Query 016220
Match_columns 393
No_of_seqs 115 out of 130
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0260 RNA polymerase II, lar 98.8 1.6E-07 3.4E-12 104.9 16.0 22 5-26 1219-1240(1605)
2 KOG0260 RNA polymerase II, lar 98.7 3.7E-07 8.1E-12 102.0 15.4 7 97-103 1349-1355(1605)
3 KOG1999 RNA polymerase II tran 97.9 0.00018 3.9E-09 80.0 15.3 16 93-108 613-628 (1024)
4 KOG1999 RNA polymerase II tran 97.9 0.00035 7.7E-09 77.7 16.0 36 207-243 764-799 (1024)
5 PF12815 CTD: Spt5 C-terminal 97.7 7.6E-06 1.6E-10 71.6 0.0 18 322-339 103-121 (123)
6 PF12815 CTD: Spt5 C-terminal 97.3 5.8E-05 1.2E-09 66.2 0.0 8 280-287 63-70 (123)
7 PF03962 Mnd1: Mnd1 family; I 95.5 0.073 1.6E-06 49.4 8.5 62 56-118 67-128 (188)
8 PHA01750 hypothetical protein 95.2 0.085 1.8E-06 43.2 6.8 32 47-78 24-55 (75)
9 PF14197 Cep57_CLD_2: Centroso 94.9 0.03 6.5E-07 44.9 3.6 54 20-79 13-68 (69)
10 PF12592 DUF3763: Protein of u 94.5 0.18 3.8E-06 39.4 6.8 54 61-114 3-56 (57)
11 KOG4403 Cell surface glycoprot 94.5 0.065 1.4E-06 56.5 5.7 57 64-122 258-324 (575)
12 KOG3433 Protein involved in me 94.4 0.15 3.3E-06 48.5 7.5 62 59-120 82-143 (203)
13 PF07798 DUF1640: Protein of u 93.6 0.3 6.4E-06 44.4 7.6 78 41-118 46-149 (177)
14 COG4026 Uncharacterized protei 93.6 0.49 1.1E-05 46.7 9.4 72 47-118 101-181 (290)
15 PF08317 Spc7: Spc7 kinetochor 93.4 0.077 1.7E-06 52.4 3.7 58 64-121 208-265 (325)
16 KOG0933 Structural maintenance 92.8 0.34 7.4E-06 55.3 8.0 72 50-121 788-864 (1174)
17 PF07888 CALCOCO1: Calcium bin 92.8 0.29 6.2E-06 52.6 7.1 80 40-119 134-218 (546)
18 PRK09039 hypothetical protein; 92.5 0.75 1.6E-05 46.2 9.2 54 63-116 142-199 (343)
19 PF04156 IncA: IncA protein; 91.5 1.1 2.4E-05 40.2 8.3 56 63-118 93-148 (191)
20 PF10186 Atg14: UV radiation r 90.8 1.1 2.3E-05 41.9 7.8 14 103-116 136-149 (302)
21 KOG1103 Predicted coiled-coil 90.8 0.59 1.3E-05 48.7 6.5 28 97-124 242-269 (561)
22 PF03961 DUF342: Protein of un 90.7 1.2 2.6E-05 45.7 8.7 55 63-117 339-399 (451)
23 PRK10884 SH3 domain-containing 90.6 1 2.2E-05 42.7 7.5 30 90-119 136-165 (206)
24 PF08647 BRE1: BRE1 E3 ubiquit 90.5 1.5 3.2E-05 36.7 7.6 59 47-111 36-94 (96)
25 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.2 2.4 5.1E-05 37.0 8.9 58 62-119 28-85 (132)
26 PF11932 DUF3450: Protein of u 89.7 1.5 3.2E-05 41.7 7.8 81 39-120 47-144 (251)
27 COG1315 Uncharacterized conser 89.6 0.64 1.4E-05 49.9 5.8 103 10-120 363-481 (543)
28 PF12325 TMF_TATA_bd: TATA ele 89.6 2.9 6.4E-05 36.9 9.0 59 60-118 39-107 (120)
29 KOG4637 Adaptor for phosphoino 89.4 1.6 3.4E-05 45.8 8.3 38 63-100 158-195 (464)
30 PF08826 DMPK_coil: DMPK coile 89.4 1.8 3.9E-05 34.4 6.8 49 62-117 5-56 (61)
31 PF10186 Atg14: UV radiation r 89.3 2.5 5.4E-05 39.5 8.9 7 17-23 12-18 (302)
32 PF08340 DUF1732: Domain of un 89.1 1.5 3.3E-05 37.2 6.5 61 60-120 10-87 (87)
33 PF10168 Nup88: Nuclear pore c 88.6 0.66 1.4E-05 51.1 5.3 27 93-119 685-711 (717)
34 PF14257 DUF4349: Domain of un 88.5 1.2 2.5E-05 42.3 6.3 56 62-122 136-191 (262)
35 COG2433 Uncharacterized conser 88.3 2 4.2E-05 47.2 8.4 58 63-120 448-508 (652)
36 PF10212 TTKRSYEDQ: Predicted 88.1 1.4 3.1E-05 47.3 7.1 69 46-119 445-513 (518)
37 PF00038 Filament: Intermediat 88.1 3.5 7.6E-05 39.5 9.2 54 64-117 95-152 (312)
38 smart00787 Spc7 Spc7 kinetocho 88.0 1.1 2.4E-05 44.8 6.0 59 63-121 223-285 (312)
39 PF07139 DUF1387: Protein of u 87.7 2.2 4.7E-05 43.2 7.7 64 49-119 185-255 (302)
40 PF10704 DUF2508: Protein of u 87.6 3.6 7.8E-05 32.9 7.5 54 58-111 12-65 (71)
41 PF08581 Tup_N: Tup N-terminal 87.1 2.9 6.3E-05 34.6 7.0 58 61-119 7-76 (79)
42 PF13851 GAS: Growth-arrest sp 86.9 3.6 7.8E-05 38.7 8.3 68 52-119 8-81 (201)
43 PF04420 CHD5: CHD5-like prote 86.3 1.6 3.5E-05 39.5 5.5 50 61-119 43-92 (161)
44 PF13094 CENP-Q: CENP-Q, a CEN 86.3 3.8 8.2E-05 36.5 7.8 45 65-116 41-85 (160)
45 PF07407 Seadorna_VP6: Seadorn 86.3 2.1 4.6E-05 44.3 6.9 53 60-117 41-93 (420)
46 PRK11637 AmiB activator; Provi 86.2 3.8 8.3E-05 41.7 8.8 55 64-118 67-121 (428)
47 PF05667 DUF812: Protein of un 86.2 3.5 7.5E-05 44.9 8.8 29 90-118 394-426 (594)
48 PF09726 Macoilin: Transmembra 85.5 1.7 3.7E-05 47.9 6.3 13 107-119 552-564 (697)
49 KOG0977 Nuclear envelope prote 85.4 3.9 8.5E-05 44.3 8.7 57 61-117 172-232 (546)
50 KOG1962 B-cell receptor-associ 85.4 2.6 5.5E-05 40.9 6.7 57 61-117 154-210 (216)
51 PF05615 THOC7: Tho complex su 85.4 5.3 0.00011 34.8 8.1 57 63-119 51-107 (139)
52 KOG0432 Valyl-tRNA synthetase 84.9 0.56 1.2E-05 53.1 2.3 69 47-120 918-992 (995)
53 KOG0243 Kinesin-like protein [ 84.8 3.7 8E-05 47.4 8.5 64 56-119 446-509 (1041)
54 PF03962 Mnd1: Mnd1 family; I 84.7 4.9 0.00011 37.5 8.0 62 50-112 66-129 (188)
55 PRK04778 septation ring format 84.4 3.2 7E-05 44.1 7.5 94 25-118 239-335 (569)
56 PF10146 zf-C4H2: Zinc finger- 84.3 6 0.00013 38.3 8.7 20 96-115 84-103 (230)
57 PRK11546 zraP zinc resistance 84.2 11 0.00024 34.4 9.9 48 63-117 59-106 (143)
58 cd07653 F-BAR_CIP4-like The F- 84.1 5 0.00011 37.5 7.9 56 63-118 110-172 (251)
59 PF08317 Spc7: Spc7 kinetochor 84.1 4.3 9.4E-05 40.2 7.8 72 50-121 210-290 (325)
60 PF07544 Med9: RNA polymerase 83.9 4.7 0.0001 33.0 6.7 52 63-114 26-80 (83)
61 PF04156 IncA: IncA protein; 83.9 8.1 0.00017 34.7 8.9 51 63-113 100-150 (191)
62 PF03938 OmpH: Outer membrane 83.6 8.4 0.00018 33.4 8.6 22 63-84 48-69 (158)
63 PF11559 ADIP: Afadin- and alp 83.6 4.6 0.0001 35.4 7.0 36 66-101 88-123 (151)
64 KOG1937 Uncharacterized conser 83.4 6.2 0.00013 42.3 9.0 57 63-120 312-379 (521)
65 PF15188 CCDC-167: Coiled-coil 83.1 2.9 6.3E-05 35.3 5.2 55 63-117 3-60 (85)
66 PLN03188 kinesin-12 family pro 83.0 2.1 4.5E-05 50.2 5.8 22 97-118 1058-1090(1320)
67 PF06013 WXG100: Proteins of 1 82.8 15 0.00032 27.4 8.6 68 50-119 8-77 (86)
68 PF09726 Macoilin: Transmembra 82.6 4 8.7E-05 45.1 7.6 56 63-118 458-513 (697)
69 PF04111 APG6: Autophagy prote 82.6 2.4 5.2E-05 42.3 5.4 57 63-119 62-125 (314)
70 COG5124 Protein predicted to b 82.5 5.4 0.00012 38.3 7.4 63 59-121 83-148 (209)
71 KOG2391 Vacuolar sorting prote 82.2 0.97 2.1E-05 46.5 2.5 67 42-108 228-296 (365)
72 PF06160 EzrA: Septation ring 82.0 4.2 9E-05 43.4 7.2 94 25-118 235-331 (560)
73 KOG0995 Centromere-associated 81.9 7.3 0.00016 42.5 9.0 55 64-119 307-365 (581)
74 smart00787 Spc7 Spc7 kinetocho 81.7 4.3 9.3E-05 40.7 6.8 58 64-121 203-260 (312)
75 PRK10780 periplasmic chaperone 81.7 10 0.00022 34.1 8.5 19 63-81 55-73 (165)
76 PF00038 Filament: Intermediat 81.6 1.7 3.8E-05 41.6 3.9 55 47-103 59-113 (312)
77 PF04899 MbeD_MobD: MbeD/MobD 81.5 12 0.00026 30.5 8.1 65 47-112 4-68 (70)
78 PF05701 WEMBL: Weak chloropla 81.5 6.6 0.00014 41.6 8.4 73 47-119 279-356 (522)
79 PF06818 Fez1: Fez1; InterPro 80.8 2.9 6.2E-05 40.2 5.0 56 63-118 85-149 (202)
80 PF05557 MAD: Mitotic checkpoi 80.6 0.51 1.1E-05 51.1 0.0 60 63-122 369-428 (722)
81 PF03245 Phage_lysis: Bacterio 80.6 7.7 0.00017 34.0 7.2 60 63-122 5-64 (125)
82 KOG4643 Uncharacterized coiled 80.1 5.2 0.00011 46.3 7.5 50 63-119 175-224 (1195)
83 COG3879 Uncharacterized protei 80.1 5.4 0.00012 39.4 6.7 53 63-119 55-108 (247)
84 KOG0288 WD40 repeat protein Ti 80.0 5.7 0.00012 42.1 7.2 37 47-83 44-80 (459)
85 TIGR01843 type_I_hlyD type I s 79.7 9 0.0002 37.4 8.2 56 64-119 216-272 (423)
86 PF13935 Ead_Ea22: Ead/Ea22-li 79.7 5.8 0.00013 35.1 6.3 42 61-102 70-113 (139)
87 COG2096 cob(I)alamin adenosylt 79.7 2.7 5.8E-05 39.9 4.3 101 11-113 2-108 (184)
88 PF10211 Ax_dynein_light: Axon 79.3 15 0.00033 34.2 9.1 29 63-91 132-160 (189)
89 KOG4253 Tryptophan-rich basic 79.2 4.3 9.4E-05 38.2 5.5 41 63-112 49-89 (175)
90 PF12999 PRKCSH-like: Glucosid 79.1 6.5 0.00014 37.1 6.6 52 64-115 124-175 (176)
91 PF11594 Med28: Mediator compl 78.7 3.2 7E-05 36.4 4.3 51 60-118 37-87 (106)
92 cd07658 F-BAR_NOSTRIN The F-BA 78.5 6.8 0.00015 37.4 6.7 53 64-116 90-146 (239)
93 PF04111 APG6: Autophagy prote 78.3 12 0.00025 37.5 8.6 72 47-118 55-131 (314)
94 KOG4807 F-actin binding protei 78.3 5.4 0.00012 42.4 6.5 45 38-82 241-308 (593)
95 PF04048 Sec8_exocyst: Sec8 ex 78.2 16 0.00035 32.3 8.5 50 64-114 85-134 (142)
96 TIGR01730 RND_mfp RND family e 78.1 15 0.00032 34.4 8.8 80 39-120 54-136 (322)
97 COG5118 BDP1 Transcription ini 78.1 2.4 5.3E-05 44.6 3.9 50 49-98 415-474 (507)
98 PF07028 DUF1319: Protein of u 77.4 17 0.00037 32.9 8.4 73 39-112 28-122 (126)
99 PF07794 DUF1633: Protein of u 77.2 6.8 0.00015 42.7 6.9 54 64-122 667-720 (790)
100 PLN03229 acetyl-coenzyme A car 77.2 4.9 0.00011 45.1 6.1 81 33-118 502-589 (762)
101 PRK06569 F0F1 ATP synthase sub 77.2 11 0.00024 34.7 7.5 75 39-115 38-125 (155)
102 PF07798 DUF1640: Protein of u 77.0 13 0.00028 33.9 7.9 28 90-117 128-155 (177)
103 TIGR00606 rad50 rad50. This fa 76.9 8.2 0.00018 44.9 8.1 58 63-120 848-908 (1311)
104 PRK11637 AmiB activator; Provi 76.9 14 0.00031 37.6 9.0 31 77-107 220-250 (428)
105 PF05529 Bap31: B-cell recepto 76.9 17 0.00036 33.2 8.5 37 84-120 152-188 (192)
106 PF05701 WEMBL: Weak chloropla 76.8 9.4 0.0002 40.5 7.8 20 100-119 130-149 (522)
107 PF11855 DUF3375: Protein of u 76.8 13 0.00027 39.2 8.7 64 31-95 104-180 (478)
108 smart00502 BBC B-Box C-termina 76.7 23 0.00051 28.5 8.5 51 64-114 38-93 (127)
109 KOG2008 BTK-associated SH3-dom 76.4 1.9 4E-05 44.5 2.5 14 108-121 140-153 (426)
110 PRK14900 valS valyl-tRNA synth 76.4 10 0.00022 43.7 8.5 63 54-118 840-905 (1052)
111 KOG4460 Nuclear pore complex, 76.3 4.2 9.1E-05 44.6 5.2 28 63-90 660-687 (741)
112 KOG0977 Nuclear envelope prote 76.3 9.4 0.0002 41.5 7.7 24 96-119 165-188 (546)
113 COG5481 Uncharacterized conser 76.0 12 0.00026 30.4 6.4 55 61-116 7-61 (67)
114 cd07680 F-BAR_PACSIN1 The F-BA 75.9 4.7 0.0001 39.6 5.0 50 69-118 130-179 (258)
115 PF07246 Phlebovirus_NSM: Phle 75.8 6 0.00013 39.5 5.7 63 57-120 167-229 (264)
116 COG1422 Predicted membrane pro 75.7 12 0.00025 36.2 7.4 30 85-114 93-122 (201)
117 PF07888 CALCOCO1: Calcium bin 75.6 11 0.00024 40.9 8.1 18 63-80 169-186 (546)
118 PF13801 Metal_resist: Heavy-m 75.4 5.4 0.00012 31.7 4.4 16 66-81 60-75 (125)
119 PF11932 DUF3450: Protein of u 75.4 19 0.00041 34.2 8.8 30 63-92 61-90 (251)
120 TIGR02231 conserved hypothetic 75.4 11 0.00024 39.4 7.8 35 87-121 139-173 (525)
121 PRK13729 conjugal transfer pil 75.3 10 0.00022 40.7 7.6 48 55-116 73-120 (475)
122 PF01923 Cob_adeno_trans: Coba 75.1 4.9 0.00011 36.2 4.6 60 46-105 34-95 (163)
123 PF11559 ADIP: Afadin- and alp 75.1 17 0.00038 31.8 7.9 82 33-117 37-118 (151)
124 smart00502 BBC B-Box C-termina 75.0 4.2 9E-05 32.9 3.7 14 93-106 79-92 (127)
125 PF08657 DASH_Spc34: DASH comp 74.9 19 0.0004 35.6 8.8 40 63-102 178-217 (259)
126 PTZ00419 valyl-tRNA synthetase 74.9 10 0.00022 43.2 7.9 54 63-119 934-990 (995)
127 PF13801 Metal_resist: Heavy-m 74.9 27 0.00058 27.7 8.3 34 47-80 46-81 (125)
128 cd07597 BAR_SNX8 The Bin/Amphi 74.8 20 0.00043 34.4 8.8 55 64-118 119-184 (246)
129 PF10168 Nup88: Nuclear pore c 74.6 9.4 0.0002 42.4 7.4 22 96-117 635-656 (717)
130 cd07651 F-BAR_PombeCdc15_like 74.6 7.7 0.00017 36.4 5.9 13 106-118 149-161 (236)
131 PF05761 5_nucleotid: 5' nucle 74.5 18 0.00039 38.2 9.1 87 24-124 305-393 (448)
132 KOG3612 PHD Zn-finger protein 74.4 11 0.00024 41.1 7.6 40 46-85 430-480 (588)
133 PF12329 TMF_DNA_bd: TATA elem 74.1 31 0.00068 27.9 8.5 63 52-121 6-68 (74)
134 PRK10803 tol-pal system protei 74.1 9.5 0.0002 37.0 6.5 48 62-116 58-105 (263)
135 KOG2629 Peroxisomal membrane a 73.8 17 0.00038 36.9 8.4 51 65-118 136-186 (300)
136 TIGR03185 DNA_S_dndD DNA sulfu 73.8 17 0.00038 39.1 9.0 54 63-119 235-288 (650)
137 PF08912 Rho_Binding: Rho Bind 73.7 15 0.00033 30.1 6.6 59 47-119 1-67 (69)
138 PF06401 Alpha-2-MRAP_C: Alpha 73.5 12 0.00025 36.4 6.9 55 64-118 128-204 (214)
139 PRK05431 seryl-tRNA synthetase 73.5 18 0.00039 37.5 8.8 58 60-117 37-97 (425)
140 PRK05729 valS valyl-tRNA synth 73.4 8.8 0.00019 42.9 6.9 56 61-119 814-872 (874)
141 PF06273 eIF-4B: Plant specifi 73.3 6.1 0.00013 42.4 5.4 53 61-118 369-421 (492)
142 PF09730 BicD: Microtubule-ass 72.7 17 0.00037 40.7 8.8 55 62-119 370-431 (717)
143 PF12848 ABC_tran_2: ABC trans 72.5 15 0.00031 28.9 6.2 50 61-112 27-76 (85)
144 PF15456 Uds1: Up-regulated Du 72.4 22 0.00047 31.6 7.8 24 64-87 21-51 (124)
145 PF02403 Seryl_tRNA_N: Seryl-t 72.3 42 0.00091 27.8 9.1 58 60-117 38-98 (108)
146 PLN02943 aminoacyl-tRNA ligase 72.2 12 0.00025 42.7 7.6 55 61-118 892-949 (958)
147 KOG0642 Cell-cycle nuclear pro 72.1 2.4 5.3E-05 45.9 2.2 55 32-87 21-80 (577)
148 KOG4674 Uncharacterized conser 72.1 11 0.00024 46.0 7.6 57 63-119 445-501 (1822)
149 PF10376 Mei5: Double-strand r 71.9 20 0.00044 34.6 8.1 57 59-118 139-196 (221)
150 PF02050 FliJ: Flagellar FliJ 71.9 37 0.0008 26.8 8.4 26 60-85 14-39 (123)
151 PRK14127 cell division protein 71.9 19 0.00041 31.6 7.2 58 21-82 4-61 (109)
152 PRK15422 septal ring assembly 71.8 17 0.00037 30.6 6.6 49 70-118 16-64 (79)
153 PHA02562 46 endonuclease subun 71.7 21 0.00046 36.8 8.7 57 63-119 186-246 (562)
154 PF05791 Bacillus_HBL: Bacillu 71.7 16 0.00034 33.7 7.1 68 48-118 105-174 (184)
155 PF03938 OmpH: Outer membrane 71.6 26 0.00057 30.3 8.1 17 63-79 55-71 (158)
156 KOG0250 DNA repair protein RAD 71.6 19 0.0004 42.1 8.9 50 67-116 367-417 (1074)
157 PF06818 Fez1: Fez1; InterPro 71.4 15 0.00033 35.3 7.1 54 63-116 136-200 (202)
158 PF04094 DUF390: Protein of un 71.3 11 0.00023 42.6 6.7 37 79-115 417-453 (828)
159 PF09766 FimP: Fms-interacting 71.2 12 0.00026 38.0 6.7 48 71-120 88-135 (355)
160 KOG2662 Magnesium transporters 71.1 16 0.00036 38.5 7.8 58 59-118 188-245 (414)
161 PF09969 DUF2203: Uncharacteri 71.1 13 0.00028 32.7 6.1 84 51-141 15-105 (120)
162 PF14662 CCDC155: Coiled-coil 71.0 18 0.00039 34.8 7.4 28 89-116 84-111 (193)
163 PRK10884 SH3 domain-containing 70.7 19 0.00042 34.3 7.6 57 61-117 96-156 (206)
164 PF13870 DUF4201: Domain of un 70.6 12 0.00027 33.7 6.1 18 101-118 146-163 (177)
165 PF08614 ATG16: Autophagy prot 70.6 24 0.00051 32.5 8.0 17 64-80 122-138 (194)
166 PF13863 DUF4200: Domain of un 70.5 39 0.00085 28.4 8.7 56 63-118 51-106 (126)
167 KOG0963 Transcription factor/C 70.3 20 0.00043 39.7 8.4 53 64-119 291-343 (629)
168 KOG0971 Microtubule-associated 70.1 14 0.00031 42.8 7.5 72 43-118 277-357 (1243)
169 KOG3478 Prefoldin subunit 6, K 70.0 20 0.00044 32.1 7.0 51 70-123 63-113 (120)
170 KOG3667 STAT protein [Transcri 70.0 16 0.00036 40.7 7.8 79 39-117 133-213 (682)
171 KOG0249 LAR-interacting protei 70.0 21 0.00047 40.4 8.7 90 27-118 122-248 (916)
172 PF12711 Kinesin-relat_1: Kine 69.6 18 0.00039 30.7 6.4 17 64-80 23-39 (86)
173 COG1579 Zn-ribbon protein, pos 69.6 19 0.00042 35.3 7.5 56 64-119 58-115 (239)
174 KOG4378 Nuclear protein COP1 [ 69.5 2.4 5.2E-05 46.0 1.4 49 25-80 621-672 (673)
175 TIGR00414 serS seryl-tRNA synt 69.4 27 0.00058 36.2 8.9 56 62-117 41-100 (418)
176 PF14817 HAUS5: HAUS augmin-li 69.3 16 0.00034 40.4 7.5 71 50-120 350-437 (632)
177 PF08826 DMPK_coil: DMPK coile 69.0 24 0.00053 28.1 6.6 49 60-115 13-61 (61)
178 PF08606 Prp19: Prp19/Pso4-lik 68.9 25 0.00053 29.0 6.8 56 64-119 14-69 (70)
179 PF03980 Nnf1: Nnf1 ; InterPr 68.8 30 0.00064 29.0 7.6 31 49-79 21-51 (109)
180 PRK11546 zraP zinc resistance 68.7 4.9 0.00011 36.7 3.1 90 38-133 43-132 (143)
181 KOG0225 Pyruvate dehydrogenase 68.6 16 0.00035 38.2 7.0 59 47-109 258-349 (394)
182 PF06120 Phage_HK97_TLTM: Tail 68.5 27 0.00058 35.4 8.4 18 64-81 87-104 (301)
183 PF10018 Med4: Vitamin-D-recep 68.4 22 0.00049 32.7 7.4 59 47-112 3-62 (188)
184 PF06705 SF-assemblin: SF-asse 68.4 14 0.00031 35.0 6.3 48 63-116 90-137 (247)
185 KOG2341 TATA box binding prote 68.3 15 0.00032 40.2 7.0 36 84-119 458-493 (563)
186 PF14712 Snapin_Pallidin: Snap 68.3 55 0.0012 26.4 8.8 58 61-118 31-89 (92)
187 PF14966 DNA_repr_REX1B: DNA r 68.1 15 0.00032 31.2 5.7 72 41-113 13-97 (97)
188 PF07106 TBPIP: Tat binding pr 68.0 30 0.00066 31.0 7.9 25 90-114 113-137 (169)
189 KOG4603 TBP-1 interacting prot 67.8 23 0.0005 34.0 7.3 95 24-118 72-180 (201)
190 COG1196 Smc Chromosome segrega 67.8 25 0.00054 40.6 9.1 60 59-118 226-285 (1163)
191 PF11598 COMP: Cartilage oligo 67.7 16 0.00036 27.6 5.2 20 63-82 20-39 (45)
192 PRK13531 regulatory ATPase Rav 67.7 11 0.00024 40.5 5.8 53 62-114 445-497 (498)
193 cd07652 F-BAR_Rgd1 The F-BAR ( 67.5 28 0.00061 33.2 8.1 16 99-114 131-146 (234)
194 PF04645 DUF603: Protein of un 67.5 22 0.00047 33.9 7.1 73 41-116 86-161 (181)
195 PF07412 Geminin: Geminin; In 67.3 13 0.00027 35.9 5.6 43 50-98 119-161 (200)
196 KOG2391 Vacuolar sorting prote 67.3 33 0.0007 35.8 8.8 54 61-114 221-274 (365)
197 PF06160 EzrA: Septation ring 67.3 23 0.00049 38.0 8.1 57 63-119 349-405 (560)
198 PLN02678 seryl-tRNA synthetase 66.9 28 0.00061 36.8 8.6 57 61-117 43-102 (448)
199 PF02181 FH2: Formin Homology 66.8 8.5 0.00018 37.9 4.6 54 63-116 279-332 (370)
200 PF05837 CENP-H: Centromere pr 66.7 32 0.00069 29.4 7.4 15 88-102 53-67 (106)
201 PF04949 Transcrip_act: Transc 66.7 20 0.00043 33.5 6.6 77 38-114 48-147 (159)
202 PTZ00419 valyl-tRNA synthetase 66.7 14 0.00031 41.9 6.9 18 64-81 928-945 (995)
203 PF15079 DUF4546: Domain of un 66.6 13 0.00027 35.6 5.4 49 55-103 49-99 (205)
204 KOG0979 Structural maintenance 66.6 14 0.00029 43.0 6.6 47 32-78 175-222 (1072)
205 PF05384 DegS: Sensor protein 66.5 23 0.0005 32.7 7.0 78 39-116 20-107 (159)
206 PF14362 DUF4407: Domain of un 66.5 29 0.00063 33.6 8.0 27 61-87 145-171 (301)
207 COG1196 Smc Chromosome segrega 66.4 27 0.00059 40.4 9.0 56 63-118 861-916 (1163)
208 PF07106 TBPIP: Tat binding pr 66.4 12 0.00026 33.6 5.0 16 102-117 118-133 (169)
209 KOG2751 Beclin-like protein [S 66.3 18 0.00039 38.5 7.0 68 47-114 148-218 (447)
210 PF06156 DUF972: Protein of un 66.2 9.8 0.00021 33.0 4.3 17 104-120 40-56 (107)
211 KOG2129 Uncharacterized conser 66.1 14 0.00031 39.5 6.2 55 63-117 251-306 (552)
212 PF00831 Ribosomal_L29: Riboso 66.1 18 0.00039 27.8 5.3 46 60-108 9-54 (58)
213 PRK02224 chromosome segregatio 65.8 30 0.00065 38.0 8.9 80 39-118 455-555 (880)
214 PRK09343 prefoldin subunit bet 65.8 26 0.00057 30.5 6.9 60 49-118 38-110 (121)
215 cd07652 F-BAR_Rgd1 The F-BAR ( 65.7 15 0.00033 35.0 5.9 60 47-108 116-176 (234)
216 PF12329 TMF_DNA_bd: TATA elem 65.2 16 0.00035 29.6 5.1 55 50-118 13-72 (74)
217 PF10267 Tmemb_cc2: Predicted 65.2 20 0.00043 37.6 7.0 71 47-120 213-289 (395)
218 TIGR02894 DNA_bind_RsfA transc 65.0 36 0.00079 31.9 8.0 52 63-114 102-153 (161)
219 PF08702 Fib_alpha: Fibrinogen 64.8 66 0.0014 29.1 9.4 37 82-118 93-129 (146)
220 COG3074 Uncharacterized protei 64.6 50 0.0011 27.7 7.8 62 46-122 8-79 (79)
221 PF04912 Dynamitin: Dynamitin 64.3 10 0.00022 38.4 4.7 47 59-105 95-144 (388)
222 PRK00409 recombination and DNA 64.2 22 0.00047 39.8 7.5 14 144-157 637-650 (782)
223 PF12709 Kinetocho_Slk19: Cent 64.1 32 0.0007 29.4 6.8 27 93-119 49-75 (87)
224 PRK04778 septation ring format 64.0 12 0.00027 39.8 5.4 34 86-119 383-416 (569)
225 PF09730 BicD: Microtubule-ass 63.9 26 0.00057 39.3 8.0 15 64-78 54-68 (717)
226 TIGR00636 PduO_Nterm ATP:cob(I 63.9 11 0.00024 35.0 4.5 67 46-112 33-99 (171)
227 COG3416 Uncharacterized protei 63.8 86 0.0019 31.0 10.5 24 97-120 52-75 (233)
228 KOG0994 Extracellular matrix g 63.7 24 0.00053 42.0 7.8 72 46-118 1619-1700(1758)
229 PF15290 Syntaphilin: Golgi-lo 63.6 13 0.00029 37.7 5.3 74 19-105 89-168 (305)
230 cd07656 F-BAR_srGAP The F-BAR 63.6 28 0.00062 33.6 7.3 55 63-117 122-193 (241)
231 cd07605 I-BAR_IMD Inverse (I)- 63.5 9.1 0.0002 36.9 4.0 18 101-118 153-170 (223)
232 KOG3771 Amphiphysin [Intracell 63.4 94 0.002 33.5 11.5 206 7-247 66-334 (460)
233 COG4920 Predicted membrane pro 63.4 5.3 0.00012 39.2 2.4 36 71-107 63-105 (249)
234 PLN02943 aminoacyl-tRNA ligase 63.3 18 0.00039 41.3 6.8 31 63-93 887-918 (958)
235 PF15456 Uds1: Up-regulated Du 63.1 24 0.00052 31.3 6.2 30 88-117 76-105 (124)
236 PF10473 CENP-F_leu_zip: Leuci 63.1 55 0.0012 29.8 8.6 19 63-81 57-75 (140)
237 PF08598 Sds3: Sds3-like; Int 62.9 9 0.0002 34.9 3.7 47 49-101 8-54 (205)
238 KOG0999 Microtubule-associated 62.4 24 0.00051 39.2 7.1 61 59-119 51-126 (772)
239 KOG3119 Basic region leucine z 62.4 8.4 0.00018 37.7 3.6 23 97-119 233-255 (269)
240 PF15254 CCDC14: Coiled-coil d 62.2 38 0.00083 38.6 8.9 37 46-82 438-479 (861)
241 PF08776 VASP_tetra: VASP tetr 62.2 15 0.00033 27.4 4.0 25 52-77 14-38 (40)
242 PF14335 DUF4391: Domain of un 62.1 15 0.00033 34.5 5.1 42 63-116 180-221 (221)
243 cd00193 t_SNARE Soluble NSF (N 62.1 47 0.001 23.7 6.6 28 91-118 32-59 (60)
244 PLN02381 valyl-tRNA synthetase 62.1 25 0.00054 40.7 7.7 54 62-118 1001-1057(1066)
245 KOG4673 Transcription factor T 62.0 31 0.00067 39.2 8.0 73 47-121 414-488 (961)
246 COG4842 Uncharacterized protei 62.0 41 0.00088 28.1 7.1 70 49-120 10-81 (97)
247 PF14197 Cep57_CLD_2: Centroso 61.9 40 0.00088 27.2 6.8 25 94-118 41-65 (69)
248 PF05739 SNARE: SNARE domain; 61.9 36 0.00078 25.2 6.2 55 66-120 5-59 (63)
249 PF10079 DUF2317: Uncharacteri 61.8 14 0.00031 39.7 5.4 80 19-102 394-475 (542)
250 COG4942 Membrane-bound metallo 61.8 17 0.00036 38.5 5.8 17 153-169 290-306 (420)
251 PF08700 Vps51: Vps51/Vps67; 61.7 43 0.00093 26.3 6.9 53 63-118 31-83 (87)
252 KOG2751 Beclin-like protein [S 61.7 39 0.00085 36.1 8.4 82 40-121 105-214 (447)
253 PF09325 Vps5: Vps5 C terminal 61.7 48 0.001 30.3 8.1 54 63-116 133-186 (236)
254 PF05911 DUF869: Plant protein 61.7 12 0.00027 42.0 5.1 20 11-30 542-561 (769)
255 PLN02320 seryl-tRNA synthetase 61.6 39 0.00084 36.5 8.5 53 63-116 105-160 (502)
256 KOG0240 Kinesin (SMY1 subfamil 61.4 25 0.00054 38.7 7.1 106 12-117 301-424 (607)
257 PF10473 CENP-F_leu_zip: Leuci 61.3 38 0.00082 30.9 7.2 42 63-104 29-70 (140)
258 PF12824 MRP-L20: Mitochondria 61.2 23 0.00049 32.8 5.9 24 93-116 130-163 (164)
259 PF12777 MT: Microtubule-bindi 61.1 4 8.6E-05 40.7 1.1 59 46-104 218-281 (344)
260 TIGR00219 mreC rod shape-deter 60.8 26 0.00057 34.5 6.7 25 96-120 87-111 (283)
261 PRK13169 DNA replication intia 60.7 14 0.0003 32.4 4.3 17 103-119 39-55 (110)
262 cd00427 Ribosomal_L29_HIP Ribo 60.1 34 0.00073 26.2 5.8 49 57-108 5-53 (57)
263 PF14182 YgaB: YgaB-like prote 60.1 27 0.00059 29.4 5.6 50 27-81 4-56 (79)
264 PHA02562 46 endonuclease subun 59.9 58 0.0013 33.6 9.2 20 93-112 379-398 (562)
265 PF11740 KfrA_N: Plasmid repli 59.8 81 0.0018 26.2 8.5 59 49-117 61-119 (120)
266 KOG0933 Structural maintenance 59.7 14 0.00031 43.0 5.1 54 65-118 843-903 (1174)
267 cd07644 I-BAR_IMD_BAIAP2L2 Inv 59.5 19 0.00042 35.1 5.4 79 38-118 71-162 (215)
268 PRK10265 chaperone-modulator p 59.5 12 0.00025 31.6 3.5 19 63-81 76-94 (101)
269 PLN03086 PRLI-interacting fact 59.4 29 0.00062 38.0 7.2 44 71-116 17-60 (567)
270 PF03961 DUF342: Protein of un 59.4 33 0.00071 35.4 7.4 57 63-119 346-408 (451)
271 PRK11519 tyrosine kinase; Prov 59.4 25 0.00055 38.5 6.9 19 95-113 365-383 (719)
272 PF06548 Kinesin-related: Kine 59.2 36 0.00079 36.6 7.7 92 22-116 171-318 (488)
273 cd07596 BAR_SNX The Bin/Amphip 59.2 67 0.0014 28.4 8.4 20 64-83 116-135 (218)
274 KOG4825 Component of synaptic 59.0 20 0.00044 39.0 5.8 74 26-117 162-243 (666)
275 PLN02769 Probable galacturonos 58.9 11 0.00023 41.8 3.9 12 110-121 263-274 (629)
276 PLN02381 valyl-tRNA synthetase 58.8 23 0.0005 41.0 6.7 18 64-81 996-1013(1066)
277 PF08172 CASP_C: CASP C termin 58.6 12 0.00025 36.7 3.8 31 87-117 94-124 (248)
278 PLN03229 acetyl-coenzyme A car 58.5 29 0.00062 39.3 7.1 74 47-120 647-732 (762)
279 smart00721 BAR BAR domain. 58.5 63 0.0014 29.2 8.2 14 64-77 147-160 (239)
280 PRK11578 macrolide transporter 58.4 55 0.0012 32.4 8.5 19 63-81 111-129 (370)
281 PF10146 zf-C4H2: Zinc finger- 58.4 62 0.0014 31.5 8.6 10 107-116 88-97 (230)
282 PF15003 HAUS2: HAUS augmin-li 58.3 44 0.00096 33.8 7.8 58 57-118 52-118 (277)
283 PF07464 ApoLp-III: Apolipopho 58.3 52 0.0011 30.3 7.7 53 63-118 61-117 (155)
284 KOG4715 SWI/SNF-related matrix 58.3 15 0.00032 38.2 4.6 85 16-119 218-302 (410)
285 PF15186 TEX13: Testis-express 58.3 61 0.0013 30.3 8.1 50 68-120 102-151 (152)
286 KOG0239 Kinesin (KAR3 subfamil 58.1 41 0.00088 37.4 8.2 44 77-120 267-313 (670)
287 TIGR03755 conj_TIGR03755 integ 58.1 25 0.00054 37.3 6.3 72 26-113 323-394 (418)
288 cd04766 HTH_HspR Helix-Turn-He 57.9 36 0.00078 27.5 6.0 20 97-116 69-88 (91)
289 TIGR00012 L29 ribosomal protei 57.9 38 0.00083 25.8 5.7 46 59-107 6-51 (55)
290 PF09755 DUF2046: Uncharacteri 57.9 34 0.00073 35.0 7.0 22 97-118 182-203 (310)
291 TIGR01000 bacteriocin_acc bact 57.7 28 0.00061 35.8 6.6 21 63-83 241-261 (457)
292 cd07605 I-BAR_IMD Inverse (I)- 57.4 65 0.0014 31.2 8.5 43 75-117 174-217 (223)
293 PF10498 IFT57: Intra-flagella 57.4 47 0.001 34.2 8.0 55 63-117 264-318 (359)
294 PF02388 FemAB: FemAB family; 57.2 47 0.001 34.0 8.0 51 63-117 247-297 (406)
295 KOG4133 tRNA splicing endonucl 57.1 10 0.00023 38.1 3.2 90 21-114 14-139 (290)
296 TIGR01069 mutS2 MutS2 family p 56.9 33 0.00072 38.4 7.4 12 145-156 626-637 (771)
297 PF02646 RmuC: RmuC family; I 56.9 37 0.00081 33.6 7.0 58 64-121 12-69 (304)
298 PF04888 SseC: Secretion syste 56.7 79 0.0017 30.7 9.1 55 63-117 249-303 (306)
299 TIGR01000 bacteriocin_acc bact 56.7 40 0.00087 34.7 7.5 20 98-117 289-308 (457)
300 TIGR01005 eps_transp_fam exopo 56.7 17 0.00036 39.5 5.0 26 63-88 199-224 (754)
301 KOG4196 bZIP transcription fac 56.6 73 0.0016 29.3 8.2 54 64-118 46-99 (135)
302 PF10241 KxDL: Uncharacterized 56.6 95 0.0021 25.7 8.3 30 89-118 53-82 (88)
303 PF08647 BRE1: BRE1 E3 ubiquit 56.5 77 0.0017 26.5 7.9 54 51-104 8-63 (96)
304 KOG3809 Microtubule-binding pr 56.1 42 0.00091 36.3 7.6 76 47-122 480-575 (583)
305 smart00397 t_SNARE Helical reg 55.9 66 0.0014 23.2 6.6 28 91-118 38-65 (66)
306 PF08397 IMD: IRSp53/MIM homol 55.8 1.1E+02 0.0025 28.6 9.7 43 75-117 163-206 (219)
307 PF05266 DUF724: Protein of un 55.8 62 0.0013 30.6 7.9 25 95-119 154-178 (190)
308 PF05633 DUF793: Protein of un 55.8 17 0.00038 38.0 4.7 31 50-80 345-384 (389)
309 COG1322 Predicted nuclease of 55.8 63 0.0014 34.5 8.8 39 80-118 151-189 (448)
310 PF12252 SidE: Dot/Icm substra 55.6 20 0.00044 42.2 5.5 104 11-118 1206-1309(1439)
311 PRK09841 cryptic autophosphory 55.6 31 0.00068 37.8 6.8 37 79-115 349-385 (726)
312 PF00430 ATP-synt_B: ATP synth 55.5 1.2E+02 0.0026 25.3 8.9 80 39-118 27-117 (132)
313 PF04645 DUF603: Protein of un 55.4 45 0.00098 31.9 6.9 52 64-118 74-130 (181)
314 PF10174 Cast: RIM-binding pro 55.4 56 0.0012 37.1 8.8 61 49-116 327-387 (775)
315 PF05667 DUF812: Protein of un 55.2 32 0.0007 37.6 6.8 19 64-82 348-366 (594)
316 PF11365 DUF3166: Protein of u 55.1 77 0.0017 27.5 7.7 73 42-114 1-90 (96)
317 PF04977 DivIC: Septum formati 55.1 32 0.00069 26.3 5.0 14 64-77 37-50 (80)
318 smart00304 HAMP HAMP (Histidin 55.1 31 0.00068 21.0 4.2 18 94-111 33-50 (53)
319 PF10392 COG5: Golgi transport 55.0 95 0.0021 27.1 8.5 37 66-102 73-109 (132)
320 PLN03184 chloroplast Hsp70; Pr 54.9 72 0.0016 35.0 9.4 20 97-116 615-634 (673)
321 PF15397 DUF4618: Domain of un 54.9 74 0.0016 31.8 8.6 51 69-119 42-100 (258)
322 PRK05771 V-type ATP synthase s 54.9 51 0.0011 35.6 8.2 57 63-119 227-297 (646)
323 PF04977 DivIC: Septum formati 54.8 28 0.0006 26.7 4.7 32 67-98 19-50 (80)
324 KOG4348 Adaptor protein CMS/SE 54.8 26 0.00056 38.0 5.8 32 72-117 594-625 (627)
325 KOG0250 DNA repair protein RAD 54.5 22 0.00047 41.6 5.5 59 64-122 357-416 (1074)
326 KOG2070 Guanine nucleotide exc 54.4 15 0.00032 40.2 4.0 38 61-105 619-656 (661)
327 COG1792 MreC Cell shape-determ 54.3 65 0.0014 31.9 8.2 72 39-121 35-111 (284)
328 PHA00327 minor capsid protein 54.3 13 0.00028 35.3 3.2 31 30-62 44-74 (187)
329 PF00429 TLV_coat: ENV polypro 54.3 32 0.00069 37.3 6.5 70 46-118 428-513 (561)
330 PLN03188 kinesin-12 family pro 54.3 36 0.00078 40.6 7.3 70 50-119 1132-1237(1320)
331 PF04799 Fzo_mitofusin: fzo-li 54.1 32 0.0007 32.5 5.7 71 28-100 84-162 (171)
332 PRK10361 DNA recombination pro 54.1 67 0.0014 34.6 8.7 38 63-100 72-109 (475)
333 PRK13182 racA polar chromosome 54.0 45 0.00098 31.1 6.7 57 60-120 87-145 (175)
