Query 016220
Match_columns 393
No_of_seqs 115 out of 130
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 09:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 94.1 0.096 3.3E-06 51.9 7.4 55 67-121 525-579 (597)
2 2w6b_A RHO guanine nucleotide 94.0 0.085 2.9E-06 40.4 5.2 39 60-98 12-50 (56)
3 2ke4_A CDC42-interacting prote 94.0 0.12 4E-06 42.9 6.5 62 57-118 14-80 (98)
4 3ol1_A Vimentin; structural ge 93.6 0.38 1.3E-05 40.5 9.1 55 47-110 25-79 (119)
5 3hnw_A Uncharacterized protein 92.9 0.2 7E-06 43.5 6.5 75 28-109 59-133 (138)
6 3swk_A Vimentin; cytoskeleton, 92.4 0.59 2E-05 37.6 8.2 53 46-107 4-56 (86)
7 1deq_A Fibrinogen (alpha chain 92.4 0.42 1.4E-05 48.2 8.8 46 72-117 113-158 (390)
8 3lay_A Zinc resistance-associa 92.3 0.44 1.5E-05 42.9 8.1 34 47-80 72-107 (175)
9 3ghg_A Fibrinogen alpha chain; 91.5 0.24 8.1E-06 51.8 6.1 54 64-117 101-155 (562)
10 2dfs_A Myosin-5A; myosin-V, in 90.3 0.3 1E-05 54.1 5.9 58 63-120 982-1043(1080)
11 3o0z_A RHO-associated protein 90.3 1.2 4E-05 40.4 8.7 72 48-119 43-116 (168)
12 2j69_A Bacterial dynamin-like 90.0 0.65 2.2E-05 48.5 7.8 92 26-118 590-690 (695)
13 3l4f_A RHO guanine nucleotide 89.0 0.66 2.2E-05 36.1 5.2 42 60-108 9-50 (61)
14 2fcw_A Alpha-2-macroglobulin r 88.7 1.8 6E-05 37.0 8.1 64 56-119 10-100 (109)
15 3mq9_A Bone marrow stromal ant 87.4 2.3 7.9E-05 41.2 9.2 54 63-117 402-467 (471)
16 1c1g_A Tropomyosin; contractIl 87.1 2.1 7.2E-05 36.1 7.7 22 95-116 78-99 (284)
17 3oja_A Leucine-rich immune mol 87.0 1.6 5.4E-05 42.6 7.9 20 64-83 380-399 (487)
18 2jee_A YIIU; FTSZ, septum, coi 86.6 2 7E-05 34.8 7.0 54 65-118 13-66 (81)
19 3oja_B Anopheles plasmodium-re 86.3 1.3 4.5E-05 43.8 7.0 47 72-118 523-569 (597)
20 3lay_A Zinc resistance-associa 85.4 2.1 7.3E-05 38.5 7.3 70 46-116 67-136 (175)
21 1wt6_A Myotonin-protein kinase 84.3 5.4 0.00018 32.5 8.4 45 60-118 26-70 (81)
22 3q8t_A Beclin-1; autophagy, AT 84.0 2.2 7.6E-05 34.8 6.2 29 89-117 21-49 (96)
23 4ioe_A Secreted protein ESXB; 83.6 5.7 0.00019 30.0 8.0 35 49-83 12-48 (93)
24 2ve7_A Kinetochore protein HEC 83.3 1.2 4.2E-05 42.7 5.1 41 59-102 186-226 (315)
25 3zbh_A ESXA; unknown function, 83.1 5.7 0.00019 30.0 7.8 32 50-81 13-46 (99)
26 1go4_E MAD1 (mitotic arrest de 81.8 8.7 0.0003 32.2 9.0 24 97-120 72-95 (100)
27 1f5n_A Interferon-induced guan 80.3 4.7 0.00016 42.0 8.5 60 52-111 488-548 (592)
28 3mq7_A Bone marrow stromal ant 80.0 8.7 0.0003 33.3 8.6 47 71-117 52-102 (121)
29 1go4_E MAD1 (mitotic arrest de 80.0 0.93 3.2E-05 38.0 2.6 20 100-119 63-87 (100)
30 3iv1_A Tumor susceptibility ge 79.8 13 0.00043 30.0 9.0 62 54-115 7-68 (78)
31 3s9g_A Protein hexim1; cyclin 79.6 5.6 0.00019 33.6 7.1 42 60-115 39-80 (104)
32 2vs0_A Virulence factor ESXA; 79.6 11 0.00038 28.3 8.3 72 50-121 10-88 (97)
33 3hnw_A Uncharacterized protein 79.6 7.6 0.00026 33.6 8.2 26 90-115 100-125 (138)
34 3vp9_A General transcriptional 79.5 1.3 4.5E-05 36.7 3.2 56 63-119 19-87 (92)
35 4gkw_A Spindle assembly abnorm 79.5 4.3 0.00015 36.2 6.7 69 37-118 3-71 (167)
36 3gwk_C SAG1039, putative uncha 79.4 13 0.00045 28.4 8.8 34 49-82 11-46 (98)
37 3qh9_A Liprin-beta-2; coiled-c 79.4 4.2 0.00014 33.1 6.1 36 82-118 44-79 (81)
38 2v0o_A FCHO2, FCH domain only 79.0 9.5 0.00033 34.0 9.0 50 65-114 101-157 (276)
39 1i84_S Smooth muscle myosin he 78.9 6 0.00021 43.8 9.2 25 63-87 883-907 (1184)
40 3m9b_A Proteasome-associated A 78.7 1.1 3.9E-05 42.7 3.0 20 98-117 73-92 (251)
41 1g6u_A Domain swapped dimer; d 78.7 3.6 0.00012 30.1 4.9 44 61-112 3-46 (48)
42 4dk0_A Putative MACA; alpha-ha 78.6 10 0.00034 35.2 9.3 48 39-88 60-107 (369)
43 1y1u_A Signal transducer and a 78.5 7 0.00024 41.1 9.1 31 52-82 29-60 (585)
44 3tnu_B Keratin, type II cytosk 78.3 4.6 0.00016 33.9 6.4 36 64-99 35-70 (129)
45 2efk_A CDC42-interacting prote 78.3 7.7 0.00026 35.0 8.3 18 65-82 116-133 (301)
46 2p01_A Alpha-2-macroglobulin r 77.4 6.9 0.00024 38.7 8.1 55 64-118 237-313 (323)
47 2eqb_B RAB guanine nucleotide 77.1 9 0.00031 32.0 7.6 10 109-118 85-94 (97)
48 2zvf_A Alanyl-tRNA synthetase; 77.0 4.4 0.00015 34.4 5.9 28 90-117 29-56 (171)
49 1i84_S Smooth muscle myosin he 76.4 1.9 6.5E-05 47.7 4.4 17 63-79 890-906 (1184)
50 2dfs_A Myosin-5A; myosin-V, in 76.3 7.3 0.00025 43.3 8.9 17 62-78 988-1004(1080)
51 1m1j_A Fibrinogen alpha subuni 75.7 12 0.0004 38.9 9.5 53 65-117 103-156 (491)
52 3ghg_A Fibrinogen alpha chain; 75.2 4.6 0.00016 42.4 6.5 36 47-82 120-155 (562)
53 3fpp_A Macrolide-specific effl 75.2 8.2 0.00028 35.5 7.7 73 46-120 66-148 (341)
54 3haj_A Human pacsin2 F-BAR; pa 74.9 5.6 0.00019 39.6 6.9 15 67-81 145-159 (486)
55 3na7_A HP0958; flagellar bioge 74.8 16 0.00055 33.5 9.5 29 90-118 87-115 (256)
56 3t98_B Nucleoporin NUP58/NUP45 74.2 7.8 0.00027 31.8 6.4 30 89-118 47-76 (93)
57 2f1m_A Acriflavine resistance 73.8 8.2 0.00028 34.5 7.1 41 39-81 50-90 (277)
58 3iv1_A Tumor susceptibility ge 73.8 15 0.0005 29.6 7.8 63 49-116 10-76 (78)
59 3tnu_A Keratin, type I cytoske 73.7 5.2 0.00018 33.7 5.5 26 64-89 37-62 (131)
60 3viq_A SWI5-dependent recombin 73.5 9.2 0.00031 32.7 7.0 36 60-95 9-44 (122)
61 3he5_B Synzip2; heterodimeric 73.0 5.5 0.00019 29.5 4.7 35 85-119 16-50 (52)
62 2efl_A Formin-binding protein 72.9 16 0.00053 32.9 8.8 16 100-115 144-159 (305)
63 2eqb_B RAB guanine nucleotide 72.8 5.2 0.00018 33.4 5.1 47 63-116 17-63 (97)
64 1ic2_A Tropomyosin alpha chain 72.6 12 0.00039 29.3 6.9 58 61-118 9-66 (81)
65 3swk_A Vimentin; cytoskeleton, 72.6 8.4 0.00029 30.8 6.2 18 96-113 66-83 (86)
66 3i00_A HIP-I, huntingtin-inter 72.6 14 0.00049 31.4 7.9 13 107-119 68-80 (120)
67 3fav_B ESAT-6, 6 kDa early sec 72.3 24 0.00082 26.7 8.5 66 51-118 10-77 (94)
68 3vkg_A Dynein heavy chain, cyt 72.3 1.7 5.9E-05 53.4 3.0 59 63-121 2012-2070(3245)
69 2jn6_A Protein CGL2762, transp 72.2 1.4 4.7E-05 34.0 1.5 31 62-92 63-93 (97)
70 1hjb_A Ccaat/enhancer binding 71.3 2.7 9.3E-05 34.2 3.1 18 63-80 55-72 (87)
71 2efl_A Formin-binding protein 71.1 18 0.00061 32.5 8.7 28 64-91 122-149 (305)
72 4i0x_B ESAT-6-like protein MAB 69.9 22 0.00076 27.9 8.1 37 48-84 13-53 (103)
73 1gu4_A CAAT/enhancer binding p 69.8 3 0.0001 33.3 2.9 22 60-81 52-73 (78)
74 3gee_A MNME, tRNA modification 69.5 7.6 0.00026 38.9 6.5 65 50-115 157-223 (476)
75 3na7_A HP0958; flagellar bioge 69.4 19 0.00065 33.0 8.6 54 64-117 31-84 (256)
76 2lq4_p Lysophosphatidic acid r 69.4 0.39 1.3E-05 38.1 -2.2 67 47-113 2-68 (80)
77 1nog_A Conserved hypothetical 68.3 4.6 0.00016 36.3 4.2 67 47-113 35-101 (177)
78 1m1j_C Fibrinogen gamma chain; 68.3 15 0.00053 36.9 8.4 27 93-119 105-131 (409)
79 3kqg_A Langerin, C-type lectin 67.9 5.9 0.0002 33.1 4.6 15 63-77 4-18 (182)
80 3nbx_X ATPase RAVA; AAA+ ATPas 67.5 6.8 0.00023 39.7 5.7 52 63-114 448-499 (500)
81 3u06_A Protein claret segregat 67.4 7 0.00024 38.9 5.7 24 94-117 32-55 (412)
82 3rkg_A Magnesium transporter M 66.6 25 0.00084 33.4 9.0 58 59-118 135-192 (261)
83 2p32_A Heat shock 70 kDa prote 66.6 9.2 0.00032 31.3 5.4 36 48-83 27-64 (120)
84 1naf_A ADP-ribosylation factor 66.0 22 0.00075 31.6 8.0 55 64-118 59-126 (158)
85 3t9o_A DGC, diguanylate cyclas 66.0 16 0.00056 30.6 6.9 57 64-121 73-130 (135)
86 3q8t_A Beclin-1; autophagy, AT 65.9 41 0.0014 27.3 9.1 54 60-113 34-94 (96)
87 1gl2_B Syntaxin 7; membrane pr 65.9 21 0.0007 26.8 6.7 32 90-121 34-65 (65)
88 2ocy_A RAB guanine nucleotide 65.9 14 0.00049 32.9 6.8 17 70-86 56-72 (154)
89 4ehp_B Catenin alpha-1; adhere 65.8 7.6 0.00026 33.1 4.8 58 55-116 54-111 (111)
90 2xdj_A Uncharacterized protein 65.6 10 0.00035 30.5 5.3 44 62-112 24-67 (83)
91 2e7s_A RAB guanine nucleotide 65.6 11 0.00036 33.2 5.8 39 70-115 44-82 (135)
92 1woz_A 177AA long conserved hy 65.3 5.5 0.00019 35.8 4.0 67 47-113 34-100 (177)
93 2efk_A CDC42-interacting prote 63.9 25 0.00086 31.6 8.2 19 100-118 137-155 (301)
94 3u1c_A Tropomyosin alpha-1 cha 63.8 28 0.00095 28.3 7.7 15 64-78 43-57 (101)
95 1x79_B RAB GTPase binding effe 63.6 9.8 0.00034 32.4 5.1 76 39-118 25-102 (112)
96 2cly_A ATP synthase B chain, m 63.0 17 0.00059 33.7 7.0 85 24-110 41-139 (214)
97 2dq0_A Seryl-tRNA synthetase; 62.6 26 0.00089 35.2 8.8 56 63-118 43-101 (455)
98 4etp_A Kinesin-like protein KA 62.5 9.4 0.00032 37.8 5.5 9 108-116 46-54 (403)
99 3iox_A AGI/II, PA; alpha helix 62.4 25 0.00085 36.6 8.7 49 48-96 31-79 (497)
100 1u2m_A Histone-like protein HL 61.9 1.4 4.9E-05 36.7 -0.4 7 17-23 5-11 (143)
101 3u59_A Tropomyosin beta chain; 61.8 32 0.0011 27.7 7.7 51 63-113 14-64 (101)
102 3he4_B Synzip5; heterodimeric 61.6 11 0.00037 27.4 4.2 23 64-86 19-41 (46)
103 3ni0_A Bone marrow stromal ant 61.1 63 0.0021 27.1 9.3 47 69-115 43-89 (99)
104 1e52_A Excinuclease ABC subuni 60.9 14 0.00049 28.3 5.1 42 62-105 21-62 (63)
105 3m9b_A Proteasome-associated A 60.8 9.7 0.00033 36.4 5.0 28 87-114 69-96 (251)
106 2d1l_A Metastasis suppressor p 60.1 17 0.00059 34.3 6.6 43 75-117 189-231 (253)
107 1z0k_B FYVE-finger-containing 60.0 13 0.00045 29.4 4.8 43 63-114 25-67 (69)
108 2wt7_A Proto-oncogene protein 59.9 14 0.00046 27.8 4.8 19 63-81 42-60 (63)
109 1ses_A Seryl-tRNA synthetase; 59.7 24 0.0008 35.1 7.8 56 62-117 39-95 (421)
110 3ehh_A Sensor kinase (YOCF pro 59.5 27 0.00092 29.0 7.1 13 70-82 39-51 (218)
111 1l8d_A DNA double-strand break 59.5 64 0.0022 25.6 9.0 24 94-117 79-102 (112)
112 2i1j_A Moesin; FERM, coiled-co 59.0 14 0.00049 38.1 6.4 38 82-119 324-361 (575)
113 3a2a_A Voltage-gated hydrogen 58.8 11 0.00038 28.9 4.1 33 85-117 17-49 (58)
114 1fzc_A Fibrin; blood coagulati 58.8 9.6 0.00033 31.4 4.0 42 76-117 4-45 (87)
115 3aco_A Pacsin2, protein kinase 58.1 9.8 0.00033 35.8 4.6 18 98-115 197-214 (350)
116 4g63_A Cytosolic IMP-GMP speci 57.6 50 0.0017 33.8 9.9 92 24-121 305-403 (470)
117 3qwe_A GMIP, GEM-interacting p 57.3 19 0.00066 34.5 6.5 62 18-80 77-155 (279)
118 2nps_B Syntaxin 13, vesicle-as 57.2 28 0.00094 26.4 6.2 34 89-122 30-63 (71)
119 4etp_A Kinesin-like protein KA 57.1 10 0.00034 37.6 4.6 16 62-77 21-36 (403)
120 4dci_A Uncharacterized protein 57.0 18 0.00063 32.0 5.8 16 6-21 7-22 (150)
121 2no2_A HIP-I, huntingtin-inter 56.8 84 0.0029 26.1 9.5 49 66-118 55-103 (107)
122 3pjs_K KCSA, voltage-gated pot 56.3 12 0.0004 32.2 4.4 21 63-83 143-163 (166)
123 1yzm_A FYVE-finger-containing 56.3 25 0.00087 26.3 5.6 44 63-115 7-50 (51)
124 1ik9_A DNA repair protein XRCC 55.9 30 0.001 31.8 7.3 20 63-82 144-163 (213)
125 3qne_A Seryl-tRNA synthetase, 55.9 43 0.0015 34.4 9.1 55 63-117 45-102 (485)
126 2wvr_A Geminin; DNA replicatio 55.8 26 0.0009 32.8 6.9 38 51-99 110-152 (209)
127 1gax_A Valrs, valyl-tRNA synth 55.6 18 0.00062 39.1 6.7 53 63-118 805-860 (862)
128 1r73_A TM1492, 50S ribosomal p 55.6 30 0.001 26.4 6.1 49 58-109 9-57 (66)
129 3s4r_A Vimentin; alpha-helix, 55.4 80 0.0028 25.4 9.0 16 100-115 77-92 (93)
130 3bas_A Myosin heavy chain, str 55.4 36 0.0012 27.1 6.8 21 64-84 13-33 (89)
131 2v4h_A NF-kappa-B essential mo 54.9 86 0.003 26.7 9.3 18 64-81 44-61 (110)
132 1uii_A Geminin; human, DNA rep 54.9 16 0.00055 29.8 4.7 31 49-79 39-74 (83)
133 1t3j_A Mitofusin 1; coiled coi 54.8 28 0.00095 29.0 6.2 16 63-78 52-67 (96)
134 2x3v_A Syndapin I, protein kin 54.6 35 0.0012 31.6 7.6 15 100-114 190-204 (337)
135 3haj_A Human pacsin2 F-BAR; pa 54.6 22 0.00074 35.4 6.6 57 63-119 134-197 (486)
136 2dq3_A Seryl-tRNA synthetase; 54.4 31 0.0011 34.2 7.6 56 62-117 41-99 (425)
137 3qfl_A MLA10; coiled-coil, (CC 54.4 73 0.0025 25.8 8.7 54 63-116 24-78 (115)
138 3fpp_A Macrolide-specific effl 54.1 61 0.0021 29.6 9.1 26 94-119 129-154 (341)
139 3ol1_A Vimentin; structural ge 53.7 43 0.0015 27.9 7.3 48 69-116 66-117 (119)
140 3v1a_A Computational design, M 52.9 28 0.00096 25.8 5.3 41 63-112 6-46 (48)
141 1lwu_B Fibrinogen beta chain; 52.8 13 0.00046 36.1 4.7 47 62-117 6-52 (323)
142 1lwu_A Fibrinogen alpha-1 chai 52.2 17 0.00059 31.4 4.7 43 75-117 25-67 (119)
143 1wle_A Seryl-tRNA synthetase; 52.1 45 0.0015 34.2 8.5 28 90-117 120-147 (501)
144 3bbo_Z Ribosomal protein L29; 52.0 10 0.00035 34.6 3.4 52 56-110 71-122 (173)
145 2vs0_A Virulence factor ESXA; 52.0 71 0.0024 23.7 8.1 34 85-118 59-92 (97)
146 1wt6_A Myotonin-protein kinase 51.9 12 0.0004 30.6 3.4 30 64-100 37-66 (81)
147 4g63_A Cytosolic IMP-GMP speci 51.8 5.1 0.00017 41.0 1.6 34 69-103 326-359 (470)
148 1n7s_B Syntaxin 1A; neuronal s 51.7 43 0.0015 25.1 6.4 32 89-120 36-67 (68)
149 2b5u_A Colicin E3; high resolu 51.7 38 0.0013 35.5 7.9 42 61-102 310-351 (551)
150 1lrz_A FEMA, factor essential 51.5 44 0.0015 32.3 8.1 49 63-112 252-300 (426)
151 2v4h_A NF-kappa-B essential mo 51.4 32 0.0011 29.4 6.1 43 69-111 66-108 (110)
152 4dnd_A Syntaxin-10, SYN10; str 51.4 70 0.0024 27.3 8.4 75 37-117 48-129 (130)
153 3ci3_A Cobalamin adenosyltrans 51.1 8.1 0.00028 35.2 2.7 66 47-112 43-115 (194)
154 3a7p_A Autophagy protein 16; c 51.1 65 0.0022 28.8 8.4 11 102-112 134-144 (152)
155 2i1j_A Moesin; FERM, coiled-co 51.0 17 0.00058 37.5 5.3 37 39-77 323-361 (575)
156 1l8d_A DNA double-strand break 50.9 91 0.0031 24.7 9.3 26 93-118 71-96 (112)
157 3fs3_A Nucleosome assembly pro 50.8 21 0.00073 35.5 5.8 47 30-78 29-76 (359)
158 1t2k_D Cyclic-AMP-dependent tr 50.7 23 0.00079 26.2 4.7 16 63-78 41-56 (61)
159 3ok8_A Brain-specific angiogen 50.4 13 0.00044 34.8 4.0 32 31-62 71-102 (222)
160 2ocy_A RAB guanine nucleotide 50.3 70 0.0024 28.5 8.5 24 93-116 72-95 (154)
161 3u06_A Protein claret segregat 50.2 26 0.00089 34.9 6.3 17 92-108 40-56 (412)
162 3l9d_A SMU.1046C, putative GTP 49.7 10 0.00035 35.8 3.2 36 49-84 199-236 (255)
163 1rty_A YVQK protein; all alpha 49.7 12 0.00041 34.1 3.5 66 47-112 36-107 (193)
164 3v2d_2 50S ribosomal protein L 49.7 37 0.0013 26.4 5.9 49 60-111 18-66 (72)
165 1joc_A EEA1, early endosomal a 49.6 22 0.00076 29.8 5.0 21 63-83 16-36 (125)
166 2v0o_A FCHO2, FCH domain only 49.0 76 0.0026 28.0 8.7 50 69-119 126-175 (276)
167 1vf7_A Multidrug resistance pr 49.0 29 0.001 32.7 6.2 54 63-120 86-139 (369)
168 1fxk_A Prefoldin; archaeal pro 49.0 21 0.00071 28.1 4.5 25 93-117 79-103 (107)
169 1ux5_A BNI1 protein; structura 48.9 21 0.00073 34.7 5.4 56 63-118 296-355 (411)
170 3a7p_A Autophagy protein 16; c 48.9 81 0.0028 28.2 8.6 19 94-112 111-129 (152)
171 2ykt_A Brain-specific angiogen 48.5 12 0.00039 35.2 3.3 14 40-53 82-95 (253)
172 3vkg_A Dynein heavy chain, cyt 48.5 49 0.0017 41.3 9.4 69 46-114 2011-2084(3245)
173 1vq8_V 50S ribosomal protein L 48.5 45 0.0015 25.8 6.1 48 58-109 12-61 (71)
174 2g2d_A ATP:cobalamin adenosylt 48.3 9.1 0.00031 34.8 2.5 66 46-112 41-114 (193)
175 1ud0_A HSC70, 70 kDa heat-shoc 48.1 28 0.00096 27.6 5.1 36 47-82 12-49 (113)
176 4emc_A Monopolin complex subun 48.1 33 0.0011 31.7 6.1 43 33-81 15-57 (190)
177 4ew8_A Sensor protein DIVL; si 47.9 65 0.0022 27.4 7.8 16 68-83 49-64 (268)
178 1m1j_B Fibrinogen beta chain; 47.8 53 0.0018 33.7 8.2 25 93-117 168-192 (464)
179 4dyl_A Tyrosine-protein kinase 47.7 51 0.0017 32.1 7.9 18 100-117 141-158 (406)
180 3hd7_B Syntaxin-1A; membrane p 47.7 41 0.0014 27.5 6.2 57 65-121 21-77 (109)
181 2jee_A YIIU; FTSZ, septum, coi 47.3 1.1E+02 0.0037 24.8 8.4 32 46-79 10-41 (81)
182 2nt8_A Cobalamin adenosyltrans 47.2 9.7 0.00033 35.5 2.6 67 46-112 71-144 (223)
183 2v71_A Nuclear distribution pr 47.0 39 0.0013 30.9 6.5 48 63-113 61-108 (189)
184 1h2v_C 80 kDa nuclear CAP bind 46.9 13 0.00045 39.9 3.9 51 63-113 636-691 (771)
185 1u2m_A Histone-like protein HL 46.9 26 0.00088 29.0 4.9 9 68-76 70-78 (143)
186 2q12_A DIP13 alpha, DCC-intera 46.9 66 0.0023 28.9 8.0 23 96-118 220-242 (265)
187 2j1d_G DAAM1, disheveled-assoc 46.9 23 0.00077 35.6 5.4 56 63-118 297-353 (483)
188 2r6a_C DNAG primase, helicase 46.7 59 0.002 25.7 6.9 55 48-118 88-142 (143)
189 3hls_A Guanylate cyclase solub 46.7 30 0.001 26.4 4.9 42 54-95 13-54 (66)
190 3kdq_A Uncharacterized conserv 46.7 65 0.0022 28.3 7.7 87 32-118 31-146 (154)
191 1jth_B Syntaxin 1A; coiled-coi 46.6 36 0.0012 26.0 5.3 34 90-123 35-68 (77)
192 4e61_A Protein BIM1; EB1-like 46.6 41 0.0014 28.4 6.1 18 63-80 16-33 (106)
193 1t2k_D Cyclic-AMP-dependent tr 46.4 23 0.0008 26.1 4.1 21 97-117 33-53 (61)
194 1ci6_A Transcription factor AT 46.4 35 0.0012 25.7 5.1 18 63-80 42-59 (63)
195 1m1j_B Fibrinogen beta chain; 46.4 50 0.0017 33.9 7.8 12 107-118 175-186 (464)
196 4dk0_A Putative MACA; alpha-ha 46.3 39 0.0013 31.2 6.6 20 64-83 76-95 (369)
197 3b5n_B Protein SSO1; snare com 46.3 29 0.00099 26.2 4.7 33 89-121 34-66 (69)
198 1sfc_B Protein (syntaxin 1A), 46.3 38 0.0013 26.4 5.5 36 89-124 45-80 (83)
199 2ah6_A BH1595, unknown conserv 46.3 14 0.00047 34.2 3.4 66 47-112 48-120 (208)
200 2zjr_V 50S ribosomal protein L 46.0 29 0.00099 26.6 4.7 47 60-109 11-57 (67)
201 3fav_A ESAT-6-like protein ESX 45.9 56 0.0019 25.1 6.4 59 63-121 26-89 (101)
202 3iz5_c 60S ribosomal protein L 45.8 70 0.0024 27.5 7.5 56 59-117 15-75 (124)
203 1s1c_X RHO-associated, coiled- 45.6 99 0.0034 24.4 7.8 31 46-78 3-33 (71)
204 3ktd_A Prephenate dehydrogenas 45.6 42 0.0014 32.2 6.8 40 63-102 252-291 (341)
205 3lof_A Heat shock 70 kDa prote 45.5 20 0.00069 28.7 4.0 38 47-84 17-56 (113)
206 2pms_C Pneumococcal surface pr 45.5 1E+02 0.0036 26.7 8.5 72 47-119 49-122 (125)
207 3h6p_C ESAT-6-like protein ESX 45.2 37 0.0013 26.0 5.3 24 63-86 25-48 (96)
208 1nlw_A MAD protein, MAX dimeri 45.1 41 0.0014 26.4 5.5 11 106-116 67-77 (80)
209 3eff_K Voltage-gated potassium 45.1 17 0.0006 29.9 3.6 23 96-118 114-136 (139)
210 2p22_A Suppressor protein STP2 45.0 26 0.00087 31.7 4.9 22 93-114 63-84 (174)
211 2zxx_A Geminin; coiled-coil, c 44.8 41 0.0014 27.1 5.5 43 50-98 28-70 (79)
212 4i0x_A ESAT-6-like protein MAB 44.4 1.1E+02 0.0036 23.6 8.5 66 51-118 5-72 (94)
213 4dzn_A Coiled-coil peptide CC- 44.1 20 0.00068 24.5 3.0 14 62-75 6-19 (33)
214 1wvt_A Hypothetical protein ST 44.1 9.1 0.00031 34.3 1.8 47 62-110 49-95 (172)
215 2wt7_B Transcription factor MA 43.7 25 0.00085 28.9 4.2 21 97-117 66-86 (90)
216 1jnm_A Proto-oncogene C-JUN; B 43.3 26 0.0009 26.0 4.0 20 61-80 39-58 (62)
217 1gd2_E Transcription factor PA 43.2 19 0.00066 28.1 3.3 13 50-62 18-30 (70)
218 1joc_A EEA1, early endosomal a 43.1 72 0.0025 26.6 7.1 20 62-81 22-41 (125)
219 2v71_A Nuclear distribution pr 43.0 46 0.0016 30.5 6.3 19 63-81 93-111 (189)
220 3q0x_A Centriole protein; cent 43.0 63 0.0022 30.3 7.4 55 13-79 137-192 (228)
221 3ibp_A Chromosome partition pr 42.8 42 0.0014 32.9 6.3 30 66-95 42-71 (302)
222 2f1m_A Acriflavine resistance 42.6 32 0.0011 30.6 5.2 57 60-116 62-121 (277)
223 3ghg_C Fibrinogen gamma chain; 42.5 1E+02 0.0036 31.1 9.3 16 102-117 114-129 (411)
224 1deq_A Fibrinogen (alpha chain 42.4 53 0.0018 33.2 7.2 17 105-121 139-155 (390)
225 2ve7_C Kinetochore protein NUF 42.4 22 0.00075 33.2 4.2 50 62-118 152-201 (250)
226 2zhy_A ATP:COB(I)alamin adenos 42.3 11 0.00037 34.0 2.1 55 47-102 42-96 (183)
227 3sja_C Golgi to ER traffic pro 42.2 38 0.0013 26.4 4.8 48 62-118 10-57 (65)
228 3lnn_A Membrane fusion protein 41.8 35 0.0012 31.5 5.5 52 62-117 102-153 (359)
229 2idx_A COB(I)yrinic acid A,C-d 41.7 9.1 0.00031 34.9 1.4 64 47-111 38-112 (196)
230 3ke4_A Hypothetical cytosolic 41.4 14 0.00047 34.4 2.6 63 47-109 56-123 (213)
231 3s4r_A Vimentin; alpha-helix, 41.2 34 0.0012 27.6 4.7 8 65-72 56-63 (93)
232 1zbt_A RF-1, peptide chain rel 41.2 7.2 0.00025 39.0 0.8 20 98-117 92-111 (371)
233 3i2w_A Syndapin, LD46328P; EFC 41.1 15 0.00051 33.4 2.8 22 93-114 121-142 (290)
234 4akg_A Glutathione S-transfera 41.0 22 0.00074 43.4 4.8 30 9-38 2112-2142(2695)
235 1r9d_A Glycerol dehydratase; r 40.9 44 0.0015 36.2 6.7 58 63-120 173-233 (787)
236 1nkp_B MAX protein, MYC proto- 40.9 37 0.0013 26.2 4.7 27 93-119 54-80 (83)
237 3fxb_A Trap dicarboxylate tran 40.9 82 0.0028 29.3 7.9 13 109-121 314-326 (326)
238 3r8s_Y 50S ribosomal protein L 40.7 22 0.00076 26.9 3.3 44 60-106 11-54 (63)
239 3lss_A Seryl-tRNA synthetase; 40.7 92 0.0032 31.9 8.8 26 92-117 109-135 (484)
240 4a17_U RPL35, 60S ribosomal pr 40.5 86 0.0029 27.0 7.3 58 59-118 14-76 (124)
241 3sjb_C Golgi to ER traffic pro 40.4 36 0.0012 28.3 4.7 48 62-118 27-74 (93)
242 1lwu_C Fibrinogen gamma chain; 40.2 56 0.0019 31.9 6.8 15 100-114 40-54 (323)
243 3vmx_A Voltage-gated hydrogen 40.2 35 0.0012 25.4 4.1 30 88-117 13-42 (48)
244 1ek9_A Outer membrane protein 40.0 1.6E+02 0.0054 26.9 9.5 57 63-119 126-185 (428)
245 3efg_A Protein SLYX homolog; x 40.0 54 0.0018 25.9 5.5 16 48-63 18-33 (78)
246 2pih_A Protein YMCA; regulate 39.9 1.1E+02 0.0039 26.1 8.0 39 39-79 19-61 (151)
247 3d2f_A Heat shock protein homo 39.8 40 0.0014 35.2 6.1 45 64-108 577-626 (675)
248 1gvn_A Epsilon; postsegregatio 39.6 13 0.00044 30.8 1.9 58 14-71 4-70 (90)
249 3kqg_A Langerin, C-type lectin 39.3 24 0.00083 29.4 3.6 19 63-81 21-39 (182)
250 1nkp_B MAX protein, MYC proto- 39.2 58 0.002 25.1 5.5 19 98-116 52-70 (83)
251 3ter_A Mammalian stromal inter 39.2 59 0.002 28.6 6.1 35 77-114 39-73 (136)
252 1uix_A RHO-associated kinase; 39.0 1.4E+02 0.0049 23.6 7.8 30 47-78 2-31 (71)
253 3myf_A Sensor protein; HPT, hi 38.9 74 0.0025 25.9 6.4 62 54-117 36-110 (119)
254 3zbh_A ESXA; unknown function, 38.8 1.2E+02 0.0041 22.6 9.3 69 49-117 19-94 (99)
255 1wlq_A Geminin; coiled-coil; 2 38.8 40 0.0014 27.5 4.6 25 50-76 32-56 (83)
256 2aze_A Transcription factor DP 38.7 54 0.0018 29.4 5.9 46 65-111 5-50 (155)
257 1xzp_A Probable tRNA modificat 38.6 81 0.0028 31.6 7.9 50 63-114 181-232 (482)
258 2nrj_A HBL B protein; enteroto 38.4 90 0.0031 30.2 8.0 69 51-119 121-195 (346)
259 3qwe_A GMIP, GEM-interacting p 38.2 31 0.0011 33.1 4.6 51 65-115 101-155 (279)
260 2f23_A Anti-cleavage anti-GREA 38.2 51 0.0018 28.3 5.6 56 63-124 22-77 (156)
261 2yfa_A MCPS, methyl-accepting 38.1 1.1E+02 0.0039 26.4 7.9 20 64-83 78-97 (258)
262 2x3v_A Syndapin I, protein kin 38.0 1.5E+02 0.0051 27.3 9.1 7 101-107 223-229 (337)
263 4e29_A Chimeric WZZB chain len 37.7 61 0.0021 30.5 6.4 32 63-94 126-157 (248)
264 4dyl_A Tyrosine-protein kinase 37.6 76 0.0026 30.9 7.3 53 64-118 329-391 (406)
265 1cxz_B Protein (PKN); protein- 37.6 51 0.0017 26.9 5.1 24 94-117 57-80 (86)
266 3htk_A Structural maintenance 37.5 1.1E+02 0.0037 22.0 6.4 20 97-116 37-56 (60)
267 3oja_A Leucine-rich immune mol 37.4 1.9E+02 0.0064 28.0 10.1 31 67-97 419-449 (487)
268 1gd2_E Transcription factor PA 37.3 80 0.0027 24.6 6.0 7 107-113 50-56 (70)
269 2o6n_A RH4B designed peptide; 37.0 47 0.0016 22.9 4.1 12 63-74 22-33 (35)
270 3hhm_B NISH2 P85alpha; PI3KCA, 36.8 1.4E+02 0.0048 29.4 9.1 21 63-83 145-165 (373)
271 4aj5_K Spindle and kinetochore 36.5 87 0.003 27.2 6.6 49 61-112 46-97 (123)
272 1t72_A Phosphate transport sys 36.1 97 0.0033 26.6 7.1 12 101-112 86-97 (227)
273 3j21_W 50S ribosomal protein L 36.0 91 0.0031 24.2 6.1 48 59-109 10-58 (72)
274 3htk_A Structural maintenance 35.9 65 0.0022 23.2 5.1 19 99-117 32-50 (60)
275 4ioe_A Secreted protein ESXB; 35.6 56 0.0019 24.3 4.9 26 93-118 63-88 (93)
276 4b4t_L 26S protease subunit RP 35.6 30 0.001 34.6 4.2 26 93-118 72-97 (437)
277 1wy1_A Hypothetical protein PH 35.4 26 0.00087 31.3 3.3 37 47-84 37-73 (172)
