Query 016219
Match_columns 393
No_of_seqs 379 out of 3423
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 1.1E-36 3.9E-41 263.4 22.0 179 126-330 9-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 4.6E-36 1.6E-40 262.9 17.8 166 129-326 14-181 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 4.4E-35 1.5E-39 246.3 19.7 163 131-324 1-165 (166)
4 2cjk_A Nuclear polyadenylated 100.0 1.7E-35 5.7E-40 249.3 15.7 164 129-326 2-166 (167)
5 2qfj_A FBP-interacting repress 100.0 2.8E-35 9.7E-40 258.6 15.6 180 130-330 28-209 (216)
6 1b7f_A Protein (SXL-lethal pro 100.0 2.4E-34 8.1E-39 242.5 20.0 162 130-323 3-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 4.4E-34 1.5E-38 240.4 20.7 162 130-323 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 1.5E-33 5.3E-38 239.0 19.0 163 129-323 2-174 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 3.7E-33 1.3E-37 241.7 15.2 181 129-328 3-196 (198)
10 1fje_B Nucleolin RBD12, protei 100.0 6.6E-33 2.3E-37 235.3 12.8 165 126-327 9-175 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 7.6E-32 2.6E-36 228.0 18.4 156 129-323 3-171 (172)
12 3smz_A Protein raver-1, ribonu 100.0 1.7E-31 5.8E-36 244.5 20.3 172 127-328 92-266 (284)
13 3tyt_A Heterogeneous nuclear r 100.0 3.4E-31 1.1E-35 229.7 18.8 188 129-323 3-204 (205)
14 3pgw_A U1-A; protein-RNA compl 100.0 8.6E-31 3E-35 239.5 22.5 191 126-324 5-281 (282)
15 2ghp_A U4/U6 snRNA-associated 100.0 2E-31 6.7E-36 245.1 17.7 172 129-327 116-292 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 1.5E-30 5E-35 230.5 20.5 191 125-325 29-227 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-30 3.7E-35 226.2 17.4 186 130-325 3-196 (198)
18 3smz_A Protein raver-1, ribonu 100.0 8.1E-30 2.8E-34 233.3 19.6 153 130-327 22-176 (284)
19 3sde_A Paraspeckle component 1 100.0 3.7E-30 1.2E-34 232.5 16.9 155 127-326 19-179 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 6E-30 2E-34 235.2 18.2 162 125-328 36-199 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.4E-24 1.2E-28 178.3 14.9 148 159-328 2-152 (158)
22 4fxv_A ELAV-like protein 1; RN 99.9 3.5E-22 1.2E-26 152.0 10.0 81 245-325 17-98 (99)
23 4f25_A Polyadenylate-binding p 99.9 7.4E-22 2.5E-26 154.8 10.4 108 130-263 5-113 (115)
24 2lxi_A RNA-binding protein 10; 99.9 6E-22 2.1E-26 148.3 7.8 81 248-328 2-85 (91)
25 2i2y_A Fusion protein consists 99.9 1E-21 3.5E-26 161.7 8.8 137 169-327 10-149 (150)
26 3pgw_S U1-70K; protein-RNA com 99.8 5.2E-21 1.8E-25 183.6 10.4 85 245-329 100-185 (437)
27 2lkz_A RNA-binding protein 5; 99.8 3.1E-21 1.1E-25 145.0 6.9 82 244-325 6-94 (95)
28 3s8s_A Histone-lysine N-methyl 99.8 1.6E-20 5.4E-25 145.6 10.4 80 246-325 5-85 (110)
29 2dgo_A Cytotoxic granule-assoc 99.8 7.9E-20 2.7E-24 143.3 14.5 89 243-331 11-100 (115)
30 2lea_A Serine/arginine-rich sp 99.8 7.5E-21 2.6E-25 153.2 8.1 123 174-329 6-130 (135)
31 2cqd_A RNA-binding region cont 99.8 1.1E-19 3.6E-24 142.8 14.4 88 243-330 13-100 (116)
32 1whw_A Hypothetical protein ri 99.8 6.9E-20 2.4E-24 139.6 12.1 84 245-328 6-90 (99)
33 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.3E-20 1.1E-24 137.8 9.7 82 246-327 5-87 (87)
34 2dgs_A DAZ-associated protein 99.8 8.2E-20 2.8E-24 139.2 12.1 84 244-328 7-91 (99)
35 2dnz_A Probable RNA-binding pr 99.8 7.4E-20 2.5E-24 138.3 11.6 83 246-328 4-87 (95)
36 1x5t_A Splicing factor 3B subu 99.8 5.3E-20 1.8E-24 139.4 10.7 84 246-329 4-89 (96)
37 2fy1_A RNA-binding motif prote 99.8 1E-19 3.6E-24 142.6 12.7 82 246-328 6-88 (116)
38 2cq0_A Eukaryotic translation 99.8 7.5E-20 2.6E-24 140.5 11.4 86 244-329 12-98 (103)
39 1x5u_A Splicing factor 3B subu 99.8 1.1E-19 3.9E-24 140.0 12.2 86 243-328 11-97 (105)
40 3md1_A Nuclear and cytoplasmic 99.8 6.9E-20 2.4E-24 134.8 10.4 80 248-327 2-82 (83)
41 4fxv_A ELAV-like protein 1; RN 99.8 8.2E-20 2.8E-24 138.8 10.9 80 128-207 17-97 (99)
42 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-19 3.8E-24 142.4 11.3 86 243-328 21-107 (115)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.2E-20 2.5E-24 140.3 9.8 86 244-329 9-95 (102)
44 2dnm_A SRP46 splicing factor; 99.8 7.3E-20 2.5E-24 140.5 9.9 85 244-328 10-95 (103)
45 3s7r_A Heterogeneous nuclear r 99.8 9.9E-20 3.4E-24 135.2 10.2 80 244-323 8-87 (87)
46 3p5t_L Cleavage and polyadenyl 99.8 1.8E-20 6.1E-25 140.2 6.1 82 248-329 2-86 (90)
47 1x5s_A Cold-inducible RNA-bind 99.8 9.3E-20 3.2E-24 139.7 10.3 85 244-328 9-94 (102)
48 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.2E-19 4.1E-24 150.3 11.7 85 244-328 36-121 (156)
49 3ns6_A Eukaryotic translation 99.8 2.8E-20 9.5E-25 141.9 7.3 81 246-326 5-93 (100)
50 2rs2_A Musashi-1, RNA-binding 99.8 1.1E-19 3.6E-24 141.0 10.7 85 244-328 22-106 (109)
51 1u6f_A Tcubp1, RNA-binding pro 99.8 3.3E-19 1.1E-23 144.7 14.0 87 242-328 37-124 (139)
52 2do4_A Squamous cell carcinoma 99.8 1.6E-19 5.3E-24 137.9 11.3 85 243-328 13-98 (100)
53 1p27_B RNA-binding protein 8A; 99.8 1.2E-19 4.2E-24 140.1 10.4 86 243-328 19-105 (106)
54 2cph_A RNA binding motif prote 99.8 2.4E-19 8.3E-24 138.6 11.8 86 243-328 11-99 (107)
55 2cpf_A RNA binding motif prote 99.8 1.4E-19 4.7E-24 137.7 10.2 84 246-329 4-91 (98)
56 3ex7_B RNA-binding protein 8A; 99.8 1.1E-19 3.6E-24 145.0 10.0 87 243-329 18-105 (126)
57 2x1f_A MRNA 3'-END-processing 99.8 1.3E-19 4.6E-24 137.2 10.0 81 247-327 2-83 (96)
58 2dng_A Eukaryotic translation 99.8 3.2E-19 1.1E-23 136.9 12.1 83 244-328 12-95 (103)
59 2m2b_A RNA-binding protein 10; 99.8 7.1E-20 2.4E-24 147.0 8.5 85 243-328 19-110 (131)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-19 4.2E-24 134.1 9.1 80 245-324 5-85 (85)
61 1s79_A Lupus LA protein; RRM, 99.8 1.1E-19 3.8E-24 138.9 9.1 79 245-325 9-88 (103)
62 2dhg_A TRNA selenocysteine ass 99.8 2E-19 6.7E-24 138.4 10.5 85 244-329 6-93 (104)
63 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-19 1.2E-23 137.3 11.6 85 244-329 12-100 (105)
64 2e5h_A Zinc finger CCHC-type a 99.8 2.2E-19 7.5E-24 135.4 10.3 82 243-324 12-94 (94)
65 2cqc_A Arginine/serine-rich sp 99.8 2.3E-19 8E-24 135.5 10.5 83 243-325 11-94 (95)
66 4f25_A Polyadenylate-binding p 99.8 1.4E-19 4.7E-24 141.8 9.5 79 247-327 5-84 (115)
67 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-19 7.6E-24 138.6 10.5 85 243-327 9-97 (106)
68 1wi8_A EIF-4B, eukaryotic tran 99.8 3.8E-19 1.3E-23 136.8 11.7 82 245-328 13-96 (104)
69 2jrs_A RNA-binding protein 39; 99.8 2.1E-19 7E-24 139.0 10.1 85 243-327 22-107 (108)
70 1oo0_B CG8781-PA, drosophila Y 99.8 2.3E-19 7.9E-24 139.5 10.5 86 243-328 22-108 (110)
71 2cpe_A RNA-binding protein EWS 99.8 2.5E-19 8.6E-24 140.0 10.7 86 243-328 11-105 (113)
72 2div_A TRNA selenocysteine ass 99.8 2.3E-19 8E-24 136.7 10.1 84 244-327 6-95 (99)
73 1x4h_A RNA-binding protein 28; 99.8 4.1E-19 1.4E-23 138.3 11.6 87 243-329 11-104 (111)
74 2d9p_A Polyadenylate-binding p 99.8 3.5E-19 1.2E-23 136.7 10.9 84 243-328 11-95 (103)
75 2la6_A RNA-binding protein FUS 99.8 2.9E-19 9.8E-24 136.1 10.1 82 243-324 9-99 (99)
76 2dh8_A DAZ-associated protein 99.8 2.3E-19 7.9E-24 138.2 9.6 85 243-328 12-97 (105)
77 2lxi_A RNA-binding protein 10; 99.8 2E-19 6.7E-24 134.6 8.6 81 130-210 1-84 (91)
78 2cqg_A TDP-43, TAR DNA-binding 99.8 8.3E-19 2.8E-23 134.6 12.3 86 243-329 11-96 (103)
79 1x4b_A Heterogeneous nuclear r 99.8 3.5E-19 1.2E-23 139.8 10.3 85 244-328 24-108 (116)
80 3q2s_C Cleavage and polyadenyl 99.8 1.2E-19 4.3E-24 159.4 8.4 79 247-325 68-149 (229)
81 3ucg_A Polyadenylate-binding p 99.8 4.6E-19 1.6E-23 132.2 10.1 80 246-326 5-85 (89)
82 2kxn_B Transformer-2 protein h 99.8 2.6E-19 8.8E-24 143.0 9.3 85 243-327 42-127 (129)
83 2do0_A HnRNP M, heterogeneous 99.8 1.4E-18 4.8E-23 135.9 13.2 82 244-326 12-94 (114)
84 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.2E-19 4.1E-24 131.4 6.4 77 248-324 1-77 (77)
85 2mss_A Protein (musashi1); RNA 99.8 2.3E-19 7.8E-24 129.3 7.7 74 249-323 1-75 (75)
86 2cq3_A RNA-binding protein 9; 99.8 1.4E-18 4.7E-23 133.4 12.5 85 243-329 11-96 (103)
87 1sjq_A Polypyrimidine tract-bi 99.8 2.5E-19 8.5E-24 136.0 8.1 80 244-329 13-95 (105)
88 3s8s_A Histone-lysine N-methyl 99.8 8.7E-19 3E-23 135.7 11.2 80 128-207 4-84 (110)
89 1p1t_A Cleavage stimulation fa 99.8 2.7E-19 9.4E-24 137.6 8.2 83 245-327 6-89 (104)
90 2dis_A Unnamed protein product 99.8 1.1E-18 3.8E-23 135.4 11.6 84 246-329 7-95 (109)
91 2dgx_A KIAA0430 protein; RRM d 99.8 6.3E-19 2.2E-23 133.4 9.8 81 245-328 7-92 (96)
92 2lkz_A RNA-binding protein 5; 99.8 3.2E-19 1.1E-23 134.0 7.8 80 128-207 7-93 (95)
93 2khc_A Testis-specific RNP-typ 99.8 1.2E-18 4E-23 137.3 11.3 82 243-324 36-118 (118)
94 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.6E-18 5.6E-23 133.0 11.7 83 244-328 12-95 (103)
95 2cqp_A RNA-binding protein 12; 99.8 5.5E-19 1.9E-23 134.3 9.0 83 244-326 12-95 (98)
96 3n9u_C Cleavage and polyadenyl 99.8 6.1E-19 2.1E-23 145.4 9.9 80 246-325 54-136 (156)
97 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.7E-23 130.2 11.0 81 245-328 8-89 (91)
98 2ywk_A Putative RNA-binding pr 99.8 6.7E-19 2.3E-23 133.0 9.3 82 243-325 12-94 (95)
99 3s7r_A Heterogeneous nuclear r 99.8 1.8E-18 6.2E-23 128.3 11.4 82 125-206 6-87 (87)
100 2jwn_A Embryonic polyadenylate 99.8 1.3E-18 4.3E-23 138.3 11.1 82 245-327 34-116 (124)
101 4a8x_A RNA-binding protein wit 99.8 6.4E-19 2.2E-23 131.1 8.8 80 247-326 4-85 (88)
102 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.2E-19 1.1E-23 136.1 6.9 83 243-327 15-99 (100)
103 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-18 4.2E-23 130.7 10.0 82 245-328 6-88 (92)
104 3ulh_A THO complex subunit 4; 99.8 1.2E-18 4.3E-23 134.6 10.2 81 243-324 25-106 (107)
105 2hgn_A Heterogeneous nuclear r 99.8 2E-19 6.9E-24 144.7 5.7 79 245-326 44-123 (139)
106 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-18 4E-23 133.2 9.5 80 244-326 12-92 (102)
107 1x4d_A Matrin 3; structural ge 99.8 8.7E-19 3E-23 133.0 8.4 77 245-327 13-93 (102)
108 3r27_A HnRNP L, heterogeneous 99.8 1.3E-18 4.6E-23 130.6 9.3 78 243-326 17-97 (100)
109 1iqt_A AUF1, heterogeneous nuc 99.8 3.8E-19 1.3E-23 128.1 6.0 75 249-323 1-75 (75)
110 2cq1_A PTB-like protein L; RRM 99.8 2.1E-18 7.3E-23 131.0 10.4 80 243-328 11-93 (101)
111 2ek1_A RNA-binding protein 12; 99.8 5.1E-19 1.8E-23 133.7 6.8 80 246-325 14-94 (95)
112 2ki2_A SS-DNA binding protein 99.8 2.2E-19 7.6E-24 134.2 4.7 81 248-329 2-83 (90)
113 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.5E-18 5.2E-23 144.9 10.3 86 244-329 69-155 (165)
114 1x4a_A Splicing factor, argini 99.8 3.9E-18 1.3E-22 132.3 11.8 83 243-328 18-101 (109)
115 2ad9_A Polypyrimidine tract-bi 99.8 2.1E-18 7.1E-23 134.3 10.2 80 244-329 28-110 (119)
116 2wbr_A GW182, gawky, LD47780P; 99.8 1E-18 3.5E-23 126.3 7.5 73 246-324 6-79 (89)
117 2cpy_A RNA-binding protein 12; 99.8 3.1E-19 1.1E-23 139.6 5.0 82 244-327 12-95 (114)
118 2cq4_A RNA binding motif prote 99.8 8.4E-19 2.9E-23 137.2 7.5 83 244-327 22-105 (114)
119 1wg5_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 130.9 11.1 80 245-325 13-93 (104)
120 1x4e_A RNA binding motif, sing 99.8 2.5E-19 8.6E-24 132.4 4.1 79 246-324 4-83 (85)
121 1wex_A Hypothetical protein (r 99.8 4.7E-18 1.6E-22 129.8 11.4 79 244-328 12-93 (104)
122 2cpi_A CCR4-NOT transcription 99.8 1.4E-18 4.8E-23 135.2 8.5 83 245-327 13-102 (111)
123 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.4E-18 1.2E-22 138.9 11.0 81 243-323 59-140 (140)
124 2rs2_A Musashi-1, RNA-binding 99.8 4.2E-18 1.4E-22 131.9 10.9 88 124-211 19-106 (109)
125 2kt5_A RNA and export factor-b 99.8 5.7E-18 1.9E-22 134.5 11.8 86 243-329 31-117 (124)
126 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.9E-18 1.3E-22 126.5 10.2 82 128-209 4-86 (87)
127 1s79_A Lupus LA protein; RRM, 99.8 3.3E-18 1.1E-22 130.7 10.0 80 127-207 8-87 (103)
128 2fc9_A NCL protein; structure 99.8 4.3E-18 1.5E-22 130.1 10.3 82 243-328 11-93 (101)
129 2nlw_A Eukaryotic translation 99.8 2.5E-18 8.6E-23 132.3 9.0 81 245-327 13-101 (105)
130 1whw_A Hypothetical protein ri 99.8 1.1E-17 3.8E-22 127.3 12.4 85 127-211 5-90 (99)
131 2dgs_A DAZ-associated protein 99.8 1.4E-17 4.9E-22 126.7 12.9 86 126-211 6-91 (99)
132 2cqd_A RNA-binding region cont 99.8 1.3E-17 4.6E-22 130.7 13.1 86 125-210 12-97 (116)
133 3p5t_L Cleavage and polyadenyl 99.7 1.2E-18 4.3E-23 130.1 6.6 81 131-211 2-85 (90)
134 2hvz_A Splicing factor, argini 99.7 4.9E-18 1.7E-22 129.8 10.0 76 248-328 1-77 (101)
135 3ns6_A Eukaryotic translation 99.7 1.7E-18 5.8E-23 131.9 7.2 80 128-207 4-91 (100)
136 1x5o_A RNA binding motif, sing 99.7 5.1E-18 1.7E-22 132.7 10.1 83 243-326 21-112 (114)
137 1x5t_A Splicing factor 3B subu 99.7 1.1E-17 3.9E-22 126.4 11.7 84 128-211 3-88 (96)
138 2dnq_A RNA-binding protein 4B; 99.7 8.6E-18 2.9E-22 125.5 10.8 77 245-329 6-83 (90)
139 2cq0_A Eukaryotic translation 99.7 1E-17 3.6E-22 128.4 11.5 86 126-211 11-97 (103)
140 2hvz_A Splicing factor, argini 99.7 4.5E-18 1.5E-22 130.0 9.4 75 131-210 1-76 (101)
141 2dnz_A Probable RNA-binding pr 99.7 1.4E-17 4.8E-22 125.7 11.9 84 128-211 3-87 (95)
142 2dgu_A Heterogeneous nuclear r 99.7 9.7E-18 3.3E-22 128.6 11.2 79 245-331 9-88 (103)
143 2cpx_A Hypothetical protein FL 99.7 2.2E-18 7.5E-23 135.1 7.6 85 244-328 22-107 (115)
144 3md1_A Nuclear and cytoplasmic 99.7 1E-17 3.6E-22 123.0 10.8 79 131-209 2-81 (83)
145 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-17 8E-22 129.1 13.5 88 125-212 10-98 (115)
146 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.9E-18 2.7E-22 124.3 10.1 80 127-206 4-84 (85)
147 2a3j_A U1 small nuclear ribonu 99.7 5E-18 1.7E-22 134.5 9.6 81 244-327 26-111 (127)
148 1fj7_A Nucleolin RBD1, protein 99.7 8.7E-19 3E-23 134.0 5.0 81 245-327 15-96 (101)
149 2err_A Ataxin-2-binding protei 99.7 3.5E-18 1.2E-22 132.4 8.4 82 243-326 25-107 (109)
150 2krb_A Eukaryotic translation 99.7 2.1E-18 7.3E-23 126.1 6.7 71 248-320 2-80 (81)
151 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-17 3.9E-22 130.9 11.3 87 125-211 20-107 (115)
152 2db1_A Heterogeneous nuclear r 99.7 3.9E-18 1.3E-22 134.1 8.5 80 244-325 14-97 (118)
153 2hgl_A HNRPF protein, heteroge 99.7 2.9E-18 9.9E-23 137.5 7.7 79 245-325 42-124 (136)
154 2fc8_A NCL protein; structure 99.7 8.7E-18 3E-22 128.6 10.1 82 244-328 12-94 (102)
155 1x4c_A Splicing factor, argini 99.7 2.2E-17 7.7E-22 127.6 12.5 77 245-328 13-95 (108)
156 1x5u_A Splicing factor 3B subu 99.7 2.1E-17 7.1E-22 127.2 12.2 87 125-211 10-97 (105)
157 1x4f_A Matrin 3; structural ge 99.7 4E-18 1.4E-22 131.2 8.0 79 244-328 22-104 (112)
158 2dnm_A SRP46 splicing factor; 99.7 1.2E-17 4.1E-22 128.1 10.7 86 126-211 9-95 (103)
159 2jrs_A RNA-binding protein 39; 99.7 1.1E-17 3.7E-22 129.3 10.3 86 124-209 20-106 (108)
160 1wel_A RNA-binding protein 12; 99.7 2.6E-18 9.1E-23 136.4 7.0 82 244-326 22-104 (124)
161 2dnn_A RNA-binding protein 12; 99.7 6.4E-18 2.2E-22 130.2 9.0 77 246-325 15-92 (109)
162 1x4h_A RNA-binding protein 28; 99.7 1.7E-17 6E-22 129.0 11.5 87 125-211 10-103 (111)
163 2lcw_A RNA-binding protein FUS 99.6 1.7E-19 5.9E-24 141.6 0.0 84 245-328 5-97 (116)
164 3lqv_A PRE-mRNA branch site pr 99.7 3.9E-18 1.3E-22 133.6 7.8 104 127-273 5-109 (115)
165 1x5s_A Cold-inducible RNA-bind 99.7 1.5E-17 5.1E-22 127.3 10.9 86 126-211 8-94 (102)
166 1x4g_A Nucleolysin TIAR; struc 99.7 1E-17 3.4E-22 129.9 9.9 81 244-330 22-103 (109)
167 2cpf_A RNA binding motif prote 99.7 1.7E-17 5.8E-22 126.0 11.0 84 128-211 3-90 (98)
168 1p27_B RNA-binding protein 8A; 99.7 1.5E-17 5.1E-22 128.3 10.8 84 126-209 19-103 (106)
169 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.4E-18 1.8E-22 122.7 7.8 76 131-206 1-76 (77)
170 2div_A TRNA selenocysteine ass 99.7 2E-17 7E-22 125.8 11.4 84 126-209 5-94 (99)
171 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4E-22 127.9 10.1 86 126-211 8-94 (102)
172 2dgt_A RNA-binding protein 30; 99.7 1.9E-17 6.5E-22 124.1 10.9 77 244-328 7-84 (92)
173 2cqc_A Arginine/serine-rich sp 99.7 1.5E-17 5E-22 125.6 10.3 84 125-208 10-94 (95)
174 2do4_A Squamous cell carcinoma 99.7 2.3E-17 7.7E-22 125.8 11.5 84 126-210 13-97 (100)
175 2xs2_A Deleted in azoospermia- 99.7 4.2E-18 1.4E-22 130.4 7.3 83 244-328 6-88 (102)
176 2x1f_A MRNA 3'-END-processing 99.7 1.5E-17 5.2E-22 125.8 10.3 81 130-210 2-83 (96)
177 1why_A Hypothetical protein ri 99.7 1.6E-17 5.3E-22 126.0 10.3 79 244-328 14-95 (97)
178 2e5h_A Zinc finger CCHC-type a 99.7 1.7E-17 6E-22 124.9 10.3 82 125-206 11-93 (94)
179 2dnh_A Bruno-like 5, RNA bindi 99.7 3.3E-17 1.1E-21 126.1 12.1 86 126-212 11-100 (105)
180 2cph_A RNA binding motif prote 99.7 2.9E-17 9.8E-22 126.9 11.6 87 125-211 10-99 (107)
181 2jvr_A Nucleolar protein 3; RN 99.7 6.8E-18 2.3E-22 130.3 8.0 78 246-327 27-106 (111)
182 2la6_A RNA-binding protein FUS 99.7 2.3E-17 7.8E-22 125.5 10.8 82 125-206 8-98 (99)
183 2fy1_A RNA-binding motif prote 99.7 4.3E-17 1.5E-21 127.6 12.5 83 128-211 5-88 (116)
184 2cpj_A Non-POU domain-containi 99.7 1.9E-17 6.5E-22 126.0 9.9 78 244-327 12-90 (99)
185 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-17 7.2E-22 121.9 9.9 75 244-324 9-85 (85)
186 2dnp_A RNA-binding protein 14; 99.7 2E-17 6.8E-22 123.5 9.8 76 244-327 6-82 (90)
187 3ucg_A Polyadenylate-binding p 99.7 3.6E-17 1.2E-21 121.8 11.2 78 130-208 6-84 (89)
188 2kvi_A Nuclear polyadenylated 99.7 9.3E-18 3.2E-22 126.9 8.1 79 244-330 7-87 (96)
189 2lmi_A GRSF-1, G-rich sequence 99.7 3.5E-18 1.2E-22 131.9 5.8 80 244-325 8-91 (107)
190 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-17 8.5E-22 127.0 10.6 87 125-211 8-98 (106)
191 2cqg_A TDP-43, TAR DNA-binding 99.7 6.1E-17 2.1E-21 124.1 12.7 86 126-212 11-96 (103)
192 2hgm_A HNRPF protein, heteroge 99.7 6.8E-18 2.3E-22 133.1 7.4 79 245-325 40-120 (126)
193 2j8a_A Histone-lysine N-methyl 99.7 8.1E-18 2.8E-22 129.8 7.4 77 248-324 3-94 (136)
194 2mss_A Protein (musashi1); RNA 99.7 1.3E-17 4.6E-22 119.9 8.0 75 132-206 1-75 (75)
195 3n9u_C Cleavage and polyadenyl 99.7 3.1E-17 1.1E-21 135.2 11.2 79 129-207 54-135 (156)
196 2cpd_A Apobec-1 stimulating pr 99.7 4.9E-17 1.7E-21 123.7 11.5 78 243-328 11-91 (99)
197 2e5j_A Methenyltetrahydrofolat 99.7 2.6E-17 8.9E-22 124.7 9.8 78 245-327 17-95 (97)
198 1iqt_A AUF1, heterogeneous nuc 99.7 9.1E-18 3.1E-22 120.8 6.9 75 132-206 1-75 (75)
199 2dng_A Eukaryotic translation 99.7 7.9E-17 2.7E-21 123.5 12.5 84 126-211 11-95 (103)
200 1oo0_B CG8781-PA, drosophila Y 99.7 2.8E-17 9.7E-22 127.6 10.2 85 125-209 21-106 (110)
201 2ywk_A Putative RNA-binding pr 99.7 3.1E-17 1.1E-21 123.7 10.1 81 126-207 12-93 (95)
202 2d9p_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 124.7 11.1 85 125-211 10-95 (103)
203 2cpe_A RNA-binding protein EWS 99.7 4.2E-17 1.4E-21 127.3 10.7 86 126-211 11-105 (113)
204 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.4E-17 1.2E-21 136.8 10.8 87 125-211 67-154 (165)
205 2dh8_A DAZ-associated protein 99.7 2.7E-17 9.1E-22 126.6 9.3 86 126-211 12-97 (105)
206 2xnq_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 123.8 9.7 77 243-327 18-96 (97)
207 1u6f_A Tcubp1, RNA-binding pro 99.7 9.2E-17 3.1E-21 130.2 12.8 88 125-212 37-125 (139)
208 1p1t_A Cleavage stimulation fa 99.7 4E-17 1.4E-21 125.4 9.9 79 130-208 8-87 (104)
209 4a8x_A RNA-binding protein wit 99.7 3.9E-17 1.3E-21 121.3 9.5 80 129-208 3-84 (88)
210 1nu4_A U1A RNA binding domain; 99.7 1.1E-17 3.8E-22 126.8 6.6 80 245-327 6-90 (97)
211 1whx_A Hypothetical protein ri 99.7 3.3E-17 1.1E-21 127.2 9.3 76 246-327 9-85 (111)
212 2jvo_A Nucleolar protein 3; nu 99.7 3.1E-17 1E-21 126.7 9.0 78 243-328 27-105 (108)
213 1wi8_A EIF-4B, eukaryotic tran 99.7 7.1E-17 2.4E-21 123.9 11.0 84 126-211 11-96 (104)
214 3q2s_C Cleavage and polyadenyl 99.7 3.6E-17 1.2E-21 143.6 10.5 79 129-207 67-148 (229)