334 TIGR02231 conserved hypothetic 54.0 34 0.00073 35.9 6.5 29 94-122 139-167 (525)
335 cd07648 F-BAR_FCHO The F-BAR ( 54.0 26 0.00057 33.3 5.3 10 107-116 150-159 (261)
336 PRK07417 arogenate dehydrogena 53.9 22 0.00047 33.9 4.7 23 63-85 237-259 (279)
337 PF01627 Hpt: Hpt domain; Int 53.8 90 0.002 23.4 7.3 50 64-113 26-88 (90)
338 PF15254 CCDC14: Coiled-coil d 53.7 29 0.00063 39.6 6.2 47 16-62 334-396 (861)
339 TIGR00634 recN DNA repair prot 53.6 42 0.0009 35.7 7.2 14 47-60 278-291 (563)
340 PF00015 MCPsignal: Methyl-acc 53.6 72 0.0016 28.1 7.6 38 46-83 86-125 (213)
341 smart00030 CLb CLUSTERIN Beta 53.4 35 0.00076 33.2 6.0 55 47-103 20-74 (206)
342 PRK00306 50S ribosomal protein 53.4 64 0.0014 25.3 6.5 50 58-110 9-58 (66)
343 COG3551 Uncharacterized protei 53.3 39 0.00084 35.3 6.6 40 47-86 245-284 (402)
344 PF14942 Muted: Organelle biog 53.3 37 0.0008 30.9 5.8 39 64-102 106-145 (145)
345 COG4942 Membrane-bound metallo 53.3 1.5E+02 0.0032 31.7 11.0 37 66-102 200-236 (420)
346 PRK03918 chromosome segregatio 53.3 69 0.0015 35.1 8.9 16 64-79 206-221 (880)
347 PTZ00421 coronin; Provisional 53.2 13 0.00029 39.1 3.5 21 62-82 457-477 (493)
348 PF08397 IMD: IRSp53/MIM homol 53.2 53 0.0012 30.8 7.1 20 96-115 144-163 (219)
349 PRK09578 periplasmic multidrug 53.1 83 0.0018 31.4 8.8 71 46-119 98-172 (385)
350 PF05405 Mt_ATP-synt_B: Mitoch 53.1 44 0.00096 29.7 6.2 16 63-78 42-57 (163)
351 PRK05291 trmE tRNA modificatio 52.7 53 0.0011 34.1 7.6 66 51-117 140-207 (449)
352 TIGR02680 conserved hypothetic 52.7 50 0.0011 39.2 8.2 20 64-83 282-301 (1353)
353 TIGR01554 major_cap_HK97 phage 52.7 36 0.00079 34.0 6.2 8 66-73 7-14 (378)
354 KOG4674 Uncharacterized conser 52.6 50 0.0011 40.8 8.2 56 63-118 417-472 (1822)
355 PF09738 DUF2051: Double stran 52.5 77 0.0017 32.1 8.5 49 63-118 117-165 (302)
356 COG3027 zapA Cell division pro 52.5 65 0.0014 28.0 6.9 46 63-114 59-104 (105)
357 KOG3595 Dyneins, heavy chain [ 52.5 39 0.00085 40.2 7.4 58 63-120 932-989 (1395)
358 cd00089 HR1 Protein kinase C-r 52.4 58 0.0013 25.5 6.2 53 63-118 7-67 (72)
359 PRK12704 phosphodiesterase; Pr 52.3 78 0.0017 34.0 8.9 19 98-116 115-133 (520)
360 CHL00154 rpl29 ribosomal prote 52.2 49 0.0011 26.6 5.7 46 60-108 14-59 (67)
361 PRK15178 Vi polysaccharide exp 52.2 56 0.0012 34.7 7.7 55 64-118 285-339 (434)
362 COG3599 DivIVA Cell division i 52.0 86 0.0019 30.3 8.4 35 46-80 27-66 (212)
363 PF08898 DUF1843: Domain of un 51.9 19 0.00042 28.3 3.3 20 103-122 34-53 (53)
364 PF13166 AAA_13: AAA domain 51.9 1.1E+02 0.0023 32.9 9.9 18 64-81 383-400 (712)
365 PF07851 TMPIT: TMPIT-like pro 51.8 33 0.00072 35.3 5.9 35 64-104 45-79 (330)
366 PF07111 HCR: Alpha helical co 51.7 45 0.00097 37.7 7.2 76 41-117 485-566 (739)
367 cd07655 F-BAR_PACSIN The F-BAR 51.6 82 0.0018 30.4 8.2 18 68-85 129-146 (258)
368 smart00503 SynN Syntaxin N-ter 51.6 50 0.0011 26.8 5.9 25 92-116 45-69 (117)
369 PRK06342 transcription elongat 51.5 32 0.00069 31.6 5.2 51 62-124 38-88 (160)
370 PF10481 CENP-F_N: Cenp-F N-te 51.4 46 0.00099 34.0 6.6 81 39-119 30-128 (307)
371 TIGR03017 EpsF chain length de 51.3 36 0.00077 34.3 6.0 22 62-83 175-196 (444)
372 PF15619 Lebercilin: Ciliary p 51.3 86 0.0019 29.7 8.1 51 51-101 101-154 (194)
373 PF06657 Cep57_MT_bd: Centroso 51.1 1.4E+02 0.003 24.6 8.6 54 63-118 22-75 (79)
374 cd07672 F-BAR_PSTPIP2 The F-BA 51.1 47 0.001 32.1 6.5 45 71-118 120-165 (240)
375 PRK00846 hypothetical protein; 51.0 42 0.00091 27.9 5.3 32 47-78 16-47 (77)
376 KOG4171 Adenylate/guanylate ki 51.0 31 0.00067 38.5 5.9 75 14-95 341-420 (671)
377 PRK11556 multidrug efflux syst 51.0 82 0.0018 32.2 8.5 77 39-119 115-196 (415)
378 PF05278 PEARLI-4: Arabidopsis 51.0 44 0.00095 33.6 6.4 29 92-120 192-220 (269)
379 TIGR01069 mutS2 MutS2 family p 50.9 51 0.0011 37.0 7.6 23 64-86 538-560 (771)
380 PF05700 BCAS2: Breast carcino 50.9 1E+02 0.0022 29.2 8.6 20 63-82 141-160 (221)
381 TIGR03545 conserved hypothetic 50.9 56 0.0012 35.5 7.7 28 71-98 190-217 (555)
382 PF10359 Fmp27_WPPW: RNA pol I 50.8 55 0.0012 34.4 7.5 62 62-123 167-230 (475)
383 smart00806 AIP3 Actin interact 50.8 13 0.00027 39.5 2.8 57 40-99 63-119 (426)
384 PF05465 Halo_GVPC: Halobacter 50.8 18 0.0004 25.4 2.7 21 62-82 3-23 (32)
385 PF05622 HOOK: HOOK protein; 50.5 5.2 0.00011 43.6 0.0 58 62-119 360-417 (713)
386 cd07632 BAR_APPL2 The Bin/Amph 50.5 42 0.00091 32.8 6.0 39 78-116 105-144 (215)
387 PF12777 MT: Microtubule-bindi 50.3 43 0.00094 33.5 6.4 58 63-120 219-276 (344)
388 KOG4809 Rab6 GTPase-interactin 50.3 53 0.0012 36.4 7.3 56 63-118 329-384 (654)
389 PRK05907 hypothetical protein; 50.3 10 0.00022 37.8 1.9 30 66-95 170-199 (311)
390 COG5185 HEC1 Protein involved 50.2 45 0.00098 36.5 6.7 57 63-119 335-401 (622)
391 TIGR02971 heterocyst_DevB ABC 50.0 35 0.00077 32.8 5.5 57 63-120 95-155 (327)
392 PF05529 Bap31: B-cell recepto 49.9 41 0.00088 30.7 5.7 22 98-119 152-173 (192)
393 KOG2077 JNK/SAPK-associated pr 49.8 57 0.0012 36.5 7.5 10 200-209 530-539 (832)
394 PF06120 Phage_HK97_TLTM: Tail 49.8 33 0.00072 34.8 5.5 27 50-76 78-106 (301)
395 PF05266 DUF724: Protein of un 49.7 83 0.0018 29.7 7.8 24 93-116 145-168 (190)
396 TIGR01462 greA transcription e 49.7 43 0.00094 29.8 5.7 20 105-124 54-73 (151)
397 KOG0239 Kinesin (KAR3 subfamil 49.7 53 0.0012 36.5 7.4 33 51-83 225-259 (670)
398 PF15294 Leu_zip: Leucine zipp 49.7 47 0.001 33.5 6.4 43 63-119 130-172 (278)
399 PRK01885 greB transcription el 49.6 41 0.0009 30.6 5.6 20 105-124 59-78 (157)
400 PF12711 Kinesin-relat_1: Kine 49.4 47 0.001 28.2 5.5 10 105-114 75-84 (86)
401 PRK11448 hsdR type I restricti 49.3 42 0.0009 39.3 6.8 24 96-119 187-210 (1123)
402 PF04484 DUF566: Family of unk 49.3 76 0.0017 32.0 7.9 30 88-117 219-249 (311)
403 PF05008 V-SNARE: Vesicle tran 49.3 1.3E+02 0.0027 23.6 8.8 52 64-117 27-78 (79)
404 KOG0971 Microtubule-associated 49.2 40 0.00087 39.4 6.4 16 6-21 259-274 (1243)
405 PF12709 Kinetocho_Slk19: Cent 49.2 35 0.00075 29.2 4.7 24 63-86 54-77 (87)
406 KOG2896 UV radiation resistanc 49.1 59 0.0013 34.2 7.2 27 42-68 83-109 (377)
407 KOG1029 Endocytic adaptor prot 49.1 39 0.00085 38.9 6.3 15 64-78 485-499 (1118)
408 cd07673 F-BAR_FCHO2 The F-BAR 49.0 49 0.0011 32.3 6.4 15 99-113 136-150 (269)
409 PF13747 DUF4164: Domain of un 48.9 82 0.0018 26.4 6.8 62 49-119 4-65 (89)
410 KOG4739 Uncharacterized protei 48.8 56 0.0012 32.3 6.6 66 37-107 65-132 (233)
411 TIGR02473 flagell_FliJ flagell 48.7 55 0.0012 27.6 5.9 41 60-100 70-110 (141)
412 PF09006 Surfac_D-trimer: Lung 48.7 25 0.00054 27.0 3.4 27 61-87 2-28 (46)
413 COG1842 PspA Phage shock prote 48.7 1.1E+02 0.0025 29.6 8.7 32 86-117 106-137 (225)
414 PLN02939 transferase, transfer 48.7 31 0.00067 40.1 5.6 53 50-117 157-211 (977)
415 PRK02119 hypothetical protein; 48.6 41 0.00089 27.2 4.9 28 47-74 12-39 (73)
416 PRK10780 periplasmic chaperone 48.6 1E+02 0.0023 27.6 8.0 7 17-23 25-31 (165)
417 PF05278 PEARLI-4: Arabidopsis 48.5 49 0.0011 33.3 6.3 49 64-113 213-262 (269)
418 PF07989 Microtub_assoc: Micro 48.4 66 0.0014 26.3 6.0 20 100-119 50-69 (75)
419 KOG3119 Basic region leucine z 48.4 48 0.001 32.6 6.2 55 66-120 195-249 (269)
420 PF06295 DUF1043: Protein of u 48.2 74 0.0016 27.9 6.8 22 61-82 28-49 (128)
421 PF05103 DivIVA: DivIVA protei 48.2 22 0.00048 29.9 3.4 36 48-85 24-59 (131)
422 TIGR00634 recN DNA repair prot 48.0 45 0.00098 35.4 6.4 23 94-116 354-376 (563)
423 TIGR01010 BexC_CtrB_KpsE polys 48.0 1.3E+02 0.0028 29.8 9.2 56 62-117 174-231 (362)
424 PF04102 SlyX: SlyX; InterPro 48.0 43 0.00092 26.6 4.8 16 48-63 8-23 (69)
425 cd07685 F-BAR_Fes The F-BAR (F 48.0 1.1E+02 0.0025 30.3 8.6 24 95-118 133-156 (237)
426 PRK00461 rpmC 50S ribosomal pr 47.9 88 0.0019 26.5 6.9 50 57-109 7-56 (87)
427 KOG0957 PHD finger protein [Ge 47.9 27 0.00059 38.3 4.7 79 39-118 432-512 (707)
428 PF10118 Metal_hydrol: Predict 47.9 43 0.00094 32.4 5.8 34 50-83 46-80 (253)
429 COG0525 ValS Valyl-tRNA synthe 47.8 66 0.0014 37.1 7.9 57 60-119 816-875 (877)
430 PF12252 SidE: Dot/Icm substra 47.5 34 0.00074 40.5 5.6 22 94-115 1168-1194(1439)
431 PLN02372 violaxanthin de-epoxi 47.4 90 0.002 33.5 8.3 20 91-110 408-427 (455)
432 KOG2483 Upstream transcription 47.4 80 0.0017 31.0 7.5 67 51-121 62-140 (232)
433 cd07655 F-BAR_PACSIN The F-BAR 47.4 25 0.00054 33.9 4.1 11 33-43 76-86 (258)
434 PRK04863 mukB cell division pr 47.4 58 0.0013 39.4 7.7 58 62-119 989-1046(1486)
435 COG5374 Uncharacterized conser 47.3 72 0.0016 30.8 7.0 20 20-43 90-109 (192)
436 PTZ00454 26S protease regulato 47.3 30 0.00064 35.7 4.8 24 96-119 39-62 (398)
437 KOG2962 Prohibitin-related mem 47.3 40 0.00088 34.0 5.5 48 70-124 205-253 (322)
438 PHA02607 wac fibritin; Provisi 47.2 31 0.00068 36.9 5.0 62 50-117 195-256 (454)
439 KOG1318 Helix loop helix trans 47.2 40 0.00088 35.7 5.8 79 24-119 227-323 (411)
440 PRK11448 hsdR type I restricti 47.2 40 0.00088 39.4 6.3 12 63-74 147-158 (1123)
441 cd07647 F-BAR_PSTPIP The F-BAR 47.1 50 0.0011 31.3 5.9 11 107-117 153-163 (239)
442 TIGR03752 conj_TIGR03752 integ 47.1 89 0.0019 33.8 8.3 25 63-87 85-113 (472)
443 PF03148 Tektin: Tektin family 47.1 1E+02 0.0022 31.6 8.5 69 50-118 209-290 (384)
444 PF07716 bZIP_2: Basic region 47.0 37 0.0008 25.4 4.1 29 90-118 22-50 (54)
445 PF14282 FlxA: FlxA-like prote 47.0 1E+02 0.0022 26.3 7.2 54 60-119 21-77 (106)
446 PF13851 GAS: Growth-arrest sp 47.0 65 0.0014 30.4 6.6 21 97-117 147-167 (201)
447 cd07307 BAR The Bin/Amphiphysi 46.6 1.7E+02 0.0037 24.5 8.5 15 100-114 135-149 (194)
448 PF15035 Rootletin: Ciliary ro 46.5 1.4E+02 0.003 28.1 8.7 35 84-118 139-177 (182)
449 PF07889 DUF1664: Protein of u 46.5 83 0.0018 28.3 6.9 71 38-117 34-106 (126)
450 COG2433 Uncharacterized conser 46.5 44 0.00094 37.3 6.1 55 63-121 441-495 (652)
451 KOG0981 DNA topoisomerase I [R 46.4 58 0.0013 36.4 6.9 75 39-120 622-703 (759)
452 PF06098 Radial_spoke_3: Radia 46.4 50 0.0011 33.3 6.1 90 16-106 125-215 (291)
453 TIGR02289 M3_not_pepF oligoend 46.4 63 0.0014 34.2 7.2 58 63-120 182-249 (549)
454 PF07321 YscO: Type III secret 46.2 95 0.0021 28.5 7.4 53 57-109 59-111 (152)
455 PRK06800 fliH flagellar assemb 46.2 29 0.00063 33.8 4.2 54 30-86 47-101 (228)
456 PRK05759 F0F1 ATP synthase sub 46.2 1.1E+02 0.0024 26.6 7.6 46 39-84 32-82 (156)
457 PTZ00009 heat shock 70 kDa pro 46.2 1.7E+02 0.0038 31.9 10.5 9 7-15 474-482 (653)
458 TIGR01005 eps_transp_fam exopo 46.1 1.2E+02 0.0025 33.2 9.3 16 99-114 375-390 (754)
459 KOG0999 Microtubule-associated 46.1 78 0.0017 35.4 7.8 57 61-117 11-67 (772)
460 COG0497 RecN ATPase involved i 46.0 27 0.00059 38.1 4.5 16 47-62 274-289 (557)
461 PF06013 WXG100: Proteins of 1 45.9 76 0.0016 23.5 5.7 67 50-118 15-83 (86)
462 TIGR00999 8a0102 Membrane Fusi 45.8 24 0.00053 32.4 3.6 52 65-120 16-67 (265)
463 PF02994 Transposase_22: L1 tr 45.7 15 0.00033 37.5 2.4 30 97-126 162-191 (370)
464 cd07656 F-BAR_srGAP The F-BAR 45.6 1.1E+02 0.0024 29.6 8.2 73 49-121 83-159 (241)
465 PF10205 KLRAQ: Predicted coil 45.5 77 0.0017 27.8 6.3 25 97-121 51-75 (102)
466 PF02841 GBP_C: Guanylate-bind 45.4 1.7E+02 0.0038 28.6 9.5 35 61-95 214-248 (297)
467 PF08172 CASP_C: CASP C termin 45.3 30 0.00065 33.9 4.3 40 59-98 94-133 (248)
468 PF11221 Med21: Subunit 21 of 45.2 84 0.0018 28.0 6.7 31 88-118 106-136 (144)
469 cd07675 F-BAR_FNBP1L The F-BAR 45.1 30 0.00066 34.1 4.3 20 100-119 134-153 (252)
470 PF06705 SF-assemblin: SF-asse 45.1 92 0.002 29.7 7.4 31 67-97 36-66 (247)
471 COG1340 Uncharacterized archae 45.0 1.1E+02 0.0023 31.3 8.1 28 89-116 182-209 (294)
472 PF04350 PilO: Pilus assembly 44.9 25 0.00054 29.7 3.3 12 65-76 6-17 (144)
473 PRK06800 fliH flagellar assemb 44.7 1.3E+02 0.0029 29.4 8.3 51 61-111 48-102 (228)
474 cd04766 HTH_HspR Helix-Turn-He 44.7 31 0.00068 27.9 3.7 20 63-82 70-89 (91)
475 KOG0946 ER-Golgi vesicle-tethe 44.7 58 0.0013 37.5 6.8 84 31-117 674-768 (970)
476 KOG4661 Hsp27-ERE-TATA-binding 44.6 64 0.0014 36.2 6.9 25 93-117 678-705 (940)
477 PF06248 Zw10: Centromere/kine 44.6 40 0.00086 36.0 5.4 20 99-118 121-140 (593)
478 PRK01433 hscA chaperone protei 44.6 1.3E+02 0.0029 32.6 9.3 12 48-59 484-495 (595)
479 PF08614 ATG16: Autophagy prot 44.6 1.5E+02 0.0033 27.3 8.5 24 92-115 136-159 (194)
480 PF11853 DUF3373: Protein of u 44.5 18 0.00038 39.0 2.8 17 66-82 32-48 (489)
481 KOG4196 bZIP transcription fac 44.4 21 0.00046 32.6 2.9 25 59-83 82-106 (135)
482 PF15483 DUF4641: Domain of un 44.4 19 0.00041 38.3 2.9 42 36-82 400-442 (445)
483 PF09731 Mitofilin: Mitochondr 44.4 86 0.0019 33.2 7.8 44 63-106 346-398 (582)
484 PF02601 Exonuc_VII_L: Exonucl 44.4 74 0.0016 31.0 6.8 16 67-82 167-182 (319)
485 TIGR01667 YCCS_YHJK integral m 44.4 85 0.0018 34.9 8.0 50 63-117 297-346 (701)
486 PF12018 DUF3508: Domain of un 44.4 1E+02 0.0022 30.4 7.7 57 68-124 48-104 (281)
487 PF14988 DUF4515: Domain of un 44.4 94 0.002 29.6 7.3 67 40-117 34-102 (206)
488 PF14735 HAUS4: HAUS augmin-li 44.3 72 0.0016 31.3 6.7 53 66-118 175-227 (238)
489 PRK12704 phosphodiesterase; Pr 44.3 1.3E+02 0.0027 32.5 9.0 18 97-114 121-138 (520)
490 TIGR02420 dksA RNA polymerase- 44.2 1.3E+02 0.0029 25.5 7.5 12 88-99 38-49 (110)
491 PF06144 DNA_pol3_delta: DNA p 44.2 53 0.0011 28.1 5.2 74 13-112 92-170 (172)
492 TIGR00606 rad50 rad50. This fa 44.1 87 0.0019 36.9 8.4 67 50-118 971-1039(1311)
493 PF10458 Val_tRNA-synt_C: Valy 44.1 1.4E+02 0.0029 23.3 7.0 54 63-116 2-65 (66)
494 PF15035 Rootletin: Ciliary ro 44.1 1.4E+02 0.003 28.1 8.2 70 46-117 85-158 (182)
495 PRK10636 putative ABC transpor 44.1 77 0.0017 34.3 7.5 74 47-120 557-632 (638)
496 PRK09859 multidrug efflux syst 44.0 34 0.00075 34.1 4.6 71 50-120 91-164 (385)
497 KOG3228 Uncharacterized conser 44.0 40 0.00086 33.0 4.8 38 61-102 129-166 (226)
498 PRK10722 hypothetical protein; 43.9 40 0.00087 33.6 4.9 68 31-102 138-209 (247)
499 PF11348 DUF3150: Protein of u 43.9 61 0.0013 31.8 6.1 51 51-101 54-117 (257)
500 cd07307 BAR The Bin/Amphiphysi 43.9 54 0.0012 27.5 5.1 77 26-103 86-166 (194)
No 1
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=98.76 E-value=1.6e-07 Score=104.90 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=14.1
Q ss_pred Ccceeeeeeeeeeeeccchhhh
Q 016220 5 GAHKLEIRCTLIFTCTLDFLFR 26 (393)
Q Consensus 5 ~~~~~~~~~~~~~~~~~d~~~~ 26 (393)
.+-||+|||-+.+--+=|...+
T Consensus 1219 na~klv~r~ri~~~~e~D~~l~ 1240 (1605)
T KOG0260|consen 1219 NAEKLVLRLRIAKEEEDDVFLK 1240 (1605)
T ss_pred CCcceEEEEEecCccchhHHHH
Confidence 3568888887766655555443
No 2
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=98.67 E-value=3.7e-07 Score=102.01 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 016220 97 VMEKNYI 103 (393)
Q Consensus 97 ~MEKnli 103 (393)
.++-||+
T Consensus 1349 T~~g~lm 1355 (1605)
T KOG0260|consen 1349 TARGHLM 1355 (1605)
T ss_pred hccccee
Confidence 3344443
No 3
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=97.95 E-value=0.00018 Score=79.98 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATE 108 (393)
Q Consensus 93 Eq~q~MEKnlisMarE 108 (393)
..++.+|.|.|-+++|
T Consensus 613 h~r~~~En~Gv~vck~ 628 (1024)
T KOG1999|consen 613 HSRKNLENGGVFVCKE 628 (1024)
T ss_pred eehhhcccCCeEEEec
Confidence 3344555555544443
No 4
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=97.88 E-value=0.00035 Score=77.71 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016220 207 ASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP 243 (393)
Q Consensus 207 ~sr~P~Y~ss~sP~Yg~sRsPgYd~~kgP~Yd~~R~P 243 (393)
.|..|.|++ .+|.++-+|+|.++...+|.+|-.|+|
T Consensus 764 Gs~tp~~~s-~tpl~~~s~tp~~~~~~Tp~~dG~rTP 799 (1024)
T KOG1999|consen 764 GSSTPMYGS-NTPLWGGSRTPARDGGATPSHDGSRTP 799 (1024)
T ss_pred CCcCccCCC-CCCCCCcccCccccCCCCcCCCCCcCC
Confidence 444455554 455555555555555555555555555
No 5
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A.
Probab=97.71 E-value=7.6e-06 Score=71.64 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCCCC-CCCCCCCCCCCCC
Q 016220 322 GPGYD-LQRGQGYDMRRAP 339 (393)
Q Consensus 322 tPgY~-~~~~~~y~~~~sP 339 (393)
+|+.. ..+++++.....|
T Consensus 103 TPg~~~~~~TPg~~~~~~p 121 (123)
T PF12815_consen 103 TPGAYNNAPTPGASAYSAP 121 (123)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 55443 2555554444444
No 6
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A.
Probab=97.29 E-value=5.8e-05 Score=66.18 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 016220 280 QRGPNYDM 287 (393)
Q Consensus 280 sr~PsYda 287 (393)
+++|.|..
T Consensus 63 ~~TPa~~~ 70 (123)
T PF12815_consen 63 SRTPAYGS 70 (123)
T ss_dssp --------
T ss_pred CCCccCcC
Confidence 34555443
No 7
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=95.51 E-value=0.073 Score=49.39 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 56 QHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 56 ~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
++.++..|++||+.+++++..++..|+-+|+.+.+. +.++.+-+.|-.+-.|+++|++||.+
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556689999999999999999999999888777 66666777788888888888888874
No 8
>PHA01750 hypothetical protein
Probab=95.18 E-value=0.085 Score=43.17 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R 78 (393)
++++|+.++++.-|.+++.|||+|+.||+...
T Consensus 24 lYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 24 LYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998765
No 9
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.93 E-value=0.03 Score=44.90 Aligned_cols=54 Identities=19% Similarity=-0.026 Sum_probs=41.3
Q ss_pred ccchhhhHHhhhhhhcccc--ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 016220 20 TLDFLFRQVYSKALHFGHP--WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRG 79 (393)
Q Consensus 20 ~~d~~~~~~~~k~~h~~h~--l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~ 79 (393)
.+|...+++.. |+.+. |.+||.+ ....|+.|..+ +.-|++|++.|++||++.|.
T Consensus 13 rLd~~~rk~~~---~~~~~k~L~~ERd~-~~~~l~~a~~e--~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 13 RLDSLTRKNSV---HEIENKRLRRERDS-AERQLGDAYEE--NNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 35666666655 44433 8999975 77778888888 56699999999999999885
No 10
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=94.48 E-value=0.18 Score=39.43 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
.-++++|+.+.++|++.|+-|.--..-++-.-|=+..||.-|+.++..||.||.
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999999999999999999999999999999985
No 11
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=94.47 E-value=0.065 Score=56.48 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhhh--------hhhhhccc-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 64 LKIWSKNAITFHLCRGT--------YEYEKKFY-ND-HLESLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a--------~EyEKK~~-~e-~~Eq~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
..++++|+++|.++|.. +++|+|.. +- +-|-+... .|=.+| +|||.||.+|.+||+.
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~-e~e~~r-kelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGV-ENETSR-KELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcch-hHHHHH-HHHHHHHHHHHHHHHH
Confidence 56788888888888875 33444444 00 11111122 233455 6999999999998865
No 12
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.45 E-value=0.15 Score=48.55 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
++-.|.++|+.++|-+-+++--||-+|+++-+--|--..++|.|.++-.++|-||.||++..
T Consensus 82 ~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 82 VLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44558999999999999999999999999877655555999999999999999999999864
No 13
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.62 E-value=0.3 Score=44.42 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=43.6
Q ss_pred ccCCCchhHHHHHHHHhHHHHH----------HHHHHHHHHHHHHhhhhhhhhhh-ccc-----------hhhHHHHHHH
Q 016220 41 CESSSPQYYFLHLAFQHCYCAI----------FLKIWSKNAITFHLCRGTYEYEK-KFY-----------NDHLESLQVM 98 (393)
Q Consensus 41 ~e~~~~~~~~~~~~~~~~~~~~----------l~~Eid~lrqElqr~R~a~EyEK-K~~-----------~e~~Eq~q~M 98 (393)
.+-++.+.+.++.++.|||..+ |+.|++.|++|+..+|.-+..|= |.+ .+.-|..+.+
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~ 125 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQ 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444557777788888888766 34555555555444444433321 111 1333444555
Q ss_pred HHHHH----HHHHHHHHHHHHHhc
Q 016220 99 EKNYI----TMATEVEKLRAELMN 118 (393)
Q Consensus 99 EKnli----sMarEvEKLRaElan 118 (393)
|..+- .|..||..||+||+.
T Consensus 126 ~~ki~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 126 ELKIQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 356777888888875
No 14
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.59 E-value=0.49 Score=46.70 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=57.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHH---------HHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNA---------ITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lr---------qElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
-.++++++-|||+.+++++.|..|+ .-+..||--|+.+.|-+-++++.+..+|-.+-.+-.+++.|+.|++
T Consensus 101 EhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 101 EHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998888776 4455667778888888888888888888888877777777777755
Q ss_pred c
Q 016220 118 N 118 (393)
Q Consensus 118 n 118 (393)
-
T Consensus 181 ~ 181 (290)
T COG4026 181 R 181 (290)
T ss_pred H
Confidence 3
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.38 E-value=0.077 Score=52.35 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
+.||+.||+||......|+.-|+.-.++-+|++..+..+-.+..++.+|++||+++++
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888888888888888888888888888888888764
No 16
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.85 E-value=0.34 Score=55.31 Aligned_cols=72 Identities=17% Similarity=0.054 Sum_probs=61.3
Q ss_pred HHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 50 FLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 50 ~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
+++.++|||+++. ...+++.-++|++++-..+|-.++..-.+--|++.||+++-++..|+.+|++.|.+++.
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 5667777777766 36678888899999999999999988888889999999999999999999999988654
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.82 E-value=0.29 Score=52.63 Aligned_cols=80 Identities=10% Similarity=-0.011 Sum_probs=57.8
Q ss_pred cccCCCchhHHHHHHHHhHH---HHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 40 ICESSSPQYYFLHLAFQHCY---CAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 40 ~~e~~~~~~~~~~~~~~~~~---~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
++-+..-|+.+|+...||.. +.. |+.|.+.|+.++.++.+.++-+++...++.++.+.|.+..-.|..|.+.|..
T Consensus 134 V~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 134 VTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred EehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446777777777733 332 6888888888888888888888888888888888777777777777777777
Q ss_pred HHhcC
Q 016220 115 ELMNA 119 (393)
Q Consensus 115 Elana 119 (393)
+++.+
T Consensus 214 q~~e~ 218 (546)
T PF07888_consen 214 QLAEA 218 (546)
T ss_pred HHHHH
Confidence 66543
No 18
>PRK09039 hypothetical protein; Validated
Probab=92.49 E-value=0.75 Score=46.24 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM----arEvEKLRaEl 116 (393)
|++||+.||..|..+-++|+.=++...+.-+|++.+++.|-.. +.|++++|.|+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7999999999999999999998888899999999999988766 56888888887
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.50 E-value=1.1 Score=40.20 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|..|++.+++.++..-+.++..|+...+..++.+..+.++.++..++++++.|+.+
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777666666666666666666666666666554
No 20
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.84 E-value=1.1 Score=41.91 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 016220 103 ITMATEVEKLRAEL 116 (393)
Q Consensus 103 isMarEvEKLRaEl 116 (393)
-.+..++++-|..|
T Consensus 136 ~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 136 SQLQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 21
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=90.78 E-value=0.59 Score=48.71 Aligned_cols=28 Identities=32% Similarity=0.262 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 016220 97 VMEKNYITMATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElanae~~~~ 124 (393)
..||-|-.+-.|+|.|||||...+|+-+
T Consensus 242 qvek~i~EfdiEre~LRAel~ree~r~K 269 (561)
T KOG1103|consen 242 QVEKLIEEFDIEREFLRAELEREEKRQK 269 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888899999999877666543
No 22
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=90.72 E-value=1.2 Score=45.70 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEK------KFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEK------K~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|++|++.+++++.+++..++.=+ +...+..++.+.+.+.+..+.+++++|..+|.
T Consensus 339 l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 339 LEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443333 23455666666666666666666666665554
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.59 E-value=1 Score=42.71 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++-++.+.+.+-|...-.|++.|++|+.+.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666777776666543
No 24
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=90.48 E-value=1.5 Score=36.70 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 111 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEK 111 (393)
+..++..+-|+ ...++.-+|.|..|+..++..+. .+.+.++|++.+|+++++...++||
T Consensus 36 l~~Ek~kadqk--yfa~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 36 LEAEKAKADQK--YFAAMRSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444 44467778888888888888775 4678899999999999999998886
No 25
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.18 E-value=2.4 Score=37.00 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.++.+|+.+.+..+.+..-||.|--.+++.++.++.+.+-+-.+-.+|..|+.++..+
T Consensus 28 ~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 28 SLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888888888889999999999999999999999999999999998887654
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.71 E-value=1.5 Score=41.66 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=60.6
Q ss_pred ccccCCCchhHHHHHHHHhHHHH-----HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH------
Q 016220 39 WICESSSPQYYFLHLAFQHCYCA-----IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT------ 107 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~-----~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar------ 107 (393)
|..|++ .|..+++...+|+... .|...++.+++|+..+-..++--++...+..-.|..|.+.|-....
T Consensus 47 ~~~e~~-~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~ 125 (251)
T PF11932_consen 47 WDDEKQ-ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFL 125 (251)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 666665 4666776666664333 3677888888888888888888888888888888888888877543
Q ss_pred ------HHHHHHHHHhcCC
Q 016220 108 ------EVEKLRAELMNAP 120 (393)
Q Consensus 108 ------EvEKLRaElanae 120 (393)
-|++||+.|.+++
T Consensus 126 ~~eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 126 LEERQERLARLRAMLDDAD 144 (251)
T ss_pred hHHHHHHHHHHHHhhhccC
Confidence 4788888887764
No 27
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=89.65 E-value=0.64 Score=49.89 Aligned_cols=103 Identities=19% Similarity=0.080 Sum_probs=68.2
Q ss_pred eeeeeeeee--------eccchhhhHHhhhhh------hc-cccccccCCCchhHHHHHHHHhHHHHHH-HHHHHHHHHH
Q 016220 10 EIRCTLIFT--------CTLDFLFRQVYSKAL------HF-GHPWICESSSPQYYFLHLAFQHCYCAIF-LKIWSKNAIT 73 (393)
Q Consensus 10 ~~~~~~~~~--------~~~d~~~~~~~~k~~------h~-~h~l~~e~~~~~~~~~~~~~~~~~~~~l-~~Eid~lrqE 73 (393)
+|+|++.+. +++|+-.+++=++-. -+ +||+|-||-.+|+.+|++--+.|+++.+ ..++..+.