278 1dh3_A Transcription factor CR 35.4 27 0.00092 25.8 2.9 19 98-116 34-52 (55)
279 1cxz_B Protein (PKN); protein- 35.3 39 0.0013 27.6 4.1 57 48-114 24-84 (86)
280 1m1j_C Fibrinogen gamma chain; 35.2 95 0.0032 31.2 7.7 22 95-116 114-135 (409)
281 1bg1_A Protein (transcription 35.1 63 0.0022 34.2 6.6 30 96-125 89-118 (596)
282 1use_A VAsp, vasodilator-stimu 35.1 58 0.002 23.9 4.5 11 66-76 31-41 (45)
283 3obv_E Protein diaphanous homo 35.0 29 0.00098 34.9 4.0 20 63-82 286-305 (457)
284 1vcs_A Vesicle transport throu 34.9 1.8E+02 0.0061 23.5 8.0 51 66-118 42-92 (102)
285 2yy0_A C-MYC-binding protein; 34.7 32 0.0011 25.4 3.2 14 65-78 19-32 (53)
286 2p4w_A Transcriptional regulat 34.4 97 0.0033 27.5 7.0 26 92-117 157-182 (202)
287 1v9d_A Diaphanous protein homo 34.4 20 0.00069 34.1 2.6 20 63-82 215-234 (340)
288 3vlc_E Golgi to ER traffic pro 34.3 28 0.00095 29.0 3.1 49 61-118 33-81 (94)
289 1xm8_A Glyoxalase II; structur 34.3 27 0.00091 31.4 3.3 50 66-115 188-250 (254)
290 1use_A VAsp, vasodilator-stimu 34.2 41 0.0014 24.7 3.6 8 110-117 33-40 (45)
291 4dzn_A Coiled-coil peptide CC- 34.2 69 0.0024 21.8 4.5 18 61-78 12-29 (33)
292 3m48_A General control protein 34.2 43 0.0015 23.2 3.5 25 57-81 6-30 (33)
293 2dq0_A Seryl-tRNA synthetase; 33.9 1.1E+02 0.0036 30.9 7.8 60 60-119 47-109 (455)
294 2be3_A GTP pyrophosphokinase; 33.8 21 0.00073 32.7 2.6 22 62-83 185-206 (226)
295 2qyw_A Vesicle transport throu 33.7 1.7E+02 0.0058 23.6 7.7 50 65-116 52-101 (102)
296 3l4f_A RHO guanine nucleotide 33.5 73 0.0025 24.7 5.1 16 92-107 30-45 (61)
297 2wt7_A Proto-oncogene protein 33.5 45 0.0016 24.9 3.9 9 106-114 50-58 (63)
298 1gax_A Valrs, valyl-tRNA synth 32.6 93 0.0032 33.7 7.7 19 63-81 798-816 (862)
299 1s94_A S-syntaxin; three helix 32.4 57 0.002 28.0 5.0 16 93-108 81-96 (180)
300 1jnm_A Proto-oncogene C-JUN; B 32.4 54 0.0018 24.3 4.2 24 96-119 32-55 (62)
301 1qp6_A Protein (alpha2D); de n 32.3 18 0.0006 25.0 1.3 28 50-77 5-32 (35)
302 1vyh_C Platelet-activating fac 32.3 9.5 0.00032 35.1 0.0 34 38-74 1-35 (410)
303 1zme_C Proline utilization tra 32.2 50 0.0017 23.8 3.9 23 95-117 46-68 (70)
304 3ggo_A Prephenate dehydrogenas 31.9 89 0.003 29.1 6.5 26 60-85 270-295 (314)
305 3abh_A Pacsin2, protein kinase 31.9 1.1E+02 0.0039 27.8 7.1 19 98-116 162-180 (312)
306 2lw1_A ABC transporter ATP-bin 31.4 1.9E+02 0.0064 22.6 8.6 64 44-112 13-82 (89)
307 3geh_A MNME, tRNA modification 31.0 48 0.0016 33.0 4.8 60 51-112 150-211 (462)
308 1qvr_A CLPB protein; coiled co 30.9 79 0.0027 33.4 6.6 25 62-86 434-458 (854)
309 2no2_A HIP-I, huntingtin-inter 30.7 1.5E+02 0.0051 24.5 7.0 38 63-100 59-96 (107)
310 1i2h_A PSD-ZIP45(homer-1C/VESL 30.3 21 0.00072 32.1 1.9 32 4-43 55-86 (168)
311 1z0j_B FYVE-finger-containing 30.2 1E+02 0.0036 23.6 5.4 43 63-114 14-56 (59)
312 3p8q_A GP5, head protein; viru 30.1 11 0.00037 36.4 0.0 10 108-117 49-58 (385)
313 3mq9_A Bone marrow stromal ant 30.0 61 0.0021 31.3 5.2 22 93-114 450-471 (471)
314 1wmi_B RELB, hypothetical prot 29.9 46 0.0016 26.1 3.5 24 63-86 9-32 (67)
315 1ei7_A Coat protein; disordere 29.9 65 0.0022 29.0 5.0 36 42-77 98-135 (158)
316 1oxz_A ADP-ribosylation factor 29.9 1.2E+02 0.0041 27.5 6.8 56 63-118 74-142 (186)
317 4efa_E V-type proton ATPase su 29.8 98 0.0034 27.7 6.2 61 26-86 10-74 (233)
318 1gk4_A Vimentin; intermediate 29.7 1.1E+02 0.0038 23.9 5.8 20 63-82 31-50 (84)
319 2ej8_A DCC-interacting protein 29.7 13 0.00046 31.9 0.5 44 33-76 116-160 (160)
320 4gkw_A Spindle assembly abnorm 29.6 3E+02 0.01 24.5 9.8 18 64-81 59-76 (167)
321 2wg5_A General control protein 29.6 38 0.0013 27.8 3.2 17 63-79 19-35 (109)
322 2j5u_A MREC protein; bacterial 29.4 49 0.0017 30.7 4.3 17 104-120 47-63 (255)
323 1g8x_A Myosin II heavy chain f 29.4 31 0.0011 38.1 3.4 17 47-63 852-868 (1010)
324 1ij5_A Plasmodial specific LAV 29.3 1.3E+02 0.0045 27.9 7.2 14 63-76 17-30 (323)
325 1x79_B RAB GTPase binding effe 29.3 2.6E+02 0.0089 23.7 8.3 32 85-116 44-75 (112)
326 3viq_B Mating-type switching p 29.2 61 0.0021 26.4 4.2 22 60-81 10-31 (85)
327 1wrd_A TOM1, target of MYB pro 29.1 98 0.0034 25.2 5.6 24 86-109 43-66 (103)
328 2fup_A Hypothetical protein PA 29.0 1.3E+02 0.0043 24.8 6.3 36 33-73 26-61 (157)
329 1nlw_A MAD protein, MAX dimeri 28.8 1.2E+02 0.0042 23.6 5.9 25 93-117 47-71 (80)
330 3hho_A CO-chaperone protein HS 28.8 1.4E+02 0.0047 26.0 6.8 16 102-117 158-173 (174)
331 2yy0_A C-MYC-binding protein; 28.8 76 0.0026 23.4 4.4 21 61-81 22-42 (53)
332 2v5d_A O-GLCNACASE NAGJ; famil 28.7 1.8E+02 0.0062 30.8 8.9 46 49-94 469-520 (737)
333 2dq3_A Seryl-tRNA synthetase; 28.7 1.2E+02 0.0042 29.9 7.2 61 60-120 46-109 (425)
334 2w83_C C-JUN-amino-terminal ki 28.6 89 0.003 25.2 5.0 41 39-81 14-60 (77)
335 2wuj_A Septum site-determining 28.5 58 0.002 24.0 3.7 31 47-79 25-55 (57)
336 1ez3_A Syntaxin-1A; three heli 28.5 1.4E+02 0.0047 23.9 6.3 65 47-115 48-117 (127)
337 1s94_A S-syntaxin; three helix 28.3 2.4E+02 0.0081 24.1 8.2 70 47-120 79-153 (180)
338 2gd5_A Charged multivesicular 28.3 1.6E+02 0.0054 25.6 7.1 69 49-117 17-88 (179)
339 2oto_A M protein; helical coil 28.1 2.2E+02 0.0075 24.2 7.9 22 38-60 26-47 (155)
340 4gfh_A DNA topoisomerase 2; to 27.9 1.3E+02 0.0043 34.2 7.9 47 64-115 1126-1172(1177)
341 3hho_A CO-chaperone protein HS 27.8 2E+02 0.0068 25.0 7.7 12 23-34 67-78 (174)
342 2jvf_A De novo protein M7; tet 27.8 72 0.0025 26.0 4.4 49 48-112 28-76 (96)
343 3jsv_C NF-kappa-B essential mo 27.7 70 0.0024 26.6 4.4 38 77-114 52-89 (94)
344 4igg_A Catenin alpha-1; asymme 27.6 70 0.0024 34.9 5.7 57 59-119 248-304 (832)
345 3jsv_C NF-kappa-B essential mo 27.6 65 0.0022 26.8 4.2 27 91-117 7-33 (94)
346 3lnn_A Membrane fusion protein 27.5 2.1E+02 0.0071 26.3 8.2 21 97-117 140-160 (359)
347 2oxj_A Hybrid alpha/beta pepti 27.4 69 0.0024 22.3 3.6 24 57-80 7-30 (34)
348 1ykh_B RNA polymerase II holoe 27.4 1.9E+02 0.0066 24.5 7.3 29 90-118 96-124 (132)
349 1eh1_A Ribosome recycling fact 27.4 1.9E+02 0.0065 26.1 7.6 66 38-108 105-174 (185)
350 1yke_B RNA polymerase II holoe 27.3 1.7E+02 0.0057 25.6 7.0 29 90-118 96-124 (151)
351 2oeq_A Protein of unknown func 27.3 1.8E+02 0.0061 23.7 6.9 38 39-78 18-59 (122)
352 3i00_A HIP-I, huntingtin-inter 27.1 35 0.0012 29.0 2.6 16 47-62 27-42 (120)
353 3sjb_C Golgi to ER traffic pro 27.1 47 0.0016 27.5 3.3 20 63-82 61-80 (93)
354 4h22_A Leucine-rich repeat fli 27.0 2.7E+02 0.0093 23.4 7.9 65 39-120 21-85 (103)
355 3pxg_A Negative regulator of g 26.9 1E+02 0.0035 30.1 6.3 46 66-113 395-440 (468)
356 4dmb_A HD domain-containing pr 26.9 64 0.0022 29.4 4.5 57 63-119 117-197 (204)
357 2asw_A Hypothetical protein AF 26.8 1.2E+02 0.0041 19.0 5.1 20 93-112 35-54 (56)
358 2v66_B Nuclear distribution pr 26.7 1.7E+02 0.0057 24.8 6.7 54 63-117 40-101 (111)
359 1am9_A Srebp-1A, protein (ster 26.6 94 0.0032 24.2 4.8 33 50-82 20-74 (82)
360 4dac_A Computationally designe 26.5 60 0.002 21.5 3.0 21 98-118 6-26 (28)
361 3csx_A Putative uncharacterize 26.5 92 0.0032 25.2 4.8 58 50-121 16-78 (81)
362 1yc9_A VCEC, multidrug resista 26.5 3.4E+02 0.012 25.0 9.5 59 63-121 164-225 (442)
363 4e61_A Protein BIM1; EB1-like 26.3 1.8E+02 0.0062 24.5 6.8 15 62-76 22-36 (106)
364 3nmd_A CGMP dependent protein 26.3 98 0.0034 24.6 4.8 25 95-119 42-66 (72)
365 1wle_A Seryl-tRNA synthetase; 26.1 1.8E+02 0.0062 29.8 8.1 24 90-113 127-150 (501)
366 3vem_A Helicase protein MOM1; 26.0 74 0.0025 27.3 4.4 11 45-55 35-45 (115)
367 2inr_A DNA topoisomerase 4 sub 26.0 70 0.0024 33.3 5.1 48 64-118 453-500 (514)
368 1grj_A GREA protein; transcrip 25.9 95 0.0032 26.8 5.2 59 64-123 8-76 (158)
369 3bbp_D GRIP and coiled-coil do 25.9 27 0.00092 27.8 1.5 26 60-85 45-70 (71)
370 4e81_A Chaperone protein DNAK; 25.9 68 0.0023 29.0 4.5 14 48-61 121-134 (219)
371 1ik9_A DNA repair protein XRCC 25.9 1.5E+02 0.005 27.2 6.7 41 63-103 137-177 (213)
372 2nov_A DNA topoisomerase 4 sub 25.8 75 0.0026 32.9 5.2 48 64-118 429-476 (496)
373 4fla_A Regulation of nuclear P 25.7 3.3E+02 0.011 23.7 9.4 45 47-91 73-119 (152)
374 3d5a_X RF1, peptide chain rele 25.7 1.9E+02 0.0063 28.8 7.8 16 100-115 76-91 (354)
375 2qtf_A Protein HFLX, GTP-bindi 25.6 1.5E+02 0.005 28.4 6.9 54 61-114 103-165 (364)
376 1sum_B Phosphate transport sys 25.6 2.1E+02 0.0071 25.0 7.5 10 103-112 84-93 (235)
377 3d5k_A OPRM, outer membrane pr 25.6 3.3E+02 0.011 25.6 9.3 57 63-119 178-237 (474)
378 2gd5_A Charged multivesicular 25.5 2.5E+02 0.0087 24.3 7.9 23 92-114 70-92 (179)
379 2i0m_A Phosphate transport sys 25.5 2.3E+02 0.0079 24.1 7.6 25 90-114 40-64 (216)
380 2zkr_v 60S ribosomal protein L 25.4 1E+02 0.0036 26.4 5.3 47 59-109 13-61 (123)
381 3b8m_A Ferric enterobactin (en 25.4 98 0.0034 29.1 5.6 16 14-29 122-137 (280)
382 1a93_B MAX protein, coiled coi 25.3 39 0.0013 23.5 2.1 19 81-99 16-34 (34)
383 3qne_A Seryl-tRNA synthetase, 25.2 46 0.0016 34.2 3.5 58 61-118 50-110 (485)
384 2wuj_A Septum site-determining 25.1 76 0.0026 23.4 3.8 25 96-120 30-54 (57)
385 3ajw_A Flagellar FLIJ protein; 25.0 1E+02 0.0035 25.0 5.0 39 62-100 78-116 (150)
386 1ysm_A Calcyclin-binding prote 24.9 90 0.0031 24.7 4.5 41 67-119 5-45 (77)
387 3fx0_A NF-kappa-B essential mo 24.8 3.8 0.00013 34.3 -3.6 12 66-77 18-29 (96)
388 4dnd_A Syntaxin-10, SYN10; str 24.8 2.2E+02 0.0076 24.1 7.2 13 90-102 85-97 (130)
389 3twe_A Alpha4H; unknown functi 24.7 60 0.002 21.3 2.8 17 63-79 6-22 (27)
390 1hlo_A Protein (transcription 24.7 68 0.0023 24.6 3.7 29 50-78 26-77 (80)
391 3ilw_A DNA gyrase subunit A; D 24.5 84 0.0029 32.4 5.3 48 64-118 415-462 (470)
392 3gwk_C SAG1039, putative uncha 24.5 2.2E+02 0.0077 21.3 8.8 69 49-117 18-93 (98)
393 3cvf_A Homer-3, homer protein 24.4 2.7E+02 0.0093 22.2 8.5 72 37-118 2-73 (79)
394 1no4_A Late, head morphogenesi 24.2 81 0.0028 25.9 4.1 23 94-116 27-56 (97)
395 2ch7_A Methyl-accepting chemot 24.2 1.8E+02 0.0061 26.0 6.9 15 47-61 178-192 (309)
396 2fic_A Bridging integrator 1; 24.1 2.3E+02 0.008 25.0 7.6 12 71-82 185-196 (251)
397 1dh3_A Transcription factor CR 23.6 70 0.0024 23.5 3.4 24 58-81 29-52 (55)
398 1y8o_A [pyruvate dehydrogenase 23.6 1.3E+02 0.0045 28.7 6.2 20 63-82 90-109 (419)
399 3m91_A Proteasome-associated A 23.5 91 0.0031 23.1 3.9 34 85-118 15-48 (51)
400 1uuj_A Platelet-activating fac 23.4 76 0.0026 25.9 3.9 34 38-74 3-37 (88)
401 2fxo_A Myosin heavy chain, car 23.4 2.8E+02 0.0097 23.0 7.5 39 74-112 85-123 (129)
402 3rx6_A Polarity suppression pr 23.4 2.1E+02 0.007 26.5 7.1 57 49-112 4-65 (190)
403 4b6x_A AVRRPS4, avirulence pro 23.3 3E+02 0.01 22.6 7.3 47 66-115 37-84 (90)
404 2d1l_A Metastasis suppressor p 23.3 1.9E+02 0.0065 27.3 7.1 16 65-80 131-146 (253)
405 3ghg_B Fibrinogen beta chain; 23.3 1.4E+02 0.0048 30.8 6.6 29 90-118 160-188 (461)
406 3iox_A AGI/II, PA; alpha helix 23.3 2E+02 0.0067 30.0 7.7 7 338-344 477-483 (497)
407 1got_G GT-gamma; complex (GTP- 23.3 47 0.0016 26.1 2.5 18 101-118 18-35 (73)
408 1bf5_A Signal transducer and a 23.3 1.3E+02 0.0045 31.7 6.5 27 49-75 16-43 (575)
409 3mq7_A Bone marrow stromal ant 23.2 1.2E+02 0.0042 26.2 5.2 25 95-119 87-111 (121)
410 3uo3_A J-type CO-chaperone JAC 23.2 1.1E+02 0.0036 27.1 5.1 34 28-61 38-71 (181)
411 2j5u_A MREC protein; bacterial 23.2 62 0.0021 30.0 3.7 16 67-82 45-60 (255)
412 1wqg_A Ribosome recycling fact 23.1 1.9E+02 0.0065 26.1 6.8 38 38-76 104-141 (185)
413 1is1_A Ribosome recycling fact 23.1 2.1E+02 0.007 25.9 7.0 66 38-108 104-173 (185)
414 3pik_A Cation efflux system pr 23.0 4.2E+02 0.014 24.3 9.3 58 63-120 169-229 (446)
415 2r9i_A Putative phage capsid p 23.0 2.1E+02 0.007 25.0 6.6 50 63-117 9-58 (141)
416 1uo4_A General control protein 22.9 88 0.003 21.8 3.5 25 57-81 7-31 (34)
417 3i9w_A Sensor protein TORS; st 22.9 1.8E+02 0.0061 28.0 6.9 57 66-122 78-135 (290)
418 1hjb_A Ccaat/enhancer binding 22.9 1.7E+02 0.0059 23.6 5.8 15 104-118 61-75 (87)
419 2w2u_A Hypothetical P60 katani 22.8 2.7E+02 0.0093 21.7 8.2 65 46-115 11-82 (83)
420 1xwm_A PHOU, phosphate uptake 22.8 2E+02 0.0067 24.6 6.6 14 101-114 82-95 (217)
421 2xcs_B DNA gyrase subunit B, D 22.7 85 0.0029 33.8 5.1 48 64-118 636-683 (692)
422 3u65_B TP33 protein; tetratric 22.6 2.1E+02 0.0073 26.7 7.4 10 109-118 316-325 (328)
423 4fla_A Regulation of nuclear P 22.4 3.9E+02 0.013 23.3 9.3 13 48-60 24-36 (152)
424 2y8n_A 4-hydroxyphenylacetate 22.4 1.5E+02 0.0053 32.7 7.1 59 63-121 232-297 (897)
425 3m0d_C TNF receptor-associated 22.3 99 0.0034 23.3 4.1 19 98-116 18-36 (65)
426 3c3f_A Alpha/beta peptide with 22.2 1E+02 0.0034 21.5 3.6 23 58-80 8-30 (34)
427 2dgc_A Protein (GCN4); basic d 22.0 77 0.0026 23.9 3.4 19 99-117 43-61 (63)
428 1fpo_A HSC20, chaperone protei 21.8 3.6E+02 0.012 23.3 8.1 11 24-34 65-75 (171)
429 3w03_C DNA repair protein XRCC 21.8 1.3E+02 0.0045 27.4 5.5 38 52-96 140-183 (184)
430 1yc9_A VCEC, multidrug resista 21.7 3.8E+02 0.013 24.7 8.8 24 96-119 409-432 (442)
431 1deb_A APC protein, adenomatou 21.6 1.3E+02 0.0046 22.7 4.5 39 59-97 11-52 (54)
432 2c5k_T Syntaxin TLG1, T-snare 21.6 1.5E+02 0.005 24.0 5.2 50 64-117 42-92 (95)
433 3mud_A DNA repair protein XRCC 21.6 1.2E+02 0.0041 27.6 5.1 12 63-74 140-151 (175)
434 2q12_A DIP13 alpha, DCC-intera 21.5 1.2E+02 0.0042 27.1 5.3 27 92-118 230-256 (265)
435 3u5e_h 60S ribosomal protein L 21.5 1.8E+02 0.0062 24.8 6.0 52 60-116 14-70 (120)
436 3b1f_A Putative prephenate deh 21.4 2.4E+02 0.0082 24.9 7.1 21 63-83 249-269 (290)
437 3oa7_A Head morphogenesis prot 21.4 84 0.0029 29.4 4.1 27 92-118 29-62 (206)
438 1ses_A Seryl-tRNA synthetase; 21.4 88 0.003 31.0 4.6 57 61-118 45-103 (421)
439 3g67_A Methyl-accepting chemot 21.3 2.7E+02 0.0091 25.3 7.5 12 47-58 124-135 (213)
440 2p4v_A Transcription elongatio 21.1 2.2E+02 0.0075 24.5 6.6 20 105-124 58-77 (158)
441 1ef1_C Moesin; membrane, FERM 20.8 53 0.0018 26.9 2.4 35 57-94 25-59 (90)
442 3mwu_A Calmodulin-domain prote 20.8 3E+02 0.01 26.2 8.0 31 72-102 331-361 (486)
443 2efr_A General control protein 20.8 4.4E+02 0.015 23.3 9.1 71 46-116 74-149 (155)
444 3g67_A Methyl-accepting chemot 20.7 4.7E+02 0.016 23.6 9.2 8 55-62 118-125 (213)
445 2f3o_A PFLD, PFL2, pyruvate fo 20.7 1.4E+02 0.0049 32.2 6.3 59 62-120 163-224 (776)
446 1zme_C Proline utilization tra 20.7 84 0.0029 22.5 3.3 22 61-82 47-68 (70)
447 3ghg_B Fibrinogen beta chain; 20.6 3.5E+02 0.012 27.9 8.8 27 88-114 161-187 (461)
448 1z0k_B FYVE-finger-containing 20.5 53 0.0018 25.9 2.2 41 37-78 23-66 (69)
449 2b3t_B RF-1, peptide chain rel 20.5 42 0.0014 33.4 2.1 23 99-121 71-94 (360)
450 1rq0_A RF-1, peptide chain rel 20.5 1.9E+02 0.0066 28.6 6.7 43 66-113 38-80 (342)
451 1ci6_A Transcription factor AT 20.4 1.2E+02 0.004 22.7 4.1 8 107-114 51-58 (63)
452 1m1j_A Fibrinogen alpha subuni 20.4 1.1E+02 0.0039 31.7 5.2 20 63-82 137-156 (491)
453 1ise_A Ribosome recycling fact 20.4 2.3E+02 0.0077 25.6 6.7 38 38-76 104-141 (185)
454 2p4v_A Transcription elongatio 20.3 1.6E+02 0.0056 25.3 5.6 48 72-121 31-79 (158)
455 2lf0_A Uncharacterized protein 20.2 1.3E+02 0.0045 26.1 4.8 16 63-78 8-23 (123)
456 2ke4_A CDC42-interacting prote 20.1 1.7E+02 0.006 23.9 5.4 72 46-122 19-91 (98)
457 3nyv_A Calmodulin-domain prote 20.1 1.5E+02 0.0052 28.0 5.8 48 54-101 312-364 (484)
458 1nkp_A C-MYC, MYC proto-oncoge 20.1 1.4E+02 0.0047 23.7 4.7 32 51-82 47-83 (88)
459 3onj_A T-snare VTI1; helix, HA 20.0 2.8E+02 0.0094 22.1 6.5 54 65-118 37-91 (97)
460 1yvl_A Signal transducer and a 20.0 2E+02 0.0067 31.0 7.2 14 106-119 221-234 (683)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.15 E-value=0.096 Score=51.91 Aligned_cols=55 Identities=7% Similarity=-0.101 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 67 WSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 67 id~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
++.++++++.....++..|+-..+.-.+.+.|++.+..+.+|++++++||...+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444555566667778888899999999999998875543
No 2
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=94.04 E-value=0.085 Score=40.36 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVM 98 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~M 98 (393)
+..|+-|+..|+||.+++..++|-|.|++-++-+=..-|
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999875543333333
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=93.97 E-value=0.12 Score=42.87 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhh---hhhhhhhhccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 57 HCYCAIFLKIWSKNAITFHLC---RGTYEYEKKFYNDHLES--LQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~---R~a~EyEKK~~~e~~Eq--~q~MEKnlisMarEvEKLRaElan 118 (393)
|-+|-.|++.|+.|++||++. |.+++-=++.+.++-.- -..+|.-|+.++.+|++|++||-+
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K 80 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999998765 44444333332222111 122266777788888888887643
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.62 E-value=0.38 Score=40.47 Aligned_cols=55 Identities=11% Similarity=-0.090 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 110 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvE 110 (393)
|..+|..+++| ++.|..||++++.++...|.-+|-|... ++.+|.+|+.+-+.|+
T Consensus 25 LR~qid~~~~e--~a~l~leldn~~~~~edfk~KyE~E~~~-------r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 25 LRRQVDQLTND--KARVEVERDNLAEDIMRLREKLQEEMLQ-------REEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHhhhccc
Confidence 55567777777 7788999999999999999888877543 4555665555544443
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.88 E-value=0.2 Score=43.46 Aligned_cols=75 Identities=12% Similarity=-0.041 Sum_probs=46.4
Q ss_pred HhhhhhhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 016220 28 VYSKALHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT 107 (393)
Q Consensus 28 ~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar 107 (393)
+|.-+|.|.|.|...+. ..-.+ -+++ .-+..||..|++||..++..+|--+|-..++.++.+.++++++.+-.
T Consensus 59 aVLaALNiadEl~k~~~--~~~~L---~~~l--~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 59 TDMMYLNIADDYFKAKK--MADSL---SLDI--ENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666554442 12222 2221 12477888888888888888888888777777777777776665533
Q ss_pred HH
Q 016220 108 EV 109 (393)
Q Consensus 108 Ev 109 (393)
|+
T Consensus 132 ~~ 133 (138)
T 3hnw_A 132 EL 133 (138)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 6
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.44 E-value=0.59 Score=37.57 Aligned_cols=53 Identities=9% Similarity=-0.152 Sum_probs=41.1
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT 107 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar 107 (393)
.|..+|..++.| ++.|..|||+++..+...|.-||-|-.. ++.+|..++.+-+
T Consensus 4 eLr~qi~~l~~e--~~~l~~e~dn~~~~~edfk~KyE~E~~~-------R~~~E~d~~~Lrk 56 (86)
T 3swk_A 4 ELRRQVDQLTND--KARVEVERDNLAEDIMRLREKLQEEMLQ-------REEAENTLQSFRQ 56 (86)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 477788888888 8999999999999999999999988554 4555555554443
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=92.39 E-value=0.42 Score=48.16 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 72 ITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 72 qElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|....||.-|+|=|+.-.+++.++++|++||.....||.||...|.
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888889999999999999999999999988874
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=92.29 E-value=0.44 Score=42.93 Aligned_cols=34 Identities=6% Similarity=0.036 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhh
Q 016220 47 QYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a 80 (393)
|.-+|+.-+++.++.+ |+.+|..+|+||+.+-.+
T Consensus 72 Qq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 72 QQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA 107 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444433332 567777777777766554
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.49 E-value=0.24 Score=51.80 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHH-hhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 64 LKIWSKNAITFH-LCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 64 ~~Eid~lrqElq-r~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..+.|+...||- .||..|+|=|..=.+++.+++++++||..+..||.||..+|.
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777 788888887777788889999999999999999999988764
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.31 E-value=0.3 Score=54.05 Aligned_cols=58 Identities=7% Similarity=-0.094 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchh---hHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYND---HLESL-QVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e---~~Eq~-q~MEKnlisMarEvEKLRaElanae 120 (393)
++++++.|.+|+..+|..++-..|.+.+ ..+|+ +.|+..+-+|..|.+|||.++.+.+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443333322 22222 3667788888899999998876654
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.29 E-value=1.2 Score=40.44 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=57.4
Q ss_pred hHHHHHHHHhHH--HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 48 YYFLHLAFQHCY--CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 48 ~~~~~~~~~~~~--~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
...++..+.||+ +..|..+.+.|.+|+..+.++++-||....---|-...||--+-++-.||+.|+.-+..+
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555644 444899999999999999999999999888888878888888999999999888765543
No 12
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=89.95 E-value=0.65 Score=48.51 Aligned_cols=92 Identities=10% Similarity=0.052 Sum_probs=62.7
Q ss_pred hHHhhhhhhcc-cc-ccccCCCchhHHHHHHHHhHHHHH-------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHH
Q 016220 26 RQVYSKALHFG-HP-WICESSSPQYYFLHLAFQHCYCAI-------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQ 96 (393)
Q Consensus 26 ~~~~~k~~h~~-h~-l~~e~~~~~~~~~~~~~~~~~~~~-------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q 96 (393)
++..-|++++. -+ |=+.|+ .+.-.|+.+++||-... |...|+.+|+||+++..-.+-.++---+.++++|
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 668 (695)
T 2j69_A 590 RRELVKTAKKELVKHLPQVAH-EQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLK 668 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33334444443 22 445554 46645555555543332 7899999999999999988888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 016220 97 VMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElan 118 (393)
.+|.++.....+||..=.+|.+
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~ 690 (695)
T 2j69_A 669 NLQEDVIAQLQKIEAAYSNLLA 690 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 9888888777777665555554
No 13
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=89.03 E-value=0.66 Score=36.07 Aligned_cols=42 Identities=10% Similarity=-0.053 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarE 108 (393)
+..|+-|+..|+||.++...++|.|.|. ++.+||.+-.|...