215 1x4b_A Heterogeneous nuclear r 99.7 6.9E-17 2.4E-21 126.6 11.0 83 130-212 27-109 (116)
216 2khc_A Testis-specific RNP-typ 99.7 3.6E-17 1.2E-21 128.7 9.4 82 125-206 35-117 (118)
217 1wez_A HnRNP H', FTP-3, hetero 99.7 5.7E-17 1.9E-21 123.8 10.2 82 126-209 11-92 (102)
218 3lqv_A PRE-mRNA branch site pr 99.7 3.3E-17 1.1E-21 128.3 9.1 80 245-327 6-86 (115)
219 1fjc_A Nucleolin RBD2, protein 99.7 2.1E-17 7.2E-22 125.0 7.7 79 244-327 13-92 (96)
220 1wg5_A Heterogeneous nuclear r 99.7 8.6E-17 2.9E-21 123.4 11.2 83 127-210 12-95 (104)
221 2dhg_A TRNA selenocysteine ass 99.7 7.2E-17 2.5E-21 123.9 10.7 84 127-211 6-92 (104)
222 2dha_A FLJ20171 protein; RRM d 99.7 1.3E-17 4.5E-22 131.2 6.7 80 245-325 21-104 (123)
223 1x4e_A RNA binding motif, sing 99.7 6.6E-18 2.3E-22 124.7 4.7 79 128-206 3-82 (85)
224 3ulh_A THO complex subunit 4; 99.7 7.8E-17 2.7E-21 124.4 10.8 82 125-207 24-106 (107)
225 2cqp_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 123.6 9.4 82 127-208 12-94 (98)
226 2la4_A Nuclear and cytoplasmic 99.7 2.2E-17 7.4E-22 126.1 7.6 75 245-325 25-100 (101)
227 1sjq_A Polypyrimidine tract-bi 99.7 3.5E-17 1.2E-21 124.1 8.6 80 126-211 12-94 (105)
228 4f02_A Polyadenylate-binding p 99.7 4.3E-17 1.5E-21 142.1 10.2 82 245-326 13-95 (213)
229 2dgw_A Probable RNA-binding pr 99.7 1.7E-16 5.9E-21 118.6 12.0 82 126-210 6-88 (91)
230 3d2w_A TAR DNA-binding protein 99.7 4E-17 1.4E-21 121.4 8.3 78 244-327 8-85 (89)
231 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.7E-16 5.8E-21 121.6 12.1 85 125-211 10-95 (103)
232 2cpy_A RNA-binding protein 12; 99.7 4.4E-17 1.5E-21 127.2 8.9 81 126-207 11-92 (114)
233 2kxn_B Transformer-2 protein h 99.7 4.1E-17 1.4E-21 130.1 8.8 85 125-209 41-126 (129)
234 3ex7_B RNA-binding protein 8A; 99.7 7.2E-17 2.4E-21 128.5 10.1 87 125-211 17-104 (126)
235 2cq3_A RNA-binding protein 9; 99.7 2.1E-16 7E-21 121.1 12.3 87 124-212 9-96 (103)
236 2dis_A Unnamed protein product 99.7 1.4E-16 4.8E-21 123.4 11.4 85 127-211 5-94 (109)
237 2ek1_A RNA-binding protein 12; 99.7 2.7E-17 9.1E-22 124.2 7.1 80 128-207 13-93 (95)
238 2do0_A HnRNP M, heterogeneous 99.7 2.2E-16 7.6E-21 123.3 12.6 83 126-209 11-94 (114)
239 1wf1_A RNA-binding protein RAL 99.7 7.9E-17 2.7E-21 125.0 9.9 74 246-327 26-101 (110)
240 2ki2_A SS-DNA binding protein 99.7 1.7E-17 5.7E-22 123.9 5.8 80 131-211 2-82 (90)
241 2e5g_A U6 snRNA-specific termi 99.7 1.2E-16 3.9E-21 120.3 10.3 76 246-327 7-83 (94)
242 2dgx_A KIAA0430 protein; RRM d 99.7 1.2E-16 4E-21 120.8 10.4 80 128-210 7-91 (96)
243 2m2b_A RNA-binding protein 10; 99.7 2.6E-17 8.9E-22 131.9 6.8 83 126-209 19-108 (131)
244 2f3j_A RNA and export factor b 99.7 6.6E-17 2.3E-21 136.2 9.6 83 243-326 84-167 (177)
245 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-16 5.4E-21 119.1 10.6 82 127-210 5-87 (92)
246 2jwn_A Embryonic polyadenylate 99.7 2.1E-16 7.1E-21 125.4 11.8 79 130-209 36-115 (124)
247 2cq2_A Hypothetical protein LO 99.7 7.7E-17 2.6E-21 124.0 8.9 78 245-328 23-108 (114)
248 2cq4_A RNA binding motif prote 99.7 7.3E-17 2.5E-21 126.1 8.7 77 130-207 25-102 (114)
249 2krb_A Eukaryotic translation 99.7 5.4E-17 1.8E-21 118.6 7.4 72 130-203 1-80 (81)
250 2nlw_A Eukaryotic translation 99.7 9.2E-17 3.1E-21 123.5 9.0 80 126-207 11-98 (105)
251 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.3E-17 1.5E-21 124.2 7.0 81 126-208 15-97 (100)
252 3r27_A HnRNP L, heterogeneous 99.7 1.4E-16 4.9E-21 119.5 9.6 77 127-209 18-97 (100)
253 2hgl_A HNRPF protein, heteroge 99.7 1.1E-16 3.8E-21 128.2 9.5 81 125-207 39-123 (136)
254 2kt5_A RNA and export factor-b 99.7 2.1E-16 7.3E-21 125.4 11.0 86 126-212 31-117 (124)
255 2kn4_A Immunoglobulin G-bindin 99.7 2.3E-16 7.9E-21 130.8 11.6 83 127-209 67-150 (158)
256 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-16 4.3E-21 115.4 8.5 73 129-207 6-79 (89)
257 1x5p_A Negative elongation fac 99.7 4.6E-16 1.6E-20 117.8 12.2 76 245-328 13-89 (97)
258 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.9E-16 1.3E-20 129.1 12.8 85 126-210 35-120 (156)
259 2lea_A Serine/arginine-rich sp 99.7 9.1E-17 3.1E-21 129.2 8.6 86 125-210 42-128 (135)
260 3egn_A RNA-binding protein 40; 99.7 2.4E-17 8.2E-22 134.3 5.2 84 244-327 42-131 (143)
261 2db1_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 125.1 9.3 80 127-207 14-96 (118)
262 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.7E-16 5.9E-21 128.7 10.3 82 125-206 58-140 (140)
263 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.4E-21 136.1 11.0 85 243-327 9-93 (196)
264 2hgm_A HNRPF protein, heteroge 99.7 1.1E-16 3.7E-21 126.2 8.5 80 126-207 38-119 (126)
265 1b7f_A Protein (SXL-lethal pro 99.7 1.6E-16 5.5E-21 132.9 10.1 81 247-327 3-84 (168)
266 1fxl_A Paraneoplastic encephal 99.7 2E-16 6.8E-21 132.1 10.4 81 247-327 2-83 (167)
267 1wf0_A TDP-43, TAR DNA-binding 99.7 7.6E-17 2.6E-21 119.8 6.9 77 246-328 4-80 (88)
268 2ad9_A Polypyrimidine tract-bi 99.7 1.6E-16 5.4E-21 123.6 8.9 80 127-212 28-110 (119)
269 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.3E-21 119.9 7.8 77 245-328 6-85 (93)
270 2dnl_A Cytoplasmic polyadenyla 99.7 1.4E-16 4.6E-21 124.5 8.0 77 246-324 7-86 (114)
271 2err_A Ataxin-2-binding protei 99.7 2.8E-16 9.5E-21 121.6 9.6 86 122-209 21-107 (109)
272 2dha_A FLJ20171 protein; RRM d 99.7 1.5E-16 5E-21 125.2 8.1 79 128-207 21-103 (123)
273 2diu_A KIAA0430 protein; struc 99.7 2.4E-16 8.2E-21 114.9 8.5 71 249-329 11-87 (96)
274 2voo_A Lupus LA protein; RNA-b 99.7 2.8E-16 9.5E-21 134.3 10.5 79 246-325 108-186 (193)
275 2dnn_A RNA-binding protein 12; 99.7 2.5E-16 8.6E-21 121.2 9.1 76 130-207 16-91 (109)
276 2xs2_A Deleted in azoospermia- 99.7 1.6E-16 5.6E-21 121.4 7.9 81 128-210 7-87 (102)
277 1sjr_A Polypyrimidine tract-bi 99.7 6.8E-16 2.3E-20 126.1 12.0 76 248-327 47-125 (164)
278 1x4d_A Matrin 3; structural ge 99.7 1.6E-16 5.5E-21 120.4 7.4 77 128-210 13-93 (102)
279 2e44_A Insulin-like growth fac 99.7 2.4E-16 8.2E-21 119.1 8.4 77 246-326 14-92 (96)
280 1wex_A Hypothetical protein (r 99.7 3.9E-16 1.3E-20 119.2 9.6 79 127-211 12-93 (104)
281 2a3j_A U1 small nuclear ribonu 99.7 5.5E-16 1.9E-20 122.7 10.7 80 127-209 26-110 (127)
282 1x4a_A Splicing factor, argini 99.7 8.5E-16 2.9E-20 119.0 11.6 83 125-210 17-100 (109)
283 2cq1_A PTB-like protein L; RRM 99.7 3.2E-16 1.1E-20 118.9 8.9 80 127-212 12-94 (101)
284 1wel_A RNA-binding protein 12; 99.7 1.8E-16 6.1E-21 125.8 7.8 80 127-207 22-102 (124)
285 2lmi_A GRSF-1, G-rich sequence 99.7 1.5E-16 5.2E-21 122.7 6.9 81 126-207 7-90 (107)
286 1x5o_A RNA binding motif, sing 99.6 5.7E-16 1.9E-20 121.0 10.1 81 126-207 21-110 (114)
287 2cpi_A CCR4-NOT transcription 99.6 3E-16 1E-20 121.8 8.4 84 127-210 12-102 (111)
288 1wg1_A KIAA1579 protein, homol 99.6 2E-16 6.8E-21 117.5 7.0 74 246-326 4-78 (88)
289 2fc9_A NCL protein; structure 99.6 8.6E-16 2.9E-20 117.2 10.5 82 126-211 11-93 (101)
290 3zzy_A Polypyrimidine tract-bi 99.6 7.3E-16 2.5E-20 121.3 10.3 75 248-327 29-107 (130)
291 2j8a_A Histone-lysine N-methyl 99.6 4.7E-16 1.6E-20 120.0 8.9 77 131-207 3-94 (136)
292 2pe8_A Splicing factor 45; RRM 99.6 7.4E-16 2.5E-20 117.8 9.9 81 245-325 6-93 (105)
293 2cpx_A Hypothetical protein FL 99.6 2.7E-16 9.3E-21 123.0 7.5 86 127-212 22-108 (115)
294 2jvr_A Nucleolar protein 3; RN 99.6 5.8E-16 2E-20 119.4 9.0 81 125-209 23-105 (111)
295 2dnq_A RNA-binding protein 4B; 99.6 1.5E-15 5E-20 113.3 10.9 78 126-211 4-82 (90)
296 1fj7_A Nucleolin RBD1, protein 99.6 9.8E-17 3.3E-21 122.5 4.5 81 127-209 14-95 (101)
297 3beg_B Splicing factor, argini 99.6 3.7E-16 1.3E-20 122.1 7.8 73 246-325 15-93 (115)
298 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-15 4.7E-20 117.8 10.4 80 126-211 21-101 (109)
299 1x4c_A Splicing factor, argini 99.6 2.9E-15 9.9E-20 115.7 12.2 78 127-211 12-95 (108)
300 2hgn_A Heterogeneous nuclear r 99.6 2E-16 6.9E-21 127.1 5.7 83 126-210 42-124 (139)
301 2ytc_A PRE-mRNA-splicing facto 99.6 1.9E-15 6.4E-20 111.4 10.4 76 125-206 7-84 (85)
302 2hzc_A Splicing factor U2AF 65 99.6 8.2E-16 2.8E-20 113.8 8.3 71 245-322 4-86 (87)
303 3md3_A Nuclear and cytoplasmic 99.6 1.1E-15 3.7E-20 127.5 9.8 79 248-327 1-80 (166)
304 1x4f_A Matrin 3; structural ge 99.6 4.9E-16 1.7E-20 119.5 7.0 78 127-210 22-103 (112)
305 1why_A Hypothetical protein ri 99.6 2E-15 6.8E-20 114.2 10.2 79 126-210 13-94 (97)
306 2cjk_A Nuclear polyadenylated 99.6 7.1E-16 2.4E-20 128.9 8.4 80 246-326 2-81 (167)
307 1nu4_A U1A RNA binding domain; 99.6 7.4E-16 2.5E-20 116.6 7.3 80 127-209 5-89 (97)
308 2fc8_A NCL protein; structure 99.6 2.5E-15 8.5E-20 114.8 10.1 84 125-211 10-94 (102)
309 2e5i_A Heterogeneous nuclear r 99.6 3.1E-15 1E-19 117.3 10.7 74 248-327 26-103 (124)
310 2lcw_A RNA-binding protein FUS 99.4 4.2E-17 1.4E-21 127.9 0.0 85 127-211 4-97 (116)
311 1whx_A Hypothetical protein ri 99.6 1.3E-15 4.5E-20 118.1 8.5 77 129-211 9-86 (111)
312 2e5j_A Methenyltetrahydrofolat 99.6 2.4E-15 8.2E-20 113.8 9.7 79 126-209 15-94 (97)
313 2dnl_A Cytoplasmic polyadenyla 99.6 9.3E-16 3.2E-20 119.7 7.5 78 127-206 5-85 (114)
314 2cpj_A Non-POU domain-containi 99.6 2.8E-15 9.5E-20 113.9 9.9 79 126-210 11-90 (99)
315 2la4_A Nuclear and cytoplasmic 99.6 1.2E-15 4E-20 116.4 7.9 76 126-207 23-99 (101)
316 2dnp_A RNA-binding protein 14; 99.6 3.6E-15 1.2E-19 111.1 10.4 78 126-211 5-83 (90)
317 2qfj_A FBP-interacting repress 99.6 1.3E-15 4.3E-20 132.9 8.8 83 244-326 25-108 (216)
318 2jvo_A Nucleolar protein 3; nu 99.6 2.2E-15 7.5E-20 116.2 9.1 81 122-210 23-104 (108)
319 2xnq_A Nuclear polyadenylated 99.6 4.3E-15 1.5E-19 112.3 10.4 77 124-208 16-94 (97)
320 2bz2_A Negative elongation fac 99.6 1.8E-15 6.1E-20 119.1 8.5 76 245-328 37-113 (121)
321 2dgt_A RNA-binding protein 30; 99.6 6.2E-15 2.1E-19 110.3 11.1 78 126-211 6-84 (92)
322 2f3j_A RNA and export factor b 99.6 3E-15 1E-19 126.0 10.1 80 128-208 86-166 (177)
323 3tyt_A Heterogeneous nuclear r 99.6 1.8E-15 6.3E-20 130.6 9.0 77 246-327 3-81 (205)
324 2voo_A Lupus LA protein; RNA-b 99.6 4.5E-15 1.5E-19 126.8 11.2 77 130-207 109-185 (193)
325 1fjc_A Nucleolin RBD2, protein 99.6 2E-15 7E-20 113.9 8.0 79 127-210 13-92 (96)
326 2dgu_A Heterogeneous nuclear r 99.6 6.8E-15 2.3E-19 112.6 10.9 78 127-212 8-86 (103)
327 3pgw_A U1-A; protein-RNA compl 99.6 1.5E-14 5E-19 131.6 15.1 81 244-327 6-91 (282)
328 3pgw_S U1-70K; protein-RNA com 99.6 6.4E-15 2.2E-19 141.4 13.2 83 128-210 100-183 (437)
329 3d2w_A TAR DNA-binding protein 99.6 3.3E-15 1.1E-19 110.9 8.4 77 127-209 8-84 (89)
330 3u1l_A PRE-mRNA-splicing facto 99.6 1.8E-15 6.1E-20 132.1 8.1 81 244-330 131-233 (240)
331 2e5g_A U6 snRNA-specific termi 99.6 9.1E-15 3.1E-19 109.9 10.9 76 128-209 6-82 (94)
332 2cqh_A IGF-II mRNA-binding pro 99.6 4.6E-15 1.6E-19 111.3 9.0 78 127-211 5-85 (93)
333 3nmr_A Cugbp ELAV-like family 99.6 4.1E-15 1.4E-19 125.1 9.4 81 247-327 3-89 (175)
334 2kvi_A Nuclear polyadenylated 99.6 3.6E-15 1.2E-19 112.5 8.0 77 127-211 7-85 (96)
335 2cpd_A Apobec-1 stimulating pr 99.6 1.5E-14 5.2E-19 109.7 11.3 76 127-210 12-90 (99)
336 1wf1_A RNA-binding protein RAL 99.6 8.4E-15 2.9E-19 113.5 9.9 75 127-209 24-100 (110)
337 2i2y_A Fusion protein consists 99.6 5.1E-15 1.7E-19 121.5 9.2 80 125-209 68-148 (150)
338 2cq2_A Hypothetical protein LO 99.6 6.7E-15 2.3E-19 113.2 9.1 80 128-213 23-110 (114)
339 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.3E-20 123.5 5.6 83 127-209 42-130 (143)
340 2g4b_A Splicing factor U2AF 65 99.6 1.1E-14 3.8E-19 122.1 10.5 80 128-207 92-172 (172)
341 2dit_A HIV TAT specific factor 99.6 2.8E-14 9.7E-19 110.8 12.0 81 244-328 12-104 (112)
342 1wg1_A KIAA1579 protein, homol 99.6 1E-14 3.5E-19 108.1 9.0 76 128-210 3-79 (88)
343 1wf0_A TDP-43, TAR DNA-binding 99.6 5.2E-15 1.8E-19 109.7 7.4 77 128-210 3-79 (88)
344 3v4m_A Splicing factor U2AF 65 99.5 1.1E-14 3.9E-19 111.3 8.3 80 246-325 4-96 (105)
345 1x5p_A Negative elongation fac 99.5 4.1E-14 1.4E-18 106.9 11.2 78 126-211 11-89 (97)
346 2e44_A Insulin-like growth fac 99.5 1.5E-14 5.1E-19 109.2 8.5 78 128-209 13-92 (96)
347 2hzc_A Splicing factor U2AF 65 99.5 1.8E-14 6.2E-19 106.5 8.7 71 128-205 4-86 (87)
348 2yh0_A Splicing factor U2AF 65 99.5 3.8E-14 1.3E-18 121.7 11.4 82 128-209 112-194 (198)
349 2diu_A KIAA0430 protein; struc 99.5 4.6E-14 1.6E-18 102.9 9.5 72 131-212 10-87 (96)
350 2adc_A Polypyrimidine tract-bi 99.5 6.4E-14 2.2E-18 123.4 11.9 79 244-327 31-111 (229)
351 2pe8_A Splicing factor 45; RRM 99.5 6.5E-14 2.2E-18 107.0 10.1 79 129-207 7-92 (105)
352 1sjr_A Polypyrimidine tract-bi 99.5 7.6E-14 2.6E-18 114.0 11.0 79 127-209 43-124 (164)
353 3beg_B Splicing factor, argini 99.5 2.8E-14 9.6E-19 111.3 8.0 72 129-207 15-92 (115)
354 3ue2_A Poly(U)-binding-splicin 99.5 3.3E-14 1.1E-18 110.7 8.0 80 245-324 18-107 (118)
355 1qm9_A Polypyrimidine tract-bi 99.5 6E-14 2E-18 120.6 10.2 76 247-327 3-80 (198)
356 1jmt_A Splicing factor U2AF 35 99.5 9.2E-15 3.1E-19 111.6 4.2 71 252-323 20-103 (104)
357 3zzy_A Polypyrimidine tract-bi 99.5 9.2E-14 3.2E-18 109.3 10.0 75 130-209 28-106 (130)
358 1fje_B Nucleolin RBD12, protei 99.5 7.8E-15 2.7E-19 123.6 3.7 82 244-327 10-92 (175)
359 2bz2_A Negative elongation fac 99.5 1.6E-13 5.4E-18 107.9 9.3 78 126-211 35-113 (121)
360 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.8E-13 2E-17 100.4 11.9 75 248-328 11-92 (100)
361 3sde_A Paraspeckle component 1 99.5 1.3E-13 4.3E-18 123.9 9.0 76 244-325 19-95 (261)
362 2e5i_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 105.7 9.6 72 132-209 27-102 (124)
363 3u1l_A PRE-mRNA-splicing facto 99.4 1.4E-13 4.8E-18 120.1 8.1 80 126-211 130-231 (240)
364 2dit_A HIV TAT specific factor 99.4 3.8E-12 1.3E-16 98.7 11.3 82 125-210 10-103 (112)
365 3s6e_A RNA-binding protein 39; 99.3 2.2E-12 7.7E-17 99.6 8.2 76 245-324 5-91 (114)
366 1jmt_A Splicing factor U2AF 35 99.3 4E-13 1.4E-17 102.5 4.0 71 135-206 20-103 (104)
367 3v4m_A Splicing factor U2AF 65 99.3 2.1E-12 7.2E-17 98.6 7.9 79 129-207 4-95 (105)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 2E-11 6.7E-16 92.0 12.4 76 130-211 10-92 (100)
369 3ue2_A Poly(U)-binding-splicin 99.3 3.4E-12 1.2E-16 99.3 8.2 79 129-207 19-107 (118)
370 3tht_A Alkylated DNA repair pr 99.3 3.2E-12 1.1E-16 117.6 8.8 76 243-324 14-97 (345)
371 3tht_A Alkylated DNA repair pr 99.2 5E-11 1.7E-15 109.7 9.1 75 126-206 14-96 (345)
372 1owx_A Lupus LA protein, SS-B, 99.2 6.6E-11 2.3E-15 91.4 8.0 75 243-323 14-93 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 9.4E-11 3.2E-15 84.7 7.9 72 245-325 5-85 (91)
374 3s6e_A RNA-binding protein 39; 99.1 3.7E-10 1.3E-14 87.1 8.8 76 128-207 5-91 (114)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.8E-09 6.2E-14 83.4 8.2 75 126-206 14-93 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 4.6E-10 1.6E-14 81.4 4.4 72 244-324 12-93 (95)
377 3dxb_A Thioredoxin N-terminall 98.9 2.3E-09 7.8E-14 93.6 7.2 67 258-324 140-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 9.5E-09 3.2E-13 74.2 8.5 73 128-209 5-86 (91)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 2.6E-08 8.9E-13 72.2 5.2 72 127-207 12-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.6 1.1E-07 3.6E-12 82.9 7.6 78 130-207 124-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.4 7.4E-07 2.5E-11 65.8 6.7 72 246-323 20-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.4 7E-06 2.4E-10 60.2 11.6 73 127-207 5-82 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.0 2.4E-05 8.1E-10 57.9 8.2 72 129-206 20-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.9 0.00032 1.1E-08 51.4 12.5 74 246-327 7-85 (104)
385 1wey_A Calcipressin 1; structu 97.8 9.7E-05 3.3E-09 54.5 8.1 73 247-325 5-83 (104)
386 1whv_A Poly(A)-specific ribonu 97.4 0.00046 1.6E-08 50.0 7.2 52 132-192 18-69 (100)
387 1wwh_A Nucleoporin 35, nucleop 97.3 0.0015 5.2E-08 49.5 9.1 74 244-324 21-95 (119)
388 3ctr_A Poly(A)-specific ribonu 97.1 0.00043 1.5E-08 50.3 4.2 52 132-192 8-59 (101)
389 1uw4_A UPF3X; nonsense mediate 97.1 0.0013 4.5E-08 47.6 6.6 63 248-310 2-66 (91)
390 1whv_A Poly(A)-specific ribonu 97.0 0.0019 6.7E-08 46.7 6.5 55 247-310 16-70 (100)
391 1uw4_A UPF3X; nonsense mediate 96.9 0.0033 1.1E-07 45.5 7.3 65 131-195 2-68 (91)
392 3ctr_A Poly(A)-specific ribonu 96.7 0.0019 6.4E-08 46.9 4.3 54 248-310 7-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 96.6 0.013 4.6E-07 44.3 8.9 70 130-206 24-94 (119)
394 3p3d_A Nucleoporin 53; structu 96.5 0.0051 1.7E-07 47.3 6.0 76 248-324 8-97 (132)
395 1wey_A Calcipressin 1; structu 96.2 0.042 1.4E-06 40.4 9.3 72 130-207 5-82 (104)
396 2l08_A Regulator of nonsense t 96.1 0.012 4E-07 42.9 5.6 64 247-310 9-74 (97)
397 3pq1_A Poly(A) RNA polymerase; 95.6 0.0079 2.7E-07 57.2 4.0 58 130-193 53-110 (464)
398 3pq1_A Poly(A) RNA polymerase; 95.5 0.0069 2.4E-07 57.6 3.2 59 246-310 52-110 (464)
399 3p3d_A Nucleoporin 53; structu 95.4 0.028 9.7E-07 43.2 5.8 76 131-207 8-97 (132)
400 2l08_A Regulator of nonsense t 95.4 0.018 6E-07 41.9 4.2 66 130-195 9-76 (97)
401 3d45_A Poly(A)-specific ribonu 86.9 1.1 3.8E-05 43.3 6.7 54 131-193 441-494 (507)
402 3d45_A Poly(A)-specific ribonu 83.5 1.7 6E-05 41.9 6.3 55 247-310 440-494 (507)
403 4e8u_A Putative uncharacterize 50.9 33 0.0011 27.5 5.9 50 132-184 14-74 (172)
404 4eyt_A Telomerase associated p 43.6 81 0.0028 22.0 6.8 54 248-309 13-66 (129)
405 4e8u_A Putative uncharacterize 34.3 69 0.0023 25.7 5.3 53 247-302 12-75 (172)
406 3ts2_A Protein LIN-28 homolog 32.3 6.6 0.00022 30.9 -0.9 28 262-297 2-29 (148)
407 3tj1_A RNA polymerase I-specif 30.3 11 0.00039 37.1 0.2 7 146-152 385-391 (649)
408 3tj1_A RNA polymerase I-specif 26.7 14 0.00049 36.4 0.2 9 147-155 383-391 (649)
409 2g0c_A ATP-dependent RNA helic 24.4 1.4E+02 0.0047 19.7 5.0 57 258-323 12-74 (76)
410 3fut_A Dimethyladenosine trans 24.2 82 0.0028 27.3 4.6 48 131-195 111-158 (271)
411 3fut_A Dimethyladenosine trans 23.7 61 0.0021 28.1 3.6 33 248-281 111-143 (271)
412 3uzu_A Ribosomal RNA small sub 23.2 35 0.0012 29.8 2.0 34 248-281 115-148 (279)
413 2i9x_A Putative septation prot 22.7 93 0.0032 21.8 3.7 26 273-298 5-30 (87)
414 3lpe_A Putative transcription 21.5 2.1E+02 0.0073 19.9 5.7 24 171-194 49-72 (92)
415 1i4w_A Mitochondrial replicati 20.8 74 0.0025 28.8 3.7 51 133-199 145-203 (353)
416 2ia9_A Putative septation prot 20.1 1.1E+02 0.0037 22.0 3.7 26 273-298 5-30 (100)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.1e-36 Score=263.37 Aligned_cols=179 Identities=26% Similarity=0.495 Sum_probs=153.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 205 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+||...+..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34557899999999999999999999999999999999999999999999999999999999999977779999999999
Q ss_pred ccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCC
Q 016219 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~ 285 (393)
+........ +......++|||+|||+.+|+++|+++|+.||.|..|+|++++.+
T Consensus 89 ~~~~~~~~~--------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 142 (196)
T 1l3k_A 89 AVSREDSQR--------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142 (196)
T ss_dssp CCC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT
T ss_pred ccCcccccc--------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC
Confidence 764332211 112334579999999999999999999999999999999999889
Q ss_pred CCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEcccCCCCC
Q 016219 286 GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPKPG 330 (393)
Q Consensus 286 g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~~~~~~ 330 (393)
|.++|||||+|.+.++|.+||..++..|+|+.|.|.|+.++....