T Consensus 363 ~Ilc~g~~g~Ivg~~~~a~~~v~a~~iGs~i~~~~t~~~vG~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~-- 440 (543)
T COG1315 363 KILCVGKKGKIVGGNTEAFEDVYAREIGSDIGSLKTAIDVGMDPEIVERLKELTEEISLHEERLKKLTKLLVALVKVK-- 440 (543)
T ss_pred EEEEecCcccccccchhhhHhhhHhhcCCcccccceeeEeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 588887653 455666666655433 23 3888888877788888777777666653 23333321
Q ss_pred HHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 74 FHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 74 lqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
.-.-||++-.+.=++++..+.-+|++-.+|||.++||++..
T Consensus 441 ------i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lq 481 (543)
T COG1315 441 ------IESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQ 481 (543)
T ss_pred ------HHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 12234445555568899999999999999999999987643
No 28
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.55 E-value=2.9 Score=36.87 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh---hhhhccchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHhc
Q 016220 60 CAIFLKIWSKNAITFHLCRGTY---EYEKKFYNDHLESLQVMEKNYITM-------ATEVEKLRAELMN 118 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~---EyEKK~~~e~~Eq~q~MEKnlisM-------arEvEKLRaElan 118 (393)
...|.++.|.+++||.++-.-. .-.++...++-.+++.+++.+.++ .-|||.||++|++
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3446677777777777766555 334445555666777777776665 4689999999875
No 29
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=89.44 E-value=1.6 Score=45.78 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEK 100 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEK 100 (393)
+.+|-+..+||||+.|++||-=..+--..-||.+..|+
T Consensus 158 ~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~ 195 (464)
T KOG4637|consen 158 LYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQEN 195 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 47788899999999999998655555555566666554
No 30
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.41 E-value=1.8 Score=34.39 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=30.1
Q ss_pred HHHHHHH---HHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 62 IFLKIWS---KNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 62 ~l~~Eid---~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.|.+||. .|+.||.++|++ |...-.++|..|+..-.+-+||+.|+-|+.
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~-------n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSA-------NLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556664 577788887754 333334556666666666666666666654
No 31
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.26 E-value=2.5 Score=39.47 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=3.1
Q ss_pred eeeccch
Q 016220 17 FTCTLDF 23 (393)
Q Consensus 17 ~~~~~d~ 23 (393)
|.|.-++
T Consensus 12 ~~C~~C~ 18 (302)
T PF10186_consen 12 FYCANCV 18 (302)
T ss_pred eECHHHH
Confidence 4444444
No 32
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=89.07 E-value=1.5 Score=37.17 Aligned_cols=61 Identities=21% Similarity=0.117 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh---ccchhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEK---KFYNDHLES--------------LQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEK---K~~~e~~Eq--------------~q~MEKnlisMarEvEKLRaElanae 120 (393)
|.-+.+||+.|+-=++++|..++-++ ..+.+.+=| .-.+-+-.|.|-.||||+|..+.|-|
T Consensus 10 k~DI~EEl~RL~sH~~~f~~~l~~~~~~vGrkLdFl~QEm~RE~NTigSKs~~~~i~~~vv~~K~~iEkiREQvqNiE 87 (87)
T PF08340_consen 10 KADISEELVRLKSHLKQFRELLESEGEPVGRKLDFLLQEMNREINTIGSKSNDAEISNLVVEMKTEIEKIREQVQNIE 87 (87)
T ss_pred HcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhccHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45578888888888888998888765 223333322 23455667889999999999999854
No 33
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.59 E-value=0.66 Score=51.10 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.|++.+...|-.|+.||+.|..+|.+-
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777653
No 34
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=88.53 E-value=1.2 Score=42.34 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
-+.+.|++++++..|++.-++ | ++.+|.+-++|+-|-.+-.|||.|+.++...+++
T Consensus 136 D~~arl~~l~~~~~rl~~ll~--k---a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLE--K---AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--h---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999888 2 2278889999999999999999999999776554
No 35
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.26 E-value=2 Score=47.19 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYND---HLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e---~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
|+.||+.|+.||.++|.-++.|...+-| .-+....+||+|..=.++||.|..+|+...
T Consensus 448 ~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 448 LKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777655443332 223455789999999999999999988765
No 36
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.14 E-value=1.4 Score=47.28 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=49.4
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.|...++.+.++ |..+..||..+.+.++|+-..++--|+.+- +|+..|=.-|++|...+.|.+.||.+.
T Consensus 445 aL~~rL~~aE~e--k~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 445 ALQKRLESAEKE--KESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666555 566778888888888887777766666554 477778778888887777777777653
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.08 E-value=3.5 Score=39.53 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT----EVEKLRAELM 117 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar----EvEKLRaEla 117 (393)
.+++..|..||..+|..+|-|...++++-.+.+.+++.|--|-+ ||+.||..+.
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 44555555666666666666666666666666666665554433 4555555543
No 38
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.00 E-value=1.1 Score=44.79 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI----TMATEVEKLRAELMNAPN 121 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli----sMarEvEKLRaElanae~ 121 (393)
.+.+|+.+++|++.++..|+--++...+..++.+..|+-+- -=..||.+|++++...++
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888888888888888877332 235688888887765543
No 39
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=87.66 E-value=2.2 Score=43.20 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHHHHHHHhHHHH------HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Q 016220 49 YFLHLAFQHCYCA------IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT-EVEKLRAELMNA 119 (393)
Q Consensus 49 ~~~~~~~~~~~~~------~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar-EvEKLRaElana 119 (393)
-.|+.+|.||+.. .|++|||.+++|-+..=.+ +-+.-|.++.|=.--+.|+- +|-.|||||..+
T Consensus 185 k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~a-------RqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~f 255 (302)
T PF07139_consen 185 KKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDA-------RQKKAEELKRLTDRASQMSEEQLAELRADIKHF 255 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3567777777643 3799999999986654221 11223444444455555653 467788888754
No 40
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=87.59 E-value=3.6 Score=32.86 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 016220 58 CYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 111 (393)
Q Consensus 58 ~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEK 111 (393)
.+...|..+|+.+++|++++|..||.---..-+.+-|+++-|+.+.=+-+|+-+
T Consensus 12 ~~d~~Ll~~I~~ak~ew~~a~~~~~~~~D~~d~~iy~~k~ae~kY~fLlreAk~ 65 (71)
T PF10704_consen 12 EYDEELLEEIEQAKQEWENARRLFENVVDLIDEAIYQLKAAEAKYFFLLREAKK 65 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999987777777788899999998888888755
No 41
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=87.14 E-value=2.9 Score=34.58 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hhhhhccchhhHHHHH-------HHHHHHHHHH----HHHHHHHHHHhcC
Q 016220 61 AIFLKIWSKNAITFHLCRGT-YEYEKKFYNDHLESLQ-------VMEKNYITMA----TEVEKLRAELMNA 119 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a-~EyEKK~~~e~~Eq~q-------~MEKnlisMa----rEvEKLRaElana 119 (393)
-.||+|+|.+-+|+..++.. -|||.|.+. ++-.++ .||.+-..|- .||-+||.||.+.
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~-Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINS-QIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999888764 468888443 333333 3555555555 4788999999764
No 42
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.87 E-value=3.6 Score=38.66 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=33.8
Q ss_pred HHHHHhHHHHH------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 52 HLAFQHCYCAI------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 52 ~~~~~~~~~~~------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+.||.|+|+.- -.+-|..|+.|+-..|.-.+.-+|.-.|...+-+.|-..|-..-.|+++||.+|.+.
T Consensus 8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555443 144444444444444444444444444555555555555555555555555555543
No 43
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=86.30 E-value=1.6 Score=39.51 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
..|++||+.|++|+...-+.=||=|-++ ++..+..+-.|+|||..++...
T Consensus 43 ~~l~~Ei~~l~~E~~~iS~qDeFAkwaK---------l~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAISAQDEFAKWAK---------LNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHTTS-TTTSHHHHHH---------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5589999999999999888878877666 3677777888888888888754
No 44
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=86.28 E-value=3.8 Score=36.46 Aligned_cols=45 Identities=18% Similarity=0.086 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.-|+.|+.|+.+.-.+ ...-.++++.||+|.-...+|++++...+
T Consensus 41 ~~l~lLq~e~~~~e~~-------le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAA-------LERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444333 33456889999999999999988877663
No 45
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=86.27 E-value=2.1 Score=44.26 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
-..||+|++.|+.|+.|+ |-|-+ +....|-++.||-.+-.+..=|.|.|+-.+
T Consensus 41 N~~LKkEN~~Lk~eVerL----E~e~l-~s~V~E~vet~dv~~d~i~Kimnk~Re~vl 93 (420)
T PF07407_consen 41 NHSLKKENNDLKIEVERL----ENEML-RSHVCEDVETNDVIYDKIVKIMNKMRELVL 93 (420)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456888888888888887 44433 233456666666666677777777766544
No 46
>PRK11637 AmiB activator; Provisional
Probab=86.20 E-value=3.8 Score=41.66 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+.+++.+.+||..+...|+--.+.-.+.-++++.+++.|-.+-.||++|+++|..
T Consensus 67 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 67 QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333344455555555555555555555555543
No 47
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.16 E-value=3.5 Score=44.86 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=21.9
Q ss_pred hhHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Q 016220 90 DHLESLQ----VMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 90 e~~Eq~q----~MEKnlisMarEvEKLRaElan 118 (393)
++++++| +=++||+.|+.+.|+.|+.|..
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~ 426 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIE 426 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444444 4478999999999999998764
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.52 E-value=1.7 Score=47.88 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhcC
Q 016220 107 TEVEKLRAELMNA 119 (393)
Q Consensus 107 rEvEKLRaElana 119 (393)
.|+.|||.||...
T Consensus 552 ~E~~~lr~elk~k 564 (697)
T PF09726_consen 552 SELKKLRRELKQK 564 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666543
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.44 E-value=3.9 Score=44.27 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMA----TEVEKLRAELM 117 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMa----rEvEKLRaEla 117 (393)
.-|++|++.|+.||+++|..+|-|--+++++.-+.|.+.+-|--|- .||+.+|.-+.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~ 232 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR 232 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 3489999999999999999999999999999999999999988887 67776665443
No 50
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.40 E-value=2.6 Score=40.87 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.++++|++.|+.|++..-..+|-.++-..++.-|.+..-+=+..+..|-+|||.+|.
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 556777777777777777777777777777777777777777778888888888875
No 51
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=85.36 E-value=5.3 Score=34.76 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|..+++.+.-.+.+...-++--++-..+--...+.+|..+-.|-.+||+|+.+|..+
T Consensus 51 ~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~a 107 (139)
T PF05615_consen 51 LLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEA 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544333222222233456777777777777777777654
No 52
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.85 E-value=0.56 Score=53.10 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=46.6
Q ss_pred hhHHHHHHH---HhHHHHHHHHHHHHHHHHHHhhhhh---hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 47 QYYFLHLAF---QHCYCAIFLKIWSKNAITFHLCRGT---YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 47 ~~~~~~~~~---~~~~~~~l~~Eid~lrqElqr~R~a---~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
++.+|+... +|++|+ .+-|+.|+++++++++. ..|+.|...+.+|.- +.+|-....|||+|.+||++..
T Consensus 918 v~l~l~g~vd~~~e~~kl--~kkl~klqk~~~~l~~r~~~~~~~~k~p~~v~~~~---~~Kl~~~~~ei~~~~~~~~~l~ 992 (995)
T KOG0432|consen 918 VYLPLKGLVDPDSEIQKL--AKKLEKLQKQLDKLQARISSSDYQEKAPLEVKEKN---KEKLKELEAEIENLKAALANLK 992 (995)
T ss_pred EEEEeccCcCcHHHHHHH--HHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Confidence 344444433 777776 23388888888877765 557777776665544 4455667789999999998753
No 53
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.78 E-value=3.7 Score=47.40 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 56 QHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 56 ~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+..++..|..||+.++.+|..++.-+-++-..+.++.|..+..|++|..-.+|++-|..|+..+
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666889999999999999999999999999999999999999888888777777776554
No 54
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.71 E-value=4.9 Score=37.48 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 50 FLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 50 ~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
.++....+|++.+ ++++|+.|+.+|..++..-+-+ ..+.++|+.++.+++.+..+-.|++++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 6777777777777776554433 455667777777777777776666644
No 55
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.40 E-value=3.2 Score=44.07 Aligned_cols=94 Identities=10% Similarity=-0.042 Sum_probs=68.8
Q ss_pred hhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHH---HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 25 FRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCA---IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 25 ~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~---~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
-+++..+--||.|--|.++=..+..+|..+.+.|... ...+.++.|..+|..+-..||-|.+++.........+++.
T Consensus 239 y~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~ 318 (569)
T PRK04778 239 YRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDF 318 (569)
T ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455555566667545444333444444443333333 3488999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016220 102 YITMATEVEKLRAELMN 118 (393)
Q Consensus 102 lisMarEvEKLRaElan 118 (393)
|-.+-.+.+.|..||..
T Consensus 319 l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 319 LEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888888888888864
No 56
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.32 E-value=6 Score=38.32 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016220 96 QVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaE 115 (393)
+.+..-+.-|-.||.+||.|
T Consensus 84 ~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 84 QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444556666677777777
No 57
>PRK11546 zraP zinc resistance protein; Provisional
Probab=84.21 E-value=11 Score=34.44 Aligned_cols=48 Identities=21% Similarity=0.068 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+..+.+.||++|.-.|..+.-+--.+.---+ .+-.+++||..||.+|.
T Consensus 59 f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~-------kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 59 FYAQTSALRQQLVSKRYEYNALLTANPPDSS-------KINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHHHHHHH
Confidence 4557777777777776666554333333323 34444555555554443
No 58
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=84.12 E-value=5 Score=37.48 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH------H-HHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI------T-MATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli------s-MarEvEKLRaElan 118 (393)
+..++..|+++++..-..++--||.+.........-+..+- . -..||||+++.+..
T Consensus 110 ~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k 172 (251)
T cd07653 110 HLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANL 172 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH
Confidence 35555566666666666666666555544433222222221 1 12577777776654
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.11 E-value=4.3 Score=40.24 Aligned_cols=72 Identities=15% Similarity=-0.028 Sum_probs=50.1
Q ss_pred HHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCC
Q 016220 50 FLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI----TMATEVEKLRAELMNAP 120 (393)
Q Consensus 50 ~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli----sMarEvEKLRaElanae 120 (393)
+|+.+-++|.... ++.+|+.|++|+++++..|+-=+....+++++.+..|+-+- -=..||.+|++++...+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4444444444333 57888899999999999998877777788888777775443 23568888888865544
Q ss_pred C
Q 016220 121 N 121 (393)
Q Consensus 121 ~ 121 (393)
+
T Consensus 290 ~ 290 (325)
T PF08317_consen 290 K 290 (325)
T ss_pred H
Confidence 3
No 60
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=83.94 E-value=4.7 Score=33.01 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhh---hhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEY---EKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey---EKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
|-.++..||+=||+||++++- =.+.-.|+.++++.+|+++-.-..=+.||+.
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999864 2233344555555555555444444444443
No 61
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.93 E-value=8.1 Score=34.71 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
+...+..+..|+...+..+....+...+.-+.++.++.++-.|.+|+.+|+
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444555555556666666666665555
No 62
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=83.62 E-value=8.4 Score=33.41 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYE 84 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyE 84 (393)
++.||+.+++||+.....|+-+
T Consensus 48 ~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 48 LQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544443
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.59 E-value=4.6 Score=35.43 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
|+..++.....+...+.-+.+..-..-|+++.|...
T Consensus 88 e~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 88 ELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444333
No 64
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.43 E-value=6.2 Score=42.30 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=39.6
Q ss_pred HHHHHHHHH----HHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHH-------HHHHHHhcCC
Q 016220 63 FLKIWSKNA----ITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE-------KLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lr----qElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvE-------KLRaElanae 120 (393)
|...||+.| ++.-++|...+-+----.+ +...|.||..|-+++.|++ |||.||.+..
T Consensus 312 ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp 379 (521)
T KOG1937|consen 312 LTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLP 379 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 455666544 3455666665555444444 7789999999999999998 7888887643
No 65
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=83.06 E-value=2.9 Score=35.29 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hhhccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYE-YEKKFYNDHL--ESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E-yEKK~~~e~~--Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+..|||.+.+.|.++|--+| .|+|.+-+.+ |+++.|||.+-++-.-+++...||.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELK 60 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 56799999999999999887 4787777665 6888999888777655554444443
No 66
>PLN03188 kinesin-12 family protein; Provisional
Probab=82.95 E-value=2.1 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHhc
Q 016220 97 VMEKNYITMATEV-----------EKLRAELMN 118 (393)
Q Consensus 97 ~MEKnlisMarEv-----------EKLRaElan 118 (393)
.||-+.|+++.|+ ||||.||.+
T Consensus 1058 e~es~wislteelr~eles~r~l~Ekl~~EL~~ 1090 (1320)
T PLN03188 1058 EAESKWISLAEELRTELDASRALAEKQKHELDT 1090 (1320)
T ss_pred HHhhhheechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999887 788888764
No 67
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=82.79 E-value=15 Score=27.38 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 50 FLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 50 ~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.|..+.+.|.... |+..++.|+..+..+....+ =.+.....+..+.+..++-.|...+++|...|.++
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~--G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 77 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQ--GEAADAFQDKFEEWNQAFRQLNEALEELSQALRQA 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBT--SSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544433 67777777777777755444 44555666666777777777777777777776543
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.64 E-value=4 Score=45.11 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
||.||+.||+|...+..-|--=.+.+-.-.+.++.|||+|..-.+--..|.++|.+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555554443333334444566778888876655544444445544
No 69
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.60 E-value=2.4 Score=42.26 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhh-------hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEY-------EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey-------EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|.+||+.|.+|..++...++- =++.-.+..++.-.++..++.+..|.+.|.+.+..+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444443322 111222444555666777888888888888876554
No 70
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=82.50 E-value=5.4 Score=38.32 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhH-H-HHHHHHHH-HHHHHHHHHHHHHHHhcCCC
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHL-E-SLQVMEKN-YITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~-E-q~q~MEKn-lisMarEvEKLRaElanae~ 121 (393)
.+..|+++||.|.|.+.+.|--||.||.+.-.+. | |.-..+.. |-.|-.|...+..+|-|.+.
T Consensus 83 ~~~~l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~ 148 (209)
T COG5124 83 SSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQK 148 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3455899999999999999999999994433222 2 22222222 22344444444446655543
No 71
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.20 E-value=0.97 Score=46.52 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=42.9
Q ss_pred cCCCchhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 016220 42 ESSSPQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 42 e~~~~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarE 108 (393)
||...++..|++--+||++-+ |++|++.|.||++.+-+.||.=|+...|.+|-++..|-+=|.||+|
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~ 296 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIE 296 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhh
Confidence 333345555666666665443 6777777777777777777777777666666666655555555554
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.04 E-value=4.2 Score=43.36 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=71.7
Q ss_pred hhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHH---HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 25 FRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAI---FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 25 ~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~---l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
.+++..+--|+.|--|.++-..+.-+|+.+.+.|+..- ....++.|..+|..+-..+|-|.+++..--+..+.+.+-
T Consensus 235 y~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~ 314 (560)
T PF06160_consen 235 YREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEY 314 (560)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555666677787666664445555555555554443 488999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016220 102 YITMATEVEKLRAELMN 118 (393)
Q Consensus 102 lisMarEvEKLRaElan 118 (393)
|-.+.+....|..||..
T Consensus 315 l~~~~~~~~~l~~e~~~ 331 (560)
T PF06160_consen 315 LEHAKEQNKELKEELER 331 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888888753
No 73
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.95 E-value=7.3 Score=42.55 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~----q~MEKnlisMarEvEKLRaElana 119 (393)
..||+.|++|...++.-||.- +..++.+|+| +.++++|.-|-.|+++|+.++=+.
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 567788888888888888775 6667777765 567888888888888888776554
No 74
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.74 E-value=4.3 Score=40.72 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
..|++.+|.+|...-..++--++.-.++-+|++..+..+-....++.+|+.||+.+++
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667766766666777777777788889999999999999999999999998876
No 75
>PRK10780 periplasmic chaperone; Provisional
Probab=81.65 E-value=10 Score=34.12 Aligned_cols=19 Identities=0% Similarity=-0.190 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
++.||+.+++||+.....|
T Consensus 55 ~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 55 RASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555544
No 76
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.58 E-value=1.7 Score=41.58 Aligned_cols=55 Identities=16% Similarity=-0.039 Sum_probs=40.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI 103 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli 103 (393)
+.-.|..+++| ++.|..|+++|+.|+..+|.-+|-|++.+.+.-.++..+.|.+-
T Consensus 59 lr~~id~~~~e--ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 59 LRRQIDDLSKE--KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHH--hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44455556666 67789999999999999999999997777666666666555543
No 77
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=81.51 E-value=12 Score=30.50 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
|-.++.-|+.+|++.-. .-.+..+..+..+|..|+.-++.+..+-+|...+.+-+-.|...||+|
T Consensus 4 LE~qLl~ale~Lq~~y~-~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYE-KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566778888876544 446677888889999999999999999999999999999999999988
No 78
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.49 E-value=6.6 Score=41.61 Aligned_cols=73 Identities=21% Similarity=0.028 Sum_probs=54.2
Q ss_pred hhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 47 QYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+...|..+++||..+- .+.|+..|+..+..+|.-++-+|..-..+-+..+..+-.+.++--|+.++|.||..+
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 3344666667766544 367777788888888888888888877777777777778888888888888888653
No 79
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.80 E-value=2.9 Score=40.16 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh---hccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYE---KKFYNDHL------ESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyE---KK~~~e~~------Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|+..|..|..|++.+|.++..= +.-.+.+. .+.+.=+..+.++-+|||.||+||..
T Consensus 85 Lrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Confidence 4555555556666666655542 11111111 11222245688899999999999974
No 80
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.65 E-value=0.51 Score=51.11 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
|..+|+.|..|+..+...++-.++....+-+....+|+-.+-+.+|++-||+.|.+.++-
T Consensus 369 l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 369 LEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 566667777777777666666666555555677789999999999999999999987654
No 81
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=80.55 E-value=7.7 Score=34.04 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
.+.+++.+++|+.....+|+-.++.--++-+--..-.|.|-..-.|+++||+.|++-.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~R 64 (125)
T PF03245_consen 5 YKRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKR 64 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCce
Confidence 356667777777777777776666554444444556778888899999999999976544
No 82
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.11 E-value=5.2 Score=46.29 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|.-||-.++.-|.++|..+| -| .|+++.|+.-|.-|-.|++|||-|+.+.
T Consensus 175 L~velAdle~kir~LrqElE--EK-----~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELE--EK-----FENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444332 22 3788888888888899999999887654
No 83
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.08 E-value=5.4 Score=39.44 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhhhhh-hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTY-EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~-EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|+.|+..+|+++..+-+.+ +|||+.+... +..++|++ .|-+|+||||-.+.-.
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~-~~~~t~~~---~ie~~l~~l~~~aG~v 108 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVR-RSVLTDDA---ALEDRLEKLRMLAGSV 108 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhHHH---HHHHHHHHHHHHhccC
Confidence 4555666666555555544 4677766665 33333333 2344999999988754
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.99 E-value=5.7 Score=42.11 Aligned_cols=37 Identities=5% Similarity=-0.268 Sum_probs=25.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~Ey 83 (393)
-++.-|.+.+|+--.-|++|...|+.|..+++++.++
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~ 80 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEERVREEATEKT 80 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556655555788888888888888877765
No 85
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.74 E-value=9 Score=37.37 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFY-NDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~-~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+++|+.+++++..++..++-.+... .+..+++..++.+|..+-.+++.++.+|.+.
T Consensus 216 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 216 EAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444455555555544444333222 2233445566666666666666666666554
No 86
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=79.73 E-value=5.8 Score=35.14 Aligned_cols=42 Identities=12% Similarity=-0.060 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhhh--hhhhhccchhhHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGT--YEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a--~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
+.|+.|||.+++++.+++.. .+.-.....++.++++++||.+
T Consensus 70 LALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 70 LALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999998888866 6666666777778888888877
No 87
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=79.70 E-value=2.7 Score=39.90 Aligned_cols=101 Identities=16% Similarity=-0.036 Sum_probs=69.5
Q ss_pred eeeeeeeeeccch-----hhhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 016220 11 IRCTLIFTCTLDF-----LFRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 11 ~~~~~~~~~~~d~-----~~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEK 85 (393)
++|++++|++=|- ..++-|.|.--++- .+-.= .++.++|..|..+|+-..+++.|..+|++|--+=+-+--.+
T Consensus 2 ~~~~~iyTrtGD~G~T~l~~g~rV~Kd~~rVe-ayGtl-DElNs~IG~A~~~~~~~~i~~~L~~IQ~~LF~lG~dLat~~ 79 (184)
T COG2096 2 VPLMKIYTRTGDKGTTGLFGGGRVSKDSPRVE-AYGTL-DELNSFIGLARALLKDEDIRAILRRIQNDLFDLGADLATPE 79 (184)
T ss_pred cceeeeEeecCCCCccccCCCceecCCCceee-eeccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhcCCC
Confidence 5799999999886 34445555422221 22222 35889999999999988899999999999887766554443
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 86 -KFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 86 -K~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
|...-.-|+..-||+-+.....|+++|+
T Consensus 80 ~~~~~i~~e~v~~LE~~id~y~~~l~~l~ 108 (184)
T COG2096 80 EKPLRITEEDVKRLEKRIDAYNAELPPLK 108 (184)
T ss_pred ccccccCHHHHHHHHHHHHHHHhcCCCcc
Confidence 3333344677778887777777777765
No 88
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.26 E-value=15 Score=34.25 Aligned_cols=29 Identities=7% Similarity=-0.118 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDH 91 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~ 91 (393)
|+.|++.|+.+++.++.-+|.-+|.+.+.
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666554443
No 89
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=79.25 E-value=4.3 Score=38.17 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
.++||.+|+|||.-.-+.=+|-|-+ -+|+++..|.+|+|+-
T Consensus 49 ~~~ei~dmKqelnavs~qD~fAkwa---------RlnRKi~kl~~ele~q 89 (175)
T KOG4253|consen 49 KVAEIQDMKQELNAVSMQDNFAKWA---------RLNRKINKLDKELETQ 89 (175)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 5799999999998766655554443 4567777888888653
No 90
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=79.09 E-value=6.5 Score=37.06 Aligned_cols=52 Identities=8% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+++++.+++++...+..+..-++.-.+-.++.+.+|+.|..|-.||+++++|
T Consensus 124 ~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 124 KEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444555555555433333333344455555555555555555443
No 91
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=78.74 E-value=3.2 Score=36.40 Aligned_cols=51 Identities=6% Similarity=-0.005 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+..|++||+.|+.|+||.-..+ +...+.+++.+. |++=+.-+-|.++|+-|
T Consensus 37 e~~lkEEi~eLK~ElqRKe~Ll----~Kh~~kI~~w~~----lL~d~~~~~k~~~evp~ 87 (106)
T PF11594_consen 37 EQVLKEEINELKEELQRKEQLL----QKHYEKIDYWEK----LLSDAQNQHKVPDEVPP 87 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHhhccCchhccc
Confidence 5678999999999998876666 222233333322 25555555666666553
No 92
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=78.51 E-value=6.8 Score=37.40 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhhhh----hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYE----YEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~E----yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
..+|..++.|+..-|..++ -..|.-..++.++..+-||+..+++|.|+++.-+
T Consensus 90 ~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~ 146 (239)
T cd07658 90 IKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQV 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444443 3334555667777789999999999999988654
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.34 E-value=12 Score=37.50 Aligned_cols=72 Identities=10% Similarity=-0.122 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhHHHH-----HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 47 QYYFLHLAFQHCYCA-----IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~-----~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+..+.+...+||+++ .|.+||..|+.|+..+....+-.-+.+.++.-++..+++-+.++-..++.++.+|..
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555443 367777777777766654444333333333333334444444444444444444443
No 94
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.28 E-value=5.4 Score=42.38 Aligned_cols=45 Identities=9% Similarity=-0.071 Sum_probs=30.2
Q ss_pred cccccCCCchhHHHHHHHHhHHHHHH-----------------------HHHHHHHHHHHHhhhhhhh
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAIF-----------------------LKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~l-----------------------~~Eid~lrqElqr~R~a~E 82 (393)
+|..|-+.-|.-+|+.-.++|.|.-| ..-.+.|++|+|.+|+.+|
T Consensus 241 ~l~Edq~~~LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle 308 (593)
T KOG4807|consen 241 PLTEDQQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLE 308 (593)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHH
Confidence 35555566677888888888888764 2235667777777776655
No 95
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=78.16 E-value=16 Score=32.31 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
+..|..|+++|+-+|..+ .-++.....|-+.-+.-|.||.+-.+||+|+.
T Consensus 85 q~~i~~lK~~L~~ak~~L-~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~ 134 (142)
T PF04048_consen 85 QERIRELKESLQEAKSLL-GCRREELKELWQRSQEYKEMIEILDQIEELRQ 134 (142)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999 44666677777777888999999999999986
No 96
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=78.13 E-value=15 Score=34.42 Aligned_cols=80 Identities=8% Similarity=-0.018 Sum_probs=43.3
Q ss_pred ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFY---NDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~---~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
|++=...++..++.....+ -..++++|+.++.+++|.+.-++-..... .+...+++.++.+|-.+..+++.|+.+
T Consensus 54 L~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 131 (322)
T TIGR01730 54 LARLDDDDYQLALQAALAQ--LAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLN 131 (322)
T ss_pred EEEECCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333455544444333 23356667777777777665543211111 112234556667777778888888888
Q ss_pred HhcCC
Q 016220 116 LMNAP 120 (393)
Q Consensus 116 lanae 120 (393)
+.+..
T Consensus 132 ~~~~~ 136 (322)
T TIGR01730 132 LRYTE 136 (322)
T ss_pred hccCE
Confidence 77653
No 97
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=78.05 E-value=2.4 Score=44.56 Aligned_cols=50 Identities=10% Similarity=-0.083 Sum_probs=39.1
Q ss_pred HHHHHHHHhHHHH----------HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHH
Q 016220 49 YFLHLAFQHCYCA----------IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVM 98 (393)
Q Consensus 49 ~~~~~~~~~~~~~----------~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~M 98 (393)
.-|.+|+++||-. -|..-++.|+.||||-|..||.||..-.|.-||.|-+
T Consensus 415 ~rIn~aL~~kkp~d~~eY~k~~~~~~e~l~Elq~E~k~~~~~~EE~k~~A~E~~q~~Q~l 474 (507)
T COG5118 415 ERINEALNEKKPFDQVEYNKLRSYLLEKLIELQNEHKHHMKEIEEAKNTAKEEDQTAQRL 474 (507)
T ss_pred HHHHHHHhccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3466777765421 1577899999999999999999999988888887754
No 98
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=77.40 E-value=17 Score=32.91 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=42.3
Q ss_pred ccccCCCchhHHH--HH---HHHhHHHHH---------HHHHHHHHHHHHHhhhhhhhhhhccch--------hhHHHHH
Q 016220 39 WICESSSPQYYFL--HL---AFQHCYCAI---------FLKIWSKNAITFHLCRGTYEYEKKFYN--------DHLESLQ 96 (393)
Q Consensus 39 l~~e~~~~~~~~~--~~---~~~~~~~~~---------l~~Eid~lrqElqr~R~a~EyEKK~~~--------e~~Eq~q 96 (393)
.+|-|+ .|.++| +. ..++|+|.. |+.+++.|..||+.+|..|=-=+=... +..||=+
T Consensus 28 v~~~R~-dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK 106 (126)
T PF07028_consen 28 VTCYRS-DLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPK 106 (126)
T ss_pred hhhhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcH
Confidence 455665 377666 12 333333332 466777777777777776644443333 3445667
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 97 VMEKNYITMATEVEKL 112 (393)
Q Consensus 97 ~MEKnlisMarEvEKL 112 (393)
-+||--..+..|+.|.
T Consensus 107 ~IEkQte~LteEL~kk 122 (126)
T PF07028_consen 107 FIEKQTEALTEELTKK 122 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7787777777766654
No 99
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=77.24 E-value=6.8 Score=42.74 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
|+-+-.-+.|..-.=-|-|.|- |..+ ++.|-||-|.++-|--+|.|||-++|.+
T Consensus 667 KEKwv~KKe~t~le~qAaEves--NlaL---idqi~kaaIdltvEkprlqAeLdd~ea~ 720 (790)
T PF07794_consen 667 KEKWVAKKEYTVLEGQAAEVES--NLAL---IDQITKAAIDLTVEKPRLQAELDDLEAR 720 (790)
T ss_pred HHHHhhhhhHHHHHHHHHHHHh--hHHH---HHHHHHHHHHHHHhhhHHHhhchHHHhh
Confidence 4444333444444444444443 3333 4457788888887888899999887765
No 100
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=77.21 E-value=4.9 Score=45.09 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=46.1
Q ss_pred hhccccccccCCCchhHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHH------H
Q 016220 33 LHFGHPWICESSSPQYYFLHLAFQHC-YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYIT------M 105 (393)
Q Consensus 33 ~h~~h~l~~e~~~~~~~~~~~~~~~~-~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlis------M 105 (393)
-|.||+.+.|+-.+|-.+|..-++|. --..|++-+|-|+.|. ++.+. -|.|.+++.| -|.+-|.++. |
T Consensus 502 ~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~--s~g~~~a~~L--k~ei~kki~e~~~~~~~ 576 (762)
T PLN03229 502 DQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKAL--SEKKSKAEKL--KAEINKKFKEVMDRPEI 576 (762)
T ss_pred cccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhh--cccchhhhhh--hHHHHHHHHHhcccHHH
Confidence 46678877775333333333333320 0123677777777666 33333 2333334333 3567788888 8
Q ss_pred HHHHHHHHHHHhc
Q 016220 106 ATEVEKLRAELMN 118 (393)
Q Consensus 106 arEvEKLRaElan 118 (393)
-.|||.|+||+.+
T Consensus 577 kek~ea~~aev~~ 589 (762)
T PLN03229 577 KEKMEALKAEVAS 589 (762)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888876
No 101
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=77.20 E-value=11 Score=34.73 Aligned_cols=75 Identities=7% Similarity=-0.007 Sum_probs=40.9
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH--------HH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI--------TM 105 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli--------sM 105 (393)
++.+|+......|+.|-+....+. .+++|...|+|.++.|.. -=++...|...+++++|.+|+ .|
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e--~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~ 115 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE--KIDSLESEFLIKKKNLEQDLKNSINQNIEDI 115 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788898777777777766533322 244444445444444321 123455566666666665554 34
Q ss_pred HHHHHHHHHH
Q 016220 106 ATEVEKLRAE 115 (393)
Q Consensus 106 arEvEKLRaE 115 (393)
-..+++||.+
T Consensus 116 ~~~~~~~~~~ 125 (155)
T PRK06569 116 NLAAKQFRTN 125 (155)
T ss_pred HHHHHHHHHh
Confidence 4445555544
No 102
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.01 E-value=13 Score=33.89 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+.-|-...|++-+-.|-.|||+++.++.
T Consensus 128 ki~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 128 KIQELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677788889999999999876
No 103
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.93 E-value=8.2 Score=44.92 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhh---hhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLC---RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~---R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
|..+++.++.+|+++ -..+.-+|-...+.+++++.+|..|..+..|+++|++++...+
T Consensus 848 l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~ 908 (1311)
T TIGR00606 848 NRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAK 908 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777 4445555555566788888999999999999999999887654
No 104
>PRK11637 AmiB activator; Provisional
Probab=76.91 E-value=14 Score=37.57 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=13.5
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 016220 77 CRGTYEYEKKFYNDHLESLQVMEKNYITMAT 107 (393)
Q Consensus 77 ~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar 107 (393)
....++-+++.....+++++.-|+.|-.+-.
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 105
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.88 E-value=17 Score=33.21 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=25.2
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 84 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 84 EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+++.+...-|+.+.+++.|-..-.|+|.|+.+..+.+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667777777777777777777777766543
No 106
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.80 E-value=9.4 Score=40.47 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 016220 100 KNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 100 KnlisMarEvEKLRaElana 119 (393)
..|.++.+||+|||-|++.+
T Consensus 130 ~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 130 AELDSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45888889999999998764
No 107
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=76.77 E-value=13 Score=39.19 Aligned_cols=64 Identities=11% Similarity=-0.101 Sum_probs=40.8
Q ss_pred hhhhccccccccCCCchhHHHHHHHHhHHHHH-------------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH
Q 016220 31 KALHFGHPWICESSSPQYYFLHLAFQHCYCAI-------------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL 95 (393)
Q Consensus 31 k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~-------------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~ 95 (393)
|++-|+..|...+..--.+.|...+..|+... |++||+.|++||.++++. +.+.=...+..|..
T Consensus 104 ~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG-~~~~ld~~~~~er~ 180 (478)
T PF11855_consen 104 KALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAG-DVPVLDDTQARERA 180 (478)
T ss_pred HHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHH
Confidence 44555555544443333445556666665554 799999999999999998 66655544444443
No 108
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=76.70 E-value=23 Score=28.51 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHH-----HHHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESL-----QVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~-----q~MEKnlisMarEvEKLRa 114 (393)
....+.++.++.+++..++-+|+.-.+.++.. +.|+.++..|-.++++|+.
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777776655555432 3344444444444444443
No 109
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=76.45 E-value=1.9 Score=44.52 Aligned_cols=14 Identities=57% Similarity=0.677 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCC
Q 016220 108 EVEKLRAELMNAPN 121 (393)
Q Consensus 108 EvEKLRaElanae~ 121 (393)
|-||+|||+.-+++
T Consensus 140 E~e~t~aE~~Has~ 153 (426)
T KOG2008|consen 140 EQEKTRAELVHAST 153 (426)
T ss_pred HHHHHHHHHHHHHH
Confidence 44577777766554
No 110
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=76.40 E-value=10 Score=43.69 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=42.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhh---hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 54 AFQHCYCAIFLKIWSKNAITFHLCRGTY---EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 54 ~~~~~~~~~l~~Eid~lrqElqr~R~a~---EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..+|+++ |.+||+.|++|++++..-+ ++.+|.+.+.+|+-+.-...+.....|+|+..+.|..
T Consensus 840 ~~~e~~r--Lekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 840 LAAETAR--VDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHHHhh--HHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455443 7888888888888887665 5667888888887766555555555555555555554
No 111
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.31 E-value=4.2 Score=44.59 Aligned_cols=28 Identities=11% Similarity=-0.107 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYND 90 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e 90 (393)
++.|+.-+-.|++++-++||-=||....
