BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016224
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 50/329 (15%)
Query: 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT-LP 159
+I R VIK + W Y + + +W G+ K L+GH V IT L
Sbjct: 73 HIKRRKVIKPGFIHSPW---KSAYIRQHRIDTNWRRGE-LKSPKVLKGHDDHV--ITCLQ 126
Query: 160 SGSDKLYSGSKDETVRVWDCASGQCAGVI--NLGGEVGCMISEGPWIFIGVTNFVKAWNT 217
+++ SGS D T++VW +G+C + + GG + + I +K WN
Sbjct: 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 186
Query: 218 QTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK--------------------- 255
+T + +L G V M + + +G++D + W
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 256 ----------FNVTTNCFEPAA-----SLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300
++ ++P +L+GH+ V SL + SGS+D SIRVW++
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Query: 301 ETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360
ET CI TLT H S+ + D L+S + D T+K+W L+ N+ +
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
K ++ S +D +V+ +DL +
Sbjct: 367 CLQF----NKNFVITSSDDGTVKLWDLKT 391
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 49/231 (21%)
Query: 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
+ G + L W G + + L GH V + L ++ SGS+D T+RVWD +G
Sbjct: 173 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG 229
Query: 183 QCAGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYA---- 234
QC V+ +G V C+ +G + G +F VK W+ +T T L +L G +VY+
Sbjct: 230 QCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD 288
Query: 235 ------------------------------------MAVGNDLLFAGTQDGAILAWKFNV 258
M + +++L +G D + W
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK- 347
Query: 259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
T C + H AV L N + + S D ++++W+L+T + I+ L
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 83 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 202 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 261 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 93 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 212 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 109 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 228 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 104 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 223 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 282 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 87 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 206 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 87 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 206 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 111 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 230 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 289 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 86 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 205 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 264 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 88 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 207 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 266 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 93 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 212 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G C +
Sbjct: 90 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 124/268 (46%), Gaps = 26/268 (9%)
Query: 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
V + L+ L GH K VS + + L S S D+ +++W G+ I+ G ++G
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG 70
Query: 196 CMISEGPW-----IFIGVTN--FVKAWNTQTNTDL-SLSGPVGQVYA--MAVGNDLLFAG 245
IS+ W + + ++ +K W+ + L +L G V+ ++L+ +G
Sbjct: 71 --ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 246 TQDGAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWNLETL 303
+ D ++ W T C + +L HS ++ V + + S S D R+W+ +
Sbjct: 129 SFDESVRIWDVK-TGMCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 304 QCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTH-NEEHGVL 359
QC++TL + + +S + + +++L+ +LD T+K+W + L+ H NE++ +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
A + G ++ DN V ++L
Sbjct: 245 ANFSV---TGGKWIVSGSEDNMVYIWNL 269
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 92 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 211 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 270 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 90 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 93 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 212 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G C +
Sbjct: 90 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 209 YILAATLDNDLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK+W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 47/255 (18%)
Query: 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
V + L+ L GH K VS + + L S S D+ +++W G+ I+ G ++G
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG 70
Query: 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK 255
IS+ AW++ +N LL + + D + W
Sbjct: 71 --ISD------------VAWSSDSN--------------------LLVSASDDKTLKIWD 96
Query: 256 FNVTTNCFEPAASLKGHSLAVV--SLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
+ + C + +LKGHS V + +N + SGS D S+R+W+++T C++TL H+
Sbjct: 97 VS-SGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 314 SVVMSL-LCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371
V ++ D ++S S D ++W T SG T ++ V + P+ GK
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIW-DTASGQCLKTLIDDDNPPVSFVKFSPN--GKY 209
Query: 372 VLLCSCNDNSVRFYD 386
+L + DN ++ +D
Sbjct: 210 ILAATL-DNDLKLWD 223
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 44/281 (15%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I 198
K L QL GH V + G L SGS D TVRVWD G C V V C+ I
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 199 SEGPWIFIGVT----NFVKAWNTQTNTDLS------------------------LSGPVG 230
E I VT N + W + + L G +
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL--YS 288
V ++ +++ +G+ D ++ W C L GH+ + S + + S
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDV-AQMKCL---YILSGHTDRIYSTIYDHERKRCIS 327
Query: 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348
SMD +IR+W+LE + + TL HT++V L D+FL+S + D +I+ W A D +
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-KF 386
Query: 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
+Y H + + D+ +L S ++N Y+L S
Sbjct: 387 SYHHTNLSAITTFY-VSDN-----ILVSGSENQFNIYNLRS 421
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 42/174 (24%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
W V K L L GH + + S S D T+R+WD +G+
Sbjct: 295 WDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM-------- 345
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
+L G V + + + L + DG+I
Sbjct: 346 -----------------------------YTLQGHTALVGLLRLSDKFLVSAAADGSIRG 376
Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ 307
W N + F + + A+ + V N L SGS +N ++NL + + +
Sbjct: 377 WDANDYSRKFSYHHT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 108/259 (41%), Gaps = 25/259 (9%)
Query: 92 YRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151
+R G I+ R+ + C + + G + + W + + L GH
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD-KNTLECKRILTGHTG 174
Query: 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--------CAGVINLGGEVGCMISEGPW 203
V + L + +GS D TVRVWD +G+ C V++L G M++
Sbjct: 175 SV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT---- 228
Query: 204 IFIGVTNFVKAWNTQTNTDLSLS----GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259
+ W+ + TD++L G V + + + + + D I W T
Sbjct: 229 --CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN---T 283
Query: 260 TNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
+ C E +L GH + L + SGS DN+IR+W++E C++ L H +V +
Sbjct: 284 STC-EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 320 LCWDQFLLSCSLDKTIKVW 338
++ ++S + D IKVW
Sbjct: 343 RFDNKRIVSGAYDGKIKVW 361
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 11/237 (4%)
Query: 158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGVTN-FVKAW 215
L K+ SG +D T+++WD + +C ++ G V C+ + I G ++ V+ W
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 198
Query: 216 NTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL 274
+ T L +L V + N ++ ++D +I W T+ L GH
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRA 257
Query: 275 AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKT 334
AV + + S S D +I+VWN T + ++TL H + L D+ ++S S D T
Sbjct: 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 317
Query: 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391
I++W L V H E L C D++ ++ D ++ +DL + +
Sbjct: 318 IRLWDIECGACLRVLEGHEE----LVRCIRFDNKR---IVSGAYDGKIKVWDLVAAL 367
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD 171
+LC + + + G + W V G ++L L H + V + +G + + SKD
Sbjct: 176 VLCLQYDERVIITGSSDSTVRVWDVNTG-EMLNTLIHHCEAVLHLRFNNG--MMVTCSKD 232
Query: 172 ETVRVWDCASGQCAGV----INLGGEVGCMISEGPWIFIGVTNF-VKAWNTQT-NTDLSL 225
++ VWD AS + + V + + +I + +K WNT T +L
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 226 SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK 285
+G + + + L+ +G+ D I W C L+GH V + +
Sbjct: 293 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRFDNKR 348
Query: 286 LYSGSMDNSIRVWNLET---------LQCIQTLTEHTSVVMSLLCWDQF-LLSCSLDKTI 335
+ SG+ D I+VW+L C++TL EH+ V L +D+F ++S S D TI
Sbjct: 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-FDEFQIVSSSHDDTI 407
Query: 336 KVW 338
+W
Sbjct: 408 LIW 410
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 273 SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLD 332
S V L K+ SG DN+I++W+ TL+C + LT HT V+ L ++ +++ S D
Sbjct: 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSD 192
