299 U3 snoRNP-associated p 37.2 60 0.0013 31.3 4.7 15 264-278 279-293 (479)
248 PF09073 BUD22: BUD22; InterP 35.1 33 0.00071 33.6 2.8 12 255-266 405-416 (432)
249 PRK11634 ATP-dependent RNA hel 34.8 2.2E+02 0.0049 29.4 8.9 66 249-324 488-561 (629)
250 KOG4434 Molecular chaperone SE 34.8 23 0.0005 33.0 1.6 9 171-179 452-460 (520)
251 KOG4008 rRNA processing protei 34.7 27 0.00059 30.5 1.9 32 247-278 40-71 (261)
252 PF07292 NID: Nmi/IFP 35 domai 32.9 68 0.0015 23.5 3.5 32 292-323 1-34 (88)
253 KOG1980 Uncharacterized conser 32.1 16 0.00034 36.7 0.1 10 312-321 674-683 (754)
254 KOG2295 C2H2 Zn-finger protein 30.6 7 0.00015 38.3 -2.5 63 131-193 232-294 (648)
255 KOG4008 rRNA processing protei 28.6 50 0.0011 28.9 2.5 34 127-160 37-70 (261)
256 PF05764 YL1: YL1 nuclear prot 28.4 17 0.00036 32.4 -0.4 9 257-265 183-191 (240)
257 KOG4213 RNA-binding protein La 28.1 90 0.0019 26.2 3.8 59 247-310 111-171 (205)
258 PF09073 BUD22: BUD22; InterP 27.9 52 0.0011 32.2 2.9 20 299-318 409-429 (432)
259 PF15407 Spo7_2_N: Sporulation 27.6 24 0.00051 24.4 0.3 24 129-152 26-49 (67)
260 PF08206 OB_RNB: Ribonuclease 27.5 15 0.00032 24.5 -0.7 37 288-324 7-44 (58)
261 KOG3130 Uncharacterized conser 26.6 28 0.00062 32.8 0.8 21 134-154 354-374 (514)
262 KOG0156 Cytochrome P450 CYP2 s 25.2 1.2E+02 0.0027 30.2 5.0 60 133-201 35-97 (489)
263 COG0030 KsgA Dimethyladenosine 24.6 94 0.002 28.0 3.6 34 248-281 96-129 (259)
264 PF07423 DUF1510: Protein of u 24.3 46 0.00099 29.1 1.6 9 144-152 152-160 (217)
265 COG0445 GidA Flavin-dependent 24.0 2E+02 0.0042 29.1 5.9 47 244-298 298-344 (621)
266 COG0030 KsgA Dimethyladenosine 23.6 1.4E+02 0.0031 26.9 4.6 50 130-195 95-144 (259)
267 PRK14548 50S ribosomal protein 23.3 3E+02 0.0065 20.0 5.9 57 133-192 23-81 (84)
268 PF11823 DUF3343: Protein of u 23.1 1E+02 0.0022 21.4 3.0 28 290-317 2-30 (73)
269 PF03896 TRAP_alpha: Transloco 23.1 22 0.00048 32.4 -0.6 6 132-137 86-91 (285)
270 PF02714 DUF221: Domain of unk 22.8 94 0.002 28.8 3.5 31 292-323 1-31 (325)
271 KOG3702 Nuclear polyadenylated 22.5 1.8E+02 0.004 29.6 5.4 75 129-203 510-584 (681)
272 KOG4365 Uncharacterized conser 22.4 17 0.00037 34.7 -1.5 74 132-206 5-79 (572)
273 PF00398 RrnaAD: Ribosomal RNA 22.3 90 0.0019 28.1 3.2 28 247-274 97-126 (262)
274 KOG0772 Uncharacterized conser 22.2 72 0.0016 31.4 2.5 18 125-142 174-191 (641)
275 KOG0156 Cytochrome P450 CYP2 s 22.0 1.6E+02 0.0034 29.4 5.0 59 251-318 36-97 (489)
276 KOG2236 Uncharacterized conser 21.9 3.2E+02 0.007 26.7 6.7 12 174-185 261-272 (483)
277 KOG0772 Uncharacterized conser 21.5 43 0.00093 32.9 0.9 18 286-303 475-492 (641)
278 KOG2897 DNA-binding protein YL 21.2 79 0.0017 29.8 2.5 85 32-116 26-111 (390)
279 TIGR03636 L23_arch archaeal ri 21.2 3.1E+02 0.0068 19.5 5.9 58 132-192 15-74 (77)
280 PF04026 SpoVG: SpoVG; InterP 21.0 1.6E+02 0.0034 21.4 3.5 26 273-298 2-27 (84)
281 PF03439 Spt5-NGN: Early trans 21.0 1.7E+02 0.0036 21.1 3.8 34 273-311 33-66 (84)
282 PF02714 DUF221: Domain of unk 20.9 1.9E+02 0.004 26.8 5.1 20 175-194 1-20 (325)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3e-34 Score=265.81 Aligned_cols=173 Identities=24% Similarity=0.401 Sum_probs=153.5
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+++|+++|+++|..||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++. +.++.|.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44556789999999999999999999999999999999999999999999999999999999999988865 89999999
Q ss_pred EEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecC
Q 016219 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (393)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~ 283 (393)
.++..... ....++|||+|||+.+|+++|+++|++||.|+.|+|++++
T Consensus 182 ~~a~p~~~--------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 182 SYARPGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred eccccccc--------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 87642110 1123589999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEcccCCCC
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGPKP 329 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a~~~~~~ 329 (393)
.+++++|||||+|.+.++|.+||..|| ..+.| +.|+|.++....+.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 999999999999999999999999999 66655 78999998865443
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-34 Score=241.83 Aligned_cols=182 Identities=26% Similarity=0.458 Sum_probs=157.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
..+.-|||+.|...++-+.|++.|.+||.|.+++|++|..|+++|||+||.|-..++|++||..||+. |.+|.|+..|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 33668999999999999999999999999999999999999999999999999999999999999987 78999999999
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC
Q 016219 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (393)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g 286 (393)
..++....... ..-...-.+.....++||||||+.-+|++.||+.|++||.|..|||+++
T Consensus 140 TRKp~e~n~~~----------------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---- 199 (321)
T KOG0148|consen 140 TRKPSEMNGKP----------------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---- 199 (321)
T ss_pred ccCccccCCCC----------------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----
Confidence 87763221111 0011112234556789999999999999999999999999999999988
Q ss_pred CCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCCCC
Q 016219 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPGK 331 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~~~ 331 (393)
+||+||.|.+.++|.+||..+| ..|.|+.++|.|.+.......
T Consensus 200 --qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 200 --QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred --cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 8999999999999999999999 899999999999987655433
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5e-33 Score=270.34 Aligned_cols=182 Identities=20% Similarity=0.418 Sum_probs=156.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+.+|.+||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999998866 89999999753
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC
Q 016219 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (393)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g 286 (393)
...+...... ..........++|||+|||+.+++++|+++|+.||.|.+|+|++|+.+|
T Consensus 185 ~~~p~a~~~~---------------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg 243 (612)
T TIGR01645 185 SNMPQAQPII---------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 243 (612)
T ss_pred cccccccccc---------------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Confidence 3211100000 0000111234699999999999999999999999999999999999999
Q ss_pred CCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCCC
Q 016219 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~~ 330 (393)
+++|||||+|.+.++|.+||..|| ..|+|+.|+|.++...+...
T Consensus 244 ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 244 GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 999999999999999999999999 89999999999998766554
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=6.2e-31 Score=249.41 Aligned_cols=201 Identities=20% Similarity=0.294 Sum_probs=152.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC--eeeEEE
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN--RMTACQ 204 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g--~~i~v~ 204 (393)
...++|||+|||+.+++++|+.+|.+||.|..++++.+..++.++|||||+|.+.++|..|+..+++. +.| +.+.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 35678999999999999999999999999999999999889999999999999999999999999976 444 567777
Q ss_pred EccCCCCCCCCC------------CCc-------------ccc--cccc-----------------cccccc---cccc-
Q 016219 205 LASIGPATTPAV------------AST-------------ATH--QHQH-----------------QHQHQH---QHQH- 236 (393)
Q Consensus 205 ~~~~~~~~~~~~------------~~~-------------~~~--~~~~-----------------~~~~~~---~~~~- 236 (393)
++.......... ... ... .... ....+. ....
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 764322110000 000 000 0000 000000 0000
Q ss_pred ------------cccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHH
Q 016219 237 ------------QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKK 304 (393)
Q Consensus 237 ------------~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~ 304 (393)
....+.....+.+|||+|||+.+++++|+++|++||.|.+|+|++|+.+|.++|||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 00000112234579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC-CccCCeEEEEEEcccCCC
Q 016219 305 ALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 305 Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
||..|| ..|.||.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999 899999999999987653
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=1.1e-30 Score=256.16 Aligned_cols=181 Identities=25% Similarity=0.378 Sum_probs=154.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~ 204 (393)
......++|||+|||+.+++.+|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||...+..+.|+.|.|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999877677999999998
Q ss_pred EccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCC
Q 016219 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (393)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~ 284 (393)
++........... ..........++|||+|||+.+|+++|+++|+.||.|..|.|++++.
T Consensus 164 ~~~~~~~~~~~~~--------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~ 223 (457)
T TIGR01622 164 SSQAEKNRAAKAA--------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE 223 (457)
T ss_pred ecchhhhhhhhcc--------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 7543211110000 00001122367999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 285 ~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.|+..
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999999999999999999999999 899999999999874
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=7.1e-32 Score=241.81 Aligned_cols=173 Identities=23% Similarity=0.356 Sum_probs=149.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc--cCCe--e
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNR--M 200 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~--~~g~--~ 200 (393)
..+.+.-++|||.||..|+|.+|+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..++.. +.|- .
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 33455568999999999999999999999999999999999999999999999999999999999998843 5554 4
Q ss_pred eEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeee
Q 016219 201 TACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG 280 (393)
Q Consensus 201 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~ 280 (393)
|.|+++...... ....++||||-|+..+|+.+|+++|++||.|+.|.|+
T Consensus 109 vqvk~Ad~E~er-------------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 109 VQVKYADGERER-------------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred eeecccchhhhc-------------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 555554322211 1234689999999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEEecCHHHHHHHHHcCC--CccCC--eEEEEEEcccCCCC
Q 016219 281 IDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEG--HILNCQRAIDGPKP 329 (393)
Q Consensus 281 ~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~--~~~~G--~~l~V~~a~~~~~~ 329 (393)
+|. .+.+||||||+|.+.+.|..||+.|| .++.| .+|.|+||.+....
T Consensus 158 rd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 158 RDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 984 79999999999999999999999999 67887 78999999886544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.4e-30 Score=245.32 Aligned_cols=166 Identities=25% Similarity=0.398 Sum_probs=148.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
..+|||+|||+.+++++|+++|++||+|..|+|++++.+|+++|||||+|.+.++|.+||..+++. +.|+.|.|.++..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 468999999999999999999999999999999999999999999999999999999999998865 8999999988642
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
... .....+|||+|||+.+++++|+.+|++||.|..++|+.+..++.+
T Consensus 83 ~~~--------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~ 130 (352)
T TIGR01661 83 SSD--------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLS 130 (352)
T ss_pred ccc--------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCc
Confidence 211 112358999999999999999999999999999999999888999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEcccCC
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGP 327 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a~~~~ 327 (393)
+|||||+|.+.++|..||..|| ..+.| +.|.|.|+....
T Consensus 131 ~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 131 KGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999999999999999999999 66666 678888886544
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=232.84 Aligned_cols=199 Identities=19% Similarity=0.302 Sum_probs=151.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c-CCeeeEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-GNRMTAC 203 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~-~g~~i~v 203 (393)
..+.++.||||.||.++.+++|..+|.+.|+|-++|||+|+.+|.+||||||.|.+.+.|+.|++.+|.. | .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999965 4 8999988
Q ss_pred EEccCCCCCCCCCCC---------------------------------ccccccc-----------ccccccccccc---
Q 016219 204 QLASIGPATTPAVAS---------------------------------TATHQHQ-----------HQHQHQHQHQH--- 236 (393)
Q Consensus 204 ~~~~~~~~~~~~~~~---------------------------------~~~~~~~-----------~~~~~~~~~~~--- 236 (393)
+.+..+........+ +...... .+.......+.
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 876422111000000 0000000 00000000000
Q ss_pred ----------cccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHH
Q 016219 237 ----------QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (393)
Q Consensus 237 ----------~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al 306 (393)
..........-+.|||+||+.++|++.|.++|+.||.|+.|+.++| ||||.|.+.++|.+|+
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAM 310 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHH
Confidence 0000112223478999999999999999999999999999998865 9999999999999999
Q ss_pred HcCC-CccCCeEEEEEEcccCCCCCCC
Q 016219 307 EEPH-KNFEGHILNCQRAIDGPKPGKS 332 (393)
Q Consensus 307 ~~~~-~~~~G~~l~V~~a~~~~~~~~~ 332 (393)
+.+| ..|+|..|.|.+|++..+....
T Consensus 311 ~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 311 KETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHhcCceecCceEEEEecCChhhhccc
Confidence 9999 8999999999999987655443
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.2e-28 Score=247.29 Aligned_cols=164 Identities=24% Similarity=0.437 Sum_probs=147.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCCC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGP 210 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~~ 210 (393)
+|||||||+++|+++|+++|++||.|.+|+|+++..+++++|||||+|.+.++|.+||..++.. +.|+.|+|.++...+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999876 899999998865332
Q ss_pred CCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCcc
Q 016219 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (393)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg 290 (393)
... .....+|||+|||.++++++|+++|+.||.|..|+|+++ .+|+++|
T Consensus 82 ~~~------------------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg 130 (562)
T TIGR01628 82 SLR------------------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRG 130 (562)
T ss_pred ccc------------------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCccc
Confidence 210 112347999999999999999999999999999999987 4788999
Q ss_pred EEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 291 ~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
||||+|.+.++|.+|+..+| ..+.|+.|.|.....+
T Consensus 131 ~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 131 YGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred EEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 99999999999999999999 8899999999776544
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.5e-29 Score=210.56 Aligned_cols=241 Identities=19% Similarity=0.268 Sum_probs=178.3
Q ss_pred CchhhhcccCCCchHHHHHHHHHHHh-----------------------------hchhhhhhhhcccCCCCCcCeEEEc
Q 016219 86 DDEPILSLLEPFSKDQLVNLLREAAE-----------------------------NHRDVASRVRQVADEDPVHRKIFVH 136 (393)
Q Consensus 86 ~~e~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~vfV~ 136 (393)
-++++++++...++.+.+++++++.. ..+.....-.+...+..+...|||.
T Consensus 54 TqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvS 133 (360)
T KOG0145|consen 54 TQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVS 133 (360)
T ss_pred CHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEe
Confidence 34567777777777777777776543 0011111112444556677899999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCcc---CCeeeEEEEccCCCCCC
Q 016219 137 GLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKI---GNRMTACQLASIGPATT 213 (393)
Q Consensus 137 nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~---~g~~i~v~~~~~~~~~~ 213 (393)
+||.++|..+|..+|++||.|..-||+.|..+|.+||.+||.|.....|..||..+|+.. ....|.|.++.......
T Consensus 134 GlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 134 GLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred cCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999764 34578888875332211
Q ss_pred CCC----------CCccc-cccccccc-----ccc-----cc----------cccccCCccccccceeeecCCCCCCcHH
Q 016219 214 PAV----------ASTAT-HQHQHQHQ-----HQH-----QH----------QHQQHHQQSEYTQRKIFVSNVGSELEPQ 262 (393)
Q Consensus 214 ~~~----------~~~~~-~~~~~~~~-----~~~-----~~----------~~~~~~~~~~~~~~~lfV~nLp~~~t~~ 262 (393)
... +.... .+...+.. .+. .. ......+.....+-+|||.||.+++++.
T Consensus 214 ~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~ 293 (360)
T KOG0145|consen 214 NQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADES 293 (360)
T ss_pred chhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHh
Confidence 100 00000 00000000 000 00 0000122334456799999999999999
Q ss_pred HHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 263 KLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 263 ~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
-|+++|.+||.|..|+|++|..|+++||||||++.+.++|..||..|| ..+.+|.|.|.|...+
T Consensus 294 ~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 294 ILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999 8999999999997654
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3.4e-28 Score=243.94 Aligned_cols=184 Identities=23% Similarity=0.404 Sum_probs=151.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cC----Ceee
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IG----NRMT 201 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~----g~~i 201 (393)
....++|||+|||+++|+++|+++|+.||.|.+++++++. +|+++|||||.|.+.++|.+|++.+++. +. |+.+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3455789999999999999999999999999999999986 7899999999999999999999999866 66 8888
Q ss_pred EEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeee
Q 016219 202 ACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (393)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~ 281 (393)
.|.++........... .................+|||+||++.+|+++|+++|+.||.|.+|+|++
T Consensus 254 ~v~~a~~k~er~~~~~--------------~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 254 YVGRAQKRAEREAELR--------------RKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred EeecccChhhhHHHHH--------------hhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 8877643322100000 00000001111233456899999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 282 d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
+ .+|.++|||||+|.+.++|.+|+..|| ..|.|+.|.|.+|..+
T Consensus 320 d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 320 D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 8 689999999999999999999999999 8999999999999865
No 12
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=9.4e-29 Score=197.69 Aligned_cols=170 Identities=25% Similarity=0.365 Sum_probs=152.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~~ 208 (393)
..|||||||+..+++.-|.++|-+.|+|.+++|++++.+...+|||||+|.+.++|+-|++.++. ++.||+|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999994 48999999998862
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeE-EeeeecCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKATGK 287 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~-v~i~~d~~~g~ 287 (393)
... ....+.+|||+||.+.+++..|...|+.||.|.. ..|++++.||.
T Consensus 89 ~~~-------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 89 HQK-------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN 137 (203)
T ss_pred ccc-------------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC
Confidence 211 2233469999999999999999999999999776 58899999999
Q ss_pred CccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCCC
Q 016219 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (393)
Q Consensus 288 ~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~~ 330 (393)
++|||||.|.+.+.+.+|+..|| ..+..|+|+|.++..+...+
T Consensus 138 ~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 138 PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 99999999999999999999999 78888999999998665433
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.2e-27 Score=230.89 Aligned_cols=193 Identities=18% Similarity=0.263 Sum_probs=142.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c-CCeeeEEEE
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-GNRMTACQL 205 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~-~g~~i~v~~ 205 (393)
...++|||+|||+++++++|+++|++||.|..|+|+++ .+|+++|||||+|.+.++|.+||+.+++. + .|+.+.|..
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 45689999999999999999999999999999999999 69999999999999999999999999864 4 466665554
Q ss_pred ccCCCCCC------CCC--------------------------CCcccc-----------ccccc-ccc-------ccc-
Q 016219 206 ASIGPATT------PAV--------------------------ASTATH-----------QHQHQ-HQH-------QHQ- 233 (393)
Q Consensus 206 ~~~~~~~~------~~~--------------------------~~~~~~-----------~~~~~-~~~-------~~~- 233 (393)
+....... ... ...... +.... ... ...
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 32100000 000 000000 00000 000 000
Q ss_pred ----c-cccccCCccccccceeeecCCCCCCcHHHHHHHHhcC--CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHH
Q 016219 234 ----H-QHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (393)
Q Consensus 234 ----~-~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~--G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al 306 (393)
. .............++|||+|||+.+|+++|+++|+.| |.|+.|+++ ++||||+|.+.++|.+|+
T Consensus 215 ~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 215 AVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 0 0000011112335789999999999999999999999 999999875 569999999999999999
Q ss_pred HcCC-CccCCeEEEEEEcccCCCC
Q 016219 307 EEPH-KNFEGHILNCQRAIDGPKP 329 (393)
Q Consensus 307 ~~~~-~~~~G~~l~V~~a~~~~~~ 329 (393)
..|| ..|.|+.|+|.|+.+....
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 9999 8999999999999876543
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=224.30 Aligned_cols=192 Identities=21% Similarity=0.326 Sum_probs=156.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~~ 208 (393)
+.||||++||+.++.++|.++|+.+|+|..+.++.++.++.+|||+||.|+..+++++|+....+ ++.||.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999998885 59999999998875
Q ss_pred CCCCCCCCCCcccccccccccccccccccccC--CccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHH--QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g 286 (393)
+............ .......+... ........+|+|+||||.+...+|..+|+.||.|..|.|++.+..+
T Consensus 85 R~r~e~~~~~e~~--------~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 85 RARSEEVEKGENK--------AVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred cccchhcccccch--------hhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 5443311100000 00000000000 0112225699999999999999999999999999999999876666
Q ss_pred CCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCCC
Q 016219 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~~ 330 (393)
.+ |||||.|....+|..||..+| +.|.||+|-|.||.++....
T Consensus 157 lc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 157 LC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred cc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 65 999999999999999999999 89999999999999887653
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.3e-28 Score=204.00 Aligned_cols=168 Identities=23% Similarity=0.392 Sum_probs=150.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
....|.|.-||..+|.++|+.+|...|.|++|++++|+.+|++-||+||.|.++.+|.+|+..+|+- +..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 3457899999999999999999999999999999999999999999999999999999999999965 899999998875
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~ 287 (393)
... .......|||.+||..+|..+|.++|++||.|..-||+.|.-+|.
T Consensus 120 PSs--------------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~ 167 (360)
T KOG0145|consen 120 PSS--------------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL 167 (360)
T ss_pred CCh--------------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce
Confidence 322 223345899999999999999999999999999999999999999
Q ss_pred CccEEEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEcccCCC
Q 016219 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGPK 328 (393)
Q Consensus 288 ~kg~aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a~~~~~ 328 (393)
+||.|||.|....+|..||..|| ..-.| .+|.|.||.....
T Consensus 168 srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 168 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 99999999999999999999999 55555 7899999875543
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.4e-27 Score=235.69 Aligned_cols=194 Identities=18% Similarity=0.269 Sum_probs=142.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQY------------GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~------------G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 192 (393)
..+...++|||||||+.+|+++|.++|..| +.|..+. .++.+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345668999999999999999999999975 2333333 34568999999999999999996 5
Q ss_pred CC-ccCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcC
Q 016219 193 QK-KIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKY 271 (393)
Q Consensus 193 ~~-~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~ 271 (393)
++ .+.|+.|.|................. ........................++|||+|||+.+|+++|+++|+.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVS---QKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCC---CCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 54 58999988865432211100000000 000000000000000111123345799999999999999999999999
Q ss_pred CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 272 GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 272 G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
|.|..+.|+.++.+|.++|||||+|.+.++|..||..|+ ..|.|+.|.|.++.....
