Query 016224
Match_columns 393
No_of_seqs 800 out of 2360
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.5E-42 3.3E-47 297.8 25.2 279 104-392 110-443 (480)
2 KOG0281 Beta-TrCP (transducin 100.0 2.1E-42 4.5E-47 293.7 15.1 292 88-391 176-480 (499)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-40 1.3E-44 285.1 21.7 269 108-386 174-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 3.3E-39 7.1E-44 277.3 24.3 276 103-386 151-479 (480)
5 KOG0274 Cdc4 and related F-box 100.0 4.8E-37 1E-41 291.5 31.4 276 107-392 206-486 (537)
6 KOG0286 G-protein beta subunit 100.0 8.3E-35 1.8E-39 242.3 30.7 270 107-386 53-343 (343)
7 KOG0279 G protein beta subunit 100.0 1.7E-34 3.7E-39 239.0 30.7 275 106-389 12-314 (315)
8 KOG0273 Beta-transducin family 100.0 8.5E-35 1.8E-39 256.3 29.2 268 109-388 235-523 (524)
9 KOG0295 WD40 repeat-containing 100.0 2E-34 4.2E-39 246.6 24.3 273 105-387 104-405 (406)
10 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-35 1.4E-39 253.8 17.9 248 85-339 195-458 (459)
11 KOG0315 G-protein beta subunit 100.0 1.1E-32 2.3E-37 224.8 28.5 262 121-391 12-291 (311)
12 KOG0286 G-protein beta subunit 100.0 9.9E-33 2.2E-37 229.9 28.5 244 141-391 46-306 (343)
13 KOG0284 Polyadenylation factor 100.0 1.8E-34 3.8E-39 250.1 16.0 271 108-387 95-379 (464)
14 KOG0265 U5 snRNP-specific prot 100.0 3.8E-32 8.1E-37 227.3 27.4 280 99-387 37-337 (338)
15 KOG0263 Transcription initiati 100.0 8.2E-33 1.8E-37 258.1 25.0 233 111-389 380-650 (707)
16 KOG0281 Beta-TrCP (transducin 100.0 4.7E-34 1E-38 243.0 13.0 232 149-390 196-430 (499)
17 KOG0273 Beta-transducin family 100.0 1.3E-31 2.7E-36 236.4 26.4 276 107-392 176-486 (524)
18 cd00200 WD40 WD40 domain, foun 100.0 3.2E-30 6.8E-35 230.5 35.6 270 107-386 7-289 (289)
19 KOG0285 Pleiotropic regulator 100.0 2.3E-31 4.9E-36 227.4 25.7 274 106-388 148-439 (460)
20 KOG0316 Conserved WD40 repeat- 100.0 8.8E-32 1.9E-36 217.9 21.4 245 141-392 8-261 (307)
21 KOG0282 mRNA splicing factor [ 100.0 1.2E-32 2.6E-37 243.6 17.8 278 104-386 209-503 (503)
22 KOG0318 WD40 repeat stress pro 100.0 3.7E-30 8E-35 229.9 32.5 321 61-392 11-354 (603)
23 KOG0318 WD40 repeat stress pro 100.0 4.9E-30 1.1E-34 229.2 33.1 280 105-389 186-561 (603)
24 KOG0296 Angio-associated migra 100.0 1.2E-30 2.7E-35 223.4 27.8 277 105-388 60-398 (399)
25 KOG0315 G-protein beta subunit 100.0 1.8E-30 4E-35 211.8 26.2 247 109-355 40-302 (311)
26 KOG0279 G protein beta subunit 100.0 3.5E-30 7.6E-35 213.5 27.2 240 141-392 6-266 (315)
27 KOG0276 Vesicle coat complex C 100.0 3.4E-31 7.4E-36 240.9 23.1 242 143-392 6-261 (794)
28 KOG0645 WD40 repeat protein [G 100.0 2.1E-29 4.5E-34 208.1 30.8 277 105-388 10-311 (312)
29 KOG0285 Pleiotropic regulator 100.0 5E-31 1.1E-35 225.3 21.2 241 140-391 141-392 (460)
30 KOG0266 WD40 repeat-containing 100.0 1.3E-29 2.8E-34 241.2 30.4 275 107-388 157-454 (456)
31 KOG0291 WD40-repeat-containing 100.0 2.8E-29 6E-34 232.9 31.2 274 110-392 308-616 (893)
32 KOG0291 WD40-repeat-containing 100.0 4.3E-29 9.4E-34 231.6 32.4 279 105-392 346-713 (893)
33 KOG0319 WD40-repeat-containing 100.0 3.1E-30 6.7E-35 238.8 24.6 269 109-388 323-619 (775)
34 KOG0293 WD40 repeat-containing 100.0 4.4E-30 9.6E-35 223.2 23.5 276 105-389 220-514 (519)
35 KOG0276 Vesicle coat complex C 100.0 2E-29 4.4E-34 229.4 25.8 266 108-383 12-294 (794)
36 PLN00181 protein SPA1-RELATED; 100.0 4.3E-28 9.4E-33 247.0 38.6 274 107-387 481-792 (793)
37 KOG0316 Conserved WD40 repeat- 100.0 5E-29 1.1E-33 201.9 25.1 271 107-387 15-298 (307)
38 KOG0277 Peroxisomal targeting 100.0 7.7E-30 1.7E-34 208.8 17.5 235 109-387 60-308 (311)
39 KOG0305 Anaphase promoting com 100.0 3E-28 6.6E-33 223.7 29.0 267 112-389 180-462 (484)
40 KOG0313 Microtubule binding pr 100.0 1.9E-28 4E-33 211.1 25.4 274 103-389 99-419 (423)
41 KOG0284 Polyadenylation factor 100.0 3.1E-30 6.6E-35 223.9 13.6 232 149-388 95-337 (464)
42 KOG0263 Transcription initiati 100.0 5.1E-29 1.1E-33 232.8 22.3 197 105-343 447-651 (707)
43 KOG0319 WD40-repeat-containing 100.0 5.1E-28 1.1E-32 224.2 26.6 268 119-392 293-581 (775)
44 KOG0274 Cdc4 and related F-box 100.0 5.6E-28 1.2E-32 229.8 26.5 239 105-349 245-490 (537)
45 KOG0265 U5 snRNP-specific prot 100.0 6.8E-28 1.5E-32 201.8 23.1 242 141-390 38-298 (338)
46 KOG0268 Sof1-like rRNA process 100.0 5.4E-29 1.2E-33 213.2 16.6 270 106-388 63-345 (433)
47 KOG0643 Translation initiation 100.0 1.1E-27 2.4E-32 197.5 21.9 273 106-388 7-317 (327)
48 KOG0266 WD40 repeat-containing 100.0 4.8E-27 1E-31 223.6 29.4 244 143-392 151-413 (456)
49 KOG0292 Vesicle coat complex C 100.0 1.4E-27 3E-32 225.1 25.1 271 111-388 11-321 (1202)
50 KOG0295 WD40 repeat-containing 100.0 5.7E-28 1.2E-32 207.1 19.1 230 107-340 148-405 (406)
51 PTZ00420 coronin; Provisional 100.0 1.6E-26 3.4E-31 220.7 31.1 229 125-391 50-296 (568)
52 PLN00181 protein SPA1-RELATED; 100.0 1.8E-26 3.9E-31 235.2 33.7 251 128-389 457-739 (793)
53 KOG1407 WD40 repeat protein [F 100.0 1.9E-26 4.1E-31 189.7 26.8 272 107-389 18-312 (313)
54 PTZ00421 coronin; Provisional 100.0 2.2E-26 4.8E-31 218.5 30.9 211 145-392 70-294 (493)
55 KOG0645 WD40 repeat protein [G 100.0 5.9E-26 1.3E-30 187.7 28.2 237 141-389 5-262 (312)
56 cd00200 WD40 WD40 domain, foun 100.0 4E-26 8.6E-31 203.9 29.3 240 143-391 2-252 (289)
57 KOG0306 WD40-repeat-containing 100.0 7.2E-26 1.5E-30 210.3 26.0 273 105-389 369-665 (888)
58 KOG0282 mRNA splicing factor [ 100.0 1.5E-27 3.3E-32 211.4 14.2 245 141-392 205-466 (503)
59 KOG0640 mRNA cleavage stimulat 99.9 3.7E-26 8.1E-31 192.2 20.9 276 105-388 108-426 (430)
60 KOG0275 Conserved WD40 repeat- 99.9 4.6E-27 1E-31 198.8 14.9 240 108-392 212-471 (508)
61 KOG0283 WD40 repeat-containing 99.9 3.6E-26 7.9E-31 215.5 22.4 237 107-390 265-578 (712)
62 KOG0296 Angio-associated migra 99.9 1.7E-25 3.7E-30 192.1 23.3 235 101-341 98-398 (399)
63 KOG0278 Serine/threonine kinas 99.9 9.5E-27 2.1E-31 190.3 14.8 275 105-390 10-299 (334)
64 KOG0292 Vesicle coat complex C 99.9 5.4E-26 1.2E-30 214.4 20.4 240 144-390 3-282 (1202)
65 KOG1446 Histone H3 (Lys4) meth 99.9 4.2E-24 9E-29 180.7 29.7 245 141-392 5-266 (311)
66 KOG0301 Phospholipase A2-activ 99.9 4E-25 8.6E-30 203.9 25.3 266 107-388 12-288 (745)
67 KOG0647 mRNA export protein (c 99.9 6.6E-25 1.4E-29 184.1 24.3 259 108-368 26-306 (347)
68 KOG0289 mRNA splicing factor [ 99.9 7.8E-25 1.7E-29 191.8 25.3 267 111-387 221-505 (506)
69 KOG0306 WD40-repeat-containing 99.9 2.4E-25 5.2E-30 206.9 22.7 233 105-342 408-665 (888)
70 KOG1332 Vesicle coat complex C 99.9 2.3E-25 5.1E-30 181.6 19.9 234 115-387 19-285 (299)
71 KOG0308 Conserved WD40 repeat- 99.9 7.1E-26 1.5E-30 207.3 17.2 227 122-390 40-287 (735)
72 KOG0313 Microtubule binding pr 99.9 4.6E-25 1E-29 190.3 21.0 254 83-340 121-417 (423)
73 KOG0288 WD40 repeat protein Ti 99.9 7E-26 1.5E-30 197.2 15.9 281 98-386 163-459 (459)
74 KOG0641 WD40 repeat protein [G 99.9 6.7E-23 1.5E-27 165.6 31.7 278 108-388 31-349 (350)
75 KOG0299 U3 snoRNP-associated p 99.9 2.1E-24 4.5E-29 190.5 24.7 274 105-385 138-453 (479)
76 KOG0277 Peroxisomal targeting 99.9 5.9E-25 1.3E-29 180.3 18.9 229 154-390 12-267 (311)
77 KOG1036 Mitotic spindle checkp 99.9 8.1E-24 1.8E-28 178.2 26.2 260 109-378 13-294 (323)
78 KOG0264 Nucleosome remodeling 99.9 6.5E-25 1.4E-29 193.6 20.3 251 104-388 119-404 (422)
79 KOG0300 WD40 repeat-containing 99.9 2.2E-24 4.7E-29 182.2 20.9 280 105-391 144-479 (481)
80 KOG0310 Conserved WD40 repeat- 99.9 5.7E-24 1.2E-28 189.1 23.6 265 110-386 27-307 (487)
81 KOG0293 WD40 repeat-containing 99.9 9.5E-25 2.1E-29 190.1 18.1 232 105-342 265-514 (519)
82 PTZ00421 coronin; Provisional 99.9 4E-23 8.6E-28 196.4 29.9 219 106-366 72-314 (493)
83 KOG0288 WD40 repeat protein Ti 99.9 5.2E-25 1.1E-29 191.8 15.5 248 90-338 200-458 (459)
84 KOG0294 WD40 repeat-containing 99.9 2.1E-23 4.5E-28 176.2 23.3 240 105-390 39-283 (362)
85 KOG1036 Mitotic spindle checkp 99.9 4.7E-23 1E-27 173.6 24.6 235 149-391 12-265 (323)
86 PTZ00420 coronin; Provisional 99.9 5.5E-23 1.2E-27 196.5 28.4 220 105-367 70-318 (568)
87 KOG1407 WD40 repeat protein [F 99.9 1.2E-23 2.6E-28 173.2 20.1 239 144-392 14-265 (313)
88 KOG0275 Conserved WD40 repeat- 99.9 5.9E-25 1.3E-29 186.1 12.8 207 148-389 211-424 (508)
89 KOG0299 U3 snoRNP-associated p 99.9 1.7E-23 3.6E-28 184.8 22.2 240 143-390 135-412 (479)
90 KOG0283 WD40 repeat-containing 99.9 5.4E-24 1.2E-28 200.9 20.0 241 142-390 258-534 (712)
91 KOG0647 mRNA export protein (c 99.9 6.7E-23 1.4E-27 172.2 23.4 259 66-328 27-310 (347)
92 KOG0301 Phospholipase A2-activ 99.9 2.5E-23 5.5E-28 192.0 22.3 235 140-389 4-250 (745)
93 KOG1408 WD40 repeat protein [F 99.9 6.6E-23 1.4E-27 189.8 24.5 271 111-389 326-714 (1080)
94 KOG0640 mRNA cleavage stimulat 99.9 3.9E-24 8.4E-29 180.1 14.1 221 143-392 105-339 (430)
95 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 179.8 23.8 257 129-391 18-310 (476)
96 KOG1539 WD repeat protein [Gen 99.9 9.3E-22 2E-26 185.2 30.7 277 112-392 162-610 (910)
97 KOG0310 Conserved WD40 repeat- 99.9 5.7E-23 1.2E-27 182.8 20.4 232 150-392 26-272 (487)
98 KOG0973 Histone transcription 99.9 8.5E-23 1.8E-27 197.6 22.9 257 108-391 12-358 (942)
99 KOG0278 Serine/threonine kinas 99.9 3.7E-24 7.9E-29 175.2 11.5 234 105-345 55-301 (334)
100 KOG2048 WD40 repeat protein [G 99.9 2E-21 4.3E-26 179.2 29.2 278 106-389 22-320 (691)
101 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-20 2.9E-25 159.6 31.4 270 109-389 14-304 (311)
102 KOG0300 WD40 repeat-containing 99.9 2.6E-22 5.6E-27 169.7 20.3 256 120-391 125-431 (481)
103 KOG0302 Ribosome Assembly prot 99.9 2E-22 4.3E-27 174.0 19.9 224 124-386 170-436 (440)
104 KOG4283 Transcription-coupled 99.9 8.8E-22 1.9E-26 165.0 23.1 284 99-387 33-364 (397)
105 KOG0270 WD40 repeat-containing 99.9 9.5E-23 2.1E-27 179.4 18.0 245 103-390 163-451 (463)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-20 3.3E-25 170.3 33.2 260 121-392 3-283 (300)
107 KOG0772 Uncharacterized conser 99.9 6.8E-22 1.5E-26 176.9 23.4 277 107-389 165-488 (641)
108 KOG2106 Uncharacterized conser 99.9 2.3E-20 5E-25 166.8 30.4 265 107-386 244-519 (626)
109 KOG0772 Uncharacterized conser 99.9 3.5E-22 7.6E-27 178.8 18.6 248 142-392 159-449 (641)
110 KOG1408 WD40 repeat protein [F 99.9 3.4E-21 7.4E-26 178.5 24.3 274 111-392 262-675 (1080)
111 KOG0289 mRNA splicing factor [ 99.9 5.1E-21 1.1E-25 168.0 24.0 233 103-340 255-505 (506)
112 KOG0308 Conserved WD40 repeat- 99.9 6E-22 1.3E-26 181.8 17.9 230 121-388 87-327 (735)
113 KOG0294 WD40 repeat-containing 99.9 5.7E-21 1.2E-25 161.5 21.6 204 95-303 69-283 (362)
114 KOG0643 Translation initiation 99.9 1.8E-20 3.8E-25 155.2 24.0 227 145-377 5-250 (327)
115 KOG0646 WD40 repeat protein [G 99.9 1.2E-21 2.7E-26 173.4 18.1 234 106-340 78-349 (476)
116 KOG0305 Anaphase promoting com 99.9 2.9E-21 6.4E-26 177.9 21.2 227 109-343 217-463 (484)
117 KOG1273 WD40 repeat protein [G 99.9 9E-21 2E-25 160.3 22.2 268 112-389 26-323 (405)
118 KOG2445 Nuclear pore complex c 99.9 2.8E-20 6.1E-25 156.9 25.0 252 104-387 8-317 (361)
119 KOG0269 WD40 repeat-containing 99.9 3.3E-22 7.2E-27 186.8 14.7 227 119-388 100-340 (839)
120 KOG0264 Nucleosome remodeling 99.9 1.5E-21 3.3E-26 172.4 18.0 211 148-389 122-348 (422)
121 KOG2055 WD40 repeat protein [G 99.9 6.9E-21 1.5E-25 168.4 22.0 273 109-388 213-512 (514)
122 KOG0641 WD40 repeat protein [G 99.9 1E-19 2.2E-24 147.3 26.4 240 140-389 23-304 (350)
123 KOG1539 WD repeat protein [Gen 99.9 2.7E-19 5.8E-24 168.8 31.4 270 107-387 200-647 (910)
124 KOG1274 WD40 repeat protein [G 99.9 4.7E-20 1E-24 175.6 25.6 236 147-389 10-263 (933)
125 KOG4283 Transcription-coupled 99.9 3.1E-20 6.7E-25 155.7 21.2 237 147-388 40-334 (397)
126 KOG0321 WD40 repeat-containing 99.9 2.3E-20 5E-25 171.1 22.0 265 122-390 67-393 (720)
127 KOG4328 WD40 protein [Function 99.9 3.8E-20 8.3E-25 163.6 22.6 280 105-388 182-495 (498)
128 KOG0639 Transducin-like enhanc 99.9 2E-20 4.4E-25 167.1 20.1 266 110-387 419-703 (705)