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqra-------Rk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRA-------RKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 4678999999999999999999999875 56677777666654
No 14
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=88.72 E-value=1.8 Score=36.98 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=41.6
Q ss_pred HhHHHHHH-----HHHHHHHHHHHHhhhhhhh------------hhhccchhh----------HHHHHHHHHHHHHHHHH
Q 016220 56 QHCYCAIF-----LKIWSKNAITFHLCRGTYE------------YEKKFYNDH----------LESLQVMEKNYITMATE 108 (393)
Q Consensus 56 ~~~~~~~l-----~~Eid~lrqElqr~R~a~E------------yEKK~~~e~----------~Eq~q~MEKnlisMarE 108 (393)
|+|-+.++ ..||+.||.||.|.-+-++ -||....+. -|-.+.||.++--+.+-
T Consensus 10 q~LW~lA~~~NFT~~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~k 89 (109)
T 2fcw_A 10 IDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYT 89 (109)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 44444444 5677777777766433332 123222222 35578999999999999
Q ss_pred HHHHHHHHhcC
Q 016220 109 VEKLRAELMNA 119 (393)
Q Consensus 109 vEKLRaElana 119 (393)
|+||+.+|.+.
T Consensus 90 V~Kl~~dl~~r 100 (109)
T 2fcw_A 90 VKKHLQDLSGR 100 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999753
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.39 E-value=2.3 Score=41.24 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhhhh------------hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTY------------EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~------------EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|+..|+++|+-++.+|+.- -+|||.-- .+...|.+|.-+-.+-.||+.+||||.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-GQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555421 23444332 334566777777777777888888775
No 16
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.08 E-value=2.1 Score=36.12 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016220 95 LQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLRaEl 116 (393)
...++..+-.+...++.|..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ 99 (284)
T 1c1g_A 78 ATDAEADVASLNRRIQLFEEEL 99 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.96 E-value=1.6 Score=42.57 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~Ey 83 (393)
+.+++.+++|++..-..+|.
T Consensus 380 ~~~~~~~~~~~~~~~~~~e~ 399 (487)
T 3oja_A 380 RRAHAELDGTLQQAVGQIEL 399 (487)
T ss_dssp HHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHhhhhhhHHHhhchhhh
Confidence 55556666667776666664
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.59 E-value=2 Score=34.82 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+-|+.+-..|+.++.-||-.|-.|..+.++.+....+--.+.+|+++|+.|..+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334444444555555555555667777788888888888899999999999875
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.32 E-value=1.3 Score=43.84 Aligned_cols=47 Identities=17% Similarity=0.044 Sum_probs=23.9
Q ss_pred HHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 72 ITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 72 qElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.|+|+.+.+++-+++...++-++...||+.+-.|-..++.|+.|+++
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33344444444333333333344445666666666666666666654
No 20
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=85.44 E-value=2.1 Score=38.49 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=40.1
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.||.+=+.-+++|.+. .+.++..||+++.-.|..+.-+-....-.-++.+++.+.+..+-.+++++|.+.
T Consensus 67 nLT~EQq~ql~~I~~e-~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 67 PLTTEQQATAQKIYDD-YYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp -CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777776543 456777788888888876665543222223444455555555544554444443
No 21
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=84.34 E-value=5.4 Score=32.49 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|.+|..||..+|-.++.+- + ++|.-|+..-.+..||++|+.++..
T Consensus 26 KQ~i~EELs~vr~~ni~~e------s--------kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFA------S--------QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655554433 2 3444555555555566666665543
No 22
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.04 E-value=2.2 Score=34.83 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.+++++++.+||+=-.++.||+.|++|+.
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777764
No 23
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=83.60 E-value=5.7 Score=29.97 Aligned_cols=35 Identities=9% Similarity=-0.150 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhh
Q 016220 49 YFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 49 ~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~Ey 83 (393)
-+|+.+.++|+... |..+|+.|+.++..+....+=
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G 48 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAG 48 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 45666666666555 788888888888888765544
No 24
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=83.28 E-value=1.2 Score=42.73 Aligned_cols=41 Identities=7% Similarity=-0.108 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
++..|.+|++.|++|+++++..++-.+|.+.+.++ .|+|++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~---~Lqk~~ 226 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKANAERLK---RLQKSA 226 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHH
Confidence 56779999999999999999988888887655544 456665
No 25
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=83.09 E-value=5.7 Score=30.03 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=19.1
Q ss_pred HHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhh
Q 016220 50 FLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 50 ~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~ 81 (393)
+|+.+.++|.... |+.+|+.|++++..+....
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W 46 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTLQGIW 46 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555554444 6677777777777765543
No 26
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=81.75 E-value=8.7 Score=32.16 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 97 VMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElanae 120 (393)
.-++.+-.+-.|+|+||.-|...+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677788888888777654
No 27
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=80.32 E-value=4.7 Score=42.00 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHH-HHHHHHHHHHHHHH
Q 016220 52 HLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQV-MEKNYITMATEVEK 111 (393)
Q Consensus 52 ~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~-MEKnlisMarEvEK 111 (393)
+++.+..|+...++|.+.|+|-....-..+|-.+|.+-|++.|++. ||+..-.+-+|.|+
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~ 548 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 548 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666667666666666777788888888888766 77666666555553
No 28
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.04 E-value=8.7 Score=33.29 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHhhhhhhhhhhccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 71 AITFHLCRGTYEYEKKFY----NDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 71 rqElqr~R~a~EyEKK~~----~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.+-..-+|..++-||.-- -|+-...+.+...|-..--|||+||.+..
T Consensus 52 NqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 52 NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344556677777777663 23333444455556666667788887754
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.04 E-value=0.93 Score=38.00 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=15.1
Q ss_pred HHHHHHH-----HHHHHHHHHHhcC
Q 016220 100 KNYITMA-----TEVEKLRAELMNA 119 (393)
Q Consensus 100 KnlisMa-----rEvEKLRaElana 119 (393)
+|..++| .+||||++|+...
T Consensus 63 ~NPa~~a~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 63 LNPTSVARQRLREDHSQLQAECERL 87 (100)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 7899999999754
No 30
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=79.76 E-value=13 Score=30.00 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=41.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 54 AFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 54 ~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
|..|--+.-|+++++..+-||+-+|.+=+-=|++...+-+=++.|+..-..|-.+|+.|+..
T Consensus 7 AVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443344566677777777777777766666777776677777777777777777777654
No 31
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=79.61 E-value=5.6 Score=33.63 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+..|...++.|..|..|+|.. .+..-..+..++.|||+||+|
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~--------------~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLE--------------SKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hccchhhHHHHHHHHHHHHHH
Confidence 445677788888888888765 111134455566777777776
No 32
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=79.61 E-value=11 Score=28.30 Aligned_cols=72 Identities=6% Similarity=-0.043 Sum_probs=41.8
Q ss_pred HHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhcc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 50 FLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKF-----YNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 50 ~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~-----~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
+|+.+.++|+... |+.+|+.|++++..+....+=+-.. ..+....++.|...|..++.+|.+--.....++.
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~ 88 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQ 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444 6778888888888876543322211 1244455566667777777777777666666554
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.58 E-value=7.6 Score=33.59 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+.-++....+|.+-..-+|+..|+-+
T Consensus 100 ~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 100 AAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433333
No 34
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=79.46 E-value=1.3 Score=36.67 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhhh--hhhhhccchhhHHHHH-------HHHHHHHHHHH----HHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGT--YEYEKKFYNDHLESLQ-------VMEKNYITMAT----EVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a--~EyEKK~~~e~~Eq~q-------~MEKnlisMar----EvEKLRaElana 119 (393)
||+|.|.|-+|....|.- =|||.|.+. ++-.|| .||.+-..|-. ||-.||.||.+.
T Consensus 19 ir~Efe~~~~e~~~~k~q~~~eyE~ki~~-Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 19 IRQEFLQVSQEANTYRLQNQKDYDFKMNQ-QLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp TTTTTTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578888888887666543 378888543 333333 34555555554 899999999863
No 35
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=79.46 E-value=4.3 Score=36.22 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=39.9
Q ss_pred ccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 37 HPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 37 h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|+|+.|.- -.-.+++.-+ .+|..|+|..+.||.-.=..++.|. +++ .| |.|-=+.--+||-|||||+
T Consensus 3 ~~laE~K~-~~ia~L~~D~-----~s~~~eleEnqeEL~iVgkML~EEq-gKV---DQ---lqKRn~~HQKEi~~Lrae~ 69 (167)
T 4gkw_A 3 HMLVEDKE-DEVADLKQDT-----ESLQKQLEENQEELEIVGNMLREEQ-GKV---DQ---LQKRNVAHQKEIGKLRAEL 69 (167)
T ss_dssp ----CCSS-SSHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HH---HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-hhH---HH---HHHhccHHHHHHHHHHHHH
Confidence 67776663 3444444333 4467788888888877777776654 223 33 3344455567999999997
Q ss_pred hc
Q 016220 117 MN 118 (393)
Q Consensus 117 an 118 (393)
..
T Consensus 70 ~~ 71 (167)
T 4gkw_A 70 GT 71 (167)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 36
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=79.44 E-value=13 Score=28.37 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhh
Q 016220 49 YFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 49 ~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~E 82 (393)
-+|+.+.++|+... |..+|+.|++++..+....+
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~ 46 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 34556666655554 67788888888887765443
No 37
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=79.42 E-value=4.2 Score=33.11 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=27.5
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 82 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 82 EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-||||..+-. |.+..+.+-|-.=-.||+.|+.||..
T Consensus 44 QyEkKLKsTK-~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 44 QYEWKLKATK-AEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhH-HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 4888888766 66666777776667799999999863
No 38
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=78.99 E-value=9.5 Score=33.95 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhhhhhh-h---ccchhhHHHHHHHH---HHHHHHHHHHHHHHH
Q 016220 65 KIWSKNAITFHLCRGTYEYE-K---KFYNDHLESLQVME---KNYITMATEVEKLRA 114 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyE-K---K~~~e~~Eq~q~ME---KnlisMarEvEKLRa 114 (393)
.+|..++.|+.+.|..+.-| + |...+..++.+.|+ +++....+|+|++|.
T Consensus 101 ~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~ 157 (276)
T 2v0o_A 101 KEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKK 157 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555332 1 22223333333333 466667777776664
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.89 E-value=6 Score=43.77 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKF 87 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~ 87 (393)
|..+++.|++|+..++..++-|++.
T Consensus 883 le~~l~~Le~e~~~l~~~L~~e~~~ 907 (1184)
T 1i84_S 883 LEQKHTQLCEEKNLLQEKLQAETEL 907 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444443
No 40
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=78.70 E-value=1.1 Score=42.71 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016220 98 MEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEla 117 (393)
++..|-..-+||++|+.||.
T Consensus 73 L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666664
No 41
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=78.68 E-value=3.6 Score=30.10 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+.|+.|++.|++|= |.-|.-+ .+--.+|++||+|..+...++-|
T Consensus 3 aalkselqalkkeg------fspeela--aleselqalekklaalksklqal 46 (48)
T 1g6u_A 3 AALKSELQALKKEG------FSPEELA--ALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHTT------CSHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC------CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777776652 2222111 12235789999998887766554
No 42
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=78.58 E-value=10 Score=35.20 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=25.7
Q ss_pred ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFY 88 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~ 88 (393)
|++=....+..+|..+-.+ ...++++|+.++.++..++..++-.|++.
T Consensus 60 L~~ld~~~~~~~l~~~~a~--l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 107 (369)
T 4dk0_A 60 LAEIDSTTQINTLNTRKAA--LASYQAQLVARKTAYDVALSNYQRLSKLY 107 (369)
T ss_dssp CEECCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTTTHHHHHHGG
T ss_pred EEEEcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333 33456677777777777776666655543
No 43
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=78.53 E-value=7 Score=41.12 Aligned_cols=31 Identities=0% Similarity=-0.239 Sum_probs=19.2
Q ss_pred HHHHHhHHHHH-HHHHHHHHHHHHHhhhhhhh
Q 016220 52 HLAFQHCYCAI-FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 52 ~~~~~~~~~~~-l~~Eid~lrqElqr~R~a~E 82 (393)
+..-+|+|+.. +++|.+-.-||+++.++.++
T Consensus 29 q~~e~~~k~Le~~Qe~F~~~y~~~~~~~~~~~ 60 (585)
T 1y1u_A 29 QDTENELKKLQQTQEYFIIQYQESLRIQAQFA 60 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHh
Confidence 33444555543 46666666788888876665
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.31 E-value=4.6 Score=33.90 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVME 99 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ME 99 (393)
+.||-.||.-||+++.-|+-=|+.+..+-.++..+|
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566666666666666666665555554444444444
No 45
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=78.27 E-value=7.7 Score=35.01 Aligned_cols=18 Identities=6% Similarity=-0.153 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 016220 65 KIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~E 82 (393)
.+++.++++++.....++
T Consensus 116 ~~~~k~~k~~~~~~~~l~ 133 (301)
T 2efk_A 116 QEGRRAQQQLENGFKQLE 133 (301)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444443333333
No 46
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=77.41 E-value=6.9 Score=38.65 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhhhhh------------hhhcc------chhh----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYE------------YEKKF------YNDH----LESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~E------------yEKK~------~~e~----~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..||+.||.||.|.=+-|+ -||.. ..++ -|-.+.||.++=-+++-|+||+.+|..
T Consensus 237 ~~ELeSlK~EL~HfE~rL~KlrH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~Le~ 313 (323)
T 2p01_A 237 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSG 313 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999987544332 13321 2222 344679999999999999999999975
No 47
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.10 E-value=9 Score=32.01 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=5.1
Q ss_pred HHHHHHHHhc
Q 016220 109 VEKLRAELMN 118 (393)
Q Consensus 109 vEKLRaElan 118 (393)
+++|+++|.+
T Consensus 85 n~~L~~qL~d 94 (97)
T 2eqb_B 85 NKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3455555543
No 48
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=76.98 E-value=4.4 Score=34.44 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|..+..+.|.+.+-.+-+|+++|+.+|+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555554443
No 49
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.43 E-value=1.9 Score=47.67 Aligned_cols=17 Identities=0% Similarity=-0.261 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 016220 63 FLKIWSKNAITFHLCRG 79 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~ 79 (393)
|+.|++.++++++..+.
T Consensus 890 Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 890 LCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 50
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.25 E-value=7.3 Score=43.29 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 016220 62 IFLKIWSKNAITFHLCR 78 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R 78 (393)
.|.+||+.|++|++++.
T Consensus 988 ~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 51
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=75.75 E-value=12 Score=38.86 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=43.8
Q ss_pred HHHHHHH-HHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 65 KIWSKNA-ITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 65 ~Eid~lr-qElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.+.|+.- |....+|.-|+|=|..-.+++.++++|.+||.....||.||...|.
T Consensus 103 ~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 103 QQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 4445788999999999999999999999999999999999998875
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.19 E-value=4.6 Score=42.38 Aligned_cols=36 Identities=3% Similarity=-0.117 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~E 82 (393)
+++++++-.|--++..|+.-|++++.|||||-.+|+
T Consensus 120 qyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 120 EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333445588888888999998877665
No 53
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=75.18 E-value=8.2 Score=35.46 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=33.1
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhh---HHHHHHH-------HHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDH---LESLQVM-------EKNYITMATEVEKLRAE 115 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~---~Eq~q~M-------EKnlisMarEvEKLRaE 115 (393)
.+..+|+.+-.+| ..++++|+.++.++..++..++--+++..+. -++++.. +.+|-.+-.+++.++++
T Consensus 66 ~~~~~~~~~~a~l--~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~ 143 (341)
T 3fpp_A 66 QAENQIKEVEATL--MELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQAS 143 (341)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443332 3345555555555555555555444333222 1122222 23334444455666666
Q ss_pred HhcCC
Q 016220 116 LMNAP 120 (393)
Q Consensus 116 lanae 120 (393)
|..++
T Consensus 144 l~~a~ 148 (341)
T 3fpp_A 144 LDTAK 148 (341)
T ss_dssp HTTTT
T ss_pred HHHHH
Confidence 65543
No 54
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=74.91 E-value=5.6 Score=39.61 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhhhh
Q 016220 67 WSKNAITFHLCRGTY 81 (393)
Q Consensus 67 id~lrqElqr~R~a~ 81 (393)
|+.+.++|.++|..|
T Consensus 145 l~~~~~~l~KaKk~Y 159 (486)
T 3haj_A 145 WAKKLKEVEAAKKAH 159 (486)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444433
No 55
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.80 E-value=16 Score=33.51 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.+-.+.++|+|-+-.+.++++.|..+|..
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777877777777654
No 56
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=74.18 E-value=7.8 Score=31.77 Aligned_cols=30 Identities=10% Similarity=0.318 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-++..=+|.+-+-+|++|-.|+.|.+++..
T Consensus 47 q~L~~~l~~~h~~FiaLAa~l~~lH~~V~~ 76 (93)
T 3t98_B 47 QDLSMAMQKIYQTFVALAAQLQSIHENVKV 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999999999999998888753
No 57
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=73.85 E-value=8.2 Score=34.48 Aligned_cols=41 Identities=7% Similarity=-0.192 Sum_probs=21.7
Q ss_pred ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~ 81 (393)
|++=....+..+|..+-.+| ..++++++..+.++.|.+.-+
T Consensus 50 L~~ld~~~~~~~l~~a~a~l--~~a~a~l~~a~~~~~r~~~L~ 90 (277)
T 2f1m_A 50 LYQIDPATYQATYDSAKGDL--AKAQAAANIAQLTVNRYQKLL 90 (277)
T ss_dssp SEEECCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEECcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 43333333444444444443 335667777777777766554
No 58
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.76 E-value=15 Score=29.65 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=40.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhccchhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 016220 49 YFLHLAFQHCYCAIFLKIWSKNAI---TFHLCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 49 ~~~~~~~~~~~~~~l~~Eid~lrq---Elqr~R~a~EyEKK~~~e~~Eq-~q~MEKnlisMarEvEKLRaEl 116 (393)
-+|.+.++| +...-++||+.|++ ||.....-|+ .-++.|++ ...+|||+..+-+..+.|-..|
T Consensus 10 DKLRrrl~E-~~~q~qaEl~sLrrT~~EL~~G~~KL~----~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 10 DKLRWRMKE-EMDRAQAELNALKRTEEDLKKGHQKLE----EMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666776 22335888888864 6666666664 23444444 4569999999988777665444
No 59
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.73 E-value=5.2 Score=33.73 Aligned_cols=26 Identities=8% Similarity=-0.174 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccch
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYN 89 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~ 89 (393)
+.||-.||.-||+++.-|+-=|+.+.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~ 62 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKA 62 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44455555555555544444444333
No 60
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=73.46 E-value=9.2 Score=32.72 Aligned_cols=36 Identities=14% Similarity=-0.012 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL 95 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~ 95 (393)
++-|..+|..|+.+|+.++.|+-+|+|.+-+.|+++
T Consensus 9 ~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~L 44 (122)
T 3viq_A 9 RLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTL 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 467899999999999999999999999987766654
No 61
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=73.05 E-value=5.5 Score=29.50 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=24.9
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 85 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 85 KK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
||.|..+-...|.+||=+..+-.||..|..|++.-
T Consensus 16 kkdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 16 KKDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 44454444556788888888888999999988753
No 62
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=72.93 E-value=16 Score=32.87 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 100 KNYITMATEVEKLRAE 115 (393)
Q Consensus 100 KnlisMarEvEKLRaE 115 (393)
|++...++|+|+++..
T Consensus 144 ~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 144 RRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 63
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.78 E-value=5.2 Score=33.45 Aligned_cols=47 Identities=21% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|..++..+..|+.++...++-|++ ++..+|+-.-.|-.|||.|-|.|
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~-------~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENE-------LRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554 34455666666666777666654
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.64 E-value=12 Score=29.31 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..|+.|.|.....+..+-.-++-..+.....-+.+.++.|.|..+=.|+|++-..|..
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888777777777777778888888888888888887666554
No 65
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=72.63 E-value=8.4 Score=30.81 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016220 96 QVMEKNYITMATEVEKLR 113 (393)
Q Consensus 96 q~MEKnlisMarEvEKLR 113 (393)
-.+|..+-++-.||.=||
T Consensus 66 ~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666666666655443
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.58 E-value=14 Score=31.43 Aligned_cols=13 Identities=46% Similarity=0.473 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhcC
Q 016220 107 TEVEKLRAELMNA 119 (393)
Q Consensus 107 rEvEKLRaElana 119 (393)
-|.|.||.|++..
T Consensus 68 ~e~e~Lr~e~~~l 80 (120)
T 3i00_A 68 DDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888888744
No 67
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=72.31 E-value=24 Score=26.67 Aligned_cols=66 Identities=5% Similarity=-0.004 Sum_probs=41.1
Q ss_pred HHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 51 LHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 51 ~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|+.+..+|.... |..+|+.|+.++..+....+=+ +.....+..+...+.+-.|..-|+.|..-|.+
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~--A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~ 77 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGS--GSEAYQGVQQKWDATATELNNALQNLARTISE 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333 7889999999999998876554 44444555555555555565556555555543
No 68
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.31 E-value=1.7 Score=53.37 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
+|+|++.+.+|+..+.+.++-=++.-.+.-++++.+++++-.+.+|.++|..|+...++
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777766665444444555567777788888888888888888765543
No 69
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=72.18 E-value=1.4 Score=33.98 Aligned_cols=31 Identities=10% Similarity=-0.146 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhH
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHL 92 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~ 92 (393)
...+||..|++|+.++|..+++-||+..|+-
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~~ 93 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPAESCLEHH 93 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCGGGGTSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999988764
No 70
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.34 E-value=2.7 Score=34.19 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a 80 (393)
|++||+.|++|++++|..
T Consensus 55 Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 55 LQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555554444443
No 71
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=71.06 E-value=18 Score=32.49 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhh
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDH 91 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~ 91 (393)
+.+++.++++++.....++-=||.+...
T Consensus 122 ~~~~~k~~k~~~~~~~~l~KaK~~Y~~~ 149 (305)
T 2efl_A 122 FHDGRKAQQHIETCWKQLESSKRRFERD 149 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444333
No 72
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=69.87 E-value=22 Score=27.92 Aligned_cols=37 Identities=0% Similarity=-0.203 Sum_probs=27.7
Q ss_pred hHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhh--hhhh
Q 016220 48 YYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGT--YEYE 84 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a--~EyE 84 (393)
.-.|+.+..+|.... |..+|+.|+.++..++.. .+=|
T Consensus 13 ~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~ 53 (103)
T 4i0x_B 13 LDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGA 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeech
Confidence 445666666666555 788999999999999988 6655
No 73
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=69.77 E-value=3 Score=33.28 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~ 81 (393)
...|+.||+.|++|+.++|..|
T Consensus 52 N~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888877654
No 74
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=69.50 E-value=7.6 Score=38.90 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHH--HHHHHHHHHHHHHHHHHHHHHH
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLE--SLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~E--q~q~MEKnlisMarEvEKLRaE 115 (393)
..+.|++.|+- .|..+|+.||++|.++++.+|-+=..--|.+| ..+.+.+.+..+.+|+++|...
T Consensus 157 ~~~~a~~~l~G-~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~ 223 (476)
T 3gee_A 157 AYRTAVSQMKG-DLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDS 223 (476)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC-cHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666543 47889999999999999888864322212222 2344555556666666666543
No 75
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.39 E-value=19 Score=33.03 Aligned_cols=54 Identities=6% Similarity=-0.120 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.+||+.|..++..++..++--+..-.+.-.+.+..|..+-.+-.-|+|.+..|.
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444444444444444444444444444443
No 76
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=69.37 E-value=0.39 Score=38.14 Aligned_cols=67 Identities=15% Similarity=0.019 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
|..+-++|-.|..-..|..|+..|.+|||.----++.|.-.|+.-+-.-|++.|.|..+.+.++-|.
T Consensus 2 qalekelaqnewelqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalk 68 (80)
T 2lq4_p 2 QALEKELAQNEWELQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALK 68 (80)
T ss_dssp CSSHHHHSSSSTTTHHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHT
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 4455566666655667888999999999999999999999999888888999999988888776664
No 77
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=68.32 E-value=4.6 Score=36.32 Aligned_cols=67 Identities=12% Similarity=-0.005 Sum_probs=41.2
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
|.+.|-+|...+...-+++.|+.+|++|..+-+.+--.++...-.-|+.+.+|+-+..|-.++++|+
T Consensus 35 lns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l~~l~ 101 (177)
T 1nog_A 35 LNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEIGKIE 101 (177)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHhhCCCCC
Confidence 5556655554443345788899999999988776655432111123677777776666666655443
No 78
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.26 E-value=15 Score=36.88 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++++.||+.|-++...|++|...|...
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455556666666666666666655443
No 79
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=67.89 E-value=5.9 Score=33.15 Aligned_cols=15 Identities=0% Similarity=-0.172 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHhh
Q 016220 63 FLKIWSKNAITFHLC 77 (393)
Q Consensus 63 l~~Eid~lrqElqr~ 77 (393)
|++|||.|+++|+.+
T Consensus 4 l~~~~~~l~~~~~~~ 18 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA 18 (182)
T ss_dssp ---------CHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 455555555555544
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.49 E-value=6.8 Score=39.68 Aligned_cols=52 Identities=6% Similarity=0.030 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
++.++|.++++|++.|.-|.-...-++-.-|=+..||..|..++.+||.||.
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (500)
T 3nbx_X 448 IKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQ 499 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCTTSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCeeeecHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778889999999999999999999999999999999999999999999874
No 81
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.37 E-value=7 Score=38.94 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 94 SLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaEla 117 (393)
.++.++..|...-.|-.||.-+|.
T Consensus 32 ~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 32 ELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444443
No 82
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=66.57 E-value=25 Score=33.35 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-|..|.+|+..++.+...+=.. .|++-..++|++++..-|.|..+.+-|.++|.+|..
T Consensus 135 v~~~Le~e~~~l~~~~~~~L~~--L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~lee 192 (261)
T 3rkg_A 135 VMSALETDFKLHSQICIQILND--LENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDE 192 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555788888888777766554 457788899999998888999999999999988753
No 83
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=66.56 E-value=9.2 Score=31.26 Aligned_cols=36 Identities=8% Similarity=-0.195 Sum_probs=23.6
Q ss_pred hHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016220 48 YYFLHLAFQH--CYCAIFLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 48 ~~~~~~~~~~--~~~~~l~~Eid~lrqElqr~R~a~Ey 83 (393)
.+.++..++| ++..+-..|++.|...|..++.+++-
T Consensus 27 iy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~ 64 (120)
T 2p32_A 27 AFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDS 64 (120)
T ss_dssp HHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555 54444467788888888888888863
No 84
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=66.04 E-value=22 Score=31.56 Aligned_cols=55 Identities=9% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhhhhhh----------hhccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEY----------EKKFYNDHLESLQVMEKNYITMATEV---EKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~Ey----------EKK~~~e~~Eq~q~MEKnlisMarEv---EKLRaElan 118 (393)
..|||.++.=+.-+...+.. +.-+-.|++++.+.|...|..|+.|. |.+=+||.+
T Consensus 59 ~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~ 126 (158)
T 1naf_A 59 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQ 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 44555555544444444432 34456689999999999999999876 455566553
No 85
>3t9o_A DGC, diguanylate cyclase YDEH; putative zinc sensor, CZB domain, metal protein; 2.20A {Escherichia coli}
Probab=66.03 E-value=16 Score=30.64 Aligned_cols=57 Identities=5% Similarity=0.095 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHh-hhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 64 LKIWSKNAITFHL-CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 64 ~~Eid~lrqElqr-~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
-.+|+...+++++ +|.+++.=++++.+. .++..||+-+..+..-|.+++..|.+.|.
T Consensus 73 f~~l~~~H~~~H~~a~~ii~~~~~g~~~~-a~~~~~e~as~~~~~~ld~~k~~Ll~l~~ 130 (135)
T 3t9o_A 73 VRLMDSAHQHMHNCGRELMLAIVENHWQD-AHFDAFQEGLLSFTAALTDYKIYLLTLEH 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4667777777765 555565544555543 46889999999999999999999998764
No 86
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=65.93 E-value=41 Score=27.28 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hhhhhhcc------chhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRG-TYEYEKKF------YNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~-a~EyEKK~------~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
+..|.+||..++.|..++.. --.|=+.- -++..++++.++.-|..-..-++|||
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566677777666666532 11122222 23444555666666666666677776
No 87
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=65.90 E-value=21 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
++=|.+..+|.|+-....-|++=..||.+|.+
T Consensus 34 eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 34 EQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56678889999999999999999999998753
No 88
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.88 E-value=14 Score=32.88 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=7.0
Q ss_pred HHHHHHhhhhhhhhhhc
Q 016220 70 NAITFHLCRGTYEYEKK 86 (393)
Q Consensus 70 lrqElqr~R~a~EyEKK 86 (393)
+..|+.++...+.-|++
T Consensus 56 ~~~e~~~L~~~l~~E~~ 72 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENE 72 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 89
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=65.82 E-value=7.6 Score=33.11 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=43.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 55 FQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 55 ~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|.|-.|..+.+|-..+||+||.+=+.+...- -+-|....||.-++.|.+-..-||-+|
T Consensus 54 Tr~e~RerIv~eCnavRqaLQdLlseym~~~----g~ke~se~L~~aI~km~~kt~dLrRqL 111 (111)
T 4ehp_B 54 TRDDRRERIVAECNAVRQALQDLLSEYMGNA----GRKERSDALNSAIDKMTKKTRDLRRQL 111 (111)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHGGG----CCCCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccchhHHHHHHHHHHHHHHHHhcC
Confidence 3455677789999999999999988766552 123444567788888988888888765
No 90
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=65.61 E-value=10 Score=30.48 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
-|...|+.|++|+.++|..+|. +--+++.|.+..-.+-.+|+++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~-------~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQE-------NQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999884 3334444444444445555443
No 91
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.58 E-value=11 Score=33.18 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 70 NAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 70 lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+..|+.++...+.-|++.+. ..|+-.-.+-.|||.|=|.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~-------~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRT-------KAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHH-------HHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555433 3344444444444444443
No 92
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=65.34 E-value=5.5 Score=35.80 Aligned_cols=67 Identities=7% Similarity=0.012 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
|.+.|-+|...+....+++.|+.+|++|..+-+.+--.++...-.-|+.+.+|+-+..|-.++++|+
T Consensus 34 lns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l~~l~ 100 (177)
T 1woz_A 34 LNSFIGFAISKIPWEDMKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKWLEERTVEYRKESGPVK 100 (177)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCHHHHHHHHHHHHHHHhhCCCCC
Confidence 4555555544433345788888899999888776655432111123667777777666666665543
No 93
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=63.90 E-value=25 Score=31.62 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 016220 100 KNYITMATEVEKLRAELMN 118 (393)
Q Consensus 100 KnlisMarEvEKLRaElan 118 (393)
|++....+|+|++|..+.+
T Consensus 137 k~Y~~~~~e~e~a~~~~~~ 155 (301)
T 2efk_A 137 RKFERDCREAEKAAQTAER 155 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4556666666666655443
No 94
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=63.79 E-value=28 Score=28.35 Aligned_cols=15 Identities=0% Similarity=-0.179 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhh
Q 016220 64 LKIWSKNAITFHLCR 78 (393)
Q Consensus 64 ~~Eid~lrqElqr~R 78 (393)
-.||..|++-++.+-
T Consensus 43 E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 95
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=63.64 E-value=9.8 Score=32.42 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=45.1
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
+..||. +|.-+++....|+++-+ |+.-+++-.+.|+-+|.+|.- +..+-.+||+.+-..-=.|..|+++|..|=
T Consensus 25 ~~~~r~-~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq---~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eN 100 (112)
T 1x79_B 25 TMKDKQ-ELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQ---AKRDVQEQMAVLMQSREQVSEELVRLQKDN 100 (112)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455664 46666777777766544 677777777888888887754 344556677777777777777777777764
Q ss_pred hc
Q 016220 117 MN 118 (393)
Q Consensus 117 an 118 (393)
.+
T Consensus 101 d~ 102 (112)
T 1x79_B 101 DS 102 (112)
T ss_dssp --
T ss_pred cc
Confidence 43
No 96
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=62.98 E-value=17 Score=33.74 Aligned_cols=85 Identities=19% Similarity=0.104 Sum_probs=27.1
Q ss_pred hhhHHhhhhhhcc-ccccccCCCchhHHHHHHHH---hHHHHHHHHHHHHHHHHHHhhhh--------hhhhhhccc--h
Q 016220 24 LFRQVYSKALHFG-HPWICESSSPQYYFLHLAFQ---HCYCAIFLKIWSKNAITFHLCRG--------TYEYEKKFY--N 89 (393)
Q Consensus 24 ~~~~~~~k~~h~~-h~l~~e~~~~~~~~~~~~~~---~~~~~~l~~Eid~lrqElqr~R~--------a~EyEKK~~--~ 89 (393)
++-=+.|||+-++ |+-+.=- . +-.++-.+.| ...+..|-++++.+..+|..+|. +||.||+.. +
T Consensus 41 L~~yliSKEiyVvneEt~~~~-~-~~~~~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~ 118 (214)
T 2cly_A 41 LILYLLSKEIYVITPETFSAI-S-TIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALV 118 (214)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCceEEEechHHHHH-H-HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556789999999 4321111 0 1111222222 22233467777777777777776 455544432 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 016220 90 DHLESLQVMEKNYITMATEVE 110 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvE 110 (393)
|..+.+=.+-|+-+.|--|+.