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~ 377 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN 377 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCC
Confidence 999999999999999999999999999999999999999 899999999999975543
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=216.85 Aligned_cols=198 Identities=22% Similarity=0.358 Sum_probs=153.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
--+|.|+|||+.+...+|+.+|+.||.|..|.|++.+ .|+-.|||||.|....+|..||+.+|+. |.||.|.|.|+..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 4589999999999999999999999999999999776 5555599999999999999999999954 9999999999875
Q ss_pred CCCCCCCCCCc--------------c----ccc-----------cccc--c---------------------c--cccc-
Q 016219 209 GPATTPAVAST--------------A----THQ-----------HQHQ--H---------------------Q--HQHQ- 233 (393)
Q Consensus 209 ~~~~~~~~~~~--------------~----~~~-----------~~~~--~---------------------~--~~~~- 233 (393)
........... . ... .... . . +...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 43332211000 0 000 0000 0 0 0000
Q ss_pred --cccccc-CCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 234 --HQHQQH-HQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 234 --~~~~~~-~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
...+.. .+....-+.+|||+||||++|++.|.++|++||.|.++.|+.++.||.++|.|||.|.+...|..||.+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000000 12223345899999999999999999999999999999999999999999999999999999999999982
Q ss_pred -------CccCCeEEEEEEcccCCC
Q 016219 311 -------KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 311 -------~~~~G~~l~V~~a~~~~~ 328 (393)
..|.||.|.|..|..+..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 468899999999987654
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.7e-25 Score=222.43 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=147.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+++|..||.|..+.|+++..+|.++|||||+|.+.++|..||..|++. |.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 478999999999999999999999999999999999999999999999999999999999999866 8999999999875
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCC----------cHHHHHHHHhcCCCeeEEe
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSEL----------EPQKLLAFFSKYGEIEEGP 278 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~----------t~~~L~~~F~~~G~I~~v~ 278 (393)
............. ...... ..............++++|+|.||.... ..++|+++|++||.|+.|.
T Consensus 375 ~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~ 450 (509)
T TIGR01642 375 GANQATIDTSNGM--APVTLL--AKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIV 450 (509)
T ss_pred CCCCCCccccccc--cccccc--cccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEE
Confidence 4332221111000 000000 0000000001123456789999996421 2368999999999999999
Q ss_pred eeecC---CCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 279 LGIDK---ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 279 i~~d~---~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
|+++. .++.+.|+|||+|.+.++|.+|+..|| ..|.|+.|.|.|..
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 98752 346678999999999999999999999 89999999999964
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.2e-25 Score=216.38 Aligned_cols=191 Identities=14% Similarity=0.165 Sum_probs=142.2
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 128 PVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 128 ~~~~~vfV~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
+.+++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|..||..|++. |.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4578999999998 69999999999999999999998863 689999999999999999988865 8999999998
Q ss_pred ccCCCCCCCCCCCcccccc--cccccccccccc---cccCCccccccceeeecCCCCCCcHHHHHHHHhcCCC--eeEEe
Q 016219 206 ASIGPATTPAVASTATHQH--QHQHQHQHQHQH---QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE--IEEGP 278 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~--I~~v~ 278 (393)
+.................. .........+.. .........++++|||+|||.++|+++|+++|+.||. |..|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 7543222111000000000 000000000000 0001112346689999999999999999999999998 88888
Q ss_pred eeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeE------EEEEEccc
Q 016219 279 LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI------LNCQRAID 325 (393)
Q Consensus 279 i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~------l~V~~a~~ 325 (393)
+.... +..+|+|||+|.+.++|..||..|| ..|.|+. |+|.|+.+
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 87543 2358999999999999999999999 7898885 88888764
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=9.6e-25 Score=213.85 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=135.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC--C-CccCCeeeEEEEc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP--Q-KKIGNRMTACQLA 206 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~--~-~~~~g~~i~v~~~ 206 (393)
+++|||+|||+.+++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|+..+ + ..+.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 57999999999999999999999999999999885 3579999999999999999864 3 4589999999998
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC
Q 016219 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (393)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g 286 (393)
............ ..........+|||+||++.+|+++|+++|+.||.|.+|.|+++..
T Consensus 76 ~~~~~~~~~~~~--------------------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-- 133 (481)
T TIGR01649 76 TSQEIKRDGNSD--------------------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-- 133 (481)
T ss_pred CCcccccCCCCc--------------------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--
Confidence 644321111000 0000111234799999999999999999999999999999987532
Q ss_pred CCccEEEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEcccC
Q 016219 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDG 326 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a~~~ 326 (393)
+|+|||+|.+.++|.+|+..|| ..|.| ++|+|.|+...
T Consensus 134 --~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 134 --VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred --ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 4799999999999999999999 66654 68999998753
No 21
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=200.36 Aligned_cols=177 Identities=27% Similarity=0.533 Sum_probs=161.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccC
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 208 (393)
+.++||||+|++.++++.|+.+|.+||.|..|.+++++.+++++||+||.|+++..+..+|....+.|.|+.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
+........ ....++|||++||..+++.+++.+|.+||.|..+.++.|..+.++
T Consensus 85 r~~~~~~~~--------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~ 138 (311)
T KOG4205|consen 85 REDQTKVGR--------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP 138 (311)
T ss_pred ccccccccc--------------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc
Confidence 655433322 125579999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEcccCCCCCC
Q 016219 289 KGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPKPGK 331 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~~~~~~~ 331 (393)
+||+||.|.+.+++.+++..--+.|+|+.+.|..|.++.....
T Consensus 139 rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 139 RGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ccceeeEeccccccceecccceeeecCceeeEeeccchhhccc
Confidence 9999999999999999988877999999999999998765443
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.4e-26 Score=199.08 Aligned_cols=180 Identities=21% Similarity=0.416 Sum_probs=154.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
-++||||.|.+.+.++.|+..|..||+|.+|.|-.|+.|++++|||||+|.-++.|+.|++.+|+. ++||.|.|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999976 7999999875432
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
-+...+.. ..-......-.+|||..+.++.+++||+.+|+.||+|++|.+.+++..+.+
T Consensus 193 mpQAQpiI---------------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 193 MPQAQPII---------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred CcccchHH---------------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 21110000 000011223469999999999999999999999999999999999988999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCCC
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~~ 330 (393)
|||||++|.+..+...|+..|| +.++|.-|+|..+...+...
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchh
Confidence 9999999999999999999999 89999999999888766554
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=3.3e-23 Score=203.21 Aligned_cols=192 Identities=20% Similarity=0.294 Sum_probs=143.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
..++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|++. |.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3689999999999999999999999999999999999989999999999999999999999998865 899999999965
Q ss_pred CCCCCCCCCCC-----------c---ccc---------------------ccc----ccccc---------c----ccc-
Q 016219 208 IGPATTPAVAS-----------T---ATH---------------------QHQ----HQHQH---------Q----HQH- 234 (393)
Q Consensus 208 ~~~~~~~~~~~-----------~---~~~---------------------~~~----~~~~~---------~----~~~- 234 (393)
........... . ... ... ..... . ...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 22111000000 0 000 000 00000 0 000
Q ss_pred ---cccc-c-CCccccccceeeecCCCCCCc----------HHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCH
Q 016219 235 ---QHQQ-H-HQQSEYTQRKIFVSNVGSELE----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV 299 (393)
Q Consensus 235 ---~~~~-~-~~~~~~~~~~lfV~nLp~~~t----------~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~ 299 (393)
.... . ........++|+|.||....+ .++|++.|++||.|+.|.|.. ..+.|++||+|.++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCH
Confidence 0000 0 001234668999999965444 368999999999999999863 34589999999999
Q ss_pred HHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 300 DAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 300 ~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
++|.+|+..|| ..|+|+.|.|.+..
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 99999999999 89999999999864
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=2.5e-25 Score=206.35 Aligned_cols=193 Identities=20% Similarity=0.338 Sum_probs=161.8
Q ss_pred hhhcccCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCC
Q 016219 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN 198 (393)
Q Consensus 119 ~~~~~~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g 198 (393)
........+.+.||||+-.|+..++..+|.+||+.+|+|..|+|+.|+.+++++|.|||+|.+.+.+..||...+..+.|
T Consensus 168 ~~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg 247 (549)
T KOG0147|consen 168 ASRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLG 247 (549)
T ss_pred ccccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccC
Confidence 34455667778899999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred eeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEe
Q 016219 199 RMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP 278 (393)
Q Consensus 199 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~ 278 (393)
.+|.|+............. . .........+..+|||+||.+++++++|+.+|++||.|..|.
T Consensus 248 ~pv~vq~sEaeknr~a~~s---~---------------a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~ 309 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAANAS---P---------------ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQ 309 (549)
T ss_pred ceeEecccHHHHHHHHhcc---c---------------cccccccccchhhhhhcccccCchHHHHhhhccCcccceeee
Confidence 9999987643322200000 0 000011233334599999999999999999999999999999
Q ss_pred eeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCC
Q 016219 279 LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (393)
Q Consensus 279 i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~ 329 (393)
+++|..||.++|||||+|.+.++|.+|+..|| +.|.||.|+|.....+-..
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 99998899999999999999999999999999 8999999999887665443
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=4.5e-24 Score=182.78 Aligned_cols=149 Identities=21% Similarity=0.411 Sum_probs=135.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCCC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGP 210 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~~ 210 (393)
+|||||||..+++.+|+.+|++||+|++|.|+++ ||||...+...|..||..|++. |.|..|.|..+..+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999999875 8999999999999999988764 999999998876441
Q ss_pred CCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCcc
Q 016219 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (393)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg 290 (393)
...++|+|+||.+.++..+|+..|.+||+|..|.|+ ++
T Consensus 76 ----------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kd 113 (346)
T KOG0109|consen 76 ----------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KD 113 (346)
T ss_pred ----------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cc
Confidence 123589999999999999999999999999999998 56
Q ss_pred EEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCCC
Q 016219 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (393)
Q Consensus 291 ~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~~ 330 (393)
|+||.|...++|..|++.|+ ..|.|++++|++..++-...
T Consensus 114 y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 99999999999999999999 89999999999998765543
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.9e-24 Score=194.32 Aligned_cols=244 Identities=20% Similarity=0.315 Sum_probs=173.7
Q ss_pred CCCCchhhhcccCCCchHHHHHHHHHHHhhc------------hhhhhhhh-----------------ccc----CCCCC
Q 016219 83 DEEDDEPILSLLEPFSKDQLVNLLREAAENH------------RDVASRVR-----------------QVA----DEDPV 129 (393)
Q Consensus 83 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-----------------~~~----~~~~~ 129 (393)
....+.+++.++++++.+.++.+++++.... ++....+. +.+ ..-..
T Consensus 44 rt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~ 123 (510)
T KOG0144|consen 44 RTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVE 123 (510)
T ss_pred ccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcccc
Confidence 3445566788888888887777777754310 00000000 111 11234
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc--c--CCeeeEEEE
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--I--GNRMTACQL 205 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~--~--~g~~i~v~~ 205 (393)
.++||||.|+..+|+.+++++|++||.|++|+|+++. .+.+||||||.|.+.+.|..||+.+|+. + +..+|.|++
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 6899999999999999999999999999999999998 8999999999999999999999999965 4 445778887
Q ss_pred ccCCCCCC------------------------------------------------------------------------
Q 016219 206 ASIGPATT------------------------------------------------------------------------ 213 (393)
Q Consensus 206 ~~~~~~~~------------------------------------------------------------------------ 213 (393)
+.......
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 64100000
Q ss_pred -------CCCCCcccccccccc------c-----------------c-----ccc-------------------------
Q 016219 214 -------PAVASTATHQHQHQH------Q-----------------H-----QHQ------------------------- 233 (393)
Q Consensus 214 -------~~~~~~~~~~~~~~~------~-----------------~-----~~~------------------------- 233 (393)
........+...... . . +..
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 000000000000000 0 0 000
Q ss_pred ------------------------------------------------ccccccCCccccccceeeecCCCCCCcHHHHH
Q 016219 234 ------------------------------------------------HQHQQHHQQSEYTQRKIFVSNVGSELEPQKLL 265 (393)
Q Consensus 234 ------------------------------------------------~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~ 265 (393)
.............+..|||++||.+.-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 00000111223456789999999999999999
Q ss_pred HHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCC
Q 016219 266 AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (393)
Q Consensus 266 ~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~ 327 (393)
..|.+||.|.+.++..|+.||.++.|+||.|.+..+|..||..|| ..|++++++|....++.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999999999999999999999999999999 89999999999976553
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=4.7e-24 Score=203.08 Aligned_cols=173 Identities=25% Similarity=0.360 Sum_probs=146.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG---KSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~---~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
+|||.||++++|.++|..+|.++|.|..+.|...+... .|.|||||+|.++++|+.|++.|+++ |.|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999887655321 36699999999999999999999955 899999999987
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~ 287 (393)
..+...... .......++.|+|+|||+..+..+|+.+|..||.|.+|+|+.-...+.
T Consensus 597 ~k~~~~~gK-----------------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a 653 (725)
T KOG0110|consen 597 NKPASTVGK-----------------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGA 653 (725)
T ss_pred Ccccccccc-----------------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchh
Confidence 332221110 011122267999999999999999999999999999999997655677
Q ss_pred CccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCC
Q 016219 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (393)
Q Consensus 288 ~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~ 327 (393)
++|||||+|-++.+|..|+.+|. ..|.||+|.+.||....
T Consensus 654 ~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 654 HRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 89999999999999999999999 88999999999997643
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.6e-24 Score=181.14 Aligned_cols=198 Identities=21% Similarity=0.342 Sum_probs=149.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc--cCC--eeeEEE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGN--RMTACQ 204 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~--~~g--~~i~v~ 204 (393)
+.|+||||-|...-.+++++.+|..||.|.+|.+++.+ .|.+||||||.|.+..+|..||..+++. +.| ..+.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999999999999987 8999999999999999999999999853 544 344555
Q ss_pred EccCC---------------------------------------------------------------------------
Q 016219 205 LASIG--------------------------------------------------------------------------- 209 (393)
Q Consensus 205 ~~~~~--------------------------------------------------------------------------- 209 (393)
++...
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 54200
Q ss_pred -CCCC------CCC-CCccccc-------------cccccc------------c--ccc---------------------
Q 016219 210 -PATT------PAV-ASTATHQ-------------HQHQHQ------------H--QHQ--------------------- 233 (393)
Q Consensus 210 -~~~~------~~~-~~~~~~~-------------~~~~~~------------~--~~~--------------------- 233 (393)
+... ++. .....+. ...... . +.+
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000 000 0000000 000000 0 000
Q ss_pred ---------------ccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecC
Q 016219 234 ---------------HQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298 (393)
Q Consensus 234 ---------------~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~ 298 (393)
.............+++|||..||.++++.+|.++|-+||.|++.+++.|+.|+.+|.||||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00000111234467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CccCCeEEEEEEcccCC
Q 016219 299 VDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (393)
Q Consensus 299 ~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~ 327 (393)
+.+|..||..|| +.|+-++|+|.+..++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999 89999999999976654
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.8e-23 Score=192.11 Aligned_cols=151 Identities=21% Similarity=0.397 Sum_probs=139.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCCC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGP 210 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~~ 210 (393)
.|||| +++|+..|.++|+++|+|+++++.++. | +-|||||.|.++.+|.+||..+|.. +.|+.+++.|+...+
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 69999 899999999999999999999999998 6 9999999999999999999999965 899999999986443
Q ss_pred CCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCcc
Q 016219 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (393)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg 290 (393)
. .|||.||+.+++...|..+|+.||.|++|++.++. .| ++|
T Consensus 77 ~-------------------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg 117 (369)
T KOG0123|consen 77 S-------------------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKG 117 (369)
T ss_pred c-------------------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-cee
Confidence 3 29999999999999999999999999999999985 45 899
Q ss_pred EEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 291 ~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
| ||+|.+.++|.+|+..+| ..+.|+.|.|.....+..
T Consensus 118 ~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 118 Y-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred e-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9 999999999999999999 788999999988876544
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.7e-22 Score=171.50 Aligned_cols=140 Identities=19% Similarity=0.357 Sum_probs=118.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
...||||||||..++|++-|..||.+.|+|..++|+.+ .+.|.++.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 44689999999999999999999999999999999887 13344443
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~ 287 (393)
.......+ .....--|||+.|...++-++|++.|.+||.|..++|++|..|++
T Consensus 50 ~p~nQsk~---------------------------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K 102 (321)
T KOG0148|consen 50 APGNQSKP---------------------------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK 102 (321)
T ss_pred CcccCCCC---------------------------ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCc
Confidence 22111111 011134699999999999999999999999999999999999999
Q ss_pred CccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 288 ~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
+||||||.|-+.++|+.||..|| ..|.+|.|+-.||..++.
T Consensus 103 sKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 103 SKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPS 144 (321)
T ss_pred ccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcc
Confidence 99999999999999999999999 789999999999987763
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.8e-20 Score=173.65 Aligned_cols=167 Identities=27% Similarity=0.456 Sum_probs=145.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCCC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGP 210 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~~ 210 (393)
.|||.||++.++...|..+|+.||.|++|++.++. .| ++|| ||+|.+.+.|.+|+..+|+. +.++.|.|.......
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999987 55 9999 99999999999999999987 699999998876554
Q ss_pred CCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCcc
Q 016219 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (393)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg 290 (393)
....+... ....-..+||.|++.++++..|..+|..||.|.++.++.+. .|+++|
T Consensus 155 er~~~~~~------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~ 209 (369)
T KOG0123|consen 155 EREAPLGE------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKG 209 (369)
T ss_pred hhcccccc------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCC
Confidence 43322221 12223589999999999999999999999999999999974 677999
Q ss_pred EEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 291 ~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
|+||.|.+++.|..|+..|+ ..+.+..+.|..+..+
T Consensus 210 ~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 210 FGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred ccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 99999999999999999999 7777899999888764
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.7e-19 Score=146.76 Aligned_cols=85 Identities=22% Similarity=0.461 Sum_probs=79.3
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|++||.|..|+|++|+.+++++|||||+|.+.++|..||..|+ ..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3445799999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+..++.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=2.2e-18 Score=168.44 Aligned_cols=79 Identities=20% Similarity=0.371 Sum_probs=74.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
..++|||+|||+.+++++|+.+|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..+|+. +.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999999999999999999999999999999966 899999998865
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.3e-17 Score=134.06 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=136.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||||||.++-+.+|..+|-+||.|..|.+...+ ...+||||+|.++.+|..||.--++. +.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346899999999999999999999999999999875433 45679999999999999999988876 89999999998
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC
Q 016219 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (393)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g 286 (393)
................ ...........-+.......+|.|.+||.+-++++|+.+....|.|....+.+|
T Consensus 81 rggr~s~~~~G~y~gg------grgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGG------GRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---- 150 (241)
T ss_pred cCCCcccccccccCCC------CCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----
Confidence 7654322211110000 000011111111223344568999999999999999999999999999998875
Q ss_pred CCccEEEEEecCHHHHHHHHHcCC-C--ccCCeEEEEEEcc
Q 016219 287 KPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHILNCQRAI 324 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~~~-~--~~~G~~l~V~~a~ 324 (393)
|++.|+|...++..-|+..|. . .-.|-+..+....
T Consensus 151 ---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 151 ---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred ---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 589999999999999999998 2 3356665555543
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.77 E-value=1.7e-17 Score=138.85 Aligned_cols=185 Identities=19% Similarity=0.240 Sum_probs=139.4
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 131 RKIFVHGLGWDTKAETLID----AFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~----~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
.||||.||+-.+..++|+. +|++||.|..|...+ +.+.+|-|||.|.+.+.|..|+..+++. +.|+.+++++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999988 999999999987764 5689999999999999999999999987 7999999999
Q ss_pred ccCCCCCCCCCCCccccc----------------ccccc-c--ccccccccccCCccccccceeeecCCCCCCcHHHHHH
Q 016219 206 ASIGPATTPAVASTATHQ----------------HQHQH-Q--HQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLA 266 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~----------------~~~~~-~--~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~ 266 (393)
+.............-... ..... . ......... ......+...||+.|||..++.+.|..
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHHHHH
Confidence 875433221111000000 00000 0 000000000 123356678999999999999999999
Q ss_pred HHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC-CeEEEEEEcc
Q 016219 267 FFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAI 324 (393)
Q Consensus 267 ~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~-G~~l~V~~a~ 324 (393)
+|.+|..-..|+++... ++.|||+|.+...|..|...+. ..|- ...+.|.++.
T Consensus 166 lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999998654 7899999999999999999988 4444 7778887763
No 36
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=4.2e-17 Score=150.04 Aligned_cols=171 Identities=18% Similarity=0.313 Sum_probs=137.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
.....|-+++||+++|+++|..||+-+ .|.++.+.+ .+|+..|-|||+|.+.+++.+||+.....+..|.|.|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 445678899999999999999999988 577765554 37999999999999999999999999888999999998876
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeE-EeeeecCCCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKATG 286 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~-v~i~~d~~~g 286 (393)
.......... ..+........|-+++||+.||+++|.+||+..-.|.. |.++.+ ..+
T Consensus 85 ~~e~d~~~~~---------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rg 142 (510)
T KOG4211|consen 85 GAEADWVMRP---------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRG 142 (510)
T ss_pred CccccccccC---------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCC
Confidence 5444221111 11111134458899999999999999999998755555 444555 578
Q ss_pred CCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 287 KPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
++.|-|||+|.+.+.|++||......|..|-|.|-.+
T Consensus 143 R~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 143 RPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 8999999999999999999999888899998888554
No 37
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=138.88 Aligned_cols=82 Identities=33% Similarity=0.567 Sum_probs=77.7
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEcccC
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDG 326 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~~ 326 (393)
-++||||+|+|.++.+.|+++|++||.|+.+.|+.|+.+|+|||||||+|.+.++|.+|++..|..|+||+..|.+|.-.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CC
Q 016219 327 PK 328 (393)
Q Consensus 327 ~~ 328 (393)
.+
T Consensus 92 ~~ 93 (247)
T KOG0149|consen 92 GK 93 (247)
T ss_pred Cc
Confidence 33
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=1.6e-17 Score=154.86 Aligned_cols=188 Identities=20% Similarity=0.330 Sum_probs=136.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~ 209 (393)
+.||||||.+++++++|+.+|..||.|..|.++++..||+++||+||+|.+.++|.+|+..+|+. |-||.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999999999999999999999999999999975 79999998765432
Q ss_pred CCCCCCCCCc--------------ccc-cc-------ccc---------------cc---cccc-------ccccccCCc
Q 016219 210 PATTPAVAST--------------ATH-QH-------QHQ---------------HQ---HQHQ-------HQHQQHHQQ 242 (393)
Q Consensus 210 ~~~~~~~~~~--------------~~~-~~-------~~~---------------~~---~~~~-------~~~~~~~~~ 242 (393)
.......... ... .. ... .+ .... .......+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 2221110000 000 00 000 00 0000 000000111
Q ss_pred cccccceeeecCCCC--CCc--------HHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-C
Q 016219 243 SEYTQRKIFVSNVGS--ELE--------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~--~~t--------~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~ 311 (393)
-..++.++.+.|+=. +.| .++|.+-+.+||.|..|.|-+. +-|+.||.|.+.+.|..|+.+|| .