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC------
T ss_pred CCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence 999999999999999999999986699999999999998776543
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.6e-36 Score=262.90 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=148.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
..+||||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||..+++. +.|+.+++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999998865 799999998864
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCC
Q 016219 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~ 287 (393)
..... .....++|||+|||+.+|+++|+++|++||.|..|+|+++. +.
T Consensus 94 ~~~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~ 141 (213)
T 4f02_A 94 RDPSL------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 141 (213)
T ss_dssp CCTHH------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TE
T ss_pred ccccc------------------------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CC
Confidence 32211 11234589999999999999999999999999999999984 55
Q ss_pred CccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 288 ~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
++|||||+|.+.++|.+||..|| ..|+|+.|.|.||.++
T Consensus 142 ~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 142 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 79999999999999999999999 8999999999999754
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-35 Score=246.31 Aligned_cols=163 Identities=22% Similarity=0.359 Sum_probs=148.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~ 209 (393)
|+|||+|||+++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|+..+++. +.|+.+.+.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999987 5889999999999999999999877755 89999999987543
Q ss_pred CCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCc
Q 016219 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (393)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~k 289 (393)
... .....++|||+|||+.+|+++|+++|++||.|..++|++++.+|.++
T Consensus 80 ~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 129 (166)
T 3md3_A 80 QQS------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR 129 (166)
T ss_dssp CCC------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE
T ss_pred CCC------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcc
Confidence 321 22345699999999999999999999999999999999999999999
Q ss_pred cEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 290 g~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
|||||+|.+.++|.+|+..|| ..|.|+.|+|.||.
T Consensus 130 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999998 89999999999985
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.7e-35 Score=249.34 Aligned_cols=164 Identities=29% Similarity=0.575 Sum_probs=148.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccC
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 208 (393)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+ ..+.|+.+.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc-cccCCeEcccccccc
Confidence 3579999999999999999999999999999999999989999999999999999999999963 568999998877632
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
.. .....++|||+|||+.+|+++|+++|++||.|..|+|++++.+|.+
T Consensus 81 ~~--------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~ 128 (167)
T 2cjk_A 81 RD--------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 128 (167)
T ss_dssp HH--------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT
T ss_pred hh--------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc
Confidence 10 1223468999999999999999999999999999999999889999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
+|||||+|.+.++|.+|+. ++ ..|.|+.|.|.||.++
T Consensus 129 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999998 67 8999999999999765
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.8e-35 Score=258.55 Aligned_cols=180 Identities=22% Similarity=0.418 Sum_probs=151.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~~ 208 (393)
.++|||+|||+++++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 47999999999999999999999999999999999998999999999999999999999997775 48999999976542
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
...... . ...........++|||+|||+.+|+++|+++|++||.|..|+|++++.+|.+
T Consensus 108 ~~~~~~--------~-------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 108 IGQAQP--------I-------------IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH 166 (216)
T ss_dssp CGGGHH--------H-------------HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE
T ss_pred ccccch--------h-------------hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 211000 0 0000012234579999999999999999999999999999999999889999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCCC
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~~ 330 (393)
+|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+.+.+.+.
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999999999999999999 89999999999998765443
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.4e-34 Score=242.45 Aligned_cols=162 Identities=25% Similarity=0.425 Sum_probs=148.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 589999999999999999999999999999999999989999999999999999999999977754 8999999998753
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
... ....++|||+|||+.+++++|+++|++||.|..++|++++.+|.+
T Consensus 83 ~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 130 (168)
T 1b7f_A 83 GGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRP 130 (168)
T ss_dssp CSS--------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCE
T ss_pred Ccc--------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCc
Confidence 221 123469999999999999999999999999999999999889999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEc
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a 323 (393)
+|||||+|.+.++|.+|+..|+ ..+.| ++|+|.||
T Consensus 131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999 78877 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.4e-34 Score=240.39 Aligned_cols=162 Identities=24% Similarity=0.415 Sum_probs=147.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+.+|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 479999999999999999999999999999999999989999999999999999999999977754 8999999998753
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
.. .....++|||+|||+.+++++|+++|++||.|..++|++++.+|.+
T Consensus 82 ~~--------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 129 (167)
T 1fxl_A 82 SS--------------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 129 (167)
T ss_dssp CC--------------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred Cc--------------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc
Confidence 21 1123468999999999999999999999999999999999889999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeE--EEEEEc
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHI--LNCQRA 323 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~--l~V~~a 323 (393)
+|||||+|.+.++|.+|+..|| ..+.|+. |+|.||
T Consensus 130 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 130 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999999999 8899965 888875
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.5e-33 Score=239.01 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=142.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHcCCCc-cC---CeeeE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG--KSKGYGFILFKTRSGARKALKEPQKK-IG---NRMTA 202 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~~~~~-~~---g~~i~ 202 (393)
..++|||+|||+++++++|+++|++||.|..|+|++++.++ +++|||||+|.+.++|.+|+..+++. +. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999877 89999999999999999999988864 43 56666
Q ss_pred EEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeec
Q 016219 203 CQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (393)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d 282 (393)
+.++..... .....++|||+|||+.+|+++|+++|++||.|..|+|+++
T Consensus 82 ~~~~~~~~~-------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 82 MKPADSEKN-------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp EEECGGGCC-------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred Ecccccccc-------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 666542211 1234568999999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEecCHHHHHHHHHcCC-CccC---CeEEEEEEc
Q 016219 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE---GHILNCQRA 323 (393)
Q Consensus 283 ~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~---G~~l~V~~a 323 (393)
+ +|.++|||||+|.+.++|.+|+..|| ..+. |++|+|.||
T Consensus 131 ~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 131 P-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp T-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred C-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 5 69999999999999999999999999 5454 499999997
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3.7e-33 Score=241.67 Aligned_cols=181 Identities=15% Similarity=0.253 Sum_probs=145.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcC-----------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-cc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYG-----------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KI 196 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G-----------~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~ 196 (393)
.+++|||+|||+.+++++|+++|++|| .|..+++ ++++|||||+|.+.++|.+|| .+++ .+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 368999999999999999999999994 4555543 567899999999999999999 5664 58
Q ss_pred CCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeE
Q 016219 197 GNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (393)
Q Consensus 197 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~ 276 (393)
.|+.|.|.++............... ..............++|||+|||+.+++++|+++|++||.|..
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 143 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSV------------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 143 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSC------------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcC------------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE
Confidence 9999999987644322111100000 0001111223356689999999999999999999999999999
Q ss_pred EeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 277 GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 277 v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
|+|++++.+|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+.++.+
T Consensus 144 ~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 144 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999998899999999999999999999999998 899999999999976643
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=6.6e-33 Score=235.31 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=142.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|..||.|.. .++++..+|+++|||||+|.+.++|.+|++ ++ ..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4556789999999999999999999999998876 345555688999999999999999999996 55 45899999999
Q ss_pred EccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCC
Q 016219 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (393)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~ 284 (393)
++...... .....++|||+|||+.+|+++|+++|++||.|..+ ..
T Consensus 87 ~~~~~~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~ 131 (175)
T 1fje_B 87 KPKGRDSK------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ 131 (175)
T ss_dssp CCCCSSCS------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CS
T ss_pred cCCCcccc------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cC
Confidence 87543221 22345799999999999999999999999988766 46
Q ss_pred CCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCC
Q 016219 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (393)
Q Consensus 285 ~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~ 327 (393)
+|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+.+++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 88999999999999999999999999 89999999999997653
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=7.6e-32 Score=228.01 Aligned_cols=156 Identities=17% Similarity=0.309 Sum_probs=138.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-Ccc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQY----G-------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~ 196 (393)
..++|||+|||+.+|+++|+++|++| | .|..+++. +++|||||+|.+.++|.+|+ .++ ..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35899999999999999999999999 6 66666653 45899999999999999999 555 558
Q ss_pred CCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeE
Q 016219 197 GNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (393)
Q Consensus 197 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~ 276 (393)
.|+.+.|.++..... ....++|||+|||+.+|+++|+++|++||.|..
T Consensus 76 ~g~~i~v~~~~~~~~--------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 123 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP--------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 123 (172)
T ss_dssp TTEECEEECCSSCCC--------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEE
T ss_pred cCceeeecCCcccCC--------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceE
Confidence 999999987542211 112569999999999999999999999999999
Q ss_pred EeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 277 GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 277 v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
|+|++++.+|.++|||||+|.+.++|.+|+..|| ..|.|++|.|.||
T Consensus 124 v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 124 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999998899999999999999999999999998 8999999999997
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=1.7e-31 Score=244.50 Aligned_cols=172 Identities=22% Similarity=0.357 Sum_probs=153.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
.+..++|||+|||+.+++++|+.+|+.||.|..+++++++.+|.++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456689999999999999999999999999999999999999999999999999999999999877755 8999999999
Q ss_pred ccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCC-cHHHHHHHHhcCCCeeEEeeeecCC
Q 016219 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSEL-EPQKLLAFFSKYGEIEEGPLGIDKA 284 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-t~~~L~~~F~~~G~I~~v~i~~d~~ 284 (393)
+...... ......++|||+|||+.+ |+++|+++|+.||.|..|+|++++
T Consensus 172 a~~~~~~-----------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~- 221 (284)
T 3smz_A 172 TDAGQLT-----------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ- 221 (284)
T ss_dssp CCGGGCC-----------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-
T ss_pred CCCCCCC-----------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-
Confidence 8543211 122345799999999995 999999999999999999999986
Q ss_pred CCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 285 ~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
+|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+.++..
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 89999999999999999999999999 899999999999976543
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=3.4e-31 Score=229.71 Aligned_cols=188 Identities=10% Similarity=0.101 Sum_probs=140.8
Q ss_pred CcCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 129 VHRKIFVHGLG-WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 129 ~~~~vfV~nLp-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
.+++|||+||| +.+++++|+.+|++||.|.+|+|+++ ++|||||+|.+.++|.+||+.|++. +.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999865 3799999999999999999988865 89999999998
Q ss_pred cCCCCCCCCCCCc--ccccccccccccccccc---cccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCe--eEEee
Q 016219 207 SIGPATTPAVAST--ATHQHQHQHQHQHQHQH---QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEI--EEGPL 279 (393)
Q Consensus 207 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I--~~v~i 279 (393)
............. ..............+.. .........+.++|||+|||+++|+++|+++|++||.| ..|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6433211100000 00000000000000000 00001123456799999999999999999999999999 89999
Q ss_pred eecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCe----EEEEEEc
Q 016219 280 GIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH----ILNCQRA 323 (393)
Q Consensus 280 ~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~----~l~V~~a 323 (393)
+.++ +.++|||||+|.+.++|.+||..|| ..|.|+ ++.|.+|
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8764 6667999999999999999999999 788876 6777776
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=8.6e-31 Score=239.53 Aligned_cols=191 Identities=18% Similarity=0.211 Sum_probs=144.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCee
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRM 200 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~ 200 (393)
.....++|||+|||+.+++++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+|+..+++. +.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34557899999999999999976 8999999999999875 7889999999999999999999888865 89999
Q ss_pred eEEEEccCCCCCCCCCCCcccccc------------------------------ccccc---------------------
Q 016219 201 TACQLASIGPATTPAVASTATHQH------------------------------QHQHQ--------------------- 229 (393)
Q Consensus 201 i~v~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~--------------------- 229 (393)
|.|.++.................. .....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999998643321000000000000 00000
Q ss_pred --------------ccc--------------cccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeee
Q 016219 230 --------------HQH--------------QHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (393)
Q Consensus 230 --------------~~~--------------~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~ 281 (393)
... ...............++|||+|||+.+|+++|+++|++||.|..|+|+.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 000 0000000112334568999999999999999999999999999999986
Q ss_pred cCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC-CeEEEEEEcc
Q 016219 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAI 324 (393)
Q Consensus 282 d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~-G~~l~V~~a~ 324 (393)
++ +|||||+|.+.++|.+|+..|| ..|. |+.|+|.|+.
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 53 6999999999999999999999 7888 9999999985
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2e-31 Score=245.07 Aligned_cols=172 Identities=13% Similarity=0.210 Sum_probs=142.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
..++|||+|||+.+++++|+.+|+.|| .|..|+|++++. |.++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999874 889999999999999999999977754 89999999988
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCC-CcHHHHHHHHhcCCCeeEEeeeecCC-
Q 016219 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKA- 284 (393)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~t~~~L~~~F~~~G~I~~v~i~~d~~- 284 (393)
......... .......++|||+|||+. +|+++|+++|++||.|..|+|+++..
T Consensus 195 ~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~ 249 (292)
T 2ghp_A 195 NPLEKSKRT-------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE 249 (292)
T ss_dssp CCC----------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-
T ss_pred CCCcccccc-------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc
Confidence 643221110 123345679999999999 99999999999999999999999876
Q ss_pred CCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCC
Q 016219 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (393)
Q Consensus 285 ~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~ 327 (393)
||.++|||||+|.+.++|.+|+ .|| ..|.|+.|.|.|+.+++
T Consensus 250 tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 250 HSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp --CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 6999999999999999999999 888 88999999999998653
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.5e-30 Score=230.48 Aligned_cols=191 Identities=15% Similarity=0.197 Sum_probs=145.9
Q ss_pred CCCCCcCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeE
Q 016219 125 DEDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~ 202 (393)
...+..++|||+|||+ .+++++|+++|++||.|..|+|++++ +|||||+|.+.++|.+|+..+++ .+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445679999999999 99999999999999999999999875 78999999999999999997775 58999999
Q ss_pred EEEccCCCCCCCCCCCcccccccccccc---cccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCC-CeeEEe
Q 016219 203 CQLASIGPATTPAVASTATHQHQHQHQH---QHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGP 278 (393)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G-~I~~v~ 278 (393)
|.++........................ ...............+.++|||+|||+.+++++|+++|++|| .|..|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9998654322211110000000000000 000000001112234568999999999999999999999999 999999
Q ss_pred eeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC-CeEEEEEEccc
Q 016219 279 LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAID 325 (393)
Q Consensus 279 i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~-G~~l~V~~a~~ 325 (393)
|+.+ .+|||||+|.+.++|.+|+..|+ ..|. |+.|+|.|+.+
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 9653 38999999999999999999999 8888 99999999865
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.1e-30 Score=226.19 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=143.4
Q ss_pred cCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 130 HRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 130 ~~~vfV~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
+++|||+|||+ .+++++|+.+|++||.|..|+|++++ +|||||+|.+.++|.+|+..+++ .+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998865 78999999999999999997775 5899999999987
Q ss_pred CCCCCCCCCCCcccccccccccc---cccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCC-CeeEEeeeecC
Q 016219 208 IGPATTPAVASTATHQHQHQHQH---QHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDK 283 (393)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G-~I~~v~i~~d~ 283 (393)
......+................ +..............+.++|||+|||+.+++++|+++|++|| .|..|+|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 54332211111000000000000 000000111112234578999999999999999999999999 9999999764
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCC-CccC-CeEEEEEEccc
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAID 325 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~-G~~l~V~~a~~ 325 (393)
.+|||||+|.+.++|.+|+..|| ..+. |+.|+|.|+.+
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 28999999999999999999999 7888 99999999864
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=8.1e-30 Score=233.31 Aligned_cols=153 Identities=24% Similarity=0.363 Sum_probs=140.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
.++|||+|||+++|+++|+++|+.|| |..|++ ++++|||||+|.+.++|.+|+..+++. +.|+.|.|.++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~- 93 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP- 93 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-
Confidence 57999999999999999999999999 999887 467899999999999999999987754 899999998742
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~ 288 (393)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.+
T Consensus 94 -------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 136 (284)
T 3smz_A 94 -------------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQS 136 (284)
T ss_dssp -------------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred -------------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCcc
Confidence 1248999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCC
Q 016219 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (393)
Q Consensus 289 kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~ 327 (393)
+|||||+|.+.++|.+|+..|+ ..|.|+.|.|.|+.+..
T Consensus 137 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 137 KGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9999999999999999999888 89999999999997654
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.7e-30 Score=232.45 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=139.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....++|||+|||+++|+++|+.+|++||.|..|+|.+ ++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34567999999999999999999999999999999854 4789999999999999999977754 8999999998
Q ss_pred ccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCC
Q 016219 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~ 285 (393)
+.. .++|||+|||+.+|+++|+.+|+.||.|..|+|+++ .+
T Consensus 93 a~~--------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~ 133 (261)
T 3sde_A 93 ATH--------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DR 133 (261)
T ss_dssp CCC--------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TT
T ss_pred ccc--------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CC
Confidence 741 248999999999999999999999999999999999 58
Q ss_pred CCCccEEEEEecCHHHHHHHHHcCC-C-ccC---CeEEEEEEcccC
Q 016219 286 GKPKGFCLFVYKTVDAAKKALEEPH-K-NFE---GHILNCQRAIDG 326 (393)
Q Consensus 286 g~~kg~aFV~F~~~~~A~~Al~~~~-~-~~~---G~~l~V~~a~~~ 326 (393)
|.++|||||+|.+.++|.+|+..|+ . .+. |++|.|.++...
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999999999999999999995 3 333 999999998754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6e-30 Score=235.15 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=135.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~ 204 (393)
......++|||+|||+.+|+++|+.+|+.||.|..|+|++++.. ++|||||+|.+.++|.+|+...+..+.|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 34456789999999999999999999999999999999998733 5899999999999999999743355899999998
Q ss_pred EccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCC-CeeEEeeeecC
Q 016219 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDK 283 (393)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G-~I~~v~i~~d~ 283 (393)
++. .++|||+|||+.+|+++|+++|+.|| .|..|+|++++
T Consensus 114 ~~~---------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 154 (292)
T 2ghp_A 114 HLT---------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR 154 (292)
T ss_dssp ECC---------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---
T ss_pred ECC---------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 751 35999999999999999999999999 99999999886
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCC
Q 016219 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (393)
Q Consensus 284 ~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~ 328 (393)
. |.++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.|+.+...
T Consensus 155 ~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 155 F-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp -----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred C-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 4 8899999999999999999999888 899999999999976544
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=3.4e-24 Score=178.33 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=112.1
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc--cCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccc
Q 016219 159 DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQH 236 (393)
Q Consensus 159 ~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~--~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (393)
.++|+++.. +++|||||+|.+.+.|.+|+..+++. +.|.. .+......... .....
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~ 59 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEW-TYDDATKTFTV-------------------TEGSH 59 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE-EEETTTTEEEE-------------------ECCCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcc-cccCccccccc-------------------ccccc
Confidence 467777753 68999999999999999999887632 22222 22111000000 00000
Q ss_pred cccCCccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC
Q 016219 237 QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (393)
Q Consensus 237 ~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G 315 (393)
...........++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+||..|| ..|.|
T Consensus 60 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 60 HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 01111233456799999999999999999999999999999999998899999999999999999999999999 78999
Q ss_pred eEEEEEEcccCCC
Q 016219 316 HILNCQRAIDGPK 328 (393)
Q Consensus 316 ~~l~V~~a~~~~~ 328 (393)
+.|+|.|+.+...
T Consensus 140 ~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 140 RELRVQMARYGRP 152 (158)
T ss_dssp SEEEEEEECCSSC
T ss_pred eEEEEEECCCCCC
Confidence 9999999976543
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.5e-22 Score=152.01 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=77.1
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
..+++|||+|||+++|+++|+++|++||.|..|+|++|+.+|.++|||||+|.+.++|.+|+..|| ..|.|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446799999999999999999999999999999999999999999999999999999999999998 8999999999998
Q ss_pred cc
Q 016219 324 ID 325 (393)
Q Consensus 324 ~~ 325 (393)
.|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=7.4e-22 Score=154.78 Aligned_cols=108 Identities=24% Similarity=0.464 Sum_probs=71.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
..+|||+|||+.+++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+||..+++. +.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999986 458999999999999999999987755 8999999999864
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHH
Q 016219 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQK 263 (393)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~ 263 (393)
........ .......++|||+|||+++|++.
T Consensus 83 ~~~~~~~~------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------------------------------
T ss_pred cccccccc------------------------ccccCCCCceEeCCCCCCccccc
Confidence 33221110 01122335799999999998763
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=6e-22 Score=148.33 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=75.9
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCC-CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC--CccCCeEEEEEEcc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQRAI 324 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G-~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~--~~~~G~~l~V~~a~ 324 (393)
++|||+|||+++|+++|+++|++|| .|..|+|++|+.+|.++|||||+|.+.++|.+||..++ ..|.|++|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 89999999999999999999999999999999999875 57999999999997
Q ss_pred cCCC
Q 016219 325 DGPK 328 (393)
Q Consensus 325 ~~~~ 328 (393)
++++
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6654
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=1e-21 Score=161.73 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=108.2
Q ss_pred CCcceEEEEEecCHHHHHHHHHcC-CCc-cCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccc
Q 016219 169 GKSKGYGFILFKTRSGARKALKEP-QKK-IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYT 246 (393)
Q Consensus 169 ~~~~g~afv~f~~~~~a~~a~~~~-~~~-~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
...+|+++|+|.+.+.|.+|+..+ ++. +.| .+.+.++........... .............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~~~ 72 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH----------------HHHHHMHRDSCPL 72 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS----------------SCCCCSCSSSSTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc----------------cccccccccCCCC
Confidence 467899999999999999999988 755 788 888876642211100000 0001112233455
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
.++|||+|||+.+|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+.+
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 689999999999999999999999999999999876 59999999999999999999988 889999999999976
Q ss_pred CC
Q 016219 326 GP 327 (393)
Q Consensus 326 ~~ 327 (393)
++
T Consensus 148 ~~ 149 (150)
T 2i2y_A 148 EK 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 26
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=5.2e-21 Score=183.62 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=79.5
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|| ..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred ccCCCC
Q 016219 324 IDGPKP 329 (393)
Q Consensus 324 ~~~~~~ 329 (393)
.+....
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=145.03 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=74.9
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCC--eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-C----ccCCe
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGE--IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K----NFEGH 316 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~--I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~----~~~G~ 316 (393)
.....+|||+|||+.+|+++|+++|++||. |..|+|++|+.+|++||||||+|.+.++|.+|+..|| . .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 334569999999999999999999999995 6799999999999999999999999999999999998 3 48999
Q ss_pred EEEEEEccc
Q 016219 317 ILNCQRAID 325 (393)
Q Consensus 317 ~l~V~~a~~ 325 (393)
+|.|.||.+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=145.56 Aligned_cols=80 Identities=21% Similarity=0.374 Sum_probs=76.5
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
+.++|||+|||+.+|+++|+++|++||.|..|+|++|+.+|+++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999 89999999999985
Q ss_pred c
Q 016219 325 D 325 (393)
Q Consensus 325 ~ 325 (393)
.
T Consensus 85 ~ 85 (110)
T 3s8s_A 85 K 85 (110)
T ss_dssp T
T ss_pred C
Confidence 3
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=7.9e-20 Score=143.34 Aligned_cols=89 Identities=22% Similarity=0.377 Sum_probs=81.7
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 89999999999
Q ss_pred EcccCCCCCC
Q 016219 322 RAIDGPKPGK 331 (393)
Q Consensus 322 ~a~~~~~~~~ 331 (393)
|+..+.....
T Consensus 91 ~a~~~~~~~~ 100 (115)
T 2dgo_A 91 WATRKPPAPK 100 (115)
T ss_dssp ESSCCCCCSC
T ss_pred EccCCCCCCc
Confidence 9987665433
No 30
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=7.5e-21 Score=153.23 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=81.0
Q ss_pred EEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeee
Q 016219 174 YGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252 (393)
Q Consensus 174 ~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 252 (393)
++|++|.+...+..|+..+++. ..|+. . .... ..+......++|||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~--~~~~------------------------------~~~~~~~~~~~l~V 52 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-S--MSYG------------------------------RPPPDVEGMTSLKV 52 (135)
T ss_dssp --------------------------------CCSC------------------------------CSCSSGGGCCCEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-C--CCcC------------------------------CCCCCCCCCCEEEE
Confidence 6778888888888888888743 22221 0 0000 01123345679999
Q ss_pred cCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccCCCC
Q 016219 253 SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (393)
Q Consensus 253 ~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~~~~ 329 (393)
+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+.+...+
T Consensus 53 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 53 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp ECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999999998899999999999999999999999999 8899999999999866544
No 31
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=142.83 Aligned_cols=88 Identities=30% Similarity=0.470 Sum_probs=81.0
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~ 322 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|.|+.|+|.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 44556899999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cccCCCCC
Q 016219 323 AIDGPKPG 330 (393)
Q Consensus 323 a~~~~~~~ 330 (393)
+.....+.
T Consensus 93 a~~~~~~~ 100 (116)
T 2cqd_A 93 AYLGAKPR 100 (116)
T ss_dssp STTTCCCC
T ss_pred cccCCCcc
Confidence 97654443
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=139.62 Aligned_cols=84 Identities=29% Similarity=0.424 Sum_probs=78.9
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 455799999999999999999999999999999999998899999999999999999999999999 8899999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 77654
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=137.84 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=75.6
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..+.|+.|+|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45799999999999999999999999999999999998899999999999999999999999998 89999999999997
Q ss_pred cCC
Q 016219 325 DGP 327 (393)
Q Consensus 325 ~~~ 327 (393)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=139.19 Aligned_cols=84 Identities=21% Similarity=0.415 Sum_probs=77.9
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||. |+ ..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3455799999999999999999999999999999999999999999999999999999999999 67 899999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 976544
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=138.32 Aligned_cols=83 Identities=19% Similarity=0.394 Sum_probs=78.1
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45799999999999999999999999999999999999899999999999999999999999988 89999999999997
Q ss_pred cCCC
Q 016219 325 DGPK 328 (393)
Q Consensus 325 ~~~~ 328 (393)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-20 Score=139.42 Aligned_cols=84 Identities=23% Similarity=0.390 Sum_probs=78.6
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEE-eeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG-PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v-~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
..++|||+|||+.+|+++|+.+|++||.|..| +|++++.+|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999999 999998999999999999999999999999999 8899999999999
Q ss_pred ccCCCC
Q 016219 324 IDGPKP 329 (393)
Q Consensus 324 ~~~~~~ 329 (393)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 766543
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=142.59 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=76.9
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45799999999999999999999999999999999997 99999999999999999999999999 89999999999997
Q ss_pred cCCC
Q 016219 325 DGPK 328 (393)
Q Consensus 325 ~~~~ 328 (393)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.5e-20 Score=140.47 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=80.1
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4456899999999999999999999999999999999999899999999999999999999999999 899999999999
Q ss_pred cccCCCC
Q 016219 323 AIDGPKP 329 (393)
Q Consensus 323 a~~~~~~ 329 (393)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9766543
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=139.99 Aligned_cols=86 Identities=15% Similarity=0.293 Sum_probs=79.9
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 89999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9976644
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=6.9e-20 Score=134.80 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.4
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
.+|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999999999999999999999999999999988 8999999999999765
Q ss_pred C
Q 016219 327 P 327 (393)
Q Consensus 327 ~ 327 (393)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=138.81 Aligned_cols=80 Identities=26% Similarity=0.403 Sum_probs=75.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
..+++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999988755 89999999987
Q ss_pred c
Q 016219 207 S 207 (393)
Q Consensus 207 ~ 207 (393)
.
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 4
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.1e-19 Score=142.45 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=79.9
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|| ..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999899999999999999999999999998 89999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9976644
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.2e-20 Score=140.33 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=79.7
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999988 889999999999
Q ss_pred cccCCCC
Q 016219 323 AIDGPKP 329 (393)
Q Consensus 323 a~~~~~~ 329 (393)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9766543
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-20 Score=140.54 Aligned_cols=85 Identities=22% Similarity=0.319 Sum_probs=79.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456899999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 976543
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=9.9e-20 Score=135.23 Aligned_cols=80 Identities=24% Similarity=0.583 Sum_probs=75.3
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..++..|+|+.|.|.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34567999999999999999999999999999999999999999999999999999999999988778899999999986
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.8e-20 Score=140.19 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=71.7
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCC--CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G--~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.+|||+|||+.+|+++|+++|++|| .|..|+|++++.+|+++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999 89999999999998
Q ss_pred cCCCC
Q 016219 325 DGPKP 329 (393)
Q Consensus 325 ~~~~~ 329 (393)
+.+.+
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.3e-20 Score=139.69 Aligned_cols=85 Identities=27% Similarity=0.459 Sum_probs=79.4
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999999899999999999999999999999998 889999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 48
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.2e-19 Score=150.32 Aligned_cols=85 Identities=20% Similarity=0.349 Sum_probs=79.4
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|++||.|..|+|++++.++.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 986543
No 49
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=2.8e-20 Score=141.93 Aligned_cols=81 Identities=30% Similarity=0.375 Sum_probs=76.9
Q ss_pred ccceeeecCCCC------CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC-eE
Q 016219 246 TQRKIFVSNVGS------ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-HI 317 (393)
Q Consensus 246 ~~~~lfV~nLp~------~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G-~~ 317 (393)
..++|||+|||+ .+++++|+++|++||.|..|+|++++.||+++|||||+|.+.++|.+||..|| ..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999999999 89999 99
Q ss_pred EEEEEcccC
Q 016219 318 LNCQRAIDG 326 (393)
Q Consensus 318 l~V~~a~~~ 326 (393)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 50
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.1e-19 Score=140.96 Aligned_cols=85 Identities=16% Similarity=0.345 Sum_probs=77.5
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+||..++..|+|+.|+|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 44567999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86654
No 51
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=144.72 Aligned_cols=87 Identities=20% Similarity=0.354 Sum_probs=80.5
Q ss_pred ccccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 242 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
......++|||+|||+.+|+++|+.+|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|| ..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344566899999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred EEcccCCC
Q 016219 321 QRAIDGPK 328 (393)
Q Consensus 321 ~~a~~~~~ 328 (393)
.++.++..