Query: 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLPS 389
T++VW ++G + T H+ E A+ + + G ++ +C+ D S+ +D+ S
Sbjct: 193 STVRVW-DVNTGEMLNTLIHHCE----AVLHLRFNNG---MMVTCSKDRSIAVWDMAS 242
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 90 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
NL+T + +Q L HT VV+S C + + S +L DKTIK++
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 46/238 (19%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 48 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWNLETLQCI 306
++ W T C + +L HS ++ V + + S S D R+W+ + QC+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 307 QTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTH-NEEHGVLA 360
+TL + + +S + + +++L+ +LD T+K+W + L+ H NE++ + A
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G K L L+GH V S+ + SGS DE+VR+WD +G+C +
Sbjct: 90 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
+ + +G I + + W+T + T + P +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
+ A T D + W ++ C + K + + V G + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVWFATD 342
NL+T + +Q L HT VV+S C + + S +L DKTIK+ F +D
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL-FKSD 314
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 46/238 (19%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K + W DG K + GH+ +S + S S+ L S S D+T+++WD +SG+C +
Sbjct: 48 KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+G ++ NF N Q+N L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWNLETLQCI 306
++ W T C + +L HS ++ V + + S S D R+W+ + QC+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 307 QTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTH-NEEHGVLA 360
+TL + + +S + + +++L+ +LD T+K+W + L+ H NE++ + A
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 112/281 (39%), Gaps = 44/281 (15%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I 198
K L QL GH V + G L SGS D TVRVWD G C V V C+ I
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 199 SEGPWIFIGVT----NFVKAWNTQTNTDLS------------------------LSGPVG 230
E I VT N + W + + L G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL--YS 288
V ++ +++ +G+ D ++ W C L GH+ + S + + S
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDV-AQXKCL---YILSGHTDRIYSTIYDHERKRCIS 327
Query: 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348
S D +IR+W+LE + TL HT++V L D+FL+S + D +I+ W A D +
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-KF 386
Query: 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
+Y H + + D+ +L S ++N Y+L S
Sbjct: 387 SYHHTNLSAITTFY-VSDN-----ILVSGSENQFNIYNLRS 421
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 41/167 (24%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
K L L GH + + S S D T+R+WD +G+
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELX--------------- 345
Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
+L G V + + + L + DG+I W N +
Sbjct: 346 ----------------------YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Query: 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ 307
F + + A+ + V N L SGS +N ++NL + + +
Sbjct: 384 RKFSYHHT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 31/255 (12%)
Query: 94 AGNSKNSNINNRAVIKTDILCRN---WVQGNCMY-GEKCKFLHSWTVGDGFKLLTQLEGH 149
A N N+N + +D+ R+ G + G + + + W + + K++ L+GH
Sbjct: 106 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQGH 164
Query: 150 -QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIG 207
Q + S PSG DKL SGS D TVR+WD +GQC+ +++ G +S G +I
Sbjct: 165 EQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 208 VTNF---VKAWNTQT--------NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
+ V+ W+++T + + S +G VY++ D + +G+ D ++ W
Sbjct: 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 255 KFNVTTNCFEPAA--------SLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQ 304
N + + GH V+S+ N Y SGS D + W+ ++
Sbjct: 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 305 CIQTLTEHTSVVMSL 319
+ L H + V+S+
Sbjct: 344 PLLMLQGHRNSVISV 358
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 196 CMISEGPWIFIGVTN-FVKAWNTQTNTD-LSLSGPVGQVYAMAV--GNDLLFAGTQDGAI 251
C +G ++ G + ++ W+ + + L G +Y++ D L +G+ D +
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL-- 309
W T C + G + VS G + +GS+D ++RVW+ ET ++ L
Sbjct: 190 RIWDLR-TGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 310 -----TEHTSVVMSLLCWD--QFLLSCSLDKTIKVW-----------FATDSGNLEVTYT 351
T H V S++ Q ++S SLD+++K+W +SG EVTY
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
+++ VL++ + E +L D V F+D S
Sbjct: 308 GHKDF-VLSVATTQNDE---YILSGSKDRGVLFWDKKS 341
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198
GF+ + + GH VS +++ D + S S+D+T+++W+ +G C
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT----------- 229
Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
F G +V+ + N D +L + V T++ +
Sbjct: 230 ------FTGHREWVRM--VRPNQDGTLIASCSNDQTVRV----WVVATKECKAELREHRH 277
Query: 259 TTNCFE--PAASLKGHSLAVVSLVVGANK----LYSGSMDNSIRVWNLETLQCIQTLTEH 312
C P +S S A S + K L SGS D +I++W++ T C+ TL H
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337
Query: 313 TSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL 361
+ V +L +F+LSC+ DKT++VW + ++ H EH V +L
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSL 386
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 107/266 (40%), Gaps = 64/266 (24%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205
L GH+ V+ + + S S+D T++VWD +G +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---------------- 147
Query: 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP 265
G T+ V+ D+S LL + + D I W F FE
Sbjct: 148 -GHTDSVQ--------DISFDH----------SGKLLASCSADMTIKLWDFQ----GFEC 184
Query: 266 AASLKGH--SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS-VVMSLLCW 322
++ GH +++ VS++ + + S S D +I++W ++T C++T T H V M
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 323 DQFLL-SCSLDKTIKVW-FATDSGNLEVTYTHNEEHGVLALCGMPDS------------- 367
D L+ SCS D+T++VW AT E+ H V + P+S
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGSET 301
Query: 368 --EGK--PVLLCSCNDNSVRFYDLPS 389
GK P LL D +++ +D+ +
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVST 327
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 268 SLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV--MSLLCWD 323
+L GH V ++ + + S S D +I+VW+ ET +TL HT V +S
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 324 QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382
+ L SCS D TIK+W D E T H +H V ++ MP+ + ++ + D ++
Sbjct: 163 KLLASCSADMTIKLW---DFQGFECIRTMHGHDHNVSSVSIMPNGDH---IVSASRDKTI 216
Query: 383 RFYDLPS 389
+ +++ +
Sbjct: 217 KMWEVQT 223
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
+ G + K + W V G L+T L GH V G+ SG + S + D+T+RVWD +
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 183 QCAGVINLGGEVGCMI---SEGPWIFIG-VTNFVKAWN 216
+C +N + P++ G V VK W
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 116 NWVQGNCMYGEKCKFLHSWTVGDGFKL--------LTQLEGHQKVVSGITLPSGSDKLYS 167
NWV+G ++ KF+ S ++ + L H+ V+ + + + +
Sbjct: 339 NWVRG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 168 GSKDETVRVWDC 179
GS D+TV+VW+C
Sbjct: 398 GSVDQTVKVWEC 409
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 21/255 (8%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMIS 199
+LL L GH V+G+ + S S D+TV++W+ + V G S
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 312
Query: 200 EGPWIFIGVTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
++ VK WN +L+G V+ +A D + + + D + W
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 256 FNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
N + +L GHS +V V+ + S S D ++++WN Q +QTLT H+
Sbjct: 373 RN-----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 426
Query: 314 SVV--MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371
S V ++ DQ + S S DKT+K+W +G L T T V + PD +
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLW--NRNGQLLQTLT-GHSSSVRGVAFSPDGQ--- 480
Query: 372 VLLCSCNDNSVRFYD 386
+ + +D +V+ ++
Sbjct: 481 TIASASDDKTVKLWN 495
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 21/255 (8%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMIS 199
+LL L GH V G+ + S S D+TV++W+ + V G S
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 148
Query: 200 EGPWIFIGVTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
++ VK WN +L+G V+ +A D + + + D + W
Sbjct: 149 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Query: 256 FNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
N + +L GHS +V V+ + S S D ++++WN Q +QTLT H+
Sbjct: 209 RN-----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 262
Query: 314 SVV--MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371
S V ++ Q + S S DKT+K+W +G L T T V + PD +
Sbjct: 263 SSVNGVAFRPDGQTIASASDDKTVKLW--NRNGQLLQTLT-GHSSSVWGVAFSPDGQ--- 316
Query: 372 VLLCSCNDNSVRFYD 386
+ + +D +V+ ++
Sbjct: 317 TIASASDDKTVKLWN 331
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 21/257 (8%)
Query: 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCM 197
G K +LE H V G+ + S S D+TV++W+ + V G
Sbjct: 5 GVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 64
Query: 198 ISEGPWIFIGVTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253
S ++ VK WN +L+G V +A D + + + D +
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 254 WKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE 311
W N + +L GHS +V V+ + S S D ++++WN Q +QTLT
Sbjct: 125 WNRN-----GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 178
Query: 312 HTSVV--MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369
H+S V ++ Q + S S DKT+K+W +G L T T V + PD +
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLT-GHSSSVRGVAFSPDGQ- 234
Query: 370 KPVLLCSCNDNSVRFYD 386
+ + +D +V+ ++
Sbjct: 235 --TIASASDDKTVKLWN 249