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 225567888888832 222 2688889999999988877432 34999999999999999999999 8
Q ss_pred ccCCeEEEEEEc
Q 016219 312 NFEGHILNCQRA 323 (393)
Q Consensus 312 ~~~G~~l~V~~a 323 (393)
.|.|+.|.+.|-
T Consensus 514 WF~gr~Ita~~~ 525 (549)
T KOG0147|consen 514 WFAGRMITAKYL 525 (549)
T ss_pred hhccceeEEEEe
Confidence 999999999885
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.9e-16 Score=128.91 Aligned_cols=84 Identities=31% Similarity=0.648 Sum_probs=77.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+++|.+||.|.+|+|+.++.+++++|||||+|.+.++|.+||..+++ .|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3467899999999999999999999999999999999999999999999999999999999998875 489999999998
Q ss_pred cCCCC
Q 016219 207 SIGPA 211 (393)
Q Consensus 207 ~~~~~ 211 (393)
...+.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 65443
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=1.5e-15 Score=137.45 Aligned_cols=197 Identities=19% Similarity=0.298 Sum_probs=143.7
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 124 ~~~~~~~~~vfV~nLp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
.......|.|||.|||+++...+|+.+|. +.|.|+.|.++.|. .|++||||.|+|++++.+++|++.+|.. +.||.|
T Consensus 38 gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 38 GNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred CCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 34445567899999999999999999996 68999999999997 8999999999999999999999999954 899999
Q ss_pred EEEEccCCCCCCCCC-------------------------CCc------ccccccccccccc------------------
Q 016219 202 ACQLASIGPATTPAV-------------------------AST------ATHQHQHQHQHQH------------------ 232 (393)
Q Consensus 202 ~v~~~~~~~~~~~~~-------------------------~~~------~~~~~~~~~~~~~------------------ 232 (393)
.|+.-.......... ... ...........+.
T Consensus 117 ~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~l 196 (608)
T KOG4212|consen 117 VVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNL 196 (608)
T ss_pred EEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhc
Confidence 987643210000000 000 0000000000000
Q ss_pred -cccccccC---CccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHc
Q 016219 233 -QHQHQQHH---QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308 (393)
Q Consensus 233 -~~~~~~~~---~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~ 308 (393)
..+..... ....+-..++||.||.+.+....|.+.|.-.|.|..|.+-.|+ -|.++||+.++|.++-.|..||.+
T Consensus 197 fgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 197 FGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred ccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHh
Confidence 00000000 1123344689999999999999999999999999999999986 579999999999999999999999
Q ss_pred CC-CccCCeEEEEEE
Q 016219 309 PH-KNFEGHILNCQR 322 (393)
Q Consensus 309 ~~-~~~~G~~l~V~~ 322 (393)
++ .-+..++..+..
T Consensus 276 l~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 276 LDRQGLFDRRMTVRL 290 (608)
T ss_pred hccCCCccccceeec
Confidence 99 445556666665
No 41
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=2.2e-15 Score=132.84 Aligned_cols=196 Identities=16% Similarity=0.259 Sum_probs=142.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN 198 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g 198 (393)
..+..|||.|||.++|-+++.++|++||.|. .|+|.++. .|+.+|-|.+.|...+++..|+..|+.. +.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999875 46777776 5999999999999999999999999965 899
Q ss_pred eeeEEEEccCCCCCCCCCCCc----cccccccccccccc--ccccccCCccccccceeeecCCCC----CCc-------H
Q 016219 199 RMTACQLASIGPATTPAVAST----ATHQHQHQHQHQHQ--HQHQQHHQQSEYTQRKIFVSNVGS----ELE-------P 261 (393)
Q Consensus 199 ~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lfV~nLp~----~~t-------~ 261 (393)
+.|+|..|............. .......+...+.. -......+......++|.|+||=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999886332211111100 11111111111110 011113344555678999999832 223 3
Q ss_pred HHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 262 ~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
++|++-+.+||.|..|.|.- ..+.|.+-|.|.+.+.|..||+.|+ +.|.||+|....-..+..
T Consensus 291 edl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 57778899999999998863 3468999999999999999999999 899999999887654433
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=6.6e-16 Score=147.95 Aligned_cols=192 Identities=21% Similarity=0.252 Sum_probs=134.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....+.++|+|||..+..++|..+|..||.|..+-|+ + .|. -++|.|..+.+|.+|+..+... +....+.+.+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 3455789999999999999999999999999988443 2 232 2999999999999999999854 5666666666
Q ss_pred ccCCCCCCCCCCC---cccccc----cccccccccccccc----------cCC-ccccccceeeecCCCCCCcHHHHHHH
Q 016219 206 ASIGPATTPAVAS---TATHQH----QHQHQHQHQHQHQQ----------HHQ-QSEYTQRKIFVSNVGSELEPQKLLAF 267 (393)
Q Consensus 206 ~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~----------~~~-~~~~~~~~lfV~nLp~~~t~~~L~~~ 267 (393)
+........+... ...... ..........+... ... ......++|||.||++++|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 5433222110000 000000 00000000000000 000 11112234999999999999999999
Q ss_pred HhcCCCeeEEeeeecCCC---CCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 268 FSKYGEIEEGPLGIDKAT---GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 268 F~~~G~I~~v~i~~d~~~---g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
|.+.|.|.++.|...+.. -.|.|||||+|.+.++|..|++.|+ ..|+|+.|.|.++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999999999998765422 2356999999999999999999999 89999999999987
No 43
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.9e-16 Score=130.89 Aligned_cols=85 Identities=45% Similarity=0.801 Sum_probs=79.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
+...++||||+|++.+..+.|+.+|++||.|++..|+.|+.+|+||||+||+|++.++|.+|++..+-.|.||...|+++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 016219 207 SIGPA 211 (393)
Q Consensus 207 ~~~~~ 211 (393)
..+..
T Consensus 89 ~lg~~ 93 (247)
T KOG0149|consen 89 SLGGK 93 (247)
T ss_pred hhcCc
Confidence 86433
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=8.2e-16 Score=143.01 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=78.5
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+++|+++|+++|+.||.|+.|+|++|+.+++++|||||+|.+.++|.+||..|+ ..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456899999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EcccC
Q 016219 322 RAIDG 326 (393)
Q Consensus 322 ~a~~~ 326 (393)
|+.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98653
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1e-15 Score=109.32 Aligned_cols=69 Identities=30% Similarity=0.609 Sum_probs=65.9
Q ss_pred eeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 250 lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
|||+|||..+|+++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|+..++ ..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 688999999999999999999999998 899999885
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=9.7e-16 Score=115.93 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=75.8
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
..+++|||+||.+.+++++|.++|+++|+|..|.|-.|+.+..+-|||||+|.+.++|..|++.++ ..++.+.|+|.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 356799999999999999999999999999999999999999999999999999999999999999 8899999999996
Q ss_pred c
Q 016219 324 I 324 (393)
Q Consensus 324 ~ 324 (393)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 47
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.62 E-value=1e-14 Score=120.99 Aligned_cols=181 Identities=17% Similarity=0.212 Sum_probs=122.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHcCCCcc----CCee
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD-KVSGKSKGYGFILFKTRSGARKALKEPQKKI----GNRM 200 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~----~g~~ 200 (393)
....-|||||.+||.++...+|..+|..|---+.+.|... +.....+.+|||.|.+...|..|+..+|+.. .+..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3344689999999999999999999999866666655332 2222356899999999999999999999863 6788
Q ss_pred eEEEEccCCCCCCCCCCCcccccc---------cccc-------------------ccccc-------------------
Q 016219 201 TACQLASIGPATTPAVASTATHQH---------QHQH-------------------QHQHQ------------------- 233 (393)
Q Consensus 201 i~v~~~~~~~~~~~~~~~~~~~~~---------~~~~-------------------~~~~~------------------- 233 (393)
+++.++..++..........+... ..+. .....
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 899888755544332222111000 0000 00000
Q ss_pred -------ccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHH
Q 016219 234 -------HQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (393)
Q Consensus 234 -------~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al 306 (393)
.............+.+|||-||..++|+++|+.+|+.|-....++|- ..| ....|||+|...+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~---~~~-g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR---ARG-GMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe---cCC-CcceEeecHHHHHHHHHHH
Confidence 00000000122345799999999999999999999999776666652 111 2457999999999999999
Q ss_pred HcCC
Q 016219 307 EEPH 310 (393)
Q Consensus 307 ~~~~ 310 (393)
..|.
T Consensus 266 ~~lq 269 (284)
T KOG1457|consen 266 NHLQ 269 (284)
T ss_pred HHhh
Confidence 8866
No 48
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.4e-15 Score=126.57 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=77.2
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
...+|-|.||+.++++.+|+++|.+||.|..|.|.+|+.||.+||||||+|.+.++|.+||..|| +-++.--|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 55789999999999999999999999999999999999999999999999999999999999999 78888999999997
Q ss_pred cC
Q 016219 325 DG 326 (393)
Q Consensus 325 ~~ 326 (393)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 65
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=132.02 Aligned_cols=169 Identities=22% Similarity=0.344 Sum_probs=125.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|..+|.+||.|..++|..++.+++++|||||.|.+.++|..|+..++ ..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999 458999999999753
Q ss_pred --CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC
Q 016219 209 --GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (393)
Q Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g 286 (393)
......... ......................+++++++..++...+..+|..+|.+..+.+.......
T Consensus 195 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (306)
T COG0724 195 ASQPRSELSNN----------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGK 264 (306)
T ss_pred ccccccccccc----------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCc
Confidence 111111000 00000000012223344556789999999999999999999999999877776554444
Q ss_pred CCccEEEEEecCHHHHHHHHHc
Q 016219 287 KPKGFCLFVYKTVDAAKKALEE 308 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~ 308 (393)
....+.++.+.....+..++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 265 IPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccccccchhHHHhhhhhhcc
Confidence 4455555555555555544443
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=6e-15 Score=105.37 Aligned_cols=69 Identities=30% Similarity=0.583 Sum_probs=64.1
Q ss_pred eeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 250 lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
|||+|||+.+++++|+++|+.||.|..+++..++. |.++|+|||+|.+.++|.+|+..++ ..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 9999999999999999999999999 899999874
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.4e-14 Score=103.40 Aligned_cols=69 Identities=42% Similarity=0.620 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 133 vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
|||+|||..+++++|+.+|++||.|..+.++.+ .++.+++||||+|.+.++|.+|+..+++. +.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 58899999999999999999999988765 7888774
No 52
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=8.9e-15 Score=123.93 Aligned_cols=165 Identities=19% Similarity=0.326 Sum_probs=126.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~ 209 (393)
..||||+||+.+.+.+|..||..||.|..|.|. .||+||+|.+..+|..|+..+++. |.|-.+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999998764 358999999999999999999977 56666666665432
Q ss_pred CCCCCCCCCccccccccccccccccc-ccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 210 PATTPAVASTATHQHQHQHQHQHQHQ-HQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
.-...... .. ... ..............|+|.||+..+.+++|...|..+|.+....+ .
T Consensus 74 ~~~~g~~~--~g-----------~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~ 132 (216)
T KOG0106|consen 74 RRGRGRPR--GG-----------DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------R 132 (216)
T ss_pred ccccCCCC--CC-----------CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------h
Confidence 11110000 00 000 01111122445578999999999999999999999999965544 2
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.+++||+|.+.++|..|+..++ ..+.|+.|.+.+..
T Consensus 133 ~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 133 RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 7899999999999999999999 89999999995543
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=1.9e-14 Score=125.22 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=69.4
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++. ++|||||+|.+.++|..||. |+ ..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46999999999999999999999999999999998753 57999999999999999996 55 899999999999864
Q ss_pred C
Q 016219 326 G 326 (393)
Q Consensus 326 ~ 326 (393)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 54
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=4.3e-16 Score=125.11 Aligned_cols=84 Identities=29% Similarity=0.460 Sum_probs=77.7
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
...-|||||||+..|+-+|..+|++||.|+.|.+++|+.||+|+||||+.|.+..+...|+..|| ..|.||+|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34579999999999999999999999999999999999999999999999999999999999999 89999999998766
Q ss_pred cCCCC
Q 016219 325 DGPKP 329 (393)
Q Consensus 325 ~~~~~ 329 (393)
....+
T Consensus 114 ~Yk~p 118 (219)
T KOG0126|consen 114 NYKKP 118 (219)
T ss_pred cccCC
Confidence 54443
No 55
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4.1e-14 Score=133.92 Aligned_cols=188 Identities=18% Similarity=0.256 Sum_probs=143.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
....+||++||...++.+++++...||++...+++.+..+|.++||||.+|.++.....|+..+|++ +.++.+.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 3457999999999999999999999999999999999999999999999999999999999999987 777999999988
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCC--CC-c-------HHHHHHHHhcCCCeeEE
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGS--EL-E-------PQKLLAFFSKYGEIEEG 277 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~--~~-t-------~~~L~~~F~~~G~I~~v 277 (393)
.+............. .-........+....++..|.+.|+=. +. . -++|+.-|++||.|..|
T Consensus 368 ~g~~~~~~~~~~~~~--------~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v 439 (500)
T KOG0120|consen 368 VGASNANVNFNISQS--------QVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSV 439 (500)
T ss_pred ccchhccccCCcccc--------ccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEE
Confidence 665554443320000 000001111123344445566666511 11 1 14667788899999999
Q ss_pred eeeec-C--CCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 278 PLGID-K--ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 278 ~i~~d-~--~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.|+++ . ...-+.|..||+|.+.++|++|++.|+ .+|.||+|...|-.
T Consensus 440 ~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 440 EIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred ecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 99987 2 234457889999999999999999999 89999999998853
No 56
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=7.5e-15 Score=111.15 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=74.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
.++|||||||++.+++++|.++|+++|+|..|.|-.|+.+..+.|||||+|.+.++|..|+.-+++. +..++|++.+-.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999865 899999998864
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=127.08 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=76.5
Q ss_pred ccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 242 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
......++|+|.|||+..-+-||+.+|.+||.|.+|.|+.+ +. -|||||||+|.+.++|.+|...|| ..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34456689999999999999999999999999999999986 33 469999999999999999999999 8999999999
Q ss_pred EEcccCCC
Q 016219 321 QRAIDGPK 328 (393)
Q Consensus 321 ~~a~~~~~ 328 (393)
+.|..+-.
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99987643
No 58
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=1.3e-14 Score=119.10 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=79.6
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
......+|.|-||.+-++.++|+.+|++||.|-.|.|++|+-|+.++|||||.|....+|+.|+.+|+ ..|+|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 44456799999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
+|.=...
T Consensus 89 ~arygr~ 95 (256)
T KOG4207|consen 89 MARYGRP 95 (256)
T ss_pred hhhcCCC
Confidence 9865443
No 59
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=4.2e-14 Score=122.41 Aligned_cols=84 Identities=25% Similarity=0.364 Sum_probs=78.5
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.+-+||||+-|++++++..|+..|+.||+|+.|+|++|+.||+++|||||+|...-+...|.+..+ ..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8999999999997
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.....
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 65443
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.6e-13 Score=121.79 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=73.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
...+|||..+.++.++++|+..|..||+|..|.+-+++..+.++||+||+|.+..+-..|+..+|- .++|..++|..+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 456899999999999999999999999999999999998889999999999999999999999994 4899999987653
No 61
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.1e-15 Score=121.23 Aligned_cols=85 Identities=19% Similarity=0.367 Sum_probs=79.9
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||++|...+|+.-|...|-+||.|..|.|+.|..+++.||||||+|...++|..||..|| ..|.||+|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 345799999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred ccCCCC
Q 016219 324 IDGPKP 329 (393)
Q Consensus 324 ~~~~~~ 329 (393)
.+..-.
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 876443
No 62
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.51 E-value=8.5e-13 Score=118.91 Aligned_cols=187 Identities=16% Similarity=0.193 Sum_probs=137.1
Q ss_pred cCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 130 HRKIFVHGLG-WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 130 ~~~vfV~nLp-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
...|.|.||. ..+|.+.|..+|+-||.|..|+|+..+. --|+|+|.+...|.-|+..+.+ ++.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5678888886 5679999999999999999999998863 3599999999999999999985 5899999999886
Q ss_pred CCCCCCCCCCCccccccccccc---ccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQ---HQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~ 284 (393)
-.....+...-.......-... ++-..+....-....+++.+|++.|||.++++++|+.+|...|-.......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf---- 447 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---- 447 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----
Confidence 5444333221111111000000 111111111222234566899999999999999999999998877655433
Q ss_pred CCCCccEEEEEecCHHHHHHHHHcCC-CccCC-eEEEEEEccc
Q 016219 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-HILNCQRAID 325 (393)
Q Consensus 285 ~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G-~~l~V~~a~~ 325 (393)
-++.+-+|++.+.+.+.|..|+..++ +.+.+ ..|+|+|.++
T Consensus 448 f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 448 FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 23447799999999999999999998 76765 5899999753
No 63
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=1.1e-14 Score=129.73 Aligned_cols=192 Identities=16% Similarity=0.225 Sum_probs=130.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQY----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
--|-+++||+++++.++.+||..- |-...|-.++.+ .|+..|-|||.|..+++|+.||..+...++.|.|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 357788999999999999999732 233455455544 899999999999999999999999988888888776554
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCC-eeE--EeeeecC
Q 016219 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE-IEE--GPLGIDK 283 (393)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~-I~~--v~i~~d~ 283 (393)
........-......+.-. ..............-.......+|-+++||+..+.++|..||..|.. |.. |.++.+
T Consensus 241 TaaEvqqvlnr~~s~pLi~-~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIP-GLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred hHHHHHHHHHhhccccccC-CCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 3111100000000000000 00000000001111112233568999999999999999999998864 333 677765
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
..|++.|-|||+|.+.+.|..|....+ +.+..|-|.|-.+..
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 579999999999999999999999999 556689888876643
No 64
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=4.6e-14 Score=129.75 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=71.2
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCH--HHHHHHHHcCC-CccCCeEEEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV--DAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~--~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
..+.+||||||++.+|+++|+.+|+.||.|..|.|++ .+| ||||||+|.+. .++.+||..|| ..+.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457999999999999999999999999999999994 567 99999999987 78999999999 89999999999
Q ss_pred EcccC
Q 016219 322 RAIDG 326 (393)
Q Consensus 322 ~a~~~ 326 (393)
.|.+.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 98654
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=8.1e-14 Score=117.48 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=75.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
+..+|-|.|||.++++.+|.+||.+||.|..|.|.+++.||.+||||||.|.+.++|.+||..|++. +.+-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5678999999999999999999999999999999999999999999999999999999999999987 788889999875
Q ss_pred C
Q 016219 208 I 208 (393)
Q Consensus 208 ~ 208 (393)
.
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 4
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=100.59 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=71.4
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....+.|||+|||+.+|.+++.++|.+||.|..|+|-..+ .-+|.|||.|.+..+|.+|+..|+ ..+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3455789999999999999999999999999999996544 449999999999999999999999 899999999988
Q ss_pred cccC
Q 016219 323 AIDG 326 (393)
Q Consensus 323 a~~~ 326 (393)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6543
No 67
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.50 E-value=1.9e-12 Score=119.75 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=131.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIED-CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
..-.|-+++||+.||+++|.+||+-.-.|.. |.++.++ .+++.|-|||+|++.+.|++||..+...|..|.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 4568999999999999999999997755444 3345554 7889999999999999999999999999999999998765
Q ss_pred CCCCCCC-----------CC-CC-ccccc--------c--------------------------------------cccc
Q 016219 208 IGPATTP-----------AV-AS-TATHQ--------H--------------------------------------QHQH 228 (393)
Q Consensus 208 ~~~~~~~-----------~~-~~-~~~~~--------~--------------------------------------~~~~ 228 (393)
....... .. .. .+... . ....
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 1100000 00 00 00000 0 0000
Q ss_pred cc-cccccccc-cCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHH
Q 016219 229 QH-QHQHQHQQ-HHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (393)
Q Consensus 229 ~~-~~~~~~~~-~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al 306 (393)
.. ..+..... ........+..++.++||+..+..+|..+|+..-.+ .|.|-.. .+|+..|-|+|+|.|+++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 00 00000000 000111223789999999999999999999987655 5665543 57999999999999999999999
Q ss_pred HcCCCccCCeEEEEEE
Q 016219 307 EEPHKNFEGHILNCQR 322 (393)
Q Consensus 307 ~~~~~~~~G~~l~V~~ 322 (393)
..-+..+..+-|.+..
T Consensus 339 skd~anm~hrYVElFl 354 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFL 354 (510)
T ss_pred ccCCcccCcceeeecc
Confidence 9988777777666544
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=7.9e-14 Score=106.55 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=81.9
Q ss_pred ccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 242 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
+....+-.|||.++...+|+++|...|..||.|+.|.+-.|+-||..||||+|+|.+...|++|+..+| ..|.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 344556789999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEcccCCCC
Q 016219 321 QRAIDGPKP 329 (393)
Q Consensus 321 ~~a~~~~~~ 329 (393)
.|++.+.+.
T Consensus 147 Dw~Fv~gp~ 155 (170)
T KOG0130|consen 147 DWCFVKGPE 155 (170)
T ss_pred EEEEecCCc
Confidence 999987654
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.8e-15 Score=119.13 Aligned_cols=84 Identities=26% Similarity=0.396 Sum_probs=76.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
.++.-|||||||+..|+.+|..+|++||.|++|.+++|+.||+|+||||+.|.+..+-..|+..+|+. |.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999965 89999999877
Q ss_pred cCCCC
Q 016219 207 SIGPA 211 (393)
Q Consensus 207 ~~~~~ 211 (393)
.....
T Consensus 113 ~~Yk~ 117 (219)
T KOG0126|consen 113 SNYKK 117 (219)
T ss_pred ccccC
Confidence 54433
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=8.1e-14 Score=99.46 Aligned_cols=69 Identities=28% Similarity=0.539 Sum_probs=62.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeE
Q 016219 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (393)
Q Consensus 133 vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~ 202 (393)
|||+|||+.+++++|+.+|+.||.|..++++.++. +.++|+|||+|.+.++|.+|+..++ ..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 9999999999999999999999999 458998874
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=120.08 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=69.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+++|+.||.|.+|+|+++.. ++|||||+|.+.++|..||.+.+..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998863 57899999999999999997555679999999999753
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2e-13 Score=109.33 Aligned_cols=78 Identities=23% Similarity=0.396 Sum_probs=72.6
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
.++|||+||+..+++.+|..+|..||.|..|.|.+.+ -|||||+|.++.+|..|+..|+ ..|.|..|+|.+...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5799999999999999999999999999999998754 8999999999999999999999 899999999999887
Q ss_pred CCCC
Q 016219 326 GPKP 329 (393)
Q Consensus 326 ~~~~ 329 (393)
.+..