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99976543
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=137.91 Aligned_cols=85 Identities=20% Similarity=0.371 Sum_probs=78.5
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++ +|+++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556799999999999999999999999999999999997 89999999999999999999999998 88999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.+++.
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9976543
No 53
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=140.08 Aligned_cols=86 Identities=26% Similarity=0.406 Sum_probs=80.0
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+.+|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.+++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987653
No 54
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=138.64 Aligned_cols=86 Identities=27% Similarity=0.368 Sum_probs=79.5
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeec-CCCCCCccEEEEEecCHHHHHHHHHcC-C-CccCCeEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID-KATGKPKGFCLFVYKTVDAAKKALEEP-H-KNFEGHILN 319 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d-~~~g~~kg~aFV~F~~~~~A~~Al~~~-~-~~~~G~~l~ 319 (393)
.....++|||+|||+.+|+++|+++|+.||.|..|+|+++ +.++.++|||||+|.+.++|.+||..| | ..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3455689999999999999999999999999999999998 789999999999999999999999999 7 899999999
Q ss_pred EEEcccCCC
Q 016219 320 CQRAIDGPK 328 (393)
Q Consensus 320 V~~a~~~~~ 328 (393)
|.|+.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999976544
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=137.67 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=77.4
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCC---CCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA---TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~---~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
..++|||+|||+.+|+++|+++|++||.|..|+|++++. ++.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999999999876 66899999999999999999999999 89999999999
Q ss_pred EcccCCCC
Q 016219 322 RAIDGPKP 329 (393)
Q Consensus 322 ~a~~~~~~ 329 (393)
++.++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99765543
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.1e-19 Score=145.04 Aligned_cols=87 Identities=26% Similarity=0.430 Sum_probs=80.7
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|| ..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456799999999999999999999999999999999998899999999999999999999999988 89999999999
Q ss_pred EcccCCCC
Q 016219 322 RAIDGPKP 329 (393)
Q Consensus 322 ~a~~~~~~ 329 (393)
|+.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876554
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.3e-19 Score=137.17 Aligned_cols=81 Identities=15% Similarity=0.404 Sum_probs=77.1
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
.++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4699999999999999999999999999999999999999999999999999999999999998 899999999999976
Q ss_pred CC
Q 016219 326 GP 327 (393)
Q Consensus 326 ~~ 327 (393)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=3.2e-19 Score=136.89 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=76.7
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|+.|| |..|+|++++.+|+++|||||+|.+.++|.+|| .|+ ..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 999999999999999999999999999999999 788 899999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976543
No 59
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=7.1e-20 Score=146.96 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=78.2
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeE--EeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-C----ccCC
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K----NFEG 315 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~--v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~----~~~G 315 (393)
.....++|||+|||+.+|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|| . .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455689999999999999999999999999977 99999999999999999999999 9999999999 7 8999
Q ss_pred eEEEEEEcccCCC
Q 016219 316 HILNCQRAIDGPK 328 (393)
Q Consensus 316 ~~l~V~~a~~~~~ 328 (393)
|.|+|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999976543
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.2e-19 Score=134.08 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=75.9
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 355799999999999999999999999999999999998999999999999999999999999988 8999999999997
Q ss_pred c
Q 016219 324 I 324 (393)
Q Consensus 324 ~ 324 (393)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 61
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=138.93 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=74.0
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+++|+++|+++|++||.|..|+|++++. |.++|||||+|.+.++|.+||. ++ ..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3457999999999999999999999999999999999987 9999999999999999999999 66 8999999999998
Q ss_pred cc
Q 016219 324 ID 325 (393)
Q Consensus 324 ~~ 325 (393)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 62
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=138.39 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=78.1
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhc-CCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Cc-cCCeEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSK-YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KN-FEGHILNC 320 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~-~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~-~~G~~l~V 320 (393)
....++|||+|||+.+|+++|+++|+. ||.|..|+|++++ +|.++|||||+|.+.++|.+|+..|+ .. |.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345579999999999999999999999 9999999999998 99999999999999999999999999 77 99999999
Q ss_pred EEcccCCCC
Q 016219 321 QRAIDGPKP 329 (393)
Q Consensus 321 ~~a~~~~~~ 329 (393)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999765443
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=3.4e-19 Score=137.29 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=77.7
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC---eEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG---HILN 319 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G---~~l~ 319 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|++++ +|.++|||||+|.+.++|.+||..|| ..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999999997 79999999999999999999999999 77887 9999
Q ss_pred EEEcccCCCC
Q 016219 320 CQRAIDGPKP 329 (393)
Q Consensus 320 V~~a~~~~~~ 329 (393)
|.|+.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=135.42 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=77.0
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred Ecc
Q 016219 322 RAI 324 (393)
Q Consensus 322 ~a~ 324 (393)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 65
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=135.55 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=77.9
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred Eccc
Q 016219 322 RAID 325 (393)
Q Consensus 322 ~a~~ 325 (393)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 66
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.4e-19 Score=141.78 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=73.3
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
..+|||+|||+.+|+++|+++|++||.|..|+|++++ +.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3589999999999999999999999999999999985 5589999999999999999999998 899999999999876
Q ss_pred CC
Q 016219 326 GP 327 (393)
Q Consensus 326 ~~ 327 (393)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.2e-19 Score=138.60 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=78.2
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc---CCeEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF---EGHIL 318 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~---~G~~l 318 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|| ..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34456899999999999999999999999999999999999999999999999999999999999998 566 88999
Q ss_pred EEEEcccCC
Q 016219 319 NCQRAIDGP 327 (393)
Q Consensus 319 ~V~~a~~~~ 327 (393)
+|.++.++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999997654
No 68
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=136.76 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=76.2
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCC-CCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT-GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~-g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
...++|||+|||+.+|+++|+++|+.|| |..|+|++++.+ |+++|||||+|.+.++|.+|| .|+ ..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4558999999999999999999999999 999999999887 999999999999999999999 888 899999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 976544
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=139.03 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=79.3
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44566899999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EcccCC
Q 016219 322 RAIDGP 327 (393)
Q Consensus 322 ~a~~~~ 327 (393)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997653
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=2.3e-19 Score=139.49 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=80.0
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+.+|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 71
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=139.97 Aligned_cols=86 Identities=29% Similarity=0.427 Sum_probs=79.4
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCee--------EEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~--------~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~ 313 (393)
.....++|||+|||+.+|+++|+++|+.||.|. .|+|++++.+|+++|||||+|.+.++|.+||..|| ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345568999999999999999999999999999 69999998999999999999999999999999988 899
Q ss_pred CCeEEEEEEcccCCC
Q 016219 314 EGHILNCQRAIDGPK 328 (393)
Q Consensus 314 ~G~~l~V~~a~~~~~ 328 (393)
.|+.|+|.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999976544
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=136.66 Aligned_cols=84 Identities=17% Similarity=0.315 Sum_probs=78.1
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCee-EEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeE----
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIE-EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI---- 317 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~-~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~---- 317 (393)
....++|||+|||+.+++++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|.+|+..|| ..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 99999999999999999999999999999999999 8899999
Q ss_pred EEEEEcccCC
Q 016219 318 LNCQRAIDGP 327 (393)
Q Consensus 318 l~V~~a~~~~ 327 (393)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999986543
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=138.32 Aligned_cols=87 Identities=18% Similarity=0.326 Sum_probs=79.4
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-------CccCC
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-------KNFEG 315 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-------~~~~G 315 (393)
.....++|||+|||+.+|+++|+.+|+.||.|..|+|++++.+|.++|||||+|.+.++|.+||..|+ ..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34456799999999999999999999999999999999999999999999999999999999999885 57899
Q ss_pred eEEEEEEcccCCCC
Q 016219 316 HILNCQRAIDGPKP 329 (393)
Q Consensus 316 ~~l~V~~a~~~~~~ 329 (393)
+.|+|.|+.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=136.69 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=77.7
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|+++ +|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3446689999999999999999999999999999999987 89999999999999999999999998 88999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987654
No 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=136.14 Aligned_cols=82 Identities=27% Similarity=0.382 Sum_probs=76.9
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeE--------EeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--------GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~--------v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~ 313 (393)
.....++|||+|||+.+|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+.++|.+|+..|+ ..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4455679999999999999999999999999999 9999999999999999999999999999999988 899
Q ss_pred CCeEEEEEEcc
Q 016219 314 EGHILNCQRAI 324 (393)
Q Consensus 314 ~G~~l~V~~a~ 324 (393)
.|+.|+|.+|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999973
No 76
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=138.24 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=78.8
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+.+|+.||.|..|+|++++.++.++|||||+|.+.++|.+||.. + ..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345568999999999999999999999999999999999999999999999999999999999999 7 89999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9976654
No 77
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=134.59 Aligned_cols=81 Identities=16% Similarity=0.317 Sum_probs=74.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-C-ccCCeeeEEEEc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-K-KIGNRMTACQLA 206 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~-~~~g~~i~v~~~ 206 (393)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|.+||+.++ + .+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999999875 4 489999999998
Q ss_pred cCCC
Q 016219 207 SIGP 210 (393)
Q Consensus 207 ~~~~ 210 (393)
...+
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.3e-19 Score=134.60 Aligned_cols=86 Identities=19% Similarity=0.329 Sum_probs=78.2
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~ 322 (393)
.....++|||+|||+.+++++|+.+|+.||.|..|+|++++.+|.++|||||+|.+.++|.+||.. .+.|.|+.|.|.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 344567999999999999999999999999999999999999999999999999999999999995 4689999999999
Q ss_pred cccCCCC
Q 016219 323 AIDGPKP 329 (393)
Q Consensus 323 a~~~~~~ 329 (393)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9876543
No 79
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=139.83 Aligned_cols=85 Identities=16% Similarity=0.422 Sum_probs=78.4
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
....++|||+|||+.+|+++|+.+|+.||.|..|+|++++.+|.++|||||+|.+.++|.+||...+..|.|+.|+|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34568999999999999999999999999999999999999999999999999999999999999338899999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 80
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=1.2e-19 Score=159.38 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=75.4
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCC--CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G--~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.++|||+|||+.+|+++|+++|++|| .|..|+|++|+.+|+++|||||+|.+.++|.+||..|| ..|.|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 46999999999999999999999999 99999999999999999999999999999999999999 8999999999998
Q ss_pred cc
Q 016219 324 ID 325 (393)
Q Consensus 324 ~~ 325 (393)
..
T Consensus 148 ~~ 149 (229)
T 3q2s_C 148 NK 149 (229)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=4.6e-19 Score=132.21 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=75.5
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+ .++ ..|.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 788 89999999999986
Q ss_pred cC
Q 016219 325 DG 326 (393)
Q Consensus 325 ~~ 326 (393)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 82
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.6e-19 Score=142.95 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=79.5
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
...+.++|||+|||+.+|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred EcccCC
Q 016219 322 RAIDGP 327 (393)
Q Consensus 322 ~a~~~~ 327 (393)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997654
No 83
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=135.93 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=76.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+++++|+++|+.||.|..|+|++++ +|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456799999999999999999999999999999999987 69999999999999999999999988 899999999999
Q ss_pred cccC
Q 016219 323 AIDG 326 (393)
Q Consensus 323 a~~~ 326 (393)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 84
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=131.44 Aligned_cols=77 Identities=18% Similarity=0.403 Sum_probs=74.0
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEcc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~ 324 (393)
++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..++..+.|+.|+|.+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 47999999999999999999999999999999999989999999999999999999999999988999999999973
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=2.3e-19 Score=129.28 Aligned_cols=74 Identities=24% Similarity=0.587 Sum_probs=70.8
Q ss_pred eeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 249 ~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
+|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+. ++ ..|.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 66 8999999999986
No 86
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=133.37 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=76.7
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++. .++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345568999999999999999999999999999999998753 489999999999999999999988 88999999999
Q ss_pred EcccCCCC
Q 016219 322 RAIDGPKP 329 (393)
Q Consensus 322 ~a~~~~~~ 329 (393)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99876543
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-19 Score=135.95 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=71.4
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V 320 (393)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..++ ..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999865 8999999999999999999764 5799999999
Q ss_pred EEcccCCCC
Q 016219 321 QRAIDGPKP 329 (393)
Q Consensus 321 ~~a~~~~~~ 329 (393)
.|+..+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999765443
No 88
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=135.72 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=75.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
+..++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+|+. +.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999988865 89999999997
Q ss_pred c
Q 016219 207 S 207 (393)
Q Consensus 207 ~ 207 (393)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 89
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=137.58 Aligned_cols=83 Identities=29% Similarity=0.476 Sum_probs=78.1
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+++++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 455799999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=135.39 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=77.6
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCC-eeEEeee-ecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLG-IDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~-I~~v~i~-~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V 320 (393)
..++|||+|||+.+|+++|+++|+.||. |..|.|+ .++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 888899999999999999999999999985 5899999999
Q ss_pred EEcccCCCC
Q 016219 321 QRAIDGPKP 329 (393)
Q Consensus 321 ~~a~~~~~~ 329 (393)
.|+.++..+
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876554
No 91
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.3e-19 Score=133.36 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=74.1
Q ss_pred cccceeeecCCCCCCcHHHHH----HHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~----~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
...++|||+|||+.+++++|+ ++|++||.|..|+|++++.+ +|||||+|.+.++|.+|+..|| ..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345799999999999999999 99999999999999988755 8999999999999999999999 789999999
Q ss_pred EEEcccCCC
Q 016219 320 CQRAIDGPK 328 (393)
Q Consensus 320 V~~a~~~~~ 328 (393)
|.++.+.+.
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999976543
No 92
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=133.98 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=73.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-----cCCee
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGE--IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-----IGNRM 200 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~--i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-----~~g~~ 200 (393)
..-.||||+|||+.+|+++|+++|++||. |.+|+|++++.+|+++|||||+|.+.++|.+|++.+++. +.||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34569999999999999999999999995 679999999999999999999999999999999998863 79999
Q ss_pred eEEEEcc
Q 016219 201 TACQLAS 207 (393)
Q Consensus 201 i~v~~~~ 207 (393)
|.|.++.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999975
No 93
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.2e-18 Score=137.26 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=76.9
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|| ..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44566899999999999999999999999999999999998899999999999999999999999998 89999999999
Q ss_pred Ecc
Q 016219 322 RAI 324 (393)
Q Consensus 322 ~a~ 324 (393)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 973
No 94
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=132.96 Aligned_cols=83 Identities=16% Similarity=0.306 Sum_probs=75.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+++++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44568999999999999999999999999999999998853 369999999999999999999988 789999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 976543
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-19 Score=134.29 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=77.3
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|| ..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3445799999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred cccC
Q 016219 323 AIDG 326 (393)
Q Consensus 323 a~~~ 326 (393)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 96
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=145.38 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=75.7
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCC--CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G--~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
..++|||+|||+.+|+++|+++|+.|| .|..|+|++|+.+|+++|||||+|.+.++|.+||..|+ ..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999999999 899999999999
Q ss_pred ccc
Q 016219 323 AID 325 (393)
Q Consensus 323 a~~ 325 (393)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 97
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=130.16 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=75.4
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+||. |+ ..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 445799999999999999999999999 9999999998 789999999999999999999999 88 8899999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.+++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 76643
No 98
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=6.7e-19 Score=133.03 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=75.9
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+++|++||.|..|+|++++. |.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344568999999999999999999999999999999999875 9999999999999999999999988 89999999999
Q ss_pred Eccc
Q 016219 322 RAID 325 (393)
Q Consensus 322 ~a~~ 325 (393)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9853
No 99
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.8e-18 Score=128.35 Aligned_cols=82 Identities=35% Similarity=0.704 Sum_probs=76.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~ 204 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..++..+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999987778999999998
Q ss_pred Ec
Q 016219 205 LA 206 (393)
Q Consensus 205 ~~ 206 (393)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.3e-18 Score=138.34 Aligned_cols=82 Identities=24% Similarity=0.382 Sum_probs=76.5
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+ .|+ ..|.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34579999999999999999999999999999999999999999999999999999999999 788 8999999999998
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.+..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=131.11 Aligned_cols=80 Identities=18% Similarity=0.417 Sum_probs=75.0
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCC-CccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK-PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~-~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.++|||+|||+.+|+++|+++|++||.|..|+|++++.++. ++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46999999999999999999999999999999999987766 89999999999999999999988 89999999999996
Q ss_pred cC
Q 016219 325 DG 326 (393)
Q Consensus 325 ~~ 326 (393)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 102
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=136.06 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=73.8
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecC-CCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK-ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~-~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
.....++|||+|||+.+++++|+++|+.|| |..|+|++++ .+|+++|||||+|.+.++|.+|+ .|+ ..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345568999999999999999999999999 9999999998 68999999999999999999999 788 8999999999
Q ss_pred EEcccCC
Q 016219 321 QRAIDGP 327 (393)
Q Consensus 321 ~~a~~~~ 327 (393)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 103
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.2e-18 Score=130.71 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=75.6
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+++++|+.+|++||.|..|+|+++ +|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45579999999999999999999999999999999974 78999999999999999999999998 8899999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76543
No 104
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.2e-18 Score=134.61 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=76.3
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++ +|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34566899999999999999999999999999999999998 99999999999999999999999988 89999999999
Q ss_pred Ecc
Q 016219 322 RAI 324 (393)
Q Consensus 322 ~a~ 324 (393)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 105
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=2e-19 Score=144.66 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=71.7
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+++|+++|+++|++|| |+.|+|++|+. |+++|||||+|.+.++|.+|| .++ ..|.||.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 77999999975 999999999999999999999 667 8999999999998
Q ss_pred ccC
Q 016219 324 IDG 326 (393)
Q Consensus 324 ~~~ 326 (393)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 106
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=133.20 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|+.|| |+.|+|++++ +|+++|||||+|.+.++|.+||. +| ..|.||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34557999999999999999999999999 5599999997 89999999999999999999996 56 899999999999
Q ss_pred cccC
Q 016219 323 AIDG 326 (393)
Q Consensus 323 a~~~ 326 (393)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7643
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.7e-19 Score=132.97 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred cccceeeecCCCC-CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEE
Q 016219 245 YTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (393)
Q Consensus 245 ~~~~~lfV~nLp~-~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V 320 (393)
.+.++|||+|||+ .+|+++|+.+|++||.|..|+|+++ +|||||+|.+.++|..|+..|+ ..|.||+|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3567999999999 9999999999999999999999865 6899999999999999999987 3599999999
Q ss_pred EEcccCC
Q 016219 321 QRAIDGP 327 (393)
Q Consensus 321 ~~a~~~~ 327 (393)
.||....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9997543
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=130.56 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=70.3
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-C--ccCCeEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHILN 319 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~--~~~G~~l~ 319 (393)
...+.++|||+|||+.+|+++|+.+|++||.|..|+|++ +||||||+|.+.++|.+|+..|+ . .|.||+|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345667999999999999999999999999999999985 38999999999999999999998 4 48899999
Q ss_pred EEEcccC
Q 016219 320 CQRAIDG 326 (393)
Q Consensus 320 V~~a~~~ 326 (393)
|.|+..+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998654
No 109
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=3.8e-19 Score=128.12 Aligned_cols=75 Identities=29% Similarity=0.527 Sum_probs=71.7
Q ss_pred eeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 249 ~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
+|||+|||+.+|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+...+..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998668999999999885
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=130.96 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=71.4
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILN 319 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~ 319 (393)
...+.++|||+|||+.+|+++|+.+|++||.|..|+|+++ ||||||+|.+.++|.+|+..|+ ..|.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3445679999999999999999999999999999999864 8999999999999999999874 579999999
Q ss_pred EEEcccCCC
Q 016219 320 CQRAIDGPK 328 (393)
Q Consensus 320 V~~a~~~~~ 328 (393)
|.|+..+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999976543
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=5.1e-19 Score=133.66 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=74.9
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+|+++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999988 89999999999975
Q ss_pred c
Q 016219 325 D 325 (393)
Q Consensus 325 ~ 325 (393)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.2e-19 Score=134.23 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=73.0
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.+ |.+|+..|| ..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999999999 8899999999999765
Q ss_pred CCC
Q 016219 327 PKP 329 (393)
Q Consensus 327 ~~~ 329 (393)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=1.5e-18 Score=144.95 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=78.8
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|++||.|..|.|++++.+|.++|||||+|.+.++|.+||..|| ..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred cccCCCC
Q 016219 323 AIDGPKP 329 (393)
Q Consensus 323 a~~~~~~ 329 (393)
+.++...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9876554
No 114
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=132.25 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=74.5
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|+. ++.++|||||+|.+.++|.+||..|| ..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344568999999999999999999999999999999965 45689999999999999999999998 89999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9976543
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=134.28 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=72.1
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V 320 (393)
..+.++|||+|||+.+|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345679999999999999999999999999999999875 8999999999999999999886 4799999999
Q ss_pred EEcccCCCC
Q 016219 321 QRAIDGPKP 329 (393)
Q Consensus 321 ~~a~~~~~~ 329 (393)
.|+..+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999765443
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1e-18 Score=126.30 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=68.5
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.+..|||+||++.+|+++|+++|.+||+|..++|.. +||||||+|.+.++|.+|++.|| ..+.||+|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999965 59999999999999999999999 89999999999984
No 117
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-19 Score=139.58 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=75.8
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCe-eEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEI-EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I-~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
....++|||+|||+.+|+++|+++|+.||.| ..|+|++++ +|+++|||||+|.+.++|.+||.. + ..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3455799999999999999999999999999 899999998 999999999999999999999999 6 89999999999
Q ss_pred EcccCC
Q 016219 322 RAIDGP 327 (393)
Q Consensus 322 ~a~~~~ 327 (393)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997653
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-19 Score=137.20 Aligned_cols=83 Identities=18% Similarity=0.337 Sum_probs=77.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|| .|| ..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 777 889999999999
Q ss_pred cccCC
Q 016219 323 AIDGP 327 (393)
Q Consensus 323 a~~~~ 327 (393)
+.++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 97653
No 119
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=130.91 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=73.5
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeE-EeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~-v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+++|+.||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||...+..|.||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 44579999999999999999999999999997 899888 7999999999999999999999999338999999999998
Q ss_pred cc
Q 016219 324 ID 325 (393)
Q Consensus 324 ~~ 325 (393)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-19 Score=132.42 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=74.1
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+++++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999 88999998887653
No 121
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=129.85 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=70.7
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~V 320 (393)
..+.++|||+|||+.+++++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|+ ..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999853 8999999999999999999886 4599999999
Q ss_pred EEcccCCC
Q 016219 321 QRAIDGPK 328 (393)
Q Consensus 321 ~~a~~~~~ 328 (393)
.|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99976543
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=135.15 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=75.7
Q ss_pred cccceeeecCCCCCCcHHHHH---HHHhcCCCeeEEeeeecCCCC---CCccEEEEEecCHHHHHHHHHcCC-CccCCeE
Q 016219 245 YTQRKIFVSNVGSELEPQKLL---AFFSKYGEIEEGPLGIDKATG---KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~---~~F~~~G~I~~v~i~~d~~~g---~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~ 317 (393)
...++|||+|||+.+++++|+ ++|++||.|..|+|++++.++ +++|||||+|.+.++|.+||..|| ..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 999999999999999887654 566999999999999999999999 8899999
Q ss_pred EEEEEcccCC
Q 016219 318 LNCQRAIDGP 327 (393)
Q Consensus 318 l~V~~a~~~~ 327 (393)
|+|.||.+++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 123
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=138.91 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=76.0
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred Ec
Q 016219 322 RA 323 (393)
Q Consensus 322 ~a 323 (393)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 124
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=131.90 Aligned_cols=88 Identities=27% Similarity=0.581 Sum_probs=76.7
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 124 ~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
.......++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+||..++..+.|+.|.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 34455678999999999999999999999999999999999998999999999999999999999999987799999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99875543
No 125
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=5.7e-18 Score=134.53 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=79.0
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+++|+.||.|..|+|++++ +|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999998 99999999999999999999999988 78999999999
Q ss_pred EcccCCCC
Q 016219 322 RAIDGPKP 329 (393)
Q Consensus 322 ~a~~~~~~ 329 (393)
+|......
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99765443
No 126
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=126.54 Aligned_cols=82 Identities=30% Similarity=0.510 Sum_probs=74.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999987754 89999999998
Q ss_pred cCC
Q 016219 207 SIG 209 (393)
Q Consensus 207 ~~~ 209 (393)
...
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 127
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=130.72 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
....++|||+|||+++|+++|+++|++||+|.+|+|++++. |+++|||||+|.+.++|.+||...+..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999999986 99999999999999999999994446699999999986
Q ss_pred c
Q 016219 207 S 207 (393)
Q Consensus 207 ~ 207 (393)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=130.07 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=73.2
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.| +|+.+ .+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34456899999999999999999999999987 56666 689999999999999999999999999 88999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9976643
No 129
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=132.27 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=74.1
Q ss_pred cccceeeecCCCCCC------cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCe-
Q 016219 245 YTQRKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH- 316 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~------t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~- 316 (393)
...++|||+|||+.+ |+++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|| ..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345799999999999 889999999999999999998 4689999999999999999999999999 889998
Q ss_pred EEEEEEcccCC
Q 016219 317 ILNCQRAIDGP 327 (393)
Q Consensus 317 ~l~V~~a~~~~ 327 (393)
.|+|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999987543
No 130
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=127.30 Aligned_cols=85 Identities=25% Similarity=0.398 Sum_probs=78.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999999989999999999999999999999888865 8999999999
Q ss_pred ccCCCC
Q 016219 206 ASIGPA 211 (393)
Q Consensus 206 ~~~~~~ 211 (393)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 875544
No 131
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=126.66 Aligned_cols=86 Identities=21% Similarity=0.386 Sum_probs=77.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 205 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+||...+..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999444568999999999
Q ss_pred ccCCCC
Q 016219 206 ASIGPA 211 (393)
Q Consensus 206 ~~~~~~ 211 (393)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 875544
No 132
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=130.74 Aligned_cols=86 Identities=36% Similarity=0.673 Sum_probs=80.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~ 204 (393)
..+...++|||+|||+.+++++|+.+|.+||.|..|+|++++.+++++|||||+|.+.++|.+||..+++.+.|+.|.|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 44566799999999999999999999999999999999999989999999999999999999999999998999999999
Q ss_pred EccCCC
Q 016219 205 LASIGP 210 (393)
Q Consensus 205 ~~~~~~ 210 (393)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 986543
No 133
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.2e-18 Score=130.06 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
.+|||+|||+.+++++|+++|++|| .|..|+|++++.+|+++|||||+|.+.++|.+|++.+++ .+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999999999999999999999999999998886 5899999998886
Q ss_pred CCCC
Q 016219 208 IGPA 211 (393)
Q Consensus 208 ~~~~ 211 (393)
..+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 5433
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=129.76 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=71.3
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
++|||+|||+.+|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+|+..|+ ..+.|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 69999999999999999999998 8999999999999876
Q ss_pred CC
Q 016219 327 PK 328 (393)
Q Consensus 327 ~~ 328 (393)
+.