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 15/207 (7%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMIS 199
+LL L GH V G+ + S S D+TV++W+ + V G S
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 435
Query: 200 EGPWIFIGVTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
++ VK WN +L+G V +A D + + + D + W
Sbjct: 436 PDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 256 FNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
N + +L GHS +V V+ + S S D ++++WN Q +QTLT H+
Sbjct: 496 RN-----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 549
Query: 314 SVV--MSLLCWDQFLLSCSLDKTIKVW 338
S V ++ Q + S S DKT+K+W
Sbjct: 550 SSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
+LL L GH V G+ + S S D+TV++W+
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
+L G G V ++A +LL + ++D +++WK F P S KGHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
+ A+ Y S S D ++R+W++ T + Q H S VMS+ + ++S S DKTI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
KVW T G L HN+ + + ++ V + S ND V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 101/265 (38%), Gaps = 46/265 (17%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQC---- 140
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+ ++ W V+ N + + D V ++ GND +
Sbjct: 141 -----LATLLGHNDW----VSQVRVVPNEKADDD--------SVTIISAGNDKM------ 177
Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCI 306
+ AW N F+ A GH+ + +L + + S D I +WNL + +
Sbjct: 178 --VKAWNL----NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW-----FATDSGNLEVT-YTHNEEHGVLA 360
TL+ V +++ L+ + IKV+ + D E Y+ E ++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFY 385
L D + L DN +R +
Sbjct: 292 LAWSADGQ---TLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
+L G G V ++A +LL + ++D +++WK F P S KGHS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
+ A+ Y S S D ++R+W++ T + Q H S VMS+ + ++S S DKTI
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
KVW T G L HN+ + + ++ V + S ND V+ ++L
Sbjct: 126 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 46/267 (17%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC
Sbjct: 81 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQC---- 134
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+ ++ W V+ N + + D V ++ GND +
Sbjct: 135 -----LATLLGHNDW----VSQVRVVPNEKADDD--------SVTIISAGNDKM------ 171
Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCI 306
+ AW N F+ A GH+ + +L + + S D I +WNL + +
Sbjct: 172 --VKAWNL----NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Query: 307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW-----FATDSGNLEVT-YTHNEEHGVLA 360
TL+ V +++ L+ + IKV+ + D E Y+ E ++
Sbjct: 226 YTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 285
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387
L D + L DN +R + +
Sbjct: 286 LAWSADGQ---TLFAGYTDNVIRVWQV 309
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
+L G G V ++A +LL + ++D +++WK F P S KGHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
+ A+ Y S S D ++R+W++ T + Q H S VMS+ + ++S S DKTI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
KVW T G L HN+ + + ++ V + S ND V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 46/267 (17%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQC---- 140
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+ ++ W V+ N + + D V ++ GND +
Sbjct: 141 -----LATLLGHNDW----VSQVRVVPNEKADDD--------SVTIISAGNDKM------ 177
Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCI 306
+ AW N F+ A GH+ + +L + + S D I +WNL + +
Sbjct: 178 --VKAWNL----NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW-----FATDSGNLEVT-YTHNEEHGVLA 360
TL+ V +++ L+ + IKV+ + D E Y+ E ++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387
L D + L DN +R + +
Sbjct: 292 LAWSADGQ---TLFAGYTDNVIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
+L G G V ++A +LL + ++D +++WK F P S KGHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
+ A+ Y S S D ++R+W++ T + Q H S VMS+ + ++S S DKTI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
KVW T G L HN+ + + ++ V + S ND V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 46/267 (17%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQC---- 140
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+ ++ W V+ N + + D V ++ GND +
Sbjct: 141 -----LATLLGHNDW----VSQVRVVPNEKADDD--------SVTIISAGNDKM------ 177
Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCI 306
+ AW N F+ A GH+ + +L + + S D I +WNL + +
Sbjct: 178 --VKAWNL----NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW-----FATDSGNLEVT-YTHNEEHGVLA 360
TL+ V +++ L+ + IKV+ + D E Y+ E ++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVS 291
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387
L D + L DN +R + +
Sbjct: 292 LAWSADGQ---TLFAGYTDNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
+L G G V ++A +LL + ++D +++WK F P S KGHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
+ A+ Y S S D ++R+W++ T + Q H S VMS+ + ++S S DKTI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
KVW T G L HN+ + + ++ V + S ND V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 46/267 (17%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQC---- 140
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+ ++ W V+ N + + D V ++ GND +
Sbjct: 141 -----LATLLGHNDW----VSQVRVVPNEKADDD--------SVTIISAGNDKM------ 177
Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCI 306
+ AW N F+ A GH+ + +L + + S D I +WNL + +
Sbjct: 178 --VKAWNL----NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW-----FATDSGNLEVT-YTHNEEHGVLA 360
TL+ V +++ L+ + IKV+ + D E Y+ E ++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387
L D + L DN +R + +
Sbjct: 292 LAWSADGQ---TLFAGYTDNVIRVWQV 315
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV-TTNCFEPAASLKGHSLAVVSLVVGANK 285
G V Q+ D++ + ++D I+ WK TN P +L+GHS V +V+ ++
Sbjct: 16 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 75
Query: 286 LY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL--CWDQFLLSCSLDKTIKVW 338
+ SGS D ++R+W+L T + HT V+S+ ++ ++S S DKTIK+W
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 31/218 (14%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMI----SE 200
GH K V + S + ++ SGS+D+T+++W+ G C + V C+ S
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 201 GPWIF-IGVTNFVKAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
P I G VK WN N L + G G + + V D L +G +DG + W
Sbjct: 162 NPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVVGANKLY-SGSMDNSIRVWNLE--------TLQCI 306
N + + +L G + + +L N+ + + SI++W+LE + I
Sbjct: 221 LNEGKHLY----TLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 275
Query: 307 QTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFAT 341
T ++ + L W Q L + D ++VW T
Sbjct: 276 STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 48/204 (23%)
Query: 146 LEGHQKVVSGI-TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
L+GH V+ I T P D + S S+D+T+ +W +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE--------------------- 49
Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAILAWKFNVTTNC 262
TN+ +L G V + + +D FA G+ DG + W T
Sbjct: 50 ----TNYGIP-------QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT- 97
Query: 263 FEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTS------ 314
GH+ V+S+ ++ ++ SGS D +I++WN + C T+ + +
Sbjct: 98 ---TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSC 153
Query: 315 VVMSLLCWDQFLLSCSLDKTIKVW 338
V S + ++SC DK +KVW
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVW 177
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 14/134 (10%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMI 198
KL T GH ++ +T+ SG KD +WD G+ ++ G + C
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS 242
Query: 199 SEGPWIFIGVTNFVKAWNTQ------------TNTDLSLSGPVGQVYAMAVGNDLLFAGT 246
W+ +K W+ + +T P A + LFAG
Sbjct: 243 PNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 302
Query: 247 QDGAILAWKFNVTT 260
D + W+ + T
Sbjct: 303 TDNLVRVWQVTIGT 316
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV-TTNCFEPAASLKGHSLAVVSLVVGANK 285
G V Q+ D++ + ++D I+ WK TN P +L+GHS V +V+ ++
Sbjct: 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98
Query: 286 LY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL--CWDQFLLSCSLDKTIKVW 338
+ SGS D ++R+W+L T + HT V+S+ ++ ++S S DKTIK+W
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 31/218 (14%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMI----SE 200
GH K V + S + ++ SGS+D+T+++W+ G C + V C+ S
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 201 GPWIF-IGVTNFVKAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
P I G VK WN N L + G G + + V D L +G +DG + W
Sbjct: 185 NPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVVGANKLY-SGSMDNSIRVWNLE--------TLQCI 306
N + + +L G + + +L N+ + + SI++W+LE + I
Sbjct: 244 LNEGKHLY----TLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 298
Query: 307 QTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFAT 341
T ++ + L W Q L + D ++VW T
Sbjct: 299 STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 48/204 (23%)
Query: 146 LEGHQKVVSGI-TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
L+GH V+ I T P D + S S+D+T+ +W +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE--------------------- 72
Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAILAWKFNVTTNC 262
TN+ +L G V + + +D FA G+ DG + W T
Sbjct: 73 ----TNYGIP-------QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT- 120
Query: 263 FEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTS------ 314
GH+ V+S+ ++ ++ SGS D +I++WN + C T+ + +
Sbjct: 121 ---TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSC 176
Query: 315 VVMSLLCWDQFLLSCSLDKTIKVW 338
V S + ++SC DK +KVW
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVW 200