T Consensus 85 ~~r~ 88 (195)
T KOG0107|consen 85 RPRG 88 (195)
T ss_pred Cccc
Confidence 6654
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=1.4e-12 Score=118.47 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=67.3
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
..++|||+|||+++|++.|+.-|..||+|.++.|+ ..|+++| .|.|.++++|++|+..|+ ..+.||.|.|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 34689999999999999999999999999999995 4688887 899999999999999999 8999999999873
No 74
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=2.1e-13 Score=133.53 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=98.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQY--GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
..++|||+|||..+++++|+++|++| |.|..|+++ ++||||+|.+.++|.+|+..+|+. |.|+.|.|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999999865 359999999999999999988865 8999999999
Q ss_pred ccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeE
Q 016219 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~ 276 (393)
+............... .......................++|++||++.++...|+.+|..+|.|..
T Consensus 304 Akp~~~~~~~~~~rg~----gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 304 AKPVDKKSYVRYTRGT----GGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred ccCCCccccccccccc----CCCcccccccccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 8643322110000000 000000000111122233445689999999999999999999999998653
No 75
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=6.7e-13 Score=123.50 Aligned_cols=172 Identities=20% Similarity=0.306 Sum_probs=122.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcce---EEEEEecCHHHHHHHHHcCCCccCC
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV---SGKSKG---YGFILFKTRSGARKALKEPQKKIGN 198 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g---~afv~f~~~~~a~~a~~~~~~~~~g 198 (393)
.....+++||||+||++++++.|...|..||.+ .|....... .-.++| |+|+.|.++.++...|..+...-.+
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 445678899999999999999999999999998 455542111 113566 9999999999999888776542222
Q ss_pred eeeEEEEccCCCC--CCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHh-cCCCee
Q 016219 199 RMTACQLASIGPA--TTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFS-KYGEIE 275 (393)
Q Consensus 199 ~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~-~~G~I~ 275 (393)
-.+.|.....+.. ...+...... .--........+.+|||||+||..++.++|..+|. -||.|.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs-------------~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ 399 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADS-------------DFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVL 399 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccc-------------hhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceE
Confidence 2222221111111 0000000000 00001223455678999999999999999999998 799999
Q ss_pred EEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 276 EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 276 ~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
.+-|-+|+.-+.++|-|-|+|.+..+-.+||.+--
T Consensus 400 yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarF 434 (520)
T KOG0129|consen 400 YVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARF 434 (520)
T ss_pred EEEeccCcccCCCCCcceeeecccHHHHHHHhhhe
Confidence 99999999999999999999999999999998744
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=119.37 Aligned_cols=82 Identities=33% Similarity=0.530 Sum_probs=75.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~ 206 (393)
..-+||||+-|++++++..|+..|..||+|..|+|++++.||+++|||||+|.+..+...|.+...+ +|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4468999999999999999999999999999999999999999999999999999999999998775 489999999886
Q ss_pred cCC
Q 016219 207 SIG 209 (393)
Q Consensus 207 ~~~ 209 (393)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 533
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=3.3e-13 Score=96.25 Aligned_cols=71 Identities=31% Similarity=0.577 Sum_probs=66.4
Q ss_pred eeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 249 ~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
+|||+|||..++.++|+++|..||.|..+++.+++ +.++|+|||+|.+...|..|+..++ ..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7889999999999999999999999 88999998873
No 78
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3.5e-13 Score=122.75 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=77.2
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc-CCeEEEEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-EGHILNCQR 322 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~-~G~~l~V~~ 322 (393)
..++-||||.||.++.+++|.-+|++.|.|-.+||+.|+.+|.+||||||+|.+.+.|+.|++.|| +.| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999 655 689999988
Q ss_pred cccCC
Q 016219 323 AIDGP 327 (393)
Q Consensus 323 a~~~~ 327 (393)
+..+.
T Consensus 161 Svan~ 165 (506)
T KOG0117|consen 161 SVANC 165 (506)
T ss_pred eeecc
Confidence 76653
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.7e-13 Score=114.56 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=68.9
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
.+.+|||+||++.+|+++|+++|+.||.|..|+|++| +..+|||||+|.++.+|..|+...+..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 4579999999999999999999999999999999987 4556899999999999999996555899999999987643
No 80
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.5e-13 Score=94.75 Aligned_cols=70 Identities=37% Similarity=0.608 Sum_probs=65.9
Q ss_pred ecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 252 V~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
|+|||..+++++|+.+|+.||.|..+.|..++.++.++|+|||+|.+.++|..|+..++ ..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999 88999998873
No 81
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.43 E-value=1.9e-13 Score=110.19 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=75.9
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
...+|||+||+..++++-|+++|-+.|+|+.++|++|+-+...+|||||+|.+.++|.-|++.|| -.|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34699999999999999999999999999999999999999999999999999999999999999 78999999999987
No 82
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=5.4e-13 Score=125.84 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=78.7
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
+.|||||||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|..|++.|| ..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999 8999999999999776
Q ss_pred CCC
Q 016219 327 PKP 329 (393)
Q Consensus 327 ~~~ 329 (393)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 554
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=112.32 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=69.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
+.+.+|||+||++.+|+++|+++|+.||.|.+|+|+++. ..++||||+|.++.+|..|+.+.+..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 346899999999999999999999999999999999884 45689999999999999999877788999999888764
No 84
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.41 E-value=3.3e-13 Score=121.76 Aligned_cols=177 Identities=21% Similarity=0.216 Sum_probs=142.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
...++|+|++...+.+.++..++..+|.+..+.+........++|++++.|+..+.+..||..... .+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 457899999999999999999999999988888887777889999999999999999999998875 3455555544443
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCcccccccee-eecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKI-FVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-fV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g 286 (393)
....... ............++ +|+||++.++.++|+.+|..+|.|..++++.++.++
T Consensus 167 ~~~~~~~----------------------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~ 224 (285)
T KOG4210|consen 167 RRGLRPK----------------------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG 224 (285)
T ss_pred ccccccc----------------------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc
Confidence 2221000 00111122223345 499999999999999999999999999999999999
Q ss_pred CCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 287 ~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
.++|||||.|.+...+..++.. + ..+.|++++|.+..+.+.
T Consensus 225 ~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 225 DSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred chhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 9999999999999999999998 6 889999999998765543
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.40 E-value=4.9e-13 Score=109.85 Aligned_cols=83 Identities=24% Similarity=0.442 Sum_probs=77.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
-.+|.|-||-+-++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|....+|+.|++.|.+. |.|+.|+|+++..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 358999999999999999999999999999999999999999999999999999999999999976 7999999999876
Q ss_pred CCCC
Q 016219 209 GPAT 212 (393)
Q Consensus 209 ~~~~ 212 (393)
+...
T Consensus 93 gr~~ 96 (256)
T KOG4207|consen 93 GRPS 96 (256)
T ss_pred CCCc
Confidence 6553
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.6e-12 Score=123.28 Aligned_cols=188 Identities=19% Similarity=0.250 Sum_probs=143.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhc-----------CC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQY-----------GE-IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~-----------G~-i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 193 (393)
.....+.+||+++|+.+++..+..+|..- |+ +..+.+- ..+.|||++|.+...|..|+....
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhcccc
Confidence 33456789999999999999999998643 22 4455443 345699999999999999998887
Q ss_pred CccCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCC
Q 016219 194 KKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE 273 (393)
Q Consensus 194 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~ 273 (393)
..+.|+.+.+.................. ..........+........+||++||..+++.+++++...||.
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~---------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~ 315 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQ---------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP 315 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhcc---------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc
Confidence 7788888877554322222111110000 0111112223334556679999999999999999999999999
Q ss_pred eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 274 IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 274 I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
+...+++.|..+|.++||||.+|.++.....|+..|| ..+.++.|.|..|.....
T Consensus 316 lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 316 LKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred chhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 9999999999999999999999999999999999999 889999999999976543
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.3e-12 Score=104.80 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=70.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
.++||||||+..++..+|...|..||+|..|.|-+.+ .|||||+|.++.+|..|+..|++. |+|..|+|.++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5789999999999999999999999999999987754 689999999999999999999976 9999999999875
Q ss_pred CCC
Q 016219 209 GPA 211 (393)
Q Consensus 209 ~~~ 211 (393)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 544
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.2e-12 Score=103.26 Aligned_cols=79 Identities=23% Similarity=0.426 Sum_probs=70.2
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||.++-+.+|..+|-+||.|..|.+- ..-.+-.||||+|.++-+|..||..-+ ..++|..|+|.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK---~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELK---NRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEec---cCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45799999999999999999999999999999883 333457899999999999999999999 89999999999986
Q ss_pred cCC
Q 016219 325 DGP 327 (393)
Q Consensus 325 ~~~ 327 (393)
...
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 544
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=3.9e-12 Score=91.15 Aligned_cols=73 Identities=33% Similarity=0.546 Sum_probs=67.1
Q ss_pred eeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 249 ~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
+|+|+|||+.+++++|+++|..||.|..+.+..++.+ .++|+|||+|.+.++|..|+..++ ..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987644 779999999999999999999999 669999999864
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=2.8e-12 Score=93.55 Aligned_cols=76 Identities=22% Similarity=0.424 Sum_probs=68.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
..+-|||+|||+.+|.+++.++|.+||+|..|+|-..+ ..+|.|||.|.+..+|.+|+..|.+. +.++.+.|.+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 35789999999999999999999999999999986655 56899999999999999999999976 899999998764
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=2.2e-12 Score=117.96 Aligned_cols=79 Identities=32% Similarity=0.573 Sum_probs=76.1
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
..+|||+|||+.+|+++|+.+|..||.|..|+|..++.+|.++|||||.|.+.++|..|+..++ ..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5799999999999999999999999999999999998899999999999999999999999999 899999999999753
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.36 E-value=4.5e-11 Score=107.96 Aligned_cols=185 Identities=14% Similarity=0.206 Sum_probs=124.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHcCCCc-c-CC-eeeEEEEcc
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY-GFILFKTRSGARKALKEPQKK-I-GN-RMTACQLAS 207 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~-~-~g-~~i~v~~~~ 207 (393)
.++|+|+-+.++-+-|..+|++||.|..|.-. .+ +.|| |+|+|.+...|..|-..+.+. | .| ..+++.++.
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF-~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITF-TK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEE-ec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 57899999999999999999999999877432 22 2233 899999999999998888755 4 33 455665543
Q ss_pred CCCC-----------CCCCCCCcc---cccc------cc--------cccccccccccccC-Ccccc--ccceeeecCCC
Q 016219 208 IGPA-----------TTPAVASTA---THQH------QH--------QHQHQHQHQHQQHH-QQSEY--TQRKIFVSNVG 256 (393)
Q Consensus 208 ~~~~-----------~~~~~~~~~---~~~~------~~--------~~~~~~~~~~~~~~-~~~~~--~~~~lfV~nLp 256 (393)
-... ..++..+.. +... .. .............. ..... ....|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 1100 000000000 0000 00 00000000000000 00111 14678888886
Q ss_pred C-CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 257 S-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 257 ~-~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
. .+|.+-|..+|+-||.|.+|+|+..+ +--|.|+|.+...|..|+..|+ +.+.|+.|+|.+.+..
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 5 78999999999999999999999875 4579999999999999999999 8999999999997643
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=3e-12 Score=118.02 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=67.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCH--HHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR--SGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~--~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
..+||||||++.+++++|..+|..||.|..|.|++. +| ||||||+|.+. .++.+||..|++. +.||.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 468999999999999999999999999999999944 66 99999999987 7899999999965 89999999987
Q ss_pred c
Q 016219 207 S 207 (393)
Q Consensus 207 ~ 207 (393)
.
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 5
No 94
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2.3e-12 Score=113.13 Aligned_cols=81 Identities=19% Similarity=0.389 Sum_probs=73.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
...-++|+|.|||+.+-+-||+.+|.+||.|.+|.|+.+- .-||||+||+|.+.++|++|-..+|+. +.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3445799999999999999999999999999999999874 348999999999999999999999976 8999999999
Q ss_pred ccCC
Q 016219 206 ASIG 209 (393)
Q Consensus 206 ~~~~ 209 (393)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8755
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=8.4e-12 Score=88.87 Aligned_cols=70 Identities=36% Similarity=0.573 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEE
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v 203 (393)
+|||+|||..++..+|+.+|.+||.|..++++.++ +.++|+|||+|.+...|.+|+..+++ .+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998876 78899999999999999999999884 478888765
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.8e-12 Score=107.44 Aligned_cols=83 Identities=27% Similarity=0.426 Sum_probs=77.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
.-|+||||+|.-.+++.-|...|-+||.|..|.|+.|..++++||||||+|...++|..||..|+. .+.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 348999999999999999999999999999999999999999999999999999999999999995 5999999999987
Q ss_pred CCCC
Q 016219 208 IGPA 211 (393)
Q Consensus 208 ~~~~ 211 (393)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 5443
No 97
>smart00361 RRM_1 RNA recognition motif.
Probab=99.32 E-value=6.5e-12 Score=89.30 Aligned_cols=60 Identities=18% Similarity=0.387 Sum_probs=54.5
Q ss_pred HHHHHHHHh----cCCCeeEEe-eeecCCC--CCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 261 PQKLLAFFS----KYGEIEEGP-LGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 261 ~~~L~~~F~----~~G~I~~v~-i~~d~~~--g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
+++|+++|+ +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|| ..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888898 999999995 7777766 9999999999999999999999999 8999999986
No 98
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.1e-13 Score=132.29 Aligned_cols=151 Identities=21% Similarity=0.183 Sum_probs=132.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccC
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 208 (393)
...++||.||++.+.+.+|...|..+|.|..++|......++.+|+||+.|..+..+.+|+......+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK--------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK--------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh---------
Confidence 34589999999999999999999999999988888777789999999999999999999999887776662
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
..|||+|+|+..|.+.|+.+|+++|.++.++++..+ .|++
T Consensus 737 ---------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkp 776 (881)
T KOG0128|consen 737 ---------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKP 776 (881)
T ss_pred ---------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-cccc
Confidence 279999999999999999999999999999988764 7999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
+|.|||.|.+..+|.+++..+. ..+.-+.+.|....+.+.
T Consensus 777 kg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 777 KGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred ccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 9999999999999999998888 566666677776555333
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=6.6e-12 Score=96.15 Aligned_cols=89 Identities=21% Similarity=0.339 Sum_probs=81.5
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 124 ~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
++.+..+..|||.++...+++++|...|..||+|.+|.+..|+.||-.+|||+|+|.+...|++|+..+|+. +.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 455566778999999999999999999999999999999999999999999999999999999999999955 9999999
Q ss_pred EEEccCCCCC
Q 016219 203 CQLASIGPAT 212 (393)
Q Consensus 203 v~~~~~~~~~ 212 (393)
|.|+......
T Consensus 146 VDw~Fv~gp~ 155 (170)
T KOG0130|consen 146 VDWCFVKGPE 155 (170)
T ss_pred EEEEEecCCc
Confidence 9999866553
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.8e-11 Score=86.78 Aligned_cols=69 Identities=35% Similarity=0.537 Sum_probs=63.5
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEE
Q 016219 135 VHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (393)
Q Consensus 135 V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v 203 (393)
|+|||..++.++|+.+|.+||.|..+.+..++.++.++|||||+|.+.+.|..|+..+++ .+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999999887899999999999999999999999984 478888765
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=9e-12 Score=117.61 Aligned_cols=80 Identities=25% Similarity=0.454 Sum_probs=76.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~ 209 (393)
+.|||||||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|..|++.+|+. +.||.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999965 99999999998644
Q ss_pred C
Q 016219 210 P 210 (393)
Q Consensus 210 ~ 210 (393)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=1.5e-11 Score=83.36 Aligned_cols=55 Identities=33% Similarity=0.606 Sum_probs=49.7
Q ss_pred HHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 264 L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
|+.+|++||.|..+.+.... +++|||+|.+.++|..|+..|| ..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997642 6999999999999999999999 8899999999986
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.25 E-value=4.6e-10 Score=100.38 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=122.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC---CccCCeeeEEEE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTACQL 205 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~~g~~i~v~~ 205 (393)
.+-.|.|++|-..+++.+|.+.++.||+|..+.++..+ .-|.|+|.+.+.|..++...- ..+.|+...+.+
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 45679999999999999999999999999888776543 369999999999999876432 336777766666
Q ss_pred ccCCCCCCCCCCCcccccccccccccccccccccCCccccccceee--ecCCCCCCcHHHHHHHHhcCCCeeEEeeeecC
Q 016219 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF--VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~ 283 (393)
+......++.. ....+.+.|. |-|--+.+|-+-|..++..+|.|.+|.|++.
T Consensus 104 Stsq~i~R~g~-------------------------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk- 157 (494)
T KOG1456|consen 104 STSQCIERPGD-------------------------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK- 157 (494)
T ss_pred chhhhhccCCC-------------------------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-
Confidence 64332221111 1111223343 4455578999999999999999999999863
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCC--CccCC-eEEEEEEcccC
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEG-HILNCQRAIDG 326 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~--~~~~G-~~l~V~~a~~~ 326 (393)
+| --|.|+|.+.+.|++|...|| -.+.| .+|+|.||++.
T Consensus 158 -ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 158 -NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred -cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 33 359999999999999999999 34445 89999999764
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=8.8e-11 Score=83.99 Aligned_cols=72 Identities=35% Similarity=0.568 Sum_probs=65.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
+|+|+|||+.++.++|+.+|..||.|..+.+..++.+ .++|+|||.|.+.+.|..|+..+++. +.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987744 77999999999999999999999976 788888775
No 105
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=2.2e-11 Score=105.37 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=69.1
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
.+|||||||..+++.+|+.+|++||.|..|.|+ |.||||...+...|..||+.|| .+|+|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 379999999999999999999999999999998 5599999999999999999999 8999999999999888
Q ss_pred CCC
Q 016219 327 PKP 329 (393)
Q Consensus 327 ~~~ 329 (393)
.+.
T Consensus 75 sk~ 77 (346)
T KOG0109|consen 75 SKA 77 (346)
T ss_pred CCC
Confidence 544
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.3e-11 Score=107.80 Aligned_cols=86 Identities=14% Similarity=0.242 Sum_probs=80.1
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
.++...|||..|.+-+|.++|.-+|+.||.|.+|.|++|..||.+-.||||+|.+.+++.+|.-+|. ..|+.|+|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3456799999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cccCCCC
Q 016219 323 AIDGPKP 329 (393)
Q Consensus 323 a~~~~~~ 329 (393)
+.+..+.
T Consensus 316 SQSVsk~ 322 (479)
T KOG0415|consen 316 SQSVSKV 322 (479)
T ss_pred hhhhhhh
Confidence 9876663
No 107
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=4.8e-12 Score=105.02 Aligned_cols=135 Identities=18% Similarity=0.283 Sum_probs=114.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...+||||+|+...++++-|.++|-+.|+|..|.|..++ .+..+ ||||.|.++.++.-|+.++|+. +.++.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~-- 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT-- 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc--
Confidence 345899999999999999999999999999999888776 56666 9999999999999999999975 777776654
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecC----CCCCCcHHHHHHHHhcCCCeeEEeeeec
Q 016219 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSN----VGSELEPQKLLAFFSKYGEIEEGPLGID 282 (393)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~n----Lp~~~t~~~L~~~F~~~G~I~~v~i~~d 282 (393)
++.|+ |...++.+.+...|+..|+|..+++.++
T Consensus 83 -------------------------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~ 119 (267)
T KOG4454|consen 83 -------------------------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD 119 (267)
T ss_pred -------------------------------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccc
Confidence 44455 6667899999999999999999999988
Q ss_pred CCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 283 KATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 283 ~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
.. |+.+.++||++...-+.-.++....
T Consensus 120 ~d-~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 120 ND-GRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred cc-CCccCccchhhhhhhcCcHHhhhhc
Confidence 64 8899999999987777666666544
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.5e-11 Score=102.09 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=75.3
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC--CccCC--eEEEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEG--HILNCQ 321 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~--~~~~G--~~l~V~ 321 (393)
..++||||-|...-.+++++.+|.+||.|.+|.+.+.+ .|.+||||||.|.++.+|..||..|| .++-| ..|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 45799999999999999999999999999999999874 79999999999999999999999999 67887 779999
Q ss_pred EcccCCCC
Q 016219 322 RAIDGPKP 329 (393)
Q Consensus 322 ~a~~~~~~ 329 (393)
|+......
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99776544
No 109
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.17 E-value=5e-10 Score=105.26 Aligned_cols=83 Identities=25% Similarity=0.438 Sum_probs=71.3
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEcccC
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDG 326 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~~ 326 (393)
..+|||+|||++++..+|.++|..||.|+..+|..-.-.++..+||||+|.+.+++..||.+.-..|+|++|.|.-....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999999876432344459999999999999999999988899999999887664
Q ss_pred CCC
Q 016219 327 PKP 329 (393)
Q Consensus 327 ~~~ 329 (393)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 433
No 110
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.14 E-value=1e-10 Score=96.71 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=73.5
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcC-CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKY-GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~-G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
....+||+.||.-+.+..|..+|.+| |.|..+++.|++.||.|||||||+|.+.+.|.-|-+.|| +.|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34578999999999999999999998 788889998999999999999999999999999999999 7888999999885
Q ss_pred ccC
Q 016219 324 IDG 326 (393)
Q Consensus 324 ~~~ 326 (393)
-+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 443
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.13 E-value=4.7e-11 Score=108.08 Aligned_cols=84 Identities=21% Similarity=0.468 Sum_probs=79.1
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
..++|||++|+|.++++.|+..|..||.|..|.+++|+.+++++||+||+|.++....++|..-.+.|.|+.|.+..|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 45699999999999999999999999999999999999999999999999999999999998888999999999999988
Q ss_pred CCCC
Q 016219 326 GPKP 329 (393)
Q Consensus 326 ~~~~ 329 (393)
+...