129 KOG0268 Sof1-like rRNA process 99.9 1.6E-21 3.4E-26 167.7 12.0 237 141-390 57-304 (433)
130 KOG0267 Microtubule severing p 99.9 1.5E-21 3.2E-26 181.2 9.4 227 106-379 25-259 (825)
131 KOG1332 Vesicle coat complex C 99.9 9.2E-21 2E-25 154.9 12.8 205 146-388 7-241 (299)
132 KOG1188 WD40 repeat protein [G 99.8 9.6E-20 2.1E-24 155.7 18.6 262 121-388 42-346 (376)
133 KOG0302 Ribosome Assembly prot 99.8 7.5E-20 1.6E-24 158.2 18.0 217 145-388 146-378 (440)
134 KOG2048 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 161.0 26.9 235 149-390 24-277 (691)
135 KOG0650 WD40 repeat nucleolar 99.8 2.3E-19 4.9E-24 163.6 21.5 242 141-385 391-732 (733)
136 KOG0267 Microtubule severing p 99.8 2E-21 4.3E-26 180.4 8.1 212 128-392 13-230 (825)
137 KOG2096 WD40 repeat protein [G 99.8 1.4E-19 3.1E-24 153.3 18.5 206 144-388 80-308 (420)
138 KOG0269 WD40 repeat-containing 99.8 9.8E-20 2.1E-24 170.4 17.9 229 152-388 41-296 (839)
139 KOG2106 Uncharacterized conser 99.8 2.3E-18 5E-23 154.1 25.5 272 107-388 285-626 (626)
140 KOG1274 WD40 repeat protein [G 99.8 4.3E-18 9.4E-23 162.4 28.6 255 106-368 10-283 (933)
141 KOG1034 Transcriptional repres 99.8 3.4E-19 7.4E-24 151.6 18.1 244 107-388 87-383 (385)
142 KOG0973 Histone transcription 99.8 9.1E-19 2E-23 170.0 23.3 241 99-343 59-357 (942)
143 KOG0639 Transducin-like enhanc 99.8 1.2E-19 2.5E-24 162.3 15.8 231 148-390 417-665 (705)
144 KOG0307 Vesicle coat complex C 99.8 3.3E-20 7.2E-25 180.6 12.2 238 110-390 65-329 (1049)
145 KOG0303 Actin-binding protein 99.8 7.8E-19 1.7E-23 152.8 18.0 209 145-390 76-296 (472)
146 KOG0321 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 160.3 19.7 238 103-343 94-393 (720)
147 KOG2919 Guanine nucleotide-bin 99.8 5.3E-18 1.1E-22 144.1 21.8 260 111-379 51-361 (406)
148 KOG1063 RNA polymerase II elon 99.8 2.2E-17 4.8E-22 153.1 26.2 282 106-390 188-650 (764)
149 KOG4378 Nuclear protein COP1 [ 99.8 3.4E-18 7.3E-23 152.8 19.9 259 121-390 4-282 (673)
150 KOG0270 WD40 repeat-containing 99.8 7.2E-19 1.6E-23 155.1 15.0 201 105-346 239-454 (463)
151 KOG4328 WD40 protein [Function 99.8 2.3E-18 4.9E-23 152.5 17.3 210 141-388 177-399 (498)
152 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.6E-16 3.6E-21 143.8 30.4 233 112-351 33-289 (300)
153 KOG1445 Tumor-specific antigen 99.8 1.4E-17 3.1E-22 152.9 22.9 158 230-390 628-800 (1012)
154 KOG2096 WD40 repeat protein [G 99.8 7.7E-17 1.7E-21 136.9 23.8 274 105-386 82-400 (420)
155 KOG0322 G-protein beta subunit 99.8 6.1E-18 1.3E-22 140.0 16.1 274 107-387 12-322 (323)
156 KOG2110 Uncharacterized conser 99.8 2.3E-16 5E-21 136.6 25.9 233 149-390 4-250 (391)
157 KOG2445 Nuclear pore complex c 99.8 5.1E-17 1.1E-21 137.3 20.6 209 147-389 10-257 (361)
158 KOG1063 RNA polymerase II elon 99.8 7.3E-17 1.6E-21 149.7 23.2 266 116-387 21-345 (764)
159 KOG1587 Cytoplasmic dynein int 99.8 1.4E-16 2.9E-21 151.2 25.4 256 129-389 222-517 (555)
160 KOG1517 Guanine nucleotide bin 99.8 3.9E-17 8.4E-22 157.9 21.6 264 121-391 1078-1384(1387)
161 KOG1538 Uncharacterized conser 99.8 4.5E-17 9.8E-22 150.4 20.5 267 111-389 14-294 (1081)
162 KOG1007 WD repeat protein TSSC 99.8 1E-16 2.2E-21 134.4 19.3 208 130-341 94-361 (370)
163 KOG1273 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 137.5 17.3 246 141-392 16-284 (405)
164 KOG0290 Conserved WD40 repeat- 99.8 8.1E-17 1.8E-21 135.1 18.1 240 107-384 94-361 (364)
165 KOG0649 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 124.5 23.7 265 112-386 13-314 (325)
166 KOG1445 Tumor-specific antigen 99.7 5.1E-17 1.1E-21 149.3 16.6 111 276-391 630-753 (1012)
167 KOG2055 WD40 repeat protein [G 99.7 3E-16 6.4E-21 139.4 20.7 236 150-393 213-472 (514)
168 KOG4378 Nuclear protein COP1 [ 99.7 1.3E-16 2.9E-21 142.7 17.7 204 121-367 93-305 (673)
169 KOG0642 Cell-cycle nuclear pro 99.7 5.1E-17 1.1E-21 147.6 15.1 243 110-389 295-562 (577)
170 KOG1007 WD repeat protein TSSC 99.7 1E-15 2.2E-20 128.5 21.3 256 127-389 38-362 (370)
171 KOG2919 Guanine nucleotide-bin 99.7 3.5E-16 7.5E-21 133.2 18.5 235 152-389 51-328 (406)
172 KOG0307 Vesicle coat complex C 99.7 3.4E-17 7.4E-22 159.9 12.8 229 126-393 36-289 (1049)
173 COG2319 FOG: WD40 repeat [Gene 99.7 9.6E-14 2.1E-18 130.7 35.7 278 105-390 61-361 (466)
174 KOG1034 Transcriptional repres 99.7 2.2E-16 4.9E-21 134.6 15.5 242 146-390 34-339 (385)
175 COG2319 FOG: WD40 repeat [Gene 99.7 1.6E-13 3.5E-18 129.2 35.5 276 103-389 149-443 (466)
176 KOG0650 WD40 repeat nucleolar 99.7 1.5E-15 3.3E-20 138.9 18.9 229 105-338 396-732 (733)
177 KOG4227 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 127.1 22.3 279 103-387 50-386 (609)
178 KOG0644 Uncharacterized conser 99.7 1E-16 2.3E-21 151.4 9.9 269 105-389 186-469 (1113)
179 PRK11028 6-phosphogluconolacto 99.7 3.2E-13 6.9E-18 124.3 31.7 260 124-388 7-304 (330)
180 KOG1009 Chromatin assembly com 99.7 2.5E-14 5.4E-19 125.4 21.4 256 108-392 12-376 (434)
181 KOG1523 Actin-related protein 99.7 2.9E-14 6.2E-19 121.5 20.9 221 109-366 10-260 (361)
182 KOG0649 WD40 repeat protein [G 99.7 5.2E-14 1.1E-18 115.6 21.5 182 111-298 116-313 (325)
183 KOG1240 Protein kinase contain 99.7 4.8E-14 1E-18 138.8 24.4 255 134-392 1034-1338(1431)
184 KOG0290 Conserved WD40 repeat- 99.6 1.7E-14 3.6E-19 121.4 17.9 244 111-390 46-320 (364)
185 KOG2111 Uncharacterized conser 99.6 1.2E-13 2.6E-18 117.7 23.2 230 152-389 7-257 (346)
186 KOG2110 Uncharacterized conser 99.6 1.9E-12 4.1E-17 112.6 30.6 224 111-342 7-249 (391)
187 KOG1272 WD40-repeat-containing 99.6 1.4E-15 2.9E-20 135.4 11.4 223 151-386 130-360 (545)
188 KOG0303 Actin-binding protein 99.6 5.9E-15 1.3E-19 128.8 15.1 162 224-390 76-251 (472)
189 KOG2111 Uncharacterized conser 99.6 1.3E-12 2.8E-17 111.5 27.7 230 111-343 7-258 (346)
190 KOG1963 WD40 repeat protein [G 99.6 3.7E-13 8E-18 128.7 27.3 282 104-389 200-539 (792)
191 KOG1188 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 124.0 16.1 180 208-391 48-245 (376)
192 KOG1517 Guanine nucleotide bin 99.6 3.4E-14 7.3E-19 137.9 18.7 232 152-390 1066-1335(1387)
193 KOG1963 WD40 repeat protein [G 99.6 6.8E-13 1.5E-17 127.0 26.7 269 117-390 24-377 (792)
194 KOG1587 Cytoplasmic dynein int 99.6 1.7E-13 3.7E-18 130.3 22.3 231 108-342 241-517 (555)
195 KOG1240 Protein kinase contain 99.6 3.7E-13 8E-18 132.7 25.0 233 107-343 1046-1336(1431)
196 KOG1310 WD40 repeat protein [G 99.6 2.2E-14 4.8E-19 130.2 13.7 165 141-341 41-231 (758)
197 PRK01742 tolB translocation pr 99.6 2.6E-13 5.5E-18 129.1 21.6 228 128-366 183-426 (429)
198 KOG4227 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 120.0 18.0 241 144-389 50-323 (609)
199 KOG1524 WD40 repeat-containing 99.6 6E-14 1.3E-18 127.1 15.9 202 120-384 76-282 (737)
200 KOG0644 Uncharacterized conser 99.6 4.1E-15 8.9E-20 140.8 6.8 238 141-390 181-428 (1113)
201 KOG1334 WD40 repeat protein [G 99.5 7.4E-14 1.6E-18 125.2 12.8 278 106-388 139-466 (559)
202 KOG1272 WD40-repeat-containing 99.5 4.7E-14 1E-18 125.7 11.0 256 113-380 133-401 (545)
203 KOG0322 G-protein beta subunit 99.5 1.2E-13 2.7E-18 114.7 12.7 232 105-340 52-322 (323)
204 KOG0974 WD-repeat protein WDR6 99.5 5.7E-13 1.2E-17 129.6 19.2 266 109-389 7-289 (967)
205 KOG0642 Cell-cycle nuclear pro 99.5 8.2E-14 1.8E-18 127.0 12.6 205 105-314 340-574 (577)
206 KOG1334 WD40 repeat protein [G 99.5 1.1E-13 2.4E-18 124.1 13.1 249 141-392 133-428 (559)
207 KOG0771 Prolactin regulatory e 99.5 2E-13 4.3E-18 120.5 14.6 192 113-342 148-355 (398)
208 KOG2321 WD40 repeat protein [G 99.5 2E-12 4.3E-17 118.3 21.0 235 148-389 49-344 (703)
209 TIGR03300 assembly_YfgL outer 99.5 4.2E-11 9.2E-16 112.3 30.5 265 117-392 63-342 (377)
210 KOG1538 Uncharacterized conser 99.5 1.3E-12 2.8E-17 121.5 17.6 229 104-341 48-293 (1081)
211 PRK11028 6-phosphogluconolacto 99.5 8.4E-11 1.8E-15 108.2 28.5 229 111-341 36-304 (330)
212 KOG1009 Chromatin assembly com 99.5 4.4E-13 9.6E-18 117.7 12.0 165 150-342 13-196 (434)
213 KOG0771 Prolactin regulatory e 99.5 1.3E-12 2.9E-17 115.3 14.7 189 154-388 148-354 (398)
214 TIGR03300 assembly_YfgL outer 99.5 1E-10 2.3E-15 109.7 28.5 253 118-385 104-376 (377)
215 PF02239 Cytochrom_D1: Cytochr 99.5 1.2E-10 2.7E-15 107.6 27.8 259 124-392 11-306 (369)
216 KOG3881 Uncharacterized conser 99.4 7.8E-12 1.7E-16 109.5 17.7 211 108-350 104-329 (412)
217 KOG1524 WD40 repeat-containing 99.4 2.6E-12 5.7E-17 116.6 14.5 229 148-392 12-259 (737)
218 KOG2394 WD40 protein DMR-N9 [G 99.4 2E-12 4.3E-17 117.4 11.6 136 107-283 217-384 (636)
219 KOG3881 Uncharacterized conser 99.4 2.9E-11 6.3E-16 106.0 18.0 239 149-392 54-324 (412)
220 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.7E-09 7.9E-14 95.9 32.2 253 129-392 27-334 (352)
221 KOG2394 WD40 protein DMR-N9 [G 99.4 8.2E-12 1.8E-16 113.5 15.0 183 121-323 187-384 (636)
222 PF02239 Cytochrom_D1: Cytochr 99.4 1.8E-10 3.9E-15 106.5 23.7 271 115-392 42-351 (369)
223 PRK03629 tolB translocation pr 99.3 7.5E-10 1.6E-14 105.3 23.3 225 129-365 179-427 (429)
224 KOG4497 Uncharacterized conser 99.3 4.8E-09 1.1E-13 90.4 24.8 262 111-380 50-424 (447)
225 PRK11138 outer membrane biogen 99.3 6.4E-09 1.4E-13 98.1 28.3 257 117-388 118-394 (394)
226 KOG1310 WD40 repeat protein [G 99.3 1.7E-11 3.6E-16 111.8 9.5 158 224-387 45-230 (758)
227 PRK11138 outer membrane biogen 99.3 8.5E-09 1.8E-13 97.3 28.2 264 118-392 68-357 (394)
228 KOG4547 WD40 repeat-containing 99.3 2E-09 4.4E-14 99.4 22.3 178 159-342 2-221 (541)
229 PRK04922 tolB translocation pr 99.2 1.6E-09 3.4E-14 103.4 22.2 206 129-341 184-411 (433)
230 KOG1409 Uncharacterized conser 99.2 3.7E-10 8.1E-15 97.6 15.7 191 109-302 68-271 (404)
231 PF13360 PQQ_2: PQQ-like domai 99.2 1.2E-08 2.7E-13 89.2 25.2 214 171-392 2-234 (238)
232 PF13360 PQQ_2: PQQ-like domai 99.2 1.4E-08 3E-13 88.8 25.2 216 127-346 1-235 (238)
233 PRK01742 tolB translocation pr 99.2 8.7E-10 1.9E-14 105.0 18.6 206 107-323 201-425 (429)
234 KOG1523 Actin-related protein 99.2 8.5E-10 1.8E-14 94.6 16.3 206 146-389 6-237 (361)
235 KOG0974 WD-repeat protein WDR6 99.2 5.8E-10 1.3E-14 109.0 17.3 189 150-342 87-289 (967)
236 PRK02889 tolB translocation pr 99.2 6.1E-09 1.3E-13 99.1 23.4 207 129-340 176-402 (427)
237 KOG2321 WD40 repeat protein [G 99.2 6.6E-10 1.4E-14 102.1 15.5 192 121-344 147-346 (703)
238 KOG1064 RAVE (regulator of V-A 99.2 4.3E-10 9.3E-15 115.3 14.7 211 110-334 2209-2439(2439)
239 KOG1354 Serine/threonine prote 99.2 1.9E-09 4E-14 93.4 16.5 237 149-390 24-361 (433)
240 KOG1064 RAVE (regulator of V-A 99.1 3.7E-10 8E-15 115.7 12.6 192 147-349 2205-2406(2439)
241 PRK03629 tolB translocation pr 99.1 1E-08 2.3E-13 97.5 22.0 209 108-323 197-427 (429)
242 KOG2139 WD40 repeat protein [G 99.1 1.8E-07 3.9E-12 81.9 25.7 270 111-387 100-430 (445)
243 KOG0280 Uncharacterized conser 99.1 6E-09 1.3E-13 88.5 16.2 132 233-368 125-266 (339)
244 PF10282 Lactonase: Lactonase, 99.1 2.7E-06 5.9E-11 78.6 35.1 266 123-392 3-328 (345)
245 KOG4190 Uncharacterized conser 99.1 4E-10 8.6E-15 103.2 9.2 271 105-384 731-1032(1034)
246 KOG1409 Uncharacterized conser 99.1 7.9E-09 1.7E-13 89.6 16.6 238 141-390 15-272 (404)
247 KOG1354 Serine/threonine prote 99.1 1.8E-08 3.8E-13 87.5 17.3 237 106-343 22-361 (433)
248 PRK05137 tolB translocation pr 99.1 8.6E-08 1.9E-12 91.6 24.3 206 129-343 182-414 (435)
249 PF08662 eIF2A: Eukaryotic tra 99.1 3.3E-08 7.1E-13 83.2 18.8 130 249-391 37-182 (194)
250 KOG2139 WD40 repeat protein [G 99.0 2.8E-08 6.1E-13 86.8 17.7 187 150-379 98-302 (445)
251 PRK04922 tolB translocation pr 99.0 4.3E-08 9.4E-13 93.6 20.6 208 108-322 202-431 (433)
252 KOG4497 Uncharacterized conser 99.0 1.9E-09 4.1E-14 92.8 9.5 217 156-389 14-241 (447)
253 KOG0280 Uncharacterized conser 99.0 4.2E-08 9.2E-13 83.5 17.3 148 241-390 87-243 (339)
254 TIGR02800 propeller_TolB tol-p 99.0 1.4E-07 3.1E-12 89.8 23.4 197 128-333 169-386 (417)
255 KOG2315 Predicted translation 99.0 4.4E-07 9.5E-12 83.8 24.3 265 112-390 37-392 (566)