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 14/134 (10%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMI 198
KL T GH ++ +T+ SG KD +WD G+ ++ G + C
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS 265
Query: 199 SEGPWIFIGVTNFVKAWNTQ------------TNTDLSLSGPVGQVYAMAVGNDLLFAGT 246
W+ +K W+ + +T P A + LFAG
Sbjct: 266 PNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325
Query: 247 QDGAILAWKFNVTT 260
D + W+ + T
Sbjct: 326 TDNLVRVWQVTIGT 339
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 82/222 (36%), Gaps = 10/222 (4%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
W + K+ GH V G+ + S D+T+RVW+ I L E
Sbjct: 867 WNIDSRLKV-ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAI 251
+ + E + + V N T P QV + L + G +DGAI
Sbjct: 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985
Query: 252 LAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
+ F GH AV + L S S D+ I+VWN +T +
Sbjct: 986 KIIELP-NNRVFSSGV---GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ 1041
Query: 310 TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351
+V L D LLS S D T+KVW +G +E +T
Sbjct: 1042 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-TGRIERDFT 1082
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM--SLLCWDQFLLSCSLDKTIKVWFAT 341
++ S D +++V+ ET + + + H V+ + D ++ +CS DK +K+W
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--- 684
Query: 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
DS ++ +T++E + C + +L ND ++ +DL
Sbjct: 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVV--MSLLCWDQFLLSCSLDKTIKVW 338
L +GS D +++W+L +C T+ HT+ V D+ L SCS D T+++W
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 82/222 (36%), Gaps = 10/222 (4%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
W + K+ GH V G+ + S D+T+RVW+ I L E
Sbjct: 874 WNIDSRLKV-ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 932
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAI 251
+ + E + + V N T P QV + L + G +DGAI
Sbjct: 933 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 992
Query: 252 LAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
+ F GH AV + L S S D+ I+VWN +T +
Sbjct: 993 KIIELP-NNRVFSSGV---GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ 1048
Query: 310 TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351
+V L D LLS S D T+KVW +G +E +T
Sbjct: 1049 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-TGRIERDFT 1089
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM--SLLCWDQFLLSCSLDKTIKVWFAT 341
++ S D +++V+ ET + + + H V+ + D ++ +CS DK +K+W
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--- 691
Query: 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
DS ++ +T++E + C + +L ND ++ +DL
Sbjct: 692 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVV--MSLLCWDQFLLSCSLDKTIKVW 338
L +GS D +++W+L +C T+ HT+ V D+ L SCS D T+++W
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
+L G G V ++A +LL + ++D +++WK F P S KGHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
+ A+ Y S S D ++R+W++ T + Q H S V S+ + ++S S DKTI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
KVW T G L HN+ + + ++ V + S ND V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 100/267 (37%), Gaps = 46/267 (17%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
K L W V G + + GH+ V + + + + SGS+D+T++VW GQC
Sbjct: 87 KTLRLWDVATG-ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQC---- 140
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
+ ++ W V+ N + + D V ++ GN D
Sbjct: 141 -----LATLLGHNDW----VSQVRVVPNEKADDD--------SVTIISAGN--------D 175
Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCI 306
+ AW N F+ A GH+ + +L + + S D I +WNL +
Sbjct: 176 KXVKAWNL----NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAX 231
Query: 307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW-----FATDSGNLEVT-YTHNEEHGVLA 360
TL+ V +++ L+ + IKV+ + D E Y+ E ++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387
L D + L DN +R + +
Sbjct: 292 LAWSADGQ---TLFAGYTDNVIRVWQV 315
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 96/248 (38%), Gaps = 49/248 (19%)
Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
+LEGH VS + L + + S S D ++R+W+ +GQC +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQ-----------------YK 104
Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE 264
F+G T V LS+ A + N + +G +D A+ W NV C
Sbjct: 105 FLGHTKDV----------LSV--------AFSPDNRQIVSGGRDNALRVW--NVKGECMH 144
Query: 265 P---AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321
A S S + A + SG DN ++VW+L T + + L HT+ V S+
Sbjct: 145 TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV 204
Query: 322 WDQFLLSCSLDK--TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379
L S DK ++W T E + +C P+ +C+ +
Sbjct: 205 SPDGSLCASSDKDGVARLWDLTKG---EALSEMAAGAPINQICFSPNR----YWMCAATE 257
Query: 380 NSVRFYDL 387
+R +DL
Sbjct: 258 KGIRIFDL 265
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 85/229 (37%), Gaps = 64/229 (27%)
Query: 131 LHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
L W + +G +K L GH K V + + ++ SG +D +RVW+ G+C
Sbjct: 91 LRLWNLQNGQCQYKFL----GHTKDVLSVAFSPDNRQIVSGGRDNALRVWN-VKGECMHT 145
Query: 188 INLGGE---VGCMIS----EGPWIFIG-VTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVG 238
++ G V C+ + P I G N VK W+ T ++ L G V ++ V
Sbjct: 146 LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS 205
Query: 239 ND--LLFAGTQDGAILAWKFN-------------VTTNCFEP------AASLKGHSL--- 274
D L + +DG W + CF P AA+ KG +
Sbjct: 206 PDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDL 265
Query: 275 ---------------------AVVSLVVGAN--KLYSGSMDNSIRVWNL 300
VS+ A+ LYSG DN IRVW +
Sbjct: 266 ENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 4/193 (2%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG 207
GH V G+ + S D+T+R+W+ + L EV + E + +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 208 VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAILAWKFNVTTNCFEP 265
V + + T QV + L + G ++GAI + V F+
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILEL-VNNRIFQS 1004
Query: 266 AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF 325
K ++ + L S S D I+VWN + +CI +V L +
Sbjct: 1005 RFQHKK-TVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR 1063
Query: 326 LLSCSLDKTIKVW 338
LLS S D T+KVW
Sbjct: 1064 LLSWSFDGTVKVW 1076
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM--SLLCWDQFLLSCSLDKTIKVWFAT 341
++ S D +++V+ ET + + + H V+ + D+F+ +CS+DK +K+W
Sbjct: 634 QRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW--- 690
Query: 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
+S E+ +T++E + C +S +L +D ++ +DL
Sbjct: 691 NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVV--MSLLCWDQFLLSCSLDKTIKVWFATDS 343
L +GS D +++W+L +C T+ HT+ V D+ L SCS D T+K+W AT +
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 344 GN 345
Sbjct: 782 NE 783
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG--VINLGGEVGCMISEGPW 203
L GHQ+ V L S +L S S D TV+VW+ +G V + G + C IS
Sbjct: 1046 LRGHQETVKDFRLLKNS-RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 204 IFIGVT--NFVKAWNTQTNTDL-SLSGPVGQVY--AMAVGNDLLFAGTQDGAILAW 254
F + K W+ L L G G V A +V + LL G +G I W
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 135 TVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
T GD + + L EGHQ+ V + + L S S D T +W V L G
Sbjct: 45 TEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH 104
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
N VK+ A A +LL ++D ++
Sbjct: 105 ---------------ENEVKS------------------VAWAPSGNLLATCSRDKSVWV 131
Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQ--CIQTL 309
W+ + +E + L H+ V +V ++ L S S D++++++ E C TL
Sbjct: 132 WEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190
Query: 310 TEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366
H S V SL +D Q L SCS D+T+++W GN + + +C +
Sbjct: 191 EGHESTVWSLA-FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 367 SEGKPV-----------LLCSCNDNSVRFY 385
+ + L +C D+++R +
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVF 279
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
+L GH V + L S SGS D +R+WD A+G
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR----------------- 467
Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC-F 263
F+G T V LS+ A ++ N + + ++D I W N C +
Sbjct: 468 FVGHTKDV----------LSV--------AFSLDNRQIVSASRDRTIKLW--NTLGECKY 507
Query: 264 EPAASLKGHSLAVVSLVVGANKL----YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
+ +GH V + N L S S D +++VWNL + TL HT V ++
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 320 LCWDQFLLSCS--LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377
L S D + +W + L Y+ + ALC P+ LC+
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKL---YSLEANSVIHALCFSPNR----YWLCAA 620
Query: 378 NDNSVRFYDLPSVIIC 393
++ ++ +DL S I
Sbjct: 621 TEHGIKIWDLESKSIV 636
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMI 198
KL + L GH VS + + SG KD V +WD A G+ + + C
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611
Query: 199 SEGPWIFIGVTNFVKAWNTQTNT---DLSL-----------SGPVGQ----VYAMAVG-- 238
W+ + +K W+ ++ + DL + SGP +Y ++
Sbjct: 612 PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 239 --NDLLFAGTQDGAILAW 254
LF+G DG I W
Sbjct: 672 ADGSTLFSGYTDGVIRVW 689
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 33/222 (14%)
Query: 171 DETVRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFIGVTN-FVKAWNTQTNTDL- 223
+ V VW+ SG + + E + S +G ++ +G+ N V ++ ++ T L
Sbjct: 112 ERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 224 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA 283
+++G +V ++ +L +G++ GAI + + +L+GHS V L +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQI---GTLQGHSSEVCGLAWRS 227
Query: 284 N--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL--CWDQFLLSC---SLDKTIK 336