T Consensus 85 r~~~ 88 (311)
T KOG4205|consen 85 REDQ 88 (311)
T ss_pred cccc
Confidence 7644
No 112
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.12 E-value=7.2e-10 Score=93.33 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=74.4
Q ss_pred ceeeecCCCCCCcHHHHHH----HHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 248 RKIFVSNVGSELEPQKLLA----FFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~----~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
.||||.||+..+..++|+. +|++||.|..|... .+.+.+|-|||.|.+.+.|..|+..|+ ..+.|+.++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999998 99999999999886 467889999999999999999999999 899999999999
Q ss_pred cccCCCCCCC
Q 016219 323 AIDGPKPGKS 332 (393)
Q Consensus 323 a~~~~~~~~~ 332 (393)
|..+..-..+
T Consensus 87 A~s~sdii~~ 96 (221)
T KOG4206|consen 87 AKSDSDIIAQ 96 (221)
T ss_pred ccCccchhhc
Confidence 9887665443
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=3.3e-10 Score=80.49 Aligned_cols=60 Identities=20% Similarity=0.389 Sum_probs=52.9
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 144 AETLIDAFK----QYGEIEDCK-AVCDKVS--GKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 144 ~~~l~~~f~----~~G~i~~~~-i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
+++|+++|+ +||.|..|. |+.++.+ +.++|||||.|.+.++|.+|+..|++. +.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888998 999999995 7777666 899999999999999999999999976 78998875
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.08 E-value=2.8e-10 Score=94.13 Aligned_cols=79 Identities=19% Similarity=0.430 Sum_probs=72.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQY-GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...-+||+.+|+.+.+.+|..+|.+| |.|..+++-|++.||.|+|||||+|.+++.|.-|.+.||+. +.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34578999999999999999999998 78888898899999999999999999999999999999988 68888888875
Q ss_pred c
Q 016219 207 S 207 (393)
Q Consensus 207 ~ 207 (393)
.
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 4
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=3.3e-10 Score=110.10 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=73.7
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....+|||||+|+..+++.+|..+|+.||.|.+|.++.. +|||||++....+|.+|+.+|+ ..+.++.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 3446789999999999999999999999999999998754 8999999999999999999999 89999999999
Q ss_pred EcccCCCC
Q 016219 322 RAIDGPKP 329 (393)
Q Consensus 322 ~a~~~~~~ 329 (393)
||..+...
T Consensus 491 Wa~g~G~k 498 (894)
T KOG0132|consen 491 WAVGKGPK 498 (894)
T ss_pred eeccCCcc
Confidence 99876443
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=5.3e-10 Score=99.27 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=71.3
Q ss_pred CCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC--CccCCeE
Q 016219 240 HQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHI 317 (393)
Q Consensus 240 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~--~~~~G~~ 317 (393)
.+.....-++|||++|-..+++.+|+.+|-+||.|.+|+++.. +|+|||+|.+..+|..|....- ..|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3444455689999999999999999999999999999999865 6799999999999999998876 7899999
Q ss_pred EEEEEccc
Q 016219 318 LNCQRAID 325 (393)
Q Consensus 318 l~V~~a~~ 325 (393)
|.|.|+.+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999877
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.06 E-value=2.4e-10 Score=97.27 Aligned_cols=172 Identities=22% Similarity=0.310 Sum_probs=126.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 126 EDPVHRKIFVHGLGWDTKAET-L--IDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~-l--~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
..+.....|++++-..+..+- | ...|+.|-.+...+++++. .+.-++++|+.|.....-.++-..-+++ +.-+.+
T Consensus 92 ~~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~V 170 (290)
T KOG0226|consen 92 PAPAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPV 170 (290)
T ss_pred CCcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcce
Confidence 345566778888877776655 3 6677777777677777765 6677899999998777666665554444 333333
Q ss_pred EEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeee
Q 016219 202 ACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (393)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~ 281 (393)
+..... .+..+. .........+||.+.|.-+++.+-|-..|.+|-.-...++++
T Consensus 171 R~a~gt--swedPs------------------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR 224 (290)
T KOG0226|consen 171 RLAAGT--SWEDPS------------------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR 224 (290)
T ss_pred eecccc--ccCCcc------------------------cccCccccceeecccccccccHHHHHHHHHhccchhhccccc
Confidence 332221 111111 011223345899999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 282 d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
|+-||+++||+||.|.++.++..|+..|+ ..++.|.|.++...
T Consensus 225 dkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 225 DKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 99999999999999999999999999999 78888988876543
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=2e-10 Score=113.45 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=129.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCC-eeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN-RMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g-~~i~v 203 (393)
++....+|||+|||+..+++.+|+..|..+|.|..|.|-+-+ -++...|+||.|.+...+..|+..+.+.+.+ ..+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 444567899999999999999999999999999999986654 4555679999999999999998887765322 22222
Q ss_pred EEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecC
Q 016219 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (393)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~ 283 (393)
.+... .....+.|+|++|+..+....|...|..||.|..|.+-.
T Consensus 446 glG~~----------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-- 489 (975)
T KOG0112|consen 446 GLGQP----------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-- 489 (975)
T ss_pred ccccc----------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--
Confidence 22110 223446899999999999999999999999999887632
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEcccCC
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGP 327 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a~~~~ 327 (393)
..-||||.|.+...|+.|+..|- ..|+| +.|+|.|+....
T Consensus 490 ----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 490 ----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred ----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 25699999999999999999998 77776 789999987643
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.1e-09 Score=74.13 Aligned_cols=55 Identities=25% Similarity=0.500 Sum_probs=47.9
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 147 LIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 147 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
|+.+|++||.|..+.+.... +++|||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999887653 689999999999999999988865 89999999875
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.9e-09 Score=94.68 Aligned_cols=82 Identities=26% Similarity=0.430 Sum_probs=75.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
..+....|||--|.+-+|.++|.-+|+.||.|.+|.|+++..||-+-.||||+|.+.+++.+|.-.|... |..|.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3345568999999999999999999999999999999999999999999999999999999998888765 799999999
Q ss_pred Ecc
Q 016219 205 LAS 207 (393)
Q Consensus 205 ~~~ 207 (393)
++.
T Consensus 315 FSQ 317 (479)
T KOG0415|consen 315 FSQ 317 (479)
T ss_pred hhh
Confidence 875
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=2e-09 Score=101.19 Aligned_cols=87 Identities=21% Similarity=0.385 Sum_probs=77.6
Q ss_pred ccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 242 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
.....+++|||.+|...+-..+|+.+|++||.|+..+|+++.-+---+.|+||++.+..+|.+||..|+ ..|.|+.|.|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 345567899999999999999999999999999999999876555568999999999999999999999 8999999999
Q ss_pred EEcccCCC
Q 016219 321 QRAIDGPK 328 (393)
Q Consensus 321 ~~a~~~~~ 328 (393)
..++..+.
T Consensus 480 EkaKNEp~ 487 (940)
T KOG4661|consen 480 EKAKNEPG 487 (940)
T ss_pred eecccCcc
Confidence 99876543
No 122
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.94 E-value=7.1e-08 Score=86.60 Aligned_cols=195 Identities=11% Similarity=0.101 Sum_probs=133.8
Q ss_pred CCCCCcCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 125 DEDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
.....+..+.|.+|.. .++-+.|..+|=.||.|..|+.|+.+ .|-|.|++.+...+++|+..||+. +.|..|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 3345678899999985 56778999999999999999999876 458999999999999999999865 8999999
Q ss_pred EEEccCCCCCCCCCC--Ccccccccccccccccc---cccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCC-eeE
Q 016219 203 CQLASIGPATTPAVA--STATHQHQHQHQHQHQH---QHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE-IEE 276 (393)
Q Consensus 203 v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~-I~~ 276 (393)
+..+...-....... ............++..+ +.+........+++.|+.-|.|..+|++.|..+|...+. -.+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 988764322221110 00011111111111111 111122234456689999999999999999999976543 456
Q ss_pred EeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC----eEEEEEEcccC
Q 016219 277 GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG----HILNCQRAIDG 326 (393)
Q Consensus 277 v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G----~~l~V~~a~~~ 326 (393)
|+|+.-+ + ....-|.++|.+.++|..||..+| ..|.+ .+..+.|+.+.
T Consensus 437 vkvFp~k-s-erSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfst 489 (494)
T KOG1456|consen 437 VKVFPLK-S-ERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFST 489 (494)
T ss_pred EEeeccc-c-cccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecc
Confidence 7776543 2 224468999999999999999999 56654 44555555443
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=91.85 Aligned_cols=176 Identities=17% Similarity=0.242 Sum_probs=121.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
.+...|-.++||+..++.+|..+|.-.-...-.+.+-....|+..|.+.|.|.+.+.-+.|++.....+.+|.|.|-.+.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 33445678899999999999999975432222222222336778899999999999999999999888999999997765
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCC----CeeEEeeeecC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG----EIEEGPLGIDK 283 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G----~I~~v~i~~d~ 283 (393)
............. ...........-.|-+++||+++++.++..||.+.- ..+.|-+++.
T Consensus 138 ge~f~~iagg~s~----------------e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r- 200 (508)
T KOG1365|consen 138 GEEFLKIAGGTSN----------------EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR- 200 (508)
T ss_pred chhheEecCCccc----------------cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-
Confidence 3322111110000 000001112223678899999999999999997432 3445555543
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEE
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNC 320 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V 320 (393)
..|+..|-|||.|...+.|..||.+....|+-|-|.+
T Consensus 201 pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 201 PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4799999999999999999999988665555555544
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=1.3e-08 Score=96.16 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=114.5
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
..+...++|+|-|||.+++.++|..+|+.||.|..|+. +-..+|.+||+|.+..+|++|++.++.. +.|+.+.+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 34456789999999999999999999999999999764 4456889999999999999999999955 88887773
Q ss_pred EEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecC
Q 016219 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (393)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~ 283 (393)
............. .......................+|+- |++..+.--++..|+-+|.+.. +.
T Consensus 145 ~~~~~~~~~~~~~----------~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~---- 208 (549)
T KOG4660|consen 145 PGGARRAMGLQSG----------TSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE---- 208 (549)
T ss_pred CCcccccchhccc----------chhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc----
Confidence 2221111100000 000001011111111111122334433 9998888777888888888776 42
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
++.-+-.-||.|.+..++..++..++..+.|....+.+..+
T Consensus 209 -~~~~~hq~~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 209 -TPLLNHQRFVEFADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred -ccchhhhhhhhhccccchhhcccCCceecCCCCceEEecCC
Confidence 22223356888888888866666444566666655555443
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.84 E-value=1.1e-08 Score=98.34 Aligned_cols=194 Identities=10% Similarity=-0.014 Sum_probs=135.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
.+.+.+-+.+.+++....+++.||.-. .|-.+.|..+...+...|.++|.|.....+++|+...+..+..|.+.+..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 445667778999999999999998643 3445555555544555789999999999999999998888888888887654
Q ss_pred CCCCCCCCCCCccccccccccccc-------ccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeE-Eee
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQ-------HQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPL 279 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~-v~i 279 (393)
......................+. .........+.....+.+|||..||..++..++..+|+..-.|+. |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 332222111111111000000000 011111122344566789999999999999999999998878877 555
Q ss_pred eecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 280 GIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 280 ~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.+- -+++-++.|||.|..+..+.+|+..-+ +.+..|.|+|.-.
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 544 478889999999999999999998888 6777788999654
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=1.1e-08 Score=96.26 Aligned_cols=84 Identities=27% Similarity=0.499 Sum_probs=75.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~ 205 (393)
...+|+|||.+|+..+-..+|+.+|++||.|+-.+++++..+.-.+.|+||++.+...|.+||..|+. .|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44578999999999999999999999999999999999887777888999999999999999999995 49999999988
Q ss_pred ccCCC
Q 016219 206 ASIGP 210 (393)
Q Consensus 206 ~~~~~ 210 (393)
+...+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 76433
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.83 E-value=8e-09 Score=100.70 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=68.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
.+||||||+|+..+++.+|..+|+.||.|.+|.++. ++|||||.+....+|.+||..|.. .+.++.|++.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 478999999999999999999999999999998763 578999999999999999999884 5899999999987
Q ss_pred CCCC
Q 016219 208 IGPA 211 (393)
Q Consensus 208 ~~~~ 211 (393)
..-.
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 5443
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.81 E-value=4e-09 Score=95.02 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=125.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
..|-|.||.+.+|.++++.||.-.|.|..++|+..... ......|||.|.+...+..|..+.|..+-++.|.|.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 47999999999999999999999999999998764321 234568999999999999999999988899988888765
Q ss_pred CCCCCCCCCCCccc-----c------------ccc-ccccccccccccc------cCCccccccceeeecCCCCCCcHHH
Q 016219 208 IGPATTPAVASTAT-----H------------QHQ-HQHQHQHQHQHQQ------HHQQSEYTQRKIFVSNVGSELEPQK 263 (393)
Q Consensus 208 ~~~~~~~~~~~~~~-----~------------~~~-~~~~~~~~~~~~~------~~~~~~~~~~~lfV~nLp~~~t~~~ 263 (393)
.............. + ... ..+..+......+ .........++|+|++|+..|...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 33332211000000 0 000 0000000000000 0011122347899999999999999
Q ss_pred HHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCcc
Q 016219 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNF 313 (393)
Q Consensus 264 L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~ 313 (393)
+.+.|..+|.|.+.++. .|...-+|-|.|....+...|+..++..+
T Consensus 168 ~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred hhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 99999999999988763 44556778899999999999999988433
No 129
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.76 E-value=2.5e-08 Score=87.17 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=77.1
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....+.+||+|+.+.+|.++|...|+.||.|..+.|+.|+.+|.++||+||+|.+...+..|+. |+ ..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44556799999999999999999999999999999999999999999999999999999999999 77 89999999999
Q ss_pred EcccC
Q 016219 322 RAIDG 326 (393)
Q Consensus 322 ~a~~~ 326 (393)
+...+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98766
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.74 E-value=1.5e-07 Score=78.92 Aligned_cols=88 Identities=19% Similarity=0.335 Sum_probs=70.8
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeee-ecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC---CeEEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG-IDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE---GHILNC 320 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~-~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~---G~~l~V 320 (393)
.-+||||.+||.++..-+|..+|..|-.-+.+.|- .++....++-+|||+|.+...|..|+.+|| ..|+ +.+|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999998666665553 333334456899999999999999999999 4443 799999
Q ss_pred EEcccCCCCCCCC
Q 016219 321 QRAIDGPKPGKSH 333 (393)
Q Consensus 321 ~~a~~~~~~~~~~ 333 (393)
.+|+++.+..+..
T Consensus 113 ElAKSNtK~kr~k 125 (284)
T KOG1457|consen 113 ELAKSNTKRKRRK 125 (284)
T ss_pred eehhcCcccccCC
Confidence 9999887664443
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=1.4e-07 Score=82.23 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=74.2
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
...+|+|.|||+.++..+|+++|..||.+..+-|-.+ ..|.+.|.|-|.|...++|.+|++.++ ..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3478999999999999999999999998888888776 489999999999999999999999999 88999999998876
Q ss_pred cCCCC
Q 016219 325 DGPKP 329 (393)
Q Consensus 325 ~~~~~ 329 (393)
+....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 55443
No 132
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.68 E-value=5.4e-08 Score=86.68 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=71.2
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCee--------EEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeE
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~--------~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~ 317 (393)
.+.|||.|||.++|-+++.++|++||.|. .|+|.++. .|..||-|.+.|--.+++..|+..|+ ..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45799999999999999999999999886 37888875 59999999999999999999999999 8899999
Q ss_pred EEEEEccc
Q 016219 318 LNCQRAID 325 (393)
Q Consensus 318 l~V~~a~~ 325 (393)
|+|..|.-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99998854
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=7.2e-08 Score=85.96 Aligned_cols=77 Identities=29% Similarity=0.435 Sum_probs=67.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc--cCCeeeEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTAC 203 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~--~~g~~i~v 203 (393)
.+..-++||||+|-..+++.+|+.+|-+||.|..|+++.. +++|||+|.+..+|+.|....-.. |.|+.|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3445679999999999999999999999999999998764 459999999999999998876544 69999999
Q ss_pred EEccC
Q 016219 204 QLASI 208 (393)
Q Consensus 204 ~~~~~ 208 (393)
.|...
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 98765
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=1.2e-07 Score=89.36 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=68.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
..+|||+|||++++..+|+++|..||+|...+|......++...||||+|.+..++..||......+.++.+.|....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 346999999999999999999999999999998775544555589999999999999999999778999999997653
No 135
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=2.4e-07 Score=89.77 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=74.8
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecC---CCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK---ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~---~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
.+.+++|||+||++.++++.|...|..||+|.+++|+.-+ ..-+.+-||||-|.+..+|.+|+..|+ ..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3456899999999999999999999999999999998754 245568899999999999999999999 788999999
Q ss_pred EEEcccCCC
Q 016219 320 CQRAIDGPK 328 (393)
Q Consensus 320 V~~a~~~~~ 328 (393)
+.|+...+-
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 999965443
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.51 E-value=5.3e-07 Score=78.70 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=73.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.+....+|+|.|||+.++..+|+++|..||.+..+-|.+++ .|.+.|.|-|.|...++|.+|++.+++. +.|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34445789999999999999999999999999888888877 8999999999999999999999999976 799998887
Q ss_pred EccCC
Q 016219 205 LASIG 209 (393)
Q Consensus 205 ~~~~~ 209 (393)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76533
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.49 E-value=1.8e-06 Score=83.57 Aligned_cols=76 Identities=14% Similarity=0.323 Sum_probs=66.2
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
++.|-+.|+|++++-++|.+||..|-.+-.-.+++....|...|-|.|-|.+.++|.+|...|+ ..|..|+|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3578999999999999999999999766544444445789999999999999999999999999 899999998865
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.2e-07 Score=89.69 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=64.3
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
.-+.++|+|-|||.+++.++|+++|+.||.|..|+.-+ ..+|..||+|-+.-+|.+|++.|+ ..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44567999999999999999999999999999987544 348999999999999999999999 899999888
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.47 E-value=2e-07 Score=79.71 Aligned_cols=82 Identities=32% Similarity=0.544 Sum_probs=73.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
..+....+||+|.|...++++-|...|.+|-.....++++++.||+++||+||.|.+..++..|+..|+++ ++.|.|.+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34445678999999999999999999999998889999999999999999999999999999999999977 67777766
Q ss_pred EEc
Q 016219 204 QLA 206 (393)
Q Consensus 204 ~~~ 206 (393)
..+
T Consensus 265 RkS 267 (290)
T KOG0226|consen 265 RKS 267 (290)
T ss_pred hhh
Confidence 544
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.44 E-value=3.3e-07 Score=80.19 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=76.9
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 124 ~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
.....+.+.|||+|+.+.+|.+++...|+-||.|..+.|+.++.+|+++||+||+|.+.+.+..++....+.+.|+.+.+
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 45667788999999999999999999999999999999999999999999999999999999999994446699999988
Q ss_pred EEccCC
Q 016219 204 QLASIG 209 (393)
Q Consensus 204 ~~~~~~ 209 (393)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 776543
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=5.7e-07 Score=87.22 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=70.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV---SGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
.++..++|||+||++.+++..|...|..||+|..|+|+.-+. ..+.+-|+||-|.+..+|++|++.|++. +.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 356678899999999999999999999999999999986543 2355679999999999999999999976 688888
Q ss_pred EEEEcc
Q 016219 202 ACQLAS 207 (393)
Q Consensus 202 ~v~~~~ 207 (393)
++.|+.
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 888774
No 142
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=3.7e-07 Score=77.89 Aligned_cols=71 Identities=18% Similarity=0.396 Sum_probs=65.0
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||.|.+..+|..|+..++ ..|.|-.+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 379999999999999999999999999999874 6899999999999999999999 8888888999998754
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.39 E-value=8e-08 Score=87.56 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=114.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc--cCCeeeEEEEccCC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTACQLASIG 209 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~--~~g~~i~v~~~~~~ 209 (393)
.+|++||.+..+..+|..+|...---.+-.++ .-.||+||.+.+...|.+|++.++++ +.|..+.+..+...
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 68999999999999999999754111111111 12479999999999999999999976 57877777654322
Q ss_pred CCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeee-ecCCCCCC
Q 016219 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG-IDKATGKP 288 (393)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~-~d~~~g~~ 288 (393)
.. ..+.+-|+|+|...-++.|..+...||.+..|..+ .+..
T Consensus 77 kq----------------------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---- 118 (584)
T KOG2193|consen 77 KQ----------------------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---- 118 (584)
T ss_pred HH----------------------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----
Confidence 11 12458899999999999999999999999988653 2322
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.-..-|+|.+.+.+..||..++ ..+....+.|.|--
T Consensus 119 tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 119 TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 2334578999999999999999 78999989998853
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.39 E-value=2.2e-06 Score=63.97 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=64.9
Q ss_pred ceeeecCCCCCCcHHHHHHHHhc--CCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC----CeEEEE
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSK--YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE----GHILNC 320 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~--~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~----G~~l~V 320 (393)
+||.|+|||...|.++|.+++.. .|..-.+-++.|..++.+.|||||-|.+++.|.+-...++ ..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998865 3677788899998889999999999999999999999888 4443 466677
Q ss_pred EEcc
Q 016219 321 QRAI 324 (393)
Q Consensus 321 ~~a~ 324 (393)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 145
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=4.4e-08 Score=96.80 Aligned_cols=166 Identities=19% Similarity=0.149 Sum_probs=127.8
Q ss_pred CcCeEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAE-TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~-~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
..+...+.|+-+..... ..+..|..+|.|..|++...........++++.+....++..|.....+.+.++...+..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 34567788888777766 56788899999999998763323334448999999999999998888888888877776655
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~ 287 (393)
.......... .+.....-.++||.||++.+.+.+|...|..+|.|..++|.....+++
T Consensus 650 ~~~~~~~~kv----------------------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~ 707 (881)
T KOG0128|consen 650 AEEKEENFKV----------------------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKR 707 (881)
T ss_pred chhhhhccCc----------------------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccc
Confidence 4432211111 111223345899999999999999999999999999998887778899
Q ss_pred CccEEEEEecCHHHHHHHHHcCCCccCCe
Q 016219 288 PKGFCLFVYKTVDAAKKALEEPHKNFEGH 316 (393)
Q Consensus 288 ~kg~aFV~F~~~~~A~~Al~~~~~~~~G~ 316 (393)
.+|+|||.|..++++.+|+......+.|+
T Consensus 708 ~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 708 FRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred cccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 99999999999999999999888656663
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=2.4e-07 Score=77.45 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=69.6
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+||-..++++-|.++|-+.|+|..|.|+.++ .+..+ ||||.|.+.-++.-|+..+| ..+.++.+.|.+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34699999999999999999999999999999998775 45556 99999999999999999999 78888888887754
Q ss_pred cC
Q 016219 325 DG 326 (393)
Q Consensus 325 ~~ 326 (393)
..