256 PRK00178 tolB translocation pr 99.0 1.9E-07 4.2E-12 89.2 23.1 205 130-341 180-406 (430)
257 PF08662 eIF2A: Eukaryotic tra 99.0 4.8E-08 1E-12 82.2 16.7 127 131-259 39-181 (194)
258 KOG3914 WD repeat protein WDR4 99.0 4.3E-08 9.3E-13 86.8 16.8 153 155-310 67-232 (390)
259 PRK05137 tolB translocation pr 99.0 2E-07 4.3E-12 89.1 22.6 193 107-305 199-416 (435)
260 KOG4190 Uncharacterized conser 99.0 1.4E-09 3E-14 99.7 7.0 213 142-391 727-951 (1034)
261 PF10282 Lactonase: Lactonase, 98.9 1.2E-05 2.5E-10 74.5 32.8 229 113-341 40-322 (345)
262 KOG4714 Nucleoporin [Nuclear s 98.9 2.9E-08 6.3E-13 83.0 13.5 189 111-302 38-255 (319)
263 PRK04792 tolB translocation pr 98.9 2.4E-07 5.1E-12 88.7 21.8 226 130-365 199-446 (448)
264 KOG4532 WD40-like repeat conta 98.9 5.4E-07 1.2E-11 75.9 20.5 223 162-389 84-332 (344)
265 KOG2066 Vacuolar assembly/sort 98.9 1.1E-07 2.3E-12 91.3 18.0 183 108-341 38-233 (846)
266 KOG1275 PAB-dependent poly(A) 98.9 4.2E-08 9.2E-13 95.1 14.9 178 201-386 148-340 (1118)
267 KOG2695 WD40 repeat protein [G 98.9 5.6E-09 1.2E-13 90.5 7.8 149 201-351 225-386 (425)
268 PRK02889 tolB translocation pr 98.9 3.9E-07 8.4E-12 86.8 20.8 207 108-322 194-423 (427)
269 TIGR02658 TTQ_MADH_Hv methylam 98.9 8.5E-06 1.8E-10 74.2 28.1 222 125-349 73-338 (352)
270 PF00400 WD40: WD domain, G-be 98.9 1.3E-08 2.8E-13 61.4 6.8 38 141-178 2-39 (39)
271 KOG1912 WD40 repeat protein [G 98.8 1.7E-06 3.8E-11 82.9 23.5 104 285-391 439-554 (1062)
272 KOG1912 WD40 repeat protein [G 98.8 3.2E-07 7E-12 87.7 18.0 275 114-392 20-368 (1062)
273 cd00216 PQQ_DH Dehydrogenases 98.8 5.1E-06 1.1E-10 80.5 26.8 264 118-392 60-428 (488)
274 TIGR02800 propeller_TolB tol-p 98.8 6.6E-07 1.4E-11 85.2 20.3 201 110-317 190-412 (417)
275 KOG4547 WD40 repeat-containing 98.8 5.8E-07 1.3E-11 83.5 18.4 181 203-389 7-221 (541)
276 KOG0309 Conserved WD40 repeat- 98.8 3E-08 6.6E-13 94.0 10.0 210 129-341 91-339 (1081)
277 KOG2315 Predicted translation 98.7 2.8E-06 6.1E-11 78.6 20.8 220 113-341 129-390 (566)
278 PLN02919 haloacid dehalogenase 98.7 2.8E-05 6.1E-10 81.7 30.6 233 154-391 571-891 (1057)
279 KOG0309 Conserved WD40 repeat- 98.7 7.7E-08 1.7E-12 91.3 9.5 215 150-369 24-259 (1081)
280 PRK00178 tolB translocation pr 98.7 4.9E-06 1.1E-10 79.6 21.3 208 108-322 197-426 (430)
281 PRK04792 tolB translocation pr 98.6 6.3E-06 1.4E-10 78.9 21.3 207 109-322 217-445 (448)
282 COG2706 3-carboxymuconate cycl 98.6 0.00021 4.6E-09 63.2 28.3 257 128-388 15-321 (346)
283 PF06433 Me-amine-dh_H: Methyl 98.6 0.00022 4.9E-09 63.7 28.9 256 129-392 17-324 (342)
284 KOG4649 PQQ (pyrrolo-quinoline 98.6 3.3E-05 7.3E-10 65.2 22.1 267 111-390 54-353 (354)
285 KOG2695 WD40 repeat protein [G 98.6 1.1E-07 2.5E-12 82.6 7.7 140 243-392 228-380 (425)
286 PLN02919 haloacid dehalogenase 98.6 9.8E-05 2.1E-09 77.7 29.9 219 124-345 585-892 (1057)
287 cd00216 PQQ_DH Dehydrogenases 98.6 8.1E-05 1.8E-09 72.2 27.3 224 120-351 111-434 (488)
288 KOG0882 Cyclophilin-related pe 98.6 1.4E-06 3E-11 78.5 13.7 240 108-348 8-312 (558)
289 PF15492 Nbas_N: Neuroblastoma 98.6 0.00011 2.3E-09 63.2 24.0 228 119-392 8-263 (282)
290 KOG4532 WD40-like repeat conta 98.5 2.4E-05 5.2E-10 66.3 18.9 190 121-310 86-291 (344)
291 PRK01029 tolB translocation pr 98.5 8.8E-05 1.9E-09 70.6 25.2 231 129-366 165-425 (428)
292 KOG2041 WD40 repeat protein [G 98.5 8.9E-06 1.9E-10 77.5 17.7 250 111-364 16-317 (1189)
293 COG4946 Uncharacterized protei 98.5 5.9E-05 1.3E-09 68.8 21.7 130 109-240 359-499 (668)
294 COG5170 CDC55 Serine/threonine 98.5 5.6E-06 1.2E-10 71.4 14.4 234 149-387 25-366 (460)
295 KOG3914 WD repeat protein WDR4 98.5 2.3E-06 5E-11 76.1 12.0 145 241-392 76-227 (390)
296 KOG2314 Translation initiation 98.5 9.3E-05 2E-09 68.8 22.4 266 112-388 213-525 (698)
297 KOG4714 Nucleoporin [Nuclear s 98.4 2.1E-06 4.6E-11 72.1 10.1 140 119-258 101-255 (319)
298 PF04762 IKI3: IKI3 family; I 98.4 0.00022 4.7E-09 73.8 26.9 262 110-387 76-378 (928)
299 PF00780 CNH: CNH domain; Int 98.4 0.00038 8.2E-09 62.3 25.5 226 114-350 2-264 (275)
300 COG5354 Uncharacterized protei 98.4 0.0001 2.2E-09 67.8 20.5 264 111-391 34-351 (561)
301 KOG1275 PAB-dependent poly(A) 98.4 1.2E-05 2.7E-10 78.6 15.4 176 161-341 146-342 (1118)
302 COG2706 3-carboxymuconate cycl 98.3 0.0018 3.9E-08 57.5 27.8 236 107-342 37-322 (346)
303 KOG2114 Vacuolar assembly/sort 98.3 0.00013 2.9E-09 71.2 21.2 213 111-350 27-252 (933)
304 PF00400 WD40: WD domain, G-be 98.3 2.7E-06 5.8E-11 51.1 5.8 37 303-339 1-39 (39)
305 KOG1832 HIV-1 Vpr-binding prot 98.3 8.2E-07 1.8E-11 86.2 4.7 189 107-310 1099-1300(1516)
306 COG5170 CDC55 Serine/threonine 98.3 1.6E-05 3.6E-10 68.6 11.7 231 108-339 25-365 (460)
307 KOG1645 RING-finger-containing 98.2 0.00012 2.5E-09 65.6 17.0 81 141-221 184-269 (463)
308 COG5354 Uncharacterized protei 98.2 0.00085 1.8E-08 62.0 22.8 245 129-391 108-398 (561)
309 PRK01029 tolB translocation pr 98.2 0.00091 2E-08 63.7 24.5 213 172-391 165-406 (428)
310 PRK04043 tolB translocation pr 98.2 0.0017 3.8E-08 61.5 26.1 203 129-341 169-400 (419)
311 PF08450 SGL: SMP-30/Gluconola 98.2 0.0031 6.7E-08 55.3 30.5 201 114-322 4-233 (246)
312 KOG2066 Vacuolar assembly/sort 98.2 1.2E-05 2.7E-10 77.6 10.5 146 229-392 39-191 (846)
313 PF08450 SGL: SMP-30/Gluconola 98.2 0.0044 9.6E-08 54.4 27.7 200 155-364 4-233 (246)
314 PF00780 CNH: CNH domain; Int 98.1 0.0049 1.1E-07 55.1 25.4 219 160-393 5-260 (275)
315 PF08596 Lgl_C: Lethal giant l 98.1 0.0006 1.3E-08 63.7 19.6 233 152-391 3-293 (395)
316 COG4946 Uncharacterized protei 98.1 0.0018 3.9E-08 59.4 21.5 183 197-392 274-481 (668)
317 PF03178 CPSF_A: CPSF A subuni 98.1 0.0072 1.6E-07 55.4 26.1 171 129-301 2-202 (321)
318 PRK04043 tolB translocation pr 98.1 0.0024 5.2E-08 60.6 23.1 184 111-302 189-401 (419)
319 PF03178 CPSF_A: CPSF A subuni 98.0 0.0017 3.6E-08 59.6 21.2 135 249-388 62-202 (321)
320 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.018 3.8E-07 56.4 29.7 184 118-306 68-338 (527)
321 PF04762 IKI3: IKI3 family; I 98.0 0.022 4.8E-07 59.3 30.3 275 108-388 208-564 (928)
322 KOG0882 Cyclophilin-related pe 98.0 9.4E-05 2E-09 67.1 11.3 204 149-392 8-235 (558)
323 KOG1832 HIV-1 Vpr-binding prot 97.9 8E-06 1.7E-10 79.6 4.4 198 139-348 1090-1298(1516)
324 KOG1920 IkappaB kinase complex 97.9 0.0061 1.3E-07 62.3 24.4 224 110-342 69-323 (1265)
325 KOG3621 WD40 repeat-containing 97.9 0.0013 2.8E-08 63.2 18.6 117 111-258 37-155 (726)
326 PF07433 DUF1513: Protein of u 97.9 0.011 2.3E-07 52.5 22.6 203 130-336 29-280 (305)
327 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.03 6.4E-07 54.9 27.3 234 116-351 117-500 (527)
328 KOG2041 WD40 repeat protein [G 97.8 0.00012 2.5E-09 70.2 9.9 154 229-388 14-186 (1189)
329 PF06433 Me-amine-dh_H: Methyl 97.8 0.024 5.3E-07 51.0 23.9 228 125-354 63-333 (342)
330 smart00320 WD40 WD40 repeats. 97.8 9.9E-05 2.1E-09 43.0 5.7 38 141-178 3-40 (40)
331 PF08596 Lgl_C: Lethal giant l 97.7 0.013 2.8E-07 54.9 21.2 184 138-351 74-300 (395)
332 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0057 1.2E-07 45.4 14.1 93 284-384 16-110 (111)
333 PF04053 Coatomer_WDAD: Coatom 97.6 0.027 5.9E-07 53.5 22.5 223 145-389 27-263 (443)
334 PF11768 DUF3312: Protein of u 97.6 0.0015 3.2E-08 61.8 13.6 72 108-182 258-331 (545)
335 KOG2314 Translation initiation 97.6 0.018 3.9E-07 54.2 20.1 225 114-341 310-573 (698)
336 KOG2114 Vacuolar assembly/sort 97.6 0.013 2.7E-07 58.0 19.8 148 241-393 79-248 (933)
337 PF15492 Nbas_N: Neuroblastoma 97.6 0.014 2.9E-07 50.5 17.8 26 114-139 48-75 (282)
338 PF04053 Coatomer_WDAD: Coatom 97.6 0.034 7.4E-07 52.9 22.3 216 111-340 34-261 (443)
339 PHA02713 hypothetical protein; 97.6 0.007 1.5E-07 59.7 18.4 209 173-390 273-535 (557)
340 KOG3621 WD40 repeat-containing 97.5 0.0019 4.1E-08 62.1 13.1 156 228-388 75-244 (726)
341 PHA02713 hypothetical protein; 97.5 0.014 3E-07 57.7 19.4 211 130-344 273-536 (557)
342 KOG1920 IkappaB kinase complex 97.5 0.02 4.3E-07 58.8 20.1 231 150-390 68-324 (1265)
343 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.016 3.4E-07 43.1 13.5 96 153-252 2-109 (111)
344 PF07433 DUF1513: Protein of u 97.3 0.1 2.2E-06 46.5 21.0 169 125-299 73-283 (305)
345 PF11768 DUF3312: Protein of u 97.3 0.0049 1.1E-07 58.4 13.3 74 148-260 257-332 (545)
346 KOG3617 WD40 and TPR repeat-co 97.3 0.0034 7.3E-08 61.7 11.8 70 111-181 61-132 (1416)
347 KOG1008 Uncharacterized conser 97.3 0.0001 2.2E-09 69.8 1.3 187 111-301 58-275 (783)
348 KOG2444 WD40 repeat protein [G 97.2 0.00065 1.4E-08 56.6 4.9 142 241-390 32-179 (238)
349 KOG1008 Uncharacterized conser 97.2 0.00014 3.1E-09 68.8 1.1 159 225-388 98-275 (783)
350 KOG4441 Proteins containing BT 97.1 0.088 1.9E-06 52.1 20.1 219 161-389 284-547 (571)
351 PRK02888 nitrous-oxide reducta 97.1 0.041 8.9E-07 53.6 16.9 173 125-302 211-405 (635)
352 KOG2444 WD40 repeat protein [G 97.1 0.0012 2.5E-08 55.2 5.6 102 239-343 70-179 (238)
353 KOG4441 Proteins containing BT 97.1 0.091 2E-06 51.9 19.8 210 129-342 301-547 (571)
354 TIGR03074 PQQ_membr_DH membran 97.1 0.3 6.5E-06 49.9 23.7 223 118-349 193-485 (764)
355 COG3204 Uncharacterized protei 97.0 0.21 4.6E-06 43.7 19.4 196 112-309 46-270 (316)
356 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.2 4.3E-06 43.0 25.9 136 120-258 24-166 (354)
357 KOG2079 Vacuolar assembly/sort 97.0 0.035 7.6E-07 56.4 15.4 81 111-191 91-171 (1206)
358 KOG1645 RING-finger-containing 96.9 0.002 4.4E-08 57.9 6.2 82 264-346 184-271 (463)
359 TIGR03074 PQQ_membr_DH membran 96.9 0.13 2.9E-06 52.4 19.1 101 162-262 194-349 (764)
360 KOG2079 Vacuolar assembly/sort 96.8 0.0079 1.7E-07 60.8 9.9 114 270-387 86-202 (1206)
361 smart00320 WD40 WD40 repeats. 96.8 0.0038 8.3E-08 35.8 4.9 37 303-339 2-40 (40)
362 PRK02888 nitrous-oxide reducta 96.7 0.65 1.4E-05 45.6 21.8 102 282-389 287-405 (635)
363 KOG4640 Anaphase-promoting com 96.7 0.011 2.4E-07 56.4 9.8 75 111-187 22-99 (665)
364 COG3386 Gluconolactonase [Carb 96.7 0.45 9.7E-06 43.0 22.2 192 125-323 43-264 (307)
365 PF05096 Glu_cyclase_2: Glutam 96.6 0.44 9.5E-06 41.6 23.1 185 141-329 34-249 (264)
366 KOG4499 Ca2+-binding protein R 96.6 0.38 8.3E-06 40.7 17.0 195 127-324 35-264 (310)
367 PF08553 VID27: VID27 cytoplas 96.5 0.082 1.8E-06 53.4 14.8 138 200-340 492-646 (794)
368 COG5276 Uncharacterized conser 96.5 0.49 1.1E-05 41.5 28.3 271 109-388 86-369 (370)
369 PF12894 Apc4_WD40: Anaphase-p 96.5 0.011 2.5E-07 36.6 5.4 34 150-184 11-44 (47)
370 PF04841 Vps16_N: Vps16, N-ter 96.5 0.82 1.8E-05 43.4 20.8 49 211-259 62-111 (410)
371 COG5276 Uncharacterized conser 96.5 0.55 1.2E-05 41.2 23.4 163 184-348 79-248 (370)
372 PF08553 VID27: VID27 cytoplas 96.4 0.4 8.6E-06 48.7 18.4 131 126-257 501-647 (794)
373 PHA02790 Kelch-like protein; P 96.2 0.54 1.2E-05 45.7 18.1 176 161-341 271-470 (480)
374 COG1520 FOG: WD40-like repeat 96.1 1.2 2.6E-05 41.7 23.0 195 115-312 64-279 (370)
375 PF02897 Peptidase_S9_N: Proly 96.0 1.6 3.4E-05 41.6 29.1 238 152-392 125-408 (414)
376 PHA03098 kelch-like protein; P 95.9 0.72 1.6E-05 45.5 18.0 180 161-342 294-512 (534)
377 PF14781 BBS2_N: Ciliary BBSom 95.8 0.39 8.3E-06 37.1 11.9 103 156-258 4-126 (136)
378 PF04841 Vps16_N: Vps16, N-ter 95.8 1.8 3.9E-05 41.1 25.7 181 130-324 62-270 (410)
379 PHA03098 kelch-like protein; P 95.8 1 2.2E-05 44.5 18.3 173 211-390 312-513 (534)
380 KOG2395 Protein involved in va 95.8 0.22 4.8E-06 47.0 12.4 139 200-341 344-500 (644)
381 PF10168 Nup88: Nuclear pore c 95.7 2.7 5.9E-05 42.7 22.2 34 227-260 144-182 (717)
382 KOG1897 Damage-specific DNA bi 95.7 2.9 6.4E-05 42.9 28.8 147 234-388 779-942 (1096)
383 PF14583 Pectate_lyase22: Olig 95.7 1.7 3.7E-05 40.2 25.1 255 125-387 54-380 (386)
384 KOG4640 Anaphase-promoting com 95.7 0.081 1.8E-06 50.8 9.4 89 150-239 20-115 (665)
385 PHA02790 Kelch-like protein; P 95.6 0.63 1.4E-05 45.2 16.0 171 211-391 288-473 (480)
386 KOG3617 WD40 and TPR repeat-co 95.6 0.16 3.5E-06 50.6 11.4 102 234-341 20-131 (1416)