T Consensus 119 ~~~~~Lf~~~kEn~al~lEa~ 139 (214)
T 2cly_A 119 QKRHYLFDVQRNNIAMALEVT 139 (214)
T ss_dssp GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443
No 97
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.56 E-value=26 Score=35.25 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhh---hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEY---EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey---EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|+.|+|.||.|...+-..|-- ++....+++++++.+.+.|-.+-.|+.+|.+||.+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444432 11223456777777777777777777777766643
No 98
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.50 E-value=9.4 Score=37.76 Aligned_cols=9 Identities=33% Similarity=0.316 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016220 108 EVEKLRAEL 116 (393)
Q Consensus 108 EvEKLRaEl 116 (393)
+-.||.-+|
T Consensus 46 ~rr~l~n~~ 54 (403)
T 4etp_A 46 VRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 99
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=62.37 E-value=25 Score=36.59 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=33.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHH
Q 016220 48 YYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQ 96 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q 96 (393)
.++..++-..-|-+.+++|.+.|+|.-..+.+.+|-+++.+.+.|+.-+
T Consensus 31 ~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~ 79 (497)
T 3iox_A 31 AYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQ 79 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333344568889999999999988888888666666555443
No 100
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=61.92 E-value=1.4 Score=36.68 Aligned_cols=7 Identities=0% Similarity=0.078 Sum_probs=4.3
Q ss_pred eeeccch
Q 016220 17 FTCTLDF 23 (393)
Q Consensus 17 ~~~~~d~ 23 (393)
+|+-||.
T Consensus 5 kig~Vd~ 11 (143)
T 1u2m_A 5 KIAIVNM 11 (143)
T ss_dssp TEEEECH
T ss_pred eeEEeeH
Confidence 5666665
No 101
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.76 E-value=32 Score=27.73 Aligned_cols=51 Identities=14% Similarity=-0.020 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
|+.|.|+.......+..-+.-....+...-+.+.++.|.+-.+-.|++++.
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333333333334444444444444444444433
No 102
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=61.60 E-value=11 Score=27.38 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK 86 (393)
.+||.+|+.-|.-+.+.+|+|-.
T Consensus 19 naelknlkehlkfakaelefela 41 (46)
T 3he4_B 19 NAELKNLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888743
No 103
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=61.09 E-value=63 Score=27.14 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 69 KNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 69 ~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
.-.+-..-+|+.++-||.---++..+++.+|--|..+.++++.++..
T Consensus 43 TCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999887777778888887777777777766643
No 104
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=60.91 E-value=14 Score=28.29 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM 105 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM 105 (393)
.+...|+.|+++++.+=...|||+-+. .-.|++++++.++.+
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~--lRD~I~~L~~~l~~~ 62 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQ--IRDQLHQLRELFIAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHH--HHHHHHHHHHHHhcc
Confidence 466779999999999999999999764 567888888776643
No 105
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.77 E-value=9.7 Score=36.41 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=23.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 87 FYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 87 ~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
.|..+.+.++...+.|..+-.|||+|+.
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344788999999999999999999985
No 106
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=60.15 E-value=17 Score=34.35 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred HhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 75 HLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 75 qr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+-+|.|+-.|++.+--++++++..=+.-++|..|+..|+.-|.
T Consensus 189 ~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~ 231 (253)
T 2d1l_A 189 QAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISE 231 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHH
Confidence 4578999999999999999999999999999999999998654
No 107
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=60.02 E-value=13 Score=29.37 Aligned_cols=43 Identities=7% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
|++.|..|+.=|..||.+- .+|.+..+|.||--+-+|+++|+.
T Consensus 25 L~EQ~~~I~~yI~qAk~~~---------r~DEV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAG---------RMDEVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666543 456777888899888888888764
No 108
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.88 E-value=14 Score=27.78 Aligned_cols=19 Identities=0% Similarity=-0.354 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
|+.||+.|++|++.++..+
T Consensus 42 L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 42 LQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 109
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=59.69 E-value=24 Score=35.09 Aligned_cols=56 Identities=5% Similarity=-0.070 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEY-EKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~Ey-EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.|+.|+|.||.|...+-..|-- .|+...+++++++.+.+.|-.+-.|+.+|.+||.
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665555543 1111235567777777777777777777777665
No 110
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=59.52 E-value=27 Score=28.97 Aligned_cols=13 Identities=8% Similarity=-0.097 Sum_probs=6.0
Q ss_pred HHHHHHhhhhhhh
Q 016220 70 NAITFHLCRGTYE 82 (393)
Q Consensus 70 lrqElqr~R~a~E 82 (393)
|.++|.-.+..++
T Consensus 39 l~~~L~~i~~~~~ 51 (218)
T 3ehh_A 39 LGQKLSLMGLKSD 51 (218)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555544444443
No 111
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.50 E-value=64 Score=25.61 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 94 SLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaEla 117 (393)
++..++..+..+-+|+++|+.++.
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554
No 112
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.02 E-value=14 Score=38.06 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 82 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 82 EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.-||+.+.+.-...+.||.-|..|-.|+++.+.+|...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (575)
T 2i1j_A 324 QLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEA 361 (575)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33666665555556666666766666666666666543
No 113
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=58.85 E-value=11 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=27.6
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 85 KKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 85 KK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|..|..++++.|.+|.--.-|-+|||.|++=|.
T Consensus 17 Kq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 17 KQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888999999999998774
No 114
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=58.83 E-value=9.6 Score=31.39 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=34.2
Q ss_pred hhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 76 LCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 76 r~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.+|.-||+=|..-.+++++++++.+|+..-.-||..|..+|-
T Consensus 4 dLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDID 45 (87)
T 1fzc_A 4 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 45 (87)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 467889999999999999999999999999999999988874
No 115
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=58.05 E-value=9.8 Score=35.78 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016220 98 MEKNYITMATEVEKLRAE 115 (393)
Q Consensus 98 MEKnlisMarEvEKLRaE 115 (393)
++.++....+++++.+.|
T Consensus 197 ~~~k~~k~~~~~~~a~~~ 214 (350)
T 3aco_A 197 LQDKIEKCKQDVLKTKEK 214 (350)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 116
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=57.55 E-value=50 Score=33.77 Aligned_cols=92 Identities=5% Similarity=-0.069 Sum_probs=45.7
Q ss_pred hhhHHhhhhhhcccc--ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh-----hhhhhhccchhhHHHHH
Q 016220 24 LFRQVYSKALHFGHP--WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRG-----TYEYEKKFYNDHLESLQ 96 (393)
Q Consensus 24 ~~~~~~~k~~h~~h~--l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~-----a~EyEKK~~~e~~Eq~q 96 (393)
++++|+.--.+..-+ +|.| ||..||+.-.+.+.......|+..+++||..... .++-+. .+..+.++
T Consensus 305 i~~Di~~~kk~~gWrT~~Ii~---EL~~Ei~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~~~e~~ 378 (470)
T 4g63_A 305 IYGDILRLKKDCNWRTALVVE---ELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESS---QQYDQEIH 378 (470)
T ss_dssp CCSCHHHHHHSCCCEEEEECT---THHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCS---SSCHHHHH
T ss_pred hHHHHHhhhhccCCeEEEEhH---HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhhcccchhh---hhhhhHHH
Confidence 555554422333322 5665 3666666544433222223455555555543322 222211 12233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 97 VMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaElanae~ 121 (393)
.++..+-.+-+|+.+|+.|+...=|
T Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~fn 403 (470)
T 4g63_A 379 DLQLQISTVDLQISRLLQEQNSFYN 403 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5556666777888888888865433
No 117
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=57.26 E-value=19 Score=34.53 Aligned_cols=62 Identities=2% Similarity=-0.141 Sum_probs=32.0
Q ss_pred eeccchhhhHHhhh-hhhccccccccCCCchhHHHHHHHHhHHHHHHH----------------HHHHHHHHHHHhhhhh
Q 016220 18 TCTLDFLFRQVYSK-ALHFGHPWICESSSPQYYFLHLAFQHCYCAIFL----------------KIWSKNAITFHLCRGT 80 (393)
Q Consensus 18 ~~~~d~~~~~~~~k-~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~----------------~Eid~lrqElqr~R~a 80 (393)
+.+-|+.+.+.+.. .++++|-++.+=. .+..+++..-|++|...++ +-.+.+.+|+.++|..
T Consensus 77 ~le~d~~~~~~~~~~~~lq~~~~~~~L~-~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~ 155 (279)
T 3qwe_A 77 FLEHDLSLGTLAMETVAQQKRDYYQPLA-AKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQG 155 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555553222 4555555444442 3555666666666555542 3334555666666654
No 118
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=57.23 E-value=28 Score=26.36 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
.++=|.+..+|.|+.....-|++=..||.+|.+-
T Consensus 30 ~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 30 HDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999999999887543
No 119
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.08 E-value=10 Score=37.56 Aligned_cols=16 Identities=0% Similarity=-0.058 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 016220 62 IFLKIWSKNAITFHLC 77 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~ 77 (393)
.|..+|+.+++|++.+
T Consensus 21 ~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 21 ALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 120
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=56.97 E-value=18 Score=32.01 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=8.3
Q ss_pred cceeeeeeeeeeeecc
Q 016220 6 AHKLEIRCTLIFTCTL 21 (393)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (393)
.+.|.|+++..--+.|
T Consensus 7 ~~~m~i~r~V~VK~iV 22 (150)
T 4dci_A 7 GTILTIKRPITVRAVV 22 (150)
T ss_dssp CCCEEBCEEEEEEEEC
T ss_pred CCceEEEEEEEEEEEE
Confidence 4566666655443333
No 121
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=56.77 E-value=84 Score=26.08 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.||.|++||..-+..+.--|. .++..+.=+..|.+---+|++.|..|..
T Consensus 55 ~le~lk~eL~~~~~el~~lq~----~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQG----SLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455554443333333222 2333333333344444667777777653
No 122
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=56.33 E-value=12 Score=32.17 Aligned_cols=21 Identities=5% Similarity=-0.037 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey 83 (393)
+..+|+.|++|+.+++..++-
T Consensus 143 l~~~i~~L~~~l~~le~~~~~ 163 (166)
T 3pjs_K 143 YTRTTRALHERFDRLERMLDD 163 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555554444443
No 123
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=56.29 E-value=25 Score=26.27 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
|.+.|..++.=|..||.+ -.+|.+..+|.||--+-+|+++|+.+
T Consensus 7 L~EQ~~~I~~~I~qAk~~---------~r~DEV~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAA---------GRMDEVRTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666666666554 34667888999999999999988744
No 124
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=55.94 E-value=30 Score=31.79 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
|.+|.+.|++++.++.+.+|
T Consensus 144 L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 144 LQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544433
No 125
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=55.86 E-value=43 Score=34.37 Aligned_cols=55 Identities=5% Similarity=-0.044 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKK---FYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK---~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|+.|+|.||.|.-.+-..|--=|| .-.+++++++.+.+.|-.+-.|+.+|.+||.
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544432222 2345777888888887777777777766664
No 126
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=55.83 E-value=26 Score=32.77 Aligned_cols=38 Identities=13% Similarity=-0.129 Sum_probs=19.1
Q ss_pred HHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHH
Q 016220 51 LHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVME 99 (393)
Q Consensus 51 ~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ME 99 (393)
|+.|++|-++++ |..||..|++|++.+| ++.||.|.|.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLk-----------eLae~~q~la 152 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELA-----------EVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 455666644433 3444444555544444 4556666553
No 127
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=55.61 E-value=18 Score=39.15 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh---hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYE---KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyE---KK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|..|++.|++||++++.-+.-| .|+-.+.+|+.+. +|...-.|++||++.|+.
T Consensus 805 l~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 860 (862)
T 1gax_A 805 QEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEA---RLKENLEQAERIREALSQ 860 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 6677777777777776666554 3666666666443 466667788899888875
No 128
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=55.57 E-value=30 Score=26.43 Aligned_cols=49 Identities=4% Similarity=-0.053 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 016220 58 CYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 58 ~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEv 109 (393)
+-..-|.++|++|++||-.+|-.--- +..++..+.+.+-|++--|-..+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~at---gql~n~~~ir~vRr~IARi~Tvl 57 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLAM---GQLKNTSLIKLTKRDIARIKTIL 57 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc---cCccCcHHHHHHHHHHHHHHHHH
Confidence 33466899999999999999954332 66788999999999976665544
No 129
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.42 E-value=80 Score=25.42 Aligned_cols=16 Identities=19% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 100 KNYITMATEVEKLRAE 115 (393)
Q Consensus 100 KnlisMarEvEKLRaE 115 (393)
--+..|+.||+.|+..
T Consensus 77 ~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 77 VERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344466666666554
No 130
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.37 E-value=36 Score=27.11 Aligned_cols=21 Identities=0% Similarity=-0.122 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTYEYE 84 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyE 84 (393)
-.||..+..|+..++..++-+
T Consensus 13 eeEm~~~eeel~~lke~l~k~ 33 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKT 33 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555433
No 131
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.89 E-value=86 Score=26.73 Aligned_cols=18 Identities=6% Similarity=-0.158 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~ 81 (393)
+.+|+.|++|+.+.+..+
T Consensus 44 q~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666777666655544
No 132
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.86 E-value=16 Score=29.82 Aligned_cols=31 Identities=6% Similarity=-0.328 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhh
Q 016220 49 YFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRG 79 (393)
Q Consensus 49 ~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~ 79 (393)
.-|..+++|-++++ |+.||..|++|++.+|.
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777754443 45555555555555553
No 133
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=54.85 E-value=28 Score=28.98 Aligned_cols=16 Identities=0% Similarity=-0.116 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 016220 63 FLKIWSKNAITFHLCR 78 (393)
Q Consensus 63 l~~Eid~lrqElqr~R 78 (393)
|+.||+.|.+||+++=
T Consensus 52 L~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6678888888877653
No 134
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=54.57 E-value=35 Score=31.59 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 016220 100 KNYITMATEVEKLRA 114 (393)
Q Consensus 100 KnlisMarEvEKLRa 114 (393)
+++....+++++.+.
T Consensus 190 ~k~~k~~~~~~~a~~ 204 (337)
T 2x3v_A 190 DKVDKCRQDVQKTQE 204 (337)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334344444444433
No 135
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=54.55 E-value=22 Score=35.41 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITM-------ATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisM-------arEvEKLRaElana 119 (393)
++.+++.++++++.+...++-=||.+.......+..+..+-.. .+|+|||+..+.++
T Consensus 134 ~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~ 197 (486)
T 3haj_A 134 AEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKC 197 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence 3445666666777666666666666644333222222111111 36788887777653
No 136
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=54.38 E-value=31 Score=34.23 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKK---FYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK---~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.|+.|+|.||.|...+-..|--=|| ...+++++++.+.+.|-.+-.++.+|.+||.
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555555542111 1234556666666666666666655555543
No 137
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=54.36 E-value=73 Score=25.85 Aligned_cols=54 Identities=4% Similarity=-0.087 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYE-YEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E-yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
++.||+.|+.||...++.++ .|.|..-..=++.+.-=+.|-.+|-+||-+=-|.
T Consensus 24 v~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 24 VKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998874 4554222233566666677777777777654443
No 138
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=54.12 E-value=61 Score=29.61 Aligned_cols=26 Identities=4% Similarity=0.139 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 94 SLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaElana 119 (393)
+++..+..|-..-.++++++.+|.+.
T Consensus 129 ~l~~~~a~l~~a~a~l~~a~~~l~~~ 154 (341)
T 3fpp_A 129 QIGTIDAQIKRNQASLDTAKTNLDYT 154 (341)
T ss_dssp HHHHHHHHHHHTHHHHTTTTTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 34455555555555566666655544
No 139
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.65 E-value=43 Score=27.93 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 016220 69 KNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMA----TEVEKLRAEL 116 (393)
Q Consensus 69 ~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMa----rEvEKLRaEl 116 (393)
.+..||..+|..+|-+--.++++--+++.+..-|.-|- .||..|++.|
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666665556665555555555444443 3666666554
No 140
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=52.91 E-value=28 Score=25.78 Aligned_cols=41 Identities=7% Similarity=0.122 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
|++.|..++.=|..||.+- .+|...++|+||--+-+|++.+
T Consensus 6 L~EQ~~~I~~~I~qAk~~r---------RfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAG---------RMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc---------ChHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666543 4567888899988888888764
No 141
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=52.85 E-value=13 Score=36.14 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
-++.|||.+...++.... + ..-+|++.|+.-|..|-.+|.+|..+|.
T Consensus 6 ~~~~~le~~~~~ik~~~~-----~----~~~~~I~~Lq~~le~L~~KI~~LE~~v~ 52 (323)
T 1lwu_B 6 NAQKEIENRYKEVKIRIE-----S----TVAGSLRSMKSVLEHLRAKMQRMEEAIK 52 (323)
T ss_dssp -CHHHHHHHTHHHHHHHH-----T----TTHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-----h----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555555441 1 1112445555555555566666655553
No 142
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=52.22 E-value=17 Score=31.38 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=36.4
Q ss_pred HhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 75 HLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 75 qr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.-+|.-||+=|..-.+++.+++++.+|+..=.-||..|..+|-
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDID 67 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDID 67 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3466777888888899999999999999999999988888764
No 143
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.10 E-value=45 Score=34.19 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+++++++.+.+.|-.+-.|+.+|.+||.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777666666666654
No 144
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=52.04 E-value=10 Score=34.57 Aligned_cols=52 Identities=10% Similarity=-0.102 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 016220 56 QHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 110 (393)
Q Consensus 56 ~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvE 110 (393)
+++-+.-|.++|++|++||-.+|-.--- +..|+.-+++.+-|++--|-..+-
T Consensus 71 R~lS~eEL~ekL~eLKkELFnLRfQkAT---GQLeNpsrIR~VRRdIARIkTVLr 122 (173)
T 3bbo_Z 71 RSKTTEQLQEEVVDLKGELFMLRLQKSA---RNEFKSSDFRRMKKQVARMLTVKR 122 (173)
T ss_dssp HHSCHHHHHHHHHHHTTHHHHHHHHHHH---CCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHHHHHHH
Confidence 3444567999999999999999965332 347889999999999776666553
No 145
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=51.97 E-value=71 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=20.2
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 85 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 85 KK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
++.-.+..+-+..|.++|...+...+....+++.
T Consensus 59 ~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~~~a~ 92 (97)
T 2vs0_A 59 SPKVEKFAQLLEEIKQQLNSTADAVQEQDQQLSN 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556677788888888888888887777654
No 146
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.85 E-value=12 Score=30.56 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEK 100 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEK 100 (393)
++..-.+..+|+ |.|++ |-+++++++.+++
T Consensus 37 r~~ni~~eskL~------eae~r-n~eL~~e~~~l~~ 66 (81)
T 1wt6_A 37 RTDNQNFASQLR------EAEAR-NRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHH
Confidence 444444444444 33332 4455555555544
No 147
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=51.77 E-value=5.1 Score=40.98 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 016220 69 KNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI 103 (393)
Q Consensus 69 ~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli 103 (393)
+|.+||.-.....++||+. .+++...+.||+++.
T Consensus 326 EL~~Ei~~~~~~~~~~~~l-~~~~~~~~~l~~~~~ 359 (470)
T 4g63_A 326 ELGEEIASQIRALPIEKKI-GEAMAIKKELEQKYV 359 (470)
T ss_dssp THHHHHHHHHHSHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHHH
Confidence 3445554443444455543 234444444554443
No 148
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=51.72 E-value=43 Score=25.06 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
.++=|.+..+|.|+.....-|++=..||.+|.
T Consensus 36 ~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 36 ESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667888999999999999999999998764
No 149
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=51.67 E-value=38 Score=35.54 Aligned_cols=42 Identities=7% Similarity=-0.077 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
.-++.+++.++.|+.++|+.++.+.|..+++-|-.-.-+|=|
T Consensus 310 w~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~ 351 (551)
T 2b5u_A 310 WDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVY 351 (551)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888999999999999999888888888433333433
No 150
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=51.48 E-value=44 Score=32.31 Aligned_cols=49 Identities=4% Similarity=-0.064 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
|+++|+.|.+|+..+...++ |+...-...-|++..++++.+.-+++.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 252 LNEERDILNKDLNKALKDIE-KRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-hCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888776 33333333444555555555554444443
No 151
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=51.42 E-value=32 Score=29.38 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 016220 69 KNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 111 (393)
Q Consensus 69 ~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEK 111 (393)
-|++-+.--|.-|+-|...+-.+-+..+.|+.-|-.|-+++++
T Consensus 66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3333444445556666666655555555555554444444443
No 152
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=51.37 E-value=70 Score=27.26 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=35.1
Q ss_pred ccccccCCCch---hHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhh--HHHHHHHHHHHHHHHHHH
Q 016220 37 HPWICESSSPQ---YYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDH--LESLQVMEKNYITMATEV 109 (393)
Q Consensus 37 h~l~~e~~~~~---~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~--~Eq~q~MEKnlisMarEv 109 (393)
+.|.+.++..- .-++..+++||+..+ |+..|++|.+-+.-..+-- .|.+++. ++.++ +-+-.+-.||
T Consensus 48 ~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np---~kF~l~~~Ei~~Rr---~fV~~~r~~I 121 (130)
T 4dnd_A 48 QRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP---GKFKLPAGDLQERK---VFVERMREAV 121 (130)
T ss_dssp HHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHCCCHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH---HhcCCCHHHHHHHH---HHHHHHHHHH
Confidence 44655553211 126777788877655 4555555555444322110 1222222 33332 2344455677
Q ss_pred HHHHHHHh
Q 016220 110 EKLRAELM 117 (393)
Q Consensus 110 EKLRaEla 117 (393)
++|+.+|.
T Consensus 122 ~~mk~~l~ 129 (130)
T 4dnd_A 122 QEMKDHMV 129 (130)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 88877773
No 153
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=51.12 E-value=8.1 Score=35.20 Aligned_cols=66 Identities=5% Similarity=-0.071 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhhhhhhhhc--cc---hhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHC--YCAIFLKIWSKNAITFHLCRGTYEYEKK--FY---NDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 47 ~~~~~~~~~~~~--~~~~l~~Eid~lrqElqr~R~a~EyEKK--~~---~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
|.+.|-+|...+ ...-+++.|+.+|++|..+-+.+--.+. .. .-.-|+.+.+|+-+..|-.++++|
T Consensus 43 lns~iGla~~~~~~~~~~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~~~~i~~~~v~~LE~~id~~~~~l~pl 115 (194)
T 3ci3_A 43 LNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAV 115 (194)
T ss_dssp HHHHHHHHHHTCCTTTGGGHHHHHHHHHHHHHHHHHHTSCTTCTTCCCCCCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 445555554433 2234777888888888888766544321 11 112367777777666665555444
No 154
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.10 E-value=65 Score=28.77 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 016220 102 YITMATEVEKL 112 (393)
Q Consensus 102 lisMarEvEKL 112 (393)
|--|++|.|+|
T Consensus 134 M~rk~qEAe~M 144 (152)
T 3a7p_A 134 LKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 155
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.97 E-value=17 Score=37.53 Aligned_cols=37 Identities=5% Similarity=-0.146 Sum_probs=20.7
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhh
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLC 77 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~ 77 (393)
|.+|++ +.-++++.-+||..-+ +.+|....+.||.+.
T Consensus 323 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (575)
T 2i1j_A 323 LQLEIA--ARERAEKKQQEYQDRLRQMQEEMERSQANLLEA 361 (575)
T ss_dssp CCSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666663 5556666666655443 355555555555544
No 156
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.93 E-value=91 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.+++.+++.|..+-.++++|..+|..
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666543
No 157
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=50.85 E-value=21 Score=35.50 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=18.6
Q ss_pred hhhhhccc-cccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 016220 30 SKALHFGH-PWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 30 ~k~~h~~h-~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R 78 (393)
.|.|-++| ||-.|=-+.|-..|++.++.|+. |+.|++.|..|+++-.
T Consensus 29 ~~~~~~~~~~~~~~~m~sLp~~v~~rI~aLk~--lQ~E~~~le~ef~eEv 76 (359)
T 3fs3_A 29 KTSLKYRCFYLYDDKMTDLTEEQKETLKKLKL--YQKEYYDYESKFEYEL 76 (359)
T ss_dssp ----------------CCSCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred ccchhhccccchhhhhhhCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34566666 44444434577778866666554 4555555555554433
No 158
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.68 E-value=23 Score=26.16 Aligned_cols=16 Identities=0% Similarity=-0.267 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 016220 63 FLKIWSKNAITFHLCR 78 (393)
Q Consensus 63 l~~Eid~lrqElqr~R 78 (393)
|++||+.|+.|+..++
T Consensus 41 L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 41 LQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 159
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=50.44 E-value=13 Score=34.82 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=17.6
Q ss_pred hhhhccccccccCCCchhHHHHHHHHhHHHHH
Q 016220 31 KALHFGHPWICESSSPQYYFLHLAFQHCYCAI 62 (393)
Q Consensus 31 k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~ 62 (393)
|+|=.+=+-|||++..+..+++..+|.+.+..
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~el 102 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDL 102 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334566666666666666666555444
No 160
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.34 E-value=70 Score=28.47 Aligned_cols=24 Identities=33% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.++...|+-.-.+-+|||.|=|-|
T Consensus 72 ~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566888888888888887766
No 161
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.23 E-value=26 Score=34.89 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016220 92 LESLQVMEKNYITMATE 108 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarE 108 (393)
|.+.+.+-|.|-.+..|
T Consensus 40 l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 40 LFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444443333
No 162
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=49.74 E-value=10 Score=35.81 Aligned_cols=36 Identities=3% Similarity=-0.161 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhh
Q 016220 49 YFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYE 84 (393)
Q Consensus 49 ~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyE 84 (393)
.+|++-++.|...+ +-.|++.|++||+.+...|+.-
T Consensus 199 ~~i~r~L~~~A~~l~~~D~~m~~Ir~~i~~~q~~~~~~ 236 (255)
T 3l9d_A 199 EDIKRRLELTSKIAFQLDEEMRQIRDDIKEAQLLFDAE 236 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555544433 5778888999998887766644
No 163
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=49.73 E-value=12 Score=34.08 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhH----HHHHHHHHHHHHHHHHHhhhhhhhhhhc--cchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHC----YCAIFLKIWSKNAITFHLCRGTYEYEKK--FYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 47 ~~~~~~~~~~~~----~~~~l~~Eid~lrqElqr~R~a~EyEKK--~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
|.+.|-+|...+ ...-+++.|+.+|++|..+-+.+--.+. ...-.-|+.+.+|+-+..|-.++++|
T Consensus 36 lns~iGla~~~~~~~~~~~~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~~~v~~LE~~Id~~~~~l~pl 107 (193)
T 1rty_A 36 LNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGGDLAIVTERKDYKLTEESVSFLETRIDAYTAEAPEL 107 (193)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 555666665544 2245788888999999888776654321 11112366666776666555555444
No 164
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=49.66 E-value=37 Score=26.41 Aligned_cols=49 Identities=6% Similarity=-0.055 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 111 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEK 111 (393)
..-|.++|++|++||-.+|-.--- +..++..+.+.+-|++--|-..+-.
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~at---gql~n~~~ir~vRr~IARi~Tvl~e 66 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQASI---GQLSQNHKIRDLKRQIARLLTVLNE 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---TCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 455899999999999999976433 3467888899999988777665543
No 165
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.62 E-value=22 Score=29.80 Aligned_cols=21 Identities=5% Similarity=-0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey 83 (393)
...|++.|+.+++.+|..+|.
T Consensus 16 ~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 467888888888888877753
No 166
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=49.02 E-value=76 Score=28.05 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 69 KNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 69 ~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
.++++++.....++--|+.+...........++- .-.++||||++.+.++
T Consensus 126 ~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~~-~s~k~~eK~~~k~~ka 175 (276)
T 2v0o_A 126 EAVQTIQSITQALQKSKENYNAKCVEQERLKKEG-ATQREIEKAAVKSKKA 175 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 4444444444444433443333332222222221 2247788887776544
No 167
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=49.01 E-value=29 Score=32.69 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
++++|+.++.|++|.+.-++ ++ +-.-.+++..+.+|...-.+++.++.+|.+..
T Consensus 86 a~a~l~~a~~~~~R~~~L~~--~g--~is~~~~~~a~~~~~~a~a~l~~a~~~l~~~~ 139 (369)
T 1vf7_A 86 AQANLASTQEQAQRYKLLVA--DQ--AVSKQQYADANAAYLQSKAAVEQARINLRYTK 139 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TT--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHH--CC--CcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 45666666667776665543 11 22234556667777777788999999888654
No 168
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.01 E-value=21 Score=28.06 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+.+..+|+.+-.+-.++++|+..|-
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777776664
No 169
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=48.91 E-value=21 Score=34.72 Aligned_cols=56 Identities=7% Similarity=-0.132 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYN----DHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~----e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|.+++..|++.+..++..++.-+.... +.-.=.+.|+.-|-....++++|..++..
T Consensus 296 l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~ 355 (411)
T 1ux5_A 296 LVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKL 355 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888887764221000 01112345555555555566666555543
No 170
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.87 E-value=81 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016220 94 SLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKL 112 (393)
|.-.||.++..+-.|=.+|
T Consensus 111 q~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554443
No 171
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=48.53 E-value=12 Score=35.21 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=5.8
Q ss_pred cccCCCchhHHHHH
Q 016220 40 ICESSSPQYYFLHL 53 (393)
Q Consensus 40 ~~e~~~~~~~~~~~ 53 (393)
||++++.+...++.
T Consensus 82 i~~~~r~ie~~l~~ 95 (253)
T 2ykt_A 82 MAEVHRQIQNQLEE 95 (253)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 172
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.52 E-value=49 Score=41.25 Aligned_cols=69 Identities=4% Similarity=-0.089 Sum_probs=41.5
Q ss_pred chhHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
++..+|+.+-++|+++. ++++|+.|.++|+.+...|+-=.+...++-++++.+|+.|..-.+=|+.|-.
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556666666655543 4677777777777777777654444455556666677766654444444433
No 173
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=48.46 E-value=45 Score=25.83 Aligned_cols=48 Identities=8% Similarity=-0.099 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcc--chhhHHHHHHHHHHHHHHHHHH
Q 016220 58 CYCAIFLKIWSKNAITFHLCRGTYEYEKKF--YNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 58 ~~~~~l~~Eid~lrqElqr~R~a~EyEKK~--~~e~~Eq~q~MEKnlisMarEv 109 (393)
+-+.-|.++|+.|+.||-.+|- .+.+ -.++..+.+.+-|++--|-..+
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~----q~atggql~n~~~ir~vRr~IARi~Tvl 61 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARA----VQAAGGAPENPGRIKELRKAIARIKTIQ 61 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH----HHHTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH----HHHhcCCccChHHHHHHHHHHHHHHHHH
Confidence 3345689999999999999994 3444 5789999999999976665544
No 174
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=48.27 E-value=9.1 Score=34.81 Aligned_cols=66 Identities=5% Similarity=-0.131 Sum_probs=39.2
Q ss_pred chhHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhhhhhhhhhc-------cchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHC-YCAIFLKIWSKNAITFHLCRGTYEYEKK-------FYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 46 ~~~~~~~~~~~~~-~~~~l~~Eid~lrqElqr~R~a~EyEKK-------~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+|.+.|-+|...+ ...-+++.|+.+|++|..+-+.+--.+. ..+ .-|+.+.+|+-+..|-.++++|
T Consensus 41 Elns~iGla~~~~~~~~~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~~~~~i-~~~~v~~LE~~id~~~~~l~pl 114 (193)
T 2g2d_A 41 EANAAIGAALALGHPDTQITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRI-AQSYIDRLEGWCDAYNAGLPAL 114 (193)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSSCSSCCCCC-CHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHcCCccccccccccCC-CHHHHHHHHHHHHHHHhhCCCC
Confidence 3566666665544 3345888899999999998776653311 111 2366666666655554444433
No 175
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=48.09 E-value=28 Score=27.63 Aligned_cols=36 Identities=6% Similarity=-0.201 Sum_probs=23.6
Q ss_pred hhHHHHHHHH--hHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016220 47 QYYFLHLAFQ--HCYCAIFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 47 ~~~~~~~~~~--~~~~~~l~~Eid~lrqElqr~R~a~E 82 (393)
+.+.++..++ +++..+-..|++.|+..|..++.+++
T Consensus 12 ~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~ 49 (113)
T 1ud0_A 12 YAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLD 49 (113)
T ss_dssp HHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 45444456777888888888888875
No 176
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.08 E-value=33 Score=31.72 Aligned_cols=43 Identities=0% Similarity=-0.229 Sum_probs=24.8
Q ss_pred hhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 016220 33 LHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 33 ~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~ 81 (393)
|-.-|.||. .|+.++.+-.++|. ....||+.|+++|+.+|...