T Consensus 86 G~ 87 (267)
T KOG4454|consen 86 GN 87 (267)
T ss_pred CC
Confidence 43
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.29 E-value=6.2e-06 Score=61.58 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=58.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
+||.|+|||...|...|.+++.. .|..--+.++.|..++.+.|||||.|.++..|.+.....++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 58999999999999999998865 366777888999989999999999999999999999988865
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.13 E-value=7.7e-06 Score=58.05 Aligned_cols=66 Identities=14% Similarity=0.285 Sum_probs=46.5
Q ss_pred ceeeecCCCCCCcHHHH----HHHHhcCC-CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 248 RKIFVSNVGSELEPQKL----LAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L----~~~F~~~G-~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
..|||.|||.+.+...| ++++.-|| .|..|. .+.|+|.|.+++.|.+|.+.|+ -.+.|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999998887655 56676776 455542 5789999999999999999999 78999999999
Q ss_pred Ec
Q 016219 322 RA 323 (393)
Q Consensus 322 ~a 323 (393)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 96
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.10 E-value=2.5e-06 Score=76.90 Aligned_cols=84 Identities=29% Similarity=0.319 Sum_probs=75.8
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCee--------EEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~--------~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G 315 (393)
....+|||-+||..++.++|..+|.+||.|. .|.|.+|+.|+.+||-|.|+|.+...|+.|+..++ ..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3346899999999999999999999999885 37788899999999999999999999999999999 88999
Q ss_pred eEEEEEEcccCCC
Q 016219 316 HILNCQRAIDGPK 328 (393)
Q Consensus 316 ~~l~V~~a~~~~~ 328 (393)
.+|+|.+|..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999876654
No 150
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.07 E-value=4e-06 Score=74.87 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=64.8
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCC--CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G--~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
-++|||||-|.+|+++|.+.+...| .|..++++.++.+|.+||||+|...+..+..+.+..|- ++|.|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4899999999999999999988776 36778888888999999999999999999999999999 8899966555
No 151
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.05 E-value=3.6e-06 Score=72.31 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=58.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCcce----EEEEEecCHHHHHHHHHcCCCc-c
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS--------GKSKG----YGFILFKTRSGARKALKEPQKK-I 196 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~--------~~~~g----~afv~f~~~~~a~~a~~~~~~~-~ 196 (393)
.-.||+++||+.+...-|+++|++||.|-.|.+.....+ |.+++ -|+|+|.+...|.++...||+. |
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999988766544 22222 3789999999999999999866 6
Q ss_pred CCee
Q 016219 197 GNRM 200 (393)
Q Consensus 197 ~g~~ 200 (393)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 6654
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=8.9e-06 Score=62.23 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=43.9
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-C-----ccCCeEEEEE
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K-----NFEGHILNCQ 321 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~-----~~~G~~l~V~ 321 (393)
..|+|.+++..++.++|+.+|+.||.|..|.+.+. -..|||.|.+.+.|..|+..+. . .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47899999999999999999999999999998643 3479999999999999998876 3 4556555544
Q ss_pred E
Q 016219 322 R 322 (393)
Q Consensus 322 ~ 322 (393)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.77 E-value=0.00011 Score=52.29 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=46.2
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHhhcC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 131 RKIFVHGLGWDTKAETLID----AFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~----~f~~~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
..|||.|||.+.....|+. ++.-+| .|..|. .+.|+|.|.+.+.|.+|.+.|.+. +.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999998877655 455564 576651 357999999999999999999976 899999998
Q ss_pred Ecc
Q 016219 205 LAS 207 (393)
Q Consensus 205 ~~~ 207 (393)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.66 E-value=3.2e-05 Score=70.20 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=70.4
Q ss_pred CeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccCC
Q 016219 131 RKIF-VHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vf-V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~ 209 (393)
.++| |++|++.++.++|+.+|..+|.|..++++.++.++.++|||||.|.....+..++..-...+.++.+.+......
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999988335578888888776544
Q ss_pred CC
Q 016219 210 PA 211 (393)
Q Consensus 210 ~~ 211 (393)
+.
T Consensus 265 ~~ 266 (285)
T KOG4210|consen 265 PK 266 (285)
T ss_pred cc
Confidence 33
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.52 E-value=0.00015 Score=55.48 Aligned_cols=57 Identities=32% Similarity=0.446 Sum_probs=37.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 193 (393)
..|+|.+++..++.++|+.+|+.||.|..|.+.+.. ..|||.|.+.+.|+.|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHH
Confidence 468999999999999999999999999998875532 269999999999999998664
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.52 E-value=0.00046 Score=51.94 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=53.0
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEe-eeecC------CCCCCccEEEEEecCHHHHHHHHHcCCCccCCe-EE
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP-LGIDK------ATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGH-IL 318 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~-i~~d~------~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~-~l 318 (393)
.+-|.|-+.|.. ....|.+.|++||.|.... +.++. .......+..|+|.++.+|.+||...+..|.|. .+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 346888899887 6688899999999998775 11110 011236799999999999999999999888885 55
Q ss_pred EEEEcc
Q 016219 319 NCQRAI 324 (393)
Q Consensus 319 ~V~~a~ 324 (393)
-|.++.
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577763
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.49 E-value=0.00024 Score=46.88 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=42.2
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHH
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al 306 (393)
+.|-|.+.+.... +.|+.+|..||.|..+.+.. ..-+.||+|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4678888887655 55666899999999998862 2568999999999999986
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.00014 Score=65.89 Aligned_cols=84 Identities=24% Similarity=0.237 Sum_probs=72.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cC
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IG 197 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~ 197 (393)
....-+|||-+||..++...|.++|.++|.|. .|.|-+++.|+++||-|.|.|.+...|+.|+.-+... +.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34456899999999999999999999999874 4667888899999999999999999999999988855 88
Q ss_pred CeeeEEEEccCCC
Q 016219 198 NRMTACQLASIGP 210 (393)
Q Consensus 198 g~~i~v~~~~~~~ 210 (393)
+..|.|.++...+
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 8888887776544
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.47 E-value=0.00015 Score=67.00 Aligned_cols=66 Identities=27% Similarity=0.332 Sum_probs=56.7
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeec---CC--CCCC--------ccEEEEEecCHHHHHHHHHcCC
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID---KA--TGKP--------KGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d---~~--~g~~--------kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
-..++|.+.|||.+-.-+.|..+|+.||.|..|+|+.- +. .+.+ +-+|||+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46689999999999999999999999999999999865 22 2222 4579999999999999999997
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00027 Score=67.42 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=61.3
Q ss_pred cceeeecCCCCCC--c----HHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc-CCeEE
Q 016219 247 QRKIFVSNVGSEL--E----PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-EGHIL 318 (393)
Q Consensus 247 ~~~lfV~nLp~~~--t----~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~-~G~~l 318 (393)
...|+|-|+|--- - ..-|..+|+++|.|..+.++.+..+| ++||.|++|.+..+|..|++.+| +.| ..+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3589999998732 1 23456899999999999999886555 89999999999999999999999 444 46777
Q ss_pred EEEEc
Q 016219 319 NCQRA 323 (393)
Q Consensus 319 ~V~~a 323 (393)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77554
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=0.00066 Score=58.70 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=80.1
Q ss_pred HHHHHHcCCCc-cCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHH
Q 016219 185 ARKALKEPQKK-IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQK 263 (393)
Q Consensus 185 a~~a~~~~~~~-~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~ 263 (393)
|..|-..|... ..|+.++|.++.. ..|||.||..-++-+.
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------------------a~l~V~nl~~~~sndl 47 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH---------------------------------------AELYVVNLMQGASNDL 47 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc---------------------------------------ceEEEEecchhhhhHH
Confidence 44555556655 5899999988742 3799999999999999
Q ss_pred HHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-----CccCCeEEEEEEc
Q 016219 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-----KNFEGHILNCQRA 323 (393)
Q Consensus 264 L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-----~~~~G~~l~V~~a 323 (393)
|.+.|+.||+|....++.| ..+++.+-++|.|...-.|.+|+...+ .+..++...|...
T Consensus 48 l~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 48 LEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred HHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 9999999999999888887 578899999999999999999999986 3444555555443
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00056 Score=45.15 Aligned_cols=52 Identities=31% Similarity=0.472 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~ 189 (393)
+.|-|.+.++...+ .+..+|..||.|..+.+. ....+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 56889999977665 555589999999998765 23448999999999999986
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.34 E-value=0.00043 Score=61.93 Aligned_cols=80 Identities=14% Similarity=0.347 Sum_probs=61.5
Q ss_pred cceeeecCCCCCCcHHHH------HHHHhcCCCeeEEeeeecCCCCC-CccE--EEEEecCHHHHHHHHHcCC-CccCCe
Q 016219 247 QRKIFVSNVGSELEPQKL------LAFFSKYGEIEEGPLGIDKATGK-PKGF--CLFVYKTVDAAKKALEEPH-KNFEGH 316 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L------~~~F~~~G~I~~v~i~~d~~~g~-~kg~--aFV~F~~~~~A~~Al~~~~-~~~~G~ 316 (393)
..-+||-+||+.+-.+++ .++|.+||.|..|.|-+...... -.+. .||+|.+.++|.+||...+ ..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 346799999987766652 48999999999887754321111 1232 3999999999999999999 789999
Q ss_pred EEEEEEcccC
Q 016219 317 ILNCQRAIDG 326 (393)
Q Consensus 317 ~l~V~~a~~~ 326 (393)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 164
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.29 E-value=0.001 Score=60.84 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=67.8
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCC---CCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEcc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT---GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~---g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~ 324 (393)
..|.|.||.+.+|.++++.||.-.|.|..++|+..... ....-.|||.|.+...+..|-..-|..|-++.|.|....
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 37999999999999999999999999999999864321 223568999999999999998888888888888887765
Q ss_pred cCCCC
Q 016219 325 DGPKP 329 (393)
Q Consensus 325 ~~~~~ 329 (393)
....+
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 55443
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.16 E-value=0.00039 Score=62.43 Aligned_cols=75 Identities=21% Similarity=0.398 Sum_probs=64.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGE--IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~--i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
...+|||||-+.+|+++|.+.+...|- +.++++.-++.+|++||||+|...+..++.+.++.+..+ |.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 357899999999999999998887764 778888888889999999999999999999999999854 777655543
No 166
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0016 Score=61.85 Aligned_cols=67 Identities=24% Similarity=0.245 Sum_probs=60.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 192 (393)
.-...||||||+||.-++..+|..+|. -||.|..+-|=+|+.-+-++|-|=|.|.+..+-.+||..-
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 334568999999999999999999998 6999999999999778889999999999999999999764
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.0011 Score=59.31 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=57.4
Q ss_pred eEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEeecCCCC-CcceE--EEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 132 KIFVHGLGWDTKAETL------IDAFKQYGEIEDCKAVCDKVSG-KSKGY--GFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l------~~~f~~~G~i~~~~i~~~~~~~-~~~g~--afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
-|||-+||+.+..+++ .++|.+||.|..|.|-+..... ...+. .||+|.+.++|.+||....+. +.||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4799999988877662 4689999999887664432111 11222 399999999999999999876 799999
Q ss_pred EEEEcc
Q 016219 202 ACQLAS 207 (393)
Q Consensus 202 ~v~~~~ 207 (393)
++.+..
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 987753
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.12 E-value=0.00028 Score=60.90 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=58.5
Q ss_pred eeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCC--------CCCcc----EEEEEecCHHHHHHHHHcCC-CccCC
Q 016219 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT--------GKPKG----FCLFVYKTVDAAKKALEEPH-KNFEG 315 (393)
Q Consensus 249 ~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~--------g~~kg----~aFV~F~~~~~A~~Al~~~~-~~~~G 315 (393)
.||+++||+.+....|+++|+.||.|-.|.+.+...+ |..++ -|.|+|.+...|.++...|| ..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 8999999999999999999999999999988765433 22332 27899999999999999999 78888
Q ss_pred eE
Q 016219 316 HI 317 (393)
Q Consensus 316 ~~ 317 (393)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 64
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0015 Score=62.63 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=58.3
Q ss_pred CcCeEEEcCCCCCCC------HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c-CCee
Q 016219 129 VHRKIFVHGLGWDTK------AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-GNRM 200 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~-~g~~ 200 (393)
....|+|.|+|---. ..-|..+|+++|+|....++.+..+| ++||.|++|++..+|..|++.+++. + .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345799999994322 22456689999999999998888555 9999999999999999999999976 3 4444
Q ss_pred eEEE
Q 016219 201 TACQ 204 (393)
Q Consensus 201 i~v~ 204 (393)
..+.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 4443
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.94 E-value=0.0035 Score=50.13 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 262 ~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
.+|.+.|..||.|.-||++- +.-+|+|.+-.+|.+|+...+..++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 37778899999999998874 358999999999999999999999999999998654
No 171
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.91 E-value=0.0013 Score=63.27 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCccccccceeeecCCCCCCcHHHHHHHHh-cCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCC----ccC
Q 016219 240 HQQSEYTQRKIFVSNVGSELEPQKLLAFFS-KYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK----NFE 314 (393)
Q Consensus 240 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~-~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~----~~~ 314 (393)
.+......+.|||.||-..+|.-+|+.++. .+|.|+...|- + -|..|||.|.+.++|...+.+||. .-+
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD--k----IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD--K----IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH--H----hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 344566778999999999999999999998 67777777542 2 267899999999999999999992 335
Q ss_pred CeEEEEEEccc
Q 016219 315 GHILNCQRAID 325 (393)
Q Consensus 315 G~~l~V~~a~~ 325 (393)
++.|.+.|+..
T Consensus 511 PK~L~adf~~~ 521 (718)
T KOG2416|consen 511 PKHLIADFVRA 521 (718)
T ss_pred CceeEeeecch
Confidence 68888888743
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.89 E-value=0.0059 Score=46.01 Aligned_cols=76 Identities=12% Similarity=0.189 Sum_probs=50.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeE
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCK-AVCDK------VSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTA 202 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~-i~~~~------~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~ 202 (393)
.+-|.|-+.|+. ....|..+|++||.|++.. +.++. .......+-.|+|.++.+|.+||......+.|..+-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 356889999988 5568888999999998875 11110 011234589999999999999999988778776544
Q ss_pred -EEEc
Q 016219 203 -CQLA 206 (393)
Q Consensus 203 -v~~~ 206 (393)
|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 4443
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.85 E-value=0.0032 Score=55.51 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=57.3
Q ss_pred ceeeecCCC--CCCc---HHHHHHHHhcCCCeeEEeeeecCCCCCC-ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 248 RKIFVSNVG--SELE---PQKLLAFFSKYGEIEEGPLGIDKATGKP-KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 248 ~~lfV~nLp--~~~t---~~~L~~~F~~~G~I~~v~i~~d~~~g~~-kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
+.|.++|+- -.++ ++++.+.+.+||.|..|.|+.++..-.. ---.||+|...++|.+|+-.|| ..|+||.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 346666652 2333 4578899999999999998876532222 2348999999999999999999 8999998887
Q ss_pred EEc
Q 016219 321 QRA 323 (393)
Q Consensus 321 ~~a 323 (393)
.|-
T Consensus 362 ~Fy 364 (378)
T KOG1996|consen 362 CFY 364 (378)
T ss_pred eec
Confidence 663
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.74 E-value=0.0069 Score=47.77 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=58.2
Q ss_pred ccccceeeecCCCCCC----cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEE
Q 016219 244 EYTQRKIFVSNVGSEL----EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILN 319 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~----t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~ 319 (393)
.++..+|.|+=|..++ +-..|...++.||+|.+|.+.- +.-|.|.|.+..+|-+|+.+++...-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3455688888766654 3344556678999999998752 5579999999999999999999888999999
Q ss_pred EEEc
Q 016219 320 CQRA 323 (393)
Q Consensus 320 V~~a 323 (393)
|.|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 9985
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.73 E-value=0.011 Score=40.02 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQY----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 192 (393)
..|+|+++. +++.++|+.+|..| ++. .|.++-|. .|-|.|.+...|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999997 68889999999999 544 77888775 4999999999999999764
No 176
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.66 E-value=0.00058 Score=68.77 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=74.5
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
...+++||++||+..+++.+|+..|..||.|..|.|-+- .-+....||||.|.+.+.+-.|+..+. ..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345689999999999999999999999999999998654 245557799999999999999999988 455444666666
Q ss_pred cccCCCCCCCCCCCCCCCCC
Q 016219 323 AIDGPKPGKSHKCKPQCDWR 342 (393)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~ 342 (393)
..++.....+.+.+.-..|.
T Consensus 448 G~~kst~ttr~~sgglg~w~ 467 (975)
T KOG0112|consen 448 GQPKSTPTTRLQSGGLGPWS 467 (975)
T ss_pred cccccccceeeccCCCCCCC
Confidence 65544444444444444444
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.61 E-value=0.002 Score=59.72 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=58.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCCC--C--------cceEEEEEecCHHHHHHHHHc
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD---KVSG--K--------SKGYGFILFKTRSGARKALKE 191 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~~--~--------~~g~afv~f~~~~~a~~a~~~ 191 (393)
..+..+|+|.+-|||.+-.-+-|..+|+.+|.|..|+|+.- +.+. . .+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33457899999999999999999999999999999999765 3222 1 245799999999999999999
Q ss_pred CC
Q 016219 192 PQ 193 (393)
Q Consensus 192 ~~ 193 (393)
++
T Consensus 306 ~~ 307 (484)
T KOG1855|consen 306 LN 307 (484)
T ss_pred hc
Confidence 97
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.46 E-value=0.0013 Score=57.02 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=50.3
Q ss_pred HHHHHHHh-cCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 262 QKLLAFFS-KYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 262 ~~L~~~F~-~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
++|...|+ +||.|+.+.|..+. .-.-+|-+||.|...++|.+|+..|| ..+.|++|.+.+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 55666666 89999999876542 22347899999999999999999999 8999999999775
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.40 E-value=0.0095 Score=42.55 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=42.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 193 (393)
.-||--.+|..+...+|.++|+.||.| .|..+-+. .|||.....+.|..++..+.
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 345555599999999999999999999 77777665 59999999999999888765
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.34 E-value=0.0074 Score=58.35 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=59.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c---CCee
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQ-YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---GNRM 200 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~---~g~~ 200 (393)
....+..|||.||-..+|.-+|+.++.+ .|.|+...| | +-+..|||.|.+.+.|......||+. + +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445678999999999999999999985 666777633 2 23457999999999999999999865 2 6677
Q ss_pred eEEEEcc
Q 016219 201 TACQLAS 207 (393)
Q Consensus 201 i~v~~~~ 207 (393)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7777765
No 181
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.20 E-value=0.014 Score=50.71 Aligned_cols=74 Identities=27% Similarity=0.425 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-----CccCCeeeEEEE
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-----KKIGNRMTACQL 205 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-----~~~~g~~i~v~~ 205 (393)
..|||.||+.-+.-+.|...|+.||+|....++.|. .++..+-++|.|...-.|.+|+..+. ....++...|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 579999999999999999999999999887666665 78888899999999999999998875 223555554433
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.08 E-value=0.029 Score=44.94 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=45.6
Q ss_pred HHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccC
Q 016219 146 TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (393)
Q Consensus 146 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 208 (393)
+|.+.|..||.+.-||++-+. -+|+|.+-.+|.+|+.....++.|+.+.+.+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 667788899999888877653 8999999999999999999999999999988653
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.00 E-value=0.035 Score=43.89 Aligned_cols=74 Identities=22% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCCcCeEEEcCCCCCCC----HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeE
Q 016219 127 DPVHRKIFVHGLGWDTK----AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTA 202 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t----~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~ 202 (393)
++.-.||.|+=|..++. ...+...++.||+|.+|.+. | +..|.|.|.+..+|-+|+.+.+....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 45556888876666553 33444557889999998653 2 3369999999999999999999999999999
Q ss_pred EEEcc
Q 016219 203 CQLAS 207 (393)
Q Consensus 203 v~~~~ 207 (393)
|.+..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 98864
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.90 E-value=0.031 Score=40.01 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=40.5
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
+.++|. +|..|-..+|.++|+.||.|.---| - -.-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~-------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-N-------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-C-------TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-c-------CCcEEEEeecHHHHHHHHHHhc
Confidence 456666 9999999999999999998753333 2 3469999999999999988876
No 185
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.81 E-value=0.0056 Score=56.69 Aligned_cols=76 Identities=16% Similarity=0.292 Sum_probs=59.8
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC--CccCCeEEEEEEccc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQRAID 325 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~--~~~~G~~l~V~~a~~ 325 (393)
..||++||.+.++..+|..+|...-.-..-.++ ...||+||.+.+...|.+|++.++ ..+.|+++.|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 369999999999999999999755111111111 127999999999999999999999 588999999998877
Q ss_pred CCCC
Q 016219 326 GPKP 329 (393)
Q Consensus 326 ~~~~ 329 (393)
+...
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 6543
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.41 E-value=0.0084 Score=52.14 Aligned_cols=64 Identities=19% Similarity=0.386 Sum_probs=50.1
Q ss_pred HHHHHHh-hcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCCC
Q 016219 146 TLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGP 210 (393)
Q Consensus 146 ~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~~ 210 (393)
+|...|. +||.|+++.|..+. .-.-.|-+||.|...++|.+|+..+|+. +.|++|.+.+.....
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 4444445 89999998765543 3356789999999999999999999976 799999998875433
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.00 E-value=0.16 Score=34.41 Aligned_cols=53 Identities=28% Similarity=0.408 Sum_probs=42.2
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcC----CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKY----GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~----G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~ 309 (393)
..|+|+++. +++.++|+.+|..| ++ ..|.-+-|. -|-|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 489999984 58889999999998 43 355554442 4889999999999999875
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.88 E-value=0.085 Score=46.80 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 144 AETLIDAFKQYGEIEDCKAVCDKVSGKS-KGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 144 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~-~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
++++++-+.+||.|..|.|.-.+..... .---||+|...++|.+|+-.+|+. |+||.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567788999999999988766532221 224799999999999999999987 688888777654
No 189
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.69 E-value=0.034 Score=54.77 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=62.2
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
..+..-++||+||-+.+..+-++.+...||.|.++.... |||..|..+..+..|+..++ ..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 344556999999999999999999999999999887542 99999999999999999999 88989888776
Q ss_pred E
Q 016219 322 R 322 (393)
Q Consensus 322 ~ 322 (393)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 190
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.27 E-value=2.3 Score=38.22 Aligned_cols=179 Identities=12% Similarity=0.161 Sum_probs=107.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC-------CCCcceEEEEEecCHHHHHHHH----HcC-
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV-------SGKSKGYGFILFKTRSGARKAL----KEP- 192 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-------~~~~~g~afv~f~~~~~a~~a~----~~~- 192 (393)
.+.-..|.|.+.||...++-..+...|-+||+|++|.++.+.. ..+....+.+-|-+.+.+.... +.+
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 4445568899999999999999999999999999999987651 1233456889999888765443 222
Q ss_pred --CCccCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHH-HH---
Q 016219 193 --QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKL-LA--- 266 (393)
Q Consensus 193 --~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L-~~--- 266 (393)
...+....+.+.+.................. ...........-.....+|.|.|. +...+..+++ ..