387 PF06977 SdiA-regulated: SdiA- 95.5 1.5 3.3E-05 38.2 22.9 191 144-336 15-245 (248)
388 COG0823 TolB Periplasmic compo 95.5 2.3 4.9E-05 40.5 18.5 172 130-304 174-361 (425)
389 PRK13616 lipoprotein LpqB; Pro 95.3 3.5 7.6E-05 41.1 19.8 183 150-336 349-563 (591)
390 COG3490 Uncharacterized protei 95.2 0.87 1.9E-05 39.8 13.1 43 127-169 138-180 (366)
391 PF08728 CRT10: CRT10; InterP 95.1 1.3 2.8E-05 44.4 16.0 103 284-387 115-245 (717)
392 COG3391 Uncharacterized conser 95.1 3 6.5E-05 39.2 22.0 186 125-313 92-295 (381)
393 smart00356 ZnF_C3H1 zinc finge 94.9 0.017 3.6E-07 31.0 1.5 22 35-56 4-26 (27)
394 KOG1898 Splicing factor 3b, su 94.7 4 8.7E-05 42.2 18.2 172 211-388 854-1048(1205)
395 PF05096 Glu_cyclase_2: Glutam 94.7 2.8 6.1E-05 36.7 19.3 155 230-392 45-207 (264)
396 COG3823 Glutamine cyclotransfe 94.6 2.2 4.8E-05 35.7 13.5 149 161-309 55-212 (262)
397 PF12894 Apc4_WD40: Anaphase-p 94.6 0.15 3.3E-06 31.6 5.4 33 353-388 9-41 (47)
398 COG3391 Uncharacterized conser 94.6 4.2 9E-05 38.2 27.2 251 131-391 13-286 (381)
399 KOG1898 Splicing factor 3b, su 94.5 2.8 6E-05 43.3 16.5 167 130-300 854-1047(1205)
400 KOG1897 Damage-specific DNA bi 94.4 7 0.00015 40.3 25.6 254 122-383 272-561 (1096)
401 PF02897 Peptidase_S9_N: Proly 94.1 5.4 0.00012 37.9 28.0 217 125-345 146-408 (414)
402 PRK13616 lipoprotein LpqB; Pro 93.6 7.1 0.00015 39.0 17.6 163 130-297 380-564 (591)
403 KOG2395 Protein involved in va 93.5 1.9 4.2E-05 41.0 12.5 132 125-258 352-501 (644)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 93.4 6.7 0.00015 37.1 16.2 78 229-310 307-407 (415)
405 PLN02153 epithiospecifier prot 92.9 7.6 0.00016 35.8 20.3 143 199-343 84-286 (341)
406 PF10313 DUF2415: Uncharacteri 92.7 0.65 1.4E-05 28.0 5.5 32 151-182 1-35 (43)
407 PF12234 Rav1p_C: RAVE protein 92.1 6.4 0.00014 39.2 14.6 97 285-386 43-154 (631)
408 COG1520 FOG: WD40-like repeat 92.0 10 0.00023 35.3 22.0 185 163-351 69-278 (370)
409 PF00930 DPPIV_N: Dipeptidyl p 91.3 12 0.00027 34.6 20.2 215 159-386 1-264 (353)
410 PF11715 Nup160: Nucleoporin N 91.2 2.2 4.7E-05 42.3 10.9 74 118-191 157-259 (547)
411 COG0823 TolB Periplasmic compo 91.1 9.9 0.00022 36.2 14.6 169 211-383 219-406 (425)
412 PF08801 Nucleoporin_N: Nup133 91.0 11 0.00024 35.9 15.2 61 111-180 28-96 (422)
413 PF14781 BBS2_N: Ciliary BBSom 91.0 6.1 0.00013 30.6 11.5 101 121-223 12-130 (136)
414 KOG4460 Nuclear pore complex, 90.2 18 0.00039 34.8 15.1 30 231-260 167-201 (741)
415 KOG1896 mRNA cleavage and poly 90.2 28 0.00061 37.0 22.0 146 241-388 1048-1213(1366)
416 PF05694 SBP56: 56kDa selenium 90.1 15 0.00032 34.7 14.2 144 241-385 89-274 (461)
417 PF00642 zf-CCCH: Zinc finger 90.1 0.089 1.9E-06 28.3 0.0 23 35-57 3-27 (27)
418 KOG1983 Tomosyn and related SN 90.1 14 0.0003 39.4 15.8 104 151-259 36-146 (993)
419 PF14727 PHTB1_N: PTHB1 N-term 90.0 18 0.00038 34.4 32.0 137 120-257 38-204 (418)
420 PF07569 Hira: TUP1-like enhan 89.9 2.7 5.8E-05 36.0 8.9 71 111-182 14-97 (219)
421 PF11715 Nup160: Nucleoporin N 89.5 2.5 5.4E-05 41.9 9.7 73 238-310 157-257 (547)
422 KOG2063 Vacuolar assembly/sort 89.4 19 0.00041 37.4 15.6 73 111-184 17-100 (877)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 89.3 3.9 8.5E-05 38.6 10.1 53 142-194 299-351 (415)
424 KOG2280 Vacuolar assembly/sort 89.1 27 0.00059 35.2 15.9 176 127-310 62-255 (829)
425 KOG3630 Nuclear pore complex, 89.0 10 0.00022 39.9 13.2 136 231-368 102-256 (1405)
426 KOG4499 Ca2+-binding protein R 88.9 14 0.00031 31.7 15.0 87 277-365 161-263 (310)
427 PF08801 Nucleoporin_N: Nup133 88.6 13 0.00028 35.5 13.6 28 358-388 192-219 (422)
428 KOG2377 Uncharacterized conser 88.5 23 0.00049 33.6 17.3 139 121-259 35-187 (657)
429 PLN02193 nitrile-specifier pro 87.8 28 0.0006 33.8 20.9 132 211-344 194-354 (470)
430 COG5167 VID27 Protein involved 87.4 12 0.00027 35.8 11.7 140 200-341 478-632 (776)
431 PLN02153 epithiospecifier prot 87.3 24 0.00052 32.5 20.2 64 281-344 136-228 (341)
432 KOG3522 Predicted guanine nucl 86.6 5.1 0.00011 40.5 9.4 131 121-255 549-695 (925)
433 PF05694 SBP56: 56kDa selenium 86.3 31 0.00066 32.7 17.4 132 128-260 156-345 (461)
434 KOG1900 Nuclear pore complex, 86.3 53 0.0011 35.4 17.1 33 311-343 240-274 (1311)
435 PF12234 Rav1p_C: RAVE protein 86.2 32 0.0007 34.4 14.7 105 151-256 30-155 (631)
436 PF00930 DPPIV_N: Dipeptidyl p 86.2 28 0.00061 32.2 21.5 56 128-186 22-77 (353)
437 PF10168 Nup88: Nuclear pore c 86.1 25 0.00054 36.1 14.2 35 355-389 146-180 (717)
438 PF07569 Hira: TUP1-like enhan 85.9 9.3 0.0002 32.7 9.7 28 158-185 18-45 (219)
439 KOG1900 Nuclear pore complex, 85.7 15 0.00033 39.2 12.6 138 121-259 91-274 (1311)
440 PRK14131 N-acetylneuraminic ac 85.7 31 0.00068 32.3 23.5 38 210-247 189-230 (376)
441 PF10433 MMS1_N: Mono-function 85.5 38 0.00083 33.2 23.7 224 120-346 223-481 (504)
442 COG3490 Uncharacterized protei 84.5 29 0.00062 30.8 19.7 86 155-240 72-172 (366)
443 TIGR03548 mutarot_permut cycli 84.5 32 0.00069 31.4 15.2 64 280-343 121-196 (323)
444 PF14583 Pectate_lyase22: Olig 84.2 26 0.00056 32.7 12.2 133 125-257 209-381 (386)
445 PF14727 PHTB1_N: PTHB1 N-term 83.7 41 0.00089 32.0 25.3 135 161-300 36-203 (418)
446 TIGR03547 muta_rot_YjhT mutatr 83.4 37 0.0008 31.3 22.7 83 210-292 168-267 (346)
447 PF02333 Phytase: Phytase; In 83.2 40 0.00087 31.5 21.9 140 249-389 127-291 (381)
448 PF14761 HPS3_N: Hermansky-Pud 83.2 27 0.00059 29.6 15.4 50 120-170 29-79 (215)
449 KOG4460 Nuclear pore complex, 83.1 45 0.00097 32.3 13.3 93 275-390 105-200 (741)
450 COG3823 Glutamine cyclotransfe 83.0 15 0.00032 31.0 9.1 116 234-352 50-169 (262)
451 smart00564 PQQ beta-propeller 82.9 3.9 8.5E-05 22.6 4.3 27 283-309 6-32 (33)
452 PRK10115 protease 2; Provision 82.7 61 0.0013 33.2 30.4 238 151-391 127-397 (686)
453 TIGR02276 beta_rpt_yvtn 40-res 82.6 7.6 0.00016 22.7 6.1 33 160-192 1-34 (42)
454 KOG2280 Vacuolar assembly/sort 82.3 21 0.00044 36.0 11.2 49 211-259 65-114 (829)
455 PF14870 PSII_BNR: Photosynthe 82.1 39 0.00084 30.6 21.7 110 228-338 185-301 (302)
456 PF12768 Rax2: Cortical protei 82.0 38 0.00081 30.3 13.0 57 127-184 14-76 (281)
457 KOG2714 SETA binding protein S 81.7 31 0.00067 32.3 11.5 31 357-391 432-462 (465)
458 PF15390 DUF4613: Domain of un 81.1 51 0.0011 32.5 13.1 141 111-259 21-188 (671)
459 PF10313 DUF2415: Uncharacteri 81.1 6.8 0.00015 23.6 4.9 32 358-389 3-34 (43)
460 KOG1896 mRNA cleavage and poly 81.1 54 0.0012 35.1 14.1 137 163-300 1047-1212(1366)
461 PF13570 PQQ_3: PQQ-like domai 80.5 4.9 0.00011 23.6 4.3 24 318-341 16-39 (40)
462 COG5167 VID27 Protein involved 79.7 61 0.0013 31.3 15.1 137 241-388 482-632 (776)
463 TIGR03548 mutarot_permut cycli 79.6 49 0.0011 30.1 15.2 65 279-343 69-149 (323)
464 PF12657 TFIIIC_delta: Transcr 79.2 12 0.00026 30.7 7.7 24 113-136 8-31 (173)
465 PF12341 DUF3639: Protein of u 77.5 7.8 0.00017 20.8 3.9 25 230-254 2-26 (27)
466 PF01011 PQQ: PQQ enzyme repea 77.4 6.4 0.00014 22.8 4.1 27 285-311 2-28 (38)
467 PRK10115 protease 2; Provision 76.1 98 0.0021 31.8 24.2 183 198-387 135-343 (686)
468 KOG2247 WD40 repeat-containing 75.7 0.39 8.5E-06 45.1 -2.2 102 230-335 75-182 (615)
469 COG3386 Gluconolactonase [Carb 75.1 65 0.0014 29.2 23.2 213 158-379 32-277 (307)
470 PF01011 PQQ: PQQ enzyme repea 74.8 10 0.00022 22.0 4.4 29 164-192 2-30 (38)
471 smart00564 PQQ beta-propeller 74.4 8.5 0.00018 21.2 4.0 24 164-187 8-31 (33)
472 KOG3522 Predicted guanine nucl 74.4 12 0.00027 37.9 7.3 144 241-389 549-698 (925)
473 PF12657 TFIIIC_delta: Transcr 74.0 26 0.00057 28.6 8.4 29 230-258 86-122 (173)
474 TIGR03118 PEPCTERM_chp_1 conse 73.6 69 0.0015 28.9 23.9 210 152-365 24-307 (336)
475 COG3292 Predicted periplasmic 73.6 57 0.0012 32.0 11.1 105 227-337 162-271 (671)
476 PF07676 PD40: WD40-like Beta 73.5 15 0.00033 21.2 5.5 32 146-177 4-38 (39)
477 PF10650 zf-C3H1: Putative zin 72.4 2.1 4.5E-05 21.9 0.9 19 38-56 3-22 (23)
478 KOG1916 Nuclear protein, conta 72.0 3.2 6.9E-05 42.3 2.8 54 124-179 200-264 (1283)
479 PLN02193 nitrile-specifier pro 70.6 1.1E+02 0.0023 29.8 20.6 129 161-291 228-386 (470)
480 PF14761 HPS3_N: Hermansky-Pud 70.4 27 0.00058 29.6 7.5 57 231-290 19-78 (215)
481 PF08728 CRT10: CRT10; InterP 70.1 39 0.00084 34.3 9.7 99 241-340 116-245 (717)
482 KOG2377 Uncharacterized conser 69.8 1.1E+02 0.0023 29.4 13.3 121 201-322 34-162 (657)
483 PLN00033 photosystem II stabil 69.6 1E+02 0.0022 29.2 17.3 140 154-298 242-396 (398)
484 PF13570 PQQ_3: PQQ-like domai 67.7 11 0.00024 22.0 3.5 24 279-302 17-40 (40)
485 KOG1916 Nuclear protein, conta 67.5 13 0.00027 38.3 5.7 101 241-346 197-328 (1283)
486 KOG3616 Selective LIM binding 67.5 18 0.00039 36.4 6.7 35 150-184 14-48 (1636)
487 KOG0783 Uncharacterized conser 66.7 1.7E+02 0.0036 30.5 13.0 38 143-184 223-260 (1267)
488 PRK13684 Ycf48-like protein; P 65.9 1.1E+02 0.0024 28.1 22.2 206 85-299 114-329 (334)
489 KOG3630 Nuclear pore complex, 65.2 95 0.0021 33.3 11.3 91 229-324 155-254 (1405)
490 PRK14131 N-acetylneuraminic ac 64.6 1.2E+02 0.0027 28.3 21.2 14 211-224 107-120 (376)
491 COG3292 Predicted periplasmic 64.1 1.5E+02 0.0033 29.2 15.7 264 108-384 163-443 (671)
492 PF09826 Beta_propel: Beta pro 61.8 1E+02 0.0023 30.4 10.9 92 279-375 18-137 (521)
493 PF15500 Toxin_39: Putative RN 59.8 4.5 9.7E-05 28.2 0.8 17 43-59 25-41 (96)
494 PF12768 Rax2: Cortical protei 58.8 1.4E+02 0.003 26.8 12.4 96 211-308 17-130 (281)
495 KOG1983 Tomosyn and related SN 56.9 1.1E+02 0.0024 32.9 10.7 59 283-344 209-267 (993)
496 PF06977 SdiA-regulated: SdiA- 56.8 1.4E+02 0.003 26.2 22.6 181 199-385 31-247 (248)
497 PF08309 LVIVD: LVIVD repeat; 56.6 41 0.00089 20.2 6.0 34 315-348 3-36 (42)
498 TIGR03032 conserved hypothetic 55.8 1.6E+02 0.0035 26.8 11.5 80 161-240 212-315 (335)
499 COG5161 SFT1 Pre-mRNA cleavage 53.4 2.9E+02 0.0063 29.0 17.5 66 322-388 1101-1167(1319)
500 PF14779 BBS1: Ciliary BBSome 52.4 57 0.0012 28.6 6.6 66 272-338 175-255 (257)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=297.79 Aligned_cols=279 Identities=24% Similarity=0.372 Sum_probs=244.2
Q ss_pred ccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224 104 NRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (393)
Q Consensus 104 ~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (393)
....|..+|.|++|+++ .+++|+.|.++++||..+. .++++.++|...|.|++|+||++.||+|+.||+|++||..+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 35568889999999987 5778999999999999998 89999999999999999999999999999999999999999
Q ss_pred CeEEE-EEecCC-ceEEEE-------eCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCC
Q 016224 182 GQCAG-VINLGG-EVGCMI-------SEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDG 249 (393)
Q Consensus 182 ~~~~~-~~~~~~-~~~~~~-------~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg 249 (393)
|+++. .+..+. .+.++. +..+.+++ +.||.++|||+..+..+ .+.+|..+|+|+.|..+ ++++|+.|+
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr 268 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR 268 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence 87654 344333 343332 35556665 48999999999998877 88999999999999966 999999999
Q ss_pred cEEEEEeccCCccccCceeecCceeeEEEEEEc-------------CC-------------------------EEEEecC
Q 016224 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-------------AN-------------------------KLYSGSM 291 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-------------~~-------------------------~l~sg~~ 291 (393)
+|++|+...+ .+...+++|...|..++.+ ++ +|++|+.
T Consensus 269 tIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 269 TIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred eEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 9999998886 6778889999999888765 22 4999999
Q ss_pred CCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 292 DNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 292 dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
|.++.+|+... .+++..+.+|...|+.+.|+ +.+++++|.|..|++||.++++.+..+.+|-.. |..++|+.|+.