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 135
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.7e-18 Score=131.94 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=74.6
Q ss_pred CCcCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC-e
Q 016219 128 PVHRKIFVHGLGW------DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN-R 199 (393)
Q Consensus 128 ~~~~~vfV~nLp~------~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g-~ 199 (393)
...++|||+|||+ .+++++|+++|++||.|..|+|++++.||+++|||||+|.+.++|.+|+..+++. +.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999999999999999999999999999999999988865 888 9
Q ss_pred eeEEEEcc
Q 016219 200 MTACQLAS 207 (393)
Q Consensus 200 ~i~v~~~~ 207 (393)
.|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999875
No 136
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-18 Score=132.74 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=75.6
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc--------
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-------- 313 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~-------- 313 (393)
.....++|||+|||+.+|+++|+.+|+.||.|..|+|++++ +|.++|||||+|.+.++|.+|+..|| ..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34456899999999999999999999999999999999998 99999999999999999999999998 677
Q ss_pred CCeEEEEEEcccC
Q 016219 314 EGHILNCQRAIDG 326 (393)
Q Consensus 314 ~G~~l~V~~a~~~ 326 (393)
.|++|.|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5888999998643
No 137
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=126.43 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=77.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC-KAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~-~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
...++|||+|||+.+++++|+.+|++||.|..| +|++++.++.++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 99999889999999999999999999999988865 8999999999
Q ss_pred ccCCCC
Q 016219 206 ASIGPA 211 (393)
Q Consensus 206 ~~~~~~ 211 (393)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 875543
No 138
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=125.51 Aligned_cols=77 Identities=22% Similarity=0.367 Sum_probs=70.8
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+.+|++||.|..|+|+ +|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 455799999999999999999999999999999997 7899999999999999999999 7899999999999
Q ss_pred ccCCCC
Q 016219 324 IDGPKP 329 (393)
Q Consensus 324 ~~~~~~ 329 (393)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 766543
No 139
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=128.42 Aligned_cols=86 Identities=26% Similarity=0.360 Sum_probs=78.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+||..+++. +.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4456789999999999999999999999999999999999989999999999999999999999988855 899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9875543
No 140
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=129.97 Aligned_cols=75 Identities=24% Similarity=0.370 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEEEccCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~~~~~~ 209 (393)
++|||+|||+.+++++|+.+|++||.|..|+|+++ ++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 78999999999999999999877 4589999999998765
Q ss_pred C
Q 016219 210 P 210 (393)
Q Consensus 210 ~ 210 (393)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=125.71 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=77.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4578999999999999999999999999999999999998999999999999999999999998775 489999999998
Q ss_pred cCCCC
Q 016219 207 SIGPA 211 (393)
Q Consensus 207 ~~~~~ 211 (393)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 65544
No 142
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=9.7e-18 Score=128.57 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=71.4
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 445799999999999999999999999999999986 5699999999999999999988 8899999999999
Q ss_pred ccCCCCCC
Q 016219 324 IDGPKPGK 331 (393)
Q Consensus 324 ~~~~~~~~ 331 (393)
.++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 87655433
No 143
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=135.06 Aligned_cols=85 Identities=16% Similarity=0.345 Sum_probs=74.4
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|+.||.|..|.+..+..+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999655444444489999999999999999999999999 889999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 976654
No 144
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1e-17 Score=123.01 Aligned_cols=79 Identities=28% Similarity=0.435 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~ 209 (393)
.+|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999987754 89999999998643
No 145
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2.3e-17 Score=129.15 Aligned_cols=88 Identities=31% Similarity=0.529 Sum_probs=79.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|.+||.|..|+|++++.+++++|||||+|.+.++|.+||..+++. +.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999988855 89999999
Q ss_pred EEccCCCCC
Q 016219 204 QLASIGPAT 212 (393)
Q Consensus 204 ~~~~~~~~~ 212 (393)
.++......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 998765443
No 146
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=7.9e-18 Score=124.28 Aligned_cols=80 Identities=25% Similarity=0.422 Sum_probs=74.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999999889999999999999999999999887755 8999999988
Q ss_pred c
Q 016219 206 A 206 (393)
Q Consensus 206 ~ 206 (393)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 147
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=134.48 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=72.5
Q ss_pred ccccceeeecCCCCCCcHHHHH----HHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~----~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l 318 (393)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+. .+++++|||||+|.+.++|..|+..|| ..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3446799999999999999876 699999999999885 368899999999999999999999999 89999999
Q ss_pred EEEEcccCC
Q 016219 319 NCQRAIDGP 327 (393)
Q Consensus 319 ~V~~a~~~~ 327 (393)
+|.|+..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997654
No 148
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=8.7e-19 Score=133.97 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=74.3
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+.+|+.||.|.. .+++++.+|.++|||||+|.+.++|.+||. |+ ..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34679999999999999999999999999988 777777889999999999999999999999 88 8999999999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 149
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=132.37 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=75.2
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++ +.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44566899999999999999999999999999999999884 4589999999999999999999988 88999999999
Q ss_pred EcccC
Q 016219 322 RAIDG 326 (393)
Q Consensus 322 ~a~~~ 326 (393)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 150
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=126.09 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=66.6
Q ss_pred ceeeecCCCCCC------cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCe-EEE
Q 016219 248 RKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-ILN 319 (393)
Q Consensus 248 ~~lfV~nLp~~~------t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~-~l~ 319 (393)
++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|| ..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999988 4689999999999999999999999999 889999 887
Q ss_pred E
Q 016219 320 C 320 (393)
Q Consensus 320 V 320 (393)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 151
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.1e-17 Score=130.91 Aligned_cols=87 Identities=23% Similarity=0.369 Sum_probs=78.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+||..+++. +.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999887754 89999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99875544
No 152
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=3.9e-18 Score=134.06 Aligned_cols=80 Identities=10% Similarity=0.097 Sum_probs=73.9
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCC---eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~---I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
....++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. ++ ..|.||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345679999999999999999999999999 89999999976 9999999999999999999999 67 889999999
Q ss_pred EEEccc
Q 016219 320 CQRAID 325 (393)
Q Consensus 320 V~~a~~ 325 (393)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999854
No 153
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2.9e-18 Score=137.46 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=73.7
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCC---eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~---I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
...++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. ++ ..|.||.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34579999999999999999999999999 89999999986 9999999999999999999999 88 8999999999
Q ss_pred EEccc
Q 016219 321 QRAID 325 (393)
Q Consensus 321 ~~a~~ 325 (393)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99853
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-18 Score=128.61 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=74.1
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|+.|+ .|++++++.++.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44568999999999999999999999773 67888888899999999999999999999999988 899999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 976543
No 155
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=127.64 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=71.0
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC-----eEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-----HIL 318 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G-----~~l 318 (393)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+ |||||+|.+.++|.+||..|| ..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44679999999999999999999999999999999865 899999999999999999999 78999 999
Q ss_pred EEEEcccCCC
Q 016219 319 NCQRAIDGPK 328 (393)
Q Consensus 319 ~V~~a~~~~~ 328 (393)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987543
No 156
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=127.21 Aligned_cols=87 Identities=25% Similarity=0.351 Sum_probs=79.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455678999999999999999999999999999999999998999999999999999999999998885 489999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99875543
No 157
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=131.18 Aligned_cols=79 Identities=19% Similarity=0.173 Sum_probs=70.5
Q ss_pred ccccceeeecCCCCC-CcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC---CccCCeEEE
Q 016219 244 EYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILN 319 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~-~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~---~~~~G~~l~ 319 (393)
..+.++|||+|||++ +|+++|+++|++||.|..|+|++ +||||||+|.+.++|.+|+..|+ ..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445689999999998 99999999999999999999974 38999999999999999999886 469999999
Q ss_pred EEEcccCCC
Q 016219 320 CQRAIDGPK 328 (393)
Q Consensus 320 V~~a~~~~~ 328 (393)
|.|+..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999975543
No 158
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=128.07 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=78.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345578999999999999999999999999999999999998999999999999999999999998775 5899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9875443
No 159
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=129.29 Aligned_cols=86 Identities=26% Similarity=0.438 Sum_probs=78.4
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 124 ~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
.......++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 445567789999999999999999999999999999999999989999999999999999999999987754 8999999
Q ss_pred EEEccCC
Q 016219 203 CQLASIG 209 (393)
Q Consensus 203 v~~~~~~ 209 (393)
|.++...
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9987543
No 160
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=136.40 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=75.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. || ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999999997777877899999999999999999999999 78 899999999999
Q ss_pred cccC
Q 016219 323 AIDG 326 (393)
Q Consensus 323 a~~~ 326 (393)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 161
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=130.20 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=70.7
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
...+|||+|||+++|+++|+++|+.| .|..|+|++|+. |+++|||||+|.+.++|.+||. ++ ..|.||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 34699999999999999999999999 899999999975 9999999999999999999994 66 89999999998875
Q ss_pred c
Q 016219 325 D 325 (393)
Q Consensus 325 ~ 325 (393)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 162
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=129.01 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=78.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC------Cc-cC
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ------KK-IG 197 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~------~~-~~ 197 (393)
......++|||+|||+.+++++|+.+|.+||.|..|+|++++.+++++|||||+|.+.++|.+||..++ +. +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445567899999999999999999999999999999999999999999999999999999999999886 54 89
Q ss_pred CeeeEEEEccCCCC
Q 016219 198 NRMTACQLASIGPA 211 (393)
Q Consensus 198 g~~i~v~~~~~~~~ 211 (393)
|+.|.|.++.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999875543
No 163
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-19 Score=141.60 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=78.1
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeE--------EeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--------GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~--------v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G 315 (393)
...++|||+|||+.+++++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34579999999999999999999999999999 9999998899999999999999999999999999 89999
Q ss_pred eEEEEEEcccCCC
Q 016219 316 HILNCQRAIDGPK 328 (393)
Q Consensus 316 ~~l~V~~a~~~~~ 328 (393)
+.|+|.++.+++.
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999976543
No 164
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=3.9e-18 Score=133.58 Aligned_cols=104 Identities=19% Similarity=0.370 Sum_probs=89.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
+...++|||+|||+.+++++|+.+|++||.|..|+|+++ +.++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999865 456999999999999999999987754 8999999998
Q ss_pred ccCCCCCCCCCCCcccccccccccccccccccccCCccccccceeeecCCCCCCcHHHHHHHHhcCCC
Q 016219 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE 273 (393)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~ 273 (393)
+..... .++++...++++|.++|++||.
T Consensus 82 a~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRA----------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHH----------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChh----------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 742111 1678888999999999999984
No 165
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=127.29 Aligned_cols=86 Identities=27% Similarity=0.502 Sum_probs=78.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999988775 4899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9875544
No 166
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=129.90 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=73.7
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345679999999999999999999999999999999875 8999999999999999999998 899999999999
Q ss_pred cccCCCCC
Q 016219 323 AIDGPKPG 330 (393)
Q Consensus 323 a~~~~~~~ 330 (393)
+.+++...
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 98765443
No 167
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=126.00 Aligned_cols=84 Identities=26% Similarity=0.421 Sum_probs=76.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV---SGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
...++|||+|||+.+++++|+++|++||.|..|+|++++. +++++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999886 6699999999999999999999988855 89999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99865443
No 168
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=128.27 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=77.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 345578999999999999999999999999999999999999999999999999999999999998775 4899999999
Q ss_pred EccCC
Q 016219 205 LASIG 209 (393)
Q Consensus 205 ~~~~~ 209 (393)
++...
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98643
No 169
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.4e-18 Score=122.68 Aligned_cols=76 Identities=30% Similarity=0.705 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..++..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999999997799999999886
No 170
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=125.80 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=76.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCee---
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE-DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRM--- 200 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~--- 200 (393)
.....++|||+|||+.+++++|+.+|++||.|. .|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345578999999999999999999999999999 9999999999999999999999999999999988865 89998
Q ss_pred -eEEEEccCC
Q 016219 201 -TACQLASIG 209 (393)
Q Consensus 201 -i~v~~~~~~ 209 (393)
|+|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999988643
No 171
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=127.88 Aligned_cols=86 Identities=23% Similarity=0.355 Sum_probs=78.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999999889999999999999999999999987755 899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9875544
No 172
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=124.14 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=70.3
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..|| ..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4456799999999999999999999999999999996 4599999999999999999998 889999999999
Q ss_pred cccCCC
Q 016219 323 AIDGPK 328 (393)
Q Consensus 323 a~~~~~ 328 (393)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 976644
No 173
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=125.59 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=76.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34455789999999999999999999999999999999999989999999999999999999999988755 89999999
Q ss_pred EEccC
Q 016219 204 QLASI 208 (393)
Q Consensus 204 ~~~~~ 208 (393)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98753
No 174
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=125.81 Aligned_cols=84 Identities=24% Similarity=0.466 Sum_probs=76.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 9999999999999999999999888755 899999999
Q ss_pred EccCCC
Q 016219 205 LASIGP 210 (393)
Q Consensus 205 ~~~~~~ 210 (393)
++...+
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 986443
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=4.2e-18 Score=130.42 Aligned_cols=83 Identities=24% Similarity=0.474 Sum_probs=75.9
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|++++ +|.++|||||+|.+.++|.+|+. .+..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3455799999999999999999999999999999999998 99999999999999999999999 348999999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87654
No 176
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.5e-17 Score=125.75 Aligned_cols=81 Identities=25% Similarity=0.508 Sum_probs=75.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 479999999999999999999999999999999999989999999999999999999999988755 8999999999865
Q ss_pred CC
Q 016219 209 GP 210 (393)
Q Consensus 209 ~~ 210 (393)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 177
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=125.95 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=71.5
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccC--CeEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE--GHILNC 320 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~--G~~l~V 320 (393)
..+.++|||+|||+.+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..|| ..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345579999999999999999999999999999999753 7899999999999999999998 8899 999999
Q ss_pred EEcccCCC
Q 016219 321 QRAIDGPK 328 (393)
Q Consensus 321 ~~a~~~~~ 328 (393)
.|+.+++.
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99976543
No 178
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=124.91 Aligned_cols=82 Identities=26% Similarity=0.446 Sum_probs=76.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
...+..++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999988865 89999999
Q ss_pred EEc
Q 016219 204 QLA 206 (393)
Q Consensus 204 ~~~ 206 (393)
.++
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 886
No 179
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=3.3e-17 Score=126.05 Aligned_cols=86 Identities=22% Similarity=0.403 Sum_probs=77.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC---eee
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN---RMT 201 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g---~~i 201 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++ +|+++|||||+|.+.++|.+||..+++. +.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34557899999999999999999999999999999999998 8999999999999999999999988865 677 999
Q ss_pred EEEEccCCCCC
Q 016219 202 ACQLASIGPAT 212 (393)
Q Consensus 202 ~v~~~~~~~~~ 212 (393)
.|.++......
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99998755443
No 180
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=126.89 Aligned_cols=87 Identities=20% Similarity=0.389 Sum_probs=78.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHcC-C-CccCCeee
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD-KVSGKSKGYGFILFKTRSGARKALKEP-Q-KKIGNRMT 201 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afv~f~~~~~a~~a~~~~-~-~~~~g~~i 201 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|+++ +.+++++|||||+|.+.++|.+||..+ + ..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999999 789999999999999999999999998 5 45899999
Q ss_pred EEEEccCCCC
Q 016219 202 ACQLASIGPA 211 (393)
Q Consensus 202 ~v~~~~~~~~ 211 (393)
.|.++.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999876544
No 181
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=6.8e-18 Score=130.32 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=69.8
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCC-CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G-~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...+|||+|||+++|+++|+++|++|| .|..+.|+. +.++|||||+|.+.++|.+||..|| ..|.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 356999999999999999999999999 899999863 3479999999999999999999999 8899999999998
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6543
No 182
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=125.52 Aligned_cols=82 Identities=27% Similarity=0.375 Sum_probs=75.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-c
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--------CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-K 195 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~ 195 (393)
......++|||+|||+.+++++|+.+|++||.|.. |+|++++.+|+++|||||+|.+.++|.+|+..+++ .
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44566789999999999999999999999999999 99999998999999999999999999999998775 4
Q ss_pred cCCeeeEEEEc
Q 016219 196 IGNRMTACQLA 206 (393)
Q Consensus 196 ~~g~~i~v~~~ 206 (393)
+.|+.|+|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 89999999886
No 183
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-17 Score=127.60 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=76.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+.+|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446899999999999999999999999999999999998 9999999999999999999999988865 89999999998
Q ss_pred cCCCC
Q 016219 207 SIGPA 211 (393)
Q Consensus 207 ~~~~~ 211 (393)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 75443
No 184
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=125.98 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=71.5
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345679999999999999999999999999999999854 8999999999999999999999 889999999999
Q ss_pred cccCC
Q 016219 323 AIDGP 327 (393)
Q Consensus 323 a~~~~ 327 (393)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97654
No 185
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=121.95 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=69.3
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcC-C-CccCCeEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP-H-KNFEGHILNCQ 321 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~-~-~~~~G~~l~V~ 321 (393)
....++|||+|||+.+++++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..| + ..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345679999999999999999999999999999999864 899999999999999999988 7 89999999999
Q ss_pred Ecc
Q 016219 322 RAI 324 (393)
Q Consensus 322 ~a~ 324 (393)
|+.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 186
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=123.49 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=69.6
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|++||.|..|+|+ ++||||+|.+.++|.+|+..|+ ..|.|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999999997 4599999999999999999998 889999999999
Q ss_pred cccCC
Q 016219 323 AIDGP 327 (393)
Q Consensus 323 a~~~~ 327 (393)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97653
No 187
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3.6e-17 Score=121.79 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=72.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+ .++ ..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999989999999999999999999999 666 458999999999854
No 188
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.3e-18 Score=126.90 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=70.0
Q ss_pred ccccceeeecCCCC-CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 244 EYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 244 ~~~~~~lfV~nLp~-~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
..+.++|||+|||+ .+|+++|+.+|++||.|..|+|. +|||||+|.+.++|.+|+..|+ ..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999998 99999999999999999999984 7999999999999999999988 88999999999
Q ss_pred EcccCCCCC
Q 016219 322 RAIDGPKPG 330 (393)
Q Consensus 322 ~a~~~~~~~ 330 (393)
++.++..+.
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998765543
No 189
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-18 Score=131.92 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=73.9
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCC---eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~---I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
....++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. ++ ..|.||.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345679999999999999999999999998 89999999987 9999999999999999999999 77 889999999
Q ss_pred EEEccc
Q 016219 320 CQRAID 325 (393)
Q Consensus 320 V~~a~~ 325 (393)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999864
No 190
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.5e-17 Score=127.00 Aligned_cols=87 Identities=22% Similarity=0.317 Sum_probs=78.5
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c---CCee
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---GNRM 200 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~---~g~~ 200 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. + .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34566789999999999999999999999999999999999989999999999999999999999988864 5 7899
Q ss_pred eEEEEccCCCC
Q 016219 201 TACQLASIGPA 211 (393)
Q Consensus 201 i~v~~~~~~~~ 211 (393)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999865443
No 191
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.1e-17 Score=124.11 Aligned_cols=86 Identities=26% Similarity=0.478 Sum_probs=77.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 205 (393)
.....++|||+|||+.+++++|+.+|.+||.|..|+|++++.+++++|||||+|.+.++|.+||.. ...+.|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 445678999999999999999999999999999999999998999999999999999999999995 3568999999999
Q ss_pred ccCCCCC
Q 016219 206 ASIGPAT 212 (393)
Q Consensus 206 ~~~~~~~ 212 (393)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 8765443
No 192
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=6.8e-18 Score=133.12 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=72.2
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCee--EEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~--~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~ 322 (393)
...++|||+|||+++|+++|+++|+.| .|. .|+|++|+. |+++|||||+|.+.++|.+||..++..|.||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 345789999999999999999999999 677 999999976 9999999999999999999999866899999999988
Q ss_pred ccc
Q 016219 323 AID 325 (393)
Q Consensus 323 a~~ 325 (393)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=8.1e-18 Score=129.78 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=69.8
Q ss_pred ceeeecCC----CCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecC----HHH----HHHHHH--cCC-Cc
Q 016219 248 RKIFVSNV----GSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT----VDA----AKKALE--EPH-KN 312 (393)
Q Consensus 248 ~~lfV~nL----p~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~----~~~----A~~Al~--~~~-~~ 312 (393)
+.|||+|| |+.+++..|+.+|+.||.|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 889988 777 89
Q ss_pred cCCeEEEEEEcc
Q 016219 313 FEGHILNCQRAI 324 (393)
Q Consensus 313 ~~G~~l~V~~a~ 324 (393)
|.||+|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999853
No 194
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=1.3e-17 Score=119.91 Aligned_cols=75 Identities=32% Similarity=0.621 Sum_probs=69.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
+|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++..+..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999995446699999999764
No 195
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=135.15 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=74.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
..++|||+|||+.+++++|+.+|++|| .|..|+|++++.+|+++|||||+|.+.++|.+||..+++. |.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999999999999999999999999999999998865 8999999998
Q ss_pred cc
Q 016219 206 AS 207 (393)
Q Consensus 206 ~~ 207 (393)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 196
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=123.68 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=70.4
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcC--CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~--G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
.....++|||+|||+.+|+++|+.+|++| |.|..|+++ +|||||+|.+.++|.+|+..|| ..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456899999999999999999999999 999999874 7899999999999999999998 889999999
Q ss_pred EEEcccCCC
Q 016219 320 CQRAIDGPK 328 (393)
Q Consensus 320 V~~a~~~~~ 328 (393)
|.|+.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999976553
No 197
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=124.69 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=70.5
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+.+|+.||.|. ++++. +.++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3457999999999999999999999999997 77765 3679999999999999999999999 8999999999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.+++
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 198
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=9.1e-18 Score=120.80 Aligned_cols=75 Identities=31% Similarity=0.515 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
+|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+...+..+.|+.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999998999999999999999999999998777799999998764
No 199
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=7.9e-17 Score=123.47 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=75.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .+++ .+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345578999999999999999999999997 999999999999999999999999999999999 6664 5899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9875443
No 200
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2.8e-17 Score=127.57 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=77.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999987754 89999999
Q ss_pred EEccCC
Q 016219 204 QLASIG 209 (393)
Q Consensus 204 ~~~~~~ 209 (393)
.++...
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998644
No 201
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=123.75 Aligned_cols=81 Identities=25% Similarity=0.374 Sum_probs=74.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+++|++||.|..|+|++++. ++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344568999999999999999999999999999999999984 99999999999999999999997775 4899999999
Q ss_pred Ecc
Q 016219 205 LAS 207 (393)
Q Consensus 205 ~~~ 207 (393)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 202
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=124.65 Aligned_cols=85 Identities=26% Similarity=0.403 Sum_probs=76.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|+++ ++.++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999999999998 8999999999999999999999987754 89999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99875544
No 203
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=127.25 Aligned_cols=86 Identities=28% Similarity=0.350 Sum_probs=78.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I 196 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~ 196 (393)
.....++|||+|||+.+++++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+||..+++. +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999998 6999999889999999999999999999999987754 8
Q ss_pred CCeeeEEEEccCCCC
Q 016219 197 GNRMTACQLASIGPA 211 (393)
Q Consensus 197 ~g~~i~v~~~~~~~~ 211 (393)
.|+.|.|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999875443
No 204
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=3.4e-17 Score=136.75 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=78.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+|.++|||||+|.+.++|.+||..+++. |.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999988755 89999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99875543
No 205
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=126.59 Aligned_cols=86 Identities=31% Similarity=0.520 Sum_probs=77.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 205 (393)
.....++|||+|||+.+++++|+.+|.+||.|..|+|++++.+++++|||||+|.+.++|.+||...+..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45667899999999999999999999999999999999999899999999999999999999999933458999999988
Q ss_pred ccCCCC
Q 016219 206 ASIGPA 211 (393)
Q Consensus 206 ~~~~~~ 211 (393)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 765443
No 206
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=3.6e-17 Score=123.79 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=69.7
Q ss_pred cccccceeeecCCCC-CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 243 SEYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~-~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
.....++|||+|||+ .+++++|+.+|+.||.|..|+|. +|||||+|.+.++|.+|+..|+ ..+.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344568999999998 99999999999999999999983 8999999999999999999998 7899999999
Q ss_pred EEcccCC
Q 016219 321 QRAIDGP 327 (393)
Q Consensus 321 ~~a~~~~ 327 (393)
.++..+.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9987543
No 207
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-17 Score=130.20 Aligned_cols=88 Identities=32% Similarity=0.493 Sum_probs=80.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999988865 89999999
Q ss_pred EEccCCCCC
Q 016219 204 QLASIGPAT 212 (393)
Q Consensus 204 ~~~~~~~~~ 212 (393)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 998765443
No 208
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=125.39 Aligned_cols=79 Identities=27% Similarity=0.494 Sum_probs=74.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 479999999999999999999999999999999999989999999999999999999999988855 8999999999864
No 209
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=121.35 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=73.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-cceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK-SKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
..++|||+|||+.+++++|+.+|++||.|..|+|++++.++. ++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 8999999999999999999987754 89999999988
Q ss_pred cC
Q 016219 207 SI 208 (393)
Q Consensus 207 ~~ 208 (393)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 210
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.1e-17 Score=126.78 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=73.4
Q ss_pred cccceeeecCCCCCCcHHHHH----HHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~----~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
.+.++|||+|||+.+++++|+ .+|++||.|..|+|++ +|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456799999999999999999 9999999999999873 57789999999999999999999988 889999999
Q ss_pred EEEcccCC
Q 016219 320 CQRAIDGP 327 (393)
Q Consensus 320 V~~a~~~~ 327 (393)
|.|+.+.+
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997654
No 211
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=127.21 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+|+++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999874 48999999999999999999999 88999999999997
Q ss_pred cCC
Q 016219 325 DGP 327 (393)
Q Consensus 325 ~~~ 327 (393)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 212
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=3.1e-17 Score=126.70 Aligned_cols=78 Identities=24% Similarity=0.436 Sum_probs=70.8
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+ +|||||+|.+.++|.+|+..|+ ..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999997 7999999999999999999988 88999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.+.+.
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9976543
No 213
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=123.95 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=75.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS-GKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v 203 (393)
.....++|||+|||+.+++++|+.+|.+|| |..|+|++++.+ ++++|||||+|.+.++|.+|| .++ ..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 334568999999999999999999999999 999999999987 999999999999999999999 666 4589999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99875544
No 214
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3.6e-17 Score=143.64 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=73.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~ 205 (393)
..++|||+|||+.+|+++|+++|++|| .|..|+|++++.+++++|||||+|.+.++|.+||..|++ .|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999998885 48999999999
Q ss_pred cc
Q 016219 206 AS 207 (393)
Q Consensus 206 ~~ 207 (393)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 215
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=126.64 Aligned_cols=83 Identities=28% Similarity=0.571 Sum_probs=76.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEccCC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~ 209 (393)
.++|||+|||+.+++++|+.+|.+||.|..|+|++++.+++++|||||+|.+.++|.+||...+..|.|+.|.|.++...
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 47999999999999999999999999999999999998999999999999999999999999445699999999998755
Q ss_pred CCC
Q 016219 210 PAT 212 (393)
Q Consensus 210 ~~~ 212 (393)
...
T Consensus 107 ~~~ 109 (116)
T 1x4b_A 107 EES 109 (116)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 216
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3.6e-17 Score=128.67 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=75.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999988865 89999999
Q ss_pred EEc
Q 016219 204 QLA 206 (393)
Q Consensus 204 ~~~ 206 (393)
.++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 876
No 217
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=123.75 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=72.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 205 (393)
.....++|||+|||+.+|+++|+++|++||.| .|+|++++ +++++|||||+|.+.++|.+||...+..|.||.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 99999998 99999999999999999999997544568999999988
Q ss_pred ccCC
Q 016219 206 ASIG 209 (393)
Q Consensus 206 ~~~~ 209 (393)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7643
No 218
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=3.3e-17 Score=128.25 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=73.0
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+|+++|+.+|++||.|..|+|+++ +.++|||||+|.+.++|.+|+..|| ..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34579999999999999999999999999999999865 5569999999999999999999988 8999999999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7543
No 219
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=124.96 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+.+|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988766 3478899999999999999999999999 899999999999
Q ss_pred cccCC
Q 016219 323 AIDGP 327 (393)
Q Consensus 323 a~~~~ 327 (393)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97654
No 220
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.6e-17 Score=123.41 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=74.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED-CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+++|.+||.|.. |+|+++ .+|+++|||||+|.+.++|.+||...+..+.||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345789999999999999999999999999987 889888 699999999999999999999999955669999999998
Q ss_pred ccCCC
Q 016219 206 ASIGP 210 (393)
Q Consensus 206 ~~~~~ 210 (393)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 76443
No 221
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=123.94 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=76.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-c-cCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQ-YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-K-IGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~-~~g~~i~v 203 (393)
....++|||+|||+.+++++|+.+|++ ||.|..|+|++++ +|+++|||||+|.+.++|.+|+..+++ . +.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 445689999999999999999999999 9999999999999 999999999999999999999998885 5 89999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 98865443
No 222
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=131.19 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=72.0
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCe----eEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEI----EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNC 320 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I----~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V 320 (393)
....+|||+|||+++|+++|+++|++||.| ..|+|+++ .+|+++|||||+|.+.++|.+||...+..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 345799999999999999999999999975 68999998 4899999999999999999999998448899999999
Q ss_pred EEccc
Q 016219 321 QRAID 325 (393)
Q Consensus 321 ~~a~~ 325 (393)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88743
No 223
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-18 Score=124.69 Aligned_cols=79 Identities=29% Similarity=0.481 Sum_probs=72.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45689999999999999999999999999999999999989999999999999999999999988854 78888876554
No 224
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=7.8e-17 Score=124.43 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=75.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|.+||.|..|+|++++ +|+++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999999999999 9999999999999999999999987754 89999999
Q ss_pred EEcc
Q 016219 204 QLAS 207 (393)
Q Consensus 204 ~~~~ 207 (393)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 225
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=123.59 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+.+|.+||.|..++++.++.+|+++|||||+|.+.++|.+|+..+++ .+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999998885 48999999999
Q ss_pred ccC
Q 016219 206 ASI 208 (393)
Q Consensus 206 ~~~ 208 (393)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 753
No 226
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.2e-17 Score=126.14 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=69.5
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|||+.+++++|+.+|+.||.|..|+|+ +++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 345799999999999999999999999999999997 358999999999999999999998 8999999999998
Q ss_pred cc
Q 016219 324 ID 325 (393)
Q Consensus 324 ~~ 325 (393)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 227
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=124.13 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=70.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC---CccCCeeeE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTA 202 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~~g~~i~ 202 (393)
.+...++|||+|||+.+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..++ ..+.|+.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4566789999999999999999999999999999999864 6899999999999999999764 358999999
Q ss_pred EEEccCCCC
Q 016219 203 CQLASIGPA 211 (393)
Q Consensus 203 v~~~~~~~~ 211 (393)
|.++.....