+ +L SG DN +++W+ + T T H + V ++ W LL+ ++DK I
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 337 VWFAT--------DSGNLEVT----YTHNEEHGVLALCGMPD 366
W A D+G+ +VT H++E +++ G PD
Sbjct: 288 FWNAATGARVNTVDAGS-QVTSLIWSPHSKE--IMSTHGFPD 326
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
C +W + G + +H V + L+GH V G+ S +L SG D
Sbjct: 181 CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240
Query: 174 VRVWDCAS 181
V++WD S
Sbjct: 241 VQIWDARS 248
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN A L+ +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTNKVH-AIPLRSSWVM 101
Query: 276 VVSLVVGANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTSVVM-SLLCWDQFLLSCS 330
+ N + G +DN ++NL+T ++ + L HT + D +++ S
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
D T +W H + V++L PD+ + + D S + +D+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPDTR---LFVSGACDASAKLWDV 213
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN A L+ +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTNKVH-AIPLRSSWVM 101
Query: 276 VVSLVVGANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTSVVM-SLLCWDQFLLSCS 330
+ N + G +DN ++NL+T ++ + L HT + D +++ S
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
D T +W H + V++L PD+ + + D S + +D+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPDTR---LFVSGACDASAKLWDV 213
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM----------- 197
H +VV +T+ + + +Y+G K V+VWD + G + ++ C+
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKG-CVKVWDISH---PGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 198 ISEGPWIFIG-VTNFVKAWNTQTNT-----DLSLSGPVGQVYAMAVGNDLLFAGTQDGAI 251
+ +G + +G + + W+ T +L+ S P A++ + + F+ DG I
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 252 LAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
W + T + +GH+ + + + KL++G +DN++R W+L + +Q
Sbjct: 166 AVWDLHNQTLVRQ----FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ- 220
Query: 310 TEHTSVVMSL 319
+ TS + SL
Sbjct: 221 HDFTSQIFSL 230
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 8/164 (4%)
Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--IS 199
L+ Q +GH S I + + KL++G D TVR WD G+ + ++ +
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 200 EGPWIFIGVTNF---VKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF 256
G W+ +G+ + V N L L A + +D + AW+
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300
+ F+ S + S+ + V + +GS D V+ +
Sbjct: 295 PYGASIFQ---SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 241 LLFAGTQDGAILAWK-FNVTTNCFE--PAASLKGHSLAVVSLVVGANKLY--SGSMDNSI 295
+L +G++D ++ WK + N + P +L GH+ V L + + S S D ++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 296 RVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338
R+W+L T + H S V S+ ++ +LS ++ IK+W
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 54/249 (21%)
Query: 146 LEGHQ----KVVSGITLPSGSDK--LYSGSKDETVRVWDCASGQCAGVINLG-------- 191
LEGH +V+G + D L SGS+D+TV +W + G +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 192 --------GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND-- 240
+ C W ++ W+ +T T G +VY++A D
Sbjct: 77 HFVSDLALSQENCFAISSSW-----DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS-----LAVVSLVVGANKL-----YSG 289
+L AG + L +N+ C +A + HS + ++ ANK+ Y
Sbjct: 132 QILSAGAEREIKL---WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 290 SM--DNSIRVWNLETLQCIQTLTEHTSVV--MSLLCWDQFLLSCSLDKTIKVWFATDSGN 345
S+ D ++VWN Q T H S V +S+ +++ + DK + +W
Sbjct: 189 SVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW-----DI 242
Query: 346 LEVTYTHNE 354
L +TY E
Sbjct: 243 LNLTYPQRE 251
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
F++ + H+ V+ +++ + +G KD+ + +WD + G I+
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 200 EGP---WIFIGVTNFVKAWNTQTNTDLSL----SGPVGQVYAMAVGN------------D 240
P W+ +G VK +N T + + + P+ + N
Sbjct: 263 FNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322
Query: 241 LLFAGTQDGAILAWKFNVTTN 261
LFAG DG I + F + N
Sbjct: 323 KLFAGFTDGVIRTFSFETSAN 343
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 32/262 (12%)
Query: 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE----V 194
G++L L+GH + V + S K+ S S+D TVR+W Q G + G+
Sbjct: 7 GYQLSATLKGHDQDVRDVVAVDDS-KVASVSRDGTVRLW-SKDDQWLGTVVYTGQGFLNS 64
Query: 195 GCMISEGPWIFIG----VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDG 249
C SE + G N V + T L +L G G V +++ + ++ +G+ D
Sbjct: 65 VCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDK 124
Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCI 306
WK +L+ H+ +V V NK + S D +I++W + + I
Sbjct: 125 TAKVWKEG------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QNDKVI 176
Query: 307 QTLTE-HTSVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364
+T + H VV L D +SCS D IK+ +G++ TY +E V + +
Sbjct: 177 KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKL-VDXHTGDVLRTYEGHESF-VYCIKLL 234
Query: 365 PDSEGKPVLLCSC-NDNSVRFY 385
P+ + + SC D +VR +
Sbjct: 235 PNGD-----IVSCGEDRTVRIW 251
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
+L EGH+ V I L D + S +D TVR+W +G VI L
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITL 264
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN A L+ +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVH-AIPLRSSWVM 101
Query: 276 VVSLVVGANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTSVVM-SLLCWDQFLLSCS 330
+ N + G +DN ++NL+T ++ + L HT + D +++ S
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
D T +W H + V++L PD+ + + D S + +D+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPDTR---LFVSGACDASAKLWDV 213
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN A L+ +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVH-AIPLRSSWVM 101
Query: 276 VVSLVVGANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTSVVM-SLLCWDQFLLSCS 330
+ N + G +DN ++NL+T ++ + L HT + D +++ S
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
D T +W H + V++L PD+ + + D S + +D+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPDTR---LFVSGACDASAKLWDV 213
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275
Q T +L G + ++YAM G D LL + +QDG ++ W + TTN A L+ +
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVH-AIPLRSSWVM 112
Query: 276 VVSLVVGANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTSVVM-SLLCWDQFLLSCS 330
+ N + G +DN ++NL+T ++ + L HT + D +++ S
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 172
Query: 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
D T +W H + V++L PD+ + + D S + +D+
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPDTR---LFVSGACDASAKLWDV 224
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP--- 202
LEGHQ V + + S S D +R+WD +G+ I+ G ++ P
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 203 ----WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
+G N + + L G A + L +G DG I F++
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI--FDI 193
Query: 259 TTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316
T +L+GH++ + SL + L + S D I++++++ TL+ H S V
Sbjct: 194 ATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 251
Query: 317 MSL 319
+++
Sbjct: 252 LNV 254
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 25/216 (11%)
Query: 142 LLTQLEGHQ----KVVSGITLPSGSDKLYSGSKDETVRVWD----------CASGQCAGV 187
L Q + H V G S+ + +GS D+ V+VW G GV
Sbjct: 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGV 83
Query: 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVGQ-VYAMAVGNDLLFA 244
+++ I+ + ++ W+ + + +GPV A + + L
Sbjct: 84 VSVDISHTLPIAASS----SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ 304
GT G + F V + E + +G + ++ L SG++D I ++++ T +
Sbjct: 140 GTHVGKVNI--FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197
Query: 305 CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338
+ TL H + SL Q L++ S D IK++
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
KLL LEGH + +T S L + S D ++++D AG ++
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWK--FNVTTNCFEPAASLKGHSLAVVSLV-VGA 283
GP+ V N LL + + DG + W + NCF GHS ++VS VG
Sbjct: 248 GPI-SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF------YGHSQSIVSASWVGD 300
Query: 284 NKLYSGSMDNSIRVWNLE 301
+K+ S SMD S+R+W+L+
Sbjct: 301 DKVISCSMDGSVRLWSLK 318
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGH--SLAVVSLVVGANKLYSGSMDNS 294
V +D GAI ++ T P L GH ++V+ L S S D +
Sbjct: 215 VDDDKFVIPGPKGAIFVYQITEKT----PTGKLIGHHGPISVLEFNDTNKLLLSASDDGT 270
Query: 295 IRVW---NLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351
+R+W N + C ++ S+V + D ++SCS+D ++++W + L ++
Sbjct: 271 LRIWHGGNGNSQNCFYGHSQ--SIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV 328
Query: 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
GV G +G+ + D V YDL
Sbjct: 329 ----DGVPIFAGRISQDGQKYAVAFM-DGQVNVYDL 359
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 104/280 (37%), Gaps = 48/280 (17%)
Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
L W+V DG T L GH+ V+ I + + S S D T+R+W+C +G N
Sbjct: 163 LKIWSVKDGSNPRT-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221
Query: 191 GGEVGCMISEGPW-------IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF 243
E P +F+G + +T +L G G+ +
Sbjct: 222 --------KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF-GTYGK---------YVI 263
Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLK---GHSLAVVSLVV---GANKLYSGSMDNSIRV 297
AG G I N F +++ + + SL V AN +Y+G + +
Sbjct: 264 AGHVSGVITVH------NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317
Query: 298 WNLETLQCIQ---TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN----LEV-- 348
W+L + +C + E T + +S D +IK+ +D + +E
Sbjct: 318 WDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFET 377
Query: 349 -TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
T+ + + V C + D E +L +N Y+L