T Consensus 15 l~~ad~LV~----~L~~En~~L~~ql~--~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 15 IDSADLLVA----NLVNENFVLSEKLD--TKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----CHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 334455653 35566666566544 45677888888888777766
No 177
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=47.85 E-value=65 Score=27.45 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhhhhh
Q 016220 68 SKNAITFHLCRGTYEY 83 (393)
Q Consensus 68 d~lrqElqr~R~a~Ey 83 (393)
++||.=|...+..++.
T Consensus 49 Helr~pL~~i~~~~~~ 64 (268)
T 4ew8_A 49 YELRTPLTTIIGYSEL 64 (268)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3334444445544444
No 178
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.76 E-value=53 Score=33.70 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
.+++.++..|-.+...|.+|..+|.
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 179
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=47.73 E-value=51 Score=32.09 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016220 100 KNYITMATEVEKLRAELM 117 (393)
Q Consensus 100 KnlisMarEvEKLRaEla 117 (393)
|++....+|+|+.|..+.
T Consensus 141 k~Y~~~cke~e~A~~k~~ 158 (406)
T 4dyl_A 141 SQYRALARDSAQAKRKYQ 158 (406)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555555555554443
No 180
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=47.67 E-value=41 Score=27.53 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
.||+.|.+.+..+..-|.-=-..=.++=|.+..+|.|+......||+=..||.+|.+
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433222223356678888999999999999999999987743
No 181
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.33 E-value=1.1e+02 Score=24.76 Aligned_cols=32 Identities=3% Similarity=-0.200 Sum_probs=18.1
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRG 79 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~ 79 (393)
.|-.+|+.|...+ ..|+-||+.|+++-..+-.
T Consensus 10 qLE~KIq~avdtI--~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 10 KLEAKVQQAIDTI--TLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4666777777752 3355566666655444333
No 182
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=47.17 E-value=9.7 Score=35.55 Aligned_cols=67 Identities=4% Similarity=-0.073 Sum_probs=40.0
Q ss_pred chhHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhhhhhhhhc--cc---hhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHC--YCAIFLKIWSKNAITFHLCRGTYEYEKK--FY---NDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 46 ~~~~~~~~~~~~~--~~~~l~~Eid~lrqElqr~R~a~EyEKK--~~---~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+|.+.|-+|...+ ...-+++.|+.+|++|..+-+.+--.+. .. .-.-|+.+.+|+-+..|-.++++|
T Consensus 71 ELnS~IGla~~~~~~~~~~~~~~L~~IQ~~Lfdlga~Latp~~~~~~~~~~i~~~~v~~LE~~Id~~~~~lppl 144 (223)
T 2nt8_A 71 ELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAV 144 (223)
T ss_dssp HHHHHHHHHHTTCCGGGGGGHHHHHHHHHHHHHHHHHHTSCTTCSSCCCCCCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 3556666655443 2234788899999999988776644321 11 112367777777666665555544
No 183
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.00 E-value=39 Score=30.95 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
|+..+..|+.|+..+|.-++.-+ .++.-+...|++-|..+-.+.+.|+
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665553322 2333334444444444333333333
No 184
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=46.94 E-value=13 Score=39.89 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh-----ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEK-----KFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEK-----K~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
++.||+.++.++..+++.-+-++ ..-...-|++++||+.|-++-+|.++|=
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~~~k~l~ 691 (771)
T 1h2v_C 636 IQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLF 691 (771)
T ss_dssp HHHHHHHC-----------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666655432211111 0011123677788888888777766653
No 185
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=46.93 E-value=26 Score=28.99 Aligned_cols=9 Identities=22% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHh
Q 016220 68 SKNAITFHL 76 (393)
Q Consensus 68 d~lrqElqr 76 (393)
..+.+|+++
T Consensus 70 ~~~~~~~q~ 78 (143)
T 1u2m_A 70 MAQRQTFAQ 78 (143)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 186
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=46.93 E-value=66 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016220 96 QVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElan 118 (393)
+.||--|-.+..+|+++|.|+..
T Consensus 220 ~~~~p~~~~l~~~l~~~r~~~~~ 242 (265)
T 2q12_A 220 EQLEEFLANIGTSVQNVRREMDS 242 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888888888887654
No 187
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=46.87 E-value=23 Score=35.60 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDH-LESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~-~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|..+|..|+..|+.++..++.-++...+. -.=.+.|+.=|-....+|++|...+..
T Consensus 297 l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~ 353 (483)
T 2j1d_G 297 LDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAE 353 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888777654321110 001234554444444555555554443
No 188
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=46.73 E-value=59 Score=25.73 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=31.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 48 YYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
...|+.-.+-+++..++.++..+.+++..+.. .+..+ .++.+++|+.+|+-+|.+
T Consensus 88 ~~~i~~y~~~v~~~~~~r~l~~~~~~i~~~~~------~~d~~----------~~l~~~~el~~l~~~l~~ 142 (143)
T 2r6a_C 88 EQELEDYIRHVLNRPKWLMLKVKEQEKTEAER------RKDFL----------TAARIAKEMIEMKKMLSS 142 (143)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH------TTCHH----------HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh------CCCHH----------HHHHHHHHHHHHHHhhcc
Confidence 34566666667777777777777777765532 11111 123455677777776643
No 189
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=46.68 E-value=30 Score=26.44 Aligned_cols=42 Identities=19% Similarity=-0.049 Sum_probs=30.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHH
Q 016220 54 AFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESL 95 (393)
Q Consensus 54 ~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~ 95 (393)
..|.+-...|..++|....+|+..-..++.|||..-++|-++
T Consensus 13 ~~q~~ae~~L~~~lE~~~~~Lee~t~~L~~EK~ktd~LL~~m 54 (66)
T 3hls_A 13 GEQFREEYKLTQELEMLTDRLQLTLRALEDEKKKTDTLLYSV 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334434445777778888888888888888888888877764
No 190
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=46.65 E-value=65 Score=28.33 Aligned_cols=87 Identities=10% Similarity=-0.108 Sum_probs=63.6
Q ss_pred hhhccccccccCCCchhHHHHHHHHhHHHHH--------------------HHHHHHHHHHHHHhhhhhhhhhhcc----
Q 016220 32 ALHFGHPWICESSSPQYYFLHLAFQHCYCAI--------------------FLKIWSKNAITFHLCRGTYEYEKKF---- 87 (393)
Q Consensus 32 ~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~--------------------l~~Eid~lrqElqr~R~a~EyEKK~---- 87 (393)
+.+|.-.--.|....|.-+++.++++|-+.+ +.++.|.|+.++.-++..++-.+..
T Consensus 31 ~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~TN~~~~~~~~~tl~eaia~rd~L~~~~~~l~~~~~~a~~~~~ry 110 (154)
T 3kdq_A 31 AKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNSVTEFSEGMTLADALSVRDALLKKRTLYSDLADQLTSRQDRY 110 (154)
T ss_dssp TEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred CeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4555555567766778889999999998887 3789999999999999988876532
Q ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 88 -----YNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 88 -----~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+.--+=-..++.|-...+++|+-+|-..|..
T Consensus 111 s~sEIk~vs~vdv~~~qk~ad~l~k~~r~Ld~~IQ~ 146 (154)
T 3kdq_A 111 SRSEIKYVATMDAREIRKKADLAAKEYRQLDVDIQR 146 (154)
T ss_dssp STTSCCEEESSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhheeccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111223567788888889988888777653
No 191
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=46.64 E-value=36 Score=26.05 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 123 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElanae~~~ 123 (393)
++=|.+..+|.|+.....-|++=..||.+|.+-.
T Consensus 35 eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 68 (77)
T 1jth_B 35 SQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999998876543
No 192
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=46.58 E-value=41 Score=28.44 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a 80 (393)
.++||+.|.+|++.++.+
T Consensus 16 ~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 16 SQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666555444
No 193
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.45 E-value=23 Score=26.14 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016220 97 VMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaEla 117 (393)
.||+--..|..||+.|+.|+.
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555543
No 194
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.42 E-value=35 Score=25.67 Aligned_cols=18 Identities=6% Similarity=-0.088 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a 80 (393)
|+.+|+.|+.|++.+|.-
T Consensus 42 L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 42 LKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666555543
No 195
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.37 E-value=50 Score=33.88 Aligned_cols=12 Identities=8% Similarity=0.351 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhc
Q 016220 107 TEVEKLRAELMN 118 (393)
Q Consensus 107 rEvEKLRaElan 118 (393)
..+|+|+..|.+
T Consensus 175 ~~~~~l~~ki~~ 186 (464)
T 1m1j_B 175 AVIDSLHKKIQK 186 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 196
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=46.34 E-value=39 Score=31.18 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~Ey 83 (393)
+++|+.++.+|..+++.++.
T Consensus 76 ~a~l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 76 KAALASYQAQLVARKTAYDV 95 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 197
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=46.32 E-value=29 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
.++=|.+..+|.|+.....-|++=..||.+|.+
T Consensus 34 ~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 34 IEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999999999999999987753
No 198
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=46.30 E-value=38 Score=26.36 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 016220 89 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 89 ~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~~~ 124 (393)
.++=|.+..+|.|+-....-|++=..||.+|.+-.+
T Consensus 45 ~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 80 (83)
T 1sfc_B 45 ESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356678889999999999999999999998765443
No 199
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=46.29 E-value=14 Score=34.17 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhH---HHHHHHHHHHHHHHHHHhhhhhhhhh----hccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHC---YCAIFLKIWSKNAITFHLCRGTYEYE----KKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 47 ~~~~~~~~~~~~---~~~~l~~Eid~lrqElqr~R~a~EyE----KK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
|.+.|-+|...+ ...-+++.|+.+|++|..+-+.+--. ++...-.-|+.+.+|+-+..|-.++++|
T Consensus 48 LnS~IGla~~~~~~~~~~~~~~~L~~IQ~~Lfdlga~Latp~~~~~~~~~i~~~~v~~LE~~Id~~~~~l~pl 120 (208)
T 2ah6_A 48 LNSFVGSAITQLDENTFADIRGELFKIQHELFDCGGDLAMLKVKEDRPYKAKQEIVDFLEQRIDAYIKEAPEL 120 (208)
T ss_dssp HHHHHHHHHHTSCTTTTHHHHHHHHHHHHHHHHHHHHHHCC------CCSCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHcCCCcccccccCCCHHHHHHHHHHHHHHHhhCCCC
Confidence 555565555444 22457888888999998887766443 1111112366677777666665555444
No 200
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=46.01 E-value=29 Score=26.57 Aligned_cols=47 Identities=9% Similarity=-0.082 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEv 109 (393)
+.-|.++|+.|+.||-.+|-.--- +..++..+.+.+-|++--|-..+
T Consensus 11 ~~EL~~~l~elk~ELf~LR~q~at---gql~n~~~ir~vRr~IARi~Tvl 57 (67)
T 2zjr_V 11 ATDFAKEIDARKKELMELRFQAAA---GQLAQPHRVRQLRREVAQLNTVK 57 (67)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHH---SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHHHHHHHH
Confidence 466899999999999999954332 66788999999999876665544
No 201
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=45.95 E-value=56 Score=25.13 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcc-chhhH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKF-YNDHL----ESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~-~~e~~----Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
|...|+.|+.++..+.+..+=+-.. +.+.. ...+.|..-|..|+.-|.+-.....++|.
T Consensus 26 l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d~ 89 (101)
T 3fav_A 26 LKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADE 89 (101)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888887766544322 11222 22335666666666666666666665554
No 202
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=45.81 E-value=70 Score=27.54 Aligned_cols=56 Identities=11% Similarity=-0.033 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMA-----TEVEKLRAELM 117 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMa-----rEvEKLRaEla 117 (393)
-..-|.++|++|++||-.+|-.--- +..|+..+.+.+-+++--|- +|.+.||.--.
T Consensus 15 s~eEL~~~L~eLK~ELf~LRfq~at---gqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk 75 (124)
T 3iz5_c 15 SKDDLTKQLAELKTELGQLRIQKVA---SSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYK 75 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3456899999999999999976543 36788899999999986554 34555665443
No 203
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=45.64 E-value=99 Score=24.44 Aligned_cols=31 Identities=6% Similarity=-0.052 Sum_probs=24.0
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 016220 46 PQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R 78 (393)
+|+..|....+| +.-|..-+..+.+|+++++
T Consensus 3 ~L~k~i~~l~~E--~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRE--NEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 588888888888 6667777777777777766
No 204
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=45.56 E-value=42 Score=32.21 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
|.++|+.++++|+++|.+|+-+...-.+++++.+..-+.+
T Consensus 252 ~~~~l~~~~~~L~~l~~~l~~~d~~l~~~~~~~~~~r~~~ 291 (341)
T 3ktd_A 252 LVKALDEALAILHEAREGLTAEQPNIEQLADNGYRSRIRY 291 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999865444444444444433333
No 205
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=45.51 E-value=20 Score=28.69 Aligned_cols=38 Identities=8% Similarity=-0.186 Sum_probs=24.7
Q ss_pred hhHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016220 47 QYYFLHLAFQH--CYCAIFLKIWSKNAITFHLCRGTYEYE 84 (393)
Q Consensus 47 ~~~~~~~~~~~--~~~~~l~~Eid~lrqElqr~R~a~EyE 84 (393)
+.+.++..++| ++..+-..|.+.|...|..++..++-+
T Consensus 17 ~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~ 56 (113)
T 3lof_A 17 YAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDAN 56 (113)
T ss_dssp HHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555 444444677788888888888888764
No 206
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=45.47 E-value=1e+02 Score=26.69 Aligned_cols=72 Identities=14% Similarity=-0.023 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhhhhhh-hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 47 QYYFLHLAFQHCYCA-IFLKIWSKNAITFHLCRGTYE-YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~-~l~~Eid~lrqElqr~R~a~E-yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++++|+..--||-++ -|+..|+.|..++-.+-.-+. .|.-.+++. --..++|+.|..---|+||.+++|..+
T Consensus 49 ~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~-~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 49 LQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVED-YFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544333332222 133334444444433333332 222223333 336788999988888999999999765
No 207
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=45.18 E-value=37 Score=26.00 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK 86 (393)
|..+|+.|+.++..+....+=|-.
T Consensus 25 i~~~l~~l~~~v~~L~~~W~G~A~ 48 (96)
T 3h6p_C 25 LQSLGADIASEQAVLSSAWQGDTG 48 (96)
T ss_dssp HHHHHHHHHHHHHHTGGGCCTTSS
T ss_pred HHHHHHHHHHHHHHHHhhCCCcHH
Confidence 789999999999999998876633
No 208
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.09 E-value=41 Score=26.42 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 016220 106 ATEVEKLRAEL 116 (393)
Q Consensus 106 arEvEKLRaEl 116 (393)
.+|++.|+.+|
T Consensus 67 ~~e~~~L~~~L 77 (80)
T 1nlw_A 67 QREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 209
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=45.06 E-value=17 Score=29.89 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016220 96 QVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElan 118 (393)
+.+++.+..+..|+++|+.++.+
T Consensus 114 ~~l~~~~~~l~~~l~~le~~~~~ 136 (139)
T 3eff_K 114 EAYTRTTRALHERFDRLERMLDD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666677777777776654
No 210
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=44.96 E-value=26 Score=31.74 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRa 114 (393)
+.++.||+++-.+.++++.|++
T Consensus 63 ~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 63 AVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555
No 211
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=44.81 E-value=41 Score=27.12 Aligned_cols=43 Identities=19% Similarity=0.031 Sum_probs=22.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHH
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVM 98 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~M 98 (393)
-++.|++|=+ .|..+|+.++.||.++ ..|.+.-.+.++|.|.|
T Consensus 28 AL~eaL~EN~--~Lh~~ie~~~eEi~~L----keEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 28 ALYEALKENE--KLHKEIEQKDSEIARL----RKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3556666633 3455666666666433 33444445556665544
No 212
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=44.39 E-value=1.1e+02 Score=23.60 Aligned_cols=66 Identities=5% Similarity=-0.081 Sum_probs=37.5
Q ss_pred HHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 51 LHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 51 ~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|..+.+.+.... |+.+|+.|+.++..+.+..+=+ +.....+..+.+.+....|..-|+.+..-|.+
T Consensus 5 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~--Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~ 72 (94)
T 4i0x_A 5 VGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGS--AADAYRSGWDEMQDGATKVWNALTDIASTLGS 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 7899999999999998765543 33333344444444444555555555444443
No 213
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.09 E-value=20 Score=24.47 Aligned_cols=14 Identities=0% Similarity=-0.202 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 016220 62 IFLKIWSKNAITFH 75 (393)
Q Consensus 62 ~l~~Eid~lrqElq 75 (393)
.|++||..|++|+.
T Consensus 6 alkqeiaalkkeia 19 (33)
T 4dzn_A 6 ALKQEIAALKKEIA 19 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 214
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=44.09 E-value=9.1 Score=34.26 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 110 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvE 110 (393)
-+++.|..+|++|..+-+.+- .++..+. -|+.+.+|+-+..|-.+++
T Consensus 49 ~~~~~L~~IQ~~Lf~lga~la-~~~~~i~-~~~v~~LE~~id~~~~~l~ 95 (172)
T 1wvt_A 49 ELSEVIQKLQNDIFSISSEIA-GFDMNFS-DEKVKGIEELITNYSKELE 95 (172)
T ss_dssp GGHHHHHHHHHHHHHHHHHHT-TCCCCCC-THHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCCCC-HHHHHHHHHHHHHHHhhCC
Confidence 366778888888888887776 5432222 2555556655554444433
No 215
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.70 E-value=25 Score=28.88 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016220 97 VMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaEla 117 (393)
.|.+.+..|.+|++.++..+.
T Consensus 66 ~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 66 QLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555443
No 216
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.34 E-value=26 Score=25.98 Aligned_cols=20 Identities=0% Similarity=-0.225 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 016220 61 AIFLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a 80 (393)
..|+.||+.|+.|+..++..
T Consensus 39 ~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 39 SELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666543
No 217
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.18 E-value=19 Score=28.09 Aligned_cols=13 Identities=15% Similarity=-0.069 Sum_probs=6.5
Q ss_pred HHHHHHHhHHHHH
Q 016220 50 FLHLAFQHCYCAI 62 (393)
Q Consensus 50 ~~~~~~~~~~~~~ 62 (393)
.-++||-|=|+..
T Consensus 18 ~AQRafReRK~~~ 30 (70)
T 1gd2_E 18 AAQRAFRKRKEDH 30 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455665544433
No 218
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.07 E-value=72 Score=26.64 Aligned_cols=20 Identities=0% Similarity=-0.230 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 016220 62 IFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~ 81 (393)
-|++++..|++.|...-+++
T Consensus 22 ~l~~~~~el~~~l~~~~~~~ 41 (125)
T 1joc_A 22 KLQTKVLELQRKLDNTTAAV 41 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555543
No 219
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.05 E-value=46 Score=30.48 Aligned_cols=19 Identities=5% Similarity=-0.209 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
|+.||..|+.+...++.-|
T Consensus 93 Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666655555544
No 220
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=43.04 E-value=63 Score=30.30 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=27.7
Q ss_pred eeeeeeeccchhhhHHhhhhhhcccc-ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 016220 13 CTLIFTCTLDFLFRQVYSKALHFGHP-WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRG 79 (393)
Q Consensus 13 ~~~~~~~~~d~~~~~~~~k~~h~~h~-l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~ 79 (393)
++|.|+-+++|.. +.|- |-..+...-.++-+++.+= -.+|+++..|.++|++.|.
T Consensus 137 a~L~fVE~~eFK~---------l~hLSL~f~~asde~Ik~yLa~R~---~~lK~kl~~l~~~L~~~~~ 192 (228)
T 3q0x_A 137 SVFKIVEINDEKQ---------LPHITLAFRPGNDSVVKQFLAFRL---SEVKGTCHDLSDDLSRTRD 192 (228)
T ss_dssp EEEEEEEEETTEE---------EEEEEEEEEECCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEccCcce---------EEEEEEEeecCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5677777776632 2233 2333333334444444322 2356666666666666654
No 221
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=42.78 E-value=42 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHH
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESL 95 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~ 95 (393)
.|-.++.=|.+++..+.-+=.-..+.++.|
T Consensus 42 ~W~~aq~al~rL~eq~g~~~~ds~~v~~~m 71 (302)
T 3ibp_A 42 VWLAAQNSLNQLSEQCGEEFTSSQDVTEYL 71 (302)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcCCCHHHHHHHH
Confidence 344444445555554422222223344444
No 222
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=42.63 E-value=32 Score=30.59 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDH---LESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~---~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
...++++|+.++.+|..++..++-.+++..+. -+++...+.++...-.+|+.++++|
T Consensus 62 l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l 121 (277)
T 2f1m_A 62 YDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAV 121 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777776666655554322 1233333334444443444444443
No 223
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.54 E-value=1e+02 Score=31.15 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 016220 102 YITMATEVEKLRAELM 117 (393)
Q Consensus 102 lisMarEvEKLRaEla 117 (393)
|.+....|.+|+..|.
T Consensus 114 ~~~~~~~i~~L~~~v~ 129 (411)
T 3ghg_C 114 YNSNNQKIVNLKEKVA 129 (411)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 224
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.44 E-value=53 Score=33.22 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhcCCC
Q 016220 105 MATEVEKLRAELMNAPN 121 (393)
Q Consensus 105 MarEvEKLRaElanae~ 121 (393)
|-.-||+||.||...|.
T Consensus 139 Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344555555555443
No 225
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=42.40 E-value=22 Score=33.22 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.+++|++.|+.|++.+.+.|+ ++.+++..++-.++--++-+.+|.++|.+
T Consensus 152 ~~~~~i~ql~~En~~le~~Ie-------~Lk~e~~e~~te~~p~~k~~~qly~~vt~ 201 (250)
T 2ve7_C 152 SSADKMQQLNAAHQEALMKLE-------RLEKEVDEDTTVTIPSAVYVAQLYHQVSK 201 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC--------------------CTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 356677777777666544332 22333455555555556777778777765
No 226
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=42.34 E-value=11 Score=34.01 Aligned_cols=55 Identities=5% Similarity=-0.195 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
|.+.|-+|...+...-+++.|+.+|++|..+-+.+--.++..+. -|+.+.+|+-+
T Consensus 42 lns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~la~~~~~~i~-~~~v~~LE~~i 96 (183)
T 2zhy_A 42 LNSQIGVLLAEPLPDDVRAALSAIQHDLFDLGGELCIPGHAAIT-DAHLARLDGWL 96 (183)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHSTTCCCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHH
Confidence 55555555443333457888889999998887766544221111 24444455433
No 227
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=42.19 E-value=38 Score=26.44 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.|+.||..|++|+.-.=+.=||=|=++ +...+.-|-.|||+|..+|..
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaK---------L~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTK---------NNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhc
Confidence 478888888888887777666666554 446677888899999998875
No 228
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=41.77 E-value=35 Score=31.46 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..+++++..+.+++|.+.-++-.-- ...+++..+.++.....+++.++++|+
T Consensus 102 ~a~a~l~~a~~~~~r~~~L~~~~~~----s~~~~~~a~~~~~~a~a~l~~a~~~l~ 153 (359)
T 3lnn_A 102 KARAAMTMARRNLDRQRELDKSEIA----AKRDFEQAQSDYDQAASESQRADARLA 153 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCC----CCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777788777765432211 112233334444444444444444444
No 229
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=41.67 E-value=9.1 Score=34.89 Aligned_cols=64 Identities=8% Similarity=-0.069 Sum_probs=34.0
Q ss_pred hhHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhhhhhhhhh---------ccchhhHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYC--AIFLKIWSKNAITFHLCRGTYEYEK---------KFYNDHLESLQVMEKNYITMATEVEK 111 (393)
Q Consensus 47 ~~~~~~~~~~~~~~--~~l~~Eid~lrqElqr~R~a~EyEK---------K~~~e~~Eq~q~MEKnlisMarEvEK 111 (393)
|.+.|-+|...+.. ..+++.|+.+|++|..+-+.+--.+ +..+ .-|+.+.+|+-+..|-.++.+
T Consensus 38 lns~iGla~~~~~~~~~~~~~~L~~IQ~~Lf~lga~La~p~~~~~~~~~~~~~i-~~~~v~~LE~~Id~~~~~lpp 112 (196)
T 2idx_A 38 LSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATPCSSAREAHLKYTTF-KAGPILELEQWIDKYTSQLPP 112 (196)
T ss_dssp HHHHHHHHHTTCCSSCCHHHHHHHHHHHHHHHHHHHHCC--------------C-CSHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccCC-CHHHHHHHHHHHHHHHhhCCC
Confidence 45555555544432 2477788888888888865543321 1111 125556666655555444443
No 230
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=41.37 E-value=14 Score=34.37 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhHHH---HHHHHHHHHHHHHHHhhhhhhhhh--hccchhhHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYC---AIFLKIWSKNAITFHLCRGTYEYE--KKFYNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 47 ~~~~~~~~~~~~~~---~~l~~Eid~lrqElqr~R~a~EyE--KK~~~e~~Eq~q~MEKnlisMarEv 109 (393)
|.+.|-+|.-.|.. .-++++|+.+|++|..+=+.+--. ++...-.-|+.+.+|+-+..|..++
T Consensus 56 LnS~IGla~~~~~~~~~~~~~~~L~~IQ~~Lf~lga~LAtp~~~~~~~i~~~~v~~LE~~ID~~~~~l 123 (213)
T 3ke4_A 56 ANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEA 123 (213)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHHHHHHHHHHHHHHHHHHTBSSSSSCCCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHhHHhcCCCCccCCCCCHHHHHHHHHHHHHHHhcC
Confidence 55555555544432 247788899999998887766431 1111112344555565544444433
No 231
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.23 E-value=34 Score=27.62 Aligned_cols=8 Identities=0% Similarity=-0.309 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 016220 65 KIWSKNAI 72 (393)
Q Consensus 65 ~Eid~lrq 72 (393)
+||+.||+
T Consensus 56 ~~i~~Lr~ 63 (93)
T 3s4r_A 56 EEMRELRR 63 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 232
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=41.17 E-value=7.2 Score=39.02 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016220 98 MEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEla 117 (393)
.+..|-.+..+|++|..||.
T Consensus 92 a~~e~~~l~~~l~~le~~l~ 111 (371)
T 1zbt_A 92 AKEELKNSKVAKEEYEEKLR 111 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777776654
No 233
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=41.10 E-value=15 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRa 114 (393)
+.+..++|++..+..+|+|.+.
T Consensus 121 ~~~~k~~k~~~~~~~~l~kaKk 142 (290)
T 3i2w_A 121 DLFKKAQKPWAKLLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544
No 234
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=40.99 E-value=22 Score=43.38 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.4
Q ss_pred eeeeeeee-eeeccchhhhHHhhhhhhcccc
Q 016220 9 LEIRCTLI-FTCTLDFLFRQVYSKALHFGHP 38 (393)
Q Consensus 9 ~~~~~~~~-~~~~~d~~~~~~~~k~~h~~h~ 38 (393)
|..++||+ ||.|.+++..|+....+..+.|
T Consensus 2112 i~~~vt~iNFtvT~~GLedQLL~~vv~~ErP 2142 (2695)
T 4akg_A 2112 LRSRVRLVHFVTNKESIETRIFDITLTEENA 2142 (2695)
T ss_dssp HHHHEEEEECCCCSHHHHHHHHHHHHHHHCH
T ss_pred HHhheeEEEEEEcHHHHHHHHHHHHHHHhCh
Confidence 44566665 8999999998888876666655
No 235
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=40.88 E-value=44 Score=36.15 Aligned_cols=58 Identities=9% Similarity=-0.085 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVME---KNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ME---KnlisMarEvEKLRaElanae 120 (393)
|+..|+.|.+|++...+.++..+....|..+-.++|. +-+|..|+-.-+|+.||+..+
T Consensus 173 l~~G~~~li~~~~~~~~~~~~~~~~~~~k~~fy~A~~i~~eavi~~a~Rya~la~elA~~e 233 (787)
T 1r9d_A 173 LRVGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNT 233 (787)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6889999999999888877643333344444444443 444444444455666666544
No 236
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.88 E-value=37 Score=26.18 Aligned_cols=27 Identities=4% Similarity=0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++.+.|+.-+-.+-+|++.|+++|...
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566667777778888888888754
No 237
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=40.86 E-value=82 Score=29.34 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCCC
Q 016220 109 VEKLRAELMNAPN 121 (393)
Q Consensus 109 vEKLRaElanae~ 121 (393)
|+++|++|++.+|
T Consensus 314 l~~~~~~~~~~~~ 326 (326)
T 3fxb_A 314 LKQMKADLAATAN 326 (326)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHhcC
Confidence 5778888887654
No 238
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=40.67 E-value=22 Score=26.90 Aligned_cols=44 Identities=5% Similarity=-0.199 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMA 106 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMa 106 (393)
..-|.++|++|++||-.+|-.--- +..++..+.+.+-|++--|-
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~at---gql~n~~~ir~vRr~IARi~ 54 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAAS---GQLQQSHLLKQVRRDVARVK 54 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT---TCCSCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CCCcCcHHHHHHHHHHHHHH
Confidence 456899999999999999975544 45678888888877765543
No 239
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.65 E-value=92 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=15.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 016220 92 LES-LQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 92 ~Eq-~q~MEKnlisMarEvEKLRaEla 117 (393)
+++ ++.+.+.|-.+-.|+.+|.+||.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 66666666666666666666553
No 240
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=40.54 E-value=86 Score=26.98 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH-----HHHHHHHHHhc
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT-----EVEKLRAELMN 118 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar-----EvEKLRaElan 118 (393)
-..-|.++|++|+.||-.+|-.--- .+-.|+..+++.+-+++--|-. |.|.||.--.+
T Consensus 14 s~eEL~~~L~eLK~ELf~LRfq~at--ggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~ 76 (124)
T 4a17_U 14 TEEQLVGELGKLQTELSQLRIAKIA--GGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFKG 76 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456899999999999999964321 1258899999999999876653 45555554443
No 241
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=40.42 E-value=36 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.|+.||..|+.|+.-.=+.=||=|=++ +...+.-|-.|||+|..+|..
T Consensus 27 ~lk~E~~~lk~E~~stSaQDeFAKWaK---------L~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 27 AKVKERHELKEFNNSISAQDNYAKWTK---------NNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHTTSCTTTCHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888877777666666544 345677778888888888764
No 242
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.22 E-value=56 Score=31.89 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016220 100 KNYITMATEVEKLRA 114 (393)
Q Consensus 100 KnlisMarEvEKLRa 114 (393)
+.|..+...|.+|+.
T Consensus 40 ~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444443
No 243
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=40.20 E-value=35 Score=25.40 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 88 YNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 88 ~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|..++...+.+|..-.-+-+|||.|++=|.
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 444566667777777777788888887654
No 244
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=40.00 E-value=1.6e+02 Score=26.90 Aligned_cols=57 Identities=7% Similarity=-0.035 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLE---SLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~E---q~q~MEKnlisMarEvEKLRaElana 119 (393)
+++.++.+++-++.++.-++.-.....|.++ ++...+.+++..-.+++..+.+|...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~~~~~l~~a~~~~~~a~~~L~~l 185 (428)
T 1ek9_A 126 TQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQI 185 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777777777666666666655 45667788888888888888888754
No 245
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.99 E-value=54 Score=25.86 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=9.3
Q ss_pred hHHHHHHHHhHHHHHH
Q 016220 48 YYFLHLAFQHCYCAIF 63 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~l 63 (393)
..++++||||--...|
T Consensus 18 ~LE~klAfqE~tIeeL 33 (78)
T 3efg_A 18 ELETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777777333334
No 246
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=39.93 E-value=1.1e+02 Score=26.12 Aligned_cols=39 Identities=10% Similarity=-0.059 Sum_probs=23.3
Q ss_pred ccccCCCchhHHHHHHHHhHHHH----HHHHHHHHHHHHHHhhhh
Q 016220 39 WICESSSPQYYFLHLAFQHCYCA----IFLKIWSKNAITFHLCRG 79 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~----~l~~Eid~lrqElqr~R~ 79 (393)
.|+|. +.+..++.|.+.|+.- .|..|+..+++|++....