T Consensus 660 Fk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 660 FKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3666666777777777777765544433
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.25 E-value=9.4 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElana 119 (393)
+.||-.+.-+.+|+.+||.+|.-+
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 467777788888888888887643
No 113
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=76.02 E-value=12 Score=30.43 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
+-++.++-.||||+.-.-++|.-=-.+.-+.| |.|-|.|+-+.+.-||-||.-.|
T Consensus 7 aeirl~~arLrqeH~D~DaaInAmi~~~cD~L-~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 7 AEIRLTLARLRQEHADFDAAINAMIATGCDAL-RIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHH-HHHHHHHHHHhHHHHHHHHHHhh
Confidence 34677888899999888777754333555544 78999999999999999998765
No 114
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=75.88 E-value=4.7 Score=39.58 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 69 KNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 69 ~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.+-+++...|.+||-.-|.--..+.|.+..+.+...+..|||||+.-+..
T Consensus 130 k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k 179 (258)
T cd07680 130 KKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDK 179 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHH
Confidence 33345666777666544433334444444444555556777777665543
No 115
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=75.84 E-value=6 Score=39.50 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+.+..+|+.||..|..|++.+|..+.--+..+.++.+..+ |+.+.-..-.|.++|+.||.++.
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e-~~~r~~~lr~~~~~l~~el~~aK 229 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKILHEE-LEARESGLRNESKWLEHELSDAK 229 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHH
Confidence 5667788999999999999999864333222222222222 22222112336667777766543
No 116
>COG1422 Predicted membrane protein [Function unknown]
Probab=75.69 E-value=12 Score=36.19 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=24.7
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 85 KKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 85 KK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
|+.+.+.+|++|.+++.+...-+|+=|+.-
T Consensus 93 ~~~d~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 93 ESGDMKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788899999999988888888888654
No 117
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.58 E-value=11 Score=40.94 Aligned_cols=18 Identities=0% Similarity=-0.145 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a 80 (393)
|+.+|+.|+.||.+.+..
T Consensus 169 l~~~v~~l~~eL~~~~ee 186 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEE 186 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 118
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=75.44 E-value=5.4 Score=31.70 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhhhh
Q 016220 66 IWSKNAITFHLCRGTY 81 (393)
Q Consensus 66 Eid~lrqElqr~R~a~ 81 (393)
+++.+++|++.+|..+
T Consensus 60 ~~~~~r~~~~~~r~~l 75 (125)
T PF13801_consen 60 EMRALRQELRAARQEL 75 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 119
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.40 E-value=19 Score=34.25 Aligned_cols=30 Identities=0% Similarity=-0.183 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHL 92 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~ 92 (393)
|++|++.|+....++...++-.++.-.++-
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444444444444444333
No 120
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=75.39 E-value=11 Score=39.41 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=26.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 87 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 87 ~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
...+..++++..|+-+-.+.+||++|+.||.....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455566677888888888899999999876654
No 121
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.33 E-value=10 Score=40.66 Aligned_cols=48 Identities=6% Similarity=-0.000 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 55 FQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 55 ~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.++.|-.-|.++|+.||+|++- .--+++.+|..|-.|-.|++.|+++|
T Consensus 73 eqQ~kasELEKqLaaLrqElq~--------------~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDV--------------LNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444566777777666651 11234445666667778888888887
No 122
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=75.11 E-value=4.9 Score=36.20 Aligned_cols=60 Identities=12% Similarity=-0.042 Sum_probs=40.4
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--hhhHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFY--NDHLESLQVMEKNYITM 105 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~--~e~~Eq~q~MEKnlisM 105 (393)
+|...|-++..+++..-++++|+.++++|..+.+.+--.++.. .-.-|+.+.||+-+..+
T Consensus 34 El~a~igla~~~~~~~~~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~ 95 (163)
T PF01923_consen 34 ELNAFIGLARSEIKEEELREILERIQNELFDLGAELATPEEDEEPEITEEDVQELEEEIDEY 95 (163)
T ss_dssp HHHHHHHHHHTHCTTHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHHHHHH
Confidence 4667777777777767789999999999999998887765322 22244555555544333
No 123
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.11 E-value=17 Score=31.83 Aligned_cols=82 Identities=7% Similarity=-0.030 Sum_probs=45.0
Q ss_pred hhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 33 LHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 33 ~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+.++|-||..|+......=.+..+ ...|..|++.|...++++...++-=+.......+..+.+++.+-+.-.-+..+
T Consensus 37 in~i~~Ll~~~~r~~~~~e~l~~~---~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 37 INCIYDLLQQRDRDMEQREDLSDK---LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777664322221111111 23367777777777777777666555555555566666666655554444444
Q ss_pred HHHHh
Q 016220 113 RAELM 117 (393)
Q Consensus 113 RaEla 117 (393)
+.|+.
T Consensus 114 kee~~ 118 (151)
T PF11559_consen 114 KEELQ 118 (151)
T ss_pred HHHHH
Confidence 44443
No 124
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=75.03 E-value=4.2 Score=32.86 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMA 106 (393)
Q Consensus 93 Eq~q~MEKnlisMa 106 (393)
+|.+.||+.+-.+.
T Consensus 79 ~q~~~l~~~l~~l~ 92 (127)
T smart00502 79 QQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 125
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=74.91 E-value=19 Score=35.58 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
.++-|..||++++++...|++=.+.-.++-+|++.|.++.
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5999999999999999999988888889999999996643
No 126
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=74.90 E-value=10 Score=43.17 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhhhhh---hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTY---EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~---EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|.+||+.|++|+++++.-+ +|.+|+..+.+|+.+.- |..+-.|+++|...|++.
T Consensus 934 L~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~k---l~~~~~~l~~l~~~l~~l 990 (995)
T PTZ00419 934 LEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEK---IDELNEEIKQLEQAIEEL 990 (995)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777 45557777777776544 444555777777766653
No 127
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=74.85 E-value=27 Score=27.69 Aligned_cols=34 Identities=6% Similarity=-0.083 Sum_probs=20.2
Q ss_pred hhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhh
Q 016220 47 QYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a 80 (393)
|.-+|+..+++.++.+ ++.+|..+++||..+=.+
T Consensus 46 Q~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~ 81 (125)
T PF13801_consen 46 QQAKLRALMDEFRQEMRALRQELRAARQELRALLAA 81 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555555544433 677777777777665544
No 128
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.80 E-value=20 Score=34.43 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhH----HHHHHHHHHHHHH-------HHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHL----ESLQVMEKNYITM-------ATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~----Eq~q~MEKnlisM-------arEvEKLRaElan 118 (393)
.+.+...+.=|+-.|..||-=+|+-.+++ ..++.||++|.+| .-|||||+++|.+
T Consensus 119 lE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~~~~~e~ekl~~~i~~ 184 (246)
T cd07597 119 LEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPDVKGAEVDKLEASIIK 184 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Confidence 34444455556778889996665544444 4457899999999 5699999999864
No 129
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.64 E-value=9.4 Score=42.39 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016220 96 QVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaEla 117 (393)
+.|-|.|..|..+++.|++-|.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 130
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=74.62 E-value=7.7 Score=36.37 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhc
Q 016220 106 ATEVEKLRAELMN 118 (393)
Q Consensus 106 arEvEKLRaElan 118 (393)
.+|+||+++.|.+
T Consensus 149 ~ke~eK~~~k~~k 161 (236)
T cd07651 149 GKELEKNNAKLNK 161 (236)
T ss_pred cchHHHHHHHHHH
Confidence 3455555555443
No 131
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=74.47 E-value=18 Score=38.16 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=48.4
Q ss_pred hhhHHhhhhhhccc--cccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 24 LFRQVYSKALHFGH--PWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 24 ~~~~~~~k~~h~~h--~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
++++|+.--.+..- .+|.| +|..||+.-.++..+.....+|+.++.|++.. ++++++....+..
T Consensus 305 i~~Di~~~k~~~gWrT~~Ii~---ELe~Ei~~~~~~~~~~~~l~~L~~~~~~~~~~-----------~~~~~~~~~~~~~ 370 (448)
T PF05761_consen 305 IYGDILKSKKRHGWRTAAIIP---ELEQEIEIWNSKKYRFEELQELEELLEELQDH-----------LDQLRSSSELRPD 370 (448)
T ss_dssp TTTTHHHHHHHH-SEEEEE-T---THHHHHHHHHHTHHHHHHHHHHHHHCHHHHCH-----------HHHHHHHHHHHHH
T ss_pred hhhhhhhhccccceEEEEEeh---hhhhhhhhhhhcchhhhHHHHHHHHHHHHHHH-----------hcccccchhhHHH
Confidence 56666543333332 26654 36666666555543333333444444433322 3334477777778
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcc
Q 016220 102 YITMATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 102 lisMarEvEKLRaElanae~~~~ 124 (393)
+-.+-+|+.+||.++.+.=|.-|
T Consensus 371 ~~~~~~~~~~~~~~~~~~fn~~~ 393 (448)
T PF05761_consen 371 ISELRKERRELRREMKELFNPQF 393 (448)
T ss_dssp HHHHHHHHHHHHHHHHCTT-TTT
T ss_pred HHHHHHHHHHHHHHHhhhcccch
Confidence 88899999999999987555444
No 132
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.37 E-value=11 Score=41.13 Aligned_cols=40 Identities=13% Similarity=-0.125 Sum_probs=30.0
Q ss_pred chhHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHhhhhhhhhhh
Q 016220 46 PQYYFLHLAFQHCYCAI-----------FLKIWSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-----------l~~Eid~lrqElqr~R~a~EyEK 85 (393)
+-..+|.+++.+|+.-+ |.++|+.|++|+.++-..+.-|-
T Consensus 430 ~~~~km~~~i~~~~~~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~~~l 480 (588)
T KOG3612|consen 430 VVEDKMKDAIIDLQESTLSDYSGSRERSLVAATEKLRQEFEELQQTSRREL 480 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567888888888776 48899999999887766555544
No 133
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.10 E-value=31 Score=27.89 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 52 HLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 52 ~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
.++-|+-+-+-|+.|-+.|..--...+.+|- |++ .+.+.+|+.+..+...++++..+|.+.+.
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IK---KLr----~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIK---KLR----AKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665566788888888877777777773 333 34555666667777777777777665543
No 134
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.06 E-value=9.5 Score=37.05 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
-|...||.|++|+.++|..||. +-.|++.|.+.--.+=.+|+++..+|
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~-------~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQE-------NQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999984 44445555555555556666654443
No 135
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.80 E-value=17 Score=36.90 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.-|..|..|+-+.|--+.--++ |+-+++-.++.+|+.+.|-+|||+.||.+
T Consensus 136 ~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~ 186 (300)
T KOG2629|consen 136 KSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINT 186 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455555555555555554454 88899999999999999999999999865
No 136
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.78 E-value=17 Score=39.11 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++.+++.++++++.++..|.-+- -+..++++.+|+.+-.+-.|+++++.+|.+.
T Consensus 235 l~~ele~a~~~l~~l~~~~~~~G---G~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 235 LRNELEEAQRSLESLEKKFRSEG---GDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555543 3566777788888888888888777777653
No 137
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=73.67 E-value=15 Score=30.14 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh--------hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTY--------EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~--------EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|+.+|..-.+| |.-|...+..+++||+++|..- .|||..+.|.+=-.|| |-|| |||+|
T Consensus 1 L~kdv~~l~~E--keeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QA-----------VNKL-AEIMN 66 (69)
T PF08912_consen 1 LTKDVANLAKE--KEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQA-----------VNKL-AEIMN 66 (69)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHH-----------HHHH-HHHHC
T ss_pred CchHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-HHHHc
Confidence 34556666666 5566666667777777777655 4666655555443333 4555 77877
Q ss_pred C
Q 016220 119 A 119 (393)
Q Consensus 119 a 119 (393)
.
T Consensus 67 R 67 (69)
T PF08912_consen 67 R 67 (69)
T ss_dssp T
T ss_pred c
Confidence 4
No 138
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=73.47 E-value=12 Score=36.42 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhhhhh------------hhhcc------chh----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYE------------YEKKF------YND----HLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~E------------yEKK~------~~e----~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..||+.|+.||.|.=+-|+ -||.. ..+ +.|-.+.||.++=-|.+-|+||+.+|..
T Consensus 128 ~~ELeSlkeEL~HfE~rl~K~~H~~~el~~~~~k~~~ve~~g~~~~~~~~~e~~~~leek~Kk~~~KV~Kl~~dLe~ 204 (214)
T PF06401_consen 128 EDELESLKEELKHFEKRLEKHRHYQEELELSHEKLKHVESLGDEEHFDRKSEKYKTLEEKIKKLGRKVKKLHQDLES 204 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999987544332 34432 211 4456779999999999999999999975
No 139
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.47 E-value=18 Score=37.45 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFY---NDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~---~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
...|+.|||.||.|...+-..|---||.. .+++++.+.+.+.|..+..++++|.++|.
T Consensus 37 ~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 37 RRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888777777775422222 24777778888888887777777766654
No 140
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=73.38 E-value=8.8 Score=42.92 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh---hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 61 AIFLKIWSKNAITFHLCRGTYE---YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~E---yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.-|.+||+.|++||++++.-+. |++|+-.+.+|+.+. .|...-.|+++|+..|++.
T Consensus 814 ~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~---kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 814 ARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKERE---KLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 3478888888888888877764 455777777766654 3445666888888887753
No 141
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=73.35 E-value=6.1 Score=42.39 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-.||+||+.|+.+|+..-...+..+. -++-+.+...|..|=+|+|||..||-+
T Consensus 369 k~lKeeI~~lk~~l~~~~~~~~~~~~-----~~~~~~~~e~i~~kE~eLe~L~~elDd 421 (492)
T PF06273_consen 369 KFLKEEINALKERLEEEEASSEKSKG-----SGEEESLREEISQKEKELEKLTRELDD 421 (492)
T ss_pred hhhhhhHHHHHHHHHhhhhhhhhccc-----cccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 45888888888888766443322211 011144444455555667777777765
No 142
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.66 E-value=17 Score=40.73 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHhcC
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT-------EVEKLRAELMNA 119 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar-------EvEKLRaElana 119 (393)
.|+.||+.|+.++..+...++-||. ......|.|++.+....+ .|..|.+||..+
T Consensus 370 ~Lk~ELk~Lk~k~~~~~~~~~~ek~---~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l 431 (717)
T PF09730_consen 370 QLKAELKALKSKYNELEERYKQEKD---RLESEVQNLKEKLMSLEKSSREDQERISELEKELRAL 431 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3577777777777766666655553 233445556555555555 555555555544
No 143
>PF12848 ABC_tran_2: ABC transporter
Probab=72.52 E-value=15 Score=28.91 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
..+..+.+..+.|+.++...|+--+. .+....+.+.++|-|--| .+||+.
T Consensus 27 ~~~~~~~~~~~k~~~~l~~~i~r~~~-~a~~~~~a~sr~k~lekl-e~~e~~ 76 (85)
T PF12848_consen 27 ERQERQYEKQQKEIKRLEEFIRRFRA-KAKKAKQAKSREKRLEKL-ERIEKP 76 (85)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-Hhhccc
Confidence 44445555555555555555554333 235556777777777777 446655
No 144
>PF15456 Uds1: Up-regulated During Septation
Probab=72.41 E-value=22 Score=31.63 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHh-------hhhhhhhhhcc
Q 016220 64 LKIWSKNAITFHL-------CRGTYEYEKKF 87 (393)
Q Consensus 64 ~~Eid~lrqElqr-------~R~a~EyEKK~ 87 (393)
.+|+|.|++|++. +|..+..|+|.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~ 51 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLALESKI 51 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666554 45556667665
No 145
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=72.30 E-value=42 Score=27.77 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKF---YNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~---~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.-.|+.++|.||+|.-.+-..|---|+. ..+++++.+.+-+.+-.+-.+++.+..+|.
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888777777766663 567778888888888888777777777764
No 146
>PLN02943 aminoacyl-tRNA ligase
Probab=72.18 E-value=12 Score=42.72 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh---hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYE---YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~E---yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.-|.+||+.|++||++++.-+. |..|+..|.+|+.+.--+ .+-.|+++|+..|++
T Consensus 892 ~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~---~~~~~l~~~~~~l~~ 949 (958)
T PLN02943 892 ERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAA---EAEEKIKLTKNRLAF 949 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3378888888888888887764 555777777777665444 444555555555554
No 147
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=72.15 E-value=2.4 Score=45.95 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=42.4
Q ss_pred hhhcc-ccccc-cCCCchhHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhhhhhhhhhcc
Q 016220 32 ALHFG-HPWIC-ESSSPQYYFLHLAFQHCYCAIFL---KIWSKNAITFHLCRGTYEYEKKF 87 (393)
Q Consensus 32 ~~h~~-h~l~~-e~~~~~~~~~~~~~~~~~~~~l~---~Eid~lrqElqr~R~a~EyEKK~ 87 (393)
-||+. |+|++ ||- +-.-||++|-=..+.+-|+ +-++.|++-|||-=.++||++|-
T Consensus 21 ilhyiQ~E~~knE~d-r~~WElERaElqariAfLqgErk~qenlk~dl~rR~kmlE~~lke 80 (577)
T KOG0642|consen 21 ILHYIQHEWTKNERD-RARWELERAELQARIAFLQGERKGQENLKMDLVRRIKMLEFALKE 80 (577)
T ss_pred HHHHHHhHhhhhhhh-hhheehhhhhHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHH
Confidence 47887 99999 884 5888898886555666674 55678888888888899998764
No 148
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=72.07 E-value=11 Score=46.04 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|..|+|.+.|+++.|-.-++-=+|...++.-|.+.|+.+.-.+.|+|--|+.||.-.
T Consensus 445 l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~ 501 (1822)
T KOG4674|consen 445 LSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDEL 501 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888777777777777888888888888888888888888877543
No 149
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=71.92 E-value=20 Score=34.64 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMA-TEVEKLRAELMN 118 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMa-rEvEKLRaElan 118 (393)
.|.-|..+|++...||+++...--||.|-+.++|+++ =+..-+.+ .++++|..++.+
T Consensus 139 ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~l---I~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 139 EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSL---IKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 3566889999999999999999999988766555543 33333344 346677777665
No 150
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=71.88 E-value=37 Score=26.84 Aligned_cols=26 Identities=0% Similarity=-0.250 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEK 85 (393)
+..+...|+.|..++..+...+.-..
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456777777777777766666555
No 151
>PRK14127 cell division protein GpsB; Provisional
Probab=71.87 E-value=19 Score=31.59 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=33.6
Q ss_pred cchhhhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016220 21 LDFLFRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 21 ~d~~~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~E 82 (393)
|.+-.-++..|+-+..-+-... .+.-.||..+.+++ ..|..|++.|+.|+.+++..++
T Consensus 4 ~~LTp~DI~~KeF~~~~RGYd~--~EVD~FLd~V~~dy--e~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 4 IKLTPKDILEKEFKTSMRGYDQ--DEVDKFLDDVIKDY--EAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred CCCCHHHHhhCccCCCCCCCCH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555544332222 24666777777774 3456677777777777776664
No 152
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.82 E-value=17 Score=30.61 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=32.6
Q ss_pred HHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 70 NAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 70 lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.-..|.-++.-||..|-.|..+.+..+.+-.+-..+.+|.++|+.|..+
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3334444444555555566667777777777777788888888888764
No 153
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.71 E-value=21 Score=36.76 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~----q~MEKnlisMarEvEKLRaElana 119 (393)
|+++|+.+.+++..+...++-.++.....++.. ....+.+-.+-.|+++|+.+|.|.
T Consensus 186 l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444333322222 223333334445555666666554
No 154
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=71.69 E-value=16 Score=33.74 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=42.2
Q ss_pred hHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 48 YYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.-++...+..|++-+ .+.+++.+..||...|.-+.-..+..-+.+...+. -|.+..-+|++|+.||.+
T Consensus 105 ~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~---~l~~~~g~I~~L~~~I~~ 174 (184)
T PF05791_consen 105 KEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQS---ILAGENGDIPQLQKQIEN 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHhcccCCHHHHHHHHHH
Confidence 334455555555555 37788888888888888777766665555554443 344555667777777654
No 155
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=71.62 E-value=26 Score=30.33 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 016220 63 FLKIWSKNAITFHLCRG 79 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~ 79 (393)
+.+||+.+.++|+..+.
T Consensus 55 ~~~el~~~~~~l~~~~~ 71 (158)
T PF03938_consen 55 KQKELQKLQQKLQSQKA 71 (158)
T ss_dssp HHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45555555555555443
No 156
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.60 E-value=19 Score=42.10 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhhhhh-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 67 WSKNAITFHLCRGTYEY-EKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 67 id~lrqElqr~R~a~Ey-EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|+.++.++.+++..|+- +|-++-+.-.++-.||+.+-.+.+|||||+..+
T Consensus 367 i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 367 IRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555543 333446666677788888888999998877644
No 157
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.37 E-value=15 Score=35.33 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHH-------hhhhhhhhhhccchhhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFH-------LCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElq-------r~R~a~EyEKK~~~e~~Eq~----q~MEKnlisMarEvEKLRaEl 116 (393)
|+.|+|.|+.||+ +.+..||.|++.-.|--|.. +-+..|+|.|-+--..|..+|
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666655 55668999988766554433 557789999988877777766
No 158
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=71.26 E-value=11 Score=42.60 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=34.1
Q ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 79 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 79 ~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
..+|...|.+--+|..+|+-|+.|.+++||+|.-|.-
T Consensus 417 ~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~a 453 (828)
T PF04094_consen 417 AMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQA 453 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999987753
No 159
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=71.16 E-value=12 Score=38.02 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=32.8
Q ss_pred HHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 71 AITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 71 rqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
.|+++-+|= ++|...+.++.++++.+++....+..|+++.+..|.+..
T Consensus 88 ~H~lml~RL--~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~ 135 (355)
T PF09766_consen 88 EHQLMLARL--EFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLP 135 (355)
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455554 444445667788888888888888888888888776653
No 160
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=71.09 E-value=16 Score=38.53 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-|-.|.+++-.|..|..-+= =|+|+|-+.++||.+....|.|..+.+-|.|+|.||..
T Consensus 188 ~~s~L~~~~~~Le~~~~~~L--deLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~ 245 (414)
T KOG2662|consen 188 ACSFLDSRLSELETEAYPLL--DELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEE 245 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34446666666666655443 36789999999999999999999999999999999864
No 161
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=71.07 E-value=13 Score=32.69 Aligned_cols=84 Identities=15% Similarity=0.081 Sum_probs=53.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcccC--
Q 016220 51 LHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN--VDRRA-- 126 (393)
Q Consensus 51 ~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~--~~~~~-- 126 (393)
|+.-++++ ..+++||+.++++|+..+... ......++++.++.-+-....||+.|=.+|...+. +|.-+
T Consensus 15 l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gLvDFPa~~ 87 (120)
T PF09969_consen 15 LRPILEEI--RELKAELEELEERLQELEDSL-----EVNGLEAELEELEARLRELIDEIEELGVEVKDLDPGLVDFPAKL 87 (120)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhccchh-----hHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcceeEeCCccc
Confidence 34444443 346777777777777766655 34456677788888888899999999999877642 12211
Q ss_pred ---CCCCCCCCCCCCCCC
Q 016220 127 ---DGSYGGATGNSENET 141 (393)
Q Consensus 127 ---gg~Yg~~~g~~e~~~ 141 (393)
-.-.+=.+|-++..+
T Consensus 88 dg~~v~LCWk~GE~~I~~ 105 (120)
T PF09969_consen 88 DGREVYLCWKEGEPEIAY 105 (120)
T ss_pred CCCEEEEEeCCCCcceee
Confidence 124455566666654
No 162
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=71.04 E-value=18 Score=34.78 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
..++.|.+-|||---++..||++|..|.
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788888888888888888774
No 163
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.75 E-value=19 Score=34.28 Aligned_cols=57 Identities=2% Similarity=-0.048 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~----q~MEKnlisMarEvEKLRaEla 117 (393)
..|++||+.|++||..++..++-++....+.+++. ..+++..-.+..|+++|+.|+.
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655554433333322222 2245555556666666666653
No 164
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=70.64 E-value=12 Score=33.69 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 016220 101 NYITMATEVEKLRAELMN 118 (393)
Q Consensus 101 nlisMarEvEKLRaElan 118 (393)
.++....+++.||.+|.+
T Consensus 146 Dy~~~~~~~~~l~~~i~~ 163 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKE 163 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666666654
No 165
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.59 E-value=24 Score=32.54 Aligned_cols=17 Identities=0% Similarity=-0.271 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhhhh
Q 016220 64 LKIWSKNAITFHLCRGT 80 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a 80 (393)
+.|+..|+.++..+...
T Consensus 122 ~~~~~~L~~~~~~l~~~ 138 (194)
T PF08614_consen 122 EAELAQLEEKIKDLEEE 138 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 166
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.49 E-value=39 Score=28.39 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+..-|........+++.-++-|++...+....+..|...|..|-.++.||...|..
T Consensus 51 f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 51 FDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677788888899999999999999999999999999999999888764
No 167
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.30 E-value=20 Score=39.72 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
-.||..|-.+|+|.+++.-.| ...+.+|.+++|+-+-+--.|+|+|+.+|.+.
T Consensus 291 d~~i~~L~~di~~~~~S~~~e---~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 291 DSEIAQLSNDIERLEASLVEE---REKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556666666666665443 34567889999999999999999999988764
No 168
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.13 E-value=14 Score=42.78 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCCchhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHH----HHHHHHHHHHHHHHHHH
Q 016220 43 SSSPQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQ----VMEKNYITMATEVEKLR 113 (393)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q----~MEKnlisMarEvEKLR 113 (393)
-|-.|+-+|.++-+|+|.+. ++.|++++.. .=-.+-.+|..--|..|.+| +....+..|-.+||-|+
T Consensus 277 qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad----~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 277 QQADLQRELKRARKEAKEAQEAKERYKEEMADTAD----AIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666655444 2333332222 11222345555555555544 34456788999999999
Q ss_pred HHHhc
Q 016220 114 AELMN 118 (393)
Q Consensus 114 aElan 118 (393)
+|++|
T Consensus 353 aEmee 357 (1243)
T KOG0971|consen 353 AEMEE 357 (1243)
T ss_pred HHHHh
Confidence 99997
No 169
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=70.00 E-value=20 Score=32.14 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 016220 70 NAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 123 (393)
Q Consensus 70 lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~~ 123 (393)
++|||..+|+.++ |....-. -..+-.|+++-.|-+|.+|.|.+|++..+..
T Consensus 63 vkqel~EAr~nV~--kRlefI~-~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 63 VKQELEEARTNVG--KRLEFIS-KEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred hHHHHHHHHhhHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888764 2222222 2467889999999999999999999875543
No 170
>KOG3667 consensus STAT protein [Transcription; Signal transduction mechanisms]
Probab=69.99 E-value=16 Score=40.65 Aligned_cols=79 Identities=6% Similarity=-0.118 Sum_probs=46.8
Q ss_pred ccccCCCchhHHHHHHHHhHHHHHH-HHHHHHHHHHHH-hhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAIF-LKIWSKNAITFH-LCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~l-~~Eid~lrqElq-r~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
..+|+|++|-.++.++-++++|.+. -.++|.||.+.+ +.-+++--+-+++-++.-....|+.+|-.|+.++.|-|.||
T Consensus 133 ~~~~~qe~l~~~~~~~~~~~q~~~~s~~~l~~lq~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~lq~~l~~l~~~r~Ev 212 (682)
T KOG3667|consen 133 VVQEKQEELEQKTQDVRNEVQKLEQSTKELEDLQDVEDLRYKTQQAQLLSLNERNSNKTLQQQAQLQRMLNTLDQYRKEV 212 (682)
T ss_pred hhhhhhHHHHHHHhHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHhhhccccccchhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5778888888888888888777765 566666663321 11111111134444455555555566666666666666665
Q ss_pred h
Q 016220 117 M 117 (393)
Q Consensus 117 a 117 (393)
.
T Consensus 213 ~ 213 (682)
T KOG3667|consen 213 V 213 (682)
T ss_pred H
Confidence 4
No 171
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=69.97 E-value=21 Score=40.41 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHhhhhhhccccccccCCCchhHHHHHHHHhHHHHH------------HHHHHHHHHHHHHhhhhhhhhh----------
Q 016220 27 QVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAI------------FLKIWSKNAITFHLCRGTYEYE---------- 84 (393)
Q Consensus 27 ~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~------------l~~Eid~lrqElqr~R~a~EyE---------- 84 (393)
++-.+.|-+-|. .|.-.++-.++..=++|+-++. |..++|.+-+||||+|.-.|.+
T Consensus 122 elaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdt 199 (916)
T KOG0249|consen 122 ELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDT 199 (916)
T ss_pred HHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q ss_pred ---------------hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 85 ---------------KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 85 ---------------KK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+....-+.+++....|+|..|-++-|||+.++..
T Consensus 200 vdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~ 248 (916)
T KOG0249|consen 200 VDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIED 248 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
No 172
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=69.63 E-value=18 Score=30.68 Aligned_cols=17 Identities=12% Similarity=-0.109 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhhhh
Q 016220 64 LKIWSKNAITFHLCRGT 80 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a 80 (393)
..|.+.|++||+-+|.-
T Consensus 23 ~~e~~~L~eEI~~Lr~q 39 (86)
T PF12711_consen 23 EEENEALKEEIQLLREQ 39 (86)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555433
No 173
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.58 E-value=19 Score=35.34 Aligned_cols=56 Identities=14% Similarity=0.045 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhhhh--hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 64 LKIWSKNAITFHLCRGTYE--YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~E--yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+.++-.+..||+.+|.-++ -+|-..+....+..+++.-+-..-+.+..|+-||++.
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443332 2333444445555555555555555555555555543
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=69.47 E-value=2.4 Score=46.01 Aligned_cols=49 Identities=12% Similarity=-0.021 Sum_probs=32.8
Q ss_pred hhHHhh---hhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 016220 25 FRQVYS---KALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 25 ~~~~~~---k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a 80 (393)
-|+|.+ .-|-|.||..+|-++ |... .-| ..+|++||+-||+|-|++|.-
T Consensus 621 hrdirNl~~ell~Qfhm~~~Ems~-ller----y~e--Ne~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 621 HRDIRNLALELLLQFHMFMREMSR-LLER----YNE--NEMLKAELKFLREENQTLRCG 672 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH----hhh--hHHHHHHHHHHHHhhhhhhcc
Confidence 455554 234566998888754 3321 112 456999999999999999964
No 175
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.44 E-value=27 Score=36.16 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKF----YNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~----~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.|+.|+|.||.|...+-..|---|+. ..+++++.+.+.+.|..+-.+++.|.++|.
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777766666666432222 235666677777777777666666666544
No 176
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=69.33 E-value=16 Score=40.39 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=53.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhc-----------------cchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKK-----------------FYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK-----------------~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+....++|+..+.|+++|+.|+.|.|++..+++--|. .-.++-||.+++.|+=...+..++++
T Consensus 350 ~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~ 429 (632)
T PF14817_consen 350 EREALALELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQS 429 (632)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 3344478888888999999999999999888865443 23455677788888878888888888
Q ss_pred HHHHhcCC
Q 016220 113 RAELMNAP 120 (393)
Q Consensus 113 RaElanae 120 (393)
.+|+.+..
T Consensus 430 ~~E~~~~~ 437 (632)
T PF14817_consen 430 PAEAQEFV 437 (632)
T ss_pred hHHHHHHH
Confidence 88876543
No 177
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.96 E-value=24 Score=28.09 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
|-+|..||..++-....+-.-+.--.+-| +.++..|-.|-.|||+||++
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn-------~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRN-------RELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcC
Confidence 55678888888877777655554444444 44555555556688889874
No 178
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=68.90 E-value=25 Score=29.04 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+.|+|.|--|.-.+|..++.=++--.--|=|-.+--.=+..+.+|-.++|.+|++.
T Consensus 14 QnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 14 QNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 44444444444444444433333222223333344444566788999999998763
No 179
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=68.77 E-value=30 Score=29.00 Aligned_cols=31 Identities=6% Similarity=-0.202 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 016220 49 YFLHLAFQHCYCAIFLKIWSKNAITFHLCRG 79 (393)
Q Consensus 49 ~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~ 79 (393)
.+++..++|=.......|||.|-.|-+..+.
T Consensus 21 ~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 21 KEFEEILEERDVVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Confidence 3455556665556678899999888877665
No 180
>PRK11546 zraP zinc resistance protein; Provisional
Probab=68.75 E-value=4.9 Score=36.74 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=43.0
Q ss_pred cccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.|+.|-|. ..-+|+..|+. +-.-||.+|-.-|.||+-+=+.=.-+.+.=..+..+++.+-.. |..+-.|++.|++
T Consensus 43 ~LT~EQQa-~~q~I~~~f~~-~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k---L~e~r~~~~~~~~ 117 (143)
T PRK11546 43 PLTTEQQA-AWQKIHNDFYA-QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQS---LDELRVKRDIAMA 117 (143)
T ss_pred cCCHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 36666653 44455555554 2344666666666666655443333333333333334443332 2233346667776
Q ss_pred cCCCCcccCCCCCCCC
Q 016220 118 NAPNVDRRADGSYGGA 133 (393)
Q Consensus 118 nae~~~~~~gg~Yg~~ 133 (393)
++ .+++..+-+|++-
T Consensus 118 k~-Gv~~g~~~g~~g~ 132 (143)
T PRK11546 118 EA-GIPRGAGMGYGGC 132 (143)
T ss_pred Hc-CCCcccccCcCCC
Confidence 63 3344333344443
No 181
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=68.64 E-value=16 Score=38.17 Aligned_cols=59 Identities=15% Similarity=-0.005 Sum_probs=41.0
Q ss_pred hhHHHHHHHHhHHHHHH-----------------------------HHHHHHHHHHHHhhhhhhhhhhccchhh----HH
Q 016220 47 QYYFLHLAFQHCYCAIF-----------------------------LKIWSKNAITFHLCRGTYEYEKKFYNDH----LE 93 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l-----------------------------~~Eid~lrqElqr~R~a~EyEKK~~~e~----~E 93 (393)
....|..|+|.-|+.++ ++||+..|+ .|.-||-=||.-+++ .|
T Consensus 258 dvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~----kRDPI~~lk~~li~~~late~ 333 (394)
T KOG0225|consen 258 DVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQ----KRDPIEGLKKRLIELGLATEE 333 (394)
T ss_pred chhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHh----ccChHHHHHHHHHHhcccCHH
Confidence 44567778888777774 566655554 567788888876665 68
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 94 SLQVMEKNYITMATEV 109 (393)
Q Consensus 94 q~q~MEKnlisMarEv 109 (393)
.+++|||.+-.++.|.
T Consensus 334 ELKai~k~irkeVdea 349 (394)
T KOG0225|consen 334 ELKAIDKEIRKEVDEA 349 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888766555544
No 182
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=68.46 E-value=27 Score=35.41 Aligned_cols=18 Identities=0% Similarity=-0.119 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~ 81 (393)
+.+|++|++|+..++..|
T Consensus 87 ~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555555
No 183
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.41 E-value=22 Score=32.73 Aligned_cols=59 Identities=19% Similarity=0.026 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhHHHHH-HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAI-FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~-l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+...|..+-++|++.. +..+.+.++++|+++|..++-= =++.+.+-++|..+=+||.++
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~l-------d~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEHQENQARIQQLRAEIEEL-------DEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655 3566677777777777766432 234444455555555555444
No 184
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=68.36 E-value=14 Score=35.05 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|..-|+.|-..+..+-..+.-||.. ..+.+|++..++.++|..|+..|
T Consensus 90 ~~~~l~~L~~ri~~L~~~i~ee~~~------r~~~ie~~~~~l~~~l~~l~~~~ 137 (247)
T PF06705_consen 90 LQSRLDSLNDRIEALEEEIQEEKEE------RPQDIEELNQELVRELNELQEAF 137 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444433 23334455555555555555444
No 185
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=68.33 E-value=15 Score=40.22 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=30.0
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 84 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 84 EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|-+.|.|-=||++..+||--.++.|.+++|--=+|.
T Consensus 458 ks~~nkeD~eq~r~kakake~qa~~~~~~r~rdanl 493 (563)
T KOG2341|consen 458 KSRSNKEDPEQLRMKAKAKEMQAAEALQKRQRDANL 493 (563)
T ss_pred hhhhcccChHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence 456788889999999999999999999998755443
No 186
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=68.30 E-value=55 Score=26.36 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYE-KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyE-KK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..|.+.|+.+..||+.+....+-. --..+....-+..+.|.|..+-.-+++|+..+.+
T Consensus 31 ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 31 EELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888888888888887733321 2112234555667778888888888887776654
No 187
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=68.13 E-value=15 Score=31.23 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=44.6
Q ss_pred ccCCCchhHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHhhhhhh--hhhhccchhhHHHHHHHHHHHHHHHH
Q 016220 41 CESSSPQYYFLHLAFQHCYC-----------AIFLKIWSKNAITFHLCRGTY--EYEKKFYNDHLESLQVMEKNYITMAT 107 (393)
Q Consensus 41 ~e~~~~~~~~~~~~~~~~~~-----------~~l~~Eid~lrqElqr~R~a~--EyEKK~~~e~~Eq~q~MEKnlisMar 107 (393)
.||- .++..++.|+++..+ -.+-.|...+-.|+....+.+ +.++..-++++.++|..||.-..|.-
T Consensus 13 e~Ra-~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~KL~lT~ 91 (97)
T PF14966_consen 13 ERRA-QLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQEKEKLELTA 91 (97)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 355666666655331 113344444444554444444 47777888999999999998888887
Q ss_pred HHHHHH
Q 016220 108 EVEKLR 113 (393)
Q Consensus 108 EvEKLR 113 (393)
.+.-||
T Consensus 92 ~lQ~lk 97 (97)
T PF14966_consen 92 KLQVLK 97 (97)
T ss_pred HHHhhC
Confidence 776553
No 188
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.01 E-value=30 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
|+.++...+++.+-.|-..|++||.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444443
No 189
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.83 E-value=23 Score=34.05 Aligned_cols=95 Identities=11% Similarity=-0.045 Sum_probs=51.4
Q ss_pred hhhHHhhhhhhccccccc---cCCCchhHHHHHHHHhHHHHH-------HHHHHHHHHHHHHhhhhhhhhhhcc----ch
Q 016220 24 LFRQVYSKALHFGHPWIC---ESSSPQYYFLHLAFQHCYCAI-------FLKIWSKNAITFHLCRGTYEYEKKF----YN 89 (393)
Q Consensus 24 ~~~~~~~k~~h~~h~l~~---e~~~~~~~~~~~~~~~~~~~~-------l~~Eid~lrqElqr~R~a~EyEKK~----~~ 89 (393)
+|+.|.+.+|.++.+-|. |.-..|+-.+..+--|||.+. +++||..|++|..--|--++-=|.+ ..
T Consensus 72 qF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtp 151 (201)
T KOG4603|consen 72 QFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTP 151 (201)
T ss_pred hhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 566777777777766221 111113222223333333333 3444555555544433333332322 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|-.||...|=...++|-|+++.+=.||-.