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~--VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA--VYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce--eEEEEeccCcc
Confidence 99999999764 56899999999999999999 569999999999999999999999999888765 99999998877
Q ss_pred CCcEEEEEeCCCeEEEEeCCceee
Q 016224 369 GKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+|++++.|.++++|++++.+|
T Consensus 423 ---LlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 423 ---LLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred ---EEEEcCCCceEEEEEeeeeee
Confidence 999999999999999998876
No 2
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-42 Score=293.70 Aligned_cols=292 Identities=23% Similarity=0.359 Sum_probs=255.3
Q ss_pred CCCcccCCCCCCCcccccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE
Q 016224 88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS 167 (393)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s 167 (393)
-++||+.++....++++.......|+|+++.++.+++|..|++|+|||..+- .+++.+.||++.|.|+.|. .+.|++
T Consensus 176 idsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd--~rviis 252 (499)
T KOG0281|consen 176 IESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD--ERVIVS 252 (499)
T ss_pred hhcchhccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeecc--ceEEEe
Confidence 3589999999999999999999999999999999999999999999999887 8899999999999999985 569999
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCc-eEEE-EeCCCEEEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCCE
Q 016224 168 GSKDETVRVWDCASGQCAGVINLGGE-VGCM-ISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGNDL 241 (393)
Q Consensus 168 ~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~~ 241 (393)
|+.|.+|+|||+++++++.++-++.+ +..+ ++++-++.++.|.++.+||+.....+ .+.+|...|+.+.|+..+
T Consensus 253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ky 332 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY 332 (499)
T ss_pred cCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccce
Confidence 99999999999999999998876643 4333 45666666779999999999887654 678999999999999999
Q ss_pred EEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE
Q 016224 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321 (393)
Q Consensus 242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 321 (393)
+++++.|.+|++|++.+. +.+..+.+|...|.|+.+.+.++++|+.|.+|++||++.|.+++.+++|+.-|.++.|
T Consensus 333 IVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF 408 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 408 (499)
T ss_pred EEEecCCceEEEEeccce----eeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee
Confidence 999999999999999987 7789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEeCCCcEEEEEcCCCcceEEEE-------eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 322 WDQFLLSCSLDKTIKVWFATDSGNLEVTY-------THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 322 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
+.+.+++|+.||+|+|||+.......... ...+...|..+.|- ...|++++.|.+|-|||.-.+.
T Consensus 409 d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-----~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 409 DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-----EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-----ceEEEeccCCCeEEEEEcCCCC
Confidence 99999999999999999997655432111 11223357777663 3378999999999999987664
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-40 Score=285.07 Aligned_cols=269 Identities=23% Similarity=0.357 Sum_probs=244.0
Q ss_pred eecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC--CCEEEEEeCCCcEEEEECCCCe
Q 016224 108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 108 ~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~--~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
...||..+.|+.+ .+++|+-+|.++||+..+. ..+.+|.+|.+.|.++.|+|. +..||||+.||+|++|++++..
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 3458888888865 5778999999999999998 899999999999999999996 5689999999999999999988
Q ss_pred EEEEEecCCc-e--EEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224 184 CAGVINLGGE-V--GCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (393)
Q Consensus 184 ~~~~~~~~~~-~--~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~ 256 (393)
.+..+..+.. + ..+.++|++|.++ .|.+-++||+.++..+ ...+|...|.+++|.++ ++++|+.|..-+|||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 8888876543 2 3455899999976 8999999999999887 78899999999999998 9999999999999999
Q ss_pred ccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeC
Q 016224 257 NVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSL 331 (393)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~ 331 (393)
+++ ..+..+.+|...|.+++|+++ .||||+.|++++|||++..+.+.++.+|...|+.+.|+ |.+|+|++.
T Consensus 333 Rtg----r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 333 RTG----RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ccC----cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 998 678889999999999999865 79999999999999999999999999999999999998 679999999
Q ss_pred CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
|++++||..++..++..+.+|... |.++..++++. +|+|++.|.++++|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~k--V~s~Dis~d~~---~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGK--VISLDISPDSQ---AIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccc--eEEEEeccCCc---eEEEeccCceeeecc
Confidence 999999999999999999888766 99999988877 999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-39 Score=277.32 Aligned_cols=276 Identities=24% Similarity=0.387 Sum_probs=242.5
Q ss_pred cccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-----CCCEEEEEeCCCcEE
Q 016224 103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-----GSDKLYSGSKDETVR 175 (393)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-----~~~~l~s~s~dg~v~ 175 (393)
.....|+.-|.|++|+||+ +++|+.||.|++||.+++.+..+.|.+|+..|++++|.| ..++||+++.||.|+
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr 230 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR 230 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence 3455688899999999985 568999999999999999888899999999999999954 668999999999999
Q ss_pred EEECCCCeEEEEEecCC-ceEEEEeC-CCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC------------
Q 016224 176 VWDCASGQCAGVINLGG-EVGCMISE-GPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN------------ 239 (393)
Q Consensus 176 iwd~~~~~~~~~~~~~~-~~~~~~~~-~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~------------ 239 (393)
|||+..++++..+..+. ++.|+... ..++++| .|++|++|+...+... .+.+|...|+.|+.+.
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 99999999999888764 56666654 4566665 8899999999998877 8899999999998871
Q ss_pred -C-------------------------EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecC
Q 016224 240 -D-------------------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSM 291 (393)
Q Consensus 240 -~-------------------------~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~ 291 (393)
+ .|++|+.|.++.+|+..... +++..+.+|...|..+.|++ .++|+++.
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeec
Confidence 1 39999999999999977654 67888899999999998875 58999999
Q ss_pred CCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224 292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369 (393)
Q Consensus 292 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 369 (393)
|..|++||.++|+.+.+|++|-..|..++|+. ++|++||.|.++++||+++.+....+.+|..+ |.++.|+|++.
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE--Vf~vDwspDG~- 464 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE--VFAVDWSPDGQ- 464 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce--EEEEEecCCCc-
Confidence 99999999999999999999999999999994 59999999999999999988777777777766 99999999877
Q ss_pred CcEEEEEeCCCeEEEEe
Q 016224 370 KPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 370 ~~~l~s~s~dg~I~iwd 386 (393)
.+++|+.|..+++|.
T Consensus 465 --rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 --RVASGGKDKVLRLWR 479 (480)
T ss_pred --eeecCCCceEEEeec
Confidence 899999999999995
No 5
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.8e-37 Score=291.52 Aligned_cols=276 Identities=38% Similarity=0.625 Sum_probs=246.4
Q ss_pred eeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 107 VIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
.+...++|.+|..+.+++++.|.+|++||..+++.+...+.+|.+.|.+++|...+.+|++|+.|.++++||+.+|+|..
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 45668999999999999999999999999999955555599999999999998888999999999999999999999999
Q ss_pred EEecCCceEEEEeCCCEEEEE--cCCeEEEEECCCCceeeec-CCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc
Q 016224 187 VINLGGEVGCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF 263 (393)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~-~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~ 263 (393)
.+..+............+.++ .|.+|++|++.++..+.+. +|..+|.++..+.+++++|+.|++|++||+.+.
T Consensus 286 ~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~---- 361 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG---- 361 (537)
T ss_pred EecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc----
Confidence 999877766666555555444 8999999999999988554 499999999999999999999999999999966
Q ss_pred cCceeecCceeeEEEEEEcC-CEEEEecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcC
Q 016224 264 EPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 264 ~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~ 341 (393)
+++..+.+|...|.++.+++ +++++|+.|++|++||+++. +++.++.+|...+..+.+.+++|++++.|++|++||..
T Consensus 362 ~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecc
Confidence 88999999999999999999 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+++.+..+... +...+..+++. +..+++++.||.+++||++++++
T Consensus 442 ~~~~~~~~~~~-~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 442 EGECLRTLEGR-HVGGVSALALG-----KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cCceeeeeccC-CcccEEEeecC-----cceEEEEecCCeeEEEecccCch
Confidence 99998888774 22346666554 23799999999999999999864
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=242.28 Aligned_cols=270 Identities=15% Similarity=0.225 Sum_probs=232.3
Q ss_pred eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--
Q 016224 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-- 182 (393)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-- 182 (393)
.|.+.|+|+.|+.+ .+++++.||.+.|||.-+. ..++.+......|..++|+|.++++|.|+.|....||++.+.
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 46679999999987 5788999999999999887 667778888999999999999999999999999999999855
Q ss_pred ----eEEEEEecCCce-EE--EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeC-C--EEEEEeCCCcE
Q 016224 183 ----QCAGVINLGGEV-GC--MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-D--LLFAGTQDGAI 251 (393)
Q Consensus 183 ----~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I 251 (393)
...+.+..+... .+ +..++.+|..+.|.+..+||+++++.. .+.+|.+.|.++.++| + .|++|+-|+..
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence 233444444433 22 224666666779999999999999988 8899999999999998 3 99999999999
Q ss_pred EEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEc--CCE
Q 016224 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQF 325 (393)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~ 325 (393)
++||++.+ ...+.+.+|...|.++.|. |.-|++|+.|+++++||++..+.+..+.. -...|++++|+ |++
T Consensus 212 klWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 212 KLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred eeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 99999998 6789999999999999985 55899999999999999999988888863 34578999998 899
Q ss_pred EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
|++|..|.++.+||.-.++....+.+|... |.++..+|++. .|+||+.|..|+||.