Sbjct: 378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 245 GTQDGAI--LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET 302
GT +G I L FN+ + S + + L S S D +++W+++
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVS----EITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 303 LQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVW 338
+TL H + V + D+ +LS SLD TI++W
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 42/205 (20%)
Query: 145 QLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203
+L GHQK G++ S S L S S D TV +WD IN G + G ++ +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD---------INAGPKEGKIV-DAKA 223
Query: 204 IFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261
IF G + V+ AW+ SL G V D ++ W T
Sbjct: 224 IFTGHSAVVEDVAWHLLHE---SLFGSVA----------------DDQKLMIWDTRSNTT 264
Query: 262 CFEPAASLKGHSLAVVSLVVGANK---LYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVM 317
+P+ + H+ V L L +GS D ++ +W+L L+ + T H +
Sbjct: 265 S-KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIF 323
Query: 318 SLLCW----DQFLLSCSLDKTIKVW 338
+ W + L S D+ + VW
Sbjct: 324 Q-VHWSPHNETILASSGTDRRLNVW 347
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 38/203 (18%)
Query: 145 QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203
+L GHQK G++ P+ S L S S D T+ +WD ++ G + +
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEG----------KVVDAKT 221
Query: 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF 263
IF G T V+ V + L + D ++ W + N
Sbjct: 222 IFTGHTAVVE-----------------DVSWHLLHESLFGSVADDQKLMIWDTR-SNNTS 263
Query: 264 EPAASLKGHSLAVVSLVVGANK---LYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSL 319
+P+ S+ H+ V L L +GS D ++ +W+L L+ + + H +
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ- 322
Query: 320 LCW----DQFLLSCSLDKTIKVW 338
+ W + L S D+ + VW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVW 345
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 104/280 (37%), Gaps = 48/280 (17%)
Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
L W+V DG T L GH+ V+ I + + S S D T+R+W+C +G N
Sbjct: 160 LKIWSVKDGSNPRT-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 218
Query: 191 GGEVGCMISEGPW-------IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF 243
E P +F+G + +T +L G G+ +
Sbjct: 219 --------KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF-GTYGK---------YVI 260
Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLK---GHSLAVVSLVV---GANKLYSGSMDNSIRV 297
AG G I N F +++ + + SL V AN +Y+G + +
Sbjct: 261 AGHVSGVITVH------NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 314
Query: 298 WNLETLQCIQ---TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN----LEV-- 348
W+L + +C + E T + +S D +IK+ +D + +E
Sbjct: 315 WDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFET 374
Query: 349 -TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
T+ + + V C + D E +L +N Y+L
Sbjct: 375 PTFLVSNDDEVSQFCYVSDDESNGEVLEVGKNNFCALYNL 414
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 245 GTQDGAI--LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET 302
GT +G I L FN+ + S + + L S S D +++W+++
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVS----EITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 303 LQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVW 338
+TL H + V + D+ +LS SLD TI++W
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 63/180 (35%), Gaps = 41/180 (22%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
E G N+V Y + + D I
Sbjct: 184 ERGV-------------NYVD-------------------YYPLPDKPYMITASDDLTIK 211
Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL---YSGSMDNSIRVWNLETLQCIQTL 309
W + T +C A+L+GH ++ VS V L SGS D ++++WN T + +TL
Sbjct: 212 IWDYQ-TKSC---VATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 18/186 (9%)
Query: 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFIGVTNF-VKAWNTQTNT 221
GS D +RV++ +G+ V++ + S P++ G + VK WN + N
Sbjct: 73 GSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 222 DLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276
L + + + M V + +G D + W +T F + + +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LTTGQERGVNY 189
Query: 277 VSLVVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF--LLSCSLD 332
V +K Y + S D +I++W+ +T C+ TL H S V + ++S S D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 333 KTIKVW 338
T+K+W
Sbjct: 250 GTLKIW 255
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
+ LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 203 WIFIGVTNFVKA 214
G N++ +
Sbjct: 281 ---TGRKNYIAS 289
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 63/180 (35%), Gaps = 41/180 (22%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
E G N+V Y + + D I
Sbjct: 184 ERGV-------------NYVD-------------------YYPLPDKPYMITASDDLTIK 211
Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL---YSGSMDNSIRVWNLETLQCIQTL 309
W + T +C A+L+GH ++ VS V L SGS D ++++WN T + +TL
Sbjct: 212 IWDYQ-TKSC---VATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 18/186 (9%)
Query: 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFIGVTNF-VKAWNTQTNT 221
GS D +RV++ +G+ V++ + S P++ G + VK WN + N
Sbjct: 73 GSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 222 DLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276
L + + + M V + +G D + W +T F + + +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LTTGQERGVNY 189
Query: 277 VSLVVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF--LLSCSLD 332
V +K Y + S D +I++W+ +T C+ TL H S V + ++S S D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 333 KTIKVW 338
T+K+W
Sbjct: 250 GTLKIW 255
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
+ LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 203 WIFIGVTNFVKA 214
G N++ +
Sbjct: 281 ---TGRKNYIAS 289
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 42/205 (20%)
Query: 145 QLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203
+L GHQK G++ S S L S S D TV +WD IN G + G ++ +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD---------INAGPKEGKIV-DAKA 223
Query: 204 IFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261
IF G + V+ AW+ SL G V D + W T
Sbjct: 224 IFTGHSAVVEDVAWHLLHE---SLFGSVA----------------DDQKLXIWDTRSNTT 264
Query: 262 CFEPAASLKGHSLAVVSLVVGANK---LYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVM 317
+P+ + H+ V L L +GS D ++ +W+L L+ + T H +
Sbjct: 265 S-KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIF 323
Query: 318 SLLCW----DQFLLSCSLDKTIKVW 338
+ W + L S D+ + VW
Sbjct: 324 Q-VHWSPHNETILASSGTDRRLNVW 347
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 18/186 (9%)
Query: 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFIGVTNF-VKAWNTQTNT 221
GS D +RV++ +G+ V++ + S P++ G + VK WN + N
Sbjct: 73 GSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 222 DLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276
L + + + M V + +G D + W +T F + +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNY 189
Query: 277 VSLVVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF--LLSCSLD 332
V +K Y + S D +I++W+ +T C+ TL H S V + ++S S D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 333 KTIKVW 338
T+K+W
Sbjct: 250 GTLKIW 255
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 41/180 (22%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
E G N+V + P+ M +D D I
Sbjct: 184 ERGV-------------NYVDYY------------PLPDKPYMITASD-------DLTIK 211
Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL---YSGSMDNSIRVWNLETLQCIQTL 309
W + T +C A+L+GH ++ VS V L SGS D ++++WN T + +TL
Sbjct: 212 IWDYQ-TKSC---VATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
+ LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGA 250
G N++ + T LSL + VG L+++G ++ A
Sbjct: 281 ---TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGK-LVWSGGKNAA 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 321 CWDQFLLSCSLDKTIKVW-FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379
C D FL + S+D+T+K+W G Y+ H V A C PD LL +
Sbjct: 262 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA---RLLTTDQK 318
Query: 380 NSVRFY 385
+ +R Y
Sbjct: 319 SEIRVY 324
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 18/186 (9%)
Query: 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFIGVTNF-VKAWNTQTNT 221
GS D +RV++ +G+ V++ + S P++ G + VK WN + N
Sbjct: 73 GSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 222 DLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276
L + + + M V + +G D + W +T F + +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNY 189
Query: 277 VSLVVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF--LLSCSLD 332
V +K Y + S D +I++W+ +T C+ TL H S V + ++S S D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 333 KTIKVW 338
T+K+W
Sbjct: 250 GTLKIW 255
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 41/180 (22%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
W + + L EGH+ V + P SG D TV+VW + G
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
E G N+V + P+ M +D D I
Sbjct: 184 ERGV-------------NYVDYY------------PLPDKPYMITASD-------DLTIK 211
Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL---YSGSMDNSIRVWNLETLQCIQTL 309
W + T +C A+L+GH ++ VS V L SGS D ++++WN T + +TL
Sbjct: 212 IWDYQ-TKSC---VATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205
LEGH VS + SGS+D T+++W+ ++ + +N+G E I+ P
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP--- 280
Query: 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGA 250
G N++ + T LSL + VG L+++G ++ A
Sbjct: 281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGK-LVWSGGKNAA 324
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 321 CWDQFLLSCSLDKTIKVW-FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379
C D FL + S+D+T+K+W G Y+ H V A C PD LL +