T Consensus 152 edk~~v~~~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 152 EDKEQVYREYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888899999998887777643
No 190
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=67.79 E-value=25 Score=40.62 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
...++..+|..++.++..++..+..=++...++.++++..++.+.....+++.|++++..
T Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~ 285 (1163)
T COG1196 226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE 285 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345556666666666666666655555666666666666666666666666666544
No 191
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=67.73 E-value=16 Score=27.62 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
||.+|+.-++|+..+|.+|+
T Consensus 20 lk~~l~~Q~kE~~~LRntI~ 39 (45)
T PF11598_consen 20 LKELLRQQIKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999986
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=67.70 E-value=11 Score=40.55 Aligned_cols=53 Identities=4% Similarity=-0.003 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
-+..++|.++++|++.|.-|.-...-++-.-|=+..||..|+.++.+||.|+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~e~s~~~~~~~~~~~~~ 497 (498)
T PRK13531 445 EIKQQLEELESDWRQQHTLFSEQQPCLFIPSDWLARIEASLQQVGEQIRQAQQ 497 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778889999999999999999999999999999999999999999999975
No 193
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=67.52 E-value=28 Score=33.20 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 99 EKNYITMATEVEKLRA 114 (393)
Q Consensus 99 EKnlisMarEvEKLRa 114 (393)
.+++.+.++|+||+|.
T Consensus 131 K~~Y~~~c~e~Ekar~ 146 (234)
T cd07652 131 KARYDSLADDLERVKT 146 (234)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3478888888888775
No 194
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=67.47 E-value=22 Score=33.95 Aligned_cols=73 Identities=15% Similarity=0.025 Sum_probs=47.1
Q ss_pred ccCCCchhHHHHHHHHhHHHHH---HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 41 CESSSPQYYFLHLAFQHCYCAI---FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 41 ~e~~~~~~~~~~~~~~~~~~~~---l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.||+ +|-...-++|+-.+-+. .+.||+.|+-||.+++..|+-++|.-.. |.++.++.-|..+.+|-|-+.-||
T Consensus 86 ~~r~-~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n--~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 86 MERS-NLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLN--EEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHH-HHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3453 35555555666555444 4889999999999999999987774332 234555666666666666555443
No 195
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=67.34 E-value=13 Score=35.90 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHH
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVM 98 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~M 98 (393)
-|+.|++|-.+ |..+|+.++.||.+++ .|-..-.++.||.|.|
T Consensus 119 AL~eaL~ENe~--Lh~~ie~~~eEi~~lk----~en~~L~elae~~~~l 161 (200)
T PF07412_consen 119 ALEEALEENEK--LHKEIEQKDEEIAKLK----EENEELKELAEHVQYL 161 (200)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 35666777555 6677788888887777 3333444555555543
No 196
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.30 E-value=33 Score=35.82 Aligned_cols=54 Identities=7% Similarity=-0.028 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
..+++|++++..|..-++..=|.=|++..++.+-.+++|.-+++|..-+|-|-.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 345788888888888888888888888888888888888888888877776644
No 197
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.28 E-value=23 Score=37.96 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|..+|+.|...+......++-.+..+.+..+.++.|+++|..+-.+.+++...|.+.
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L 405 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSL 405 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999998888888888777777666666666555543
No 198
>PLN02678 seryl-tRNA synthetase
Probab=66.88 E-value=28 Score=36.78 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEK---KFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEK---K~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
-.|+.|||.||.|...+-..|---| ....+++++++.|.+-|..+-.++++|..||.
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777766664312 12235566677777777777777666666654
No 199
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=66.84 E-value=8.5 Score=37.92 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|.++|..|+.++..++..++...+.....-.-.+.|+.=+-....+|+.|++++
T Consensus 279 l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~ 332 (370)
T PF02181_consen 279 LEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELY 332 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777666555222222223333333333444444444433
No 200
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=66.74 E-value=32 Score=29.37 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=7.6
Q ss_pred chhhHHHHHHHHHHH
Q 016220 88 YNDHLESLQVMEKNY 102 (393)
Q Consensus 88 ~~e~~Eq~q~MEKnl 102 (393)
+.+..++++.||+||
T Consensus 53 ~~~~~~~l~~~~~~l 67 (106)
T PF05837_consen 53 DEELSEKLEKLEKEL 67 (106)
T ss_pred chHHHHHHHHHHHHH
Confidence 444555555555554
No 201
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=66.68 E-value=20 Score=33.55 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=45.2
Q ss_pred cccccCCCchhHHHHHHHHhHHH----------------HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHH----
Q 016220 38 PWICESSSPQYYFLHLAFQHCYC----------------AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQV---- 97 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~----------------~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~---- 97 (393)
|-++|+.-.+-..|+.++|.|.. .+|+.-||.+-+||..++..|.--+|-+-+-+|+.-.
T Consensus 48 meVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 48 MEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566554455556666665432 2245556666667777777765555555555554432
Q ss_pred ---HHHHHHHHHHHHHHHHH
Q 016220 98 ---MEKNYITMATEVEKLRA 114 (393)
Q Consensus 98 ---MEKnlisMarEvEKLRa 114 (393)
+=..|+.+..|-|+||-
T Consensus 128 K~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 128 KAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 12247788899999884
No 202
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=66.66 E-value=14 Score=41.95 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~ 81 (393)
.+|++.|++||+++...+
T Consensus 928 ~~E~~rL~K~l~kl~~ei 945 (995)
T PTZ00419 928 KKELAKLEKKLAKLQKSL 945 (995)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 203
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=66.63 E-value=13 Score=35.65 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=29.6
Q ss_pred HHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 016220 55 FQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI 103 (393)
Q Consensus 55 ~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli 103 (393)
|+|||... +++||..--.||.....-.+-.=..--|.+|-|+.|.|+|.
T Consensus 49 T~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVEIMKeMQkDMD 99 (205)
T PF15079_consen 49 TQELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVEIMKEMQKDMD 99 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHH
Confidence 44544433 35555555555665555555444445688899999998875
No 204
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.57 E-value=14 Score=42.98 Aligned_cols=47 Identities=11% Similarity=-0.152 Sum_probs=31.4
Q ss_pred hhhcccc-ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 016220 32 ALHFGHP-WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 32 ~~h~~h~-l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R 78 (393)
+||..|. |+.=|-....++=.+.++.=+..+|+.|+|.|.++..+.|
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r 222 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR 222 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666 3322222355555666777777889999999999887776
No 205
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.53 E-value=23 Score=32.74 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=51.9
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhh-hh-------hhccchhhHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTY-EY-------EKKFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~-Ey-------EKK~~~e~~Eq~q~MEKnlisMarE 108 (393)
-|+|....-...+..=++|||+.+ +-+|+|.|.++.+++|.-+ |. -.+---+-+|+-+.|...|..|-.+
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~ 99 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366665544445555555555544 4788899998888888765 22 2222346678888888888888888
Q ss_pred HHHHHHHH
Q 016220 109 VEKLRAEL 116 (393)
Q Consensus 109 vEKLRaEl 116 (393)
...||..-
T Consensus 100 E~qLr~rR 107 (159)
T PF05384_consen 100 EKQLRERR 107 (159)
T ss_pred HHHHHHHH
Confidence 88887653
No 206
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=66.48 E-value=29 Score=33.63 Aligned_cols=27 Identities=7% Similarity=-0.170 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKF 87 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~ 87 (393)
..|++|++.+++|+.+++....-|-.+
T Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 145 AALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 457888888888888888877777666
No 207
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.41 E-value=27 Score=40.36 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
++.+|+.++.|++.+-..+..-++...+.-++++.++.++..+.+++++++..+..
T Consensus 861 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 861 LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666777777777777778888888888888888888777654
No 208
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.38 E-value=12 Score=33.56 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 016220 102 YITMATEVEKLRAELM 117 (393)
Q Consensus 102 lisMarEvEKLRaEla 117 (393)
+..+-.|+++|.+.|.
T Consensus 118 i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 118 IEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 209
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=66.32 E-value=18 Score=38.52 Aligned_cols=68 Identities=12% Similarity=-0.040 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhHHHHH-HHHHHHHHHH--HHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAI-FLKIWSKNAI--TFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~-l~~Eid~lrq--Elqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
+-.+|+++.+|+++.. ...++|...+ +..++-.+.|-+|+-.-+++.|++..||+=-.++-++++|+.
T Consensus 148 ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 148 LDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777665543 2222332222 233344444444555555555555555555555555555544
No 210
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.16 E-value=9.8 Score=32.99 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhcCC
Q 016220 104 TMATEVEKLRAELMNAP 120 (393)
Q Consensus 104 sMarEvEKLRaElanae 120 (393)
.+-.|-++||.-|...+
T Consensus 40 ~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 40 RLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34567888888776543
No 211
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=66.07 E-value=14 Score=39.52 Aligned_cols=55 Identities=18% Similarity=0.021 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYIT-MATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlis-MarEvEKLRaEla 117 (393)
++.-||.||-|+.|+|+-+---.|-+-|.+-|..+=|+.+-. .+|+-+||.-||.
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~e 306 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELE 306 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 466777778888887777766666666666665555554432 3444455555544
No 212
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=66.07 E-value=18 Score=27.84 Aligned_cols=46 Identities=4% Similarity=-0.114 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarE 108 (393)
..-|.++|+.++.||..+|...-- +..++..+.+.+-|++--|-.+
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~~---~~l~n~~~ir~~Rr~IARi~Tv 54 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKAT---GQLENPHRIREIRRDIARILTV 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---SSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cccccccHHHHHHHHHHHHHHH
Confidence 344899999999999999976654 4457777888888877655443
No 213
>PRK02224 chromosome segregation protein; Provisional
Probab=65.83 E-value=30 Score=37.99 Aligned_cols=80 Identities=9% Similarity=-0.034 Sum_probs=0.0
Q ss_pred ccccCCCchhH------HHHHHHHhH--HHHHHHHHHHHHHHHHHhhhhhhhhhhccch-------------hhHHHHHH
Q 016220 39 WICESSSPQYY------FLHLAFQHC--YCAIFLKIWSKNAITFHLCRGTYEYEKKFYN-------------DHLESLQV 97 (393)
Q Consensus 39 l~~e~~~~~~~------~~~~~~~~~--~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~-------------e~~Eq~q~ 97 (393)
|+|.|...-.. ++....+++ +...|..+|+.++.++..+....+.++.... +..|++..
T Consensus 455 p~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~ 534 (880)
T PRK02224 455 PECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEE 534 (880)
T ss_pred CCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016220 98 MEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 98 MEKnlisMarEvEKLRaElan 118 (393)
-+..+..+-.|+++|++++..
T Consensus 535 ~~~~~~~l~~e~~~l~~~~~~ 555 (880)
T PRK02224 535 KRERAEELRERAAELEAEAEE 555 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 214
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.79 E-value=26 Score=30.47 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHH-------------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 49 YFLHLAFQHCYCAI-------------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 49 ~~~~~~~~~~~~~~-------------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
.+++++.+||.++- ++..++.++++|..---.|| ...+.+||+...+-..+++|+.+
T Consensus 38 ~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie----------~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 38 REINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE----------LRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665532 35566666666544333333 56677778887777778777777
Q ss_pred Hhc
Q 016220 116 LMN 118 (393)
Q Consensus 116 lan 118 (393)
|..
T Consensus 108 l~~ 110 (121)
T PRK09343 108 INE 110 (121)
T ss_pred HHH
Confidence 754
No 215
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=65.71 E-value=15 Score=35.00 Aligned_cols=60 Identities=13% Similarity=-0.088 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhh-ccchhhHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEK-KFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEK-K~~~e~~Eq~q~MEKnlisMarE 108 (393)
++-++..++..|.|+ +.-.+.+.+|+.++|..-.++| +.....-.+...-|+.+...+.+
T Consensus 116 ~~k~~~~a~~~leKA--K~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~ 176 (234)
T cd07652 116 AEKKVQDAEAAAEKA--KARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQA 176 (234)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHH
Confidence 444444444444443 6778899999999999866666 44444333343444444444433
No 216
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=65.16 E-value=16 Score=29.57 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=31.7
Q ss_pred HHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 50 FLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 50 ~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.|..-+.|..+++ +..-|..||+.+. ++-+++..+-+.+-..-.||+.|+..|..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~--------------e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIK--------------ELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777766655 2444444444443 22244555556666667777777776654
No 217
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.16 E-value=20 Score=37.58 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhHHHHH--HHHHHHHHHH----HHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 47 QYYFLHLAFQHCYCAI--FLKIWSKNAI----TFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~--l~~Eid~lrq----Elqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
....|+.-++|+|+.. |..+||.|+. |++-...+++.||-..--+-||+-.+ +--.-.||.-|+.||+..|
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~---~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDL---TELHQNEIYNLKQELASME 289 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHH
Confidence 3344555556666544 5666666665 66667777776665444433443322 2233467777887777655
No 218
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.02 E-value=36 Score=31.92 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
|+.|.+.|++|+..++..+|.=.+.+.++.++.+++|..+-+|..=|++-|-
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888777777888889999999999999888888775
No 219
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=64.76 E-value=66 Score=29.15 Aligned_cols=37 Identities=5% Similarity=0.120 Sum_probs=32.5
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 82 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 82 EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..-++....+..+++++..+|.+.-.+|.||...++.
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667889999999999999999999999998864
No 220
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.61 E-value=50 Score=27.72 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHH----------HHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKN----------AITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~l----------rqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+|--+|+.|..- -..|+-|||.| .|++|+.|-+++-|. ||+|.=..|.- |.||+=
T Consensus 8 kLE~KiqqAvdT--I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~en-------eqlk~e~~~WQ------erlrsL 72 (79)
T COG3074 8 KLEAKVQQAIDT--ITLLQMEIEELKEKNNSLSQEVQNAQHQREALEREN-------EQLKEEQNGWQ------ERLRAL 72 (79)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH------HHHHHH
Q ss_pred HhcCCCC
Q 016220 116 LMNAPNV 122 (393)
Q Consensus 116 lanae~~ 122 (393)
|-+.+++
T Consensus 73 LGkme~V 79 (79)
T COG3074 73 LGKMEEV 79 (79)
T ss_pred HhhhccC
No 221
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.34 E-value=10 Score=38.44 Aligned_cols=47 Identities=9% Similarity=-0.022 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh---hhhccchhhHHHHHHHHHHHHHH
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYE---YEKKFYNDHLESLQVMEKNYITM 105 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~E---yEKK~~~e~~Eq~q~MEKnlisM 105 (393)
|..-|+.||+.|++|++...++-+ -|+....+..+++..+++.|..|
T Consensus 95 kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 95 KLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 455689999999999988754322 33444555667788888888877
No 222
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.23 E-value=22 Score=39.79 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCC
Q 016220 144 RPVGQNAYEDGYGV 157 (393)
Q Consensus 144 ~~~g~~~Y~DgYg~ 157 (393)
+.+|...+-.++|.
T Consensus 637 ~~~Gd~V~v~~~~~ 650 (782)
T PRK00409 637 LKVGDEVKYLSLGQ 650 (782)
T ss_pred CCCCCEEEEccCCc
Confidence 45566667666663
No 223
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.07 E-value=32 Score=29.35 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.+++.++.-+..+.+|||.||.+|.+.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888899999999999998753
No 224
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.97 E-value=12 Score=39.78 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=23.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 86 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 86 K~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+...++.+++..+++....|...|++||.+...+
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA 416 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777788888888887776554
No 225
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.94 E-value=26 Score=39.32 Aligned_cols=15 Identities=7% Similarity=-0.263 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhh
Q 016220 64 LKIWSKNAITFHLCR 78 (393)
Q Consensus 64 ~~Eid~lrqElqr~R 78 (393)
++|+|.|.+.++.++
T Consensus 54 ~~e~~rl~~~~~~~~ 68 (717)
T PF09730_consen 54 QAENERLSQLNQELR 68 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 226
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=63.93 E-value=11 Score=34.98 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=39.1
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+|.+.|-++..+|+...+++.|+.||++|..+=+.+--.+|...-.-|..+.+|+-+..|-.+++.|
T Consensus 33 Elns~iGl~~~~~~~~~~~~~L~~iQ~~Lf~l~~~la~~~~~~~i~~~~v~~LE~~id~~~~~l~~l 99 (171)
T TIGR00636 33 ELNSFIGVALSLLKWEDLKEDLERIQNDLFDIGGDLATPGDTKKITEEDVKWLEERIDQYRKELPPL 99 (171)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhHHhcCCCcccCcCHHHHHHHHHHHHHHHhhCCCC
Confidence 3556666665555445678889999999988766555321111233455555666666555444433
No 227
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.79 E-value=86 Score=31.01 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 97 VMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElanae 120 (393)
..|+-|-.|..+|++|+..|+-.+
T Consensus 52 iqE~ALk~a~~~i~eLe~ri~~lq 75 (233)
T COG3416 52 IQEQALKKASTQIKELEKRIAILQ 75 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888899999999999987654
No 228
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=63.66 E-value=24 Score=42.03 Aligned_cols=72 Identities=17% Similarity=0.006 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhHHHHHH---------HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIF---------LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATE-VEKLRAE 115 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l---------~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarE-vEKLRaE 115 (393)
.+..+|+..|+|||..++ .++.+..+++-++++..++ ++....|.++++-+-..-=..-||| +|+||.|
T Consensus 1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~e 1697 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLLEKRMEGSQAARERAEQLRTE 1697 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q ss_pred Hhc
Q 016220 116 LMN 118 (393)
Q Consensus 116 lan 118 (393)
.++
T Consensus 1698 A~~ 1700 (1758)
T KOG0994|consen 1698 AEK 1700 (1758)
T ss_pred HHH
No 229
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.64 E-value=13 Score=37.68 Aligned_cols=74 Identities=22% Similarity=0.174 Sum_probs=0.0
Q ss_pred eccchhhhHHhhhhhhcccc-ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----ccchhhH
Q 016220 19 CTLDFLFRQVYSKALHFGHP-WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEK-----KFYNDHL 92 (393)
Q Consensus 19 ~~~d~~~~~~~~k~~h~~h~-l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEK-----K~~~e~~ 92 (393)
.++|-+..|+.. |-+ ||.|- =--.|-++|.|| -+.||..|||=+.-.|+-+- || |-++|.-
T Consensus 89 tEI~eLksQL~R-----MrEDWIEEE--CHRVEAQLALKE-----ARkEIkQLkQvieTmrssL~-ekDkGiQKYFvDIN 155 (305)
T PF15290_consen 89 TEIDELKSQLAR-----MREDWIEEE--CHRVEAQLALKE-----ARKEIKQLKQVIETMRSSLA-EKDKGIQKYFVDIN 155 (305)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHH--HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhc-hhhhhHHHHHhhhh
Q ss_pred HHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITM 105 (393)
Q Consensus 93 Eq~q~MEKnlisM 105 (393)
-|-+.+|.=|.+|
T Consensus 156 iQN~KLEsLLqsM 168 (305)
T PF15290_consen 156 IQNKKLESLLQSM 168 (305)
T ss_pred hhHhHHHHHHHHH
No 230
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.58 E-value=28 Score=33.61 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI-----------------TMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli-----------------sMarEvEKLRaEla 117 (393)
|..||+..-+||+.+...|+-..+.-..--+..+.+|+++- .|-+++||.++-..
T Consensus 122 lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~ 193 (241)
T cd07656 122 LHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYS 193 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776666555555566667777754 35667777665443
No 231
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=63.46 E-value=9.1 Score=36.90 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 016220 101 NYITMATEVEKLRAELMN 118 (393)
Q Consensus 101 nlisMarEvEKLRaElan 118 (393)
|++.+..||.....||.+
T Consensus 153 ~l~~~~e~v~~k~~ele~ 170 (223)
T cd07605 153 KLDQALEELNDKQKELEA 170 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 232
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.38 E-value=94 Score=33.54 Aligned_cols=206 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred ceeeeeeeeeeeeccch---hhhHHhhhhhhcc----ccccccCCCchhHHHHHHHHhHHHHHH----------------
Q 016220 7 HKLEIRCTLIFTCTLDF---LFRQVYSKALHFG----HPWICESSSPQYYFLHLAFQHCYCAIF---------------- 63 (393)
Q Consensus 7 ~~~~~~~~~~~~~~~d~---~~~~~~~k~~h~~----h~l~~e~~~~~~~~~~~~~~~~~~~~l---------------- 63 (393)
|.+.|+-+|+-|-+.|. ..++++.+..|.. |-.|++.--.-..+.--.|.+|++.++
T Consensus 66 a~~~l~e~l~eiy~p~~~g~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~ 145 (460)
T KOG3771|consen 66 ASKKLAESLQEIYEPDWPGRDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSF 145 (460)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHhhhhhhhhhhccchhhHHHH--------------------------HHH---HHHHHH
Q 016220 64 ----------LKIWSKNAITFHLCRGTYEYEKKFYNDHLESL--------------------------QVM---EKNYIT 104 (393)
Q Consensus 64 ----------~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~--------------------------q~M---EKnlis 104 (393)
.+-+...+.||+.++..||+ .|.+++|+| +.| -+||..
T Consensus 146 ~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~---lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~ 222 (460)
T KOG3771|consen 146 EKLQAKKKKDEAKLAKAEEELEKAQQVFEE---LNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYD 222 (460)
T ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCccccc
Q 016220 105 MATEVEKLRAELMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAY 184 (393)
Q Consensus 105 MarEvEKLRaElanae~~~~~~gg~Yg~~~g~~e~~~~g~~~g~~~Y~DgYg~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
|-.-++|.........+... |=...+...-.+...+.+......-+..+.+
T Consensus 223 v~~kl~dqh~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~sspl~~pt~~s~~ 273 (460)
T KOG3771|consen 223 VLDKLFDQHSDKVFTYRAQP-----------------------------SDALPKLEALSPSPTDGGSSPLTSPTSRSSL 273 (460)
T ss_pred HHHHHhccccchhhhhhccc-----------------------------cccccchhccCCCCCCcCCCCCCCCCCCCCC
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q 016220 185 AATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGP-SYDPAKGPGYDPTKGPGYDA 247 (393)
Q Consensus 185 ~g~~~g~~~~p~Yd~pRgp~Y~~sr~P~Y~ss~sP~Yg~sRsP-gYd~~kgP~Yd~~R~P~Yga 247 (393)
.....+.+.+| +++- ..-+.+..=++-++..|.=+.+-+| +|+....|++-..+++.|++
T Consensus 274 ~~~~a~~~~~p--sps~-~~~g~a~~~~~pa~~~~s~~~s~~P~~~~~a~~~~~~~~~t~~~~~ 334 (460)
T KOG3771|consen 274 GQEPASPAALP--SPSQ-ASAGAASEEVKPASEGPSPAASTTPSGYPFAATPKEAAETTSNEEA 334 (460)
T ss_pred CCCCCCccCCC--CCcc-ccCCcccccCCCCCCCCCccCCCCCCCCCcccCcccccCCCcCccc
No 233
>COG4920 Predicted membrane protein [Function unknown]
Probab=63.36 E-value=5.3 Score=39.18 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=27.4
Q ss_pred HHHHHhhhhhhhhhhccch-------hhHHHHHHHHHHHHHHHH
Q 016220 71 AITFHLCRGTYEYEKKFYN-------DHLESLQVMEKNYITMAT 107 (393)
Q Consensus 71 rqElqr~R~a~EyEKK~~~-------e~~Eq~q~MEKnlisMar 107 (393)
-|||.++|.-+| ||+++- .+-||.++|-+|...|-.
T Consensus 63 ~~eI~~aR~LyE-EK~a~eL~~kDee~l~E~~~~~~~~f~~m~~ 105 (249)
T COG4920 63 AQEISRARPLYE-EKEANELLEKDEELLNEYKRFARASFMPMLT 105 (249)
T ss_pred HHHHhhcchhHh-hhhhHHHHHhhHHHHHHHHHHHHHhccHHHH
Confidence 379999999999 887763 344778888888777754
No 234
>PLN02943 aminoacyl-tRNA ligase
Probab=63.33 E-value=18 Score=41.26 Aligned_cols=31 Identities=3% Similarity=0.054 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hhhccchhhHH
Q 016220 63 FLKIWSKNAITFHLCRGTYE-YEKKFYNDHLE 93 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E-yEKK~~~e~~E 93 (393)
+.+|++.|.+||+++...++ .|||.+.+...
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~ 918 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFV 918 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Confidence 46677777777777766665 56666666554
No 235
>PF15456 Uds1: Up-regulated During Septation
Probab=63.14 E-value=24 Score=31.33 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 88 YNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 88 ~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..+.-|++...++.+..++.|+++|...+.
T Consensus 76 ~~~~eeel~~~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 76 SLKAEEELAESDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777765543
No 236
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.05 E-value=55 Score=29.82 Aligned_cols=19 Identities=0% Similarity=-0.171 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
|++||+.|..|+++++.-+
T Consensus 57 L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 57 LEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554433
No 237
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=62.85 E-value=9 Score=34.86 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=19.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 49 YFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 49 ~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
.+|+.-|.++|.-+.++-|..|++|+..++ +..+.|.+..++.+|.+
T Consensus 8 ~~le~~F~~~Rd~lY~e~l~~L~~el~~l~------~~t~pe~l~~l~~l~~~ 54 (205)
T PF08598_consen 8 AKLEKQFAELRDQLYRERLAQLQQELEQLQ------EGTHPEYLRRLQDLEER 54 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHH
Confidence 356666777777777777777777666665 24445555554444443
No 238
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.37 E-value=24 Score=39.17 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh----hhhccchhhHH-------HHHHHH----HHHHHHHHHHHHHHHHHhcC
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYE----YEKKFYNDHLE-------SLQVME----KNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~E----yEKK~~~e~~E-------q~q~ME----KnlisMarEvEKLRaElana 119 (393)
+|.-|.+|.|.+|+||....-||- --||.+.+-.| ..-+-| ..+..|-.|+.|||.||+|.
T Consensus 51 q~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~ 126 (772)
T KOG0999|consen 51 QLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNV 126 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777877766554442 12333332222 222233 45667888999999999874
No 239
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=62.37 E-value=8.4 Score=37.73 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 016220 97 VMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElana 119 (393)
++..-+..|-+|+.|||.-+.-.
T Consensus 233 ~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 233 ALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445566777777666543
No 240
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.25 E-value=38 Score=38.63 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=25.6
Q ss_pred chhHHHHHHHHhH-----HHHHHHHHHHHHHHHHHhhhhhhh
Q 016220 46 PQYYFLHLAFQHC-----YCAIFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 46 ~~~~~~~~~~~~~-----~~~~l~~Eid~lrqElqr~R~a~E 82 (393)
+|+.+|+.-.|.+ |.+-|+..||++++|-+|+|..|.
T Consensus 438 ~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 438 SLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555443 233478899999999999998874
No 241
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=62.18 E-value=15 Score=27.44 Aligned_cols=25 Identities=4% Similarity=-0.269 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhh
Q 016220 52 HLAFQHCYCAIFLKIWSKNAITFHLC 77 (393)
Q Consensus 52 ~~~~~~~~~~~l~~Eid~lrqElqr~ 77 (393)
+.+.+||+|+ -.+.||.++|||+|.
T Consensus 14 ~EvrkEl~K~-K~EIIeA~~~eL~r~ 38 (40)
T PF08776_consen 14 EEVRKELQKV-KEEIIEAIRQELSRR 38 (40)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 3344444432 134567778887763
No 242
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=62.10 E-value=15 Score=34.53 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
...+|+.|..|+.++|+.+--||..+- - +.+..||.||+.||
T Consensus 180 ~~~~i~~L~kei~~L~~~~~kEkq~nr-------k-----veln~elk~l~~eL 221 (221)
T PF14335_consen 180 RLEQIEKLEKEIAKLKKKIKKEKQFNR-------K-----VELNTELKKLKKEL 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHH-------H-----HHHHHHHHHHHhcC
Confidence 466677777777777776666665431 1 23455666666664
No 243
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=62.09 E-value=47 Score=23.66 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 91 HLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 91 ~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+-|.+..+|.|+.....-|++-..+|.+
T Consensus 32 Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 32 QGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788899999999888888888765
No 244
>PLN02381 valyl-tRNA synthetase
Probab=62.05 E-value=25 Score=40.74 Aligned_cols=54 Identities=11% Similarity=-0.009 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhh---hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 62 IFLKIWSKNAITFHLCRGTYE---YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~E---yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-|..||+.|++||.++..-+. |+.|+-.+.+|+.+.--+ ..-.|+++|+..|++
T Consensus 1001 rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~---~~~~~l~~l~~~l~~ 1057 (1066)
T PLN02381 1001 KLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLT---KLLQELEFFEKESKR 1057 (1066)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 377888888888888776664 455666666665554433 444466666666654
No 245
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=62.02 E-value=31 Score=39.15 Aligned_cols=73 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYN--DHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~--e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
|--+|++++|| .-.|+.|+.+|+.||+-.=--=|+-.|--+ -+++.+..+-|..+.-..=|.||||.+..+++
T Consensus 414 lEkKvqa~~kE--RDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~et 488 (961)
T KOG4673|consen 414 LEKKVQALTKE--RDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAET 488 (961)
T ss_pred HHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
No 246
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.98 E-value=41 Score=28.11 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=49.3
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 49 YFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 49 ~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
.+|+...+.++... |...|++|+.|+..+..+. |-++.....++-+-+.+++-.+++.++.|..+|.+..
T Consensus 10 ~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W--~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a 81 (97)
T COG4842 10 EEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAW--EGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAA 81 (97)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544433 6777888888888888744 5566666777777888888888888888888876643
No 247
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.88 E-value=40 Score=27.16 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 94 SLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaElan 118 (393)
|++.-=.+...+..|+|-|+.||..
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666777777777653
No 248
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=61.86 E-value=36 Score=25.24 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+|+.|.+-+++++..|.-=...=.++=+.+..||.|+......|++-..+|.++.
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444332222335667778888999888888888888887653
No 249
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=61.84 E-value=14 Score=39.70 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=40.9
Q ss_pred eccchhhhHHhhhhhhcc-ccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccchhhHHHHH
Q 016220 19 CTLDFLFRQVYSKALHFG-HPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYE-YEKKFYNDHLESLQ 96 (393)
Q Consensus 19 ~~~d~~~~~~~~k~~h~~-h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~E-yEKK~~~e~~Eq~q 96 (393)
-++++-..+|.....+-. ..|+.+. ....|++.+.+++ ..|+++.+.|++++...-.+++ .=+|.....+.|+.
T Consensus 394 ~k~~l~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~~-~~l~~~~~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~ 469 (542)
T PF10079_consen 394 EKLGLSVEDVFEDGEELLKERWLEEQ---DPSEIEDDFEEEK-EQLEAQFEPLKEKAAKIDPTLEGLVEKNESKILKQLD 469 (542)
T ss_pred HHcCCCHHHHhhccHHHHHHHHHHhc---ccccHHHHHHHHH-HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 344555555553222222 3355444 2356677777754 3567777777777776665554 22333333444444
Q ss_pred HHHHHH
Q 016220 97 VMEKNY 102 (393)
Q Consensus 97 ~MEKnl 102 (393)
-|||.+
T Consensus 470 ~Le~k~ 475 (542)
T PF10079_consen 470 YLEKKL 475 (542)
T ss_pred HHHHHH
Confidence 444443
No 250
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=61.84 E-value=17 Score=38.54 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 016220 153 DGYGVPQGHGPPPSATT 169 (393)
Q Consensus 153 DgYg~~q~~~~~~~~~~ 169 (393)
+++|..++..+.|+.|.
T Consensus 290 ~~~~~~~G~l~~PV~G~ 306 (420)
T COG4942 290 GGFGALRGQLAWPVTGR 306 (420)
T ss_pred cccccccCCcCCCCCCc
Confidence 57888888888877654
No 251
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=61.74 E-value=43 Score=26.35 Aligned_cols=53 Identities=6% Similarity=0.085 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|+.+|+.++.|||.+=-. ==+..++-.+.+..||++|..|-..|.+|...+.+
T Consensus 31 L~~~i~~~~~eLr~~V~~---nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~ 83 (87)
T PF08700_consen 31 LRQEIEEKDEELRKLVYE---NYRDFIEASDEISSMENDLSELRNLLSELQQSIQS 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666543210 01223445566677777777777777777766654
No 252
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=61.72 E-value=39 Score=36.11 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=53.8
Q ss_pred cccCCCchhHHHHHHHHhHHHHH--------------------HHHHHHHHHHHHHhhhhhhhhhhcc--------chhh
Q 016220 40 ICESSSPQYYFLHLAFQHCYCAI--------------------FLKIWSKNAITFHLCRGTYEYEKKF--------YNDH 91 (393)
Q Consensus 40 ~~e~~~~~~~~~~~~~~~~~~~~--------------------l~~Eid~lrqElqr~R~a~EyEKK~--------~~e~ 91 (393)
+.|....+...++.++++.++.. |.+|++.+.+|.+---+-+++=+.. +...
T Consensus 105 ~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e 184 (447)
T KOG2751|consen 105 DGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKE 184 (447)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 33444445556666666655443 4778888888876655554442222 3335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 92 LESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
+|++..=|++|+..-.|+||=+++|++...
T Consensus 185 ~~~l~~eE~~L~q~lk~le~~~~~l~~~l~ 214 (447)
T KOG2751|consen 185 LKNLKEEEERLLQQLEELEKEEAELDHQLK 214 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888999999999999999887543
No 253
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=61.69 E-value=48 Score=30.26 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
+..+++.+.++|++.|..++-=+.......+.++.++..|-.+-+-+++++.++
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~ 186 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF 186 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777776653333322223344444444444444444444433
No 254
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.66 E-value=12 Score=42.02 Aligned_cols=20 Identities=25% Similarity=0.198 Sum_probs=9.9
Q ss_pred eeeeeeeeeccchhhhHHhh
Q 016220 11 IRCTLIFTCTLDFLFRQVYS 30 (393)
Q Consensus 11 ~~~~~~~~~~~d~~~~~~~~ 30 (393)
+..+|.+|+..++--.+|..
T Consensus 542 ~s~tLdwIls~~~SLqDv~s 561 (769)
T PF05911_consen 542 FSLTLDWILSNCFSLQDVSS 561 (769)
T ss_pred HHHHHHHHHHccchHHHHHH
Confidence 44455555555554444433
No 255
>PLN02320 seryl-tRNA synthetase
Probab=61.63 E-value=39 Score=36.48 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKF---YNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~---~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|+.|+|.||.|....-..|-- |+. ..++.++++.+.+.|..+-.+++++..||
T Consensus 105 ~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l 160 (502)
T PLN02320 105 LQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDEL 160 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888777777653 222 22455555666566666655555544443
No 256
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=61.42 E-value=25 Score=38.74 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred eeeeeeeeccchhhhHHhhhhhhcccc--------ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh----
Q 016220 12 RCTLIFTCTLDFLFRQVYSKALHFGHP--------WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRG---- 79 (393)
Q Consensus 12 ~~~~~~~~~~d~~~~~~~~k~~h~~h~--------l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~---- 79 (393)
|.|||-.|-=+-.---.-.--|-|+|+ |+.|--.+-..+=.+=.+..+...++.+++.++-||.+.|.
T Consensus 301 RTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~ 380 (607)
T KOG0240|consen 301 RTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEV 380 (607)
T ss_pred ceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcc
Q ss_pred ------hhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 80 ------TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 80 ------a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.++.++|..+.+.|+...+++++.+.-.|.++|-.++.
T Consensus 381 ~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~ 424 (607)
T KOG0240|consen 381 KEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIE 424 (607)
T ss_pred cchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHH
No 257
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.34 E-value=38 Score=30.88 Aligned_cols=42 Identities=10% Similarity=-0.107 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYIT 104 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlis 104 (393)
|.+||+.++.+...+-..-|--|+--..+-+++.+|-+++-.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~ 70 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQ 70 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333344444443333333
No 258
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=61.21 E-value=23 Score=32.83 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYI----------TMATEVEKLRAEL 116 (393)
Q Consensus 93 Eq~q~MEKnli----------sMarEvEKLRaEl 116 (393)
|+.+.||+.|- .||||.-|.|.||
T Consensus 130 e~~~~~~~~le~~k~rWg~~r~~ARedR~kRkel 163 (164)
T PF12824_consen 130 EKKKEMEARLEAIKSRWGPRRRIAREDRQKRKEL 163 (164)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 66666666655 7889998998886
No 259
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.08 E-value=4 Score=40.73 Aligned_cols=59 Identities=15% Similarity=-0.009 Sum_probs=26.9
Q ss_pred chhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYIT 104 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlis 104 (393)
++..+|+.+.++|.++. ++.+|+.|..+|+.++..++--.+-..++-++.+.++..|..
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44444555544444332 344455555555555555444333333444444444444443
No 260
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=60.82 E-value=26 Score=34.50 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElanae 120 (393)
+.++..+..+.+|-++||..|.-.+
T Consensus 87 ~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 87 QQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3333344448899999999876543
No 261
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.71 E-value=14 Score=32.39 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 016220 103 ITMATEVEKLRAELMNA 119 (393)
Q Consensus 103 isMarEvEKLRaElana 119 (393)
..+-.|-++||..|...
T Consensus 39 ~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 39 TALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566788888888754
No 262
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=60.14 E-value=34 Score=26.19 Aligned_cols=49 Identities=6% Similarity=-0.130 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarE 108 (393)
++-..-|.++|..|+.||..+|..--- +..++..+.+.+-|++--|-..
T Consensus 5 ~ls~~eL~~~l~~l~~elf~Lr~q~~~---~~~~~~~~~~~~Rr~IARi~Ti 53 (57)
T cd00427 5 EKSDEELQEKLDELKKELFNLRFQKAT---GQLENPHRIRKVRKDIARIKTV 53 (57)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCcCcHHHHHHHHHHHHHHHH
Confidence 344556899999999999999933222 2377778888888776555443
No 263
>PF14182 YgaB: YgaB-like protein
Probab=60.14 E-value=27 Score=29.43 Aligned_cols=50 Identities=4% Similarity=-0.221 Sum_probs=24.4
Q ss_pred HHhhhhhhccccccccCCCchhHHHHHH---HHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 016220 27 QVYSKALHFGHPWICESSSPQYYFLHLA---FQHCYCAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 27 ~~~~k~~h~~h~l~~e~~~~~~~~~~~~---~~~~~~~~l~~Eid~lrqElqr~R~a~ 81 (393)
.+|+.-+-.|-.|. .|+++|++. .++|++..=.++++.+|+||.+.|..+
T Consensus 4 ~LV~eQm~tMD~LL-----~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~L 56 (79)
T PF14182_consen 4 KLVSEQMKTMDKLL-----FLQSELERCQEIEKELKELEREAELHSIQEEISQMKKEL 56 (79)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444444443332 244455442 345555554555666666665555444
No 264
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.86 E-value=58 Score=33.64 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKL 112 (393)
+.++..+..|..+-.++++|
T Consensus 379 ~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 379 EELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 265
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=59.76 E-value=81 Score=26.20 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=31.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 49 YFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 49 ~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..|..++.++-......-.+...++|...|.. +-++++.++..+-.+..+++.|.+|+.