T Consensus 19 aI~es--eeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~ 61 (151)
T 2pih_A 19 MISET--EEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKH 61 (151)
T ss_dssp HHTTB--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665 3455555555554421 256777778888777654
No 247
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=39.76 E-value=40 Score=35.15 Aligned_cols=45 Identities=13% Similarity=-0.118 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-----hccchhhHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYE-----KKFYNDHLESLQVMEKNYITMATE 108 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyE-----KK~~~e~~Eq~q~MEKnlisMarE 108 (393)
.+|.+.|...|..++..++-+ |+...+.+++++.+-+.++.-..|
T Consensus 577 ~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e 626 (675)
T 3d2f_A 577 DAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLA 626 (675)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776433 344444566666555555543333
No 248
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=39.55 E-value=13 Score=30.82 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=40.1
Q ss_pred eeeeeeccch---hhhHHhhhhhhcc--ccccccCCCchhHHHHHHHHhHHHHHH----HHHHHHHH
Q 016220 14 TLIFTCTLDF---LFRQVYSKALHFG--HPWICESSSPQYYFLHLAFQHCYCAIF----LKIWSKNA 71 (393)
Q Consensus 14 ~~~~~~~~d~---~~~~~~~k~~h~~--h~l~~e~~~~~~~~~~~~~~~~~~~~l----~~Eid~lr 71 (393)
+-++|-|++| .+..|++|-|.++ |.|=+-.+.-+.-.+-.-+++.+++.| ..||+.++
T Consensus 4 dYekTfkiEilnEfs~~vy~rvln~Vlnheldk~ds~~l~vnLLnQL~~a~~VnLF~~sl~eL~~v~ 70 (90)
T 1gvn_A 4 TYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVH 70 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTCTTSHHHHHHHHHHHHHTSCGGGSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHhHHHHHHHHHHHHHHhhHHHhhHHHHHHHH
Confidence 3467777887 5789999999998 998887766555555445555555544 56666654
No 249
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=39.28 E-value=24 Score=29.37 Aligned_cols=19 Identities=0% Similarity=-0.272 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
|+.+|+.|+.+|.+++.++
T Consensus 21 l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 21 LNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 250
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.23 E-value=58 Score=25.07 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016220 98 MEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEl 116 (393)
|++..-.|..|+++|+.|+
T Consensus 52 L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 251
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=39.22 E-value=59 Score=28.62 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=22.5
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 77 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 77 ~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
++-++|.|.+.+. -+.+.=||.|..--.++||||.
T Consensus 39 Lq~T~E~E~q~~~---~kk~~Aekql~~Ake~~eKlkK 73 (136)
T 3ter_A 39 LRRTCENEMAFLE---KQRQDCFKEMKEAIEMVDRLQK 73 (136)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHH---HccccHHHHHHHHHHHHHHHHH
Confidence 3446666665543 3455667777777777788775
No 252
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=38.96 E-value=1.4e+02 Score=23.56 Aligned_cols=30 Identities=0% Similarity=-0.242 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R 78 (393)
++..|....+| +.-|..-+..+++|+++++
T Consensus 2 ~~k~v~~l~~E--~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANE--KEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 45566677777 5566666666777777666
No 253
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=38.89 E-value=74 Score=25.94 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhh-------------hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 54 AFQHCYCAIFLKIWSKNAITFHLCRGTY-------------EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 54 ~~~~~~~~~l~~Eid~lrqElqr~R~a~-------------EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
-.+.|+.++-...++.|++-.++++.++ +.|+..+...- ...+|..+..+..||++|+.++.
T Consensus 36 ~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~--~~~l~~~~~~L~~ei~~v~~~~~ 110 (119)
T 3myf_A 36 TVEKIQTALGQNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQTP--VEDLEPEILELLDELTKVESAVK 110 (119)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCC--GGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455666666666655443 33443332211 12355667777777777777664
No 254
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=38.82 E-value=1.2e+02 Score=22.56 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHH-----hhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 49 YFLHLAFQHCYCAI--FLKIWSKNAITFH-----LCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 49 ~~~~~~~~~~~~~~--l~~Eid~lrqElq-----r~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..|....++|+..+ |+.+|+.|...-+ ..+..++-=++.-.+..+.++.+.+.|...|...+..-.+++
T Consensus 19 ~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~~a 94 (99)
T 3zbh_A 19 RQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIA 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544433 5566666644321 112222211222233444455555555555555555555554
No 255
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=38.80 E-value=40 Score=27.54 Aligned_cols=25 Identities=12% Similarity=-0.093 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHL 76 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr 76 (393)
-+..|++|-++ |..+|+.++.||.+
T Consensus 32 AL~eaL~EN~~--Lh~~ie~~~eEi~~ 56 (83)
T 1wlq_A 32 ALYEALKENEK--LHKEIEQKDSEIAR 56 (83)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34556666443 33444444444433
No 256
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=38.68 E-value=54 Score=29.37 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 111 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEK 111 (393)
.|++.|+.|-++.+.-|+ .||.....|...|+==||||.=.+++|.
T Consensus 5 qe~~~Le~Ek~~~~~rI~-~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 5 QECQNLEVERQRRLERIK-QKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777666 3444444343444444677776666663
No 257
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=38.58 E-value=81 Score=31.61 Aligned_cols=50 Identities=2% Similarity=-0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFY--NDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~--~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
|...++.++++|.++++.+|-.-..- ++-+ ..+ +.+.+..+..||++|..
T Consensus 181 l~~~~~~~r~~l~~~~~~ie~~idf~eei~~~-~~~-i~~~~~~l~~eL~~l~~ 232 (482)
T 1xzp_A 181 LRDFVDSLRRELIEVLAEIRVELDYPDEIETN-TGE-VVTRLERIKEKLTEELK 232 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTCCCC-HHH-HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhhhcCCCCccccch-HHH-HHHHHHHHHHHHHHHHH
Confidence 56678889999999988766332111 2211 233 66666667777777643
No 258
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=38.45 E-value=90 Score=30.21 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=44.8
Q ss_pred HHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHH----HHHHHHHHHHHHHHHHHHHhcC
Q 016220 51 LHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQV----MEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 51 ~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~----MEKnlisMarEvEKLRaElana 119 (393)
+...+..|+.-+ .+.+.+.+.+||...|..++--+...-+...+++. -...+..+-+|||.|++|+.+.
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~ 195 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYY 195 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 334445555555 37778888888888888887555554444443333 3345667888888888888743
No 259
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=38.23 E-value=31 Score=33.10 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc-cchhhHHHHHHHHH---HHHHHHHHHHHHHHH
Q 016220 65 KIWSKNAITFHLCRGTYEYEKK-FYNDHLESLQVMEK---NYITMATEVEKLRAE 115 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK-~~~e~~Eq~q~MEK---nlisMarEvEKLRaE 115 (393)
.+|..++.|+.+.|..|..+=. .--+..|-..+||| ++++.+.|.||+|..
T Consensus 101 ~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~ 155 (279)
T 3qwe_A 101 QPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQG 155 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6777777777777776643221 11122344445554 677888888887754
No 260
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=38.17 E-value=51 Score=28.28 Aligned_cols=56 Identities=5% Similarity=-0.029 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~~~ 124 (393)
+..++..+.++++.+|+.-+. +-|.|- .+..+.+--+-+-|..|..+|.++...+.
T Consensus 22 ~~~~r~~~~~~i~~A~~~GDl--sEnaey----~aak~~q~~~e~ri~~L~~~L~~a~vi~~ 77 (156)
T 2f23_A 22 ERERLQEATKILQELMESSDD--YDDSGL----EAAKQEKARIEARIDSLEDILSRAVILEE 77 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSCC--SCSHHH----HHHHHHHHHHHHHHHHHHHHHHHEEECCT
T ss_pred HHHHHHHHHHHHHHHHhcCCc--hhhhhH----HHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 455666666777777776444 112221 11111122245578888888888776554
No 261
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=38.05 E-value=1.1e+02 Score=26.37 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~Ey 83 (393)
+..|+.|++.+..-+.+|+-
T Consensus 78 ~~~l~~i~~~~~~Y~~~f~~ 97 (258)
T 2yfa_A 78 VKLLGELGDTISAYKLSLNK 97 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666643
No 262
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=37.99 E-value=1.5e+02 Score=27.35 Aligned_cols=7 Identities=0% Similarity=-0.154 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 016220 101 NYITMAT 107 (393)
Q Consensus 101 nlisMar 107 (393)
.|+.+..
T Consensus 223 ~~~~~~~ 229 (337)
T 2x3v_A 223 GMEQVFE 229 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 263
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=37.73 E-value=61 Score=30.53 Aligned_cols=32 Identities=6% Similarity=-0.100 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLES 94 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq 94 (393)
+...+..|++||++.|...+-+++.+++.|++
T Consensus 126 i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~ 157 (248)
T 4e29_A 126 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIEE 157 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455558888888888888887777766643
No 264
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=37.55 E-value=76 Score=30.86 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHH----------HHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYIT----------MATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlis----------MarEvEKLRaElan 118 (393)
+.|++.|+..++.-|... |||-.+.++-++++|+..+-. ++.++|.|++-|..
T Consensus 329 ~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 391 (406)
T 4dyl_A 329 QEMVTQLQQELRNEEENT--HPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEH 391 (406)
T ss_dssp HHHHHHHHHHHHHHHHHS--CTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcC--CcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 555666666666555544 466668888888777766543 34556667776654
No 265
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=37.55 E-value=51 Score=26.88 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 94 SLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 94 q~q~MEKnlisMarEvEKLRaEla 117 (393)
|+..+|.-|-...+.|+.|+.||.
T Consensus 57 ~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 57 SLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666666666664
No 266
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.49 E-value=1.1e+02 Score=22.01 Aligned_cols=20 Identities=20% Similarity=0.115 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016220 97 VMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaEl 116 (393)
.+.++|=.+..+|.||...|
T Consensus 37 ~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 37 EIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554444
No 267
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.44 E-value=1.9e+02 Score=27.98 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhhHHHHHH
Q 016220 67 WSKNAITFHLCRGTYEYEKKFYNDHLESLQV 97 (393)
Q Consensus 67 id~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ 97 (393)
++.|.+|+|..|..++-+.|...+..++++.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 3344444554444444444444444444433
No 268
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.32 E-value=80 Score=24.59 Aligned_cols=7 Identities=43% Similarity=0.619 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016220 107 TEVEKLR 113 (393)
Q Consensus 107 rEvEKLR 113 (393)
.|.+.||
T Consensus 50 ~en~~Lr 56 (70)
T 1gd2_E 50 LENDQLR 56 (70)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3333333
No 269
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=37.02 E-value=47 Score=22.88 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITF 74 (393)
Q Consensus 63 l~~Eid~lrqEl 74 (393)
+.+||...+||+
T Consensus 22 ileeikkakqei 33 (35)
T 2o6n_A 22 ILEEIKKAKQEI 33 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345555555554
No 270
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=36.78 E-value=1.4e+02 Score=29.37 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey 83 (393)
|-+|...+.||||.-|.|||-
T Consensus 145 ~~~~~~~~~~e~~~k~~a~~a 165 (373)
T 3hhm_B 145 LYEEYTRTSQEIQMKRTAIEA 165 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHH
Confidence 577778888888888888873
No 271
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=36.48 E-value=87 Score=27.19 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh---hhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYE---YEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~E---yEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
+.|.+||..++.+++-+-+.|+ -|+| |.+...++.=.+-..|.+|+++-
T Consensus 46 v~Ll~~LsaIk~ry~~L~~q~~~iaaeQk---e~~d~ir~tL~~tm~miQ~LQ~~ 97 (123)
T 4aj5_K 46 VTLLKELSVIKSRYQTLYARFKPVAVEQK---ESKSRICATVKKTMNMIQKLQKQ 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888888887777665 3444 56666677666777888887764
No 272
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=36.14 E-value=97 Score=26.59 Aligned_cols=12 Identities=8% Similarity=0.468 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 016220 101 NYITMATEVEKL 112 (393)
Q Consensus 101 nlisMarEvEKL 112 (393)
.++.|++.+|..
T Consensus 86 ~~l~i~~~lERI 97 (227)
T 1t72_A 86 GIYKIVSDLERM 97 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555554
No 273
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.04 E-value=91 Score=24.19 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccc-hhhHHHHHHHHHHHHHHHHHH
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFY-NDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~-~e~~Eq~q~MEKnlisMarEv 109 (393)
-..-|.++|++|+.||-.+|-.--- +. .++..+.+.+-|++--|-..+
T Consensus 10 s~~EL~~~L~elk~ELf~LR~q~at---gq~l~n~~~ir~vRr~IARi~Tvl 58 (72)
T 3j21_W 10 SIEEIDAKIRELRLQLAKERGLLTM---GTSLENPMVIRNLRRDIARLLTIK 58 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH---CCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999965432 33 588889999999987665444
No 274
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.94 E-value=65 Score=23.17 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 016220 99 EKNYITMATEVEKLRAELM 117 (393)
Q Consensus 99 EKnlisMarEvEKLRaEla 117 (393)
-++|..+..+|++.|.+|.
T Consensus 32 k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 32 KEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 275
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=35.63 E-value=56 Score=24.34 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..++.|+..|-.++++|.+.-..+.+
T Consensus 63 ~~~~~~~~~L~~i~~~L~~~A~~~~~ 88 (93)
T 4ioe_A 63 QAMQQYIPILEGISTDLKRIADKFRN 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444443
No 276
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.56 E-value=30 Score=34.63 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.+++..++++-.+.+|+++++.||.+
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (437)
T 4b4t_L 72 DQLKQRRQNIRDLEKLYDKTENDIKA 97 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667777777776654
No 277
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=35.43 E-value=26 Score=31.32 Aligned_cols=37 Identities=11% Similarity=-0.103 Sum_probs=22.2
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYE 84 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyE 84 (393)
|.+.|-+|...+. .-+++.|..+|++|..+-+.+--.
T Consensus 37 lns~iGla~~~~~-~~~~~~L~~IQ~~Lf~lga~la~~ 73 (172)
T 1wy1_A 37 LTSFIGEAKHYVD-EEMKGILEEIQNDIYKIMGEIGSK 73 (172)
T ss_dssp HHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4445555444333 346777777888887777666554
No 278
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.40 E-value=27 Score=25.78 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016220 98 MEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEl 116 (393)
+|+--..|..||+.|+.++
T Consensus 34 L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 34 LENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555544
No 279
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=35.28 E-value=39 Score=27.56 Aligned_cols=57 Identities=9% Similarity=-0.080 Sum_probs=32.1
Q ss_pred hHHHHHHHHhHHHHH-HHHHHHHHHHHH---HhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 48 YYFLHLAFQHCYCAI-FLKIWSKNAITF---HLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~-l~~Eid~lrqEl---qr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
....+.--++|+|.+ +|+.-|+|++=+ .+.|..++.|-+.-...+++ |-+|++-|-+
T Consensus 24 e~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~----------L~~eL~eL~a 84 (86)
T 1cxz_B 24 ELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDL----------LHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcC
Confidence 333334445555554 677788887766 44555666655554444444 4456666644
No 280
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.19 E-value=95 Score=31.22 Aligned_cols=22 Identities=5% Similarity=0.134 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016220 95 LQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLRaEl 116 (393)
+..++++|..+...|.+|...+
T Consensus 114 ~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 114 HIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhhHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555433
No 281
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=35.13 E-value=63 Score=34.22 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 016220 96 QVMEKNYITMATEVEKLRAELMNAPNVDRR 125 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElanae~~~~~ 125 (393)
+.+-.++..+...+++|...|.+-|=..|.
T Consensus 89 ~e~~~k~~~~l~~~~~lq~~ll~~EL~eWK 118 (596)
T 1bg1_A 89 RSIVSELAGLLSAMEYVQKTLTDEELADWK 118 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445556666666666654444443
No 282
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=35.13 E-value=58 Score=23.92 Aligned_cols=11 Identities=9% Similarity=-0.073 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q 016220 66 IWSKNAITFHL 76 (393)
Q Consensus 66 Eid~lrqElqr 76 (393)
.||.+++||.|
T Consensus 31 IIeAi~~El~~ 41 (45)
T 1use_A 31 IIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34556666554
No 283
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=34.99 E-value=29 Score=34.90 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
|..+|..|++.|..+...++
T Consensus 286 l~~dl~~L~~~l~~v~~~l~ 305 (457)
T 3obv_E 286 LQKSLDQMKKQIADVERDVQ 305 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777766554
No 284
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.90 E-value=1.8e+02 Score=23.45 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+|+..-.|...+=.-.|+|...-. ..++..|-..|=.--+||+||+.||.+
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p--~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIP--PQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC--TTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344455543221 233445555555566666666666644
No 285
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.73 E-value=32 Score=25.42 Aligned_cols=14 Identities=0% Similarity=-0.180 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhh
Q 016220 65 KIWSKNAITFHLCR 78 (393)
Q Consensus 65 ~Eid~lrqElqr~R 78 (393)
.|+|.|++|+..+|
T Consensus 19 ~d~eaLk~E~~eLk 32 (53)
T 2yy0_A 19 PEIELLRLELAEMK 32 (53)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444333
No 286
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=34.42 E-value=97 Score=27.50 Aligned_cols=26 Identities=8% Similarity=-0.043 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 92 LESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
-...+.|+.=+-++-+|||++.+||.
T Consensus 157 ~~~~~~~~~~~~~~e~~~~~~~~~~~ 182 (202)
T 2p4w_A 157 TYIENTMRRLAEENRQIIEEIFRDIE 182 (202)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455677777788999999999994
No 287
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=34.41 E-value=20 Score=34.14 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
|..+|..|++++..++..++
T Consensus 215 l~~~l~~l~~~~~~~~~~l~ 234 (340)
T 1v9d_A 215 LQKSLDQMKKQIADVERDVQ 234 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766554
No 288
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=34.28 E-value=28 Score=28.97 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
-.|+.||..|+.|+.-.=+.=||=|=++ +...+.-|-.|||+|..+|..
T Consensus 33 ~~lk~E~~~lk~E~~stSaQDEFAKWAK---------L~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 33 LAKVKERHELKEFNNSISAQDNYAKWTK---------NNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCHHHHHH---------HHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999887777777766554 345677788899999988864
No 289
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=34.27 E-value=27 Score=31.35 Aligned_cols=50 Identities=16% Similarity=0.029 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhh--------hhhhhhhccchhhHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 016220 66 IWSKNAITFHLCR--------GTYEYEKKFYNDHLESLQVMEKNYI-----TMATEVEKLRAE 115 (393)
Q Consensus 66 Eid~lrqElqr~R--------~a~EyEKK~~~e~~Eq~q~MEKnli-----sMarEvEKLRaE 115 (393)
.|+.+.++++.+| ++|+.||+.|.-+--....+.+++. +.+....+||+.
T Consensus 188 ~l~~~~~~v~~~~~~g~~~~~tti~~e~~~Npfl~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 250 (254)
T 1xm8_A 188 VLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALGIIRKA 250 (254)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEHHHHHHHCGGGCTTCHHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCCccHHHHhhcCCeecCCCHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 3445555555555 5889999988765433334444443 345556777764
No 290
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=34.24 E-value=41 Score=24.74 Aligned_cols=8 Identities=38% Similarity=0.372 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 016220 110 EKLRAELM 117 (393)
Q Consensus 110 EKLRaEla 117 (393)
|-||.||.
T Consensus 33 eAi~~El~ 40 (45)
T 1use_A 33 EAFVQELR 40 (45)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555554
No 291
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.22 E-value=69 Score=21.83 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 016220 61 AIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R 78 (393)
+.|+.||..|+-|+..+.
T Consensus 12 aalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 12 AALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777766665543
No 292
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=34.15 E-value=43 Score=23.25 Aligned_cols=25 Identities=4% Similarity=-0.225 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a~ 81 (393)
|-|+.-|..|-..|+.|+.|+|.-+
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3456667888888888888887643
No 293
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.94 E-value=1.1e+02 Score=30.86 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh---hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 60 CAIFLKIWSKNAITFHLCRGT---YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a---~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
...|++|+..+.+||..+... .+--|+.-.++-++++.+|+.+-.+..|++.|-..|=|.
T Consensus 47 ~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 47 INRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344788888888888765433 222233444566788888888888877777666666553
No 294
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=33.79 E-value=21 Score=32.68 Aligned_cols=22 Identities=0% Similarity=-0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 016220 62 IFLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~Ey 83 (393)
.+-.|+..+|+|++.+..-||.
T Consensus 185 ~~d~~m~~i~~~i~~~~~~~~~ 206 (226)
T 2be3_A 185 QLDEEMGEIRDDIQEAQALFDP 206 (226)
T ss_dssp HHHHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 3566777777777766555543
No 295
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=33.68 E-value=1.7e+02 Score=23.63 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
.+||..-.|...+=.-.|+|...- -..++..|-..|-.--+||+||+.||
T Consensus 52 ~~ie~~ldEA~eLl~qMelE~r~~--p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 52 RDFDEKQQEANETLAEMEEELRYA--PLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355555555555555666776543 24557777778888888889998887
No 296
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=33.52 E-value=73 Score=24.71 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 92 LESLQVMEKNYITMAT 107 (393)
Q Consensus 92 ~Eq~q~MEKnlisMar 107 (393)
+|+.|.+-|.|-.|.+
T Consensus 30 le~eqraRk~LE~~vr 45 (61)
T 3l4f_A 30 LEEEQRARKDLEKLVR 45 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 297
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.51 E-value=45 Score=24.87 Aligned_cols=9 Identities=44% Similarity=0.361 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 016220 106 ATEVEKLRA 114 (393)
Q Consensus 106 arEvEKLRa 114 (393)
-.|+.+|+.
T Consensus 50 ~~e~~~Lk~ 58 (63)
T 2wt7_A 50 LKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 298
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=32.65 E-value=93 Score=33.72 Aligned_cols=19 Identities=0% Similarity=-0.188 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~ 81 (393)
+.+|++.|.+|+++++..+
T Consensus 798 ~~~~~~rl~k~~~~~~~~~ 816 (862)
T 1gax_A 798 VEEWRRRQEKRLKELLALA 816 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444
No 299
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=32.40 E-value=57 Score=28.04 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATE 108 (393)
Q Consensus 93 Eq~q~MEKnlisMarE 108 (393)
+++..+-..+..+|+.
T Consensus 81 ~~le~l~~~i~~~a~~ 96 (180)
T 1s94_A 81 EELEELMTDIKRTANK 96 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 300
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.39 E-value=54 Score=24.28 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElana 119 (393)
..||.--..+..||+.|+.|+...
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777777777643
No 301
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=32.34 E-value=18 Score=25.01 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 016220 50 FLHLAFQHCYCAIFLKIWSKNAITFHLC 77 (393)
Q Consensus 50 ~~~~~~~~~~~~~l~~Eid~lrqElqr~ 77 (393)
+++.-||||-|---+.|||.|.+.++.+
T Consensus 5 elekkfkelwkgprrgeieelhkkfhel 32 (35)
T 1qp6_A 5 ELEKKFKELWKGPRRGEIEELHKKFHEL 32 (35)
T ss_dssp HHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 6777888888877789999988766543
No 302
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=32.33 E-value=9.5 Score=35.13 Aligned_cols=34 Identities=9% Similarity=-0.080 Sum_probs=0.0
Q ss_pred cccccCCCchhHHHHHHHHhH-HHHHHHHHHHHHHHHH
Q 016220 38 PWICESSSPQYYFLHLAFQHC-YCAIFLKIWSKNAITF 74 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~-~~~~l~~Eid~lrqEl 74 (393)
|..++||. .+|++++.++ |.--+++.++.|++|+
T Consensus 1 ~~~~~~q~---~~~~~~i~~~l~~~~~~~~~~~~~~e~ 35 (410)
T 1vyh_C 1 MVLSQRQR---DELNRAIADYLRSNGYEEAYSVFKKEA 35 (410)
T ss_dssp --------------------------------------
T ss_pred CCCCHHHH---HHHHHHHHHHHHhcChHHHHHHHHHHh
Confidence 44556643 3344433332 2222444445555554
No 303
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.22 E-value=50 Score=23.77 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016220 95 LQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLRaEla 117 (393)
++.||+-+..|-++|++|+..|+
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666666665
No 304
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=31.89 E-value=89 Score=29.09 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEK 85 (393)
+..|.++|+.++++|+++|.+|+-+.
T Consensus 270 ~~~~~~~l~~~~~~l~~l~~~l~~~d 295 (314)
T 3ggo_A 270 KENVMKAIEGFEKSLNHLKELIVREA 295 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34468999999999999999998654
No 305
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=31.86 E-value=1.1e+02 Score=27.80 Aligned_cols=19 Identities=11% Similarity=-0.078 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016220 98 MEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEl 116 (393)
..|++...++|+|+++..+
T Consensus 162 aK~~Y~~~c~e~e~a~~~~ 180 (312)
T 3abh_A 162 AKKAHHAACKEEKLAISRE 180 (312)
T ss_dssp HHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555433
No 306
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.41 E-value=1.9e+02 Score=22.62 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh----hh--hccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 44 SSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYE----YE--KKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~E----yE--KK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
..+|.++.++-+.. |-.+|+.|.+++..+-..+- |. ...-.+++.++..++..|-.+--.-|.|
T Consensus 13 ~~KLSykeqrEle~-----le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 13 SSKLSYKLQRELEQ-----LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp SCSCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677766665544 34444444444444444331 11 1123455666666666666555555544
No 307
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=31.02 E-value=48 Score=33.01 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=35.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc--chhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 51 LHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKF--YNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 51 ~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~--~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
.+.|++.|+- .|..+++.+|++|.++++.+|-+=.. .++.+ ..+.+++.+-.+..|+++|
T Consensus 150 ~~~a~~~l~g-~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~~~~-~~~~~~~~i~~l~~~l~~~ 211 (462)
T 3geh_A 150 AQTALAGLQG-KLAHPIRQLRANCLDILAEIEARIDFEEDLPPL-DDEAIISDIENIAAEISQL 211 (462)
T ss_dssp HHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHTTSSSSSCCC-CTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHhhccccccCChh-hHHHHHHHHHHHHHHHHHH
Confidence 4555665543 36788999999999999887765332 12211 1223344455555555554
No 308
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.85 E-value=79 Score=33.38 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhc
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK 86 (393)
.|+.|++.|+++++.+++..+.||.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (854)
T 1qvr_A 434 AIEAEIAKLTEEIAKLRAEWERERE 458 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888887765
No 309
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=30.65 E-value=1.5e+02 Score=24.54 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEK 100 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEK 100 (393)
|+.||+.-+.||+++..+++-=...+.++.+++..+++
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444444444444433333
No 310
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=30.31 E-value=21 Score=32.07 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.5
Q ss_pred CCcceeeeeeeeeeeeccchhhhHHhhhhhhccccccccC
Q 016220 4 VGAHKLEIRCTLIFTCTLDFLFRQVYSKALHFGHPWICES 43 (393)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~h~~h~l~~e~ 43 (393)
+.+|++-|.|+|.+-++ +.|+.-+.|.|-.+|
T Consensus 55 ~~d~kvvinc~I~~~l~--------Y~kasp~FHqW~d~~ 86 (168)
T 1i2h_A 55 LDGSKAIINSTITPNMT--------FTKTSQKFGQWADSR 86 (168)
T ss_dssp EETTEEEEEEECCTTCC--------EEEEETTEEEEEETT
T ss_pred ccCCEEEEecEecCCcE--------EeeCCcccceeecCC
Confidence 35788888888877664 567788889999988
No 311
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=30.18 E-value=1e+02 Score=23.64 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
|++.|+.++.=|..||.+- .++.+..+|.||--+-.|+++|+.
T Consensus 14 L~EQi~~I~~yI~qAk~~~---------R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 14 LLQQIDNIKAYIFDAKQCG---------RLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHHSS---------CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666777777676666543 456677888888888888887753
No 312
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=30.07 E-value=11 Score=36.45 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q 016220 108 EVEKLRAELM 117 (393)
Q Consensus 108 EvEKLRaEla 117 (393)
||.+|.++|.
T Consensus 49 ~~~~~~~~l~ 58 (385)
T 3p8q_A 49 ELTKSGTRLF 58 (385)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 313
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.98 E-value=61 Score=31.27 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRa 114 (393)
-|...++..|-..--|||.||+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 450 GEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3666777777777788888874
No 314
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=29.92 E-value=46 Score=26.05 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK 86 (393)
++.||+.|+-||||+-+.+==|-+
T Consensus 9 vl~ELeRlkveiQRLE~ml~p~~~ 32 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAMLMPEER 32 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHHhccccC
Confidence 678999999999999988764444
No 315
>1ei7_A Coat protein; disordered loops, viral protein; 2.45A {Tobacco mosaic virus} SCOP: a.24.5.1 PDB: 2om3_A 2tmv_P 2xea_A 3j06_A 1vtm_P
Probab=29.92 E-value=65 Score=29.00 Aligned_cols=36 Identities=8% Similarity=-0.123 Sum_probs=30.8
Q ss_pred cCCCchhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhh
Q 016220 42 ESSSPQYYFLHLAFQHCYCAI--FLKIWSKNAITFHLC 77 (393)
Q Consensus 42 e~~~~~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~ 77 (393)
+.+.+-+.|+..|+|-+-.+. ++.+|+.|..||.++
T Consensus 98 n~~nPttaE~lnAT~RvDDATvAir~~I~nL~~~L~~g 135 (158)
T 1ei7_A 98 NQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRG 135 (158)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCchHHHHhHhhhccchhHHHHHHHHHHHHHHhcc
Confidence 344678999999999887765 699999999999997
No 316
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.88 E-value=1.2e+02 Score=27.48 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhh----------hhccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCRGTYEY----------EKKFYNDHLESLQVMEKNYITMATEV---EKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey----------EKK~~~e~~Eq~q~MEKnlisMarEv---EKLRaElan 118 (393)
+..|||.++.=+.-+...+.. +.-+-.|++++.+.|...|..|+.|. |.+=+||.+
T Consensus 74 ~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~ 142 (186)
T 1oxz_A 74 RVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQ 142 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 345666666655555555543 44566689999999999999999876 455566553
No 317
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=29.82 E-value=98 Score=27.73 Aligned_cols=61 Identities=8% Similarity=-0.049 Sum_probs=29.5
Q ss_pred hHHhhhhhhccccccccCCCchhHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 016220 26 RQVYSKALHFGHPWICESSSPQYYFLHLAFQH----CYCAIFLKIWSKNAITFHLCRGTYEYEKK 86 (393)
Q Consensus 26 ~~~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~----~~~~~l~~Eid~lrqElqr~R~a~EyEKK 86 (393)
-+=|.+++..|=-.|.+--.+...+|..-.+| .|..+++++.+.+++++.+....+|.+|+
T Consensus 10 ~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~ 74 (233)
T 4efa_E 10 PNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQ 74 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333223455555544433 22333456666666666666666655543
No 318
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.73 E-value=1.1e+02 Score=23.89 Aligned_cols=20 Identities=0% Similarity=-0.039 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
++..|..|..||+++|..++
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665544
No 319
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=29.69 E-value=13 Score=31.87 Aligned_cols=44 Identities=11% Similarity=-0.115 Sum_probs=22.7
Q ss_pred hhccccccccC-CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 016220 33 LHFGHPWICES-SSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHL 76 (393)
Q Consensus 33 ~h~~h~l~~e~-~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr 76 (393)
.|+-|-+.|+. -..+..-|..||+-+++..|+++.+..++||.|
T Consensus 116 ~~~CHVF~~~~~A~~I~~tigqAF~~ay~~~l~~~~~~~~~~~~~ 160 (160)
T 2ej8_A 116 SSVCYIFESNNEGEKICDSVGLAKQIALHAELDRRASEKQKEIER 160 (160)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cEEEEEEEcchhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcC
Confidence 45668887874 334677888999999999999999999999864
No 320
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.64 E-value=3e+02 Score=24.51 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 016220 64 LKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~ 81 (393)
+.||-.||.|+.-+..-|
T Consensus 59 QKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 445555555544443333
No 321
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.62 E-value=38 Score=27.81 Aligned_cols=17 Identities=12% Similarity=-0.117 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 016220 63 FLKIWSKNAITFHLCRG 79 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~ 79 (393)
|+.||+.+++|+++++.