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~------~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~ 162 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADF------SDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLP 162 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccch------hhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhh
Confidence 2446666677766653222111100000000 000000011122344566788887 3344534433 22
Q ss_pred HHhcCC----CeeEEeeeecC--CCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 267 FFSKYG----EIEEGPLGIDK--ATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 267 ~F~~~G----~I~~v~i~~d~--~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
++..-+ -|++|.|+... ...-++.||.++|-+...|...+..+.
T Consensus 163 fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 163 FLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred hhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 222223 26677777432 234468899999999999999998877
No 191
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=94.17 E-value=0.18 Score=52.06 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.0
Q ss_pred CcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 170 KSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 170 ~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
.-+||-||+-.....+..||+-+.+...++.+.|
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~~~~lV 241 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYANRILLV 241 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheeccEEEE
Confidence 4688999999999999999988765444444433
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=0.14 Score=45.63 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=55.1
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCe-EEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGH-ILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~-~l~V~~a~~~ 326 (393)
.=|.|-++|.. .-.-|..+|++||.|+..... ..-.|-+|.|.+.-+|.+||.+....|+|. .|-|..+..+
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 34666677764 335788999999999987653 235699999999999999999988888874 4556665554
Q ss_pred C
Q 016219 327 P 327 (393)
Q Consensus 327 ~ 327 (393)
.
T Consensus 271 s 271 (350)
T KOG4285|consen 271 S 271 (350)
T ss_pred H
Confidence 4
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.70 E-value=0.029 Score=50.93 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=60.2
Q ss_pred ceeeecCCCCCCcHHHHH---HHHhcCCCeeEEeeeecCC--CCCC-ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 248 RKIFVSNVGSELEPQKLL---AFFSKYGEIEEGPLGIDKA--TGKP-KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~---~~F~~~G~I~~v~i~~d~~--~g~~-kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..++. .+.. -.-++|+|...++|..||...+ ..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888876655554 6899999999999987762 1111 1228999999999999999999 7888888777
Q ss_pred EEcccC
Q 016219 321 QRAIDG 326 (393)
Q Consensus 321 ~~a~~~ 326 (393)
.++..+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776554
No 194
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.58 E-value=0.11 Score=52.68 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=64.6
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEEEEcc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQRAI 324 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V~~a~ 324 (393)
.+.++.|.+-..+.--|..+|+.||.|.+++.+++ -..|.|.|.+.+.|..|+.+++ ..+-|-+.+|.+|.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 35566677778888999999999999999998876 4569999999999999999998 35678889999998
Q ss_pred cCCCCCC
Q 016219 325 DGPKPGK 331 (393)
Q Consensus 325 ~~~~~~~ 331 (393)
.-+....
T Consensus 373 ~~~~~ep 379 (1007)
T KOG4574|consen 373 TLPMYEP 379 (1007)
T ss_pred ccccccC
Confidence 7655433
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.44 E-value=0.1 Score=44.03 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=42.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEeec-CCCC-CcceEEEEEecCHHHHHHHHHcCCCc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQ-YGEI---EDCKAVCD-KVSG-KSKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~-~G~i---~~~~i~~~-~~~~-~~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
..+|.|++||+++|++++.+.++. ++.. ..+.-... .... ..-.-|||.|.+.+++...+..+++.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 458999999999999999987766 5554 23321111 1111 12346999999999999999988864
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.36 E-value=0.074 Score=50.36 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=60.2
Q ss_pred cceeeecCCCCCC-cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSEL-EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~-t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
.+.|-+.-.|+.. |-++|..+|.+||.|..|.|-.. .-.|.|+|.+..+|-.|-......|++|.|+|.|-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3455566666654 67899999999999999887432 4469999999999988877777899999999999877
Q ss_pred CC
Q 016219 326 GP 327 (393)
Q Consensus 326 ~~ 327 (393)
.+
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.15 E-value=0.085 Score=44.49 Aligned_cols=79 Identities=10% Similarity=-0.030 Sum_probs=48.5
Q ss_pred cceeeecCCCCCCcHHHHHHHHhc-CCCe---eEEeeeecCC-CCC-CccEEEEEecCHHHHHHHHHcCC-CccC---C-
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSK-YGEI---EEGPLGIDKA-TGK-PKGFCLFVYKTVDAAKKALEEPH-KNFE---G- 315 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~-~G~I---~~v~i~~d~~-~g~-~kg~aFV~F~~~~~A~~Al~~~~-~~~~---G- 315 (393)
..+|.||+||+.+|++++++.++. ++.. ..+.-..... ... .-.-|||.|.+.+++..-...++ +.+. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999998877 6665 3333112211 111 23469999999999988888887 3332 2
Q ss_pred -eEEEEEEccc
Q 016219 316 -HILNCQRAID 325 (393)
Q Consensus 316 -~~l~V~~a~~ 325 (393)
....|.+|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 4456666643
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.80 E-value=0.15 Score=49.26 Aligned_cols=69 Identities=10% Similarity=0.177 Sum_probs=58.1
Q ss_pred ceeeecCCCCCCcHHHHHHHHhc--CCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEEEE
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSK--YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQR 322 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~--~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V~~ 322 (393)
+.|+|+-||.++-.++|+.+|.. |-.+.+|.+..+. + =||+|.+..+|+.|...|. ++|.|+.|..++
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 57799999999999999999964 7788888876542 2 4899999999999999998 789998887655
Q ss_pred c
Q 016219 323 A 323 (393)
Q Consensus 323 a 323 (393)
.
T Consensus 249 K 249 (684)
T KOG2591|consen 249 K 249 (684)
T ss_pred h
Confidence 3
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.66 E-value=0.1 Score=49.37 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCcCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDT-KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~-t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
.+++.|-+.-+|+.. +..+|..+|.+||.|.+|.+-.. .-.|.|+|.+...|-.|.....-.|.+|.|.+.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEe
Confidence 455677777777776 45789999999999999976443 23599999999999888888888899999999998
Q ss_pred cCCCCC
Q 016219 207 SIGPAT 212 (393)
Q Consensus 207 ~~~~~~ 212 (393)
...+..
T Consensus 444 nps~~t 449 (526)
T KOG2135|consen 444 NPSPVT 449 (526)
T ss_pred cCCccc
Confidence 765543
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.27 E-value=0.021 Score=56.18 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=100.7
Q ss_pred hhcccCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC
Q 016219 120 VRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN 198 (393)
Q Consensus 120 ~~~~~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g 198 (393)
+....+.-+...+|||+||...+..+-++.+...+|.|.+++... |+|+.|..+.....|+..+... +.|
T Consensus 30 ~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 30 IQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 334445566778999999999999999999999999997765432 9999999999999999888754 556
Q ss_pred eeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEe
Q 016219 199 RMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP 278 (393)
Q Consensus 199 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~ 278 (393)
..+.+..-.. ...++......... ...... .....+-++|+|+|....+......|.--+.+...+
T Consensus 101 ~kl~~~~d~q--~~~n~~k~~~~~~~----------~~~~f~--p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~ 166 (668)
T KOG2253|consen 101 QKLIENVDEQ--TIENADKEKSIANK----------ESHKFV--PSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRR 166 (668)
T ss_pred chhhccchhh--hhcCccccccchhh----------hhcccC--CchhHHHHHhhccccchhHHHHHHHHhccchhhhhh
Confidence 6655543210 00000000000000 000000 001145679999999988888888877655555444
Q ss_pred eeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 279 LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 279 i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
.+.. ......-++|-+|.+......++....
T Consensus 167 ~~~e-~d~h~~e~~~~~~~s~~~~~~~~~~~~ 197 (668)
T KOG2253|consen 167 QIAE-ADDHCLELEKTETESNSALSKEAESKK 197 (668)
T ss_pred hhHH-HHHHHHHHHHhhcccccccCccccccc
Confidence 4332 123334556656655554444444333
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.15 E-value=0.44 Score=40.38 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=44.5
Q ss_pred cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEEEEcccC
Q 016219 260 EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQRAIDG 326 (393)
Q Consensus 260 t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V~~a~~~ 326 (393)
....|+.+|..|+.+..+.+++. =+-..|.|.+.+.|.+|...++ ..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999988877642 3458999999999999999998 5799999999998543
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.69 E-value=0.23 Score=36.38 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=47.7
Q ss_pred EEEEecCHHHHHHHHHcCCCc--cCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeee
Q 016219 175 GFILFKTRSGARKALKEPQKK--IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252 (393)
Q Consensus 175 afv~f~~~~~a~~a~~~~~~~--~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 252 (393)
|+|+|.+..-|++.++.-... +.+..+.|......... .....-....+.++|.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~-----------------------~~k~qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGH-----------------------LQKFQVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCC-----------------------ceEEEEEEcccCCEEEE
Confidence 689999999999999877644 46666555443211110 00111123456689999
Q ss_pred cCCCCCCcHHHHHHHH
Q 016219 253 SNVGSELEPQKLLAFF 268 (393)
Q Consensus 253 ~nLp~~~t~~~L~~~F 268 (393)
.|||...+++.|+...
T Consensus 58 sgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKL 73 (88)
T ss_pred eCCCCCCChhhheeeE
Confidence 9999999999998764
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.67 E-value=1.6 Score=33.51 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=44.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCcc
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKI 196 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 196 (393)
.+.+...|..++.+.|..+...+- .|..++|+++.. .++-.+.+.|.+...|.......||+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 344444455555566665555543 478889988753 356679999999999999999999763
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.21 E-value=0.75 Score=41.25 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=47.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCee
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~ 200 (393)
.=|-|-++|+... .-|..+|.+||.|+.... +..-.+-+|.|.+.-+|++||......|.|..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALskng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhhcCeeeccce
Confidence 4466778887654 467789999999987643 23345899999999999999998876665543
No 205
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=89.85 E-value=0.17 Score=53.47 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=10.4
Q ss_pred CCHHHHHHHHhhcC
Q 016219 142 TKAETLIDAFKQYG 155 (393)
Q Consensus 142 ~t~~~l~~~f~~~G 155 (393)
.+.++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 46788888888664
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.80 E-value=0.15 Score=46.37 Aligned_cols=75 Identities=23% Similarity=0.359 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 131 RKIFVHGLGWDTKAETLI---DAFKQYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~----~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
.-+||-+|+...-.+.+. ++|.+||.|..|.+.++.. .+-. --+||+|...++|..||...++. +.|+.+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 357888899877666553 4899999999998877662 1111 13899999999999999999876 5677655
Q ss_pred EEEc
Q 016219 203 CQLA 206 (393)
Q Consensus 203 v~~~ 206 (393)
..+.
T Consensus 157 a~~g 160 (327)
T KOG2068|consen 157 ASLG 160 (327)
T ss_pred HhhC
Confidence 5443
No 207
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=0.73 Score=42.87 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=49.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKI 196 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 196 (393)
-...|-|.++|.....++|...|..|+. --.|+++-+. .||-.|.+...|..||..-+..+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceE
Confidence 4567899999999999999999999975 3466666654 69999999999999998755443
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.25 E-value=1.8 Score=41.08 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=55.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
++.|+|-.+|..++-.+|..|+..+- .|..++|+++... ++-...|.|.+..+|......+|++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCC
Confidence 78999999999999999999988764 5899999996532 3446899999999999999999976
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.05 E-value=0.48 Score=48.30 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=66.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc---cCCeeeEEEEc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK---IGNRMTACQLA 206 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~---~~g~~i~v~~~ 206 (393)
.-+.++-|.+-..+..-|..+|.+||.|.+++.+++-. .|.|.|.+.+.|-.|+..++++ +.|.+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34566777778888999999999999999999888763 6999999999999999999975 57888889888
Q ss_pred cCCCCCCCC
Q 016219 207 SIGPATTPA 215 (393)
Q Consensus 207 ~~~~~~~~~ 215 (393)
..-+...++
T Consensus 372 k~~~~~ep~ 380 (1007)
T KOG4574|consen 372 KTLPMYEPP 380 (1007)
T ss_pred cccccccCC
Confidence 766655544
No 210
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.02 E-value=4.7 Score=31.03 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=47.2
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcC-CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKY-GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~-G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~ 314 (393)
..+.+...|+.++-+.|..+.+.+ ..|..++|++|. ..++--+.++|.+...|..-....| +.++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 345555566677777777666665 447788998863 2346679999999999999999988 4443
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.41 E-value=2.9 Score=28.83 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 258 ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 258 ~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
.++-.+|+..+..|+- . +|..|+ .|| ||.|.+..+|.+|....+ ..+.+.+|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5688999999999974 2 333443 343 899999999999999988 556555543
No 212
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.77 E-value=1.3 Score=43.20 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=56.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC---CccCCee
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRM 200 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~~g~~ 200 (393)
...+.+.|.|+-||.++..++++.||.- +-++.+|..-.+. -=||+|.+..+|+.|.+.+. ..|.|+.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3445677899999999999999999974 6667787764432 26999999999999998887 3467776
Q ss_pred eEEEE
Q 016219 201 TACQL 205 (393)
Q Consensus 201 i~v~~ 205 (393)
|....
T Consensus 244 ImARI 248 (684)
T KOG2591|consen 244 IMARI 248 (684)
T ss_pred hhhhh
Confidence 65443
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.40 E-value=5.9 Score=33.59 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=42.4
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC--Cc-cCCeeeEEEEcc
Q 016219 143 KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ--KK-IGNRMTACQLAS 207 (393)
Q Consensus 143 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~-~~g~~i~v~~~~ 207 (393)
....|+.+|..|+.+....+++. =+-..|.|.+.+.|.+|...++ +. +.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999887766543 2358999999999999999988 54 899999998874
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.76 E-value=6.4 Score=38.77 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=59.8
Q ss_pred ccccceeeecCCCC-CCcHHHHHHHHhcC----CCeeEEeeeecC----------CCCC---------------------
Q 016219 244 EYTQRKIFVSNVGS-ELEPQKLLAFFSKY----GEIEEGPLGIDK----------ATGK--------------------- 287 (393)
Q Consensus 244 ~~~~~~lfV~nLp~-~~t~~~L~~~F~~~----G~I~~v~i~~d~----------~~g~--------------------- 287 (393)
...+++|-|.||.| .+...+|.-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 44567999999999 68899999999877 689999887531 1121
Q ss_pred ----------------CccEEEEEecCHHHHHHHHHcCC-CccC--CeEEEEEEc
Q 016219 288 ----------------PKGFCLFVYKTVDAAKKALEEPH-KNFE--GHILNCQRA 323 (393)
Q Consensus 288 ----------------~kg~aFV~F~~~~~A~~Al~~~~-~~~~--G~~l~V~~a 323 (393)
.--||.|+|.+...|........ ..|. |..|.++|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11379999999999999999888 4554 455666653
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.84 E-value=7 Score=27.56 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHhcCCC-----eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 258 ELEPQKLLAFFSKYGE-----IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 258 ~~t~~~L~~~F~~~G~-----I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.++..+|..++...+. |-.|+|. ..|+||+-... .|..++..|+ ..+.|++|+|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788889888877654 4566664 34889988664 7888899988 8999999999875
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.29 E-value=15 Score=36.33 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=49.3
Q ss_pred CcCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeecC----------CCCC-----------------------
Q 016219 129 VHRKIFVHGLGWD-TKAETLIDAFKQY----GEIEDCKAVCDK----------VSGK----------------------- 170 (393)
Q Consensus 129 ~~~~vfV~nLp~~-~t~~~l~~~f~~~----G~i~~~~i~~~~----------~~~~----------------------- 170 (393)
..++|-|-||.++ +...+|.-+|..| |.|.+|.|.... ..|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3468999999965 5778999998765 468888764211 0111
Q ss_pred --------------cceEEEEEecCHHHHHHHHHcCCCc
Q 016219 171 --------------SKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 171 --------------~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
..-||.|+|.+...|.+....+.|.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~ 291 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI 291 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc
Confidence 1237999999999999999999875
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.71 E-value=7 Score=37.33 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=54.5
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCC-CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G-~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~ 314 (393)
.+.|+|-.+|-.+|--||..|+..|- .|..++|++|.. ..+-...|.|.+..+|..-...+| ..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 56899999999999999999998764 588999998632 224558999999999999999988 5554
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.91 E-value=20 Score=24.70 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc
Q 016219 141 DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 141 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
.++-.+|+..+..|+-. +|+.++ +| =||.|.+..+|.++....++.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-CE-----EEEEECChHHHHHHHHhcCCC
Confidence 56778999999999744 444444 43 599999999999999998866
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.72 E-value=5.3 Score=33.30 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=54.3
Q ss_pred ceeeecCCCCCCc-----HHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCe-EEEE
Q 016219 248 RKIFVSNVGSELE-----PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-ILNC 320 (393)
Q Consensus 248 ~~lfV~nLp~~~t-----~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~-~l~V 320 (393)
.++++.+|+..+- ......+|.+|......++++ +.++..|.|.++..|..|..+++ ..|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4677777776442 223346777777766666553 25667789999999999999999 889988 8888
Q ss_pred EEcccCCC
Q 016219 321 QRAIDGPK 328 (393)
Q Consensus 321 ~~a~~~~~ 328 (393)
.++.+...
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 88865543
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.47 E-value=12 Score=33.47 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=35.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHH
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~ 183 (393)
..-|||+|||.++--.+|+..+.+.|-+ ..+|-. . -+.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw---k-g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW---K-GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEee---e-cCCcceeEecCCcc
Confidence 3459999999999999999999887643 222211 1 24667999997543
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.03 E-value=9.7 Score=35.77 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=48.7
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCcc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNF 313 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~ 313 (393)
.-.+.|=|.++|...-.++|...|..|+. ..++|.+-. .-.||-.|.+...|..||-.-+..+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD-----dthalaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD-----DTHALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee-----cceeEEeecchHHHHHHhhccCceE
Confidence 34578999999999999999999999975 444544321 3479999999999999997755333
No 222
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=66.86 E-value=6.4 Score=30.63 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=29.8
Q ss_pred ceeeecCCCCCC---------cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHH
Q 016219 248 RKIFVSNVGSEL---------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303 (393)
Q Consensus 248 ~~lfV~nLp~~~---------t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~ 303 (393)
-++.|-|++... +.+.|+..|+.|.++. ++.+.++ .-+.|++.|.|..--.-.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHH
Confidence 367788886643 4578999999999875 6666554 245899999997654443
No 223
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=65.79 E-value=14 Score=33.33 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=63.4
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecC-------CCCCCccEEEEEecCHHHHHH----HHHcCC-
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK-------ATGKPKGFCLFVYKTVDAAKK----ALEEPH- 310 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~-------~~g~~kg~aFV~F~~~~~A~~----Al~~~~- 310 (393)
....+|.|.+.|+..+++--.+...|-+||+|++|.++.+. ...+......+.|-+...|.. .++.|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44566899999999999999999999999999999999764 112234568899988887754 445555
Q ss_pred --CccCCeEEEEEEccc
Q 016219 311 --KNFEGHILNCQRAID 325 (393)
Q Consensus 311 --~~~~G~~l~V~~a~~ 325 (393)
..+.-..|.|.|..-
T Consensus 91 fK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHhcCCcceeEEEEEE
Confidence 567778888887754
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=65.61 E-value=26 Score=26.85 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCCCCcHHHHHHHHh---cCCCeeEEeeeecCCCCCCccEEEEEecCH
Q 016219 255 VGSELEPQKLLAFFS---KYGEIEEGPLGIDKATGKPKGFCLFVYKTV 299 (393)
Q Consensus 255 Lp~~~t~~~L~~~F~---~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~ 299 (393)
-|+.+|-.+|+++|+ .|-.|.+-.+.+|--..-+-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 488999999999996 355566666655522222234688888655
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.50 E-value=7.7 Score=31.51 Aligned_cols=118 Identities=14% Similarity=-0.015 Sum_probs=73.2
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccC
Q 016219 132 KIFVHGLG--WDTKAETLIDAFKQ-YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (393)
Q Consensus 132 ~vfV~nLp--~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 208 (393)
...||.+. ...+-..|...+.+ ++....+.+.. ...++..+.|.+.+++.+++..-.-.+.+..+.+..-..
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEecccccccccchhhhhhcc
Confidence 34455553 34566667666654 33332333322 134689999999999999988766667777666655432
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCC-CcHHHHHHHHhcCCCeeEEeee
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLG 280 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~t~~~L~~~F~~~G~I~~v~i~ 280 (393)
........ .....-=|-|.|||.. ++++-|+.+-+.+|.+..+...