T Consensus 61 ~~l~~~~~~~~~~~~~~a~~~a~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~e~~ 119 (120)
T PF11740_consen 61 EALQDALAELMARLWEAAQEEAEEELEAARAE----------LEQERAAAEAELAEAEAQAEELEAELA 119 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444334333344444444444433 234455666666677777777777764
No 266
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.67 E-value=14 Score=43.00 Aligned_cols=54 Identities=15% Similarity=-0.015 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHhc
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM-------ATEVEKLRAELMN 118 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM-------arEvEKLRaElan 118 (393)
.+|+.|.-|+-.+++.+.-..+-..+.++++....+++... ..+.||+..|+.+
T Consensus 843 ~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 843 KQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 33344444444444444443333333444443333333322 3334555555444
No 267
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=59.54 E-value=19 Score=35.09 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=51.0
Q ss_pred cccccCCCchhHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHH----HH----HHHHH
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAIF-----LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQV----ME----KNYIT 104 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~l-----~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~----ME----Knlis 104 (393)
|-|.|-++.++.+++..+|-+.+..| +-|+|. +=|+..+.-|+-|-|-+.+.||--|+ |+ ||--.
T Consensus 71 mqisev~r~i~~~le~~lk~FH~ell~~LEkk~elD~--kyi~~s~KkYq~E~r~k~dsleK~~selkk~rrk~qkn~~e 148 (215)
T cd07644 71 IQMSETQRKLSADLEVVFQTFHVDLLQHMDKNTKLDM--QFIEDSRRVYELEYRHRAANLEKCMSELWRMERQRDRNVRE 148 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCchh
Confidence 34666666777777788777776665 223332 23445666678888888888876544 43 46667
Q ss_pred HHHHHHHHHHHHhc
Q 016220 105 MATEVEKLRAELMN 118 (393)
Q Consensus 105 MarEvEKLRaElan 118 (393)
|...||.|+.|+.+
T Consensus 149 ~kE~~~~lq~~~~~ 162 (215)
T cd07644 149 MKENVNRLRQSMQA 162 (215)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777777654
No 268
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=59.45 E-value=12 Score=31.63 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
|..||+.||+|++.++.-+
T Consensus 76 LLd~i~~Lr~el~~L~~~l 94 (101)
T PRK10265 76 LLDEIAHLKQENRLLRQRL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6899999999999887643
No 269
>PLN03086 PRLI-interacting factor K; Provisional
Probab=59.44 E-value=29 Score=38.05 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=29.3
Q ss_pred HHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 71 AITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 71 rqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|+--+++|.-+|-|+|++.|-..|+.++|+ +.|.|-||.++|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 60 (567)
T PLN03086 17 RERKQRAKLKLERERKAKEEAAKQREAIEA--AQRSRRLDAIEAQI 60 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 344567777788888888888777777775 45555555554443
No 270
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.41 E-value=33 Score=35.43 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhhhh------hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGT------YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a------~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++.+|+.|++.|+.+... ....++......+..+.+.+.|-.|-.++++|+.+|.+.
T Consensus 346 ~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 346 LKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678888888888777662 334445555666777788888888888999999988875
No 271
>PRK11519 tyrosine kinase; Provisional
Probab=59.36 E-value=25 Score=38.47 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016220 95 LQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLR 113 (393)
+...|+.|..+-||+|-.+
T Consensus 365 lp~~e~~~~~L~Re~~~~~ 383 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQ 383 (719)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3344555555556555443
No 272
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=59.20 E-value=36 Score=36.64 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred chhhhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHH------------------HHHHHHHHHHHHH--------
Q 016220 22 DFLFRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAI------------------FLKIWSKNAITFH-------- 75 (393)
Q Consensus 22 d~~~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~------------------l~~Eid~lrqElq-------- 75 (393)
+|+-.+.++ |--.|-|..+... -.-+|-...=|||.+. |++||+.||--||
T Consensus 171 e~~~ee~~s--l~~e~KlLk~~~e-n~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s 247 (488)
T PF06548_consen 171 EFIDEEYVS--LMHEHKLLKEKYE-NHPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMS 247 (488)
T ss_pred HHhhhHhhh--hhhHhhhhhhhcc-CchHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccc
Q ss_pred hhh-------hhhhhhh--------ccchhhHH----HHHHHHHHHHHHHHHH-----------HHHHHHH
Q 016220 76 LCR-------GTYEYEK--------KFYNDHLE----SLQVMEKNYITMATEV-----------EKLRAEL 116 (393)
Q Consensus 76 r~R-------~a~EyEK--------K~~~e~~E----q~q~MEKnlisMarEv-----------EKLRaEl 116 (393)
-.| ..|-.++ +..-+.+| .--.||.+.|++.-|+ |||+.||
T Consensus 248 ~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL 318 (488)
T PF06548_consen 248 TDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMEL 318 (488)
T ss_pred cccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 273
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.19 E-value=67 Score=28.38 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~Ey 83 (393)
..+++.+.+.+.+.|+.++-
T Consensus 116 ~~~~~~~~~~l~~k~~~~~k 135 (218)
T cd07596 116 LLTLQSLKKDLASKKAQLEK 135 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444433
No 274
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=58.98 E-value=20 Score=38.96 Aligned_cols=74 Identities=20% Similarity=0.048 Sum_probs=36.4
Q ss_pred hHHhhhhhhccccccccCCC--------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHH
Q 016220 26 RQVYSKALHFGHPWICESSS--------PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQV 97 (393)
Q Consensus 26 ~~~~~k~~h~~h~l~~e~~~--------~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ 97 (393)
.--++|||-+|-.-|.||.. .++-++++|..+|||.- +|++. +|.||.--++.-.--.+
T Consensus 162 DhkqdkElaaiIgaidenKqeAVakEdfdlAKkaklAiaDLkKsg--eelee-----------lEndKgcAVadEDfdlA 228 (666)
T KOG4825|consen 162 DHKQDKELAAIIGAIDENKQEAVAKEDFDLAKKAKLAIADLKKSG--EELEE-----------LENDKGCAVADEDFDLA 228 (666)
T ss_pred ccccCHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHHH-----------HhhcccccccchhhhHH
Confidence 33455677666555555521 23444455555555432 22222 34444433333222223
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016220 98 MEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEla 117 (393)
-|| -.|||.||+||.
T Consensus 229 kdk-----kdeiealRaeil 243 (666)
T KOG4825|consen 229 KDK-----KDEIEALRAEIL 243 (666)
T ss_pred HHH-----HHHHHHHHHHHH
Confidence 333 368999999964
No 275
>PLN02769 Probable galacturonosyltransferase
Probab=58.94 E-value=11 Score=41.75 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=5.5
Q ss_pred HHHHHHHhcCCC
Q 016220 110 EKLRAELMNAPN 121 (393)
Q Consensus 110 EKLRaElanae~ 121 (393)
.|||+-|..+|.
T Consensus 263 ~klr~~l~~~E~ 274 (629)
T PLN02769 263 RKLRQILDMTED 274 (629)
T ss_pred HHHHHHHHHHHH
Confidence 355554444443
No 276
>PLN02381 valyl-tRNA synthetase
Probab=58.83 E-value=23 Score=41.00 Aligned_cols=18 Identities=6% Similarity=-0.232 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~ 81 (393)
.+|++.|++||+++...+
T Consensus 996 ~~E~~rL~K~l~klekei 1013 (1066)
T PLN02381 996 EAELEKLRNKMDEIQKQQ 1013 (1066)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 277
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.60 E-value=12 Score=36.69 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=25.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 87 FYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 87 ~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.|.|+-|++..+++.+..+-+||++||++=.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888889999999999999843
No 278
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=58.51 E-value=29 Score=39.31 Aligned_cols=74 Identities=18% Similarity=0.049 Sum_probs=55.0
Q ss_pred hhHHHHHHHHhHHHHH--------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH--HHHHH--HHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAI--------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL--QVMEK--NYITMATEVEKLRA 114 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~--------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~--q~MEK--nlisMarEvEKLRa 114 (393)
+..+|+.--||+++.| ||.=||.|+-|+-.+=.+=+.|-|.++|.|||. |.+=. |.-.+-.--|.|++
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~ 726 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEA 726 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHH
Confidence 3567787888888877 688899999999888888889988999999873 22211 22334456789999
Q ss_pred HHhcCC
Q 016220 115 ELMNAP 120 (393)
Q Consensus 115 Elanae 120 (393)
||+-+.
T Consensus 727 e~~~~~ 732 (762)
T PLN03229 727 ELAAAR 732 (762)
T ss_pred HHHHhh
Confidence 997643
No 279
>smart00721 BAR BAR domain.
Probab=58.46 E-value=63 Score=29.24 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhh
Q 016220 64 LKIWSKNAITFHLC 77 (393)
Q Consensus 64 ~~Eid~lrqElqr~ 77 (393)
+.+.|..+..+..+
T Consensus 147 ~lDyD~~~~kl~~~ 160 (239)
T smart00721 147 LLDYDSARHKLKKA 160 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 280
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=58.38 E-value=55 Score=32.43 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
++++|+..+.+++.++..+
T Consensus 111 ~~~~l~~a~~~l~~a~~~~ 129 (370)
T PRK11578 111 LRAQRQQAEAELKLARVTL 129 (370)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 281
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=58.37 E-value=62 Score=31.48 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 016220 107 TEVEKLRAEL 116 (393)
Q Consensus 107 rEvEKLRaEl 116 (393)
.|+.+|+.||
T Consensus 88 eey~~Lk~~i 97 (230)
T PF10146_consen 88 EEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 282
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=58.33 E-value=44 Score=33.75 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=42.1
Q ss_pred hHHHHH-HHHHHHHHHHHHHhhhhhhhhhhccc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 57 HCYCAI-FLKIWSKNAITFHLCRGTYEYEKKFY--------NDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 57 ~~~~~~-l~~Eid~lrqElqr~R~a~EyEKK~~--------~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+|++.. +++||+.++-||+.++ .||.+. .+..+++|.|-.+|=.+.+|=++||+-|..
T Consensus 52 ~L~QIt~iQaeI~q~nlEielLk----leKeTADltH~~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqk 118 (277)
T PF15003_consen 52 RLRQITNIQAEIDQLNLEIELLK----LEKETADLTHPDYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQK 118 (277)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH----hhcchHhhhCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 344443 6777777777777654 344432 345678999999999999999999998864
No 283
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=58.33 E-value=52 Score=30.34 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLES----LQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq----~q~MEKnlisMarEvEKLRaElan 118 (393)
|..=|+.++.-|...+..| +|.+.|..+| ...|..++-++++|+|||=.+|..
T Consensus 61 ~~e~l~~~~~kl~et~~~L---~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 61 AEEALKQLKTKLEETAEKL---RKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHGG---GG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444 2233333333 235677899999999999999974
No 284
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=58.32 E-value=15 Score=38.16 Aligned_cols=85 Identities=20% Similarity=0.074 Sum_probs=54.9
Q ss_pred eeeeccchhhhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH
Q 016220 16 IFTCTLDFLFRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL 95 (393)
Q Consensus 16 ~~~~~~d~~~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~ 95 (393)
.-+..|.++-|||++--.||-- |-. +|+ .|+..+|+ ||..+.+--|.++.||.|+=. ..+ .
T Consensus 218 Vtt~RMqvlkrQv~SL~~HQ~K-LEa----EL~-q~Ee~hq~-kKrk~~estdsf~~eLKr~c~-------~kv-----e 278 (410)
T KOG4715|consen 218 VTTARMQVLKRQVQSLMVHQRK-LEA----ELL-QIEERHQE-KKRKFLESTDSFNNELKRLCG-------LKV-----E 278 (410)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHH----HHH-HHHHHHHH-HHHHHHhccHHHHHHHHHhcC-------Ccc-----c
Confidence 3567788899999986656531 111 122 56777777 455556667888888887632 112 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElana 119 (393)
-.|||=...|++-.|++|.-+...
T Consensus 279 vd~eK~~~~i~q~eeq~rkr~eE~ 302 (410)
T KOG4715|consen 279 VDMEKMAAEIAQAEEQARKRQEER 302 (410)
T ss_pred ccHHHHHHHHHHHHHHHHHhHhHH
Confidence 357777788888888888765543
No 285
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=58.25 E-value=61 Score=30.29 Aligned_cols=50 Identities=24% Similarity=0.161 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 68 SKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 68 d~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
..|--||+++|..-|-|+|.-+ -|+|-+.-+|--+-+|-+.||-.|..+|
T Consensus 102 ~aLas~L~~Lr~q~e~e~keaa---~qL~~~~a~L~~v~~ERD~Lr~kLlqae 151 (152)
T PF15186_consen 102 WALASELKRLREQREMERKEAA---FQLQLTQAALQEVQKERDLLRWKLLQAE 151 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566789999999999998555 4566677799999999999999998765
No 286
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.14 E-value=41 Score=37.41 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=25.1
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHH---HHHHHHHHHHhcCC
Q 016220 77 CRGTYEYEKKFYNDHLESLQVMEKNYITMA---TEVEKLRAELMNAP 120 (393)
Q Consensus 77 ~R~a~EyEKK~~~e~~Eq~q~MEKnlisMa---rEvEKLRaElanae 120 (393)
+...++--++...+++.++...++||+.-- .|.-||+.||....
T Consensus 267 ~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 267 LTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555556666666777777655 34446666666543
No 287
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=58.10 E-value=25 Score=37.26 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=47.3
Q ss_pred hHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 016220 26 RQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM 105 (393)
Q Consensus 26 ~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM 105 (393)
-+++.|+|-.-++|++=++++-....+.|.+|+ ..+|+.|.+||..+...+| =+|.|-.|=+..
T Consensus 323 a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~-----~~~i~~LDrEI~~Lk~E~~-----------lRk~l~~nT~~~ 386 (418)
T TIGR03755 323 ADTLEKALLMRRMLLTGLQEPNVAANKPAQQEV-----DKAIDKLDREINNLKTELE-----------LRKELASNTALT 386 (418)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccCHHHHHHH-----HHHHHHHHHHHHHHHHHHH-----------HHHHHHhccHHH
Confidence 356778887778899988887777667777664 4455666666665544333 345666666666
Q ss_pred HHHHHHHH
Q 016220 106 ATEVEKLR 113 (393)
Q Consensus 106 arEvEKLR 113 (393)
.-|.+.-|
T Consensus 387 il~r~~~r 394 (418)
T TIGR03755 387 ILQRHHAR 394 (418)
T ss_pred HHHHHHhH
Confidence 66666665
No 288
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=57.90 E-value=36 Score=27.52 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016220 97 VMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaEl 116 (393)
.|+.+|-.+-+|+++||..|
T Consensus 69 ~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 69 ELEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35566666666777777665
No 289
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=57.88 E-value=38 Score=25.81 Aligned_cols=46 Identities=7% Similarity=-0.106 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT 107 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar 107 (393)
-..-|.++|..+++||..+|.. . .-+..++..+.+.+-|++--|-.
T Consensus 6 s~~EL~~~l~~lr~eLf~Lr~~--~-~~~~~~~~~~i~~~Rk~IARi~T 51 (55)
T TIGR00012 6 SKEELAKKLDELKKELFELRFQ--K-ATGQLAKPHRIRQVRRDIARLLT 51 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--H-HhCCcccchHHHHHHHHHHHHHH
Confidence 3456899999999999999932 2 34455677788888887755543
No 290
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.86 E-value=34 Score=35.04 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 016220 97 VMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElan 118 (393)
.+-|-|..|+.|=.+|++.|..
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3556677777777777777753
No 291
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=57.70 E-value=28 Score=35.75 Aligned_cols=21 Identities=0% Similarity=-0.233 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey 83 (393)
++.+|+.|+.+|..++..+.-
T Consensus 241 ~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 241 IQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 566677777777777776653
No 292
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=57.42 E-value=65 Score=31.17 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=34.8
Q ss_pred HhhhhhhhhhhccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 016220 75 HLCRGTYEYEKKFYNDHLESLQVMEKNYIT-MATEVEKLRAELM 117 (393)
Q Consensus 75 qr~R~a~EyEKK~~~e~~Eq~q~MEKnlis-MarEvEKLRaEla 117 (393)
+.+|.|+=.|+..+--+++.....=++.+. |..+++.|..-|.
T Consensus 174 ~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~ 217 (223)
T cd07605 174 QGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLP 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467888888888888888888877777777 8888888887765
No 293
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.40 E-value=47 Score=34.23 Aligned_cols=55 Identities=9% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|-..++.|.+|++.++..+.--++.+.+.-+....|-+-|-.+..|+|+...|+.
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777777766666666666666666666666666665
No 294
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=57.18 E-value=47 Score=34.00 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|+++|+.|.+||..+...+|--+ ..--|++..+++|.+.-+|+++++.-++
T Consensus 247 l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777665544 3445666677777777777777766544
No 295
>KOG4133 consensus tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
Probab=57.08 E-value=10 Score=38.09 Aligned_cols=90 Identities=17% Similarity=0.006 Sum_probs=53.1
Q ss_pred cchhhhHHhhhhhhccccc-------cccCCCchhHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhhhhhhhccc
Q 016220 21 LDFLFRQVYSKALHFGHPW-------ICESSSPQYYFLHLAFQHCYCAIFLKI-----WSKNAITFHLCRGTYEYEKKFY 88 (393)
Q Consensus 21 ~d~~~~~~~~k~~h~~h~l-------~~e~~~~~~~~~~~~~~~~~~~~l~~E-----id~lrqElqr~R~a~EyEKK~~ 88 (393)
.|+.+=++..|-+||+-.+ -+-+. -|..-|++--.| +-|+.| +-..|++..|+--++|.|+|..
T Consensus 14 ~~~~av~~LRk~~gI~G~~vGtlpt~pqqn~-~lgLPl~Lm~eE---a~lL~e~gia~v~~~r~d~~h~~e~~~~~rk~~ 89 (290)
T KOG4133|consen 14 FDAEAVQALRKRLGIGGRLVGTLPTGPQQNV-FLGLPLELMKEE---ARLLAEIGIALVVDPRPDSRHAAEARETRRKEL 89 (290)
T ss_pred ecHHHHHHHHHhcCccceeecccCCCCCccc-cccCchhhCHHH---HHHHHHcChhheecCCcchhhHhhhhhhhhHHH
Confidence 4777788888889998552 22232 244444554444 333333 2344566666666666666666
Q ss_pred hhhHHH------------------------HHHHHHHHHHHHHHHHHHHH
Q 016220 89 NDHLES------------------------LQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 89 ~e~~Eq------------------------~q~MEKnlisMarEvEKLRa 114 (393)
.|+++. .++||||+-.|+.+.|||-+
T Consensus 90 leKite~~a~~kq~le~q~~a~k~q~i~~~kk~~e~~~~~~~k~g~~~~k 139 (290)
T KOG4133|consen 90 LEKITEGQADKKQKLEQQSGASKDQEIASSKKAKEKETSDGQKSGEQLEK 139 (290)
T ss_pred HHHHHhhHHHHHHHHHHHhhcchhHHHHHHHhhhhhhhhhHHHHhhhcCC
Confidence 655554 34677777777777777643
No 296
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.87 E-value=33 Score=38.39 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCC
Q 016220 145 PVGQNAYEDGYG 156 (393)
Q Consensus 145 ~~g~~~Y~DgYg 156 (393)
.+|...+-.++|
T Consensus 626 ~~Gd~V~v~~~~ 637 (771)
T TIGR01069 626 KIGDKVRIRYFG 637 (771)
T ss_pred CCCCEEEEccCC
Confidence 344555555555
No 297
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=56.87 E-value=37 Score=33.56 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
++.|+.+++.|...-....-+-..=.+++++++..-++|-.|.+|+.+|..=|.|...
T Consensus 12 ~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~ 69 (304)
T PF02646_consen 12 KEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKT 69 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCc
Confidence 4444444444443333322222223345666677777789999999999999986433
No 298
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=56.74 E-value=79 Score=30.75 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
++++++.++.+++.+...++..+|...+++|+.+.+=+++..|...--.+-.-|+
T Consensus 249 ~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~Ia 303 (306)
T PF04888_consen 249 LQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQAQIA 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888888888888889999999999999999998888888877666665554
No 299
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.73 E-value=40 Score=34.67 Aligned_cols=20 Identities=5% Similarity=0.267 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016220 98 MEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEla 117 (393)
.+..|.....+++.++++|+
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 300
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.73 E-value=17 Score=39.53 Aligned_cols=26 Identities=0% Similarity=-0.250 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFY 88 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~ 88 (393)
|..+|+.|++|+..+..+++-=|+.+
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67788888888888776666555443
No 301
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=56.58 E-value=73 Score=29.28 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
++||-.|+|--.-+. ---|-..-++.-++|...+||.=.-+.+|||||+.|++-
T Consensus 46 reEVvrlKQrRRTLK-NRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLK-NRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777766422221 123445556777888888888888888888888888764
No 302
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=56.57 E-value=95 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.++.+-++.|.+||..+-+-|.+|++.|+.
T Consensus 53 ~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 53 ARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778889999999999999999999975
No 303
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=56.50 E-value=77 Score=26.52 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=35.1
Q ss_pred HHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHH
Q 016220 51 LHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYIT 104 (393)
Q Consensus 51 ~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlis 104 (393)
|+.+++++.... +..|+-.|.+.+.|+=+-+.-+++-+++.+-++.+|...+..
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~ 63 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKK 63 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 566666666555 367777888888887777777777666665555554443333
No 304
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=56.10 E-value=42 Score=36.35 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=52.6
Q ss_pred hhHHHHHHHHhHHHHH---------HHHHHHHHHHHHHhhhhhh-------hhhhccch----hhHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAI---------FLKIWSKNAITFHLCRGTY-------EYEKKFYN----DHLESLQVMEKNYITMA 106 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~---------l~~Eid~lrqElqr~R~a~-------EyEKK~~~----e~~Eq~q~MEKnlisMa 106 (393)
+-.+|....|.|-|-+ +.+.||.|+.||+.-|+.. --|+.+-+ -+..+++.+++-+-.--
T Consensus 480 ~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~ 559 (583)
T KOG3809|consen 480 KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTK 559 (583)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 4556666777766655 3788999999999988743 23343332 24556777777777777
Q ss_pred HHHHHHHHHHhcCCCC
Q 016220 107 TEVEKLRAELMNAPNV 122 (393)
Q Consensus 107 rEvEKLRaElanae~~ 122 (393)
.||-+.|+-|.|-+.|
T Consensus 560 e~i~~~r~~IL~Ne~r 575 (583)
T KOG3809|consen 560 EEISKARGRILNNEKR 575 (583)
T ss_pred HHHHHHHHHHhhhHHH
Confidence 7888889988876543
No 305
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=55.94 E-value=66 Score=23.19 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 91 HLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 91 ~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+-|++..++.|+..+..-|++=..+|.+
T Consensus 38 Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 38 QGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 4567788899999888888887777754
No 306
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=55.85 E-value=1.1e+02 Score=28.59 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=38.5
Q ss_pred HhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 016220 75 HLCRGTYEYEKKFYNDHLESLQVMEKNYITMATE-VEKLRAELM 117 (393)
Q Consensus 75 qr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarE-vEKLRaEla 117 (393)
+.+|.++..|++.+--++|.....=+.++.|-.| ++.|..-|.
T Consensus 163 ~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~ 206 (219)
T PF08397_consen 163 QSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLD 206 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4679999999999999999999999999999999 888877654
No 307
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=55.80 E-value=62 Score=30.56 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 95 LQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLRaElana 119 (393)
++++++.+..|-.++++|-.++.|+
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554
No 308
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=55.78 E-value=17 Score=37.98 Aligned_cols=31 Identities=6% Similarity=-0.155 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHH---------HHHHHHHHHHHHHhhhhh
Q 016220 50 FLHLAFQHCYCAI---------FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 50 ~~~~~~~~~~~~~---------l~~Eid~lrqElqr~R~a 80 (393)
+|....+||+++| |..+++++=|+|.+.|.+
T Consensus 345 ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~e 384 (389)
T PF05633_consen 345 EVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTE 384 (389)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHH
Confidence 4666666666666 344444555555555543
No 309
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=55.75 E-value=63 Score=34.46 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=34.3
Q ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 80 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 80 a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-+.-+=+...+++|++..|-.++-.||+|+-.|-+=|.+
T Consensus 151 ~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~ 189 (448)
T COG1322 151 RIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKG 189 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355566778899999999999999999999999999998
No 310
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=55.60 E-value=20 Score=42.16 Aligned_cols=104 Identities=16% Similarity=0.054 Sum_probs=66.8
Q ss_pred eeeeeeeeeccchhhhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchh
Q 016220 11 IRCTLIFTCTLDFLFRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYND 90 (393)
Q Consensus 11 ~~~~~~~~~~~d~~~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e 90 (393)
|-+..+-++++|+++-|.++|---.--||.----.+|--+|+...|.|-+.+|..-...|-|= -..+||-|+|.--.
T Consensus 1206 issf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqm---e~~tf~~q~~eiq~ 1282 (1439)
T PF12252_consen 1206 ISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQM---EVKTFEEQEKEIQQ 1282 (1439)
T ss_pred HHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhhHHHHH
Confidence 334455677788888888774322223343322234556667777777666665555544431 16789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 91 HLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 91 ~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+++++..+||.|..- .-.+|+|+||.+
T Consensus 1283 n~~ll~~L~~tlD~S-~~a~Kqk~di~k 1309 (1439)
T PF12252_consen 1283 NLQLLDKLEKTLDDS-DTAQKQKEDIVK 1309 (1439)
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHH
Confidence 999999999998763 235667766654
No 311
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.57 E-value=31 Score=37.82 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 79 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 79 ~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+.++-|.+.....+.++...|+.|..+-||+|..|.-
T Consensus 349 ~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 349 QTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555666677777777777665543
No 312
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=55.48 E-value=1.2e+02 Score=25.25 Aligned_cols=80 Identities=18% Similarity=0.065 Sum_probs=36.2
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhh----hhhhc--cchhhHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTY----EYEKK--FYNDHLESLQVMEKNYITMAT 107 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~----EyEKK--~~~e~~Eq~q~MEKnlisMar 107 (393)
.+.+|+......+..+-+..+.+. ....|..+++|.+..+..- +-++. ..--.-|=.+.+++..-.+.+
T Consensus 27 ~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~ 106 (132)
T PF00430_consen 27 FLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQ 106 (132)
T ss_dssp HCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567887766666666655544333 2344444444444333221 11111 111112223445555566666
Q ss_pred HHHHHHHHHhc
Q 016220 108 EVEKLRAELMN 118 (393)
Q Consensus 108 EvEKLRaElan 118 (393)
|.++++.+|..
T Consensus 107 e~~~a~~~l~~ 117 (132)
T PF00430_consen 107 EKEKAKKELRQ 117 (132)
T ss_dssp HHHHHHHHHT-
T ss_pred HHHHHHHHHHH
Confidence 66666666643
No 313
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=55.41 E-value=45 Score=31.87 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLES-----LQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq-----~q~MEKnlisMarEvEKLRaElan 118 (393)
-.|++.++-|+...|+.++.+ +++..-| +..|-+.+..+-.||++|+.|+.+
T Consensus 74 ~~~a~~~Kse~~~~r~~L~l~---FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 74 NAEARNAKSELEMERSNLELS---FIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHHHHHHHhHHHHHHHHHhhH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356778888888888887773 3444333 445555556666666666666654
No 314
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=55.37 E-value=56 Score=37.09 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 49 YFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 49 ~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.+..+..++=.+.+|++++|.||.+|-+.=+.|+ ..-.|...|+.-+-.+.-||++|+-.+
T Consensus 327 lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~-------kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 327 LKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE-------KKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 315
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.18 E-value=32 Score=37.65 Aligned_cols=19 Identities=5% Similarity=-0.174 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~E 82 (393)
..||+.|+.++..+...++
T Consensus 348 ~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 348 EAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 316
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=55.14 E-value=77 Score=27.47 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=45.4
Q ss_pred cCCCchhHHHHHHHHhH----HHHH-HHHHHHHHHHHHHhhhhhh-hhhh--c---c------chhhHHHHHHHHHHHHH
Q 016220 42 ESSSPQYYFLHLAFQHC----YCAI-FLKIWSKNAITFHLCRGTY-EYEK--K---F------YNDHLESLQVMEKNYIT 104 (393)
Q Consensus 42 e~~~~~~~~~~~~~~~~----~~~~-l~~Eid~lrqElqr~R~a~-EyEK--K---~------~~e~~Eq~q~MEKnlis 104 (393)
|++++|.-++|.|=.|. ||.+ |-.|=+.|.+||++.|..+ +.+. + + ...+-+.++.+|..+-.
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~ 80 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINE 80 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 44556666777776662 2222 5667788999999999866 3331 1 1 13455667777766666
Q ss_pred HHHHHHHHHH
Q 016220 105 MATEVEKLRA 114 (393)
Q Consensus 105 MarEvEKLRa 114 (393)
+-+-|.||.-
T Consensus 81 Ls~kv~eLq~ 90 (96)
T PF11365_consen 81 LSGKVMELQY 90 (96)
T ss_pred HhhHHHHHhh
Confidence 6666766654
No 317
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.12 E-value=32 Score=26.34 Aligned_cols=14 Identities=7% Similarity=-0.289 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhh
Q 016220 64 LKIWSKNAITFHLC 77 (393)
Q Consensus 64 ~~Eid~lrqElqr~ 77 (393)
++|++.|++|++++
T Consensus 37 ~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 37 KKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 318
>smart00304 HAMP HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain.
Probab=55.11 E-value=31 Score=21.01 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016220 94 SLQVMEKNYITMATEVEK 111 (393)
Q Consensus 94 q~q~MEKnlisMarEvEK 111 (393)
..+.|...+..|..+++.
T Consensus 33 e~~~l~~~~~~~~~~~~~ 50 (53)
T smart00304 33 EIGELARAFNEMADRLEE 50 (53)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666544
No 319
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=54.96 E-value=95 Score=27.09 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
.++.|+.-++.+...|+-=|+.=.|-+|+.+.+-+-|
T Consensus 73 ~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L 109 (132)
T PF10392_consen 73 VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443333
No 320
>PLN03184 chloroplast Hsp70; Provisional
Probab=54.92 E-value=72 Score=34.99 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016220 97 VMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaEl 116 (393)
.+++.+..+..++.+|-..+
T Consensus 615 ~ik~~~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 615 KMKDAMAALNQEVMQIGQSL 634 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 321
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=54.89 E-value=74 Score=31.78 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhhhhhhhccchhhHHH--------HHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 69 KNAITFHLCRGTYEYEKKFYNDHLES--------LQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 69 ~lrqElqr~R~a~EyEKK~~~e~~Eq--------~q~MEKnlisMarEvEKLRaElana 119 (393)
.|-|-.+.++++++-=+..+...+++ ...||++|-.+.++|+.|-++|.|+
T Consensus 42 ~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~ 100 (258)
T PF15397_consen 42 KLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKT 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444555666555433344444444 3468899999999999999998875
No 322
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=54.89 E-value=51 Score=35.61 Aligned_cols=57 Identities=16% Similarity=-0.001 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM--------------ATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM--------------arEvEKLRaElana 119 (393)
+++||+.+++|+.++....+.......+.++.....++.+..+ ..++++|+..|.+.
T Consensus 227 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~ 297 (646)
T PRK05771 227 IEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKA 297 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHHHHHHh
Confidence 4555555555555554444333332333333333333333322 34667777777654
No 323
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.81 E-value=28 Score=26.67 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhhHHHHHHH
Q 016220 67 WSKNAITFHLCRGTYEYEKKFYNDHLESLQVM 98 (393)
Q Consensus 67 id~lrqElqr~R~a~EyEKK~~~e~~Eq~q~M 98 (393)
+..+++|++.+...++..++.+.++-++.+.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444443333333443344333
No 324
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=54.78 E-value=26 Score=37.98 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=17.6
Q ss_pred HHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 72 ITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 72 qElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.||..+|.-+|.||+-+. || --|||||..-|.
T Consensus 594 kel~kl~~dleeek~mr~-----------~l---emei~~lkka~~ 625 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRS-----------NL---EMEIEKLKKAVL 625 (627)
T ss_pred HHHHHHHHHHHHHHHHHh-----------hh---HhhHHHHHHHhh
Confidence 455566666666655332 22 237777776553
No 325
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=54.50 E-value=22 Score=41.57 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESL-QVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~-q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
+.|+-..+..++.++..+++=+|.=.+.-+|. +.|.+-+--|+.++|.|..|+++.+..
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~ 416 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ 416 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555554444444555555 677777778888888888888877664
No 326
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=54.41 E-value=15 Score=40.18 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM 105 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM 105 (393)
..|+-||..||||.++....+|.|.|++.+ +||||..|
T Consensus 619 yalkd~v~~lqqd~~kmkk~leeEqkaRrd-------Le~ll~k~ 656 (661)
T KOG2070|consen 619 YALKDEVSELQQDNKKMKKVLEEEQKARRD-------LEKLLRKM 656 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 347999999999999999999999998755 56666555
No 327
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=54.29 E-value=65 Score=31.93 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=43.7
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
+++.--....+.++.++......+ -..+.+.+.+|.|++|. ++++++.++.++.++.+|-++||
T Consensus 35 ~~~~~~~~~~s~~~~v~~~p~~~v~~~~~~~~~~~~~~~en~~Lk~-----------~l~~~~~~~~~~~~l~~EN~~Lr 103 (284)
T COG1792 35 IIRQVVGTVLSPVQSVVAAPFEFVDGVLEFLKSLKDLALENEELKK-----------ELAELEQLLEEVESLEEENKRLK 103 (284)
T ss_pred cceeeeccchhHHHHHHhhHHHHHHhHHHHHHHhHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433222 25566666666666653 45667777888889999999999
Q ss_pred HHHhcCCC
Q 016220 114 AELMNAPN 121 (393)
Q Consensus 114 aElanae~ 121 (393)
..|--.+.
T Consensus 104 ~lL~~~~~ 111 (284)
T COG1792 104 ELLDFKES 111 (284)
T ss_pred HHhCCccc
Confidence 88865444
No 328
>PHA00327 minor capsid protein
Probab=54.29 E-value=13 Score=35.34 Aligned_cols=31 Identities=13% Similarity=-0.121 Sum_probs=21.0
Q ss_pred hhhhhccccccccCCCchhHHHHHHHHhHHHHH
Q 016220 30 SKALHFGHPWICESSSPQYYFLHLAFQHCYCAI 62 (393)
Q Consensus 30 ~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~ 62 (393)
+|.+--..|-..|| |--..++++++||||+-
T Consensus 44 ~~~ia~rqmafQEr--MSnTA~qR~~eDmkkAG 74 (187)
T PHA00327 44 AKQIARRQMAFQER--MSNTAYQRAMEDMKKAG 74 (187)
T ss_pred HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHcC
Confidence 33333335667787 45667899999999976
No 329
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=54.29 E-value=32 Score=37.27 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=43.4
Q ss_pred chhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhh---hh-----------ccchhhHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEY---EK-----------KFYNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~Ey---EK-----------K~~~e~~Eq~q~MEKnlisMarEv 109 (393)
.|..+|+..+|++.+.+ |+++|+.|++=..+=|.|+|+ |+ =.+++ |...++++|-.|-.++
T Consensus 428 ~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~C~~l~~~CC~y~~---~s~~v~~~i~~l~e~~ 504 (561)
T PF00429_consen 428 QLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGLCAALKEECCFYIN---HSGIVRDSIKKLRERL 504 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS----------------HHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCchhhhCCceEEEEC---CccchhHHHHHHHHHH
Confidence 46777888888888777 799999999987777888775 22 12343 3456778887887788
Q ss_pred HHHHHHHhc
Q 016220 110 EKLRAELMN 118 (393)
Q Consensus 110 EKLRaElan 118 (393)
||++.|+.+
T Consensus 505 ~~~~~~~~~ 513 (561)
T PF00429_consen 505 EKRKRESND 513 (561)
T ss_dssp -HHHHHHT-
T ss_pred Hhhhhhccc
Confidence 888887764
No 330
>PLN03188 kinesin-12 family protein; Provisional
Probab=54.25 E-value=36 Score=40.60 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=41.9
Q ss_pred HHHHHHHhHHHHH---------------HHHHHHHHHHHHHhhhhhhhhhhccchhh--------------H-------H
Q 016220 50 FLHLAFQHCYCAI---------------FLKIWSKNAITFHLCRGTYEYEKKFYNDH--------------L-------E 93 (393)
Q Consensus 50 ~~~~~~~~~~~~~---------------l~~Eid~lrqElqr~R~a~EyEKK~~~e~--------------~-------E 93 (393)
.|..+..||||+. |-+||-.||-|-.+-|.-|--|.|.---+ | |
T Consensus 1132 ~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaee 1211 (1320)
T PLN03188 1132 RIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEE 1211 (1320)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888877 67888888888766666666665542211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 94 SLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaElana 119 (393)
-..+-||+...+-+|.|||-.+|.|.
T Consensus 1212 a~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1212 ALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233556666666666666655544
No 331
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=54.15 E-value=32 Score=32.47 Aligned_cols=71 Identities=10% Similarity=-0.060 Sum_probs=0.0
Q ss_pred Hhhhhhhcc--ccccccCCCchhHHHHHHHHhHHHHH------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHH
Q 016220 28 VYSKALHFG--HPWICESSSPQYYFLHLAFQHCYCAI------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVME 99 (393)
Q Consensus 28 ~~~k~~h~~--h~l~~e~~~~~~~~~~~~~~~~~~~~------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ME 99 (393)
+..|-=+++ |--.|+-| .+.+|...|..|.... |+.||+.|.+|++++-....-=|..+.+-......+|
T Consensus 84 At~KLr~iv~~tsancs~Q--VqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 84 ATEKLRLIVSFTSANCSHQ--VQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 016220 100 K 100 (393)
Q Consensus 100 K 100 (393)
.
T Consensus 162 ~ 162 (171)
T PF04799_consen 162 R 162 (171)
T ss_dssp H
T ss_pred H
No 332
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.14 E-value=67 Score=34.60 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEK 100 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEK 100 (393)
+++++..++.|+..+.+.+|-|++...|+++.++.+++
T Consensus 72 ~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~ 109 (475)
T PRK10361 72 LQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQ 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777888888888888777666665544
No 333
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=54.03 E-value=45 Score=31.11 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh--hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEY--EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~Ey--EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
..+|.+.++.|.+.|..+...++. +|=..-.+|.|++.||. |+..|+||.+-|+..|
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee----~~~~l~~le~~~~~~e 145 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEE----MLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344555555565555555444332 34456789999999984 6777777777766544
No 334
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.03 E-value=34 Score=35.86 Aligned_cols=29 Identities=10% Similarity=0.144 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 94 SLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
|++.+..-+....+++++|+.+|..+++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567778888888888876554
No 335
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.02 E-value=26 Score=33.30 Aligned_cols=10 Identities=50% Similarity=0.680 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 016220 107 TEVEKLRAEL 116 (393)
Q Consensus 107 rEvEKLRaEl 116 (393)
.|+|||+.-+
T Consensus 150 k~~eK~~~K~ 159 (261)
T cd07648 150 KEIEKAEAKL 159 (261)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 336
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=53.93 E-value=22 Score=33.94 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEK 85 (393)
|.+.||.++++|+++|.+++-+.