T Consensus 19 l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 19 LLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 45566666666666554
No 322
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.39 E-value=49 Score=30.67 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhcCC
Q 016220 104 TMATEVEKLRAELMNAP 120 (393)
Q Consensus 104 sMarEvEKLRaElanae 120 (393)
.+.+|.++||..|.-.+
T Consensus 47 ~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 47 DLKKENKDLKESLDITD 63 (255)
T ss_dssp HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 44567888887765543
No 323
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=29.38 E-value=31 Score=38.14 Aligned_cols=17 Identities=6% Similarity=-0.263 Sum_probs=12.6
Q ss_pred hhHHHHHHHHhHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAIF 63 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l 63 (393)
...+|+.+.++|.+++-
T Consensus 852 ~~~dL~~~W~~Le~ae~ 868 (1010)
T 1g8x_A 852 TPNEIDSTWSALEKAEQ 868 (1010)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45678888888887763
No 324
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=29.35 E-value=1.3e+02 Score=27.85 Aligned_cols=14 Identities=0% Similarity=-0.173 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHL 76 (393)
Q Consensus 63 l~~Eid~lrqElqr 76 (393)
.++|++.|.+|++|
T Consensus 17 ~~~~~~~~~~~~~~ 30 (323)
T 1ij5_A 17 VHENLEELQKKLDH 30 (323)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666664
No 325
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=29.31 E-value=2.6e+02 Score=23.68 Aligned_cols=32 Identities=6% Similarity=0.018 Sum_probs=24.3
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 85 KKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 85 KK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|+--.++.++.|.=|+.|..|-+.+.+++.++
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788999999999988887777766553
No 326
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.19 E-value=61 Score=26.44 Aligned_cols=22 Identities=0% Similarity=-0.091 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~ 81 (393)
...|+++++.|.+||+.+++.+
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4557778888888888777644
No 327
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=29.12 E-value=98 Score=25.19 Aligned_cols=24 Identities=4% Similarity=0.279 Sum_probs=19.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 016220 86 KFYNDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 86 K~~~e~~Eq~q~MEKnlisMarEv 109 (393)
..-.|++++.+.|...|+.|+.++
T Consensus 43 el~~eL~~~c~~~qp~i~~li~~~ 66 (103)
T 1wrd_A 43 ELLQELNRTCRAMQQRVLELIPQI 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 366788999999999999888643
No 328
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=29.03 E-value=1.3e+02 Score=24.76 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=21.8
Q ss_pred hhccccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016220 33 LHFGHPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAIT 73 (393)
Q Consensus 33 ~h~~h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqE 73 (393)
|...+.+++.+.. ..|+..+++ |..|...|+.+-++
T Consensus 26 L~~E~~~L~~~d~---~~L~~i~~~--k~~ll~~L~~~~~~ 61 (157)
T 2fup_A 26 VDEEFQALERREL---PVLQQLLGA--KQPLMQQLERNGRA 61 (157)
T ss_dssp HHHHHHHHHTTCC---HHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH---HHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3344557777753 277777777 66666655555554
No 329
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.81 E-value=1.2e+02 Score=23.64 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 93 ESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|..+.|+...-.|..|+|+||.|..
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666677778888888764
No 330
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=28.77 E-value=1.4e+02 Score=26.01 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 016220 102 YITMATEVEKLRAELM 117 (393)
Q Consensus 102 lisMarEvEKLRaEla 117 (393)
|..+..||++++.+|.
T Consensus 158 ~~kl~~~i~~~~~~l~ 173 (174)
T 3hho_A 158 IAKLKNEVERVEDQLL 173 (174)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3345566666665553
No 331
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.76 E-value=76 Score=23.41 Aligned_cols=21 Identities=0% Similarity=-0.107 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 016220 61 AIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~ 81 (393)
..|+.|++.||+++..+...+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544433
No 332
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=28.69 E-value=1.8e+02 Score=30.77 Aligned_cols=46 Identities=9% Similarity=-0.043 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhh-hccchhhHHH
Q 016220 49 YFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYE-KKFYNDHLES 94 (393)
Q Consensus 49 ~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyE-KK~~~e~~Eq 94 (393)
-+|+..+.++++.. ++++++.|++|+++.+.+.+.= .+...++++|
T Consensus 469 ~~l~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e 520 (737)
T 2v5d_A 469 PELRAKMDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEVALEE 520 (737)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 34555555554444 3678999999999999887642 2222266666
No 333
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.69 E-value=1.2e+02 Score=29.94 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh---hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 60 CAIFLKIWSKNAITFHLCRGTY---EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~---EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
...|++|...+.+||..+...= +--|+.-.++-++++.+|+.+-.+..|++.|-..|=|.-
T Consensus 46 ~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 46 LEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp HHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4458999999999998764432 222334445678889999999988888888777776643
No 334
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.59 E-value=89 Score=25.22 Aligned_cols=41 Identities=10% Similarity=-0.091 Sum_probs=23.2
Q ss_pred ccccCCCchhHHHHHHHHhHHHHH------HHHHHHHHHHHHHhhhhhh
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAI------FLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~------l~~Eid~lrqElqr~R~a~ 81 (393)
||.|++ +-.+.+.|..=+|+.. |-.|.+.|+.||..++.+.
T Consensus 14 Li~EN~--eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 14 LILENT--QLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 777874 3444555554444433 4556666666666665544
No 335
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.50 E-value=58 Score=24.04 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=18.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 016220 47 QYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRG 79 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~ 79 (393)
.-.||..+.+++ ..|..|++.|++|+.++..
T Consensus 25 VD~FLd~v~~~~--~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 25 VNEFLAQVRKDY--EIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 445566666663 3467778888888777643
No 336
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.49 E-value=1.4e+02 Score=23.85 Aligned_cols=65 Identities=5% Similarity=-0.053 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccch---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 47 QYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYN---DHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~---e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+..+|+..+.++++.+ ++.-|+.|.++..+. +-...... -..-|..++-++|+.+-.|-.+...+
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~----~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~ 117 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSIEQE----EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD 117 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777665 677788877776542 11111111 12345567777777777766655444
No 337
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.33 E-value=2.4e+02 Score=24.11 Aligned_cols=70 Identities=4% Similarity=-0.005 Sum_probs=41.4
Q ss_pred hhHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhhhccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 47 QYYFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYEKKFYND---HLESLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyEKK~~~e---~~Eq~q~MEKnlisMarEvEKLRaElanae 120 (393)
+..+|+.-++++++.+ ++..|+.|.+++..... ......+ .--|..++-+.|..+-.+-.+++.+..+.-
T Consensus 79 ~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~----~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~ 153 (180)
T 1s94_A 79 MKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH----SNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRC 153 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555 56666666665543310 0111111 124667888889999999988888766543
No 338
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=28.28 E-value=1.6e+02 Score=25.64 Aligned_cols=69 Identities=3% Similarity=-0.095 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHHhhhhhhhhh-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 49 YFLHLAFQHCYCAI--FLKIWSKNAITFHLCRGTYEYE-KKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 49 ~~~~~~~~~~~~~~--l~~Eid~lrqElqr~R~a~EyE-KK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..|..+..+|.+.+ |..|-..+.++|..+...=+.+ .|-.+.++=+.+-+.++|..+.--|+-+...|.
T Consensus 17 ~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lq 88 (179)
T 2gd5_A 17 LKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMK 88 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444 2333333444443333211110 122333444444445555555555555444443
No 339
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=28.12 E-value=2.2e+02 Score=24.21 Aligned_cols=22 Identities=14% Similarity=-0.165 Sum_probs=12.2
Q ss_pred cccccCCCchhHHHHHHHHhHHH
Q 016220 38 PWICESSSPQYYFLHLAFQHCYC 60 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~ 60 (393)
.|+.|+. .|..+++...++|.+
T Consensus 26 ~l~~eN~-~Lk~e~e~l~~~~~~ 47 (155)
T 2oto_A 26 RLRHENK-DLKARLENAMEVAGR 47 (155)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 4556664 466666655544443
No 340
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=27.91 E-value=1.3e+02 Score=34.17 Aligned_cols=47 Identities=6% Similarity=-0.019 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+.|+|.|++|+..+...|+.=++...+. -+.+.|..+-.|+||+..+
T Consensus 1126 ~ee~ekL~~E~~e~~~ei~~L~~~s~~~-----lw~~DLd~~~~~~~~~~~~ 1172 (1177)
T 4gfh_A 1126 KERYQKLLKQKQEKETELENLLKLSAKD-----IWNTDLKAFEVGYQEFLQR 1172 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 5677777777776666665444433321 2344455555555555443
No 341
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=27.81 E-value=2e+02 Score=24.98 Aligned_cols=12 Identities=33% Similarity=0.265 Sum_probs=7.0
Q ss_pred hhhhHHhhhhhh
Q 016220 23 FLFRQVYSKALH 34 (393)
Q Consensus 23 ~~~~~~~~k~~h 34 (393)
-..|..+-..||
T Consensus 67 p~~R~~Yd~~l~ 78 (174)
T 3hho_A 67 PLRRAEYLLSLQ 78 (174)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHcc
Confidence 355666665665
No 342
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=27.77 E-value=72 Score=25.97 Aligned_cols=49 Identities=18% Similarity=0.012 Sum_probs=27.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 48 YYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
-.++++|+|||.|+..++.- | ...-.-.+|+-||-+.+ |--+||=++||
T Consensus 28 gkeleralqelekalaraga----------r---nvqitisaendeqakel---leliarllqkl 76 (96)
T 2jvf_A 28 GKELERALQELEKALARAGA----------R---NVQITISAENDEQAKEL---LELIARLLQKL 76 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------S---EEEEEEECSSHHHHHHH---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccc----------c---ceEEEEEecChHHHHHH---HHHHHHHHHHh
Confidence 35788899998877654421 1 11122345666665543 33456666666
No 343
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.68 E-value=70 Score=26.59 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=15.0
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 77 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 77 ~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
-+.-|+-|+..+-.+-+..+.++.-|-.+-+++.+|.+
T Consensus 52 Y~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 52 YKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 344
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=27.63 E-value=70 Score=34.89 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++..|.++.+.|||+|+.+-+ ||+++... -+....+|.-+..|-+.+..||..|.++
T Consensus 248 ~Re~Iv~~C~~vrq~L~dLl~--~~~~~~g~--~~~s~~l~~ai~~l~~k~~dL~r~L~~A 304 (832)
T 4igg_A 248 RRERIVAECNAVRQALQDLLS--EYMGNAGR--KERSDALNSAIDKMTKKTRDLRRQLRKA 304 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHTCSSC--SCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhhcccc--ccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578889999999998887 55554221 1233455566777888888888887654
No 345
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.60 E-value=65 Score=26.78 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 91 HLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 91 ~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+.++++.-|+-|.+|-.+|.+|+.+++
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~ 33 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAE 33 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 346
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=27.54 E-value=2.1e+02 Score=26.26 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016220 97 VMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 97 ~MEKnlisMarEvEKLRaEla 117 (393)
..+.+|-..-.+++.|+.++.
T Consensus 140 ~a~a~l~~a~~~l~~~~~~~~ 160 (359)
T 3lnn_A 140 QAASESQRADARLAQLGAKGG 160 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhcCCcc
Confidence 334444445555666666655
No 347
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.41 E-value=69 Score=22.32 Aligned_cols=24 Identities=4% Similarity=-0.170 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a 80 (393)
|-|+..|..|-+.|+.|..|+|.-
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345666777777788888777764
No 348
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.39 E-value=1.9e+02 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
++-++++..++-|....+|.|+|...|.+
T Consensus 96 ~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 96 MLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777777777776643
No 349
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=27.37 E-value=1.9e+02 Score=26.11 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=34.6
Q ss_pred cccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccch----hhHHHHHHHHHHHHHHHHH
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYN----DHLESLQVMEKNYITMATE 108 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~----e~~Eq~q~MEKnlisMarE 108 (393)
+|+.||-.+|.-.++..+.+.| ++++........+|..+- -+|...- ...+++|.|=+.+|.-.-|
T Consensus 105 ~lTeErRkelvK~~k~~~E~aK-vaiRniRrda~~~lKk~~----K~~~iseD~~k~~e~~iQkltd~~i~~id~ 174 (185)
T 1eh1_A 105 PLTEERRKDLVRAVRQYAEEGR-VAIRNIRREALDKLKKLA----KELHLSEDETKRAEAEIQKITDEFIAKADQ 174 (185)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh----hcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899997666666666666655 345555444445555431 1111111 2345566666665554433
No 350
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.29 E-value=1.7e+02 Score=25.60 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
++-++++..|+-|....+|.|+|..+|.+
T Consensus 96 ~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 96 MLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666777777777777777777654
No 351
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=27.26 E-value=1.8e+02 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=22.0
Q ss_pred ccccCCCchhHHHHHHHHhHHHH----HHHHHHHHHHHHHHhhh
Q 016220 39 WICESSSPQYYFLHLAFQHCYCA----IFLKIWSKNAITFHLCR 78 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~----~l~~Eid~lrqElqr~R 78 (393)
.|+|. +.+..++.|.+.|+.- .|..|...++++++...
T Consensus 18 ~I~~s--eEy~~~k~A~~~l~~D~ea~~li~~F~~~q~~~q~~q 59 (122)
T 2oeq_A 18 AIRAS--EPFQQLKRAYEDVRRDETAYRMFANVRDIQLRLHEKQ 59 (122)
T ss_dssp HHHHS--HHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 3455555554444321 25777778888887765
No 352
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.14 E-value=35 Score=29.02 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=6.9
Q ss_pred hhHHHHHHHHhHHHHH
Q 016220 47 QYYFLHLAFQHCYCAI 62 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~~ 62 (393)
|..+|+....|.++.+
T Consensus 27 lk~ele~l~~E~q~~v 42 (120)
T 3i00_A 27 LKAQLENMKTESQRVV 42 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 353
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.06 E-value=47 Score=27.54 Aligned_cols=20 Identities=5% Similarity=-0.084 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
|.+|||.+..+|.-.|+.|+
T Consensus 61 l~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 61 LDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666665
No 354
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.04 E-value=2.7e+02 Score=23.43 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=33.2
Q ss_pred ccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 39 WICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 39 l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
|=-|++. |.|+|. .||-.|+.+.+.+..++..++- | .-....+.+.+..+-.++.+||.+|.-
T Consensus 21 LDNEKsa-l~YqVd---------lLKD~LEe~eE~~aql~Re~~e-K------~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 21 LDNEKTN-FMYQVD---------TLKDMLLELEEQLAESRRQYEE-K------NKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHH-HHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456653 666553 3444455544444444433221 1 112233344556677788888888865
Q ss_pred CC
Q 016220 119 AP 120 (393)
Q Consensus 119 ae 120 (393)
.+
T Consensus 84 RD 85 (103)
T 4h22_A 84 RE 85 (103)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 355
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.91 E-value=1e+02 Score=30.11 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
+|+.|+.+|.++....+ .....+.+|..+.+.+.+..+-.|+|+|.
T Consensus 395 ~i~~l~~~i~~l~~~~~--~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 440 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKD--AAVQSQEFEKAASLRDTEQRLREQVEDTK 440 (468)
T ss_dssp STHHHHHHHHHHHHHHH--HHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544433222 11223334444444444434444444443
No 356
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=26.89 E-value=64 Score=29.38 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhh-----------------hhhhhhhccch--hhHHHHHHHHH-----HHHHHHHHHHHHHHHHhc
Q 016220 63 FLKIWSKNAITFHLCR-----------------GTYEYEKKFYN--DHLESLQVMEK-----NYITMATEVEKLRAELMN 118 (393)
Q Consensus 63 l~~Eid~lrqElqr~R-----------------~a~EyEKK~~~--e~~Eq~q~MEK-----nlisMarEvEKLRaElan 118 (393)
+..|+..|=+|+.... .++||||++|. ++-|=-...++ -+-.++.||++.|.++.+
T Consensus 117 ~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~ff~~~~~~~~~~~~~~~~~~l~~~r~~~~~ 196 (204)
T 4dmb_A 117 LRKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIA 196 (204)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 4666666666654322 37899999987 33332223322 356789999999998865
Q ss_pred C
Q 016220 119 A 119 (393)
Q Consensus 119 a 119 (393)
+
T Consensus 197 ~ 197 (204)
T 4dmb_A 197 A 197 (204)
T ss_dssp H
T ss_pred h
Confidence 4
No 357
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=26.79 E-value=1.2e+02 Score=18.99 Aligned_cols=20 Identities=5% Similarity=0.225 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016220 93 ESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 93 Eq~q~MEKnlisMarEvEKL 112 (393)
.....|-+.+-.|+.+++++
T Consensus 35 dEi~~l~~~~n~m~~~l~~~ 54 (56)
T 2asw_A 35 DEIGILAKSIERLRRSLKVA 54 (56)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777654
No 358
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.74 E-value=1.7e+02 Score=24.79 Aligned_cols=54 Identities=15% Similarity=0.029 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhhhh--------hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTY--------EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~--------EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|+.||+.||++...+..-| |+|...++ ....+..||.+|-...-..-=|..||.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~-t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA-TIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665555554443332 33443333 233455566665544444444555553
No 359
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.57 E-value=94 Score=24.15 Aligned_cols=33 Identities=6% Similarity=-0.200 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHH----------------------HHHHHHHHHHHHHhhhhhhh
Q 016220 50 FLHLAFQHCYCAI----------------------FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 50 ~~~~~~~~~~~~~----------------------l~~Eid~lrqElqr~R~a~E 82 (393)
.|...|.+|+..+ |+.+++.|++|+..++..++
T Consensus 20 ~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 20 SINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 360
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=26.54 E-value=60 Score=21.46 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016220 98 MEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 98 MEKnlisMarEvEKLRaElan 118 (393)
+.-|.-.+-+||-||..|++.
T Consensus 6 ldanvkrlekevgklegevar 26 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHhhhhhhhhh
Confidence 556777788899999999874
No 361
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=26.53 E-value=92 Score=25.24 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=33.3
Q ss_pred HHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 50 FLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 50 ~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
+|+.--+||||.. .+-+|.+|-.+| .-++|++-.+=+.....-+|++.+|++|+.+++
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdL--------------P~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGL--------------PTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHT--------------TTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555554 355666666553 223344444555566677888889998886654
No 362
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=26.49 E-value=3.4e+02 Score=24.96 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLE---SLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~E---q~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
+++.++.+++-+...+.-++.-.....|.+. ++...+.+++..-.+++..+.+|...-.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~a~~~l~~a~~~~~~a~~~L~~l~G 225 (442)
T 1yc9_A 164 VHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALVG 225 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666677777777777766666666654 3455677888888888888888876543
No 363
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.34 E-value=1.8e+02 Score=24.50 Aligned_cols=15 Identities=7% Similarity=-0.210 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHh
Q 016220 62 IFLKIWSKNAITFHL 76 (393)
Q Consensus 62 ~l~~Eid~lrqElqr 76 (393)
.|++||..|+..++.
T Consensus 22 ~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 22 SLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445444444433
No 364
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.29 E-value=98 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 95 LQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLRaElana 119 (393)
.+.+||-|..--.||.+||.||-+.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666777777777654
No 365
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.07 E-value=1.8e+02 Score=29.76 Aligned_cols=24 Identities=4% Similarity=-0.009 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 90 DHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
++-++++++|+.+..+-.|++.|-
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554444444333
No 366
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=25.98 E-value=74 Score=27.32 Aligned_cols=11 Identities=18% Similarity=-0.079 Sum_probs=6.3
Q ss_pred CchhHHHHHHH
Q 016220 45 SPQYYFLHLAF 55 (393)
Q Consensus 45 ~~~~~~~~~~~ 55 (393)
.+|.+|+++--
T Consensus 35 DPL~~ELeRLr 45 (115)
T 3vem_A 35 DPFLHELEKLR 45 (115)
T ss_dssp SHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 46666666543
No 367
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=25.96 E-value=70 Score=33.27 Aligned_cols=48 Identities=4% Similarity=0.021 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+.|++.|++|+..+...|++=++. |+..+.+ +--+..|++.|+.+..+
T Consensus 453 ~~e~~kl~~E~~~l~~ei~~l~~i----L~~~~~~---~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 453 NTDIVALEGEHKELEALIKQLRHI----LDNHDAL---LNVIKEELNEIKKKFKS 500 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH----HHCHHHH---HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHH---HHHHHHHHHHHHHHcCC
Confidence 557777777776665555432211 1111111 12245677878777765
No 368
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=25.93 E-value=95 Score=26.76 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhh--------hhhhhhccchhhHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 016220 64 LKIWSKNAITFHLCRG--------TYEYEKKFYNDHLESL--QVMEKNYITMATEVEKLRAELMNAPNVD 123 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~--------a~EyEKK~~~e~~Eq~--q~MEKnlisMarEvEKLRaElanae~~~ 123 (393)
++-++.|++||++++. ++ -|-...-++.|.. ++-.+.+--+-+-|..|..+|.++...+
T Consensus 8 ~~g~~~L~~El~~L~~~~rp~i~~~i-~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~vid 76 (158)
T 1grj_A 8 LRGAEKLREELDFLKSVRRPEIIAAI-AEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVID 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_pred HHHHHHHHHHHHHHHhccchhhHhhH-HHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCeecC
No 369
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=25.90 E-value=27 Score=27.84 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEK 85 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEK 85 (393)
.+.|...++-|+.||.|+-..-|-||
T Consensus 45 narL~eq~~lLK~EIRRlERnqeRe~ 70 (71)
T 3bbp_D 45 NAILMEQIKLLKSEIRRLERNQEREK 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 36678888888888888766666554
No 370
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=25.90 E-value=68 Score=28.98 Aligned_cols=14 Identities=0% Similarity=-0.192 Sum_probs=8.6
Q ss_pred hHHHHHHHHhHHHH
Q 016220 48 YYFLHLAFQHCYCA 61 (393)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (393)
..+|++..+|..+.
T Consensus 121 ~eeI~~m~~~a~~~ 134 (219)
T 4e81_A 121 EDEIQKMVRDAEAN 134 (219)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 45677777765443
No 371
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.88 E-value=1.5e+02 Score=27.20 Aligned_cols=41 Identities=2% Similarity=-0.087 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYI 103 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnli 103 (393)
|++++..|.+|.+++...++-=++-.-+.+.....||..|+
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~ 177 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLY 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666655555555444444444444455555443
No 372
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=25.80 E-value=75 Score=32.88 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+.|++.|++|+..+...|++=++.-.+.-.. +--+..|++.|+.+..+
T Consensus 429 ~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~-------~~~i~~el~~i~~~y~~ 476 (496)
T 2nov_A 429 NTDVVVLQEEEAELREKIAMLAAIIGDERTM-------YNLMKKELREVKKKFAT 476 (496)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCTTHH-------HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-------HHHHHHHHHHHHHHhCC
Confidence 5677777777776665554322211111011 12245677777777765
No 373
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.68 E-value=3.3e+02 Score=23.69 Aligned_cols=45 Identities=4% Similarity=-0.178 Sum_probs=27.1
Q ss_pred hhHHHHHHHHhHHHH--HHHHHHHHHHHHHHhhhhhhhhhhccchhh
Q 016220 47 QYYFLHLAFQHCYCA--IFLKIWSKNAITFHLCRGTYEYEKKFYNDH 91 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~--~l~~Eid~lrqElqr~R~a~EyEKK~~~e~ 91 (393)
+..+|+.|..-|-.. .|.+||+.-++=++-++.++.+.|....+.
T Consensus 73 l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~ 119 (152)
T 4fla_A 73 LSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEK 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443322 278888887777777777777766554433
No 374
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=25.66 E-value=1.9e+02 Score=28.81 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 016220 100 KNYITMATEVEKLRAE 115 (393)
Q Consensus 100 KnlisMarEvEKLRaE 115 (393)
..|-.+..+|++|..|
T Consensus 76 ~e~~~l~~~~~~le~~ 91 (354)
T 3d5a_X 76 AEREALLARKEALEKE 91 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555443
No 375
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=25.63 E-value=1.5e+02 Score=28.42 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcc-c-------hhhHHH-HHHHHHHHHHHHHHHHHHHH
Q 016220 61 AIFLKIWSKNAITFHLCRGTYEYEKKF-Y-------NDHLES-LQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~EyEKK~-~-------~e~~Eq-~q~MEKnlisMarEvEKLRa 114 (393)
..|+-||..|+.++-|++.-..+.+.. . ...+|. .+.+.+.+..+.+|+++++.
T Consensus 103 ~~~q~~la~l~~~~~rl~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~ 165 (364)
T 2qtf_A 103 AKMQIELARLKYELPIIKETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKI 165 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhhhchhhhhhhHHHHhcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888877765444433322 1 111121 33445555566666666543
No 376
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=25.61 E-value=2.1e+02 Score=24.95 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 016220 103 ITMATEVEKL 112 (393)
Q Consensus 103 isMarEvEKL 112 (393)
+.|+.++|..
T Consensus 84 l~i~~dlERI 93 (235)
T 1sum_B 84 IRVAELIENI 93 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 377
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=25.58 E-value=3.3e+02 Score=25.60 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLE---SLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~E---q~q~MEKnlisMarEvEKLRaElana 119 (393)
+++.++.+++-+...+..|+.-.....|.++ ++...|.+++..-.+++..+.+|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~G~~~~~dvl~a~~~~~~a~~~l~~a~~~~~~a~~~L~~l 237 (474)
T 3d5k_A 178 TKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLL 237 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666555555555554 34556778888888888888888764
No 378
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=25.50 E-value=2.5e+02 Score=24.32 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016220 92 LESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarEvEKLRa 114 (393)
.+++-.|.-+|.++..-|+-+.+
T Consensus 70 ~~~l~~~~a~l~~v~~~lqt~~~ 92 (179)
T 2gd5_A 70 VSKLYASKAHMNSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544
No 379
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=25.48 E-value=2.3e+02 Score=24.06 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
++.++...+|+.+..|-+||++.=.
T Consensus 40 ~~a~~v~~~d~~iD~l~~~I~~~~~ 64 (216)
T 2i0m_A 40 EMAELIINKDHAINQGQSAIELTCA 64 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 380
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.45 E-value=1e+02 Score=26.38 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccc--hhhHHHHHHHHHHHHHHHHHH
Q 016220 59 YCAIFLKIWSKNAITFHLCRGTYEYEKKFY--NDHLESLQVMEKNYITMATEV 109 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElqr~R~a~EyEKK~~--~e~~Eq~q~MEKnlisMarEv 109 (393)
-..-|.++|++|+.||-.+|-. +.+. .|+..+++.+-+++--|-..+
T Consensus 13 s~eEL~~~L~eLK~ELf~LRfq----~atgq~len~~rir~vRrdIARI~Tvl 61 (123)
T 2zkr_v 13 KKEELLKQLDDLKVELSQLRVA----KVTGGAASKLSKIRVVRKSIARVLTVI 61 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH----HHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH----HHhCCcccccHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999954 4333 688999999999976665443
No 381
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=25.42 E-value=98 Score=29.07 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=6.4
Q ss_pred eeeeeeccchhhhHHh
Q 016220 14 TLIFTCTLDFLFRQVY 29 (393)
Q Consensus 14 ~~~~~~~~d~~~~~~~ 29 (393)
||.|+++---.+-++.
T Consensus 122 ~lsf~a~t~~~A~~lL 137 (280)
T 3b8m_A 122 TLSFTAPTSEEAQTVL 137 (280)
T ss_dssp EEEEEESSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHH
Confidence 4444444333333333
No 382
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=25.34 E-value=39 Score=23.53 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=8.7
Q ss_pred hhhhhccchhhHHHHHHHH
Q 016220 81 YEYEKKFYNDHLESLQVME 99 (393)
Q Consensus 81 ~EyEKK~~~e~~Eq~q~ME 99 (393)
||-=|+-|+-+-||.+.+|
T Consensus 16 IddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 16 IDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3333444555555555544
No 383
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.20 E-value=46 Score=34.18 Aligned_cols=58 Identities=3% Similarity=-0.211 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh---hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 61 AIFLKIWSKNAITFHLCRGTY---EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~---EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..|++|+..+.+||-.+...= +--+..-.++-++++.+|+.+..+..|++.|-..|=|
T Consensus 50 ~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 50 DEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 447888888888876554322 2222333456678888888887777777665555544
No 384
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.06 E-value=76 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElanae 120 (393)
..+.+.|-.+.+|++.|+.+|...+
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677778888888877654
No 385
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=24.99 E-value=1e+02 Score=25.03 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHH
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEK 100 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEK 100 (393)
.|...|+..++++..++..+|.-++.-.+..-..++|||
T Consensus 78 ~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 78 TLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777777666666666666666653
No 386
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=24.94 E-value=90 Score=24.75 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 67 WSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 67 id~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElana 119 (393)
++.|+..|+.++.-.+-=|..++. .-+..||.||..||.+.
T Consensus 5 ~eeL~~DLeEl~~Ll~~AkR~rVk------------~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKSTRKRLR------------DTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHH------------HHHHHHHHHHHHHHHHH
Confidence 555666555555555544444443 23566777777777754
No 387
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=24.85 E-value=3.8 Score=34.30 Aligned_cols=12 Identities=0% Similarity=-0.139 Sum_probs=1.9
Q ss_pred HHHHHHHHHHhh
Q 016220 66 IWSKNAITFHLC 77 (393)
Q Consensus 66 Eid~lrqElqr~ 77 (393)
|||.|...|+-+
T Consensus 18 ei~~L~~~L~~A 29 (96)
T 3fx0_A 18 QLEDLKQQLQQA 29 (96)
T ss_dssp --------CCSS
T ss_pred HHHHHHHHHHHH
Confidence 566665555444
No 388
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.81 E-value=2.2e+02 Score=24.14 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHH
Q 016220 90 DHLESLQVMEKNY 102 (393)
Q Consensus 90 e~~Eq~q~MEKnl 102 (393)
|+-+-..++|+|-
T Consensus 85 DLe~sI~ivE~np 97 (130)
T 4dnd_A 85 DLEETIGIVEANP 97 (130)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCH
Confidence 3334444445443
No 389
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.74 E-value=60 Score=21.31 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 016220 63 FLKIWSKNAITFHLCRG 79 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~ 79 (393)
|-.|||+|++-|..+|.
T Consensus 6 lykeledlqerlrklrk 22 (27)
T 3twe_A 6 LYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577788777777664
No 390
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.71 E-value=68 Score=24.65 Aligned_cols=29 Identities=3% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHH-----------------------HHHHHHHHHHHHHhhh
Q 016220 50 FLHLAFQHCYCAI-----------------------FLKIWSKNAITFHLCR 78 (393)
Q Consensus 50 ~~~~~~~~~~~~~-----------------------l~~Eid~lrqElqr~R 78 (393)
.|..+|.+|+.++ |+.+++.|++|+.++|
T Consensus 26 ~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 26 HIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 391
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.54 E-value=84 Score=32.37 Aligned_cols=48 Identities=4% Similarity=-0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+.|++.|++|+..+...|++=++. |+..+.+ +--+..|++.++.+..+
T Consensus 415 ~le~~kl~~E~~~l~~~i~~l~~i----L~~~~~~---~~~i~~el~~i~~~yg~ 462 (470)
T 3ilw_A 415 ALERQRIIDDLAKIEAEIADLEDI----LAKPERQ---RGIVRDELAEIVDRHGD 462 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHH---HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHH---HHHHHHHHHHHHHHhCC
Confidence 778888888887777666543222 2221111 12245677777777764
No 392
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=24.52 E-value=2.2e+02 Score=21.29 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=30.3
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHH-hhhhhhhhh----hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 49 YFLHLAFQHCYCAI--FLKIWSKNAITFH-LCRGTYEYE----KKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 49 ~~~~~~~~~~~~~~--l~~Eid~lrqElq-r~R~a~EyE----KK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
..|..+.++|...+ |+.+|+.|...-+ .+..+|.-. ++.-.+..+-++.+.+.|...|..++..-.+++
T Consensus 18 ~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A 93 (98)
T 3gwk_C 18 QKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIA 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544433 5666666654332 112222211 111122333444555555555555555555554
No 393
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.41 E-value=2.7e+02 Score=22.23 Aligned_cols=72 Identities=11% Similarity=-0.059 Sum_probs=32.9
Q ss_pred ccccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 37 HPWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 37 h~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
|-|-+|+. .+.-+|+.+- .+-..|+..|..|++.|.+.|..=+--|..---.+|+ |..=..|+-.||-.|
T Consensus 2 ~~l~~e~e-~~~~klq~~E--~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~-------Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 2 SHMAAERE-ETQQKVQDLE--TRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL-------LDVSLFELSELREGL 71 (79)
T ss_dssp ---------CTTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred chHHHHHH-HHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHH
Confidence 44556664 3555555442 2244477777788887777765443332221122222 233345666666666
Q ss_pred hc
Q 016220 117 MN 118 (393)
Q Consensus 117 an 118 (393)
++
T Consensus 72 ak 73 (79)
T 3cvf_A 72 AR 73 (79)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 394
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=24.23 E-value=81 Score=25.95 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHH
Q 016220 94 SLQVMEKNYITMATE-------VEKLRAEL 116 (393)
Q Consensus 94 q~q~MEKnlisMarE-------vEKLRaEl 116 (393)
-+|.+--|++++..| -||||||-
T Consensus 27 ~lqqlr~~y~s~~se~~dlt~s~ekl~ae~ 56 (97)
T 1no4_A 27 ALQQLRVNYGSFVSEYNDLTKSHEKLAAEK 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhcc
Confidence 334444577766666 48888884
No 395
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=24.20 E-value=1.8e+02 Score=26.04 Aligned_cols=15 Identities=0% Similarity=-0.219 Sum_probs=6.8
Q ss_pred hhHHHHHHHHhHHHH
Q 016220 47 QYYFLHLAFQHCYCA 61 (393)
Q Consensus 47 ~~~~~~~~~~~~~~~ 61 (393)
++.+|...++++++.