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999865444
No 228
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=4.3e-17 Score=142.14 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=76.2
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|.+||..++ ..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 345799999999999999999999999999999999999999999999999999999999999999 8899999999998
Q ss_pred ccC
Q 016219 324 IDG 326 (393)
Q Consensus 324 ~~~ 326 (393)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 229
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=118.62 Aligned_cols=82 Identities=17% Similarity=0.357 Sum_probs=74.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+||. +++. +.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 699999999999999999999999 7755 899999999
Q ss_pred EccCCC
Q 016219 205 LASIGP 210 (393)
Q Consensus 205 ~~~~~~ 210 (393)
++...+
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 986543
No 230
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=4e-17 Score=121.37 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=63.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEc
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a 323 (393)
.....+|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.++ ......+.|+.|.|.+|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEc
Confidence 445679999999999999999999999999999999874 699999999999999843 22224577999999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 231
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=121.59 Aligned_cols=85 Identities=21% Similarity=0.376 Sum_probs=75.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++. .++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3455678999999999999999999999999999999999853 36899999999999999999987755 89999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99875443
No 232
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=127.24 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=74.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEI-EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~ 204 (393)
.....++|||+|||+.+|+++|+++|+.||.| ..|+|++++ +|+++|||||+|.+.++|.+||...+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 44567899999999999999999999999999 899999999 9999999999999999999999994456899999999
Q ss_pred Ecc
Q 016219 205 LAS 207 (393)
Q Consensus 205 ~~~ 207 (393)
++.
T Consensus 90 ~a~ 92 (114)
T 2cpy_A 90 VVT 92 (114)
T ss_dssp EEC
T ss_pred ECC
Confidence 985
No 233
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=4.1e-17 Score=130.13 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=77.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..+++. |.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999987754 89999999
Q ss_pred EEccCC
Q 016219 204 QLASIG 209 (393)
Q Consensus 204 ~~~~~~ 209 (393)
.++...
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 887643
No 234
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=7.2e-17 Score=128.53 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=78.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|.+||.|..|+|+.++.++.++|||||+|.+.++|.+||..+++ .|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999998775 589999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99875444
No 235
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=121.13 Aligned_cols=87 Identities=21% Similarity=0.395 Sum_probs=76.6
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeE
Q 016219 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (393)
Q Consensus 124 ~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~ 202 (393)
.......++|||+|||+.+++++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+|+..+++ .+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456679999999999999999999999999999999998863 3899999999999999999998775 48999999
Q ss_pred EEEccCCCCC
Q 016219 203 CQLASIGPAT 212 (393)
Q Consensus 203 v~~~~~~~~~ 212 (393)
|.++......
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9998765443
No 236
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=123.39 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=76.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHHcCC---CccCCeee
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAV-CDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMT 201 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~-i~~~~i~-~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~~g~~i 201 (393)
+...++|||+|||+.+++++|+.+|.+||. |..|+|+ .++.+|+++|||||+|.+.++|.+|+..++ ..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 445789999999999999999999999998 9999998 788889999999999999999999999985 35899999
Q ss_pred EEEEccCCCC
Q 016219 202 ACQLASIGPA 211 (393)
Q Consensus 202 ~v~~~~~~~~ 211 (393)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999875443
No 237
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.7e-17 Score=124.15 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=73.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~ 206 (393)
+..++|||+|||+.+++++|+++|.+||.|..++++.++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3458999999999999999999999999999999999998999999999999999999999998775 489999999887
Q ss_pred c
Q 016219 207 S 207 (393)
Q Consensus 207 ~ 207 (393)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 238
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-16 Score=123.32 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=75.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+++|.+||.|..|+|++++ +++++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34557899999999999999999999999999999999998 6999999999999999999999987754 899999999
Q ss_pred EccCC
Q 016219 205 LASIG 209 (393)
Q Consensus 205 ~~~~~ 209 (393)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98643
No 239
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=7.9e-17 Score=125.03 Aligned_cols=74 Identities=20% Similarity=0.432 Sum_probs=68.5
Q ss_pred ccceeeecCCCCC-CcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 246 TQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 246 ~~~~lfV~nLp~~-~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
..++|||+|||+. +|+++|+++|++||.|..|+| ++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999998 48999999999999999999998 8999999999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 240
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.7e-17 Score=123.93 Aligned_cols=80 Identities=24% Similarity=0.444 Sum_probs=71.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEccCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~~~ 209 (393)
++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.+ |.+|+..+++. +.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999998865 89999999998654
Q ss_pred CC
Q 016219 210 PA 211 (393)
Q Consensus 210 ~~ 211 (393)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 241
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=120.35 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=67.7
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+|+++|+.+|+.||.|..| +.++.+|+ ||||+|.+.++|.+||. |+ ..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34699999999999999999999999999987 56666665 99999999999999999 88 89999999999886
Q ss_pred cCC
Q 016219 325 DGP 327 (393)
Q Consensus 325 ~~~ 327 (393)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 242
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=120.75 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 128 PVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
...++|||+|||+.+++++|+ .+|++||.|..|+|++++.+ +|||||+|.+.++|.+|+..+++. +.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999998755 889999999999999999988865 8999999
Q ss_pred EEEccCCC
Q 016219 203 CQLASIGP 210 (393)
Q Consensus 203 v~~~~~~~ 210 (393)
|.++...+
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99986443
No 243
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=131.94 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=76.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-----ccCC
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-----KIGN 198 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-----~~~g 198 (393)
.....++|||+|||+.+|+++|+++|.+||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..+++ .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999999999999999999999 99999999886 6899
Q ss_pred eeeEEEEccCC
Q 016219 199 RMTACQLASIG 209 (393)
Q Consensus 199 ~~i~v~~~~~~ 209 (393)
+.|.|.++...
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998643
No 244
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=6.6e-17 Score=136.15 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=77.6
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998 99999999999999999999999999 89999999999
Q ss_pred EcccC
Q 016219 322 RAIDG 326 (393)
Q Consensus 322 ~a~~~ 326 (393)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98654
No 245
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.6e-16 Score=119.09 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=74.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+.+|++||.|..|+|+++ +++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999984 789999999999999999999998775 48999999999
Q ss_pred ccCCC
Q 016219 206 ASIGP 210 (393)
Q Consensus 206 ~~~~~ 210 (393)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 86443
No 246
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=2.1e-16 Score=125.45 Aligned_cols=79 Identities=25% Similarity=0.477 Sum_probs=73.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEccC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~~ 208 (393)
.++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+ .+++ .+.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999889999999999999999999999 6664 58999999999864
Q ss_pred C
Q 016219 209 G 209 (393)
Q Consensus 209 ~ 209 (393)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 247
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.7e-17 Score=124.03 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=69.2
Q ss_pred cccceeee--cCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc-----CCe
Q 016219 245 YTQRKIFV--SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-----EGH 316 (393)
Q Consensus 245 ~~~~~lfV--~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~-----~G~ 316 (393)
.+.++||| +||++.+|+++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|| ..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 779999999999999999999999988642 8999999999999999999999 666 689
Q ss_pred EEEEEEcccCCC
Q 016219 317 ILNCQRAIDGPK 328 (393)
Q Consensus 317 ~l~V~~a~~~~~ 328 (393)
+|.|.|+...+-
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999975543
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.3e-17 Score=126.08 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=72.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEcc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 207 (393)
.++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|| .+++ .|.|+.|.|.++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 479999999999999999999999999999999999989999999999999999999999 6664 5899999999875
No 249
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=118.55 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=65.1
Q ss_pred cCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCe-ee
Q 016219 130 HRKIFVHGLGWDT------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNR-MT 201 (393)
Q Consensus 130 ~~~vfV~nLp~~~------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~-~i 201 (393)
+++|||+|||+.+ ++++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..+++. +.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 358999999999999999999999998865 7888 77
Q ss_pred EE
Q 016219 202 AC 203 (393)
Q Consensus 202 ~v 203 (393)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 250
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=123.48 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=72.3
Q ss_pred CCCCcCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC
Q 016219 126 EDPVHRKIFVHGLGWDT------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN 198 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g 198 (393)
.....++|||+|||+.+ |+++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..+++. +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999988 358999999999999999999999998866 899
Q ss_pred e-eeEEEEcc
Q 016219 199 R-MTACQLAS 207 (393)
Q Consensus 199 ~-~i~v~~~~ 207 (393)
+ .|.|.++.
T Consensus 89 ~~~l~V~~a~ 98 (105)
T 2nlw_A 89 QHTFRVNLFT 98 (105)
T ss_dssp TCEEEEECSC
T ss_pred CceEEEEEcc
Confidence 8 99999875
No 251
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=124.21 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK-VSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v 203 (393)
.....++|||+|||+.+++++|+.+|++|| |..|+|++++ .+|+++|||||+|.+.++|.+|+ .++ ..+.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345578999999999999999999999999 9999999998 58999999999999999999999 666 4589999999
Q ss_pred EEccC
Q 016219 204 QLASI 208 (393)
Q Consensus 204 ~~~~~ 208 (393)
.++..
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98854
No 252
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=119.50 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=68.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc---cCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK---IGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~---~~g~~i~v 203 (393)
.+.+++|||+|||+.+|+++|+++|++||.|.+|+|++ +||||||+|.+.++|.+|+..+++. +.||.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34578999999999999999999999999999999874 4789999999999999999988753 78999999
Q ss_pred EEccCC
Q 016219 204 QLASIG 209 (393)
Q Consensus 204 ~~~~~~ 209 (393)
.++...
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998643
No 253
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=1.1e-16 Score=128.20 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=73.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCee
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~ 200 (393)
......++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+||. ++ ..+.||.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999999 89999999986 9999999999999999999999 66 4589999
Q ss_pred eEEEEcc
Q 016219 201 TACQLAS 207 (393)
Q Consensus 201 i~v~~~~ 207 (393)
|.|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998874
No 254
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2.1e-16 Score=125.37 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=77.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++ +|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999998 9999999999999999999999987765 899999999
Q ss_pred EccCCCCC
Q 016219 205 LASIGPAT 212 (393)
Q Consensus 205 ~~~~~~~~ 212 (393)
++......
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 98754443
No 255
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=2.3e-16 Score=130.79 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=77.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+.+|++||.|..|+|++++.+|+++|||||+|.+.++|.+||..+++. +.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999999989999999999999999999999988865 8999999999
Q ss_pred ccCC
Q 016219 206 ASIG 209 (393)
Q Consensus 206 ~~~~ 209 (393)
+...
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 8654
No 256
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.2e-16 Score=115.40 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=67.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
.+..||||||++.+|+++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.||+. +.||.|+|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 457899999999999999999999999999999864 6899999999999999999999865 899999999873
No 257
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-16 Score=117.77 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=68.8
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|| .+|+++|+.+|++||.|..|+|. .++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35579999996 89999999999999999999984 458999999999999999999999 8899999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.+++.
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76644
No 258
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=3.9e-16 Score=129.07 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=78.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++.++.++|||||+|.+.++|.+||..+++. |.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3446789999999999999999999999999999999999999999999999999999999999988754 899999999
Q ss_pred EccCCC
Q 016219 205 LASIGP 210 (393)
Q Consensus 205 ~~~~~~ 210 (393)
++....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 987543
No 259
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=9.1e-17 Score=129.23 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=78.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+||..+++. +.|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33445689999999999999999999999999999999999989999999999999999999999988854 89999999
Q ss_pred EEccCCC
Q 016219 204 QLASIGP 210 (393)
Q Consensus 204 ~~~~~~~ 210 (393)
.++....
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9986543
No 260
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=134.32 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=72.5
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEe--eeec---CCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP--LGID---KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~--i~~d---~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~ 317 (393)
..+.++|||+|||+.+|+++|+.+|+.||.|..|. ++.+ ..+|+++|||||+|.+.++|.+||..|| ..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44567999999999999999999999999998752 1111 3579999999999999999999999999 8999999
Q ss_pred EEEEEcccCC
Q 016219 318 LNCQRAIDGP 327 (393)
Q Consensus 318 l~V~~a~~~~ 327 (393)
|.|.|+.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 261
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.4e-16 Score=125.12 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=72.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
....++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||...+..|.||.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 445789999999999999999999999999 89999999985 99999999999999999999994445589999999
Q ss_pred EEcc
Q 016219 204 QLAS 207 (393)
Q Consensus 204 ~~~~ 207 (393)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9875
No 262
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=128.72 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=75.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999988865 89999999
Q ss_pred EEc
Q 016219 204 QLA 206 (393)
Q Consensus 204 ~~~ 206 (393)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 864
No 263
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.9e-16 Score=136.07 Aligned_cols=85 Identities=21% Similarity=0.429 Sum_probs=77.7
Q ss_pred cccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEE
Q 016219 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~ 322 (393)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+||...+..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34456899999999999999999999999999999999999999999999999999999999999966899999999999
Q ss_pred cccCC
Q 016219 323 AIDGP 327 (393)
Q Consensus 323 a~~~~ 327 (393)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 264
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=1.1e-16 Score=126.21 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=72.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
.....++|||+|||+.+|+++|+++|+.| .|. .|+|++++. |+++|||||+|.+.++|.+||..++..|.||.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34557899999999999999999999999 677 999999986 99999999999999999999998777799999999
Q ss_pred EEcc
Q 016219 204 QLAS 207 (393)
Q Consensus 204 ~~~~ 207 (393)
.++.
T Consensus 116 ~~a~ 119 (126)
T 2hgm_A 116 FKSS 119 (126)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 265
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=1.6e-16 Score=132.90 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=76.7
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 4799999999999999999999999999999999999899999999999999999999999888 889999999999875
Q ss_pred CC
Q 016219 326 GP 327 (393)
Q Consensus 326 ~~ 327 (393)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 266
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2e-16 Score=132.10 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=76.5
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEccc
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~ 325 (393)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4699999999999999999999999999999999998899999999999999999999999888 899999999999875
Q ss_pred CC
Q 016219 326 GP 327 (393)
Q Consensus 326 ~~ 327 (393)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 267
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.6e-17 Score=119.76 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=66.0
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
..++|||+|||+.+|+++|+.+|++||.|..|+|+++ ++|||||+|.+.++|.+|+.. ...+.|++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 3479999999999999999999999999999999864 699999999999999864332 2567999999999876
Q ss_pred CCC
Q 016219 326 GPK 328 (393)
Q Consensus 326 ~~~ 328 (393)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 268
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=123.65 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=71.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC---ccCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK---KIGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---~~~g~~i~v 203 (393)
.+..++|||+|||+.+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..+++ .+.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999865 78999999999999999998763 589999999
Q ss_pred EEccCCCCC
Q 016219 204 QLASIGPAT 212 (393)
Q Consensus 204 ~~~~~~~~~ 212 (393)
.++......
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 998654443
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=119.90 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=67.1
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCC-eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC--CccCCeEEEEE
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQ 321 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~-I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~--~~~~G~~l~V~ 321 (393)
...++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|| ..|.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34579999999999999999999999999 5555552 38999999999999999999887 58999999999
Q ss_pred EcccCCC
Q 016219 322 RAIDGPK 328 (393)
Q Consensus 322 ~a~~~~~ 328 (393)
|+.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9976543
No 270
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=124.47 Aligned_cols=77 Identities=16% Similarity=0.400 Sum_probs=69.3
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCC---CCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT---GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~---g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~ 322 (393)
..++|||+|||+.+|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+||..|+ .++|+.|.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEecc
Confidence 457999999999999999999999999999 888888777 7999999999999999999999985 47899888876
Q ss_pred cc
Q 016219 323 AI 324 (393)
Q Consensus 323 a~ 324 (393)
+.
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 271
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=121.60 Aligned_cols=86 Identities=20% Similarity=0.393 Sum_probs=75.8
Q ss_pred cccCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCee
Q 016219 122 QVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRM 200 (393)
Q Consensus 122 ~~~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~ 200 (393)
.........++|||+|||+.+++++|+.+|++||.|..|+|++++ +.++|||||+|.+.++|.+|+..+++. +.|+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334556678999999999999999999999999999999999885 458999999999999999999987754 89999
Q ss_pred eEEEEccCC
Q 016219 201 TACQLASIG 209 (393)
Q Consensus 201 i~v~~~~~~ 209 (393)
|.|.++...
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998643
No 272
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=125.20 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=71.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEI----EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i----~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
...++|||+|||+++|+++|+++|++||.| ..|+|+++. +|+++|||||+|.+.++|.+||...+..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346799999999999999999999999985 689999985 899999999999999999999998556689999998
Q ss_pred EEcc
Q 016219 204 QLAS 207 (393)
Q Consensus 204 ~~~~ 207 (393)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 273
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=114.94 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=63.8
Q ss_pred eeeecCCCCCCcHHH----HHHHHhcC-CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 249 KIFVSNVGSELEPQK----LLAFFSKY-GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 249 ~lfV~nLp~~~t~~~----L~~~F~~~-G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
.|||+|||+.+++++ |+++|+.| |.|..| +| |||||.|.+.++|.+|++.|+ ..|.||+|+|.|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 499999999999988 55899999 599988 33 999999999999999999999 899999999999
Q ss_pred cccCCCC
Q 016219 323 AIDGPKP 329 (393)
Q Consensus 323 a~~~~~~ 329 (393)
|..++..
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9876653
No 274
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=2.8e-16 Score=134.32 Aligned_cols=79 Identities=15% Similarity=0.263 Sum_probs=74.3
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
..++|||+|||+.+|+++|+++|++||.|..|+|+++. +|.++|||||+|.+.++|.+|+..++..|.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45799999999999999999999999999999999986 59999999999999999999999999999999999999764
No 275
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=121.23 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=69.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
.++|||+|||+.+++++|+++|+.| .|..|+|++++ .|+++|||||+|.+.++|.+||...+..|.||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 89999999998 4999999999999999999999654456899999998874
No 276
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=1.6e-16 Score=121.44 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
...++|||+|||+.+++++|+.+|++||.|..|+|++++ +|+++|||||+|.+.++|.+|+. .+..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 346899999999999999999999999999999999998 99999999999999999999999 5556899999998886
Q ss_pred CCC
Q 016219 208 IGP 210 (393)
Q Consensus 208 ~~~ 210 (393)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 443
No 277
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=6.8e-16 Score=126.15 Aligned_cols=76 Identities=18% Similarity=0.092 Sum_probs=68.7
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEcc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAI 324 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a~ 324 (393)
.+|||+||++.+|+++|+++|++||.|..|+|+.. .++|||||+|.+.++|.+|+..|+ ..|.| ++|+|.|+.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 57999999999999999999999999999999753 258999999999999999999999 77855 999999997
Q ss_pred cCC
Q 016219 325 DGP 327 (393)
Q Consensus 325 ~~~ 327 (393)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 653
No 278
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=120.44 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC---ccCCeeeEE
Q 016219 128 PVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK---KIGNRMTAC 203 (393)
Q Consensus 128 ~~~~~vfV~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---~~~g~~i~v 203 (393)
..+++|||+|||+ .+++++|+.+|++||.|.+|+|+++ +|||||+|.+.++|.+|+..+++ .+.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999864 47999999999999999998773 389999999
Q ss_pred EEccCCC
Q 016219 204 QLASIGP 210 (393)
Q Consensus 204 ~~~~~~~ 210 (393)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9987543
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=119.11 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=69.7
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEe-eeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP-LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~-i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
..++|||+|||+.+|+++|+.+|++||.|..|+ |+.++.+| .|||+|.+.++|.+|+..|| ..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457999999999999999999999999999995 88776543 49999999999999999998 8999999999999
Q ss_pred ccC
Q 016219 324 IDG 326 (393)
Q Consensus 324 ~~~ 326 (393)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 280
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=119.17 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=69.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC---ccCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK---KIGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~---~~~g~~i~v 203 (393)
.+..++|||+|||+.+++++|+.+|++||.|..|+|+++ ||||||+|.+.++|.+|+..+++ .+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999998753 78999999999999999997752 389999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99875444
No 281
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=122.73 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 127 DPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
....++|||+|||+.+++++|+ ++|++||.|..|.+.+ +++++|||||+|.+.++|.+|+..+++. +.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999988753 6789999999999999999999998865 899999
Q ss_pred EEEEccCC
Q 016219 202 ACQLASIG 209 (393)
Q Consensus 202 ~v~~~~~~ 209 (393)
.|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998643
No 282
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.5e-16 Score=118.96 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=72.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v 203 (393)
......++|||+|||+.+++++|+++|++||.|..|+|+. ++.++|||||+|.+.++|.+||..+++ .+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999865 456899999999999999999988775 489999999
Q ss_pred EEccCCC
Q 016219 204 QLASIGP 210 (393)
Q Consensus 204 ~~~~~~~ 210 (393)
.++....
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9986543
No 283
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=118.90 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC---CccCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~~g~~i~v 203 (393)
....++|||+|||+.+++++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..++ ..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988764 7899999999999999999764 3489999999
Q ss_pred EEccCCCCC
Q 016219 204 QLASIGPAT 212 (393)
Q Consensus 204 ~~~~~~~~~ 212 (393)
.++......
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 998755443
No 284
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=125.79 Aligned_cols=80 Identities=24% Similarity=0.444 Sum_probs=72.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g~~i~v~~ 205 (393)
....++|||+|||+.+|+++|+.+|..||.|..+.++.+..+|+++|||||+|.+.++|.+||. ++ ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987777777799999999999999999999999 66 458999999998
Q ss_pred cc
Q 016219 206 AS 207 (393)
Q Consensus 206 ~~ 207 (393)
+.
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 75
No 285
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=122.69 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=72.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTA 202 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~ 202 (393)
.....++|||+|||+.+|+++|+.+|+.||. |..|+|++++. |+++|||||+|.+.++|.+||...+..+.||.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3456789999999999999999999999998 89999999986 9999999999999999999999433558999999
Q ss_pred EEEcc
Q 016219 203 CQLAS 207 (393)
Q Consensus 203 v~~~~ 207 (393)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 98875
No 286
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=120.97 Aligned_cols=81 Identities=17% Similarity=0.385 Sum_probs=73.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c--------
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-------- 196 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~-------- 196 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++++ ++.++|||||+|.+.++|.+|+..+++. +
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 9999999999999999999999988865 5
Q ss_pred CCeeeEEEEcc
Q 016219 197 GNRMTACQLAS 207 (393)
Q Consensus 197 ~g~~i~v~~~~ 207 (393)
.++.|.|.++.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 47888888875
No 287
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=121.85 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=74.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHcCCCc-cCCe
Q 016219 127 DPVHRKIFVHGLGWDTKAETLI---DAFKQYGEIEDCKAVCDKVSG---KSKGYGFILFKTRSGARKALKEPQKK-IGNR 199 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~---~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~ 199 (393)
....++|||+|||+.+++++|+ ++|++||.|..|+|++++.++ +++|||||+|.+.++|.+||..|++. +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 999999999999999988654 56699999999999999999998865 8999
Q ss_pred eeEEEEccCCC
Q 016219 200 MTACQLASIGP 210 (393)
Q Consensus 200 ~i~v~~~~~~~ 210 (393)
.|.|.++...+
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999987554
No 288
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2e-16 Score=117.45 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=67.8
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
..++|||+|||+.+++++|+++|++| .|..|+|. +++|||||+|.+.++|.+|+..|| ..+.|++|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34699999999999999999999999 99999984 569999999999999999999999 78999999999985
Q ss_pred cC
Q 016219 325 DG 326 (393)
Q Consensus 325 ~~ 326 (393)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 289
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.6e-16 Score=117.18 Aligned_cols=82 Identities=28% Similarity=0.389 Sum_probs=72.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.+...++|||+|||+.+++++|+.+|.+||.| +|+.+ .+++++|||||+|.+.++|.+||..+++. +.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45567999999999999999999999999977 56666 58999999999999999999999988865 899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9875533
No 290
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=7.3e-16 Score=121.34 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=68.3
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccE-EEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~-aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a 323 (393)
.+|||+||++.+|+++|+++|++||.|.+|+|+.. ++|| |||+|.+.++|.+|+..|| ..|.| ++|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 47899999999999999999999999999999864 2688 9999999999999999999 78887 99999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.+..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7653
No 291
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.7e-16 Score=119.96 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=68.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHH--cCCCc-
Q 016219 131 RKIFVHGL----GWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT----RSG----ARKALK--EPQKK- 195 (393)
Q Consensus 131 ~~vfV~nL----p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~~~~~- 195 (393)
.+|||+|| |+.+++..|+.+|+.||.|.+|.++.|+.||+++|||||+|.+ +.. |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 888888 66654
Q ss_pred cCCeeeEEEEcc
Q 016219 196 IGNRMTACQLAS 207 (393)
Q Consensus 196 ~~g~~i~v~~~~ 207 (393)
|.||.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 899999999754
No 292
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=7.4e-16 Score=117.82 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=71.7
Q ss_pred cccceeeecCCCC-----CCcHHHHHHHHhcCCCeeEEeeeecCCC-CCCccEEEEEecCHHHHHHHHHcCC-CccCCeE
Q 016219 245 YTQRKIFVSNVGS-----ELEPQKLLAFFSKYGEIEEGPLGIDKAT-GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (393)
Q Consensus 245 ~~~~~lfV~nLp~-----~~t~~~L~~~F~~~G~I~~v~i~~d~~~-g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~ 317 (393)
.++++|+|+||.. +-++++|+++|++||.|..|+|++++.+ +.++|||||+|.+.++|.+|+..|| ..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999963 2378999999999999999999998654 6899999999999999999999999 8999999
Q ss_pred EEEEEccc
Q 016219 318 LNCQRAID 325 (393)
Q Consensus 318 l~V~~a~~ 325 (393)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 293
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=123.02 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+.+|.+||.|..+.+..+..+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 445789999999999999999999999999954443333338899999999999999999999988854 8999999999
Q ss_pred ccCCCCC
Q 016219 206 ASIGPAT 212 (393)
Q Consensus 206 ~~~~~~~ 212 (393)
+......
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 8755443
No 294
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=5.8e-16 Score=119.44 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=70.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
...+..++|||+|||+.+++++|+++|++|| .|..++|+. +.++|||||+|.+.++|.+||..+++. +.|+.|.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678999999999999999999999999 899998854 258999999999999999999988865 8999999
Q ss_pred EEEccCC
Q 016219 203 CQLASIG 209 (393)
Q Consensus 203 v~~~~~~ 209 (393)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998643
No 295
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=113.25 Aligned_cols=78 Identities=19% Similarity=0.430 Sum_probs=69.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|+ +|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999987 57999999999999999998886 5899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9875544
No 296
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=9.8e-17 Score=122.48 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=72.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+.+|++||.|.. .+++++.+|+++|||||+|.+.++|.+||+ +++ .+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999988 677777789999999999999999999999 764 58999999999
Q ss_pred ccCC
Q 016219 206 ASIG 209 (393)
Q Consensus 206 ~~~~ 209 (393)
+...