T Consensus 237 i~~~l~~~~~~l~~~~~~l~~~d 259 (279)
T PRK07417 237 LLRSLASYRQSLDQLEELIEQEN 259 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 57789999999999999998664
No 337
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=53.85 E-value=90 Score=23.42 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhhhh-------------hhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTY-------------EYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~-------------EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
...++.+++..++++.+. +.|+..+.........|++=+..+..+|++|+
T Consensus 26 ~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 88 (90)
T PF01627_consen 26 QEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLDELEAMLEQLR 88 (90)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHh
Confidence 556777777777766543 33433333333322345555555555555554
No 338
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=53.68 E-value=29 Score=39.56 Aligned_cols=47 Identities=19% Similarity=0.027 Sum_probs=25.6
Q ss_pred eeeeccchhhhHHhhh----hhhccccccccC------------CCchhHHHHHHHHhHHHHH
Q 016220 16 IFTCTLDFLFRQVYSK----ALHFGHPWICES------------SSPQYYFLHLAFQHCYCAI 62 (393)
Q Consensus 16 ~~~~~~d~~~~~~~~k----~~h~~h~l~~e~------------~~~~~~~~~~~~~~~~~~~ 62 (393)
+|+.+|-.+-||+-.- +..-+++||+|= +...+-+|-+|||.|+-..
T Consensus 334 ~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsEN 396 (861)
T PF15254_consen 334 EKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSEN 396 (861)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhh
Confidence 4444555566665431 223346676662 2235567778888776543
No 339
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.59 E-value=42 Score=35.70 Aligned_cols=14 Identities=7% Similarity=-0.223 Sum_probs=6.4
Q ss_pred hhHHHHHHHHhHHH
Q 016220 47 QYYFLHLAFQHCYC 60 (393)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (393)
..++|+.+..+|..
T Consensus 278 ~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 278 ALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 340
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=53.59 E-value=72 Score=28.07 Aligned_cols=38 Identities=11% Similarity=-0.132 Sum_probs=15.4
Q ss_pred chhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhh
Q 016220 46 PQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~Ey 83 (393)
.|..+....++++...+ |...++.+.+.++..+..++-
T Consensus 86 ~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~ 125 (213)
T PF00015_consen 86 KLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEE 125 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhh
Confidence 34444444444443332 233333333334444444443
No 341
>smart00030 CLb CLUSTERIN Beta chain.
Probab=53.39 E-value=35 Score=33.18 Aligned_cols=55 Identities=15% Similarity=-0.011 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI 103 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli 103 (393)
+.-+|+.|.+-+|. +|--||.--+|++.+=.++|.=||.+-|-|.-.+.||+.|-
T Consensus 20 vd~EI~nAl~GvKq--MK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~ 74 (206)
T smart00030 20 INKEIKNALKGVKQ--IKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLK 74 (206)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555433 45667777889999999999999999999999999999884
No 342
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=53.36 E-value=64 Score=25.34 Aligned_cols=50 Identities=6% Similarity=-0.091 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 016220 58 CYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 110 (393)
Q Consensus 58 ~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvE 110 (393)
+-..-|.++|..|+.||..+|..- .-+..++..+.+.+-|++--|-..+-
T Consensus 9 ls~~eL~~~l~~lkkeL~~lR~~~---~~~~~~n~~~i~~~rk~IARi~Tvl~ 58 (66)
T PRK00306 9 LSVEELNEKLLELKKELFNLRFQK---ATGQLENTHRLREVRRDIARIKTVLR 58 (66)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---HhCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 334558999999999999999433 23457888888888888766665553
No 343
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.34 E-value=39 Score=35.26 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK 86 (393)
..++||.+.|.|-+-.+--|+.+|..|+.++|.-|||--.
T Consensus 245 ~~~~V~Ea~Q~La~~~~~~E~~GL~~e~~~~~~~~e~~~E 284 (402)
T COG3551 245 ALLEVHEALQQLAVDRFDIEWKGLEREFSRAMPLLEYVGE 284 (402)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhHHHHHHHH
Confidence 4578999999998888888999999999999999998543
No 344
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=53.33 E-value=37 Score=30.93 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchh-hHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYND-HLESLQVMEKNY 102 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e-~~Eq~q~MEKnl 102 (393)
+.|++..-.|+++.|..||-|-.-.++ +-||-+.|||.|
T Consensus 106 ~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~~l 145 (145)
T PF14942_consen 106 KQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEKKL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 556666666666666666655433332 335555565543
No 345
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.29 E-value=1.5e+02 Score=31.68 Aligned_cols=37 Identities=14% Similarity=-0.012 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
.|+.+++|-+.+...++-|....-..+|.++.-|..|
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444455555555555555555555555555555443
No 346
>PRK03918 chromosome segregation protein; Provisional
Probab=53.25 E-value=69 Score=35.11 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhhh
Q 016220 64 LKIWSKNAITFHLCRG 79 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~ 79 (393)
..+|+.+++|+..+..
T Consensus 206 ~~ei~~l~~e~~~l~~ 221 (880)
T PRK03918 206 LREINEISSELPELRE 221 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 347
>PTZ00421 coronin; Provisional
Probab=53.21 E-value=13 Score=39.06 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 016220 62 IFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~E 82 (393)
.|.+++..-++||+|||.+++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~ 477 (493)
T PTZ00421 457 ALSEKLRTQHEEIKRCREALQ 477 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888899999998765
No 348
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=53.19 E-value=53 Score=30.75 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016220 96 QVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaE 115 (393)
+.+-..+-....|+|++.++
T Consensus 144 ~~~~~~v~~~~~ele~~~~~ 163 (219)
T PF08397_consen 144 KEALQDVTERQSELEEFEKQ 163 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333455555555554443
No 349
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=53.12 E-value=83 Score=31.42 Aligned_cols=71 Identities=8% Similarity=-0.072 Sum_probs=36.3
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~----q~MEKnlisMarEvEKLRaElana 119 (393)
.+..+++.+-.+| ...+++++..+++++|.+.-++ ++-...+.+|+. +..+.+|.+...++++++..|.++
T Consensus 98 ~~~~~~~~a~a~l--~~a~a~l~~a~~~~~R~~~L~~-~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~ 172 (385)
T PRK09578 98 PLKAARDAAAGAL--AKAEAAHLAALDKRRRYDDLVR-DRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLDYA 172 (385)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3444444333332 2346667777777877777654 222223333332 233445555555666666666543
No 350
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=53.07 E-value=44 Score=29.69 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 016220 63 FLKIWSKNAITFHLCR 78 (393)
Q Consensus 63 l~~Eid~lrqElqr~R 78 (393)
|-++++.+..|++..|
T Consensus 42 ld~~~~~i~~~l~~~~ 57 (163)
T PF05405_consen 42 LDERIQKIEDELNQSR 57 (163)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 351
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=52.71 E-value=53 Score=34.12 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=41.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 51 LHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDH--LESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 51 ~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~--~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
++.|+..|+ -.|...++.+|++|.++++.+|.+=..--|. ....+.+.+.|-.+.+||++|+..-.
T Consensus 140 ~~~al~~l~-G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~ 207 (449)
T PRK05291 140 ARLALRQLQ-GALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASAR 207 (449)
T ss_pred HHHHHHhcC-cHHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 3478899999999999999887422221111 12245566667777777777765544
No 352
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.68 E-value=50 Score=39.18 Aligned_cols=20 Identities=5% Similarity=-0.084 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~Ey 83 (393)
+.|++.+++|+..++..++-
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~ 301 (1353)
T TIGR02680 282 SRDLGRARDELETAREEERE 301 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 353
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=52.66 E-value=36 Score=33.97 Aligned_cols=8 Identities=0% Similarity=-0.234 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 016220 66 IWSKNAIT 73 (393)
Q Consensus 66 Eid~lrqE 73 (393)
.++.+++|
T Consensus 7 ~~~~~~~~ 14 (378)
T TIGR01554 7 QREEIVAE 14 (378)
T ss_pred HHHHHHHH
Confidence 33333333
No 354
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=52.59 E-value=50 Score=40.79 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+++|++.+..+|++.|.-||.=+..++++.++++..=+|+.-|=+++++|++.+..
T Consensus 417 ~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~ 472 (1822)
T KOG4674|consen 417 FKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLND 472 (1822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999987754
No 355
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.54 E-value=77 Score=32.13 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|+.+|+.|.++|-.++..|+ ||. -.+..+..++..+-.|+..||++|.-
T Consensus 117 Lkd~lee~eE~~~~~~re~~-eK~------~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 117 LKDKLEELEETLAQLQREYR-EKI------RELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777664 332 23445566788888899999999864
No 356
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.50 E-value=65 Score=27.96 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
+.-||-.|++++...++.++ .+ +..++ +..|+=|...++.+|||-.
T Consensus 59 v~~eL~~l~~k~~~~~~~~~--q~--i~~~~--~~~~~Al~~~a~~~e~l~~ 104 (105)
T COG3027 59 VMHELLKLKEKLRDIEASLE--QR--IRKLD--QALENALTTLAQRLEKLAE 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HH--HHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 47788888888877766222 11 11122 6677788889999999843
No 357
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=52.48 E-value=39 Score=40.19 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+++|++.++.|+..++.-++-..+.-.+..++.|.|-.-+..|-+|.+.+.+++...+
T Consensus 932 ~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1395)
T KOG3595|consen 932 KRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACE 989 (1395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777777777777777777777777777777777777777777765543
No 358
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=52.41 E-value=58 Score=25.52 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhh--------hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYE--------YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E--------yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+...|+.|++||+.--.-.| |+++... .....-|.-|..-.+.|+.||-+|.+
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~---~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK---KLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cCHHHHHHHHHHHHHHHHHHHHHHHH
No 359
>PRK12704 phosphodiesterase; Provisional
Probab=52.30 E-value=78 Score=34.04 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016220 98 MEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEl 116 (393)
.|++|-..-.|+++++.|+
T Consensus 115 re~~Le~re~eLe~~~~~~ 133 (520)
T PRK12704 115 KEKELEQKQQELEKKEEEL 133 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 360
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=52.23 E-value=49 Score=26.60 Aligned_cols=46 Identities=9% Similarity=-0.131 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarE 108 (393)
..-|.++|..|++||..+|-. =.-+..|+-.+.+.+-|++--|-..
T Consensus 14 ~~eL~~~l~elk~elf~LRfq---~atgql~n~~~ir~~RrdIARikTi 59 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLRLK---KATRQNFKPHLFKHKKHRLAQLLTL 59 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhCcccChHHHHHHHHHHHHHHHH
Confidence 455899999999999999922 1234566667777777766544433
No 361
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=52.22 E-value=56 Score=34.73 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..-|-.|+.||..+++.+.-=+....++-=|.+.++..+..|-++|+++|+.|..
T Consensus 285 ~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 285 YQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456667777776666665333323445567788888888889999999998864
No 362
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=51.99 E-value=86 Score=30.30 Aligned_cols=35 Identities=6% Similarity=-0.098 Sum_probs=23.4
Q ss_pred chhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhh
Q 016220 46 PQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a 80 (393)
+..-||.++.+++-... |+.||+.|++||++...+
T Consensus 27 EVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 27 EVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666777776654433 677777777777777665
No 363
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=51.89 E-value=19 Score=28.30 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 016220 103 ITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 103 isMarEvEKLRaElanae~~ 122 (393)
-.++.++|+|.+||++.|.|
T Consensus 34 ~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 34 GDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 34678899999999988754
No 364
>PF13166 AAA_13: AAA domain
Probab=51.88 E-value=1.1e+02 Score=32.89 Aligned_cols=18 Identities=0% Similarity=-0.234 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~ 81 (393)
..+++++.+|+..++..+
T Consensus 383 n~~~~~~~~~~~~~~~~~ 400 (712)
T PF13166_consen 383 NEKIDNLKKEQNELKDKL 400 (712)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555554444444
No 365
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=51.82 E-value=33 Score=35.25 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYIT 104 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlis 104 (393)
+.++..|.++|+++... ...|..+..+.||++|..
T Consensus 45 kkrLk~L~~sLk~~~~~------~~~e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 45 KKRLKELKKSLKRCKKS------LSAEERELIEKLEEDIKE 79 (330)
T ss_pred HHHHHHHHHHHHHhccC------CChhHHHHHHHHHHHHHH
Confidence 45566666666666443 344555556666665544
No 366
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=51.67 E-value=45 Score=37.67 Aligned_cols=76 Identities=14% Similarity=0.015 Sum_probs=42.2
Q ss_pred ccCCCchhHHHHHHHHhHHHHH------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 41 CESSSPQYYFLHLAFQHCYCAI------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 41 ~e~~~~~~~~~~~~~~~~~~~~------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
.||. .|..+|++..+-++... ..+|++.|.+..+.++..+..=.+.-.+.-+|+.+-+|.+---..|.+-||.
T Consensus 485 eERd-Rl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~ 563 (739)
T PF07111_consen 485 EERD-RLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRR 563 (739)
T ss_pred HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3554 36666666655542221 4666666666666666655544445556666666666666444445555555
Q ss_pred HHh
Q 016220 115 ELM 117 (393)
Q Consensus 115 Ela 117 (393)
||.
T Consensus 564 EL~ 566 (739)
T PF07111_consen 564 ELT 566 (739)
T ss_pred HHH
Confidence 543
No 367
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=51.59 E-value=82 Score=30.37 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=9.4
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 016220 68 SKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 68 d~lrqElqr~R~a~EyEK 85 (393)
..+-+++..+|.+++..-
T Consensus 129 ~~~~~~l~kaKk~Y~~~c 146 (258)
T cd07655 129 AKLLKKVEKAKKAYHAAC 146 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445666666655443
No 368
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=51.55 E-value=50 Score=26.85 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 92 LESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
-+++..+.+....+++||-.+=.+|
T Consensus 45 ~~~l~~~~~~~~~~~~~i~~~lk~l 69 (117)
T smart00503 45 REKLERLIDDIKRLAKEIRAKLKEL 69 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554443333
No 369
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=51.55 E-value=32 Score=31.57 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~~~ 124 (393)
.|++||+.|+++|..+|+.=|. -| . .+.+-.+-+.|-.|...|+||+-.+.
T Consensus 38 ~L~~El~~L~~~i~~Ar~~GDl--------sE--a--k~~~~~~e~rI~~L~~~L~~A~Ii~~ 88 (160)
T PRK06342 38 ALEDQLAQARAAYEAAQAIEDV--------NE--R--RRQMARPLRDLRYLAARRRTAQLMPD 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHCCCh--------hH--H--HHHHHHHHHHHHHHHHHHccCEEECC
Confidence 3677888887777777744322 22 0 11112233677888888888876653
No 370
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.35 E-value=46 Score=34.00 Aligned_cols=81 Identities=20% Similarity=0.083 Sum_probs=49.3
Q ss_pred ccccCCCch--hHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHH-------HH-------H
Q 016220 39 WICESSSPQ--YYFLHLAFQHC--YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQV-------ME-------K 100 (393)
Q Consensus 39 l~~e~~~~~--~~~~~~~~~~~--~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~-------ME-------K 100 (393)
|-.||+-.| ---++.|++-- |+..-+.|+-.|+.|.|++.-.||-.-|.+-.+...+|+ || |
T Consensus 30 LkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 30 LKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 666765321 11233444332 223358888999999999999999877777666554444 33 3
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 016220 101 NYITMATEVEKLRAELMNA 119 (393)
Q Consensus 101 nlisMarEvEKLRaElana 119 (393)
.|-.+-.||.+|+.||...
T Consensus 110 qie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 110 QIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777643
No 371
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=51.28 E-value=36 Score=34.27 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~Ey 83 (393)
.|..+|+.+++||..+..+++-
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888888888877654
No 372
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=51.26 E-value=86 Score=29.68 Aligned_cols=51 Identities=10% Similarity=-0.023 Sum_probs=28.1
Q ss_pred HHHHHHhHHHHHH---HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 51 LHLAFQHCYCAIF---LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 51 ~~~~~~~~~~~~l---~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
+....|+|++.+- ..|.|.|.++|..+...++-..+...++--|++...||
T Consensus 101 ~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~ 154 (194)
T PF15619_consen 101 TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKS 154 (194)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444455555442 55677777777777776665555544444444444433
No 373
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=51.12 E-value=1.4e+02 Score=24.58 Aligned_cols=54 Identities=6% Similarity=0.057 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|+-|++-|+-|++.+.+.+. +=-......+++.++..|-.+..+||+--..|.+
T Consensus 22 LqDE~~hm~~e~~~L~~~~~--~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 22 LQDEFGHMKMEHQELQDEYK--QMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888766543 3333556778888888888888888876665543
No 374
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=51.09 E-value=47 Score=32.08 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=21.2
Q ss_pred HHHHHhhhhhhhhhhccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Q 016220 71 AITFHLCRGTYEYEKKFYNDHLESLQVMEK-NYITMATEVEKLRAELMN 118 (393)
Q Consensus 71 rqElqr~R~a~EyEKK~~~e~~Eq~q~MEK-nlisMarEvEKLRaElan 118 (393)
-+.+..+|..+|.+-|. .+.+.|. +++ .=..+.+|++||++-|..
T Consensus 120 ~k~~~ksKk~Ye~~Cke-~~~a~~~--~~~~~~~~~~ke~~K~~~Kl~K 165 (240)
T cd07672 120 FKKTMESKKNYEQKCRD-KDEAEQA--VNRNANLVNVKQQEKLFAKLAQ 165 (240)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH--HhhccCCCCHHHHHHHHHHHHH
Confidence 34555666666655554 3333321 111 111235666666666553
No 375
>PRK00846 hypothetical protein; Provisional
Probab=50.99 E-value=42 Score=27.93 Aligned_cols=32 Identities=13% Similarity=-0.068 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R 78 (393)
-..++++||||--...|-..|-..+++|.+++
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~ 47 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARNA 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778887554445555544444444443
No 376
>KOG4171 consensus Adenylate/guanylate kinase [Nucleotide transport and metabolism]
Probab=50.98 E-value=31 Score=38.54 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=51.0
Q ss_pred eeeeeeccch-hhhHHhhhhhhcc----ccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 016220 14 TLIFTCTLDF-LFRQVYSKALHFG----HPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFY 88 (393)
Q Consensus 14 ~~~~~~~~d~-~~~~~~~k~~h~~----h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~ 88 (393)
.|+|+|.-=+ .-.|+...-||+- |-.+||=- -+..|.+-+.-|+.|+|.+..+|+..=.++|-|||..
T Consensus 341 sIlflcSP~V~~LdeL~~~GLyLsDiplHDatRDlI-------Ll~~Q~~aq~el~~~lE~~~~~Le~~~~~Le~EKkkT 413 (671)
T KOG4171|consen 341 SILFLCSPVVDNLDELTGRGLYLSDIPLHDATRDLV-------LLGQQRRAQLELNLELEKLKEKLEKMTRELEEEKKKT 413 (671)
T ss_pred eEEEEcCcccCchHHHHhCCceeccCCccccchhhe-------ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455553222 3356666667764 55555542 2334555556688899999999999999999999999
Q ss_pred hhhHHHH
Q 016220 89 NDHLESL 95 (393)
Q Consensus 89 ~e~~Eq~ 95 (393)
.++|-++
T Consensus 414 d~LLy~m 420 (671)
T KOG4171|consen 414 DTLLYSM 420 (671)
T ss_pred HHHHHHh
Confidence 9887554
No 377
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=50.97 E-value=82 Score=32.24 Aligned_cols=77 Identities=9% Similarity=-0.067 Sum_probs=37.3
Q ss_pred ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYN-----DHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~-----e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
|++=...++..+|..+--+| ...+++|+..+.+++|.+.-++ ++.-. +...+++..|.++-+--.++++++
T Consensus 115 La~ld~~~~~~~l~qaqa~l--~~a~a~l~~A~~~~~R~~~L~~--~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~ 190 (415)
T PRK11556 115 LAEIDPRPFKVALAQAQGQL--AKDQATLANARRDLARYQQLAK--TNLVSRQELDAQQALVSETEGTIKADEASVASAQ 190 (415)
T ss_pred EEEECcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433334444444443333 3456778888888887655432 21111 111223334444444445666666
Q ss_pred HHHhcC
Q 016220 114 AELMNA 119 (393)
Q Consensus 114 aElana 119 (393)
..|.+.
T Consensus 191 ~~L~~~ 196 (415)
T PRK11556 191 LQLDYS 196 (415)
T ss_pred HhhhCC
Confidence 666543
No 378
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.96 E-value=44 Score=33.62 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 92 LESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
.+..+.++++|-.+-.|+|++..||...+
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~E 220 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKE 220 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777766544
No 379
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.93 E-value=51 Score=36.98 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK 86 (393)
++|++.++++|...+..++-+|+
T Consensus 538 ~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 538 LKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 380
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.91 E-value=1e+02 Score=29.25 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
|...++.|++||+.+|..||
T Consensus 141 Le~~~~~le~~l~~~k~~ie 160 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIE 160 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665554
No 381
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=50.86 E-value=56 Score=35.52 Aligned_cols=28 Identities=18% Similarity=-0.013 Sum_probs=10.9
Q ss_pred HHHHHhhhhhhhhhhccchhhHHHHHHH
Q 016220 71 AITFHLCRGTYEYEKKFYNDHLESLQVM 98 (393)
Q Consensus 71 rqElqr~R~a~EyEKK~~~e~~Eq~q~M 98 (393)
++|++-.+..+|-=++.+++....++.+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~ 217 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKI 217 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 3344444444433333344433333333
No 382
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=50.84 E-value=55 Score=34.43 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEK--KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 123 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEK--K~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~~ 123 (393)
.|++=|+.|++++..+...++--+ ....++..+.+.+++.+-.+.+-++.|...|.+.+...
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444455555555544444433 45666677788888888888888888888887765543
No 383
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=50.83 E-value=13 Score=39.50 Aligned_cols=57 Identities=9% Similarity=-0.068 Sum_probs=35.5
Q ss_pred cccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHH
Q 016220 40 ICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVME 99 (393)
Q Consensus 40 ~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ME 99 (393)
|.+++ .|...|+. .+++| ..|..+|+.|++||...+.+++-....-.+..|..+..+
T Consensus 63 vkdgs-vL~Ln~e~-~d~vk-~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~ 119 (426)
T smart00806 63 IKDGS-VLVLNVEE-LDEVK-KHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSA 119 (426)
T ss_pred cccCe-eEEEeCcc-hhhHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcc
Confidence 44553 34444442 24444 347888999999999988888766655555555544444
No 384
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=50.80 E-value=18 Score=25.40 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 016220 62 IFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~E 82 (393)
.|+++|+.+|+|+.-.+.+||
T Consensus 3 ~l~a~I~~~r~~f~~~~~aF~ 23 (32)
T PF05465_consen 3 DLLAAIAEFREEFDDTQDAFE 23 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999998888886
No 385
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=50.49 E-value=5.2 Score=43.57 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.++.+|+.++++++.+...+.-|++..-.+..+++.++..+..+.+|.|.|..|+...
T Consensus 360 ~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L 417 (713)
T PF05622_consen 360 ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSL 417 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999888888888877776777777788888888888888887776543
No 386
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=50.47 E-value=42 Score=32.84 Aligned_cols=39 Identities=23% Similarity=0.136 Sum_probs=25.4
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 016220 78 RGTYEYEKKFYNDHLESLQVMEKNY-ITMATEVEKLRAEL 116 (393)
Q Consensus 78 R~a~EyEKK~~~e~~Eq~q~MEKnl-isMarEvEKLRaEl 116 (393)
|..-|+=|+...+.=+.-.+|+||+ ++=-++.|++++|.
T Consensus 105 ~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~ 144 (215)
T cd07632 105 TEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEV 144 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHH
Confidence 3344444555555556677888888 66677777777764
No 387
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.29 E-value=43 Score=33.52 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
++.+++.+.+||..++..++.-++.=.+.-++++.+++++-...+|.++|..++...+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888877766666666777888888898888888888888876543
No 388
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.29 E-value=53 Score=36.37 Aligned_cols=56 Identities=11% Similarity=-0.048 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-.+|||.-+.|.+++.--|+.=...--|..+|+..+..-+-++|.-++|+..+|.+
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~ 384 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKS 384 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 46788888888888876666655555667777777777777777777777666644
No 389
>PRK05907 hypothetical protein; Provisional
Probab=50.29 E-value=10 Score=37.77 Aligned_cols=30 Identities=7% Similarity=-0.045 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHH
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESL 95 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~ 95 (393)
-|..|.+||+++-.-+.-+++-..+.+|++
T Consensus 170 nL~~l~~EleKL~ly~g~~~~It~e~V~~l 199 (311)
T PRK05907 170 GLFEILSEFQKLLCQMGKKESLEASDIQSF 199 (311)
T ss_pred CHHHHHHHHHHHHHhcCCCCeECHHHHHHH
Confidence 455666666666554333444555555554
No 390
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.18 E-value=45 Score=36.46 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhh-----hhcc-chhhHHH----HHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEY-----EKKF-YNDHLES----LQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey-----EKK~-~~e~~Eq----~q~MEKnlisMarEvEKLRaElana 119 (393)
|+.||+....||+-+|+.++- +|+. +.|.+|- +..+-+||.-|--+++||+.++-..
T Consensus 335 l~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 566666666666666665543 2222 3333332 2346678888888999999887653
No 391
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=49.95 E-value=35 Score=32.82 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~----q~MEKnlisMarEvEKLRaElanae 120 (393)
++++|+.++.++..+++.++.-|+. .+.++.+ -+=+..|..+-.+++.++++|..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~-~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~ 155 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQRE-VDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEAL 155 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665543332 1112111 1123334445555666666666554
No 392
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.93 E-value=41 Score=30.69 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 016220 98 MEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 98 MEKnlisMarEvEKLRaElana 119 (393)
.++.......|||+|+.||.++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~ 173 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKK 173 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 3444445556666666666553
No 393
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=49.82 E-value=57 Score=36.55 Aligned_cols=10 Identities=20% Similarity=0.033 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 016220 200 PRGPGYEASK 209 (393)
Q Consensus 200 pRgp~Y~~sr 209 (393)
.|.-+||-|-
T Consensus 530 GRvqA~GWSL 539 (832)
T KOG2077|consen 530 GRVQAFGWSL 539 (832)
T ss_pred cceeeecccc
Confidence 3444555443
No 394
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=49.80 E-value=33 Score=34.77 Aligned_cols=27 Identities=11% Similarity=-0.175 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHH--HHHHHHHHHHHHHh
Q 016220 50 FLHLAFQHCYCAI--FLKIWSKNAITFHL 76 (393)
Q Consensus 50 ~~~~~~~~~~~~~--l~~Eid~lrqElqr 76 (393)
++...+.+.++.+ |+.+|++|+++|..
T Consensus 78 k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 78 KAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666664 78888888888753
No 395
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.70 E-value=83 Score=29.72 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
+|.+.|.++.-.+-.||.+|.+++
T Consensus 145 ~~~~~~~~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 145 RQAAKLKEKKEAKDKEISRLKSEA 168 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 396
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=49.68 E-value=43 Score=29.83 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 016220 105 MATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 105 MarEvEKLRaElanae~~~~ 124 (393)
+-+.|..|+.+|+++...+.
T Consensus 54 ~e~ri~~L~~~L~~a~iv~~ 73 (151)
T TIGR01462 54 NEGRIAELEDLLANAQVIDD 73 (151)
T ss_pred HHHHHHHHHHHHHhCcccCc
Confidence 34556667777777766543
No 397
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.68 E-value=53 Score=36.53 Aligned_cols=33 Identities=6% Similarity=-0.139 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhh
Q 016220 51 LHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 51 ~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~Ey 83 (393)
.+..+|+|.+.. ++.+|+.|++|++-++..+.-
T Consensus 225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~ 259 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKKIQALQQELEELKAELKE 259 (670)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544333 455566666666665555433
No 398
>PF15294 Leu_zip: Leucine zipper
Probab=49.66 E-value=47 Score=33.51 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
|..||+.|+.|.+.+|. .++..|+--..|++|=.||.++|.+.
T Consensus 130 l~kEi~rLq~EN~kLk~--------------rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKE--------------RLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888777764 56777777777777777777777654
No 399
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=49.58 E-value=41 Score=30.56 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 016220 105 MATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 105 MarEvEKLRaElanae~~~~ 124 (393)
+-+.|..|..+|++|.-.+-
T Consensus 59 ~e~rI~~L~~~L~~A~iid~ 78 (157)
T PRK01885 59 IDRRVRFLTKRLENLKVVDY 78 (157)
T ss_pred HHHHHHHHHHHHccCEEECC
Confidence 45678888889988766543
No 400
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=49.44 E-value=47 Score=28.24 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 016220 105 MATEVEKLRA 114 (393)
Q Consensus 105 MarEvEKLRa 114 (393)
|+.||..||.
T Consensus 75 l~~eis~L~~ 84 (86)
T PF12711_consen 75 LLQEISELRD 84 (86)
T ss_pred HHHHHHHHHh
Confidence 4555555553
No 401
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=49.34 E-value=42 Score=39.33 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElana 119 (393)
+.+|+..-.+..|+++||+|++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 187 AELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777788888888776443
No 402
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=49.29 E-value=76 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 016220 88 YNDHLESLQVMEK-NYITMATEVEKLRAELM 117 (393)
Q Consensus 88 ~~e~~Eq~q~MEK-nlisMarEvEKLRaEla 117 (393)
-+..||+--.||+ +..++..=+|.|.+-..
T Consensus 219 Q~~~Le~W~~le~~h~~sl~~~~~aL~a~~l 249 (311)
T PF04484_consen 219 QMPYLEEWAALEREHSSSLSGATEALKASTL 249 (311)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556777777776 56778888999988654
No 403
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=49.27 E-value=1.3e+02 Score=23.55 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..+|+..-.|...+=..+|.|-+.- .......|...|-..-.|+++|+.+|.
T Consensus 27 i~~~e~~l~ea~~~l~qMe~E~~~~--p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 27 IREIERDLDEAEELLKQMELEVRSL--PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444445556666533 446778888888888889999888874
No 404
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.21 E-value=40 Score=39.36 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=9.1
Q ss_pred cceeeeeeeeeeeecc
Q 016220 6 AHKLEIRCTLIFTCTL 21 (393)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (393)
-|+||++..-||-.+|
T Consensus 259 kmkiqleqlqEfkSki 274 (1243)
T KOG0971|consen 259 KMKIQLEQLQEFKSKI 274 (1243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666554443
No 405
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=49.16 E-value=35 Score=29.17 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK 86 (393)
|..|++.|.+|+.++|..++.|.+
T Consensus 54 L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 54 LENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665544
No 406
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=49.10 E-value=59 Score=34.18 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=16.2
Q ss_pred cCCCchhHHHHHHHHhHHHHHHHHHHH
Q 016220 42 ESSSPQYYFLHLAFQHCYCAIFLKIWS 68 (393)
Q Consensus 42 e~~~~~~~~~~~~~~~~~~~~l~~Eid 68 (393)
|+++.|...++.-++++.|.+++.-|+
T Consensus 83 q~~~~q~~~~~~~~~~v~~ek~rl~~~ 109 (377)
T KOG2896|consen 83 QCLSAQVQSMRVEMKEVSEEKLRLQIE 109 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666677777776655544
No 407
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.08 E-value=39 Score=38.88 Aligned_cols=15 Identities=0% Similarity=-0.108 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhh
Q 016220 64 LKIWSKNAITFHLCR 78 (393)
Q Consensus 64 ~~Eid~lrqElqr~R 78 (393)
..||+.|+++|+..-
T Consensus 485 isei~qlqarikE~q 499 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 408
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=49.04 E-value=49 Score=32.31 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016220 99 EKNYITMATEVEKLR 113 (393)
Q Consensus 99 EKnlisMarEvEKLR 113 (393)
-+++....+|.|+|+
T Consensus 136 K~~Y~~~c~e~e~~~ 150 (269)
T cd07673 136 KENYNAKCLEQERLK 150 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
No 409
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.90 E-value=82 Score=26.41 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 49 YFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 49 ~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
+.|+.+++.|.+++ |.|..-+.+-. |.+.+. .+.-+.+|.|...--.||.|+++..+++.+.
T Consensus 4 ~~le~al~rL~~ai-----d~LE~~v~~r~---~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 4 YSLEAALTRLEAAI-----DRLEKAVDRRL---ERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred chHHHHHHHHHHHH-----HHHHHHHHHHH---Hhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 45667777765554 33333222221 222222 5556677888888888888888888876543
No 410
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.77 E-value=56 Score=32.26 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=38.9
Q ss_pred ccccccCCCchhHHHH--HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 016220 37 HPWICESSSPQYYFLH--LAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT 107 (393)
Q Consensus 37 h~l~~e~~~~~~~~~~--~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar 107 (393)
|++..+-+ -++.+|. +++|+.++. +..+++..+.|-.+.+. ..+|||+.-++.+-.+ |++++.|.+
T Consensus 65 ~d~~~~~~-~~~~~l~r~i~fq~~qr~-~~~~~~~~~~~~~req~-~~~~~K~~e~~~ql~k--e~a~~~~nr 132 (233)
T KOG4739|consen 65 ADPPRLIQ-DLYRKLQRVINFQHKQRN-LQVKLELKQLEKDREQT-AYFEKKTQEETQQLSK--EEAFIENNR 132 (233)
T ss_pred cCcHHHHH-HHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 55555543 2555554 456666666 66666666555555444 4577777655544333 777777764
No 411
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=48.73 E-value=55 Score=27.61 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEK 100 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEK 100 (393)
...|...|+..++++.+++..+|.-++.-.+..-..++|||
T Consensus 70 ~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lek 110 (141)
T TIGR02473 70 IRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777777777766666666666666654
No 412
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=48.67 E-value=25 Score=26.99 Aligned_cols=27 Identities=7% Similarity=-0.084 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKF 87 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~ 87 (393)
..|++.++.|+.+++++.++|.-=||.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999887774
No 413
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.67 E-value=1.1e+02 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=22.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 86 KFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 86 K~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
....+.-++...|+++|..+-..|++||+.+.
T Consensus 106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677788888888888888887653
No 414
>PLN02939 transferase, transferring glycosyl groups
Probab=48.65 E-value=31 Score=40.08 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHh--hhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHL--CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr--~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+++.+.+| |..|+.||+.|.--|.. +|.-+--|-|.++|++|. ++||||.||+
T Consensus 157 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 211 (977)
T PLN02939 157 DLEKILTE--KEALQGKINILEMRLSETDARIKLAAQEKIHVEILEE-------------QLEKLRNELL 211 (977)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHH-------------HHHHHhhhhh
No 415
>PRK02119 hypothetical protein; Provisional
Probab=48.62 E-value=41 Score=27.25 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=14.5
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITF 74 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqEl 74 (393)
-..++++||||--...|-..|-..+++|
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~i 39 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVI 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777744444444443333333
No 416
>PRK10780 periplasmic chaperone; Provisional
Probab=48.61 E-value=1e+02 Score=27.63 Aligned_cols=7 Identities=0% Similarity=0.078 Sum_probs=3.0
Q ss_pred eeeccch
Q 016220 17 FTCTLDF 23 (393)
Q Consensus 17 ~~~~~d~ 23 (393)
||+-||+
T Consensus 25 KIg~Vd~ 31 (165)
T PRK10780 25 KIAIVNM 31 (165)
T ss_pred CeEEeeH
Confidence 3444444
No 417
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.51 E-value=49 Score=33.27 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHH-HHHHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLE-SLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~E-q~q~MEKnlisMarEvEKLR 113 (393)
++|+....+|++-+|..|. |=|++.-.+| ..-.|+|++..+-.-|+|+.
T Consensus 213 ~EeL~~~Eke~~e~~~~i~-e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERIT-EMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666776665 3344433333 34457777777777777764
No 418
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.42 E-value=66 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 016220 100 KNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 100 KnlisMarEvEKLRaElana 119 (393)
--+.+|-+||++++..|..+
T Consensus 50 ve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 50 VEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444
No 419
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.41 E-value=48 Score=32.60 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+++..+..-.-+|..-+-=|....|.-.....|||--.++.++||.|+.||.+..
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344467777888899999999999999999998753
No 420
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.18 E-value=74 Score=27.95 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 016220 61 AIFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~E 82 (393)
..|+.|||..++||.+-|..++
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~ 49 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVN 49 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888777665
No 421
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=48.17 E-value=22 Score=29.85 Aligned_cols=36 Identities=8% Similarity=-0.085 Sum_probs=19.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 016220 48 YYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEK 85 (393)
-.+|.....++ ..|..|++.|++++..+...++.-+
T Consensus 24 D~fl~~l~~~~--~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 24 DDFLDELAEEL--ERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555555552 4466777778777777776655433
No 422
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.04 E-value=45 Score=35.45 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016220 94 SLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaEl 116 (393)
+.+.+++.|...|.++-++|.+.
T Consensus 354 el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 354 EVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 423
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=48.00 E-value=1.3e+02 Score=29.85 Aligned_cols=56 Identities=9% Similarity=-0.066 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh-hhccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEY-EKKFYNDHL-ESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~Ey-EKK~~~e~~-Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
-|.+||+.++++|..++.++.- -++.++-.. ++.++..+.+-.+-.++.+|++||+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888777766643 222222222 2233333334444444445555554
No 424
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=48.00 E-value=43 Score=26.57 Aligned_cols=16 Identities=25% Similarity=0.135 Sum_probs=8.6
Q ss_pred hHHHHHHHHhHHHHHH
Q 016220 48 YYFLHLAFQHCYCAIF 63 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~l 63 (393)
..++++|++|--...|
T Consensus 8 ~LE~~la~qe~~ie~L 23 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEEL 23 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566667766433334
No 425
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=47.99 E-value=1.1e+02 Score=30.28 Aligned_cols=24 Identities=8% Similarity=0.349 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 95 LQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLRaElan 118 (393)
+.-+.|.+...++.+|..|....+
T Consensus 133 veK~Kk~Y~~~c~~~e~AR~K~ek 156 (237)
T cd07685 133 IEKLKSQYRSLAKDSAQAKRKYQE 156 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555554444
No 426
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=47.95 E-value=88 Score=26.50 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEv 109 (393)
++-..-|.++|++|++||..+|..- .-+..++..+.+.+-|++--|-..+
T Consensus 7 ~lS~eEL~e~L~elkkELf~LR~q~---atgql~n~~~ir~iRR~IARilTvl 56 (87)
T PRK00461 7 KKSVEELEKLVIELKAELFTLRFKN---ATGSLDQTHKIKEIRKDIARILTIL 56 (87)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHH---HhCcccccHHHHHHHHHHHHHHHHH
Confidence 3445568999999999999999321 1124577778888988876655544
No 427
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=47.89 E-value=27 Score=38.32 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=60.4
Q ss_pred ccccCCCchhHHHHHHHHhHHHH--HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCA--IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~--~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
+..+|- +.-+.|..-|+|++-. .|..|-+.|+.|+-.+=.+.+.-|..+-.++|..|++|.=|=.++--||||.--|
T Consensus 432 yy~~rn-~rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi~~~i~kl~~pl 510 (707)
T KOG0957|consen 432 YYTKRN-ERMSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQILTSIEKLHQPL 510 (707)
T ss_pred HHHHHH-HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHhhhhhHHHhcchh
Confidence 445553 4566777777776544 3677778888888877777777777888899999999999988999999998766
Q ss_pred hc
Q 016220 117 MN 118 (393)
Q Consensus 117 an 118 (393)
.-
T Consensus 511 ~e 512 (707)
T KOG0957|consen 511 TE 512 (707)
T ss_pred hh
Confidence 53
No 428
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=47.85 E-value=43 Score=32.45 Aligned_cols=34 Identities=6% Similarity=-0.167 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHHHHHHHHHH-HHHHHHhhhhhhhh
Q 016220 50 FLHLAFQHCYCAIFLKIWSK-NAITFHLCRGTYEY 83 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~-lrqElqr~R~a~Ey 83 (393)
-|..+...|+...|++||.. |+||-+|.|.=-.+
T Consensus 46 svr~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~ 80 (253)
T PF10118_consen 46 SVRRARPQIKDPELREEIKGFIGQEAMHSREHRKF 80 (253)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777889999987 79999999965443
No 429
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.77 E-value=66 Score=37.10 Aligned_cols=57 Identities=18% Similarity=0.067 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEK---KFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEK---K~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.+-|.+||+.|++|+++.-..+.-|+ |+..+.+|+.+.-.+++ ..+++||+..|++.