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNR--vScl~~s~DG~---av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGVLAGHENR--VSCLGVSPDGM---AVATGSWDSTLRIWA 343 (343)
T ss_pred EEeeecCCceeEeeccccceEEEeeccCCe--eEEEEECCCCc---EEEecchhHheeecC
Confidence 999999999999999888888888877665 77777777766 899999999999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-34 Score=239.01 Aligned_cols=275 Identities=20% Similarity=0.293 Sum_probs=230.5
Q ss_pred ceeecceEEeeEe---cCcEEEecCCCeEEEEECCC-----CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224 106 AVIKTDILCRNWV---QGNCMYGEKCKFLHSWTVGD-----GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (393)
Q Consensus 106 ~~~~~~i~c~~~~---~~~~~~g~~dg~i~vwd~~~-----~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw 177 (393)
..|...|+.++.. ++.++.++.|.++.+|++.. | .+++.+.||+..|..++.++||++.++++.|+++++|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G-~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG-VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC-ceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 3456677777665 45677899999999999863 4 5688999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCc-eEE--EEeCCCEEEEE-cCCeEEEEECCCCceeeecCC--CCcEEEEEEeCC----EEEEEeC
Q 016224 178 DCASGQCAGVINLGGE-VGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP--VGQVYAMAVGND----LLFAGTQ 247 (393)
Q Consensus 178 d~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~--~~~v~~l~~~~~----~l~~~~~ 247 (393)
|+.+++..+.|..+.. +.+ +.++++.+++| .|++|++|++......++..+ .+-|.++.|+|+ +|++++.
T Consensus 91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence 9999999988887654 333 34677777776 788999999999988866554 789999999997 8999999
Q ss_pred CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC-C
Q 016224 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-Q 324 (393)
Q Consensus 248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~ 324 (393)
|++|++||+++- +....+.+|+..++.++++ |.++++|+.||.+.+||++.++.+.++. |...|.+++|++ +
T Consensus 171 DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 171 DKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR 245 (315)
T ss_pred CceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc
Confidence 999999999986 6678888999999888775 6799999999999999999999988886 778999999995 4
Q ss_pred EEEEEeCCCcEEEEEcCCCcceEEEEee-------cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 325 FLLSCSLDKTIKVWFATDSGNLEVTYTH-------NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 325 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+.+....+..|+|||+.+...+..+... ......+.++|++++. .|++|-.|+.|++|.+..
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~---tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ---TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc---EEEeeecCCcEEEEEeec
Confidence 6667777788999999887766554321 2245678889988776 899999999999999853
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-35 Score=256.31 Aligned_cols=268 Identities=20% Similarity=0.335 Sum_probs=236.4
Q ss_pred ecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
...|+|++|+.+ .+++|+.||.+++|+... .++.+|..|+++|.+|.|+..|+||++++.|+++.+||..+++..+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 359999999955 466899999999999755 5888999999999999999999999999999999999999999999
Q ss_pred EEecCCce---EEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224 187 VINLGGEV---GCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 187 ~~~~~~~~---~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~ 260 (393)
.+..+... ..+..+..+..++.|+.|+++.+...... ++.+|.++|.+|.|+|. +|++++.|++++||.....
T Consensus 313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~- 391 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS- 391 (524)
T ss_pred eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-
Confidence 88877655 45667788888889999999999888777 88899999999999987 9999999999999998776
Q ss_pred ccccCceeecCceeeEEEEEEcC-----------CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEE
Q 016224 261 NCFEPAASLKGHSLAVVSLVVGA-----------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL 327 (393)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~l~~~~-----------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~ 327 (393)
.....+..|...|..+.|++ ..+++++.|++|++||+..+.++.+|..|..+|.+++|+ +.+++
T Consensus 392 ---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 392 ---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred ---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 55678889999999998852 369999999999999999999999999999999999999 78999
Q ss_pred EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 328 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
+|+.||.|.||+.++++.+..... ...+..++|+..+. +|..+-.||.+++-|++
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~---kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGD---KLGACASDGSVCVLDLR 523 (524)
T ss_pred ecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCC---EEEEEecCCCceEEEec
Confidence 999999999999988776555443 34589999988765 78888889999999875
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=246.57 Aligned_cols=273 Identities=21% Similarity=0.335 Sum_probs=236.1
Q ss_pred cceeecceEEeeEecCcEE--EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-
Q 016224 105 RAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS- 181 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~- 181 (393)
.+.+..+|+.+-|.+...+ +++.|++|++||..++ ++.+.|++|.+.|.+|+|+..|++|++++.|-.+++||.++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 3457779999999988544 5778999999999999 88999999999999999999999999999999999999987
Q ss_pred CeEEEEEecCCce---EEEEeCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224 182 GQCAGVINLGGEV---GCMISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (393)
Q Consensus 182 ~~~~~~~~~~~~~---~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw 254 (393)
.++++....+... ..+.+.+.++++ +.|.+|+.|++.++..+ ++.+|...|..++.+.| ++++++.|.+|++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 4555555544432 334566777765 58999999999999988 88999999999999998 89999999999999
Q ss_pred EeccCCccccCceeecCceeeEEEEEEc------------C-----CEEEEecCCCcEEEeeCCCcceeeEeccCccceE
Q 016224 255 KFNVTTNCFEPAASLKGHSLAVVSLVVG------------A-----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~------------~-----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 317 (393)
-+.+. +....+..|.-+|-+++|- + .++.+++.|++|++||+.++.++.++.+|...|.
T Consensus 263 ~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 263 VVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred Eeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 99887 5556677788888777762 2 3799999999999999999999999999999999
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 318 SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 318 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
.++|+ |+||+++..|+++++||+++.+++..+..|.+- +.++.|..+.+ +++||+-|.++++|+-
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf--vt~lDfh~~~p---~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF--VTSLDFHKTAP---YVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce--eEEEecCCCCc---eEEeccccceeeeeec
Confidence 99999 899999999999999999999998888866655 88888877766 9999999999999974
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-35 Score=253.84 Aligned_cols=248 Identities=20% Similarity=0.309 Sum_probs=214.4
Q ss_pred CCCCCCcccCCCCCCCcccccceeecceEEeeEecC----cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC
Q 016224 85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS 160 (393)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~----~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~ 160 (393)
++..-..|....- ........|...+.++.|.|. .+++++.||++++|++.+. .++..|.+|...|..++|+|
T Consensus 195 wsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH~~RVs~VafHP 271 (459)
T KOG0272|consen 195 WSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQDLEGHLARVSRVAFHP 271 (459)
T ss_pred cCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-cchhhhhcchhhheeeeecC
Confidence 3333455655433 222334457889999999976 5778999999999999988 89999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceE--EEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEE
Q 016224 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVG--CMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM 235 (393)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l 235 (393)
+|++|+|++.|.+-++||+++++.+.....+. .+. .+.++|.++++| .|..-+|||+++++.+ .+.+|..+|.++
T Consensus 272 sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V 351 (459)
T KOG0272|consen 272 SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV 351 (459)
T ss_pred CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence 99999999999999999999987766555443 333 334689998886 8889999999999987 889999999999
Q ss_pred EEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224 236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 236 ~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 310 (393)
.|+|+ .|++|+.|++++|||++.. ..+..+.+|..-|..+.++ |.+|+|++.|++++||..+++++++++.
T Consensus 352 ~fsPNGy~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 352 AFSPNGYHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred eECCCceEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc
Confidence 99999 8999999999999999987 5578889999999999987 4589999999999999999999999999
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEE
Q 016224 311 EHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (393)
Q Consensus 311 ~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd 339 (393)
+|.+.|.++.++ +++|++++.|.++++|.
T Consensus 428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999888 67899999999999995
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=224.82 Aligned_cols=262 Identities=19% Similarity=0.305 Sum_probs=216.9
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecC-CceEE-
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLG-GEVGC- 196 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~~~~- 196 (393)
-+++++.|.+|++|.+.+| .+.++++...+.|..+.+.|+++.||+++.. .|++||++++. .+.++..+ ..+..
T Consensus 12 iLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred EEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 4668999999999999999 9999999888999999999999999998875 89999999875 57777766 34433
Q ss_pred -EEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224 197 -MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH 272 (393)
Q Consensus 197 -~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~ 272 (393)
+..+++++++| .||+++|||++.........+..+|+++..+|+ .|+++..+|.|++||+.......+++ ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li---Pe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI---PED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC---CCC
Confidence 44699999987 788999999999777788888999999999998 99999999999999998864322222 222
Q ss_pred eeeEEEEE--EcCCEEEEecCCCcEEEeeCCC------cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224 273 SLAVVSLV--VGANKLYSGSMDNSIRVWNLET------LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD 342 (393)
Q Consensus 273 ~~~v~~l~--~~~~~l~sg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~ 342 (393)
...|.++. +++.+++.+...|..++|++-+ .+++..|+.|...+..+.++ +++|+++|.|.+++||+..+
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 34555555 5688999999999999999865 35677888999999998888 67999999999999999987
Q ss_pred CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
.-++ .+....+...+...+|+.++. ||+||+.|+.+++|+++.++
T Consensus 247 ~~kl-e~~l~gh~rWvWdc~FS~dg~---YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 247 FFKL-ELVLTGHQRWVWDCAFSADGE---YLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceee-EEEeecCCceEEeeeeccCcc---EEEecCCCCceeecccccCc
Confidence 6222 222233445799999988777 99999999999999999886
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.9e-33 Score=229.91 Aligned_cols=244 Identities=20% Similarity=0.329 Sum_probs=217.4
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--E-EEEeCCCEEEEE-cCCeEEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--G-CMISEGPWIFIG-VTNFVKAWN 216 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~-~~~~i~v~d 216 (393)
+..++|++|...|.++.|++|+++|+++|.||.+.|||.-+...++.++.+..- . .+.|.+.++++| .|+...||+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 556899999999999999999999999999999999999999888888887653 2 344789999986 899999999
Q ss_pred CCCC--c-----eeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCE
Q 016224 217 TQTN--T-----DLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANK 285 (393)
Q Consensus 217 ~~~~--~-----~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~ 285 (393)
+.+. + ...+.+|.+.+.++.|-+| .|++++.|.+..+||++++ +....+.+|.+.|.++++. ++.
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCCCe
Confidence 9855 2 1268899999999999888 9999999999999999998 6678899999999999875 578
Q ss_pred EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (393)
Q Consensus 286 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 363 (393)
+++|+.|+..+|||++.+.++++|.+|...|+++.|. |.-+++|+.|++.++||++...++..+.......++.+++|
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 9999999999999999999999999999999999998 67899999999999999999988888877677778999999
Q ss_pred eeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 364 MPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
+..+. +|++|..|.++.+||.-.++
T Consensus 282 S~SGR---lLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 282 SKSGR---LLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccccc---EEEeeecCCceeEeeccccc
Confidence 77655 99999999999999975543
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=250.12 Aligned_cols=271 Identities=19% Similarity=0.311 Sum_probs=230.0
Q ss_pred eecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224 108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (393)
Q Consensus 108 ~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (393)
.+.+|..+.|.++ .+++|+..|.+.+|+... +.....+++|.++|+++.|++++.+++||+.+|.|++|+..-....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 3458899999987 578999999999999743 3445567899999999999999999999999999999998654333
Q ss_pred EEEecC-CceEEEE---eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224 186 GVINLG-GEVGCMI---SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 186 ~~~~~~-~~~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~ 258 (393)
....++ ..+.++. .|.+++.++.|+.|+|||....+.- .+.+|.-.|.++.|+|. ++++++.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 322333 4444443 3677888889999999999887664 78999999999999998 999999999999999999
Q ss_pred CCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCC
Q 016224 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDK 333 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg 333 (393)
+ ..+.++.+|...|+.+.|+ +++|++++.|..++++|+++.+.+.++++|+..++++.|+ ..+|.+|+.||
T Consensus 254 g----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 254 G----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred c----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 8 6788899999999999996 5699999999999999999999999999999999999998 57999999999
Q ss_pred cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
.|..|.+...+.+.. ....++..|.+++|+|-+. +|++|+.|.++++|.-
T Consensus 330 svvh~~v~~~~p~~~-i~~AHd~~iwsl~~hPlGh---il~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGE-IPPAHDGEIWSLAYHPLGH---ILATGSNDRTVRFWTR 379 (464)
T ss_pred ceEEEeccccccccC-CCcccccceeeeeccccce---eEeecCCCcceeeecc
Confidence 999999874443333 3345556799999999877 9999999999999963
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=227.26 Aligned_cols=280 Identities=20% Similarity=0.283 Sum_probs=235.5
Q ss_pred CCcccccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224 99 NSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (393)
Q Consensus 99 ~~~~~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i 176 (393)
..++.....|++.|++++|.|++ +++|+.|..|.+|++....+-...+++|+++|..+.|.+|+..|++++.|.+|+.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 34456677899999999999874 4579999999999977655777889999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCceEEEEe---CCCEEE-EE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC
Q 016224 177 WDCASGQCAGVINLGGEVGCMIS---EGPWIF-IG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG 249 (393)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~---~~~~l~-~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg 249 (393)
||+++|++++.++.+........ -+..++ ++ .|+++++||+++...+.......+++++.|... .+++|+-|+
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 99999999999998877655443 344444 44 778999999999998888888899999999876 999999999
Q ss_pred cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC----cceeeEeccCcc--ceE--EE
Q 016224 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTS--VVM--SL 319 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~--~v~--~l 319 (393)
.|++||++.. .....+.+|...|+.++.+ +.++.+-+.|.++++||++- .+++..+.+|.. .++ ..
T Consensus 197 ~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 197 DIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred ceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 9999999987 6678899999999998875 77999999999999999985 345777776543 333 34
Q ss_pred EEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 320 LCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 320 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
+|+ +.++.+|+.|..+++||......+..+.+|... |..+.|+|..+ +|.+++.|.+|++=++
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs--vn~~~Fhp~e~---iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS--VNEVDFHPTEP---IILSCSSDKTIYLGEI 337 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcCCccee--EEEeeecCCCc---EEEEeccCceeEeecc
Confidence 455 568999999999999999877777777776654 99999999877 9999999999987554
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.2e-33 Score=258.12 Aligned_cols=233 Identities=23% Similarity=0.380 Sum_probs=208.2
Q ss_pred ceEEeeEecCcE--EEecCCCeEEEEECCCC------------------------------cEEEEEecCCcCCEEEEEe
Q 016224 111 DILCRNWVQGNC--MYGEKCKFLHSWTVGDG------------------------------FKLLTQLEGHQKVVSGITL 158 (393)
Q Consensus 111 ~i~c~~~~~~~~--~~g~~dg~i~vwd~~~~------------------------------~~~~~~l~~h~~~I~~i~~ 158 (393)
.++|..|+++.. +.|..|..|++|.+... ....+++.+|+++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 889999998853 45889999999998721 0123567899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEe
Q 016224 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG 238 (393)
Q Consensus 159 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~ 238 (393)
+|+.++|+++|.|++|++|.+.+..++-. ..+|..+|..+.|+
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~-------------------------------------y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVI-------------------------------------YKGHLAPVWDVQFA 502 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEE-------------------------------------ecCCCcceeeEEec
Confidence 99999999999999999999999877643 45899999999999
Q ss_pred CC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224 239 ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS 314 (393)
Q Consensus 239 ~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 314 (393)
|. +||+++.|++-++|..... .+.+.+.+|-..|.|+.|.+ +++++|+.|.+|++||+.+|..++.|.+|.+
T Consensus 503 P~GyYFatas~D~tArLWs~d~~----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHN----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred CCceEEEecCCCceeeeeecccC----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 98 9999999999999988775 77888999999999998875 4899999999999999999999999999999
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 315 VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 315 ~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+|.+++|+ |.+|++|+.|+.|.|||+.++..+..+.+| ...+.++.|+.++. +|++|+.|++|++||+..
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~---vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGN---VLASGGADNSVRLWDLTK 650 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCC---EEEecCCCCeEEEEEchh
Confidence 99999999 889999999999999999999988888888 44599999988776 999999999999999864
No 16
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=242.95 Aligned_cols=232 Identities=25% Similarity=0.410 Sum_probs=208.5
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-ee
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SL 225 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~ 225 (393)
....|.|+.+. ...+++|..|.+|+|||..+.++...+..+ +.+.|+..+.+++++| .|.+|++||.++++.+ .+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHH
Confidence 45789999884 568999999999999999999888877655 6678888888888887 7789999999999998 88
Q ss_pred cCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce
Q 016224 226 SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC 305 (393)
Q Consensus 226 ~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~ 305 (393)
..|...|..+.|++.++++++.|.+|.+||+..... ..+...+.+|...|..+.|+.+++++++.|.+|++|++.+++.