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8644
No 297
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=3.7e-16 Score=122.10 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=64.8
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeE-----EE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI-----LN 319 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~-----l~ 319 (393)
...+|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|| ..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4579999999999999999999999999999999764 999999999999999999999 8899998 66
Q ss_pred EEEccc
Q 016219 320 CQRAID 325 (393)
Q Consensus 320 V~~a~~ 325 (393)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666544
No 298
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=117.76 Aligned_cols=80 Identities=20% Similarity=0.448 Sum_probs=71.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3455789999999999999999999999999999999875 789999999999999999887754 899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++...+.
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9875544
No 299
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-15 Score=115.67 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=70.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC-----ee
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN-----RM 200 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g-----~~ 200 (393)
....++|||+|||+.+++++|+.+|.+||.|..|+|+.+ |||||+|.+.++|.+||+.+++. |.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 79999999999999999998865 788 99
Q ss_pred eEEEEccCCCC
Q 016219 201 TACQLASIGPA 211 (393)
Q Consensus 201 i~v~~~~~~~~ 211 (393)
|.|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999876443
No 300
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=2e-16 Score=127.12 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=71.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 205 (393)
.....++|||+|||+++|+++|+++|++|| |..|+|++++. |+++|||||+|.+.++|.+||...+..|.||.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 345578999999999999999999999999 66999999985 9999999999999999999995444568999999988
Q ss_pred ccCCC
Q 016219 206 ASIGP 210 (393)
Q Consensus 206 ~~~~~ 210 (393)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76443
No 301
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=111.39 Aligned_cols=76 Identities=29% Similarity=0.417 Sum_probs=68.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC-CC-ccCCeeeE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP-QK-KIGNRMTA 202 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~~-~~~g~~i~ 202 (393)
..+...++|||+|||+.+++++|+.+|++||.|..|+|++ ++|||||+|.+.++|.+|+..+ ++ .+.|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 3445678999999999999999999999999999999986 4789999999999999999987 65 48999999
Q ss_pred EEEc
Q 016219 203 CQLA 206 (393)
Q Consensus 203 v~~~ 206 (393)
|.++
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 302
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=8.2e-16 Score=113.84 Aligned_cols=71 Identities=23% Similarity=0.484 Sum_probs=65.3
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcC----C-------CeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Cc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKY----G-------EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KN 312 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~----G-------~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~ 312 (393)
...++|||+|||+.+|+++|+++|+.| | .|..++++++ +|||||+|.+.++|.+|+ .|| ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 345799999999999999999999999 8 8999998754 899999999999999999 888 89
Q ss_pred cCCeEEEEEE
Q 016219 313 FEGHILNCQR 322 (393)
Q Consensus 313 ~~G~~l~V~~ 322 (393)
|.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 303
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=127.47 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=73.0
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcccC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~~~ 326 (393)
++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 57899999999999999999998888 8999999999998655
Q ss_pred C
Q 016219 327 P 327 (393)
Q Consensus 327 ~ 327 (393)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 304
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=119.47 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC---CccCCeeeE
Q 016219 127 DPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTA 202 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~---~~~~g~~i~ 202 (393)
...+++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|+..++ ..+.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 455789999999998 99999999999999999999873 47899999999999999999775 348999999
Q ss_pred EEEccCCC
Q 016219 203 CQLASIGP 210 (393)
Q Consensus 203 v~~~~~~~ 210 (393)
|.++....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99986443
No 305
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=114.22 Aligned_cols=79 Identities=23% Similarity=0.439 Sum_probs=69.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cC--CeeeE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IG--NRMTA 202 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~--g~~i~ 202 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..+++. +. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455689999999999999999999999999999998753 689999999999999999987754 77 89999
Q ss_pred EEEccCCC
Q 016219 203 CQLASIGP 210 (393)
Q Consensus 203 v~~~~~~~ 210 (393)
|.++...+
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99986543
No 306
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=7.1e-16 Score=128.87 Aligned_cols=80 Identities=21% Similarity=0.498 Sum_probs=74.1
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEEEEccc
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V~~a~~ 325 (393)
..++|||+|||+++|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+.. ...+.|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 357999999999999999999999999999999999999999999999999999999999996 4689999999998764
Q ss_pred C
Q 016219 326 G 326 (393)
Q Consensus 326 ~ 326 (393)
.
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 307
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=7.4e-16 Score=116.63 Aligned_cols=80 Identities=26% Similarity=0.344 Sum_probs=71.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 127 DPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
.+..++|||+|||+.+++++|+ .+|++||.|..|+|++ +|.++|||||+|.+.++|.+|+..+++. +.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998873 5788999999999999999999987755 899999
Q ss_pred EEEEccCC
Q 016219 202 ACQLASIG 209 (393)
Q Consensus 202 ~v~~~~~~ 209 (393)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998654
No 308
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=114.81 Aligned_cols=84 Identities=27% Similarity=0.429 Sum_probs=73.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v 203 (393)
......++|||+|||+.+++++|+++|+.|+ .|++++++.+++++|||||+|.+.++|.+||..+++ .|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456678999999999999999999999773 778888888999999999999999999999998775 489999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99865443
No 309
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=3.1e-15 Score=117.33 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=66.2
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccE-EEEEecCHHHHHHHHHcCC-CccCC--eEEEEEEc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~-aFV~F~~~~~A~~Al~~~~-~~~~G--~~l~V~~a 323 (393)
..|||+||++.+|+++|+++|++||.|..|+|+. + .|| |||+|.+.++|..|+..|| ..|.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4578999999999999999999999999999975 2 386 9999999999999999999 78877 69999999
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
.++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-17 Score=127.89 Aligned_cols=85 Identities=27% Similarity=0.367 Sum_probs=77.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cC
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--------CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IG 197 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~ 197 (393)
....++|||+|||+.+++++|+.+|++||.|.. |+|++++.+++++|||||+|.+.++|.+|+..+++. +.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999998 999999889999999999999999999999988855 89
Q ss_pred CeeeEEEEccCCCC
Q 016219 198 NRMTACQLASIGPA 211 (393)
Q Consensus 198 g~~i~v~~~~~~~~ 211 (393)
|+.|.|.++...+.
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999865443
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=118.11 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=69.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEcc
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~~ 207 (393)
..++|||+|||+.+++++|+.+|++||.|..|+|++ ++|||||+|.+.++|.+|+..+++. +.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998863 5789999999999999999988865 899999999987
Q ss_pred CCCC
Q 016219 208 IGPA 211 (393)
Q Consensus 208 ~~~~ 211 (393)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 5444
No 312
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=113.75 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=69.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|. ++++.+ +++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999996 777654 68899999999999999999988755 899999999
Q ss_pred EccCC
Q 016219 205 LASIG 209 (393)
Q Consensus 205 ~~~~~ 209 (393)
++...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98643
No 313
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.3e-16 Score=119.69 Aligned_cols=78 Identities=23% Similarity=0.411 Sum_probs=68.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v 203 (393)
....++|||+|||+.+++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+||..++ .+.|+.+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEe
Confidence 34578999999999999999999999999998 888888777 7999999999999999999999884 377887777
Q ss_pred EEc
Q 016219 204 QLA 206 (393)
Q Consensus 204 ~~~ 206 (393)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 314
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=113.89 Aligned_cols=79 Identities=25% Similarity=0.345 Sum_probs=70.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999998743 789999999999999999888754 899999999
Q ss_pred EccCCC
Q 016219 205 LASIGP 210 (393)
Q Consensus 205 ~~~~~~ 210 (393)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 986543
No 315
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=116.43 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=68.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|+ +++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44557899999999999999999999999999999987 46799999999999999999987755 899999998
Q ss_pred Ecc
Q 016219 205 LAS 207 (393)
Q Consensus 205 ~~~ 207 (393)
++.
T Consensus 97 ~a~ 99 (101)
T 2la4_A 97 WGK 99 (101)
T ss_dssp BCC
T ss_pred ecc
Confidence 764
No 316
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=111.10 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=69.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++ +||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455678999999999999999999999999999999873 39999999999999999987755 899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9875533
No 317
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.3e-15 Score=132.94 Aligned_cols=83 Identities=24% Similarity=0.343 Sum_probs=74.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+++|+++|+++|+.||.|..|+|++++.+|.++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3456799999999999999999999999999999999998899999999999999999999999888 889999999988
Q ss_pred cccC
Q 016219 323 AIDG 326 (393)
Q Consensus 323 a~~~ 326 (393)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7544
No 318
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.2e-15 Score=116.21 Aligned_cols=81 Identities=20% Similarity=0.421 Sum_probs=69.4
Q ss_pred cccCCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCee
Q 016219 122 QVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRM 200 (393)
Q Consensus 122 ~~~~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~ 200 (393)
.........++|||+|||+.+++++|+.+|++||.|..|+|+ +|||||+|.+.++|.+|+..+++. +.|+.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 334556678999999999999999999999999999999987 689999999999999999987755 89999
Q ss_pred eEEEEccCCC
Q 016219 201 TACQLASIGP 210 (393)
Q Consensus 201 i~v~~~~~~~ 210 (393)
|.|.++...+
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999986543
No 319
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=4.3e-15 Score=112.26 Aligned_cols=77 Identities=19% Similarity=0.382 Sum_probs=67.6
Q ss_pred cCCCCCcCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 124 ADEDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 124 ~~~~~~~~~vfV~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
....+..++|||+|||+ .+++++|+.+|++||.|..|+|. +|||||+|.+.++|.+|+..+++. +.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456689999999998 99999999999999999999883 789999999999999999988765 799999
Q ss_pred EEEEccC
Q 016219 202 ACQLASI 208 (393)
Q Consensus 202 ~v~~~~~ 208 (393)
.|.++..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999754
No 320
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=1.8e-15 Score=119.12 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=68.6
Q ss_pred cccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
...++|||+|| ++|+++|+.+|++||.|..|+|+ .++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45679999996 69999999999999999999985 468999999999999999999998 8899999999999
Q ss_pred ccCCC
Q 016219 324 IDGPK 328 (393)
Q Consensus 324 ~~~~~ 328 (393)
.+.+.
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 321
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=110.32 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=69.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|||+.+++++|+.+|++||.|..|+|++ +||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999873 39999999999999999988755 899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9875544
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=3e-15 Score=126.01 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=74.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446899999999999999999999999999999999998 9999999999999999999999988854 89999999998
Q ss_pred cC
Q 016219 207 SI 208 (393)
Q Consensus 207 ~~ 208 (393)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 323
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.8e-15 Score=130.62 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=70.7
Q ss_pred ccceeeecCCC-CCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 246 TQRKIFVSNVG-SELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 246 ~~~~lfV~nLp-~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.+++|||+||| +.+|+++|+.+|++||.|.+|+|+++ ++|||||+|.+.++|.+||..|| ..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35699999999 89999999999999999999999865 38999999999999999999999 8999999999998
Q ss_pred ccCC
Q 016219 324 IDGP 327 (393)
Q Consensus 324 ~~~~ 327 (393)
....
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 6543
No 324
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=4.5e-15 Score=126.79 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=73.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
.++|||+|||+.+++++|+.+|++||.|..|+|+++. +|+++|||||+|.+.++|.+|+..++..+.|+.|.|.++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 4899999999999999999999999999999999987 6999999999999999999999999888999999999865
No 325
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=113.93 Aligned_cols=79 Identities=27% Similarity=0.366 Sum_probs=69.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+.+|++||.|..+ ..+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988665 347899999999999999999999988855 8999999999
Q ss_pred ccCCC
Q 016219 206 ASIGP 210 (393)
Q Consensus 206 ~~~~~ 210 (393)
+....
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 86443
No 326
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=6.8e-15 Score=112.55 Aligned_cols=78 Identities=31% Similarity=0.434 Sum_probs=68.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
....++|||+|||+.+++++|+++|.+||.|..|+|+ ++||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999986 459999999999999999987754 8999999999
Q ss_pred ccCCCCC
Q 016219 206 ASIGPAT 212 (393)
Q Consensus 206 ~~~~~~~ 212 (393)
+......
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 8755443
No 327
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=1.5e-14 Score=131.62 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=74.0
Q ss_pred ccccceeeecCCCCCCcHHHHH----HHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~----~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l 318 (393)
....++|||+|||+.+|+++|+ ++|+.||.|..|+|++ +|+++|||||+|.+.++|.+|+..|| ..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3456799999999999999977 8999999999999975 78899999999999999999999999 88999999
Q ss_pred EEEEcccCC
Q 016219 319 NCQRAIDGP 327 (393)
Q Consensus 319 ~V~~a~~~~ 327 (393)
+|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 328
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=6.4e-15 Score=141.36 Aligned_cols=83 Identities=28% Similarity=0.462 Sum_probs=76.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+|+++|..+|.+||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|++. |.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999999999999999999999999999998865 89999999998
Q ss_pred cCCC
Q 016219 207 SIGP 210 (393)
Q Consensus 207 ~~~~ 210 (393)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 329
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=3.3e-15 Score=110.94 Aligned_cols=77 Identities=23% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEc
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 206 (393)
.....+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.++.. ....+.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEc
Confidence 345689999999999999999999999999999999874 78999999999999985322 222357999999987
Q ss_pred cCC
Q 016219 207 SIG 209 (393)
Q Consensus 207 ~~~ 209 (393)
..+
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 330
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=1.8e-15 Score=132.12 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=69.3
Q ss_pred ccccceeeecCCCCCC---------cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc
Q 016219 244 EYTQRKIFVSNVGSEL---------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~---------t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~ 313 (393)
....++|||+|||..+ ++++|+.+|++||.|..|+|+.+ +|||||+|.+.++|..|+..|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456899999999998 79999999999999999999864 8999999999999999999999 677
Q ss_pred ------------CCeEEEEEEcccCCCCC
Q 016219 314 ------------EGHILNCQRAIDGPKPG 330 (393)
Q Consensus 314 ------------~G~~l~V~~a~~~~~~~ 330 (393)
.|+.|.|.||...+.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC------
T ss_pred eccccccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998766543
No 331
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.1e-15 Score=109.86 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=66.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+.+|.+||.|..| +.++.+++ ||||+|.+.++|.+||. +++ .+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 56665665 99999999999999999 775 489999999876
Q ss_pred cCC
Q 016219 207 SIG 209 (393)
Q Consensus 207 ~~~ 209 (393)
...
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=111.28 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=67.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC--ccCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK--KIGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~--~~~g~~i~v 203 (393)
....++|||+|||+.+++++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+..+++ .+.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666552 578999999999999999998886 489999999
Q ss_pred EEccCCCC
Q 016219 204 QLASIGPA 211 (393)
Q Consensus 204 ~~~~~~~~ 211 (393)
.++.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99875443
No 333
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=4.1e-15 Score=125.12 Aligned_cols=81 Identities=25% Similarity=0.347 Sum_probs=72.5
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCC--CCccEEEEEecCHHHHHHHHHcCC-CccC---CeEEEE
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG--KPKGFCLFVYKTVDAAKKALEEPH-KNFE---GHILNC 320 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g--~~kg~aFV~F~~~~~A~~Al~~~~-~~~~---G~~l~V 320 (393)
.++|||+|||+++|+++|+++|++||.|..|+|++++.+| +++|||||+|.+.++|.+|+..|+ ..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4699999999999999999999999999999999998877 899999999999999999999988 4444 688888
Q ss_pred EEcccCC
Q 016219 321 QRAIDGP 327 (393)
Q Consensus 321 ~~a~~~~ 327 (393)
.++....
T Consensus 83 ~~~~~~~ 89 (175)
T 3nmr_A 83 KPADSEK 89 (175)
T ss_dssp EECGGGC
T ss_pred ccccccc
Confidence 8876543
No 334
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.6e-15 Score=112.52 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=67.5
Q ss_pred CCCcCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 127 DPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 127 ~~~~~~vfV~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.+..++|||+|||+ .+++++|+.+|++||.|..|+|. +|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45578999999998 99999999999999999999983 689999999999999999987754 889999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9865443
No 335
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=109.75 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=67.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQY--GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
....++|||+|||+.+++++|+.+|++| |.|..|+++ +|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 899998764 579999999999999999988765 89999999
Q ss_pred EEccCCC
Q 016219 204 QLASIGP 210 (393)
Q Consensus 204 ~~~~~~~ 210 (393)
.++....
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9986544
No 336
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=8.4e-15 Score=113.49 Aligned_cols=75 Identities=20% Similarity=0.466 Sum_probs=67.5
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 127 DPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
....++|||+|||+. +++++|+.+|.+||.|..|+| ++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344689999999999 999999999999999999988 5789999999999999999887754 899999999
Q ss_pred EccCC
Q 016219 205 LASIG 209 (393)
Q Consensus 205 ~~~~~ 209 (393)
++...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98643
No 337
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=5.1e-15 Score=121.49 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=71.4
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
......++|||+|||+.+++++|+.+|++||.|..|+|+++ ++|||||+|.+.++|.+|+..+++. +.|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999876 5899999999999999999987754 89999999
Q ss_pred EEccCC
Q 016219 204 QLASIG 209 (393)
Q Consensus 204 ~~~~~~ 209 (393)
.++...
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998643
No 338
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=113.17 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCcCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c-----CCe
Q 016219 128 PVHRKIFV--HGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-----GNR 199 (393)
Q Consensus 128 ~~~~~vfV--~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~-----~g~ 199 (393)
...++||| |||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|+..||+. + .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34688999 77999999999999999999999998753 3789999999999999999999976 4 588
Q ss_pred eeEEEEccCCCCCC
Q 016219 200 MTACQLASIGPATT 213 (393)
Q Consensus 200 ~i~v~~~~~~~~~~ 213 (393)
.|.|.++..-+...
T Consensus 97 ~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 97 TLYLNFVEKVQWSG 110 (114)
T ss_dssp ECEEEEESCCCCSS
T ss_pred EEEEEecccCcccC
Confidence 99999987555543
No 339
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=123.54 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=70.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--Eee---cCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCee
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCK--AVC---DKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRM 200 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~--i~~---~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~ 200 (393)
....++|||+|||+.+|+++|+.+|++||.|..+. ++. ...+|+++|||||+|.+.++|.+|+..+++. +.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45568999999999999999999999999987751 111 1237899999999999999999999988865 89999
Q ss_pred eEEEEccCC
Q 016219 201 TACQLASIG 209 (393)
Q Consensus 201 i~v~~~~~~ 209 (393)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998644
No 340
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=1.1e-14 Score=122.15 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=74.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44689999999999999999999999999999999999889999999999999999999999987755 89999999987
Q ss_pred c
Q 016219 207 S 207 (393)
Q Consensus 207 ~ 207 (393)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 341
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-14 Score=110.78 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=68.8
Q ss_pred ccccceeeecCCCCCCc-----------HHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-C
Q 016219 244 EYTQRKIFVSNVGSELE-----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t-----------~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~ 311 (393)
..+.++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|| .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34567999999954332 5899999999999999966 443 379999999999999999999999 8
Q ss_pred ccCCeEEEEEEcccCCC
Q 016219 312 NFEGHILNCQRAIDGPK 328 (393)
Q Consensus 312 ~~~G~~l~V~~a~~~~~ 328 (393)
.|.||+|+|.++.++..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999976544
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=1e-14 Score=108.12 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=68.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+.+|++| .|..|+|. +++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999884 68899999999999999999988865 89999999998
Q ss_pred cCCC
Q 016219 207 SIGP 210 (393)
Q Consensus 207 ~~~~ 210 (393)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5443
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=109.73 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeEEEEcc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 207 (393)
...++|||+|||+.+++++|+.+|++||.|..|+|+++ ++|||||+|.+.++|.+|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999998764 789999999999999865443 234689999998876
Q ss_pred CCC
Q 016219 208 IGP 210 (393)
Q Consensus 208 ~~~ 210 (393)
...
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 344
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.1e-14 Score=111.29 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred ccceeeecCC--CCCC--------cHHHHHHHHhcCCCeeEEeeeecCCC--CCCccEEEEEecCHHHHHHHHHcCC-Cc
Q 016219 246 TQRKIFVSNV--GSEL--------EPQKLLAFFSKYGEIEEGPLGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH-KN 312 (393)
Q Consensus 246 ~~~~lfV~nL--p~~~--------t~~~L~~~F~~~G~I~~v~i~~d~~~--g~~kg~aFV~F~~~~~A~~Al~~~~-~~ 312 (393)
+++.|.|.|+ |..+ ..++|++.|++||.|.+|+|++++.+ +.++|||||+|.+.++|.+|+..|| ..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 3333 34799999999999999999988754 4689999999999999999999999 89
Q ss_pred cCCeEEEEEEccc
Q 016219 313 FEGHILNCQRAID 325 (393)
Q Consensus 313 ~~G~~l~V~~a~~ 325 (393)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999743
No 345
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.1e-14 Score=106.92 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=68.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
.....++|||+|| .+++++|+.+|++||.|..|+|. +++|||||+|.+.++|.+||..+++. +.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999884 57899999999999999999988865 899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++...+.
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9865543
No 346
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=109.15 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=68.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEE
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCK-AVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~-i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~ 205 (393)
...++|||+|||+.+++++|+.+|++||.|..|+ |+.++.++ .|||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4468999999999999999999999999999994 88776444 3999999999999999987754 8999999999
Q ss_pred ccCC
Q 016219 206 ASIG 209 (393)
Q Consensus 206 ~~~~ 209 (393)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8654
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.8e-14 Score=106.51 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-c
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQY----G-------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-K 195 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~ 195 (393)
...++|||+|||+.+++++|+.+|++| | .|..++++++ +|||||+|.+.++|.+|+ .+++ .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8999988753 789999999999999999 7775 4
Q ss_pred cCCeeeEEEE
Q 016219 196 IGNRMTACQL 205 (393)
Q Consensus 196 ~~g~~i~v~~ 205 (393)
+.|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 8999999864
No 348
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=3.8e-14 Score=121.75 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEEEc
Q 016219 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~~~ 206 (393)
...++|||+|||+.+++++|+.+|++||.|..|+|++++.+|.++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999987755 89999999998
Q ss_pred cCC
Q 016219 207 SIG 209 (393)
Q Consensus 207 ~~~ 209 (393)
...
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=102.89 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=62.7
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEEE
Q 016219 131 RKIFVHGLGWDTKAET----LIDAFKQY-GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~----l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v~ 204 (393)
+.|||+|||+.++.++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|++. +.||.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599988 34 99999999999999999998865 999999999
Q ss_pred EccCCCCC
Q 016219 205 LASIGPAT 212 (393)
Q Consensus 205 ~~~~~~~~ 212 (393)
++..+...
T Consensus 80 ~A~~~sd~ 87 (96)
T 2diu_A 80 FTPKNREL 87 (96)
T ss_dssp SSCCSCCC
T ss_pred ecCCCcce
Confidence 98765543
No 350
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=6.4e-14 Score=123.36 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=72.5
Q ss_pred ccccceeeecCCCC-CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEE
Q 016219 244 EYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (393)
Q Consensus 244 ~~~~~~lfV~nLp~-~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~ 321 (393)
....++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|+ ..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999 99999999999999999999999874 8999999999999999999888 89999999999
Q ss_pred EcccCC
Q 016219 322 RAIDGP 327 (393)
Q Consensus 322 ~a~~~~ 327 (393)
++....
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 997653
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=6.5e-14 Score=106.97 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=69.9
Q ss_pred CcCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 129 VHRKIFVHGLGW-----DTKAETLIDAFKQYGEIEDCKAVCDKVS-GKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 129 ~~~~vfV~nLp~-----~~t~~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
.+++|+|+||.. ..++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..||+. +.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999973 2378999999999999999999998754 689999999999999999999999976 899999
Q ss_pred EEEEcc
Q 016219 202 ACQLAS 207 (393)
Q Consensus 202 ~v~~~~ 207 (393)
.|.++.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999874
No 352
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=7.6e-14 Score=114.02 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCC--eeeEE
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN--RMTAC 203 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g--~~i~v 203 (393)
+..-.+|||+||++.+|+++|+++|++||.|..|+|+.. .++|||||+|.+.++|.+|+..|++. |.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 334567999999999999999999999999999998643 36799999999999999999999976 644 99999
Q ss_pred EEccCC
Q 016219 204 QLASIG 209 (393)
Q Consensus 204 ~~~~~~ 209 (393)
.++...
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 998754
No 353
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=2.8e-14 Score=111.34 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=63.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCee-----eE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRM-----TA 202 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~-----i~ 202 (393)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+||..|++. |.|+. +.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4579999999999999999999999999999999765 89999999999999999988855 88887 66
Q ss_pred EEEcc
Q 016219 203 CQLAS 207 (393)
Q Consensus 203 v~~~~ 207 (393)
|....
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 66654
No 354
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=3.3e-14 Score=110.74 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=70.2
Q ss_pred cccceeeecCCCC--CC---cHHHHHHHHhcCCCeeEEeeeecCC----CCCCccEEEEEecCHHHHHHHHHcCC-CccC
Q 016219 245 YTQRKIFVSNVGS--EL---EPQKLLAFFSKYGEIEEGPLGIDKA----TGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (393)
Q Consensus 245 ~~~~~lfV~nLp~--~~---t~~~L~~~F~~~G~I~~v~i~~d~~----~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~ 314 (393)
.++++|+|+|+-. ++ .+++|++.|++||.|.+|+|++++. ++.++|||||+|.+.++|.+|+..|| ..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3578999999943 22 3689999999999999999999864 46778999999999999999999999 8999
Q ss_pred CeEEEEEEcc
Q 016219 315 GHILNCQRAI 324 (393)
Q Consensus 315 G~~l~V~~a~ 324 (393)
||.|+|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999974
No 355
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=6e-14 Score=120.64 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=70.8
Q ss_pred cceeeecCCCC-CCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 247 QRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 247 ~~~lfV~nLp~-~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|+ ..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46999999999 99999999999999999999998774 8999999999999999999888 88999999999997
Q ss_pred cCC
Q 016219 325 DGP 327 (393)
Q Consensus 325 ~~~ 327 (393)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=9.2e-15 Score=111.64 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=63.6
Q ss_pred ecCCCCCCcHHHHHHHH------------hcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEE
Q 016219 252 VSNVGSELEPQKLLAFF------------SKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (393)
Q Consensus 252 V~nLp~~~t~~~L~~~F------------~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l 318 (393)
+.|||+.+++++|+++| ++||.|..|+|+++. +++++|||||+|.+.++|.+|+..|| ..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 999999999999875 48899999999999999999999999 89999999
Q ss_pred EEEEc
Q 016219 319 NCQRA 323 (393)
Q Consensus 319 ~V~~a 323 (393)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 357
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=9.2e-14 Score=109.33 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=66.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHcCCCc-cCC--eeeEEEE
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY-GFILFKTRSGARKALKEPQKK-IGN--RMTACQL 205 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~-~~g--~~i~v~~ 205 (393)
--.|||+||++.+|+++|+++|++||.|..|+|+.. ++|| |||+|.+.++|.+|+..|++. |.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 346889999999999999999999999999988764 3678 999999999999999999976 776 8899999
Q ss_pred ccCC
Q 016219 206 ASIG 209 (393)
Q Consensus 206 ~~~~ 209 (393)
+...
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 8644
No 358
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=7.8e-15 Score=123.56 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=71.8
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+.+|+++|+++|..||.|.. .++++..+|.++|||||+|.+.++|.+|+. |+ ..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 345679999999999999999999999998877 344555789999999999999999999995 77 889999999999
Q ss_pred cccCC
Q 016219 323 AIDGP 327 (393)
Q Consensus 323 a~~~~ 327 (393)
+....
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87653
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=1.6e-13 Score=107.88 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=68.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCC-ccCCeeeEEE
Q 016219 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~g~~i~v~ 204 (393)
.....++|||+|| .+++++|+.+|++||.|..|+|. +++|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 5789999999999999999988775 4899999999
Q ss_pred EccCCCC
Q 016219 205 LASIGPA 211 (393)
Q Consensus 205 ~~~~~~~ 211 (393)
++.....
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9875433
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.8e-13 Score=100.39 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=62.8
Q ss_pred ceeeecCCC-------CCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEE
Q 016219 248 RKIFVSNVG-------SELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNC 320 (393)
Q Consensus 248 ~~lfV~nLp-------~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V 320 (393)
++|.|.-.. ..+++++|+.+|++||.|..|+|+ ++++|||||+|.+.++|..|+..++. +.|+.|+|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~V 84 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLKI 84 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCEE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEEE
Confidence 355555443 468999999999999999999997 46799999999999999999999653 57999999
Q ss_pred EEcccCCC
Q 016219 321 QRAIDGPK 328 (393)
Q Consensus 321 ~~a~~~~~ 328 (393)
.|+..++.