Sbjct: 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR---LLTTDQK 317
Query: 380 NSVRFY 385
+ +R Y
Sbjct: 318 SEIRVY 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 321 CWDQFLLSCSLDKTIKVW-FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379
C D FL + S+D+T+K+W G Y+ H V A C PD LL +
Sbjct: 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR---LLTTDQK 317
Query: 380 NSVRFY 385
+ +R Y
Sbjct: 318 SEIRVY 323
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMDNS 294
VG + + GA+ W+ + H ++ VS++ + SGS D
Sbjct: 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC 150
Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLC---WDQFLLSCSLDKTIKVW 338
I+VW+L + + H + V + D LSCS D I +W
Sbjct: 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180
H +VS +++ S + SGSKD ++VWD A
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 72/194 (37%), Gaps = 44/194 (22%)
Query: 111 DILCRNWV---QGNCMYGEKC-KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY 166
D+LC + GN C K W + G + + E H+ V+ + D
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFA 256
Query: 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226
SGS D T R++D + + EV E I G ++ D SLS
Sbjct: 257 SGSDDATCRLYDLRADR---------EVAIYSKES--IIFGA----------SSVDFSLS 295
Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-- 284
G LLFAG D I W + + L GH V +L V +
Sbjct: 296 GR------------LLFAGYNDYTINVWDVLKGSR----VSILFGHENRVSTLRVSPDGT 339
Query: 285 KLYSGSMDNSIRVW 298
SGS D+++RVW
Sbjct: 340 AFCSGSWDHTLRVW 353
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 268 SLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
S GH V+ L + N SG D VW++ + QC+Q H S V S+
Sbjct: 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 44/217 (20%)
Query: 145 QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDC-ASGQCAGVINLGGEVGCMISEGP 202
+L GHQK G++ P+ + L S S D T+ +WD A+ + VI+
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---------- 225
Query: 203 WIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
IF G T V+ AW+ SL G V D ++ W
Sbjct: 226 -IFTGHTAVVEDVAWHLLHE---SLFGSVAD----------------DQKLMIWDTR-NN 264
Query: 261 NCFEPAASLKGHSLAVVSLVVGANK---LYSGSMDNSIRVWNLETLQC-IQTLTEHTSVV 316
N +P+ ++ H+ V L L +GS D ++ +W+L L+ + + H +
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324
Query: 317 MSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVT 349
+ W + L S D+ + VW + G + T
Sbjct: 325 FQ-VQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 44/217 (20%)
Query: 145 QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDC-ASGQCAGVINLGGEVGCMISEGP 202
+L GHQK G++ P+ + L S S D T+ +WD A+ + VI+
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---------- 229
Query: 203 WIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
IF G T V+ AW+ SL G V D ++ W
Sbjct: 230 -IFTGHTAVVEDVAWHLLHE---SLFGSVAD----------------DQKLMIWDTR-NN 268
Query: 261 NCFEPAASLKGHSLAVVSLVVGANK---LYSGSMDNSIRVWNLETLQC-IQTLTEHTSVV 316
N +P+ ++ H+ V L L +GS D ++ +W+L L+ + + H +
Sbjct: 269 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 328
Query: 317 MSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVT 349
+ W + L S D+ + VW + G + T
Sbjct: 329 FQ-VQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 364
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 21/134 (15%)
Query: 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSG 289
G V A+A+ N + G IL +P G ++ V+ + N L G
Sbjct: 127 GNVLAVALDNSVYLWSASSGDILQ-----LLQMEQP-----GEYISSVAWIKEGNYLAVG 176
Query: 290 SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVT 349
+ +++W+++ + ++ +T H++ V S L W+ ++LS + SG++
Sbjct: 177 TSSAEVQLWDVQQQKRLRNMTSHSARVGS-LSWNSYILSS----------GSRSGHIHHH 225
Query: 350 YTHNEEHGVLALCG 363
EH V L G
Sbjct: 226 DVRVAEHHVATLSG 239
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 23/192 (11%)
Query: 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
G + +H V + L GH + V G+ L SG D V VW A G+
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 275
Query: 185 AGV-----INLGGEVGCMISEGPW----IFIG---VTNFVKAWNTQTNTDLSLSGPVGQV 232
V G V ++ PW + G ++ WN + LS QV
Sbjct: 276 GWVPLQTFTQHQGAVKA-VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 334
Query: 233 ----YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KL 286
++ + G ++ WK+ E LKGH+ V+SL + + +
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE----LKGHTSRVLSLTMSPDGATV 390
Query: 287 YSGSMDNSIRVW 298
S + D ++R+W
Sbjct: 391 ASAAADETLRLW 402
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179
+ +L+GH V +T+ + S + DET+R+W C
Sbjct: 368 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 44/217 (20%)
Query: 145 QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDC-ASGQCAGVINLGGEVGCMISEGP 202
+L GHQK G++ P+ + L S S D T+ +WD A+ + VI+
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---------- 227
Query: 203 WIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
IF G T V+ AW+ SL G V D ++ W
Sbjct: 228 -IFTGHTAVVEDVAWHLLHE---SLFGSVAD----------------DQKLMIWDTR-NN 266
Query: 261 NCFEPAASLKGHSLAVVSLVVGANK---LYSGSMDNSIRVWNLETLQC-IQTLTEHTSVV 316
N +P+ ++ H+ V L L +GS D ++ +W+L L+ + + H +
Sbjct: 267 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 326
Query: 317 MSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVT 349
+ W + L S D+ + VW + G + T
Sbjct: 327 FQ-VQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 362
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 47/205 (22%)
Query: 137 GDGFKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
G + L +E Q+ V G S K + D T+RVWD + +C
Sbjct: 236 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC--------- 286
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
V+ W T L QV +A GN + + + DG +
Sbjct: 287 ------------------VQKW-TLDKQQLGNQ----QVGVVATGNGRIISLSLDGTLNF 323
Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
++ E ++ GH+ + +L V N L SGS D I W+ ++ +H+
Sbjct: 324 YELGHD----EVLKTISGHNKGITALTV--NPLISGSYDGRIMEWSSSSMH-----QDHS 372
Query: 314 SVVMSLL-CWDQFLLSCSLDKTIKV 337
++++SL Q S S D T+KV
Sbjct: 373 NLIVSLDNSKAQEYSSISWDDTLKV 397
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 228 PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY 287
P+ QV G DLLF+ ++D + W + N E +L GH+ + S+ V Y
Sbjct: 34 PLTQVKYNKEG-DLLFSCSKDSSASVW---YSLNG-ERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 288 --SGSMDNSIRVWNLETLQCIQT 308
+GS D SI++W++ QC+ T
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVAT 111
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 266 AASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL--LC 321
A L GH L V + L+S S D+S VW + + TL HT + S+ C
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC 84
Query: 322 WDQFLLSCSLDKTIKVW 338
+ ++ ++ S D +IK+W
Sbjct: 85 FTKYCVTGSADYSIKLW 101
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
W +G +L T L+GH + I + + +GS D ++++WD ++GQC
Sbjct: 59 WYSLNGERLGT-LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
+L GH++ ++ + D L+S SKD + VW +G+ G ++
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD 71
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 21/134 (15%)
Query: 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSG 289
G V A+A+ N + G IL +P G ++ V+ + N L G
Sbjct: 116 GNVLAVALDNSVYLWSASSGDILQ-----LLQMEQP-----GEYISSVAWIKEGNYLAVG 165
Query: 290 SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVT 349
+ +++W+++ + ++ +T H++ V S L W+ ++LS + SG++
Sbjct: 166 TSSAEVQLWDVQQQKRLRNMTSHSARVGS-LSWNSYILSS----------GSRSGHIHHH 214
Query: 350 YTHNEEHGVLALCG 363
EH V L G
Sbjct: 215 DVRVAEHHVATLSG 228
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 23/192 (11%)
Query: 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
G + +H V + L GH + V G+ L SG D V VW A G+
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 185 AGV-----INLGGEVGCMISEGPW----IFIG---VTNFVKAWNTQTNTDLSLSGPVGQV 232
V G V ++ PW + G ++ WN + LS QV
Sbjct: 265 GWVPLQTFTQHQGAVKA-VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 323
Query: 233 ----YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KL 286
++ + G ++ WK+ E LKGH+ V+SL + + +
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE----LKGHTSRVLSLTMSPDGATV 379
Query: 287 YSGSMDNSIRVW 298
S + D ++R+W
Sbjct: 380 ASAAADETLRLW 391
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179
+ +L+GH V +T+ + S + DET+R+W C
Sbjct: 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 112 ILCRNWVQGNCMYGEKCKFLHSW 134
++C++W++G C G++C+FLH +
Sbjct: 17 VVCKHWLRGLCKKGDQCEFLHEY 39
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 23/192 (11%)
Query: 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
G + +H V + L GH + V G+ L SG D V VW A G+
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 185 AGV-----INLGGEVGCMISEGPW----IFIG---VTNFVKAWNTQTNTDLSLSGPVGQV 232
V G V ++ PW + G ++ WN + LS QV
Sbjct: 185 GWVPLQTFTQHQGAVKA-VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 243
Query: 233 ----YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KL 286
++ + G ++ WK+ E LKGH+ V+SL + + +
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE----LKGHTSRVLSLTMSPDGATV 299
Query: 287 YSGSMDNSIRVW 298
S + D ++R+W
Sbjct: 300 ASAAADETLRLW 311
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 21/134 (15%)
Query: 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSG 289
G V A+A+ N + G IL +P G ++ V+ + N L G
Sbjct: 36 GNVLAVALDNSVYLWSASSGDILQ-----LLQMEQP-----GEYISSVAWIKEGNYLAVG 85
Query: 290 SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVT 349
+ +++W+++ + ++ +T H++ V S L W+ ++LS + SG++
Sbjct: 86 TSSAEVQLWDVQQQKRLRNMTSHSARVGS-LSWNSYILSS----------GSRSGHIHHH 134
Query: 350 YTHNEEHGVLALCG 363
EH V L G
Sbjct: 135 DVRVAEHHVATLSG 148
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179
+ +L+GH V +T+ + S + DET+R+W C
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 226 SGPVGQVYAMAVGNDLLFAGTQDGAILAWKF---NVTTNCFEPAASLKGHSLAVVSLV-- 280