T Consensus 92 ~~~~~~~~--------------------------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 92 DFNPSEVK--------------------------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cccccccc--------------------------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 11110000 0111124667899985 7889999999999999988754
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.24 E-value=11 Score=29.37 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=28.4
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHH
Q 016219 132 KIFVHGLGWD---------TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSG 184 (393)
Q Consensus 132 ~vfV~nLp~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~ 184 (393)
++.|-|+|.. ++...|...|+.|.++ .++.+..+. -++|++.|.|..--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChH
Confidence 4566677543 3557899999999887 577777653 578999999975443
No 227
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=62.36 E-value=4.1 Score=38.27 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=51.7
Q ss_pred ccceeeecCCCCCCcHH--------HHHHHHhc--CCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHH
Q 016219 246 TQRKIFVSNVGSELEPQ--------KLLAFFSK--YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~--------~L~~~F~~--~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~ 307 (393)
..+.+|+.+++...+.+ ++..+|.. ++++..++.-++.....++|-.|++|.....|++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34678888887765554 99999999 7888889888887677889999999999999999985
No 228
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=60.92 E-value=26 Score=24.31 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCC-eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 262 QKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 262 ~~L~~~F~~~G~-I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
++|.+-|...|. |..|.-+..+.++.+--.-||++....+ ..+.++ ..|.|..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCC
Confidence 467888888774 6677777766667777788888877655 444666 78899999988754
No 229
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.46 E-value=1.7 Score=41.03 Aligned_cols=77 Identities=4% Similarity=-0.234 Sum_probs=62.1
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
.+.|+..||...++.++.-+|..||.|.-+.+-+.-..|..+-.+||+-.+ ..|..+|.-+. ..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 467889999999999999999999999988887766667777889988765 45666776666 677888888887754
No 230
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=57.87 E-value=3.5 Score=40.12 Aligned_cols=7 Identities=14% Similarity=0.283 Sum_probs=2.8
Q ss_pred CCHHHHH
Q 016219 142 TKAETLI 148 (393)
Q Consensus 142 ~t~~~l~ 148 (393)
++.+.|+
T Consensus 549 ~~r~~ik 555 (615)
T KOG0526|consen 549 ASRESIK 555 (615)
T ss_pred hhhhhHh
Confidence 3444444
No 231
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=57.59 E-value=4.6 Score=37.75 Aligned_cols=11 Identities=0% Similarity=-0.281 Sum_probs=5.0
Q ss_pred CCCCHHHHHHH
Q 016219 140 WDTKAETLIDA 150 (393)
Q Consensus 140 ~~~t~~~l~~~ 150 (393)
..++..+|..+
T Consensus 229 ~~v~~~dIe~~ 239 (324)
T PF05285_consen 229 ELVDPSDIEGF 239 (324)
T ss_pred ccCCHHHHHhH
Confidence 34444555433
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.31 E-value=28 Score=31.27 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCH
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV 299 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~ 299 (393)
..-|+|+|||.++--.+|+..+.+.|-+ -.+|.+ .-+.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCc
Confidence 3569999999999999999999887643 233332 22478899999654
No 233
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=56.55 E-value=8.2 Score=32.52 Aligned_cols=7 Identities=43% Similarity=0.885 Sum_probs=2.8
Q ss_pred HHHHhcC
Q 016219 265 LAFFSKY 271 (393)
Q Consensus 265 ~~~F~~~ 271 (393)
..+|++|
T Consensus 177 e~L~~ky 183 (187)
T PF11081_consen 177 EALYNKY 183 (187)
T ss_pred HHHHHHH
Confidence 3344443
No 234
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=56.21 E-value=8.8 Score=34.13 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=27.7
Q ss_pred cCeEEEcCCCCCC------------CHHHHHHHHhhcCCeeEEEEe
Q 016219 130 HRKIFVHGLGWDT------------KAETLIDAFKQYGEIEDCKAV 163 (393)
Q Consensus 130 ~~~vfV~nLp~~~------------t~~~l~~~f~~~G~i~~~~i~ 163 (393)
..|||+.+||-.| +++-|+..|..||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4589999999433 567899999999999988774
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=55.63 E-value=12 Score=33.36 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=28.6
Q ss_pred ccceeeecCCCCCC------------cHHHHHHHHhcCCCeeEEeeee
Q 016219 246 TQRKIFVSNVGSEL------------EPQKLLAFFSKYGEIEEGPLGI 281 (393)
Q Consensus 246 ~~~~lfV~nLp~~~------------t~~~L~~~F~~~G~I~~v~i~~ 281 (393)
.+.|||+.+||-.| ++.-|+..|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34588888887532 5678999999999999999874
No 236
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=55.19 E-value=56 Score=22.88 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEEEc
Q 016219 140 WDTKAETLIDAFKQYGE-----IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (393)
Q Consensus 140 ~~~t~~~l~~~f~~~G~-----i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~~~ 206 (393)
..++..+|..++...+. |-.|+|... |+||+-... .|..++..++ ..+.|+.+.+..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35678888888876644 556665432 789987755 6777888777 4589999988764
No 237
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=50.48 E-value=9.9 Score=39.97 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.6
Q ss_pred CCCCCcHHHHHHHHhc
Q 016219 255 VGSELEPQKLLAFFSK 270 (393)
Q Consensus 255 Lp~~~t~~~L~~~F~~ 270 (393)
.|..+....|+.+|+.
T Consensus 447 ~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 447 GPLEVPASELRKYFEP 462 (1024)
T ss_pred CccccchHhhhhhccC
Confidence 4677888899999974
No 238
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=48.80 E-value=7.5 Score=36.58 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=53.1
Q ss_pred CCcCeEEEcCCCCCCCHH--------HHHHHHhh--cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHc
Q 016219 128 PVHRKIFVHGLGWDTKAE--------TLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~--------~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 191 (393)
...|.+|+.+++...+.. ++...|.. .+++..+++.++.....++|..|++|.....+++++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 345778998888766655 89999988 67888888888877778899999999999999988753
No 239
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=48.79 E-value=67 Score=35.26 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=9.0
Q ss_pred CCCCCCCHHHHHHHHh
Q 016219 137 GLGWDTKAETLIDAFK 152 (393)
Q Consensus 137 nLp~~~t~~~l~~~f~ 152 (393)
.||.....-++-.+..
T Consensus 1448 ~lp~~~~k~~mssiVe 1463 (1640)
T KOG0262|consen 1448 KLPLDKEKLDMSSIVE 1463 (1640)
T ss_pred EecCCCcchHHHHHHH
Confidence 4776655555555544
No 240
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.48 E-value=46 Score=23.10 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCC-eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 262 QKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 262 ~~L~~~F~~~G~-I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.+|.+.|..+|. +..|+-++.+.++.+-..-||.......-.. .++ ..|+|+++.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 467888888884 7778877776666667778888866543222 455 7889999888764
No 241
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.61 E-value=22 Score=29.68 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=40.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHcCCCc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG--KSKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
.|++|.. |.+...++|..+-+ |.+..+.+-+.. .+ ..+|-.||+|.+.+.|.+.+......
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~ 173 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEK 173 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhh
Confidence 4677777 33333344444444 788888765443 33 56889999999999999888776543
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.94 E-value=54 Score=22.22 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHhhcCCeeEEEE
Q 016219 145 ETLIDAFKQYGEIEDCKA 162 (393)
Q Consensus 145 ~~l~~~f~~~G~i~~~~i 162 (393)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999865544
No 243
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=42.21 E-value=9.8 Score=40.29 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=4.1
Q ss_pred eEEEcCCC
Q 016219 132 KIFVHGLG 139 (393)
Q Consensus 132 ~vfV~nLp 139 (393)
-+||-.+|
T Consensus 906 ~~wvl~~P 913 (1096)
T TIGR00927 906 AIYLFLLP 913 (1096)
T ss_pred eEeEEecc
Confidence 45555455
No 244
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=42.07 E-value=14 Score=34.33 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.2
Q ss_pred CeEEEcC
Q 016219 131 RKIFVHG 137 (393)
Q Consensus 131 ~~vfV~n 137 (393)
+.|+|.|
T Consensus 342 ~~liVAN 348 (542)
T KOG0699|consen 342 DKLIVAN 348 (542)
T ss_pred ceEEEec
Confidence 3455544
No 245
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.74 E-value=7.6 Score=38.09 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=46.8
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
..++|||+|++++++-.+|..+|..+--+..+-+-.+....+..-++.|+|.---...-|+.+||
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 34789999999999999999999988766666554332223345678899976665555666555
No 246
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=37.69 E-value=1.3e+02 Score=20.80 Aligned_cols=60 Identities=10% Similarity=0.215 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEEEcc
Q 016219 145 ETLIDAFKQYGE-IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (393)
Q Consensus 145 ~~l~~~f~~~G~-i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~~~~ 207 (393)
++|.+-|...|- |..|.-+..+.++.....-||++....+.. +.++ ..+++..+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 467788888774 778877777767777788899888765522 2344 34788888876654
No 247
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=37.23 E-value=60 Score=31.33 Aligned_cols=15 Identities=0% Similarity=-0.006 Sum_probs=6.5
Q ss_pred HHHHHhcCCCeeEEe
Q 016219 264 LLAFFSKYGEIEEGP 278 (393)
Q Consensus 264 L~~~F~~~G~I~~v~ 278 (393)
|..+|.....|..|.
T Consensus 279 vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 279 VETLYGHQDGVLGID 293 (479)
T ss_pred HHHHhCCccceeeec
Confidence 344554444444443
No 248
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=35.10 E-value=33 Score=33.55 Aligned_cols=12 Identities=17% Similarity=0.147 Sum_probs=6.5
Q ss_pred CCCCCcHHHHHH
Q 016219 255 VGSELEPQKLLA 266 (393)
Q Consensus 255 Lp~~~t~~~L~~ 266 (393)
|+++|-......
T Consensus 405 LHPSWeAkkk~K 416 (432)
T PF09073_consen 405 LHPSWEAKKKAK 416 (432)
T ss_pred CCccHHHHHHHH
Confidence 666665544443
No 249
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.80 E-value=2.2e+02 Score=29.38 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=47.0
Q ss_pred eeeecCCCC--CCcHHHHHHHHhcCCCee-----EEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 249 KIFVSNVGS--ELEPQKLLAFFSKYGEIE-----EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 249 ~lfV~nLp~--~~t~~~L~~~F~~~G~I~-----~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
++||. +.. .++.-+|..++..-+.|. .|+|. ..|.||+... ..|...+..|+ ..+.|+.|.|
T Consensus 488 ~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 488 LYRIE-VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEe-cccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 44443 433 678888888887655543 45554 4588999865 45778888887 7899999999
Q ss_pred EEcc
Q 016219 321 QRAI 324 (393)
Q Consensus 321 ~~a~ 324 (393)
..+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 250
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=34.79 E-value=23 Score=33.02 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=3.6
Q ss_pred cceEEEEEe
Q 016219 171 SKGYGFILF 179 (393)
Q Consensus 171 ~~g~afv~f 179 (393)
.--|-|-.|
T Consensus 452 pG~Ytytv~ 460 (520)
T KOG4434|consen 452 PGNYTYTVF 460 (520)
T ss_pred CCceEEEEE
Confidence 333444443
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.75 E-value=27 Score=30.50 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.9
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEe
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP 278 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~ 278 (393)
..+||+-|+|..+|++.|.++.+.+|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 46999999999999999999999999765543
No 252
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=32.87 E-value=68 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=25.2
Q ss_pred EEEEecCHHHHHHHHHcCC--CccCCeEEEEEEc
Q 016219 292 CLFVYKTVDAAKKALEEPH--KNFEGHILNCQRA 323 (393)
Q Consensus 292 aFV~F~~~~~A~~Al~~~~--~~~~G~~l~V~~a 323 (393)
|+|+|.....|.+.+++-. ..+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 6899999999999998877 4566777666553
No 253
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.12 E-value=16 Score=36.74 Aligned_cols=10 Identities=0% Similarity=0.072 Sum_probs=3.9
Q ss_pred ccCCeEEEEE
Q 016219 312 NFEGHILNCQ 321 (393)
Q Consensus 312 ~~~G~~l~V~ 321 (393)
.+.-+.+.|.
T Consensus 674 Ki~kk~v~VR 683 (754)
T KOG1980|consen 674 KIHKKYVVVR 683 (754)
T ss_pred eeeeeeEEEe
Confidence 3333444443
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.59 E-value=7 Score=38.32 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=42.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 193 (393)
++|||+|++++++-.+|..++..+--+..+-+-..........+.+|+|.---...-|+..++
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 589999999999999999999987655555443322233455678999974444444443333
No 255
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.57 E-value=50 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=28.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC 160 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~ 160 (393)
....++||+-|||..+|++-|..+.+++|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456799999999999999999999999865443
No 256
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.36 E-value=17 Score=32.41 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.9
Q ss_pred CCCcHHHHH
Q 016219 257 SELEPQKLL 265 (393)
Q Consensus 257 ~~~t~~~L~ 265 (393)
..+|.++|.
T Consensus 183 ~~lTQeElL 191 (240)
T PF05764_consen 183 RPLTQEELL 191 (240)
T ss_pred CCCCHHHHH
Confidence 334444443
No 257
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=28.08 E-value=90 Score=26.20 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=39.7
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC--CCccEEEEEecCHHHHHHHHHcCC
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG--KPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g--~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
.+++|.. |.+..-++|.++-+ |.+..|.+-+.. .+ ..+|-.||+|.+.+.|.+.+....
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 3567776 44444455555555 777777765432 23 458999999999999999877655
No 258
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=27.90 E-value=52 Score=32.17 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCC-CccCCeEE
Q 016219 299 VDAAKKALEEPH-KNFEGHIL 318 (393)
Q Consensus 299 ~~~A~~Al~~~~-~~~~G~~l 318 (393)
-+.+.+|-+.+. ..|.|+.|
T Consensus 409 WeAkkk~Ke~~~~a~FqGKKI 429 (432)
T PF09073_consen 409 WEAKKKAKEKQKIAKFQGKKI 429 (432)
T ss_pred HHHHHHHHHHhccCCCCCCcc
Confidence 344444444432 34444443
No 259
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=27.60 E-value=24 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=17.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHh
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFK 152 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~ 152 (393)
.+++||||.||..+-.+.=..++.
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHH
Confidence 468999999998876654444443
No 260
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=27.50 E-value=15 Score=24.52 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=21.1
Q ss_pred CccEEEEEecC-HHHHHHHHHcCCCccCCeEEEEEEcc
Q 016219 288 PKGFCLFVYKT-VDAAKKALEEPHKNFEGHILNCQRAI 324 (393)
Q Consensus 288 ~kg~aFV~F~~-~~~A~~Al~~~~~~~~G~~l~V~~a~ 324 (393)
++|||||...+ ..+.--.-..|+.-++|=.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 58999999987 22222233445566778777777754
No 261
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.64 E-value=28 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=11.0
Q ss_pred EEcCCCCCCCHHHHHHHHhhc
Q 016219 134 FVHGLGWDTKAETLIDAFKQY 154 (393)
Q Consensus 134 fV~nLp~~~t~~~l~~~f~~~ 154 (393)
|--.||..-+..+|...|-.|
T Consensus 354 fAq~lp~i~~p~d~y~~F~~~ 374 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVDV 374 (514)
T ss_pred ccccCCccCCcchhhhhheec
Confidence 333455555566666555444
No 262
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.23 E-value=1.2e+02 Score=30.15 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=45.4
Q ss_pred EEEcCCCCCC---CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeee
Q 016219 133 IFVHGLGWDT---KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMT 201 (393)
Q Consensus 133 vfV~nLp~~~---t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i 201 (393)
=+||||+.-. ....+..+-.+||+|..+++-.. -.|.-.+.+.|..++......+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 4688887433 34566667779999998876432 367888999999999998888888875
No 263
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.58 E-value=94 Score=27.98 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.2
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeee
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~ 281 (393)
....|+||||++|..=|..++...-.+....++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 3678999999999999999998665554444443
No 264
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.32 E-value=46 Score=29.05 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 016219 144 AETLIDAFK 152 (393)
Q Consensus 144 ~~~l~~~f~ 152 (393)
-.++...++
T Consensus 152 W~Em~~Ais 160 (217)
T PF07423_consen 152 WNEMLKAIS 160 (217)
T ss_pred HHHHHHHHH
Confidence 334444443
No 265
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=24.00 E-value=2e+02 Score=29.11 Aligned_cols=47 Identities=9% Similarity=0.204 Sum_probs=35.6
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecC
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~ 298 (393)
......||+.+|..+..++-=.++....--.+.+.|++ -||| |+|.-
T Consensus 298 Gl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r-------pgYA-IEYD~ 344 (621)
T COG0445 298 GLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR-------PGYA-IEYDY 344 (621)
T ss_pred CCCCceEecCcccccCCHHHHHHHHHhCcccccceeec-------ccee-eeecc
Confidence 34467999999999998887778887777788888876 3666 56643
No 266
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=1.4e+02 Score=26.85 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=33.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
.....|+|||+.++..-|..++...-.+... |.+-..+-|++.+..-+..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~----------------v~M~QkEva~Rl~A~pgsk 144 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDM----------------VLMVQKEVAERLVAKPGSK 144 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceE----------------EEEeHHHHHHHHhCCCCCc
Confidence 3467899999999999999988755444233 3333456677766665543
No 267
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=23.31 E-value=3e+02 Score=20.00 Aligned_cols=57 Identities=7% Similarity=0.145 Sum_probs=42.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 016219 133 IFVHGLGWDTKAETLIDAFKQ-YG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (393)
Q Consensus 133 vfV~nLp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 192 (393)
.|+--++..++..+|+..++. || .|..|+.+.-+ ....-|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 455558999999999999987 55 47777776654 22335999999988887776554
No 268
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.11 E-value=1e+02 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=22.6
Q ss_pred cEEEEEecCHHHHHHHHHcCC-CccCCeE
Q 016219 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (393)
Q Consensus 290 g~aFV~F~~~~~A~~Al~~~~-~~~~G~~ 317 (393)
.+.+|.|.+..+|.+|-+.+. ..+.++.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 368999999999999999887 5555553
No 269
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=23.10 E-value=22 Score=32.43 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.9
Q ss_pred eEEEcC
Q 016219 132 KIFVHG 137 (393)
Q Consensus 132 ~vfV~n 137 (393)
.+|..+
T Consensus 86 ~~F~~~ 91 (285)
T PF03896_consen 86 ILFPKP 91 (285)
T ss_pred EEeccc
Confidence 455544
No 270
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.78 E-value=94 Score=28.84 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=23.3
Q ss_pred EEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 292 CLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 292 aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
|||+|.+..+|..|++.+... .++.+.|..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-RPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-CCCCceEeeC
Confidence 799999999999999976522 2344566665
No 271
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=22.46 E-value=1.8e+02 Score=29.65 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=59.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
...+||+.|--...+..-+..++..++.+...+++.....+...+-+|++|..+..+..|...-+..+.-+.+.+
T Consensus 510 s~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 510 SQPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKS 584 (681)
T ss_pred CCCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccceec
Confidence 344889988888888888999999999999999988888887777899999999999777665555444444433
No 272
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.37 E-value=17 Score=34.66 Aligned_cols=74 Identities=5% Similarity=-0.140 Sum_probs=54.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEEEc
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~~~ 206 (393)
+.|+..||...++.++.-+|..||.|..+.+.+..+.|...-.+||+-.+. .+..+|..+. .++.|..+++.++
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcC
Confidence 467888999999999999999999999888777776777777888876643 3455555444 4456656665554
No 273
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.33 E-value=90 Score=28.06 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=22.7
Q ss_pred cceeeecCCCCCCcHHHHHHHHh--cCCCe
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFS--KYGEI 274 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~--~~G~I 274 (393)
...++|+|||+.++..-|.+++. .||.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 45789999999999999999987 44433
No 274
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=22.15 E-value=72 Score=31.44 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=12.0
Q ss_pred CCCCCcCeEEEcCCCCCC
Q 016219 125 DEDPVHRKIFVHGLGWDT 142 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~ 142 (393)
.-++.+.+++-|.|.+++
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v 191 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTV 191 (641)
T ss_pred eecCCCceeeeccccceE
Confidence 345556677788887655
No 275
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.98 E-value=1.6e+02 Score=29.42 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=45.0
Q ss_pred eecCCCCCC---cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEE
Q 016219 251 FVSNVGSEL---EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHIL 318 (393)
Q Consensus 251 fV~nLp~~~---t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l 318 (393)
+||||+.-. ....++.+=.+||+|-.+++-.- =.|.-.+.+.|..|+......+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 678887633 34555666678999999887432 378889999999999998888888875
No 276
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.95 E-value=3.2e+02 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.1
Q ss_pred EEEEEecCHHHH
Q 016219 174 YGFILFKTRSGA 185 (393)
Q Consensus 174 ~afv~f~~~~~a 185 (393)
|=.|.|.+.+.+
T Consensus 261 ~YvvRFnS~~e~ 272 (483)
T KOG2236|consen 261 YYVVRFNSEEEI 272 (483)
T ss_pred eEEEecCchhhh
Confidence 334444444443
No 277
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=21.49 E-value=43 Score=32.91 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=11.7
Q ss_pred CCCccEEEEEecCHHHHH
Q 016219 286 GKPKGFCLFVYKTVDAAK 303 (393)
Q Consensus 286 g~~kg~aFV~F~~~~~A~ 303 (393)
|.+.|-+.|.|.-..+-.
T Consensus 475 gsgdG~~~vyYdp~~S~R 492 (641)
T KOG0772|consen 475 GSGDGTAHVYYDPNESIR 492 (641)
T ss_pred ecCCCceEEEECcccccc
Confidence 445678888886655543
No 278
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=21.23 E-value=79 Score=29.75 Aligned_cols=85 Identities=26% Similarity=0.222 Sum_probs=0.0
Q ss_pred Ccchhhhhhhhhccccccccchhhhh-hhHHHHhhhhccccchhHhhhhcCCCCCCchhhhcccCCCchHHHHHHHHHHH
Q 016219 32 PIEEEEYEEEVEEEGEEEGEEEEEEE-EEEEEEEEKADQKEDEEEEEKADQNDEEDDEPILSLLEPFSKDQLVNLLREAA 110 (393)
Q Consensus 32 ~~~~e~~~e~~~e~~~e~d~~~~eee-~~~~~~~e~~~~e~~~ee~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 110 (393)
+.+.++++..---...-+++++++.+ +..+.+++.+.|.+.++-...+|+..+++++......++..-.......+.+.
T Consensus 26 e~E~ed~~~~t~q~s~~e~~~DeEyE~~~~e~eDe~DsDfs~d~~~~~sDe~sed~~~~~d~~~k~~vl~~~~rkkr~k~ 105 (390)
T KOG2897|consen 26 ESEEEDDEYSTTQGSFSEDSHDEEYEGEESEEEDEVDSDFSIDETSNESDEESEDDKEEEDEDAKRKVLRTKERKKRKKA 105 (390)
T ss_pred hhhhhhhHHhhhhccccccccchhhhhhhhhhccccccccchhhccccCcccccccccccccccccchhhhHHhhhhhhh
Q ss_pred hhchhh
Q 016219 111 ENHRDV 116 (393)
Q Consensus 111 ~~~~~~ 116 (393)
.+...+
T Consensus 106 ~~k~~~ 111 (390)
T KOG2897|consen 106 LKKRAA 111 (390)
T ss_pred hccccc
No 279
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.21 E-value=3.1e+02 Score=19.49 Aligned_cols=58 Identities=5% Similarity=0.132 Sum_probs=41.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQ-YG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 192 (393)
.-|+-.++..++..+|+..++. || .|..|+.+.-+ . ...-|||.+..-..|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 3566668999999999999987 44 46777766554 2 2335999999888877665543
No 280
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.99 E-value=1.6e+02 Score=21.44 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=20.3
Q ss_pred CeeEEeeeecCCCCCCccEEEEEecC
Q 016219 273 EIEEGPLGIDKATGKPKGFCLFVYKT 298 (393)
Q Consensus 273 ~I~~v~i~~d~~~g~~kg~aFV~F~~ 298 (393)
.|..|+|-.-...|+-+|||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 37788887655568889999999977
No 281
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.95 E-value=1.7e+02 Score=21.10 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=24.1
Q ss_pred CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCC
Q 016219 273 EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311 (393)
Q Consensus 273 ~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~ 311 (393)
.|.++-.+. ..+||-||+=.+..++..|+..+.+
T Consensus 33 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPD-----SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-T-----TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeC-----CCceEEEEEeCCHHHHHHHHhcccc
Confidence 466665532 2599999999999999999988774
No 282
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.95 E-value=1.9e+02 Score=26.83 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.4
Q ss_pred EEEEecCHHHHHHHHHcCCC
Q 016219 175 GFILFKTRSGARKALKEPQK 194 (393)
Q Consensus 175 afv~f~~~~~a~~a~~~~~~ 194 (393)
|||+|.+..+|..|++....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 79999999999999996543
Done!