T Consensus 816 ~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~---~~~~~~l~~~l~~l 875 (877)
T COG0525 816 LARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEY---QVKLAKLEERLAVL 875 (877)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhH---HHHHHHHHHHHHHh
Confidence 44566777777777777665555433 66666666665555444 34566666666543
No 430
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=47.49 E-value=34 Score=40.46 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=12.3
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHH
Q 016220 94 SLQVMEKNY-----ITMATEVEKLRAE 115 (393)
Q Consensus 94 q~q~MEKnl-----isMarEvEKLRaE 115 (393)
|+|+|..|| +.++++|..|..|
T Consensus 1168 qLq~~~~kL~dAyl~eitKqIsaLe~e 1194 (1439)
T PF12252_consen 1168 QLQVIHTKLYDAYLVEITKQISALEKE 1194 (1439)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 566666654 4455555555543
No 431
>PLN02372 violaxanthin de-epoxidase
Probab=47.44 E-value=90 Score=33.53 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 016220 91 HLESLQVMEKNYITMATEVE 110 (393)
Q Consensus 91 ~~Eq~q~MEKnlisMarEvE 110 (393)
+.|-++.+|+++++.-+|+-
T Consensus 408 ~~~~~~~l~~~~~~f~~~ls 427 (455)
T PLN02372 408 LEEGLKELEQDEENFLKELS 427 (455)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 45556666666666555543
No 432
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=47.43 E-value=80 Score=31.02 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=46.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH------------HHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 51 LHLAFQHCYCAIFLKIWSKNAI------------TFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 51 ~~~~~~~~~~~~l~~Eid~lrq------------Elqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+|.+++.=..+.||.=++.|++ -+.-++.|.+|=+|+.-..-+|.|.||+ +.+|=.||.++|++
T Consensus 62 ~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~----l~~e~~~l~~rl~q 137 (232)
T KOG2483|consen 62 HHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIED----LSRENRKLKARLEQ 137 (232)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444433334445555555543 4677888899988888888888887775 78888888888887
Q ss_pred CCC
Q 016220 119 APN 121 (393)
Q Consensus 119 ae~ 121 (393)
++.
T Consensus 138 l~~ 140 (232)
T KOG2483|consen 138 LSL 140 (232)
T ss_pred hcC
Confidence 664
No 433
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=47.42 E-value=25 Score=33.85 Aligned_cols=11 Identities=27% Similarity=0.017 Sum_probs=5.8
Q ss_pred hhccccccccC
Q 016220 33 LHFGHPWICES 43 (393)
Q Consensus 33 ~h~~h~l~~e~ 43 (393)
+-..|..++|.
T Consensus 76 ~a~~H~~l~~~ 86 (258)
T cd07655 76 LSELHLSIRDK 86 (258)
T ss_pred HHHHHHHHHHH
Confidence 34446655554
No 434
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.37 E-value=58 Score=39.38 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.|+.+|+.++++.+.+|..++--++...+.-..++.+++++-...++++++..||.+.
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~ 1046 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677777888888888888877777777777777888888888888888888888754
No 435
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=47.32 E-value=72 Score=30.78 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=12.6
Q ss_pred ccchhhhHHhhhhhhccccccccC
Q 016220 20 TLDFLFRQVYSKALHFGHPWICES 43 (393)
Q Consensus 20 ~~d~~~~~~~~k~~h~~h~l~~e~ 43 (393)
-++.+++..+ -|+.|++|+.
T Consensus 90 ~i~~las~fy----~qrnmyl~g~ 109 (192)
T COG5374 90 RIAVLASRFY----AQRNMYLSGS 109 (192)
T ss_pred HHHHHHHHHH----HHHHHHHHHH
Confidence 3444555444 4888999995
No 436
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=47.29 E-value=30 Score=35.70 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElana 119 (393)
+.++..+..+-+|+++|+.||...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 39 EYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555666666666543
No 437
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=47.27 E-value=40 Score=33.97 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=34.5
Q ss_pred HHHHHHhhhhhhhhhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 016220 70 NAITFHLCRGTYEYEKKFYNDHLE-SLQVMEKNYITMATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 70 lrqElqr~R~a~EyEKK~~~e~~E-q~q~MEKnlisMarEvEKLRaElanae~~~~ 124 (393)
-..|..|-.+-||-||.+++...- |.+.||| |-||+-+|++|+..-+|
T Consensus 205 KeAETerkkAviEAEK~AqVa~I~~qqkl~EK-------etekr~~eiE~~~~Lar 253 (322)
T KOG2962|consen 205 KEAETERKKAVIEAEKNAQVAKILMQQKLMEK-------ETEKRISEIEDAAFLAR 253 (322)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh-------HHHHHHHHHHHHHhHhh
Confidence 345788889999999999987665 4456665 67777777776655443
No 438
>PHA02607 wac fibritin; Provisional
Probab=47.25 E-value=31 Score=36.89 Aligned_cols=62 Identities=5% Similarity=0.051 Sum_probs=48.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+||.-+++.-+-.|..|+.+||+||=.-=-++. .--+..+..+|.++..+-.||+.|+.+|-
T Consensus 195 ~LE~~~~~sdVg~Lt~~v~~lR~ElG~~~~at~------~~iY~RL~~lE~~~~~~~~eI~~Ik~~Ig 256 (454)
T PHA02607 195 ELENDWADSDVGQLTREVNDLRAELGPSSLATG------EPIYTRLNTLEDAITGINSDIDEIKTAIG 256 (454)
T ss_pred HHHhhhhhcCchHHHHHHHHHHHHhCCCCcccC------ccHHHHHHHHhhhhhhhhhHHHHHHHHhC
Confidence 466667777777789999999999854332322 34578899999999999999999999996
No 439
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=47.24 E-value=40 Score=35.66 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=48.7
Q ss_pred hhhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHH---------------HHHH---HHHHHHHHHhhhhhhhhhh
Q 016220 24 LFRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAI---------------FLKI---WSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 24 ~~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~---------------l~~E---id~lrqElqr~R~a~EyEK 85 (393)
..++-.+|+-|-+ | ||- --..|...+|||.+.+ |++- |..|+|+.||+|...-..|
T Consensus 227 ~~rdr~Krd~HNe---V-ERR--RR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk 300 (411)
T KOG1318|consen 227 LERDRRKRDNHNE---V-ERR--RRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQK 300 (411)
T ss_pred hHHHHHHHhhhhH---H-HHH--HHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4556666776654 2 331 2456777778876655 5444 5567888888875544444
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 86 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 86 K~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
| +|.+.-.++..||+|..|+...
T Consensus 301 ~-----------le~~n~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 301 K-----------LESTNQELALRIEELKSEAGRH 323 (411)
T ss_pred H-----------HHhHHHHHHHHHHHHHHHHHHh
Confidence 4 2344455777888888877654
No 440
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=47.17 E-value=40 Score=39.43 Aligned_cols=12 Identities=0% Similarity=-0.238 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITF 74 (393)
Q Consensus 63 l~~Eid~lrqEl 74 (393)
+.+||+.|++||
T Consensus 147 ~~~~~~~l~~~~ 158 (1123)
T PRK11448 147 LQQEVLTLKQQL 158 (1123)
T ss_pred hHHHHHHHHHHH
Confidence 445556555555
No 441
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.14 E-value=50 Score=31.31 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 016220 107 TEVEKLRAELM 117 (393)
Q Consensus 107 rEvEKLRaEla 117 (393)
.|||||+.-|.
T Consensus 153 ke~eK~~~K~~ 163 (239)
T cd07647 153 KEAEKLKKKAA 163 (239)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 442
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.11 E-value=89 Score=33.76 Aligned_cols=25 Identities=4% Similarity=-0.193 Sum_probs=11.9
Q ss_pred HHHHHHHHHH----HHHhhhhhhhhhhcc
Q 016220 63 FLKIWSKNAI----TFHLCRGTYEYEKKF 87 (393)
Q Consensus 63 l~~Eid~lrq----Elqr~R~a~EyEKK~ 87 (393)
|++|.+.||+ --+|...+++-|++.
T Consensus 85 l~~eN~~L~~r~~~id~~i~~av~~~~~~ 113 (472)
T TIGR03752 85 LKAENERLQKREQSIDQQIQQAVQSETQE 113 (472)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhHH
Confidence 5555555555 223334455555433
No 443
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=47.06 E-value=1e+02 Score=31.59 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=39.2
Q ss_pred HHHHHHHhHHHHH-HHHHHHHHHHHH----Hh--------hhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 50 FLHLAFQHCYCAI-FLKIWSKNAITF----HL--------CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 50 ~~~~~~~~~~~~~-l~~Eid~lrqEl----qr--------~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
-|..|-+|+.+.. |++.|+.+.... +. +|.-|+.-+.++.++-.|+..|++.|-.|-++|+.|+..|
T Consensus 209 ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai 288 (384)
T PF03148_consen 209 NIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAI 288 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555556655544 566666554432 22 2233344455555666666667777777777777777666
Q ss_pred hc
Q 016220 117 MN 118 (393)
Q Consensus 117 an 118 (393)
..
T Consensus 289 ~~ 290 (384)
T PF03148_consen 289 RD 290 (384)
T ss_pred HH
Confidence 54
No 444
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=47.04 E-value=37 Score=25.39 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-.-+..+.||.-+..|..|.+.|+.+|+.
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777753
No 445
>PF14282 FlxA: FlxA-like protein
Probab=47.00 E-value=1e+02 Score=26.34 Aligned_cols=54 Identities=7% Similarity=0.133 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh--hh-hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 60 CAIFLKIWSKNAITFHLCRGT--YE-YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a--~E-yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
...|+..|..|.++|+.+... ++ -+| .++.+.+..-|-.|=..|..|..+.+..
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k------~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQK------QQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355888889999999888773 12 233 3555555555555666666666665543
No 446
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=46.97 E-value=65 Score=30.39 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016220 97 VMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaEla 117 (393)
.+|+.|..|...+|+--|+|.
T Consensus 147 lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 147 LLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888875
No 447
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=46.60 E-value=1.7e+02 Score=24.48 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 016220 100 KNYITMATEVEKLRA 114 (393)
Q Consensus 100 KnlisMarEvEKLRa 114 (393)
.+|...-.+.|+++.
T Consensus 135 ~~~~~ar~~y~~~~~ 149 (194)
T cd07307 135 EELQEAKEKYEELRE 149 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 448
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=46.51 E-value=1.4e+02 Score=28.06 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=18.7
Q ss_pred hhccchhhHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Q 016220 84 EKKFYNDHLESLQVMEKNYITM----ATEVEKLRAELMN 118 (393)
Q Consensus 84 EKK~~~e~~Eq~q~MEKnlisM----arEvEKLRaElan 118 (393)
|.+.-..+-.|.+++-.++..| -|++.++|+|++.
T Consensus 139 eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r 177 (182)
T PF15035_consen 139 EHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFAR 177 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333344445555555555544 3456667777664
No 449
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.50 E-value=83 Score=28.26 Aligned_cols=71 Identities=4% Similarity=0.001 Sum_probs=38.9
Q ss_pred cccccCCCchhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
|+.+-|+ +...+....|.|..++ |.+=-+.|-|-|+++=.-+| |+.|--+.|++++..+-.+|+.++.|
T Consensus 34 M~vTrr~--m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klD-------e~~ei~~~i~~eV~~v~~dv~~i~~d 104 (126)
T PF07889_consen 34 MFVTRRS--MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLD-------EQKEISKQIKDEVTEVREDVSQIGDD 104 (126)
T ss_pred HHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3556563 6777888888876654 33333333344444333332 34455555666666666666666665
Q ss_pred Hh
Q 016220 116 LM 117 (393)
Q Consensus 116 la 117 (393)
+.
T Consensus 105 v~ 106 (126)
T PF07889_consen 105 VD 106 (126)
T ss_pred HH
Confidence 54
No 450
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.49 E-value=44 Score=37.25 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
|+.||+.|+.|+..+++-++-= -..+++..-.++.+-.|-++|++|+.+|.+..+
T Consensus 441 L~~~~ee~k~eie~L~~~l~~~----~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 441 LKRELEELKREIEKLESELERF----RREVRDKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444321 123334444555666788999999999988544
No 451
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=46.41 E-value=58 Score=36.40 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=40.0
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhh-----hhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGT-----YEYEKKFYNDHLESLQVMEKNYITMATEVEK 111 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a-----~EyEKK~~~e~~Eq~q~MEKnlisMarEvEK 111 (393)
.||--|+-...--+.-|+-|..-| |+.+|..++-||.++|+. .+-||| .+...||.|..+-..|+|
T Consensus 622 IlCNHQR~v~K~h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k-------~~Ek~~k~~~~l~eqi~k 694 (759)
T KOG0981|consen 622 ILCNHQRAVSKTHEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKK-------EVEKKEKKLERLEEQLKK 694 (759)
T ss_pred eeecccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc-------cHHHHHHHHHHHHHHHHH
Confidence 456555533322222233332222 455566666666666543 222232 445567777777778888
Q ss_pred HHHHHhcCC
Q 016220 112 LRAELMNAP 120 (393)
Q Consensus 112 LRaElanae 120 (393)
|+..+.+-|
T Consensus 695 l~~q~~dke 703 (759)
T KOG0981|consen 695 LEIQMTDKE 703 (759)
T ss_pred Hhhhccchh
Confidence 887776544
No 452
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=46.40 E-value=50 Score=33.31 Aligned_cols=90 Identities=16% Similarity=0.017 Sum_probs=51.7
Q ss_pred eeeeccchhhhHHhhhhhhccccccccCCCchhHHH-HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHH
Q 016220 16 IFTCTLDFLFRQVYSKALHFGHPWICESSSPQYYFL-HLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLES 94 (393)
Q Consensus 16 ~~~~~~d~~~~~~~~k~~h~~h~l~~e~~~~~~~~~-~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq 94 (393)
.|-.+|.-+---+|.|.|.|--|-+-|-.+...+.- +.+|++++.+ =++|++.|..+-+|.+..-|-=++-..+.+++
T Consensus 125 DFd~EV~PiLeVLVgKtlEQAl~EV~EEeEL~~lr~~q~~fe~~R~a-El~e~qrlE~~e~r~~eEkerR~~q~~~~~~~ 203 (291)
T PF06098_consen 125 DFDEEVKPILEVLVGKTLEQALMEVMEEEELAALRRQQRAFEELRNA-ELAEVQRLEEAEKRRREEKERRIKQQKERLEK 203 (291)
T ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555557778888888887553333322111111 2334443332 34566666666666666555556666667777
Q ss_pred HHHHHHHHHHHH
Q 016220 95 LQVMEKNYITMA 106 (393)
Q Consensus 95 ~q~MEKnlisMa 106 (393)
.+.|.+++++.+
T Consensus 204 ~~~~~~Ki~Ar~ 215 (291)
T PF06098_consen 204 EKELREKIAARA 215 (291)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 453
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=46.36 E-value=63 Score=34.19 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhhh---hhhh----hhc--cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRG---TYEY----EKK--FYNDH-LESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~---a~Ey----EKK--~~~e~-~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+..+|=.+|+|+-++|. -+|+ +.+ ...|. ..-+++++++++.+++++-++++++...+
T Consensus 182 il~~lv~~R~~~Akl~Gy~s~~e~~~~~~~r~~~~~e~v~~~l~~v~~~~~p~~~~~~~~k~k~lG~~ 249 (549)
T TIGR02289 182 IYDELVQIRTQIALNLGFSNYRDYMYKLKNRTDYSAEDCYKYRESILKYVVPLWTKLRKIKKKRLGIK 249 (549)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCC
Confidence 45555566666666652 2222 222 23333 46678899999999999999998876544
No 454
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=46.20 E-value=95 Score=28.53 Aligned_cols=53 Identities=11% Similarity=-0.074 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEv 109 (393)
.|.+++...|||.+++++..+|..----++.-.+..++...-+++|..--+++
T Consensus 59 ~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~ 111 (152)
T PF07321_consen 59 IQGKVVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQL 111 (152)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778999999999998886543333333344444444444444444433
No 455
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=46.20 E-value=29 Score=33.81 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=23.3
Q ss_pred hhhhhcc-ccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 016220 30 SKALHFG-HPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 30 ~k~~h~~-h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK 86 (393)
-|+||.. |-|-.|+| +|..+-..-.+| +..+..-++.--+|++-.|.+|+-||.
T Consensus 47 Q~~L~~e~~~l~~eqQ-~l~~er~~l~~e--r~~~~~~~~e~~~~~e~~r~~fekekq 101 (228)
T PRK06800 47 QKSLHKELNQLRQEQQ-KLERERQQLLAD--REQFQEHVQQQMKEIEAARQQFQKEQQ 101 (228)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445543 33444544 244333333333 222222233333455556666666554
No 456
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=46.20 E-value=1.1e+02 Score=26.60 Aligned_cols=46 Identities=7% Similarity=-0.261 Sum_probs=24.4
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhh
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYE 84 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyE 84 (393)
.+.+|.......|..|-+.+..+. .++.|+..++|.+..+....-|
T Consensus 32 ~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~e 82 (156)
T PRK05759 32 ALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKR 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655666655555433333 3555555666655555444433
No 457
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=46.19 E-value=1.7e+02 Score=31.87 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=4.0
Q ss_pred ceeeeeeee
Q 016220 7 HKLEIRCTL 15 (393)
Q Consensus 7 ~~~~~~~~~ 15 (393)
.+|+|...|
T Consensus 474 ~~i~v~f~i 482 (653)
T PTZ00009 474 PQIEVTFDI 482 (653)
T ss_pred ceEEEEEEE
Confidence 345444443
No 458
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.12 E-value=1.2e+02 Score=33.24 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 99 EKNYITMATEVEKLRA 114 (393)
Q Consensus 99 EKnlisMarEvEKLRa 114 (393)
|..|..+-||+|-.|.
T Consensus 375 ~~e~~~L~Re~~~~~~ 390 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQ 390 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555554443
No 459
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.12 E-value=78 Score=35.36 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..|+.||+.|-+||...-..+----..-.++||+...+++.+-.|--|.+-+|.||.
T Consensus 11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eld 67 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELD 67 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655443332222223346677777777776666666666666654
No 460
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.04 E-value=27 Score=38.14 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=9.0
Q ss_pred hhHHHHHHHHhHHHHH
Q 016220 47 QYYFLHLAFQHCYCAI 62 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~ 62 (393)
.+++|+.|..||+-.+
T Consensus 274 a~~~l~ea~~el~~~~ 289 (557)
T COG0497 274 ALYELEEASEELRAYL 289 (557)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666555444
No 461
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=45.92 E-value=76 Score=23.53 Aligned_cols=67 Identities=4% Similarity=0.104 Sum_probs=38.3
Q ss_pred HHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 50 FLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 50 ~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.|+...++|+..+ |+..|+.|....+ ..++-.|..+.. +.....+.|.++|-.|...|......+..
T Consensus 15 ~~~~~~~~l~~~~~~l~~~~~~l~~~W~-G~a~~af~~~~~-~~~~~~~~~~~~L~~~~~~l~~~~~~~~~ 83 (86)
T PF06013_consen 15 QLQAQADELQSQLQQLESSIDSLQASWQ-GEAADAFQDKFE-EWNQAFRQLNEALEELSQALRQAAQNYEQ 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBT-SSTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445554443 5666666633333 555555555444 66666667777777777777666555543
No 462
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=45.84 E-value=24 Score=32.37 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
.|++.++.||..+++.++..|+ .++..+.|.+.-..-..|+++.+.++..++
T Consensus 16 ~~~~~~~a~l~~a~~~l~~a~~----~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~ 67 (265)
T TIGR00999 16 PELAKMAAELKVAQKRVELARK----TYEREKKLFEQGVIPRQEFESAEYALEEAQ 67 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
No 463
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=45.70 E-value=15 Score=37.46 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccC
Q 016220 97 VMEKNYITMATEVEKLRAELMNAPNVDRRA 126 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElanae~~~~~~ 126 (393)
.|++.+-.+..+|++|..-|.+.+++.++.
T Consensus 162 ~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 162 EIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 344444445555666777777777777764
No 464
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.59 E-value=1.1e+02 Score=29.59 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=39.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCC
Q 016220 49 YFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYE-YEKKFYNDHLESLQVME---KNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 49 ~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~E-yEKK~~~e~~Eq~q~ME---KnlisMarEvEKLRaElanae~ 121 (393)
...|..+-|.....+-.+|..|.+++++.|..+. .-.+...|++...+.|+ |++-.+-+|.++-+..+..+|+
T Consensus 83 a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~ 159 (241)
T cd07656 83 SRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEK 159 (241)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455667777777777665543 33344444444444444 5566677776666655555443
No 465
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.55 E-value=77 Score=27.82 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 97 VMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElanae~ 121 (393)
.+.=+---|.+.||.|..||....+
T Consensus 51 SL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 51 SLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445577788888999986544
No 466
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=45.40 E-value=1.7e+02 Score=28.58 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL 95 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~ 95 (393)
..++.|++.++++.......++-+++.+-+++.|+
T Consensus 214 e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L 248 (297)
T PF02841_consen 214 EAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQL 248 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555556666666666666665553
No 467
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.32 E-value=30 Score=33.89 Aligned_cols=40 Identities=15% Similarity=-0.012 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHH
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVM 98 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~M 98 (393)
+..-|.+|+..++++++.+|..++-=|+-|++++|..+=|
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788888899999999999988888999998876654
No 468
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=45.18 E-value=84 Score=27.98 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 88 YNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 88 ~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-.++-++++.+|+-|....+|.|+|..+|..
T Consensus 106 i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 106 IKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888887754
No 469
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.08 E-value=30 Score=34.06 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 016220 100 KNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 100 KnlisMarEvEKLRaElana 119 (393)
||+....+|+|+-|.-..++
T Consensus 134 k~Y~~acke~E~A~~k~~ka 153 (252)
T cd07675 134 KKFERECREAEKAQQSYERL 153 (252)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445555555544444433
No 470
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=45.08 E-value=92 Score=29.68 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhhHHHHHH
Q 016220 67 WSKNAITFHLCRGTYEYEKKFYNDHLESLQV 97 (393)
Q Consensus 67 id~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ 97 (393)
+..|+.-++++..+|+-|.|.++|..+.+|.
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~ 66 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQS 66 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666655555555443
No 471
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.05 E-value=1.1e+02 Score=31.34 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.++.+|.|..-.-|+.+-+|+++||.+.
T Consensus 182 ~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 182 QELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888764
No 472
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=44.87 E-value=25 Score=29.68 Aligned_cols=12 Identities=0% Similarity=-0.219 Sum_probs=2.4
Q ss_pred HHHHHHHHHHHh
Q 016220 65 KIWSKNAITFHL 76 (393)
Q Consensus 65 ~Eid~lrqElqr 76 (393)
+|+..|++|+..
T Consensus 6 ~~~~~l~~~~~~ 17 (144)
T PF04350_consen 6 AQIQQLQQELAQ 17 (144)
T ss_dssp ------HHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 473
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.74 E-value=1.3e+02 Score=29.42 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHH---HHhhhhhhhhhhccchhhHH-HHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAIT---FHLCRGTYEYEKKFYNDHLE-SLQVMEKNYITMATEVEK 111 (393)
Q Consensus 61 ~~l~~Eid~lrqE---lqr~R~a~EyEKK~~~e~~E-q~q~MEKnlisMarEvEK 111 (393)
.+|-.|+..|++| |++-|+.+--||....++++ +++.||.+-+..-+|-+.
T Consensus 48 ~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq 102 (228)
T PRK06800 48 KSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQE 102 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544 44567777777777777664 677777776655544443
No 474
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=44.72 E-value=31 Score=27.88 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
|+.+|+.|++||.++|..+-
T Consensus 70 l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 70 LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67788888888888776653
No 475
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.70 E-value=58 Score=37.55 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=46.5
Q ss_pred hhhhcc-ccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHH----------hhhhhhhhhhccchhhHHHHHHHH
Q 016220 31 KALHFG-HPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFH----------LCRGTYEYEKKFYNDHLESLQVME 99 (393)
Q Consensus 31 k~~h~~-h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElq----------r~R~a~EyEKK~~~e~~Eq~q~ME 99 (393)
.++||+ -.|.+|+ ++|..+|+.-.-+ +..|+.+++.|+-+|- .++-+++--.+-..-.+.+-+.++
T Consensus 674 e~lkQ~~~~l~~e~-eeL~~~vq~~~s~--hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~ 750 (970)
T KOG0946|consen 674 ENLKQMEKELQVEN-EELEEEVQDFISE--HSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHH
Confidence 346665 4466666 3455554443333 3446666666666665 334444433344445566667777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016220 100 KNYITMATEVEKLRAELM 117 (393)
Q Consensus 100 KnlisMarEvEKLRaEla 117 (393)
.+..-...|++|--+.+.
T Consensus 751 ~~q~~l~~~L~k~~~~~e 768 (970)
T KOG0946|consen 751 NDQELLTKELNKKNADIE 768 (970)
T ss_pred HHHHHHHHHHHhhhHHHH
Confidence 777777777755444443
No 476
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=44.63 E-value=64 Score=36.18 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=13.2
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHh
Q 016220 93 ESLQVMEKN---YITMATEVEKLRAELM 117 (393)
Q Consensus 93 Eq~q~MEKn---lisMarEvEKLRaEla 117 (393)
|.|++||.- --.+.+|-|.||-.-.
T Consensus 678 eRM~ve~eRr~eqeRihreReelRrqqe 705 (940)
T KOG4661|consen 678 ERMKVEEERRDEQERIHREREELRRQQE 705 (940)
T ss_pred HHHHHHHhhcchhhhhhhhHHHHhhccc
Confidence 446666532 2234566677765543
No 477
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=44.59 E-value=40 Score=35.95 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016220 99 EKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 99 EKnlisMarEvEKLRaElan 118 (393)
|+|++.-|.-+|+++..|.+
T Consensus 121 ~~~~~~Aa~~L~~~~~~L~~ 140 (593)
T PF06248_consen 121 EGNYLDAADLLEELKSLLDD 140 (593)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 45677777777777777765
No 478
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=44.57 E-value=1.3e+02 Score=32.60 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=7.0
Q ss_pred hHHHHHHHHhHH
Q 016220 48 YYFLHLAFQHCY 59 (393)
Q Consensus 48 ~~~~~~~~~~~~ 59 (393)
..+|++..+|++
T Consensus 484 ~~ei~~~~~~~~ 495 (595)
T PRK01433 484 KTEIDIMLENAY 495 (595)
T ss_pred HHHHHHHHHHHH
Confidence 345666666654
No 479
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.57 E-value=1.5e+02 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 92 LESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
-++++.++|.+-.+--|+.-|+.+
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQ 159 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 480
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=44.55 E-value=18 Score=39.01 Aligned_cols=17 Identities=0% Similarity=-0.140 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhhhhh
Q 016220 66 IWSKNAITFHLCRGTYE 82 (393)
Q Consensus 66 Eid~lrqElqr~R~a~E 82 (393)
+||.|++||+.+.+..+
T Consensus 32 kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 56666666655554443
No 481
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=44.44 E-value=21 Score=32.63 Aligned_cols=25 Identities=12% Similarity=-0.185 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~Ey 83 (393)
+|..|..|||.|++|+.++|...++
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888888766554
No 482
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=44.44 E-value=19 Score=38.34 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=29.6
Q ss_pred cccccccCCCchhHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhhhhhh
Q 016220 36 GHPWICESSSPQYYFLHLAFQHC-YCAIFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 36 ~h~l~~e~~~~~~~~~~~~~~~~-~~~~l~~Eid~lrqElqr~R~a~E 82 (393)
+|+-.-|||. . --++|-| +|+.|+.|||+||++|.-+++-.|
T Consensus 400 v~pprperqQ--~---ppG~qGCpRC~~LQkEIedLreQLaamqsl~~ 442 (445)
T PF15483_consen 400 VHPPRPERQQ--Q---PPGAQGCPRCLVLQKEIEDLREQLAAMQSLAD 442 (445)
T ss_pred CCCCCccccc--C---CCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677642 1 1345554 689999999999999988776543
No 483
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.44 E-value=86 Score=33.17 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHH-----HhhhhhhhhhhccchhhHHHH----HHHHHHHHHHH
Q 016220 63 FLKIWSKNAITF-----HLCRGTYEYEKKFYNDHLESL----QVMEKNYITMA 106 (393)
Q Consensus 63 l~~Eid~lrqEl-----qr~R~a~EyEKK~~~e~~Eq~----q~MEKnlisMa 106 (393)
|+.+|...++|+ +..+..++-|+.++..+|+.+ +.||+-+....
T Consensus 346 l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 346 LKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555 345778888888887777654 55666555544
No 484
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.40 E-value=74 Score=30.99 Aligned_cols=16 Identities=0% Similarity=0.007 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhhhhhh
Q 016220 67 WSKNAITFHLCRGTYE 82 (393)
Q Consensus 67 id~lrqElqr~R~a~E 82 (393)
|+..+++|+++...+.
T Consensus 167 l~~~~~~L~~l~~~l~ 182 (319)
T PF02601_consen 167 LQRKRQRLNQLAKRLQ 182 (319)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444443333
No 485
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=44.40 E-value=85 Score=34.93 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
++.+++.++++|+++|. ++.....+++++.+-+||-++.+++.+|..+..
T Consensus 297 ~~~~~~~l~~sl~~l~~-----~~~~~~~~~~l~~l~~nl~~i~~~l~~~~~~~~ 346 (701)
T TIGR01667 297 TERALEKQIAALEKIRQ-----NQAPDDLLGQLGYLLDNLQSIDWQLARIARVLA 346 (701)
T ss_pred HHHHHHHHHHHHHHHHH-----cCCcchHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35667777777766553 233344688999999999999988888776653
No 486
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=44.36 E-value=1e+02 Score=30.39 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 016220 68 SKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 68 d~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~~~ 124 (393)
+.+++||.+.|.-.-|=++.-.+...-.+.+|+........+|||+.-|.....+++
T Consensus 48 ~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~~l~~L~~tv~~rtAVPt 104 (281)
T PF12018_consen 48 ELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEAQLEKLKETVKSRTAVPT 104 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 335666666665555555555566666666777788888888888887766544443
No 487
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=44.36 E-value=94 Score=29.64 Aligned_cols=67 Identities=16% Similarity=0.069 Sum_probs=0.0
Q ss_pred cccCCCchhHHHHHHHHhHHHHHH--HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 40 ICESSSPQYYFLHLAFQHCYCAIF--LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 40 ~~e~~~~~~~~~~~~~~~~~~~~l--~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|.++...+.+.-..=+.+|+...| ..++..|++||+-++ +.......||+.|-+|-.|+++.++|.+
T Consensus 34 i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----------~~~~~k~~qe~eI~~Le~e~~~~~~e~~ 102 (206)
T PF14988_consen 34 IQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-----------EFRRLKEQQEREIQTLEEELEKMRAEHA 102 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=44.34 E-value=72 Score=31.26 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
=+..+|++|..++...|-|+..-...|+.-+++-.-+-.+|+|--.|+.||+|
T Consensus 175 Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie~ 227 (238)
T PF14735_consen 175 ALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIEN 227 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHH
Confidence 34567777777777778888777778888888889999999999999999987
No 489
>PRK12704 phosphodiesterase; Provisional
Probab=44.26 E-value=1.3e+02 Score=32.51 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016220 97 VMEKNYITMATEVEKLRA 114 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRa 114 (393)
.++++|-.+-.|+++|+.
T Consensus 121 ~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 121 QKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 490
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=44.23 E-value=1.3e+02 Score=25.49 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=5.1
Q ss_pred chhhHHHHHHHH
Q 016220 88 YNDHLESLQVME 99 (393)
Q Consensus 88 ~~e~~Eq~q~ME 99 (393)
..+..++.+..+
T Consensus 38 ~~d~~D~a~~~~ 49 (110)
T TIGR02420 38 FPDPADRATQEE 49 (110)
T ss_pred CCCHhHHHHHHH
Confidence 344444444433
No 491
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=44.21 E-value=53 Score=28.15 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=0.0
Q ss_pred eeeeeeec--cch---hhhHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 016220 13 CTLIFTCT--LDF---LFRQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKF 87 (393)
Q Consensus 13 ~~~~~~~~--~d~---~~~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~ 87 (393)
|+|++++. +|. ++..+...+.++......++ .+...|+.-++++.+.+-..-++.|
T Consensus 92 ~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~--~~~~~i~~~~~~~g~~i~~~a~~~L----------------- 152 (172)
T PF06144_consen 92 CILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQ--ELPRWIKERAKKNGLKIDPDAAQYL----------------- 152 (172)
T ss_dssp EEEEEEES-S--HHHHHHHHHTTTEEEEEE----TT--THHHHHHHHHHHTT-EE-HHHHHHH-----------------
T ss_pred EEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHH--HHHHHHHHHHHHcCCCCCHHHHHHH-----------------
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 88 YNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 88 ~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
...++.|+..+.+|||||
T Consensus 153 -------~~~~~~d~~~l~~EleKL 170 (172)
T PF06144_consen 153 -------IERVGNDLSLLQNELEKL 170 (172)
T ss_dssp -------HHHHTT-HHHHHHHHHHH
T ss_pred -------HHHhChHHHHHHHHHHHh
No 492
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.11 E-value=87 Score=36.87 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM--ATEVEKLRAELMN 118 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM--arEvEKLRaElan 118 (393)
+|+..-.+|... ..+|+.|+.|++.++..++--++.-.++-.+.+.+..||-.+ -++++.|..+|.+
T Consensus 971 qL~~~e~el~~~--~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~ 1039 (1311)
T TIGR00606 971 YLKQKETELNTV--NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQ 1039 (1311)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.10 E-value=1.4e+02 Score=23.31 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhh----------hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYE----------YEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E----------yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
+.+||+.|..|+..+...|+ |-.|+-.+-+|.-+..-.++-..-.-|++--++|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 494
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.09 E-value=1.4e+02 Score=28.11 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVM----EKNYITMATEVEKLRAELM 117 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~M----EKnlisMarEvEKLRaEla 117 (393)
+|-.+++.+.+. -..|..||..|.+++.++|.-++.+....-+.-+....- .+.|+.|=+||.-||..++
T Consensus 85 lLReQLEq~~~~--N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~ 158 (182)
T PF15035_consen 85 LLREQLEQARKA--NEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFA 158 (182)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHH
No 495
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.05 E-value=77 Score=34.30 Aligned_cols=74 Identities=7% Similarity=-0.116 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 47 QYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+..+++...++|-+.+ |.++|+.|..++.....--+++.+.-.++.++++..++.|-..-.+-|+|-.+|+..+
T Consensus 557 ~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 557 QTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=44.02 E-value=34 Score=34.14 Aligned_cols=71 Identities=14% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCC
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEK---NYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEK---nlisMarEvEKLRaElanae 120 (393)
+|...--++.....+++++..+.+++.++..++-.|++..+.+=..+.+|+ +|...-.+++.++++|..++
T Consensus 91 ~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~ 164 (385)
T PRK09859 91 QIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQAT 164 (385)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG3228 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.98 E-value=40 Score=33.01 Aligned_cols=38 Identities=18% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
..|++||++++||-.+.++.-|.|+| ..|+.+-||.-|
T Consensus 129 ~aLlaele~ikkERaee~~~~e~e~k----~~e~r~r~e~il 166 (226)
T KOG3228|consen 129 QALLAELENIKKERAEEQARKEEEQK----AEEERIRMENIL 166 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHhhh
No 498
>PRK10722 hypothetical protein; Provisional
Probab=43.94 E-value=40 Score=33.58 Aligned_cols=68 Identities=15% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hhhhccccccccCCCchhHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 31 KALHFGHPWICESSSPQYYFLHLAFQHCYCAIF----LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 31 k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l----~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
.+.-.+|||++==-+.|+..|.++-.-.+-.-| -++||.|||..++++.-++ .-.+.||-+..+|.-|
T Consensus 138 ~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~----~t~rKLEnLTdIERqL 209 (247)
T PRK10722 138 QIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLE----LTTRKLENLTDIERQL 209 (247)
T ss_pred ccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
No 499
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=43.94 E-value=61 Score=31.78 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHH-------------HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 51 LHLAFQHCYCAIF-------------LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 51 ~~~~~~~~~~~~l-------------~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
++..-++.+.+|+ .++++.|..||++.+..|+-||+.....++|.-....|
T Consensus 54 f~~lk~~A~r~~~~~G~rFlgG~aVP~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~ 117 (257)
T PF11348_consen 54 FSKLKKRAERLCLKVGVRFLGGYAVPEDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWID 117 (257)
T ss_pred HHHHHHHHHHHHHHcCCcccceeEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=43.90 E-value=54 Score=27.49 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=0.0
Q ss_pred hHHhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 26 RQVYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLK----IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 26 ~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~----Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
.+.+.+.+..+...+..+ .....+++.+...+++..-+. +|..+.+|++.+|..||.-.....+.|..++.-.+.
T Consensus 86 ~~~~~~~~~~~~~~~k~~-~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~ 164 (194)
T cd07307 86 KEYLKKDLKEIKKRRKKL-DKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKE 164 (194)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HH
Q 016220 102 YI 103 (393)
Q Consensus 102 li 103 (393)
.+
T Consensus 165 ~~ 166 (194)
T cd07307 165 LF 166 (194)
T ss_pred HH
Done!