BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016223
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 213 FIYMSPSVIVKGRVEELI-GIDLSNYAIAAADDCSERLNSYVNPDVLD-AIQRSASQPWV 270
FI ++P + V+ + E+I GID+ I AD CS + P D I A Q V
Sbjct: 290 FIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRV 349
Query: 271 SGKPYAVNSCMPDLGMLL 288
+ + +N+ MPD G ++
Sbjct: 350 TTED-PLNNFMPDTGKIM 366
>pdb|3TZT|A Chain A, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii.
pdb|3TZT|B Chain B, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii
Length = 276
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 208 QSLSKFIYMSPSVIVKGRVEELIGIDLSNYAIAAA 242
++L + +Y+ P +V +++L+ D+S+Y +AAA
Sbjct: 99 ENLGEILYLDPDXLVINPLDDLLRTDISDYILAAA 133
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 202 VIASVHQSLSKFIYMSPSVI-----VKGRVEELIGIDLSNYAIAA 241
+ SVHQ+ + F + + +I +KG ++ + IDLSN A A
Sbjct: 300 IRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLA 344
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 202 VIASVHQSLSKFIYMSPSVI-----VKGRVEELIGIDLSNYAIAA 241
+ SVHQ+ + F + + +I +KG ++ + IDLSN A A
Sbjct: 300 IRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLA 344
>pdb|3U3I|A Chain A, A Rna Binding Protein From Crimean-Congo Hemorrhagic Fever
Virus
Length = 482
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 214 IYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSE 247
IYM P+V+ GR+ E+ G+ +A DD ++
Sbjct: 373 IYMHPAVLTAGRISEM-GVCFGTIPVANPDDAAQ 405
>pdb|4AQF|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQF|B Chain B, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 214 IYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSE 247
IYM P+V+ GR+ E+ G+ +A DD ++
Sbjct: 374 IYMHPAVLTAGRISEM-GVCFGTIPVANPDDAAQ 406
>pdb|4AQF|C Chain C, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQG|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 214 IYMSPSVIVKGRVEELIGIDLSNYAIAAADDCSE 247
IYM P+V+ GR+ E+ G+ +A DD ++
Sbjct: 374 IYMHPAVLTAGRISEM-GVCFGTIPVANPDDAAQ 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,820,950
Number of Sequences: 62578
Number of extensions: 412059
Number of successful extensions: 628
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 13
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)