T Consensus 274 ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~ef 352 (499)
T KOG0281|consen 274 IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEF 352 (499)
T ss_pred hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceee
Confidence 899999999999999999999999999999988753 3556778899999999999999999999999999999999999
Q ss_pred eeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224 306 IQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (393)
Q Consensus 306 ~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw 385 (393)
++++.+|...|.|+.+.++++++|+.|.+|++||+..+..+..+.+|.+- |.++.| +.+.|++|+.||+|++|
T Consensus 353 vRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL--vRciRF-----d~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 353 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL--VRCIRF-----DNKRIVSGAYDGKIKVW 425 (499)
T ss_pred ehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHh--hhheee-----cCceeeeccccceEEEE
Confidence 99999999999999999999999999999999999999999999998876 666655 33379999999999999
Q ss_pred eCCce
Q 016224 386 DLPSV 390 (393)
Q Consensus 386 d~~s~ 390 (393)
|+..+
T Consensus 426 dl~aa 430 (499)
T KOG0281|consen 426 DLQAA 430 (499)
T ss_pred ecccc
Confidence 99765
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-31 Score=236.36 Aligned_cols=276 Identities=19% Similarity=0.305 Sum_probs=230.2
Q ss_pred eeecceEEeeEecC---cEEEecCCCeEEEEECCCC-cE--EEEEec------C----CcCCEEEEEecCCCCEEEEEeC
Q 016224 107 VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG-FK--LLTQLE------G----HQKVVSGITLPSGSDKLYSGSK 170 (393)
Q Consensus 107 ~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~-~~--~~~~l~------~----h~~~I~~i~~s~~~~~l~s~s~ 170 (393)
.|+.+|+|.+|+|- .+.+|+.|-..++|++... .. ....|+ + -...|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 37889999999875 3446889999999998741 01 111111 1 2368999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEe-cCCceEEEE--eCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEE
Q 016224 171 DETVRVWDCASGQCAGVIN-LGGEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFA 244 (393)
Q Consensus 171 dg~v~iwd~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~ 244 (393)
||.++||+.. |..+.++. +..++..+- ..|.+|++ +.|+++.+||..+++.. .+.-|..+-..+.|-.+ .|++
T Consensus 256 ~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~t 334 (524)
T KOG0273|consen 256 DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFAT 334 (524)
T ss_pred CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEee
Confidence 9999999986 45555554 456665554 36667776 49999999999999887 45556666578888665 9999
Q ss_pred EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
.+.|+.|+|+.+... .|..++.+|.+.|.++.|+ +.+|++++.|++++||..........+.+|...|..+.|+
T Consensus 335 s~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred cCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence 999999999999877 7889999999999999999 6799999999999999999999999999999999999998
Q ss_pred C-----------CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 323 D-----------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 323 ~-----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
+ ..+++++.|++|++||+..+.++..+..|..+ |.+++|+|++. ++++|+.||.|++|+.++++
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p--VysvafS~~g~---ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP--VYSVAFSPNGR---YLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc--eEEEEecCCCc---EEEecCCCCeeEeccccchh
Confidence 2 47999999999999999999998888777665 99999998877 99999999999999999987
Q ss_pred e
Q 016224 392 I 392 (393)
Q Consensus 392 l 392 (393)
+
T Consensus 486 l 486 (524)
T KOG0273|consen 486 L 486 (524)
T ss_pred e
Confidence 6
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.2e-30 Score=230.51 Aligned_cols=270 Identities=28% Similarity=0.461 Sum_probs=226.4
Q ss_pred eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
.|..+|.|+.|+++ .+++++.+|.|++|++.++ +....+..|...+..+.|++++++|++++.||.|++||+.+++.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 56789999999986 4557888999999999987 67788899999999999999999999999999999999998877
Q ss_pred EEEEecCC-ceEEEE--eCCCEEEEEc-CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224 185 AGVINLGG-EVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 185 ~~~~~~~~-~~~~~~--~~~~~l~~~~-~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~ 257 (393)
+..+..+. .+.++. +++.+++++. ++.|.+|++.+++.. .+..|...+.++.++++ ++++++.++.|++||++
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 77776544 444433 4567888876 999999999977665 66678889999999995 77777779999999998
Q ss_pred cCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCC
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDK 333 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg 333 (393)
.. +....+..|...+.++.++++ .+++++.|+.|++||+++++.+..+..|...+.++.+++ .++++++.|+
T Consensus 166 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 166 TG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred cc----ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 65 445666678888999998754 899999999999999999999999988999999999984 5777777799
Q ss_pred cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
.|++||+.+.+....+..+. ..+..+.|+++.. +|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~---~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGK---RLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccC--CcEEEEEECCCCC---EEEEecCCCeEEecC
Confidence 99999998777666666443 4588999988755 899999999999996
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=227.38 Aligned_cols=274 Identities=21% Similarity=0.344 Sum_probs=233.8
Q ss_pred ceeecceEEeeEecCcE--EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 106 AVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~~~--~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
..|-+-|.|+++.|.+. .+|+.|++|.|||+.++ ++..++.+|...|..+++|+-..||++++.|+.|+.||++..+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 45778999999998864 46999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEecC-CceEEEE--eCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224 184 CAGVINLG-GEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (393)
Q Consensus 184 ~~~~~~~~-~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~ 256 (393)
.++.+..+ ..+.++. +.-..|++ +.|.++++||+++...+ .+.+|..+|..+.+.+- .+++|+.|++|++||+
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 99888765 3444443 45566665 48889999999998877 89999999999999864 9999999999999999
Q ss_pred ccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCC
Q 016224 257 NVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDK 333 (393)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg 333 (393)
+.+ +....+..|...|.+++.++. .|++++.| .|+-|++..+..++.+.+|...|.++... +.++++|+..|
T Consensus 307 ~ag----kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 307 RAG----KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred ccC----ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 998 556778889999999998865 57777766 59999999999999999999999999987 77999999999
Q ss_pred cEEEEEcCCCcceEEEEe------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 334 TIKVWFATDSGNLEVTYT------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 334 ~i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.+.+||.+++...+.... ...+..+.+.+|...+. .|+++..|.+|++|.-.
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~---rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS---RLITGEADKTIKMYKED 439 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCc---eEEeccCCcceEEEecc
Confidence 999999998877665532 22345577777755443 89999999999999753
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-32 Score=217.86 Aligned_cols=245 Identities=20% Similarity=0.281 Sum_probs=215.0
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-eEEE--EeCC-CEEEEEcCCeEEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGCM--ISEG-PWIFIGVTNFVKAWN 216 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~--~~~~-~~l~~~~~~~i~v~d 216 (393)
+.++.+..|+++|..+.|+-+|+|.++++.|.+|++|+...+.+++++..++. +... .+++ ++..+|.|..+.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45678899999999999999999999999999999999999999999987654 3332 2344 455567999999999
Q ss_pred CCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC
Q 016224 217 TQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN 293 (393)
Q Consensus 217 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg 293 (393)
+.+++.. .+.+|..+|+.+.|+.+ .+++|+.|.++++||.++... +|++.+......|.++...+..+++|+.||
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEecccEEEeeccCC
Confidence 9999988 89999999999999988 999999999999999998764 888889888999999999999999999999
Q ss_pred cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (393)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 371 (393)
+++.||++.|+....+-+| +|+++.|+ ++..++++.|++|++.|-.+++.+....+|.....-+..++.....
T Consensus 166 tvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt--- 240 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT--- 240 (307)
T ss_pred cEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce---
Confidence 9999999999887766544 78888887 7899999999999999999999999999988877777777766544
Q ss_pred EEEEEeCCCeEEEEeCCceee
Q 016224 372 VLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 372 ~l~s~s~dg~I~iwd~~s~~l 392 (393)
.+++|++||.|++||+...++
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred eEEeccCCceEEEEEecccee
Confidence 899999999999999987654
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=243.59 Aligned_cols=278 Identities=15% Similarity=0.283 Sum_probs=235.1
Q ss_pred ccceeecceEEeeEecC---cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224 104 NRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 104 ~~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~ 180 (393)
....|...|+++.|.+- -+++++.|+.|+||++-+..++++++.+|..+|.+++|++++..++|++.|+.|++||++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence 34568889999999873 345799999999999987559999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCceEEEE--eCC-CEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224 181 SGQCAGVINLGGEVGCMI--SEG-PWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (393)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~--~~~-~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v 253 (393)
+|+++..+.....+.++- +++ ..+++| .|+.|+.||+++++.+ ....|.+.|..+.|-++ .+++.+.|++++|
T Consensus 289 TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 289 TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred cceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 999999999988877765 344 455554 8999999999999987 77789999999999877 9999999999999
Q ss_pred EEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCC---cceeeEeccCccce--EEEEEc--CCEE
Q 016224 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET---LQCIQTLTEHTSVV--MSLLCW--DQFL 326 (393)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v--~~l~~~--~~~l 326 (393)
|+.+..... +.+.....|+.+...+.++++.+++-+.|+.|.+|.+.. ......|++|...- ..+.|+ +.+|
T Consensus 369 We~~~~v~i-k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l 447 (503)
T KOG0282|consen 369 WENRIPVPI-KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTL 447 (503)
T ss_pred EEcCCCccc-hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence 999887442 344445567888888888899999999999999998754 23345677886554 455666 7899
Q ss_pred EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
++|+.||.+.+||.++.+.+..+..|.. .++.+.|+|..+. .+||++.||.|++||
T Consensus 448 ~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~S--kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 448 CSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPS--KVATCGWDGLIKIWD 503 (503)
T ss_pred EeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcc--eeEecccCceeEecC
Confidence 9999999999999999888888887744 5999999998665 699999999999997
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-30 Score=229.94 Aligned_cols=321 Identities=16% Similarity=0.183 Sum_probs=260.9
Q ss_pred CCCccCCCCcceeeccCCCCCCCCCCCCCCcccCCCCCCCcccccceeecceEEeeEecCcEE--EecCCCeEEEEECCC
Q 016224 61 PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD 138 (393)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~ 138 (393)
|+.|...++.+.....+|.+.+-.|.+++....+...++.....+.+|..+++-..|+|.+.+ +|...|+|+|||...
T Consensus 11 ~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~ 90 (603)
T KOG0318|consen 11 ASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ 90 (603)
T ss_pred cCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC
Confidence 455667777777777788887788999898888888888888889999999999999999765 577889999999876
Q ss_pred C-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEEEEEecCCceEE-EE--eCC--CEEEEEc
Q 016224 139 G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVINLGGEVGC-MI--SEG--PWIFIGV 208 (393)
Q Consensus 139 ~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~-~~--~~~--~~l~~~~ 208 (393)
. .-+..+++.-.++|.+|+|+.|+++|+..+.. |.+.+|| +|..+..+..+..... +. +.. +++.++.
T Consensus 91 ~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sd 168 (603)
T KOG0318|consen 91 KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSD 168 (603)
T ss_pred cceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccC
Confidence 3 23344778888999999999999999888753 4666776 6667777766654432 22 222 2334458
Q ss_pred CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec---CceeeEEEEEEc
Q 016224 209 TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK---GHSLAVVSLVVG 282 (393)
Q Consensus 209 ~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~ 282 (393)
|+.|.+|+-...+.. .+..|...|.++.|+|| +|++++.||+|.+||-.++ +.+..+. +|.+.|.+++|+
T Consensus 169 Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg----e~vg~l~~~~aHkGsIfalsWs 244 (603)
T KOG0318|consen 169 DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG----EKVGELEDSDAHKGSIFALSWS 244 (603)
T ss_pred CCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc----cEEEEecCCCCccccEEEEEEC
Confidence 889999998776655 77889999999999999 9999999999999999888 4445554 899999999997
Q ss_pred C--CEEEEecCCCcEEEeeCCCcceeeEeccCcc---ceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCcc
Q 016224 283 A--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS---VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG 357 (393)
Q Consensus 283 ~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 357 (393)
+ .+|++++.|.+++|||+.+.++++++..... .-..+.|..+.|++.+.+|+|.+++......+..+.+|...
T Consensus 245 PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~-- 322 (603)
T KOG0318|consen 245 PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS-- 322 (603)
T ss_pred CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc--
Confidence 4 5899999999999999999999999874432 33455667899999999999999999998888888888876
Q ss_pred EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 358 v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
++++..+++.. +|++|+.||.|.-|+..+|.-
T Consensus 323 ITaLtv~~d~~---~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 323 ITALTVSPDGK---TIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred eeEEEEcCCCC---EEEeeccCceEEEEecCCccc
Confidence 77777777664 999999999999999998864
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-30 Score=229.15 Aligned_cols=280 Identities=16% Similarity=0.276 Sum_probs=227.4
Q ss_pred cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEec---CCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLE---GHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~---~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~ 179 (393)
..+|...|.|+.|+|++ +++++.||+|.+||-.++ +.+..|. +|++.|.+|+|+||+..|+|++.|.+++|||+
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 34567799999999985 446899999999999999 8888888 89999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCc-----eEEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224 180 ASGQCAGVINLGGE-----VGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAI 251 (393)
Q Consensus 180 ~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I 251 (393)
.+.++++++..... +.++...+.++.++.+|.|.+++......+ .+.+|...|+++..+++ +|++|+.||.|
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 99999999987654 567778888888999999999999988866 88999999999999998 99999999999
Q ss_pred EEEEeccCCcccc-------Cc----------------------------------------------------------
Q 016224 252 LAWKFNVTTNCFE-------PA---------------------------------------------------------- 266 (393)
Q Consensus 252 ~vwd~~~~~~~~~-------~~---------------------------------------------------------- 266 (393)
.-|+...+..... .+
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 9999765422100 00
Q ss_pred ----eeec----------CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce--eeEeccCccceEEEEEc--CCEEEE
Q 016224 267 ----ASLK----------GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTSVVMSLLCW--DQFLLS 328 (393)
Q Consensus 267 ----~~~~----------~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~s 328 (393)
..+. +......++..+++.++.|+.|+.|+||.+....+ ...+..|.+++++++++ +.||++
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence 0000 00111123333467899999999999999987554 33456799999999999 679999
Q ss_pred EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+...+.+.+||+.+.+....... -+...+.+++|+|+.. +++||+-|..|.||++..
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~-FHtakI~~~aWsP~n~---~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWA-FHTAKINCVAWSPNNK---LVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eccCCcEEEEEcccCceecceee-eeeeeEEEEEeCCCce---EEEeccccceEEEEEccC
Confidence 99999999999987665322222 2344699999999877 999999999999999864
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=223.44 Aligned_cols=277 Identities=17% Similarity=0.261 Sum_probs=225.0
Q ss_pred cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
...|+.+++++..+|+. .++|+.|..-++|+..++ ....++.+|+..|+++.|+.+|.+||||+.+|.|+||+..++
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 45688899999999764 447999999999999999 788999999999999999999999999999999999999999
Q ss_pred eEEEEEecC-Cce--EEEEeCCCEEEEE-cCCeEEEEECCCC-ceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224 183 QCAGVINLG-GEV--GCMISEGPWIFIG-VTNFVKAWNTQTN-TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (393)
Q Consensus 183 ~~~~~~~~~-~~~--~~~~~~~~~l~~~-~~~~i~v~d~~~~-~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd 255 (393)
.....+... ..+ ..+.+.+.+|++| .||.+-+|.+..+ ....+.+|..++++=.|.|+ .++++..||+|++|+
T Consensus 139 ~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 888877522 222 3445778888887 8899999999995 44588999999999999998 999999999999999
Q ss_pred eccCCccccCce-----------------eec------------------------------Cceee---EEEEEEcCC-
Q 016224 256 FNVTTNCFEPAA-----------------SLK------------------------------GHSLA---VVSLVVGAN- 284 (393)
Q Consensus 256 ~~~~~~~~~~~~-----------------~~~------------------------------~~~~~---v~~l~~~~~- 284 (393)
+.++....+... .+. .+... |-++.++..