T Consensus 178 ~~~~i~~v~~~i~~~ 192 (309)
T 2ch7_A 178 ASENVRRVVNEIRSI 192 (309)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 396
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=24.12 E-value=2.3e+02 Score=24.98 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=5.1
Q ss_pred HHHHHhhhhhhh
Q 016220 71 AITFHLCRGTYE 82 (393)
Q Consensus 71 rqElqr~R~a~E 82 (393)
.+|++.++..||
T Consensus 185 e~el~~ak~~ye 196 (251)
T 2fic_A 185 EEELIKAQKVFE 196 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 397
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.64 E-value=70 Score=23.52 Aligned_cols=24 Identities=8% Similarity=-0.009 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 016220 58 CYCAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 58 ~~~~~l~~Eid~lrqElqr~R~a~ 81 (393)
.++..|..|...|++|+..++..|
T Consensus 29 ~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 29 NRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666544
No 398
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=23.61 E-value=1.3e+02 Score=28.68 Aligned_cols=20 Identities=10% Similarity=-0.258 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
++.|++.|.+.+..++..++
T Consensus 90 ~~~e~~~l~~sf~~m~~~~~ 109 (419)
T 1y8o_A 90 VGLVQSWYMQSFLELLEYEN 109 (419)
T ss_dssp HHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 56778888777777776654
No 399
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.49 E-value=91 Score=23.09 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 85 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 85 KK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+.....+.++-..|..-|-.--.||++|++||..
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 400
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=23.45 E-value=76 Score=25.91 Aligned_cols=34 Identities=9% Similarity=-0.105 Sum_probs=17.8
Q ss_pred cccccCCCchhHHHHHHHHh-HHHHHHHHHHHHHHHHH
Q 016220 38 PWICESSSPQYYFLHLAFQH-CYCAIFLKIWSKNAITF 74 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~-~~~~~l~~Eid~lrqEl 74 (393)
|++++|| ..+||.|+=+ |....+..=.+.+|+|+
T Consensus 3 miLt~rQ---~eEL~kaI~~YL~~~~~~~~~~alr~e~ 37 (88)
T 1uuj_A 3 MVLSQRQ---RDELNRAIADYLRSNGYEEAYSVFKKEA 37 (88)
T ss_dssp -CCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCHHH---HHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 5667774 4566665433 22222344567777775
No 401
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.40 E-value=2.8e+02 Score=22.99 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=19.1
Q ss_pred HHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 74 FHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 74 lqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
|.-+..-+|-|...+.++....+-||.++-.+-..|+-|
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555544444444443
No 402
>3rx6_A Polarity suppression protein; all alpha protein, transcription termination inhibitor, RHO capsid decoration protein of bacteriophage P4; 2.04A {Enterobacteria phage P4} PDB: 4dvd_A
Probab=23.36 E-value=2.1e+02 Score=26.48 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016220 49 YFLHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 112 (393)
Q Consensus 49 ~~~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL 112 (393)
..++.||..|++.. .|.|+....|||+.+ .-.-||.. .|+|.+-..|.-.-+||-.+
T Consensus 4 ~~~qqA~~~~~~~k~~W~~~~~~~~~aeq~~~~l--l~~~~~~~-----~~l~~lRe~idvl~Wein~a 65 (190)
T 3rx6_A 4 TALQQAFDTCQNNKAAWLQRKNELAAAEQEYLRL--LSGEGRNV-----SRLDELRNIIEVRKWQVNQA 65 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSCCCH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HhcCCCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 45677888887766 488999999998884 22334444 66666666666555555443
No 403
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=23.35 E-value=3e+02 Score=22.58 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhh-hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 66 IWSKNAITFHLCRGTYE-YEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 66 Eid~lrqElqr~R~a~E-yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
=|.+|++|||.++..-. -|-.-+..+|+| --.+|.++-+.+-.|..|
T Consensus 37 ~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~q---AraDL~~l~r~~av~g~E 84 (90)
T 4b6x_A 37 MVNNLTDELQDAIDEANPAEIANTSQQLRH---ARADLADLQRRFAVLRNE 84 (90)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHhHHHHHHH---HHHHHHHHHHHHHHHhhh
Confidence 36778888887764211 111111122222 234566666666655554
No 404
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=23.34 E-value=1.9e+02 Score=27.27 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhhhh
Q 016220 65 KIWSKNAITFHLCRGT 80 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a 80 (393)
+|...+|.||.+....
T Consensus 131 ~~~k~~r~elkk~~~~ 146 (253)
T 2d1l_A 131 KEYKKARQEIKKKSSD 146 (253)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 4555556665444433
No 405
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.33 E-value=1.4e+02 Score=30.78 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 90 DHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 90 e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
.+-.++++|..-|..+.+.|+||+..|..
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777888888888888763
No 406
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.32 E-value=2e+02 Score=30.04 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 016220 338 APSYDPS 344 (393)
Q Consensus 338 sPsY~~~ 344 (393)
.|+|+++
T Consensus 477 ~p~y~~~ 483 (497)
T 3iox_A 477 APNYEKE 483 (497)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 3444443
No 407
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=23.32 E-value=47 Score=26.08 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 016220 101 NYITMATEVEKLRAELMN 118 (393)
Q Consensus 101 nlisMarEvEKLRaElan 118 (393)
|+..|-+|||.||.||.-
T Consensus 18 ~~~~lr~~veqLr~el~~ 35 (73)
T 1got_G 18 EKDKLKMEVDQLKKEVTL 35 (73)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHCC
Confidence 556788999999999963
No 408
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=23.30 E-value=1.3e+02 Score=31.75 Aligned_cols=27 Identities=4% Similarity=-0.155 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHH-HHHHHHHHHHHHH
Q 016220 49 YFLHLAFQHCYCAI-FLKIWSKNAITFH 75 (393)
Q Consensus 49 ~~~~~~~~~~~~~~-l~~Eid~lrqElq 75 (393)
..++..-+++|++. +++|.|--.||++
T Consensus 16 ~~~q~~e~~~k~Le~~Qe~f~~~y~~~~ 43 (575)
T 1bf5_A 16 DKVMCIEHEIKSLEDLQDEYDFKCKTLQ 43 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444444555444 4555555556665
No 409
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.22 E-value=1.2e+02 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 95 LQVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 95 ~q~MEKnlisMarEvEKLRaElana 119 (393)
+|..+--+-.+-+|.|-|-+.|++.
T Consensus 87 Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 87 LQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhchhhhhHhhhc
Confidence 3333444444556777777777653
No 410
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=23.22 E-value=1.1e+02 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=14.0
Q ss_pred HhhhhhhccccccccCCCchhHHHHHHHHhHHHH
Q 016220 28 VYSKALHFGHPWICESSSPQYYFLHLAFQHCYCA 61 (393)
Q Consensus 28 ~~~k~~h~~h~l~~e~~~~~~~~~~~~~~~~~~~ 61 (393)
.+.|-+-..||-..-.......+|..|.+-|+..
T Consensus 38 aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp 71 (181)
T 3uo3_A 38 EYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDP 71 (181)
T ss_dssp HHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSH
T ss_pred HHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcCh
Confidence 3444444557622111222334455554444433
No 411
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.17 E-value=62 Score=30.00 Aligned_cols=16 Identities=0% Similarity=-0.174 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhhhh
Q 016220 67 WSKNAITFHLCRGTYE 82 (393)
Q Consensus 67 id~lrqElqr~R~a~E 82 (393)
++.|++|.+|+|..++
T Consensus 45 ~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 45 VADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3333334444443333
No 412
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=23.11 E-value=1.9e+02 Score=26.09 Aligned_cols=38 Identities=11% Similarity=-0.108 Sum_probs=23.0
Q ss_pred cccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHL 76 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr 76 (393)
+|+.||-.+|.-.++..+.+.| ++++........+|..
T Consensus 104 ~lTeErRkelvK~~k~~~E~aK-vaiRniRrda~~~lKk 141 (185)
T 1wqg_A 104 QLTEERRRELVKQAKHKGEEAK-VSVRNIRRKAMEELHR 141 (185)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4889987666666666666654 3455554444555554
No 413
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=23.11 E-value=2.1e+02 Score=25.85 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=34.5
Q ss_pred cccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccch----hhHHHHHHHHHHHHHHHHH
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYN----DHLESLQVMEKNYITMATE 108 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~----e~~Eq~q~MEKnlisMarE 108 (393)
+|+.||-.+|.-.++..+.+.| ++++........+|..+- -+|...- ...+++|.|=+.+|.-.-|
T Consensus 104 ~lTeErRkelvK~~k~~~E~aK-vaiRniRrda~~~lKk~~----K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1is1_A 104 PLTEERRKDLVKIVRGEAEGGR-VAVRNIRRDANNDLKALL----KDKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh----hcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889997666666666666654 455555555555555431 1111111 1344566666666554433
No 414
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=23.03 E-value=4.2e+02 Score=24.33 Aligned_cols=58 Identities=3% Similarity=-0.080 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLE---SLQVMEKNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~E---q~q~MEKnlisMarEvEKLRaElanae 120 (393)
+++.++.+++-++..+..++.-.....|.+. ++...+.+++..-.+++..+++|...-
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~a~~~~~~a~~~~~~a~~~L~~l~ 229 (446)
T 3pik_A 169 AEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKRQGELAQANNALQLLL 229 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555554444455443 344567788888888888888887643
No 415
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=22.95 E-value=2.1e+02 Score=25.00 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
|++-.|+|-.--.|+|++|--. ++-..--|+.| |+-++..|||..-.-|+
T Consensus 9 llahrenlmdsakrarsaitdd----mdpadaaqave-nvksiiseiestdeaia 58 (141)
T 2r9i_A 9 LLAHRENLMDSAKRARSAITDD----MDPADAAQAVE-NVKSIISEIESTDEAIA 58 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTT----SCHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccC----CChHHHHHHHH-HHHHHHHHHhhhHHHHH
Confidence 6777889999999999999643 45555666665 67777888887655554
No 416
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.94 E-value=88 Score=21.82 Aligned_cols=25 Identities=4% Similarity=-0.211 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGTY 81 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a~ 81 (393)
|-|+.-|..|-..|..|+.|+|.-+
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456667788888888888887643
No 417
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=22.91 E-value=1.8e+02 Score=27.97 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCC
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL-RAELMNAPNV 122 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKL-RaElanae~~ 122 (393)
-|+.|..|+++-=+...--=+.+..+-.|.+..=+.|+.-|.|++.| |+|++|++..
T Consensus 78 ~l~~l~~~I~~~L~~lg~~V~~RL~L~~~~~~~~~~l~~aa~~l~eL~~tqvaNa~t~ 135 (290)
T 3i9w_A 78 AIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTS 135 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443322222222334445556666667777777777654 8888887654
No 418
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.87 E-value=1.7e+02 Score=23.57 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhc
Q 016220 104 TMATEVEKLRAELMN 118 (393)
Q Consensus 104 sMarEvEKLRaElan 118 (393)
.+..||..||.-|..
T Consensus 61 ~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 61 QLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 355677777776664
No 419
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.83 E-value=2.7e+02 Score=21.68 Aligned_cols=65 Identities=9% Similarity=0.001 Sum_probs=37.1
Q ss_pred chhHHHHHHHHhHHHHH-------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAI-------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 115 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaE 115 (393)
+....+..|.+-+++++ ..+=|.--++=|+.+-.++.+|+.... .+.+...+..--..+|+|+..
T Consensus 11 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~-----k~~ir~K~~eY~~RAE~LK~~ 82 (83)
T 2w2u_A 11 AQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGST-----AAIYEQMINEYKRRIEVLKEL 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSST-----HHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666665 244455555556666677777754332 334445555555667777653
No 420
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=22.82 E-value=2e+02 Score=24.59 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 016220 101 NYITMATEVEKLRA 114 (393)
Q Consensus 101 nlisMarEvEKLRa 114 (393)
.++.+++.+|..=-
T Consensus 82 ~~l~i~~~lERIgD 95 (217)
T 1xwm_A 82 AAIKIASDIERIAD 95 (217)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666543
No 421
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=22.68 E-value=85 Score=33.82 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 64 LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
+.|++.|++|+..+...|++=++. |+..+.+- --+..|++.++.+..+
T Consensus 636 ~le~~kl~~E~~~l~~~i~~l~~i----L~~~~~~~---~~i~~el~~i~~~yg~ 683 (692)
T 2xcs_B 636 GLERDKIEAEYNELLNYISELETI----LADEEVLL---QLVRDELTEIRDRFGD 683 (692)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHH---HHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHH---HHHHHHHHHHHHHcCC
Confidence 567777777777666555432221 11111111 1356778888877765
No 422
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=22.63 E-value=2.1e+02 Score=26.71 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=6.5
Q ss_pred HHHHHHHHhc
Q 016220 109 VEKLRAELMN 118 (393)
Q Consensus 109 vEKLRaElan 118 (393)
+++++++|++
T Consensus 316 ~~~~~~~~~~ 325 (328)
T 3u65_B 316 YEKIKHLLYS 325 (328)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5667777664
No 423
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.38 E-value=3.9e+02 Score=23.28 Aligned_cols=13 Identities=23% Similarity=-0.184 Sum_probs=5.3
Q ss_pred hHHHHHHHHhHHH
Q 016220 48 YYFLHLAFQHCYC 60 (393)
Q Consensus 48 ~~~~~~~~~~~~~ 60 (393)
..+|-.+.++|+.
T Consensus 24 ~~elik~L~~le~ 36 (152)
T 4fla_A 24 TEELIKALQDLEN 36 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 3344444444433
No 424
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical chemistry, metalloenzyme, iron-sulfur center; 1.75A {Clostridium scatologenes} PDB: 2yaj_A*
Probab=22.37 E-value=1.5e+02 Score=32.72 Aligned_cols=59 Identities=8% Similarity=-0.188 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcc----chhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCC
Q 016220 63 FLKIWSKNAITFHLCRGTYEYEKKF----YNDHLESLQVME---KNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~EyEKK~----~~e~~Eq~q~ME---KnlisMarEvEKLRaElanae~ 121 (393)
|+..|+.|.+|++...+.++.+... ..+..+..++|. +-+|..|+-.-+|+.||+..++
T Consensus 232 l~~G~~gli~e~~~~l~~l~~~~~~~g~~~~~k~~fy~A~ii~~eavi~~a~RyA~laeelA~~e~ 297 (897)
T 2y8n_A 232 LQYGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKEITKGLSAWCENYSKRAKYLASIET 297 (897)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhhHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999888877643222 234444444443 4455555555567777765544
No 425
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=22.27 E-value=99 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016220 98 MEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 98 MEKnlisMarEvEKLRaEl 116 (393)
||+.+-.+.+|||.+..+|
T Consensus 18 lEnIv~~l~~eve~~~~~l 36 (65)
T 3m0d_C 18 FENIVAVLNKEVEASHLAL 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3333333444444444443
No 426
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.17 E-value=1e+02 Score=21.52 Aligned_cols=23 Identities=4% Similarity=-0.182 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 016220 58 CYCAIFLKIWSKNAITFHLCRGT 80 (393)
Q Consensus 58 ~~~~~l~~Eid~lrqElqr~R~a 80 (393)
-|+..|..|-..|+.|..|+|.-
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 35566677777777777777654
No 427
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.04 E-value=77 Score=23.90 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 016220 99 EKNYITMATEVEKLRAELM 117 (393)
Q Consensus 99 EKnlisMarEvEKLRaEla 117 (393)
++--..+..||++||.+|.
T Consensus 43 ~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 43 LSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334445667777777764
No 428
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=21.80 E-value=3.6e+02 Score=23.34 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=5.9
Q ss_pred hhhHHhhhhhh
Q 016220 24 LFRQVYSKALH 34 (393)
Q Consensus 24 ~~~~~~~k~~h 34 (393)
..|..+...+|
T Consensus 65 ~~R~~Yd~~l~ 75 (171)
T 1fpo_A 65 LMRAEYLLSLH 75 (171)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHHhc
Confidence 44555555555
No 429
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.80 E-value=1.3e+02 Score=27.37 Aligned_cols=38 Identities=5% Similarity=-0.092 Sum_probs=0.0
Q ss_pred HHHHHhHHHHH------HHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHH
Q 016220 52 HLAFQHCYCAI------FLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQ 96 (393)
Q Consensus 52 ~~~~~~~~~~~------l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q 96 (393)
..+++||-+-+ |+++++.|++|.+|++.-.+ +-++|+.
T Consensus 140 ~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n-------~~l~qlE 183 (184)
T 3w03_C 140 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN-------DVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhc
No 430
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=21.70 E-value=3.8e+02 Score=24.66 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 016220 96 QVMEKNYITMATEVEKLRAELMNA 119 (393)
Q Consensus 96 q~MEKnlisMarEvEKLRaElana 119 (393)
...+.+++..-.++...+.+|..+
T Consensus 409 ~~a~~~~~~a~~~~~~a~~~L~~~ 432 (442)
T 1yc9_A 409 LNNQRALVNLQSRAFSLDLALIHA 432 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777654
No 431
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.64 E-value=1.3e+02 Score=22.67 Aligned_cols=39 Identities=15% Similarity=-0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---hhhhhhhhhhccchhhHHHHHH
Q 016220 59 YCAIFLKIWSKNAITFH---LCRGTYEYEKKFYNDHLESLQV 97 (393)
Q Consensus 59 ~~~~l~~Eid~lrqElq---r~R~a~EyEKK~~~e~~Eq~q~ 97 (393)
++++||.|--.||+||+ +-=+-+|-|-..--|.+-|+|.
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
No 432
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.60 E-value=1.5e+02 Score=24.01 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhhhhhh-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016220 64 LKIWSKNAITFHLCRGTYEY-EKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 117 (393)
Q Consensus 64 ~~Eid~lrqElqr~R~a~Ey-EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEla 117 (393)
+.-|+.|+..|.-++.+|+- |+. ..+-+..++.+=+ .+-+||++|+.++.
T Consensus 42 ~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~---~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 42 QDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVK---NIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 33344455555555555555 444 4444444444333 34567888888874
No 433
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.55 E-value=1.2e+02 Score=27.60 Aligned_cols=12 Identities=8% Similarity=-0.296 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 016220 63 FLKIWSKNAITF 74 (393)
Q Consensus 63 l~~Eid~lrqEl 74 (393)
|++|||.|..||
T Consensus 140 LqkeiD~LEDeL 151 (175)
T 3mud_A 140 NEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555555
No 434
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=21.51 E-value=1.2e+02 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 92 LESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..++|.+.+++-.-.+|+|+++.||.-
T Consensus 230 ~~~l~~~r~~~~~~~~~~~~~~~~l~~ 256 (265)
T 2q12_A 230 GTSVQNVRREMDSDIETMQQTIEDLEV 256 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555666666677777777753
No 435
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=21.48 E-value=1.8e+02 Score=24.80 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 016220 60 CAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMAT-----EVEKLRAEL 116 (393)
Q Consensus 60 ~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMar-----EvEKLRaEl 116 (393)
+.-|.++|++|+.||-.+|-.----.- ..+.+.+-+++--|-. |.+.||.--
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~atgql-----~~~Ir~vRR~IARi~Tvl~er~~~~lr~~y 70 (120)
T 3u5e_h 14 KEQLASQLVDLKKELAELKVQKLSRPS-----LPKIKTVRKSIACVLTVINEQQREAVRQLY 70 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSC-----CTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999965433222 7788888888766544 444555433
No 436
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=21.41 E-value=2.4e+02 Score=24.93 Aligned_cols=21 Identities=5% Similarity=-0.114 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYEY 83 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~Ey 83 (393)
+.+.|+.++++|..+|.+|+-
T Consensus 249 ~~~~l~~~~~~l~~~~~~l~~ 269 (290)
T 3b1f_A 249 VLDRIENFKQRLDEVSNLIKA 269 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 466777777777777777764
No 437
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=21.38 E-value=84 Score=29.36 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHhc
Q 016220 92 LESLQVMEKNYITMATE-------VEKLRAELMN 118 (393)
Q Consensus 92 ~Eq~q~MEKnlisMarE-------vEKLRaElan 118 (393)
.|-+|.+|-|++++..| ++|||+|+.+
T Consensus 29 ~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~ 62 (206)
T 3oa7_A 29 TEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDN 62 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444455555555444 3455555543
No 438
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.37 E-value=88 Score=30.99 Aligned_cols=57 Identities=11% Similarity=-0.131 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh--hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016220 61 AIFLKIWSKNAITFHLCRGTYE--YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 118 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~E--yEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElan 118 (393)
..|++|+..+.+||.. +..-| --|+.-.++-++++.+|+.+..+..|++.|-..|=|
T Consensus 45 ~~l~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 45 QEVQTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3466777777776654 22111 112333345567777777777776666555555544
No 439
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=21.35 E-value=2.7e+02 Score=25.30 Aligned_cols=12 Identities=0% Similarity=-0.335 Sum_probs=5.2
Q ss_pred hhHHHHHHHHhH
Q 016220 47 QYYFLHLAFQHC 58 (393)
Q Consensus 47 ~~~~~~~~~~~~ 58 (393)
|..+...+++++
T Consensus 124 La~~t~~~~~~I 135 (213)
T 3g67_A 124 LSNETNEVTKQI 135 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 440
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=21.10 E-value=2.2e+02 Score=24.54 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 016220 105 MATEVEKLRAELMNAPNVDR 124 (393)
Q Consensus 105 MarEvEKLRaElanae~~~~ 124 (393)
+-+.|..|+.+|.+|...+-
T Consensus 58 ~e~rI~~L~~~L~~A~vid~ 77 (158)
T 2p4v_A 58 IDRRVRYLTKCMENLKIVDY 77 (158)
T ss_dssp HHHHHHHHHHHHHHCEECCC
T ss_pred HHHHHHHHHHHHhhCeecCC
Confidence 34567778888888776554
No 441
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=20.82 E-value=53 Score=26.94 Aligned_cols=35 Identities=17% Similarity=0.014 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccchhhHHH
Q 016220 57 HCYCAIFLKIWSKNAITFHLCRGTYEYEKKFYNDHLES 94 (393)
Q Consensus 57 ~~~~~~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq 94 (393)
.-|--.|+..|..|+.||..+| +-||.+-.+.+..
T Consensus 25 ~eKsk~lq~QL~~Lk~ELe~lk---~~~k~t~~D~lh~ 59 (90)
T 1ef1_C 25 AEKNERVQKHLKALTSELANAR---DESKKTANDMIHA 59 (90)
T ss_dssp HHHCHHHHHHHHHHHHHHHTTB---CTTCCCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHh---hhhhcchhHHHHH
Confidence 3345668888888999988887 4577776666543
No 442
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=20.80 E-value=3e+02 Score=26.18 Aligned_cols=31 Identities=6% Similarity=-0.136 Sum_probs=21.4
Q ss_pred HHHHhhhhhhhhhhccchhhHHHHHHHHHHH
Q 016220 72 ITFHLCRGTYEYEKKFYNDHLESLQVMEKNY 102 (393)
Q Consensus 72 qElqr~R~a~EyEKK~~~e~~Eq~q~MEKnl 102 (393)
+|++++=..||-.+.+.++.-|=.++|.+-+
T Consensus 331 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~ 361 (486)
T 3mwu_A 331 KQLTEIFRKLDTNNDGMLDRDELVRGYHEFM 361 (486)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceeeHHHHHHHHHHhh
Confidence 4555666667788888888877766665443
No 443
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.77 E-value=4.4e+02 Score=23.25 Aligned_cols=71 Identities=11% Similarity=-0.044 Sum_probs=37.2
Q ss_pred chhHHHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 46 PQYYFLHLAFQHCYCAIFLKI-----WSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 116 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~E-----id~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaEl 116 (393)
....+|+..+..||-+--++| +..|.++|.++=..++-+|..+....+.+..+=..|.+|---.-.|.-||
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 345556666666665554433 33566666666666666666666555555444444444433333333333
No 444
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=20.72 E-value=4.7e+02 Score=23.64 Aligned_cols=8 Identities=0% Similarity=-0.317 Sum_probs=4.0
Q ss_pred HHhHHHHH
Q 016220 55 FQHCYCAI 62 (393)
Q Consensus 55 ~~~~~~~~ 62 (393)
..|++|++
T Consensus 118 A~Evr~La 125 (213)
T 3g67_A 118 ANEVQNLS 125 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555544
No 445
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=20.70 E-value=1.4e+02 Score=32.22 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC
Q 016220 62 IFLKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVME---KNYITMATEVEKLRAELMNAP 120 (393)
Q Consensus 62 ~l~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~ME---KnlisMarEvEKLRaElanae 120 (393)
.|+..|+.|.+|++...+.++..+....|..+..++|. +-+|..|+-.-+|+.||+..+
T Consensus 163 vl~~G~~~li~~~~~~~~~~~~~~~~~~~k~~fy~A~~i~~eavi~~a~Rya~la~e~A~~e 224 (776)
T 2f3o_A 163 LLRRGFRWFLEESERRIRALEESGVYEGEKYSFYQAAKIVSEAVINYGLRYSKLAEELAESE 224 (776)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36778888888888888777754333444444444443 334434444446666666444
No 446
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.67 E-value=84 Score=22.53 Aligned_cols=22 Identities=5% Similarity=-0.141 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 016220 61 AIFLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 61 ~~l~~Eid~lrqElqr~R~a~E 82 (393)
..|..+|+.|.++|..+++.|.
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4477788888888888877654
No 447
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.63 E-value=3.5e+02 Score=27.92 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=12.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016220 88 YNDHLESLQVMEKNYITMATEVEKLRA 114 (393)
Q Consensus 88 ~~e~~Eq~q~MEKnlisMarEvEKLRa 114 (393)
...++.++|.+..++-+-...+|+.-.
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444444333
No 448
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.51 E-value=53 Score=25.92 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=26.5
Q ss_pred ccccccCCCchhHHHHHHHHhHH---HHHHHHHHHHHHHHHHhhh
Q 016220 37 HPWICESSSPQYYFLHLAFQHCY---CAIFLKIWSKNAITFHLCR 78 (393)
Q Consensus 37 h~l~~e~~~~~~~~~~~~~~~~~---~~~l~~Eid~lrqElqr~R 78 (393)
|||+.-+. .+..+|+.|.+..| +++|..=|..|++|+.+..
T Consensus 23 dPL~EQ~~-~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 23 DPLLQQIH-NITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp SHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 67765553 46666777766544 3456777777777777664
No 449
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=20.51 E-value=42 Score=33.42 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHHHHHHhcCCC
Q 016220 99 EKNYITMA-TEVEKLRAELMNAPN 121 (393)
Q Consensus 99 EKnlisMa-rEvEKLRaElanae~ 121 (393)
+..|..|| .|+++|..+|...+.
T Consensus 71 D~e~~~~a~~e~~~l~~~~~~le~ 94 (360)
T 2b3t_B 71 DPEMREMAQDELREAKEKSEQLEQ 94 (360)
T ss_dssp ------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 345566655555443
No 450
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=20.45 E-value=1.9e+02 Score=28.59 Aligned_cols=43 Identities=14% Similarity=-0.053 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016220 66 IWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 113 (393)
Q Consensus 66 Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLR 113 (393)
.++.++ +|.-++..++-|+.. .|+++.+++.|-.+-.||+.|-
T Consensus 38 ~~~~~~-~~~~~~~l~~e~~D~----~~e~~~l~~~l~~le~~l~~lL 80 (342)
T 1rq0_A 38 ITNRIK-ETQEFIELLREEGEN----ELEIEKYEKELDQLYQELLFLL 80 (342)
T ss_dssp HHHHHH-HHHHHHTTTTTTTTC----CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 344444 666666655433211 5556666666666655555443
No 451
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.36 E-value=1.2e+02 Score=22.73 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 016220 107 TEVEKLRA 114 (393)
Q Consensus 107 rEvEKLRa 114 (393)
.||..|+.
T Consensus 51 ~E~~~Lk~ 58 (63)
T 1ci6_A 51 KEIQYLKD 58 (63)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 452
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.36 E-value=1.1e+02 Score=31.71 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 016220 63 FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 63 l~~Eid~lrqElqr~R~a~E 82 (393)
|+.-|++++-|||||-.+|+
T Consensus 137 Lq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 137 LQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777778888887766654
No 453
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=20.35 E-value=2.3e+02 Score=25.63 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=22.8
Q ss_pred cccccCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 016220 38 PWICESSSPQYYFLHLAFQHCYCAIFLKIWSKNAITFHL 76 (393)
Q Consensus 38 ~l~~e~~~~~~~~~~~~~~~~~~~~l~~Eid~lrqElqr 76 (393)
+|+.||-.+|.-.++..+.+.| ++++........+|..
T Consensus 104 ~lTeErRkelvK~~k~~~E~aK-vaiRniRrda~~~lKk 141 (185)
T 1ise_A 104 PLTEERRKDLTKIVRGEAEQAR-VAVRNVGRDANDKVKA 141 (185)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4889987666666666666654 3455554444455554
No 454
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=20.33 E-value=1.6e+02 Score=25.34 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHhhhhhhhh-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016220 72 ITFHLCRGTYEY-EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 121 (393)
Q Consensus 72 qElqr~R~a~Ey-EKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~ 121 (393)
++|..+|+-=|. |...+...-|+...+|.-|-.+-.+++ +|++.+...
T Consensus 31 ~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~--~A~vid~~~ 79 (158)
T 2p4v_A 31 KKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCME--NLKIVDYSP 79 (158)
T ss_dssp HHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HCEECCCCS
T ss_pred HHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHh--hCeecCCcc
Confidence 355556644333 333333444555666666655555444 456655443
No 455
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.17 E-value=1.3e+02 Score=26.07 Aligned_cols=16 Identities=6% Similarity=-0.163 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 016220 63 FLKIWSKNAITFHLCR 78 (393)
Q Consensus 63 l~~Eid~lrqElqr~R 78 (393)
+++||..|..-|-.+|
T Consensus 8 ~K~Eiq~L~drLD~~~ 23 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIR 23 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 456
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.14 E-value=1.7e+02 Score=23.87 Aligned_cols=72 Identities=13% Similarity=-0.051 Sum_probs=41.1
Q ss_pred chhHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016220 46 PQYYFLHLAFQHCYCAIF-LKIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 122 (393)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l-~~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEKLRaElanae~~ 122 (393)
.|..+|+.--+||.|+.- +.-|+.|.+=+..- -+|--.++. -.|+-.+.++|..+--|+.||..=|+.++++
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~n-P~~GD~~s~----~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKT-PQMGDPASL----EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-GGGCCGGGS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355566666666555542 33333333322111 111112222 3467778899999999999999888776654
No 457
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=20.12 E-value=1.5e+02 Score=28.03 Aligned_cols=48 Identities=15% Similarity=-0.053 Sum_probs=24.7
Q ss_pred HHHhHHHHHHHHHHHHH-----HHHHHhhhhhhhhhhccchhhHHHHHHHHHH
Q 016220 54 AFQHCYCAIFLKIWSKN-----AITFHLCRGTYEYEKKFYNDHLESLQVMEKN 101 (393)
Q Consensus 54 ~~~~~~~~~l~~Eid~l-----rqElqr~R~a~EyEKK~~~e~~Eq~q~MEKn 101 (393)
..+.|+++++..-...+ .+|++++=..||-.+.+.++.-|=.+.|++-
T Consensus 312 ~~~kl~qa~l~~i~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~ 364 (484)
T 3nyv_A 312 GTQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKEL 364 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCcCCCceEeHHHHHHHHHHH
Confidence 33445555543332222 2344444455666778877766655555443
No 458
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.06 E-value=1.4e+02 Score=23.66 Aligned_cols=32 Identities=9% Similarity=-0.132 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHH-----HHHHHHHHHHHHHhhhhhhh
Q 016220 51 LHLAFQHCYCAI-----FLKIWSKNAITFHLCRGTYE 82 (393)
Q Consensus 51 ~~~~~~~~~~~~-----l~~Eid~lrqElqr~R~a~E 82 (393)
|..|+..++... |..|++.|++|.+.++.-++
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.02 E-value=2.8e+02 Score=22.12 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 016220 65 KIWSKNAITFHLCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK-LRAELMN 118 (393)
Q Consensus 65 ~Eid~lrqElqr~R~a~EyEKK~~~e~~Eq~q~MEKnlisMarEvEK-LRaElan 118 (393)
.+|+.-..|...+=...|+|...-....-++..|-..|=.--+||++ |+.||.+
T Consensus 37 ~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 37 KHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555532211223455555556666666666 6666653
No 460
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=20.00 E-value=2e+02 Score=30.97 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhcC
Q 016220 106 ATEVEKLRAELMNA 119 (393)
Q Consensus 106 arEvEKLRaElana 119 (393)
...+|+|...|.+.
T Consensus 221 l~~~~~lq~~ll~~ 234 (683)
T 1yvl_A 221 LNVTELTQNALIND 234 (683)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
Done!