+ PV + ++++ +G++D ++ W+ + EP +L+GH+ V +
Sbjct: 81 TAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 281 -VGANKLYSGSMDNSIRVWNLETLQCIQTL 309
N L S DN I VW++ T + TL
Sbjct: 141 PTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 38/203 (18%)
Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205
L+GH V + + + S S+D + VW+ + Q I L PW+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---------HCPWVM 112
Query: 206 I-------------GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG-----------NDL 241
G+ + +N + D + PV +V G
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 242 LFAGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG---ANKLYSGSMDNSIRV 297
L G+ D + W + GH+ V+SL + AN SGS D ++R+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 298 WNLE-TLQCIQTLTEHTSVVMSL 319
W+L T + ++T H + S+
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSV 255
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 113 LCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151
LCR + + G C YGEKC+F H GF L L H K
Sbjct: 8 LCRPFEESGTCKYGEKCQFAH------GFHELRSLTRHPK 41
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 239 NDLLFAGTQDGAILAWKF---NVTTNCFEPAASLKGHSLAVVSLV---VGANKLYSGSMD 292
++++ +G++D ++ W+ + EP +L+GH+ V + N L S D
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 293 NSIRVWNLETLQCIQTL 309
N I VW++ T + TL
Sbjct: 154 NVILVWDVGTGAAVLTL 170
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 112 ILCRNWVQGNCMYGEKCKFLHSWTV 136
++C++W++G C G++C+FLH + +
Sbjct: 11 VVCKHWLRGLCKKGDQCEFLHEYDM 35
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 35/168 (20%)
Query: 122 CMYGEKCKFLHS-----------WTVGDG-FKLLTQLEG---------------HQKVVS 154
+GE KF+HS T GDG L ++G H V
Sbjct: 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243
Query: 155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-----GCMISEGPWIFIGVT 209
G+T K+ S S D+T+++W+ A+ + I +G + G + ++ + I
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303
Query: 210 NFVKAWNTQTNT-DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
F+ N + + D G + A++ D LF+ +G I +W
Sbjct: 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 285 KLYSGSMDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338
+L +GS+DNS+ VWN+ + I H ++ + W + ++S D IK W
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 47/205 (22%)
Query: 137 GDGFKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
G + L +E Q+ V G S K + D T+RVWD + +C
Sbjct: 236 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC--------- 286
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
V+ W T L QV +A GN + + + DG +
Sbjct: 287 ------------------VQKW-TLDKQQLGNQ----QVGVVATGNGRIISLSLDGTLNF 323
Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
++ E ++ GH+ + +L V N L SGS D I W+ + +H+
Sbjct: 324 YELGHD----EVLKTISGHNKGITALTV--NPLISGSYDGRIXEWSSSSXH-----QDHS 372
Query: 314 SVVMSLL-CWDQFLLSCSLDKTIKV 337
++++SL Q S S D T+KV
Sbjct: 373 NLIVSLDNSKAQEYSSISWDDTLKV 397
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 274 LAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC---WDQFLLSCS 330
+ +S+ + SG D S++VW+L +++ H+S V + D LSC
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 331 LDKTIKVW 338
D I +W
Sbjct: 202 EDGRILLW 209
>pdb|2X26|A Chain A, Crystal Structure Of The Periplasmic Aliphatic Sulphonate
Binding Protein Ssua From Escherichia Coli
pdb|2X26|B Chain B, Crystal Structure Of The Periplasmic Aliphatic Sulphonate
Binding Protein Ssua From Escherichia Coli
Length = 308
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 203 WI-FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261
W+ F ++A N + DL +G + ++A A G DL++ G + A V N
Sbjct: 36 WVEFPAGPQMLEALNV-GSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAEN 94
Query: 262 C-FEPAASLKGHSLA 275
+ A LKGH +A
Sbjct: 95 SPIKTVADLKGHKVA 109
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 146 LEGHQKVVSGITLPSGSDK-LYSGSKDETVRVWDC--ASG----------------QCAG 186
L+GH++ + ++ D L + S D V++WD ASG + A
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 187 VINLGGEVG-CMISEGPWIF-IGVTNFVKAWNTQTNTDLSLS-GPV------GQVYAMAV 237
+ G G C S+G + +G N ++ WN+ + ++ G V G + ++
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301
Query: 238 GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSI 295
G F G+ +A T E LKGH V V +N +LYSGS D +I
Sbjct: 302 GCSSEFVFVPYGSTIAV---YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358
Query: 296 RVW 298
W
Sbjct: 359 LAW 361
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
+TV G + +T L+GH K V S +LYSGS+D + W
Sbjct: 319 YTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 20/114 (17%)
Query: 286 LYSGSMDNSIRVWNLET-------LQCIQTLTEHTSVVMSLLCWDQ---FLLSCSLDKTI 335
L +GS D+++ +W E + + + H + V + W +L +CS DK++
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV-AWSNDGYYLATCSRDKSV 131
Query: 336 KVWFATDSGN----LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385
+W +SG + V H+++ V + P + +L S D++VR +
Sbjct: 132 WIWETDESGEEYECISVLQEHSQD--VKHVIWHP---SEALLASSSYDDTVRIW 180
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 271 GHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQT---LTEHTSVVMS----LL 320
GH A+ L N L S S D+++R+WN++T + + H V+S LL
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 321 CWDQFLLSCSLDKTIKVW 338
+ ++SC +D ++K+W
Sbjct: 209 --GEKIMSCGMDHSLKLW 224
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQ---FLLSCSLDKTIKVW-FATDSGNLEVTY 350
IR+ N T+QCI+ H + + L + LLS S D +++W TD+ L +
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIF 190
Query: 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
E H L D G+ ++ C D+S++ + + S
Sbjct: 191 GGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS 228
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 100 SNINNRAVIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151
S++ + KT+ LCR + + G C YG KC+F H G L Q H K
Sbjct: 2 SHMTTSSRYKTE-LCRTYSESGRCRYGAKCQFAH------GLGELRQANRHPK 47
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWT 135
N KT++ + +QG C YG +C F+H+ T
Sbjct: 43 NRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATD 342
LY+ D I WNL+T + I+ + + V+ + C D L + D T K A D
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 271 GHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQT---LTEHTSVVMS----LL 320
GH A+ L N L S S D+++R+WN++T + + H V+S LL
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 321 CWDQFLLSCSLDKTIKVW 338
+ ++SC +D ++K+W
Sbjct: 168 --GEKIMSCGMDHSLKLW 183
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQ---FLLSCSLDKTIKVW-FATDSGNLEVTY 350
IR+ N T+QCI+ H + + L + LLS S D +++W TD+ L +
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIF 149
Query: 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
E H L D G+ ++ C D+S++ + + S
Sbjct: 150 GGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS 187
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATD 342
LY+ D I WNL+T + I+ + + V+ + C D L + D T K A D
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATD 342
LY+ D I WNL+T + I+ + + V+ + C D L + D T K A D
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 271 GHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQT---LTEHTSVVMS----LL 320
GH A+ L N L S S D+++R+WN++T + + H V+S LL
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 321 CWDQFLLSCSLDKTIKVW 338
+ ++SC +D ++K+W
Sbjct: 172 --GEKIMSCGMDHSLKLW 187
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQ---FLLSCSLDKTIKVW-FATDSGNLEVTY 350
IR+ N T+QCI+ H + + L + LLS S D +++W TD+ L +
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIF 153
Query: 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
E H L D G+ ++ C D+S++ + + S
Sbjct: 154 GGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS 191
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 271 GHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQT---LTEHTSVVMS----LL 320
GH A+ L N L S S D+++R+WN++T + + H V+S LL
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 321 CWDQFLLSCSLDKTIKVW 338
+ ++SC +D ++K+W
Sbjct: 173 --GEKIMSCGMDHSLKLW 188
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQ---FLLSCSLDKTIKVW-FATDSGNLEVTY 350
IR+ N T+QCI+ H + + L + LLS S D +++W TD+ L +
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIF 154
Query: 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
E H L D G+ ++ C D+S++ + + S
Sbjct: 155 GGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS 192
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 271 GHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQT---LTEHTSVVMS----LL 320
GH A+ L N L S S D+++R+WN++T + + H V+S LL
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 321 CWDQFLLSCSLDKTIKVW 338
+ ++SC +D ++K+W
Sbjct: 172 --GEKIMSCGMDHSLKLW 187
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQ---FLLSCSLDKTIKVW-FATDSGNLEVTY 350
IR+ N T+QCI+ H + + L + LLS S D +++W TD+ L +
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIF 153
Query: 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
E H L D G+ ++ C D+S++ + + S
Sbjct: 154 GGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS 191
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATD 342
LY+ D I WNL+T + I+ + + V+ + C D L + D T K A D
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 274 LAVVSLVVGANKLYSGSMDNSIRVWNLE-TLQCIQTLTE-HTSVVMSLLCWDQ---FLLS 328
L+ + N L +GS N +R W ++ + Q I + HT V+ +CW + +
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLD-VCWSDDGSKVFT 103
Query: 329 CSLDKTIKVW 338
S DKT K+W
Sbjct: 104 ASCDKTAKMW 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,218,127
Number of Sequences: 62578
Number of extensions: 435571
Number of successful extensions: 1572
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 358
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)