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99876543
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=1.3e-13 Score=123.94 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=69.7
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~ 322 (393)
....++|||+|||+++|+++|+.+|+.||.|..|+|.++ +|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345579999999999999999999999999999999643 8999999999999999999888 889999999999
Q ss_pred ccc
Q 016219 323 AID 325 (393)
Q Consensus 323 a~~ 325 (393)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 362
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=3.3e-13 Score=105.74 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=63.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHcCCCc-cCC--eeeEEEEcc
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY-GFILFKTRSGARKALKEPQKK-IGN--RMTACQLAS 207 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~-~~g--~~i~v~~~~ 207 (393)
.|||+|||+.+++++|+++|++||.|..|+|+. + .|| |||+|.+.++|..|+..|++. |.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 468999999999999999999999999999865 2 276 999999999999999999876 766 689998876
Q ss_pred CC
Q 016219 208 IG 209 (393)
Q Consensus 208 ~~ 209 (393)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=1.4e-13 Score=120.11 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=68.7
Q ss_pred CCCCcCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-
Q 016219 126 EDPVHRKIFVHGLGWDT---------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK- 195 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~- 195 (393)
.....++|||+|||..+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|..|+..|++.
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35568999999999998 7999999999999999999984 5799999999999999999998865
Q ss_pred c------------CCeeeEEEEccCCCC
Q 016219 196 I------------GNRMTACQLASIGPA 211 (393)
Q Consensus 196 ~------------~g~~i~v~~~~~~~~ 211 (393)
| .|+.|.|.++...+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 6 799999999975543
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.8e-12 Score=98.66 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCCCcCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC
Q 016219 125 DEDPVHRKIFVHGLGWDTK-----------AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (393)
Q Consensus 125 ~~~~~~~~vfV~nLp~~~t-----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 193 (393)
.....+++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..++
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3556689999999954432 5799999999999999965 544 389999999999999999999998
Q ss_pred Cc-cCCeeeEEEEccCCC
Q 016219 194 KK-IGNRMTACQLASIGP 210 (393)
Q Consensus 194 ~~-~~g~~i~v~~~~~~~ 210 (393)
+. +.||.|.|.++....
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 65 899999999986543
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=2.2e-12 Score=99.63 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred cccceeeecCCCCCC----------cHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc
Q 016219 245 YTQRKIFVSNVGSEL----------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (393)
Q Consensus 245 ~~~~~lfV~nLp~~~----------t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~ 313 (393)
.++++|.|.|+=..- .+++|++.|++||.|..|.|+++. ++|||||+|.+.++|.+|+..|| ..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345789999984321 246889999999999999997653 59999999999999999999999 899
Q ss_pred CCeEEEEEEcc
Q 016219 314 EGHILNCQRAI 324 (393)
Q Consensus 314 ~G~~l~V~~a~ 324 (393)
+||.|+|.|+.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999974
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.35 E-value=4e-13 Score=102.46 Aligned_cols=71 Identities=17% Similarity=0.350 Sum_probs=61.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeee
Q 016219 135 VHGLGWDTKAETLIDAF------------KQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (393)
Q Consensus 135 V~nLp~~~t~~~l~~~f------------~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i 201 (393)
+.|||..+++++|+++| ++||.|.+|+|+++. +++++|||||.|.+.++|.+|+..+|+. +.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777777666 999999999999887 5899999999999999999999998876 899999
Q ss_pred EEEEc
Q 016219 202 ACQLA 206 (393)
Q Consensus 202 ~v~~~ 206 (393)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=2.1e-12 Score=98.59 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=67.9
Q ss_pred CcCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHcCCCc-
Q 016219 129 VHRKIFVHGL--GWDTK--------AETLIDAFKQYGEIEDCKAVCDKVS--GKSKGYGFILFKTRSGARKALKEPQKK- 195 (393)
Q Consensus 129 ~~~~vfV~nL--p~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~~~~~- 195 (393)
.++.|.|.|+ |..+. .++|++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 33333 3689999999999999999988754 468999999999999999999999976
Q ss_pred cCCeeeEEEEcc
Q 016219 196 IGNRMTACQLAS 207 (393)
Q Consensus 196 ~~g~~i~v~~~~ 207 (393)
+.||.|.|.+..
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 899999998864
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2e-11 Score=91.96 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=64.0
Q ss_pred cCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeeeE
Q 016219 130 HRKIFVHGLG-------WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTA 202 (393)
Q Consensus 130 ~~~vfV~nLp-------~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i~ 202 (393)
..+|.|.-.+ ..+++++|+.+|++||.|..|+|+ ++++|||||+|.+.++|..|+..+++ +.|+.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEE
Confidence 4567776554 468999999999999999999987 36899999999999999999998654 6799999
Q ss_pred EEEccCCCC
Q 016219 203 CQLASIGPA 211 (393)
Q Consensus 203 v~~~~~~~~ 211 (393)
|.++...+.
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999765543
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=3.4e-12 Score=99.35 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=68.6
Q ss_pred CcCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHcCCCc-cCC
Q 016219 129 VHRKIFVHGLGW-----DTKAETLIDAFKQYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKALKEPQKK-IGN 198 (393)
Q Consensus 129 ~~~~vfV~nLp~-----~~t~~~l~~~f~~~G~i~~~~i~~~~~----~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g 198 (393)
.+++|+|.|+-. +-.+++|++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+|+..||+. +.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 368999999942 224689999999999999999999864 4678899999999999999999999976 899
Q ss_pred eeeEEEEcc
Q 016219 199 RMTACQLAS 207 (393)
Q Consensus 199 ~~i~v~~~~ 207 (393)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3.2e-12 Score=117.59 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=64.6
Q ss_pred cccccceeeecC--CCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc---CCe
Q 016219 243 SEYTQRKIFVSN--VGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF---EGH 316 (393)
Q Consensus 243 ~~~~~~~lfV~n--Lp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~---~G~ 316 (393)
...++++|||+| |++.+|+++|+++|++||.|..|.|++ +||||||+|.+.++|.+|+..|| ..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345667999999 578999999999999999999998863 48999999999999999999999 544 355
Q ss_pred --EEEEEEcc
Q 016219 317 --ILNCQRAI 324 (393)
Q Consensus 317 --~l~V~~a~ 324 (393)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777773
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.18 E-value=5e-11 Score=109.66 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCCCcCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c---CCe
Q 016219 126 EDPVHRKIFVHG--LGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---GNR 199 (393)
Q Consensus 126 ~~~~~~~vfV~n--Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~---~g~ 199 (393)
.+...++|||+| |++.+|+++|+++|++||.|..|+|.. +||||||+|.+.++|.+|++.||+. + .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355678999999 579999999999999999999987753 5799999999999999999999975 3 355
Q ss_pred --eeEEEEc
Q 016219 200 --MTACQLA 206 (393)
Q Consensus 200 --~i~v~~~ 206 (393)
.+.+.++
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4666665
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=6.6e-11 Score=91.41 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=66.5
Q ss_pred cccccceeeecCCCCC-CcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecC-HHHHHHHHHcCC---CccCCeE
Q 016219 243 SEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT-VDAAKKALEEPH---KNFEGHI 317 (393)
Q Consensus 243 ~~~~~~~lfV~nLp~~-~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~-~~~A~~Al~~~~---~~~~G~~ 317 (393)
....+..|||+||++. ++.++|+.+|+.||.|.+|.|.++.. .|||.|.+ ..+|..|+..++ ..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4556789999999999 99999999999999999999987743 59999999 899999999996 6899988
Q ss_pred EEEEEc
Q 016219 318 LNCQRA 323 (393)
Q Consensus 318 l~V~~a 323 (393)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888664
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=9.4e-11 Score=84.68 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=60.8
Q ss_pred cccceeeecCCC----CCCcH----HHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCC
Q 016219 245 YTQRKIFVSNVG----SELEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (393)
Q Consensus 245 ~~~~~lfV~nLp----~~~t~----~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G 315 (393)
++..||+|...+ .++-. .+|.+.|++||.|..++|+.|+ +||+|.+.++|.+||. || ..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 344588888876 23434 6789999999999999998763 8999999999999999 77 89999
Q ss_pred eEEEEEEccc
Q 016219 316 HILNCQRAID 325 (393)
Q Consensus 316 ~~l~V~~a~~ 325 (393)
|.|+|+++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999864
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.08 E-value=3.7e-10 Score=87.10 Aligned_cols=76 Identities=8% Similarity=0.111 Sum_probs=63.8
Q ss_pred CCcCeEEEcCCCCCCC----------HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-c
Q 016219 128 PVHRKIFVHGLGWDTK----------AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I 196 (393)
Q Consensus 128 ~~~~~vfV~nLp~~~t----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~ 196 (393)
..++.|.|.|+=.... +++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|+..||+. +
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3467899999853322 35789999999999999987653 5899999999999999999999976 8
Q ss_pred CCeeeEEEEcc
Q 016219 197 GNRMTACQLAS 207 (393)
Q Consensus 197 ~g~~i~v~~~~ 207 (393)
.||.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999974
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.8e-09 Score=83.36 Aligned_cols=75 Identities=25% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCCCcCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHcCC---CccCCee
Q 016219 126 EDPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT-RSGARKALKEPQ---KKIGNRM 200 (393)
Q Consensus 126 ~~~~~~~vfV~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~-~~~a~~a~~~~~---~~~~g~~ 200 (393)
.-+.++.|||+||++. ++.++|+++|++||.|..|.++++.. .|||.|.+ ..+|..|+..++ ..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456789999999999 99999999999999999999988763 49999999 799999999885 3478877
Q ss_pred eEEEEc
Q 016219 201 TACQLA 206 (393)
Q Consensus 201 i~v~~~ 206 (393)
+.+...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777664
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=4.6e-10 Score=81.42 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=60.8
Q ss_pred ccccceeeecCCCCC-----CcH----HHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-Ccc
Q 016219 244 EYTQRKIFVSNVGSE-----LEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~-----~t~----~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~ 313 (393)
.++..||+|..++.. +-. .+|.+.|..||.|..++|+.|+ +||+|.+.++|.+||. |+ ..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345569999988743 322 5688999999999999999773 9999999999999999 77 999
Q ss_pred CCeEEEEEEcc
Q 016219 314 EGHILNCQRAI 324 (393)
Q Consensus 314 ~G~~l~V~~a~ 324 (393)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999854
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=2.3e-09 Score=93.60 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=60.3
Q ss_pred CCcHHHHHHHHhcCCCeeEEeeeecC----CCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 016219 258 ELEPQKLLAFFSKYGEIEEGPLGIDK----ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (393)
Q Consensus 258 ~~t~~~L~~~F~~~G~I~~v~i~~d~----~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a~ 324 (393)
.-.+++|++.|++||.|.++.|+++. .++.++|++||+|.+.++|.+|+..|| ..+.||+|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45678999999999999999999654 355899999999999999999999999 89999999999964
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=9.5e-09 Score=74.20 Aligned_cols=73 Identities=23% Similarity=0.244 Sum_probs=60.6
Q ss_pred CCcCeEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-CccCC
Q 016219 128 PVHRKIFVHGLG----WDTKA----ETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGN 198 (393)
Q Consensus 128 ~~~~~vfV~nLp----~~~t~----~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~g 198 (393)
+..-||+|.-+| .++-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|+. |+ ..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 445688888776 34444 6789999999999999999875 8999999999999999 66 55999
Q ss_pred eeeEEEEccCC
Q 016219 199 RMTACQLASIG 209 (393)
Q Consensus 199 ~~i~v~~~~~~ 209 (393)
|.|+|.++...
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998643
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.6e-08 Score=72.25 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=60.0
Q ss_pred CCCcCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC-Ccc
Q 016219 127 DPVHRKIFVHGLGWD-----TKA----ETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~-----~t~----~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~ 196 (393)
-+..-||+|.-++.. +-. .+|.+.|.+||.|..+|++.++ +||+|.+.++|.+||. ++ ..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 455679999988743 333 5688999999999999999886 9999999999999999 65 569
Q ss_pred CCeeeEEEEcc
Q 016219 197 GNRMTACQLAS 207 (393)
Q Consensus 197 ~g~~i~v~~~~ 207 (393)
.||.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.57 E-value=1.1e-07 Score=82.93 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=63.9
Q ss_pred cCeEEEcCCC-----CCCCHHHHHHHHhhcCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHcCCCc-cCCe
Q 016219 130 HRKIFVHGLG-----WDTKAETLIDAFKQYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKALKEPQKK-IGNR 199 (393)
Q Consensus 130 ~~~vfV~nLp-----~~~t~~~l~~~f~~~G~i~~~~i~~~~~----~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~ 199 (393)
.+.+.+.|+- ..-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|+..|++. +.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3445555443 3345679999999999999999986644 4589999999999999999999999977 7999
Q ss_pred eeEEEEcc
Q 016219 200 MTACQLAS 207 (393)
Q Consensus 200 ~i~v~~~~ 207 (393)
.|.+.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99998864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=7.4e-07 Score=65.84 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=65.7
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcC-----CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKY-----GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~-----G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~ 319 (393)
..++|-|-|||..+++..|+.++.++ |.|+.|.+..| .|=|+|+|.+...|-+|.-.|+ ..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35799999999999999999999999 99999999887 5679999999999999999998 899999999
Q ss_pred EEEc
Q 016219 320 CQRA 323 (393)
Q Consensus 320 V~~a 323 (393)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9643
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=7e-06 Score=60.23 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCeee
Q 016219 127 DPVHRKIFVHGLGWDTKAETLIDAFKQ-----YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMT 201 (393)
Q Consensus 127 ~~~~~~vfV~nLp~~~t~~~l~~~f~~-----~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~~i 201 (393)
....++|.|.|||+.+.++.|.-+|+. =|.|..+.... +-|+|+|.+...|++.|+.-...+.+..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 345689999999999999999999976 25788877543 35999999999999999998888999899
Q ss_pred EEEEcc
Q 016219 202 ACQLAS 207 (393)
Q Consensus 202 ~v~~~~ 207 (393)
.|....
T Consensus 77 sV~P~~ 82 (104)
T 2dhx_A 77 SLRPAP 82 (104)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 987743
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.4e-05 Score=57.87 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=63.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeE
Q 016219 129 VHRKIFVHGLGWDTKAETLIDAFKQY-----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (393)
Q Consensus 129 ~~~~vfV~nLp~~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~ 202 (393)
..|+|-+-|||-+++...|+.+...+ |.|..|.+..|. +-|+|+|.+...|-+|.-.+++. |.||.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36899999999999999999999999 999999887765 24999999999999998777755 8999999
Q ss_pred EEEc
Q 016219 203 CQLA 206 (393)
Q Consensus 203 v~~~ 206 (393)
|...
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9653
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=0.00032 Score=51.43 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=63.2
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcC-----CCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCCeEEEE
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKY-----GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNC 320 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~-----G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G~~l~V 320 (393)
.+++|.|.|||..+.++.|.-+|+.- |.|..+.... +-|+|+|.+...|.+.|+.-.+.|+|..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 45799999999999999999999872 6788887642 5689999999999999999889999999999
Q ss_pred EEcccCC
Q 016219 321 QRAIDGP 327 (393)
Q Consensus 321 ~~a~~~~ 327 (393)
....+..
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 8755443
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=9.7e-05 Score=54.47 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=61.4
Q ss_pred cceeeecCCCCCC-c----HHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEE
Q 016219 247 QRKIFVSNVGSEL-E----PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (393)
Q Consensus 247 ~~~lfV~nLp~~~-t----~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V 320 (393)
+++|+|.||+..+ . ...++.+|..|+++.....++. =.-..|.|.++++|.+|...|+ ..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998865 3 2577899999999988777643 2247899999999999999999 7899999999
Q ss_pred EEccc
Q 016219 321 QRAID 325 (393)
Q Consensus 321 ~~a~~ 325 (393)
.++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.44 E-value=0.00046 Score=49.97 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=45.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 192 (393)
.++| ++|+.+...+|..+|+.||.| .|+.+-|. .|||.|.+++.|..|+..+
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4555 999999999999999999966 78888775 6999999999999999865
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0015 Score=49.53 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=60.2
Q ss_pred ccccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCCCccCC-eEEEEEE
Q 016219 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEG-HILNCQR 322 (393)
Q Consensus 244 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~~~~~G-~~l~V~~ 322 (393)
....+-|.|-+.|... ...|...|++||.|....... ...+..|.|.+..+|.+||......|.| -.|-|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3445789999999874 688889999999999888621 2579999999999999999998887875 6677777
Q ss_pred cc
Q 016219 323 AI 324 (393)
Q Consensus 323 a~ 324 (393)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.13 E-value=0.00043 Score=50.28 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=45.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcC
Q 016219 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (393)
Q Consensus 132 ~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 192 (393)
.++| ++|+.+...+|..+|+.||.| .|+.+-|. .|||.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455 999999999999999999955 78888775 6999999999999999965
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.11 E-value=0.0013 Score=47.61 Aligned_cols=63 Identities=8% Similarity=-0.000 Sum_probs=52.4
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCC--CccEEEEEecCHHHHHHHHHcCC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK--PKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~--~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
.+|.|++||+.+|++++.+.++....+.....+..+.+.. .-.-|||.|.+.+++..-...++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 4799999999999999999999999888777766544332 23569999999999999888877
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.99 E-value=0.0019 Score=46.71 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=44.6
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
.+.++| ++|..+...||.++|+.||.| .|+-+-| .-|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 356777 999999999999999999954 3433333 369999999999999999773
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.91 E-value=0.0033 Score=45.48 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=52.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHcCCCc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK--SKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~--~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
.+|.|++||+++|++++.+.++.+..+.....+..+.+.. .-.-|||.|.+.+++.......++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 4799999999999999999999988876666655554322 2356999999999999998888765
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.66 E-value=0.0019 Score=46.93 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=43.9
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
+.++| ++|..+...+|.++|+.||.| .|+-+-| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 46677 999999999999999999943 3443333 469999999999999999764
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.61 E-value=0.013 Score=44.33 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=56.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCC-eeeEEEEc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN-RMTACQLA 206 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g-~~i~v~~~ 206 (393)
.+-|.|-+.|+.. ...|..+|++||.|++.... ....+-.|.|.+..+|++||......+.| -.|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 5679999999885 66788899999999988751 23458999999999999999997776764 56666664
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.50 E-value=0.0051 Score=47.32 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=56.3
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeE-EeeeecCC--------CC-----CCccEEEEEecCHHHHHHHHHcCCCcc
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKA--------TG-----KPKGFCLFVYKTVDAAKKALEEPHKNF 313 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~-v~i~~d~~--------~g-----~~kg~aFV~F~~~~~A~~Al~~~~~~~ 313 (393)
.-|.|-+.|.. ....|...|++||.|.. +.+.+... .. ....+..|+|.+..+|.+||......|
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 36778888665 45677888999999987 32221000 00 135789999999999999999999999
Q ss_pred CCeEEEEEEcc
Q 016219 314 EGHILNCQRAI 324 (393)
Q Consensus 314 ~G~~l~V~~a~ 324 (393)
+|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988887763
No 395
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.21 E-value=0.042 Score=40.41 Aligned_cols=72 Identities=13% Similarity=0.004 Sum_probs=58.7
Q ss_pred cCeEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc-cCCeeeEE
Q 016219 130 HRKIFVHGLGWDT-K----AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (393)
Q Consensus 130 ~~~vfV~nLp~~~-t----~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~-~~g~~i~v 203 (393)
..+|+|.||+..+ . ...++.+|..|+++.....++.- .-..|.|.+.++|.+|-..+++. +.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999999755 2 25778999999998877665432 24799999999999999999866 89999999
Q ss_pred EEcc
Q 016219 204 QLAS 207 (393)
Q Consensus 204 ~~~~ 207 (393)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9986
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.05 E-value=0.012 Score=42.89 Aligned_cols=64 Identities=6% Similarity=-0.021 Sum_probs=48.4
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCC--ccEEEEEecCHHHHHHHHHcCC
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP--KGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~--kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
.-+|.|+.||+.+|++++.+.++..-.+.....+..+.+.+. -.-|||.|.+.++...-....+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 358999999999999999998887766555444433222221 2459999999999999998887
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.60 E-value=0.0079 Score=57.18 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=43.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 193 (393)
.|+|||. .|...++.+|.++|++||+|.++.+-.+. .-||.|+|.+.+++..++....
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 3899997 79999999999999999999998765433 2699999999999998876643
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.48 E-value=0.0069 Score=57.57 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=45.0
Q ss_pred ccceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 246 ~~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
..++|||. .|..+++.+|.++|++||+|..+.+..+. .-||.|+|.+.+++..++....
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 45799997 79999999999999999999999887643 3699999999999998876644
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.44 E-value=0.028 Score=43.16 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-------------CCCC-CcceEEEEEecCHHHHHHHHHcCCCcc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD-------------KVSG-KSKGYGFILFKTRSGARKALKEPQKKI 196 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~-------------~~~~-~~~g~afv~f~~~~~a~~a~~~~~~~~ 196 (393)
.-|.|-+.|+.. ...+-..|++||.|.+-.-+.. +... ....+..|+|.+..+|.+||......+
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 357888897665 4577789999999977321111 0011 134578999999999999999999889
Q ss_pred CCeeeEEEEcc
Q 016219 197 GNRMTACQLAS 207 (393)
Q Consensus 197 ~g~~i~v~~~~ 207 (393)
.|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988887763
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.35 E-value=0.018 Score=41.93 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=46.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHcCCCc
Q 016219 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK--SKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 130 ~~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~--~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
+-+|.|+.||+.+|++++.+.++.+-.+.....+..+.+-. .-.-|||.|.+.+++....+..++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 35799999999999999887777654443222222221111 1245999999999999999988865
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.89 E-value=1.1 Score=43.28 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCC
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 193 (393)
..++|+ +|..+...+|..+|+.||.| .|+.+-+. .|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 356665 99999999999999999965 77766553 69999999999999998775
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.48 E-value=1.7 Score=41.89 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=44.6
Q ss_pred cceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC
Q 016219 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (393)
Q Consensus 247 ~~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~ 310 (393)
...++|+ +|..|...+|.++|+.||.| .|+.+- ...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 3567776 99999999999999999954 444332 3469999999999999999875
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=50.89 E-value=33 Score=27.51 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=36.4
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEEeecCCCCCcceEEEEEecCHHH
Q 016219 132 KIFVHGLGW-D--------TKAETLIDAF--KQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSG 184 (393)
Q Consensus 132 ~vfV~nLp~-~--------~t~~~l~~~f--~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~ 184 (393)
++.|-|+|. . .....|++.| ..|.++ .|+.+..+ . -++|+|.|.|..--.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~-~-Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY-L-GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS-S-BEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC-C-CCceeEEEEecCChH
Confidence 466778886 2 4457899977 899887 56677665 2 378999999985544
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=43.55 E-value=81 Score=21.99 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=44.6
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcC
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~ 309 (393)
+-+-|-|+|..+-..++.-.....|---.|..+ .|-|.+.|.+.++-..|+..|
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 456788999999888888777888877777764 467999999999999999775
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.30 E-value=69 Score=25.66 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=36.8
Q ss_pred cceeeecCCCC-C--------CcHHHHHHHH--hcCCCeeEEeeeecCCCCCCccEEEEEecCHHHH
Q 016219 247 QRKIFVSNVGS-E--------LEPQKLLAFF--SKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302 (393)
Q Consensus 247 ~~~lfV~nLp~-~--------~t~~~L~~~F--~~~G~I~~v~i~~d~~~g~~kg~aFV~F~~~~~A 302 (393)
+-.+.|-|+|. . .+...|+..| +.|.++. |+.+.++ .-+.|+|.|.|.+--.-
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHH
Confidence 34778888887 2 2347899977 9999876 5555543 33589999999765443
No 406
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=32.31 E-value=6.6 Score=30.90 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCeeEEeeeecCCCCCCccEEEEEec
Q 016219 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297 (393)
Q Consensus 262 ~~L~~~F~~~G~I~~v~i~~d~~~g~~kg~aFV~F~ 297 (393)
+++.++|...|.|+.... .+|||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 345566777777776542 3899999875
No 407
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=30.26 E-value=11 Score=37.14 Aligned_cols=7 Identities=57% Similarity=0.710 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 016219 146 TLIDAFK 152 (393)
Q Consensus 146 ~l~~~f~ 152 (393)
.|..+|.
T Consensus 385 ~Ll~~F~ 391 (649)
T 3tj1_A 385 TLTTLFK 391 (649)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 408
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=26.69 E-value=14 Score=36.44 Aligned_cols=9 Identities=0% Similarity=-0.060 Sum_probs=4.1
Q ss_pred HHHHHhhcC
Q 016219 147 LIDAFKQYG 155 (393)
Q Consensus 147 l~~~f~~~G 155 (393)
...++.-|-
T Consensus 383 f~~Ll~~F~ 391 (649)
T 3tj1_A 383 FNTLTTLFK 391 (649)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344445554
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.40 E-value=1.4e+02 Score=19.70 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCcHHHHHHHHhcCCC-----eeEEeeeecCCCCCCccEEEEEecCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 016219 258 ELEPQKLLAFFSKYGE-----IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (393)
Q Consensus 258 ~~t~~~L~~~F~~~G~-----I~~v~i~~d~~~g~~kg~aFV~F~~~~~A~~Al~~~~-~~~~G~~l~V~~a 323 (393)
.+..-+|..++..-+. |-.|+|. -.|.||+-... .|..++..|+ ..+.|+.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 4566777777765544 4456653 34788888664 4677788887 7899999998875
No 410
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.21 E-value=82 Score=27.26 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=33.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCc
Q 016219 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (393)
Q Consensus 131 ~~vfV~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 195 (393)
.-+.|+|||+.++..-|..++.. ..+....++ -..+-|.+.+..-+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm----------------~QkEva~Rl~A~pg~k 158 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL----------------VQKEVAERMTARPKTP 158 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE----------------EEHHHHHHHTCCTTST
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE----------------eeeeeeeecccCCCCC
Confidence 46789999999999999999987 555433322 2356777766655543
No 411
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.66 E-value=61 Score=28.11 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=26.2
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeee
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~ 281 (393)
..+.|+|||+.++..-|..++.. +.+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46799999999999999999987 6666555443
No 412
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.22 E-value=35 Score=29.83 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=26.8
Q ss_pred ceeeecCCCCCCcHHHHHHHHhcCCCeeEEeeee
Q 016219 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (393)
Q Consensus 248 ~~lfV~nLp~~~t~~~L~~~F~~~G~I~~v~i~~ 281 (393)
..+.|+||||.++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3579999999999999999998655566555544
No 413
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.75 E-value=93 Score=21.77 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.8
Q ss_pred CeeEEeeeecCCCCCCccEEEEEecC
Q 016219 273 EIEEGPLGIDKATGKPKGFCLFVYKT 298 (393)
Q Consensus 273 ~I~~v~i~~d~~~g~~kg~aFV~F~~ 298 (393)
.|+.|+|..-...|+-+|||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887665678889999999974
No 414
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.48 E-value=2.1e+02 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.9
Q ss_pred cceEEEEEecCHHHHHHHHHcCCC
Q 016219 171 SKGYGFILFKTRSGARKALKEPQK 194 (393)
Q Consensus 171 ~~g~afv~f~~~~~a~~a~~~~~~ 194 (393)
-.||.||++......-.++....+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 689999999999888888776653
No 415
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.78 E-value=74 Score=28.82 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcC--------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHcCCCccCCe
Q 016219 133 IFVHGLGWDTKAETLIDAFKQYG--------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNR 199 (393)
Q Consensus 133 vfV~nLp~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~g~ 199 (393)
..|+|||+.++..-|..++..+. .+..+.++..+ +.|.+.+..-+.+..|+
T Consensus 145 ~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m~lmvQk----------------EvA~Rl~A~PGsk~yg~ 203 (353)
T 1i4w_A 145 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPS----------------TTARKLLARPGMHSRSK 203 (353)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEEEEEEEH----------------HHHHHHHCCTTSTTCCH
T ss_pred EEEEECCCchHHHHHHHHHHhccccccccccCcceEEEEeEH----------------HHHHHhcCCCCCccccH
No 416
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.11 E-value=1.1e+02 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=20.8
Q ss_pred CeeEEeeeecCCCCCCccEEEEEecC
Q 016219 273 EIEEGPLGIDKATGKPKGFCLFVYKT 298 (393)
Q Consensus 273 ~I~~v~i~~d~~~g~~kg~aFV~F~~ 298 (393)
.|+.|+|.+-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887655568889999999974
Done!