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 988743211110 000 00111 111112222
Q ss_pred -EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC-CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEE
Q 016224 285 -KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC 362 (393)
Q Consensus 285 -~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 362 (393)
+.|+|+.||+|.|||+...++.+.+ .|...|+.+.|.+ .+|++++.+|.|++||.+++..+..+.+|... |+.++
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~--Il~f~ 375 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMG--ILDFA 375 (399)
T ss_pred chhhcccccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchh--eeEEE
Confidence 4788999999999999887765555 4888899999997 89999999999999999999998888888766 88888
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 363 GMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 363 ~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.+|+.. +++|+|.|++.+||+++
T Consensus 376 ls~~~~---~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 LSPQKR---LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCCCc---EEEEecCCCeEEEEecC
Confidence 888665 99999999999999986
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=211.82 Aligned_cols=247 Identities=17% Similarity=0.338 Sum_probs=208.7
Q ss_pred ecceEEeeEecCcE-EEecCCCeEEEEECCCCcE-EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 109 KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK-LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 109 ~~~i~c~~~~~~~~-~~g~~dg~i~vwd~~~~~~-~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
+..|..+...+++. +.+...-.|++||+.++.. ++.++.+|.+.|+++.|..+|+.++||+.||+++|||++...+.+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 44778888887754 4566777999999997644 899999999999999999999999999999999999999999999
Q ss_pred EEecCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224 187 VINLGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 187 ~~~~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~ 259 (393)
.++...++.++. ++...|+++ .++.|++||+...... .+......|.++...++ +++++...|..++|++-..
T Consensus 120 ~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 120 NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 999888886665 444455554 8889999999988544 33445678999999888 9999999999999998764
Q ss_pred Cc--cccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224 260 TN--CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLD 332 (393)
Q Consensus 260 ~~--~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d 332 (393)
.. .++++..++.|...+...-++ .++|++++.|.+++||+.++. +....+++|...+...+|+ +.||++++.|
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence 33 256778888999988877665 569999999999999999987 6677889999999999998 7899999999
Q ss_pred CcEEEEEcCCCcceEEEEeecCC
Q 016224 333 KTIKVWFATDSGNLEVTYTHNEE 355 (393)
Q Consensus 333 g~i~iwd~~~~~~~~~~~~~~~~ 355 (393)
+.+++||+..++.+....+|...
T Consensus 280 ~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred CceeecccccCceeeecCCcccc
Confidence 99999999999888887777655
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-30 Score=213.46 Aligned_cols=240 Identities=24% Similarity=0.364 Sum_probs=200.1
Q ss_pred EEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCC-----CeEEEEEecCCce---EEEEeCCCEEEEE-cCC
Q 016224 141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS-----GQCAGVINLGGEV---GCMISEGPWIFIG-VTN 210 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~ 210 (393)
.+..++++|++.|+.++..+. .+.|++++.|.++.+|++.. |..++.+..+... ..+.+++.+.+++ .|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 566789999999999999775 67899999999999998754 5567777775543 3345788887765 999
Q ss_pred eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecC--ceeeEEEEEEcCC-
Q 016224 211 FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVSLVVGAN- 284 (393)
Q Consensus 211 ~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~- 284 (393)
.+++||+.+++.. .+.+|...|.+++|++| .+++|+.|.+|++|+..... ..++.. +...|.++.|.++
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-----k~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-----KYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-----EEEEecCCCcCcEEEEEEcCCC
Confidence 9999999998665 89999999999999998 99999999999999987642 223322 3788999999865
Q ss_pred ---EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEE
Q 016224 285 ---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359 (393)
Q Consensus 285 ---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 359 (393)
+|++++.|++|++||+++.+...++.+|.+.++.+.++ |..+++|+.||.+.+||+++++.+..+ .+...|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---~a~~~v~ 237 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---EAFDIVN 237 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec---cCCCeEe
Confidence 79999999999999999999999999999999999998 779999999999999999988875443 3445699
Q ss_pred EEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+++|+|... .++...+..|+|||+++..+
T Consensus 238 sl~fspnry----wL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 238 SLCFSPNRY----WLCAATATSIKIWDLESKAV 266 (315)
T ss_pred eEEecCCce----eEeeccCCceEEEeccchhh
Confidence 999988654 55555666799999998754
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=240.86 Aligned_cols=242 Identities=17% Similarity=0.332 Sum_probs=218.5
Q ss_pred EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce---EEEEeCCCEEEEE-cCCeEEEEECC
Q 016224 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV---GCMISEGPWIFIG-VTNFVKAWNTQ 218 (393)
Q Consensus 143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~i~v~d~~ 218 (393)
.+++..|+..|.++.|+|....++++-..|.|.|||.++...++.+...... ..+....+++++| .|..|++|+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 3456679999999999999999999999999999999999999998865433 3355678888888 55699999999
Q ss_pred CCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCC
Q 016224 219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMD 292 (393)
Q Consensus 219 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~d 292 (393)
+.+.+ .+..|.+.|.+++.+|. ++++++.|-.|++||.+.. +.+.+.+.+|...|+++++++ +.|++++-|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 99888 88999999999999998 9999999999999999876 477899999999999999974 589999999
Q ss_pred CcEEEeeCCCcceeeEeccCccceEEEEEc-C---CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW-D---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
++|+||.+.+..+..++++|...|+++.+. + .+|++|+.|.+|+|||..+..+++.+.+|... |..++|+|.-+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N--vs~v~fhp~lp 240 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN--VSFVFFHPELP 240 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc--ceEEEecCCCc
Confidence 999999999999999999999999999998 3 39999999999999999999999999988876 88899999888
Q ss_pred CCcEEEEEeCCCeEEEEeCCceee
Q 016224 369 GKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+|++|++||+|+||+-.|.++
T Consensus 241 ---iiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 241 ---IIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred ---EEEEecCCccEEEecCcceeh
Confidence 999999999999999988764
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-29 Score=208.10 Aligned_cols=277 Identities=22% Similarity=0.333 Sum_probs=222.7
Q ss_pred cceeecceEEeeEecCc---EEEecCCCeEEEEECCCC--cEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224 105 RAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDG--FKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~--~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd 178 (393)
...|+..+..++|++.. +++++.|+.|++|+...+ +.+...+ .+|+..|.+++|+|.|++|+++|.|.++.||.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 34566689999999983 668999999999998742 3555555 47999999999999999999999999999998
Q ss_pred CCCC--eEEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee----eecCCCCcEEEEEEeC--CEEEEEe
Q 016224 179 CASG--QCAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGN--DLLFAGT 246 (393)
Q Consensus 179 ~~~~--~~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~--~~l~~~~ 246 (393)
-..+ +++.+++.+ .++.++ ..+|.+|++. .|+.|-+|.+..+..+ .++.|...|..+.|+| ++|++++
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 7654 677777765 455554 4688898875 7889999999866654 7889999999999999 4999999
Q ss_pred CCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC
Q 016224 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ 324 (393)
Q Consensus 247 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 324 (393)
.|.+|++|+-.. ...+++...+.+|...|.+++|+ |..|++++.|++|+||-..+.- -..|...+..+.|...
T Consensus 170 YDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~~~ 244 (312)
T KOG0645|consen 170 YDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWDNG 244 (312)
T ss_pred cCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeeccc
Confidence 999999998775 45578899999999999999997 5699999999999999865211 1237788999999988
Q ss_pred EEEEEeCCCcEEEEEcCCC---cceEEE--EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 325 FLLSCSLDKTIKVWFATDS---GNLEVT--YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 325 ~l~s~s~dg~i~iwd~~~~---~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.|++++.|+.|++|.-... .....+ ..+.++..|.++.|.|... ..|++++.||.|++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~--~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS--NRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC--CceeecCCCceEEEEEec
Confidence 9999999999999976532 111111 1233444699999999422 379999999999999975
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=5e-31 Score=225.26 Aligned_cols=241 Identities=27% Similarity=0.460 Sum_probs=207.0
Q ss_pred cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEE--EEeCCCEEEE-EcCCeEEEE
Q 016224 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGC--MISEGPWIFI-GVTNFVKAW 215 (393)
Q Consensus 140 ~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~-~~~~~i~v~ 215 (393)
+++.+.+++|.+.|.|+++.|..+.|+||+.|++++|||+.+|+...++..+- .+.. +..-..++++ +.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 57778899999999999999999999999999999999999999998888543 3333 3345667775 588899999
Q ss_pred ECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEec
Q 016224 216 NTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS 290 (393)
Q Consensus 216 d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~ 290 (393)
|++.++.+ ...+|-..|.+++.+|. .|++++.|.++++||+++. ..+..+.+|...|..+.+. .-.+++|+
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----ASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc----ceEEEecCCCCcceeEEeecCCCceEEec
Confidence 99999988 78999999999999986 9999999999999999997 6678899999999999887 55899999
Q ss_pred CCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
.|++|++||++.++-..++..|...|.+++.+++ .+++++.| .|+-|++..+..+..+.+|..- +.++....|
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~i--intl~~nsD-- 371 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAI--INTLSVNSD-- 371 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccce--eeeeeeccC--
Confidence 9999999999999999999999999999999854 56666655 7999999998888777766655 555544332
Q ss_pred CCcEEEEEeCCCeEEEEeCCcee
Q 016224 369 GKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
+ ++++|++.|.|.+||.++|-
T Consensus 372 -~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 372 -G-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -c-eEEEcCCceEEEEEecCcCc
Confidence 2 89999999999999998863
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=241.16 Aligned_cols=275 Identities=23% Similarity=0.423 Sum_probs=226.9
Q ss_pred eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcE--EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC-CC
Q 016224 107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFK--LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC-AS 181 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~--~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~-~~ 181 (393)
.+...|+|+.|++++ +++++.++.+++|+.... + +++.+.+|...|.+++|+|+++++++++.|++|+|||+ ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI-KSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccc-cchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 346799999999774 446889999999999766 5 77788999999999999999999999999999999999 55
Q ss_pred CeEEEEEecCCc-eEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224 182 GQCAGVINLGGE-VGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (393)
Q Consensus 182 ~~~~~~~~~~~~-~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw 254 (393)
+.+++++..+.. +.+ +.+.++++++| .|++|++||+++++.. .+.+|.+.|++++|+++ +|++++.|+.|++|
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 588888876644 333 34577777776 8889999999998877 89999999999999998 99999999999999
Q ss_pred EeccCCccccCceeecCcee--eEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEE---EEc--CCE
Q 016224 255 KFNVTTNCFEPAASLKGHSL--AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL---LCW--DQF 325 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~--~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l---~~~--~~~ 325 (393)
|+.++... +...+..+.. .+.++.++ +.++++++.|+.+++||+..+..+..+.+|...+.++ ... +.+
T Consensus 316 d~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 316 DLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred ECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99987521 2344444433 47788775 6699999999999999999999999999988864333 112 779
Q ss_pred EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe--CCCeEEEEeCC
Q 016224 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC--NDNSVRFYDLP 388 (393)
Q Consensus 326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s--~dg~I~iwd~~ 388 (393)
+++|+.|+.|++||+.+...+..+..|. ...+..+.+++... ++++++ .|+.|++|..+
T Consensus 394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~---~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTEN---LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcC---eeeecCcCCCceEEEecCC
Confidence 9999999999999999888888877774 44578888888766 888888 69999999865
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=232.95 Aligned_cols=274 Identities=21% Similarity=0.356 Sum_probs=217.3
Q ss_pred cceEEeeEe--cCcEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 110 TDILCRNWV--QGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 110 ~~i~c~~~~--~~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
.+|..+.|+ .+-+.+|+ .=|.+-||+..+. ..+...++|...|++++++|||+++|||+.||.|+|||..++-|..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 466667776 33444544 4589999999988 8888999999999999999999999999999999999999999999
Q ss_pred EEecCCce---EEEEeCCCEEEE-EcCCeEEEEECCCCceeeecCC--CCcEEEEEEeCC--EEEEEeCCC-cEEEEEec
Q 016224 187 VINLGGEV---GCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGP--VGQVYAMAVGND--LLFAGTQDG-AILAWKFN 257 (393)
Q Consensus 187 ~~~~~~~~---~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~~~~~~--~~~v~~l~~~~~--~l~~~~~dg-~I~vwd~~ 257 (393)
+|..+... ..+...++.+++ +.||+|+.||+...+....... ..+..+++.+|. ++.+|+.|. .|++|+++
T Consensus 387 TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 99876543 233456776665 5999999999999887733333 345567777754 777777776 49999999
Q ss_pred cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW--DQFLLSCSLD 332 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~--~~~l~s~s~d 332 (393)
++ +++..+.+|.++|.+++++ ++.|++++.|.+|++||+-... .+.++. +...+..++|. |+.|+++..|
T Consensus 467 TG----qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 467 TG----QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred cC----eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEec
Confidence 98 6788899999999987765 7799999999999999986542 344444 66678888887 8899999999
Q ss_pred CcEEEEEcCCCcceEEEEe------------------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 333 KTIKVWFATDSGNLEVTYT------------------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 333 g~i~iwd~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
|.|.+||+....+...+.+ .......+.+++++|+. +|++|+....|++|+++++-|
T Consensus 542 gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~---~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 542 GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK---CILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred ceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC---EEEecCCcccEEEEECchhhe
Confidence 9999999987655432221 11224578899988876 999999999999999998754
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.3e-29 Score=231.65 Aligned_cols=279 Identities=16% Similarity=0.264 Sum_probs=223.8
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
...|...++|+++++| .+++|+.||+|+|||...+ -++.++..|++.|+.+.|+..++.|++.+.||+|+.||+...
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 4456779999999999 4668999999999999999 788899999999999999999999999999999999999999
Q ss_pred eEEEEEecCCceE--EEE--eCCCEEEEEc-CC-eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224 183 QCAGVINLGGEVG--CMI--SEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (393)
Q Consensus 183 ~~~~~~~~~~~~~--~~~--~~~~~l~~~~-~~-~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v 253 (393)
+..+++..+.++. ++. +.|.++++|. |. .|.+|++++|+.+ .+.+|.++|.+++|++. .|++++.|.+|++
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 9999999887764 344 4588888884 43 8999999999999 89999999999999987 9999999999999
Q ss_pred EEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc--------------------
Q 016224 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE-------------------- 311 (393)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-------------------- 311 (393)
||+-..... ..+ ..+...+..+++. |+.|++++.||.|.+||...+..+.++.+
T Consensus 505 W~if~s~~~---vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 505 WDIFSSSGT---VET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEeeccCce---eee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 999776322 222 2345566666665 78999999999999999987665544422
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe--------------------------------------
Q 016224 312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT-------------------------------------- 351 (393)
Q Consensus 312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------------------------------- 351 (393)
.....+.++++ |.+|++|+....|+|||+.++-.+..+..
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i 660 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI 660 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence 12356777776 88999999999999999986543322110
Q ss_pred ----------------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 352 ----------------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 352 ----------------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
....+.+..+.|+|.+. -++.++..| |.||.+.+.-+
T Consensus 661 ~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgr---aFAaatTEG-l~IYsld~~~~ 713 (893)
T KOG0291|consen 661 DIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGR---AFAAATTEG-LLIYSLDTTIL 713 (893)
T ss_pred cccCCccccCCccccccCceEEEEEEEECCCcC---eeeeecccc-eEEEecCCceE
Confidence 00134577888888765 788888776 78888876654
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=238.84 Aligned_cols=269 Identities=21% Similarity=0.356 Sum_probs=222.7
Q ss_pred ecceEEeeEec---CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-
Q 016224 109 KTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC- 184 (393)
Q Consensus 109 ~~~i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~- 184 (393)
...|+.+.|.. +.++.++..+.+++|+..+. .+ ..+.+|+..|.++....+|.+|+||+.|.++++|.++++..
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTS-YC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCC-ce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 34677777764 46778999999999998876 33 37899999999999767788999999999999998855432
Q ss_pred ---EEEEecC-CceEEEEe---CCCEEE-EEcCCeEEEEECCCCce----e------eecCCCCcEEEEEEeCC--EEEE
Q 016224 185 ---AGVINLG-GEVGCMIS---EGPWIF-IGVTNFVKAWNTQTNTD----L------SLSGPVGQVYAMAVGND--LLFA 244 (393)
Q Consensus 185 ---~~~~~~~-~~~~~~~~---~~~~l~-~~~~~~i~v~d~~~~~~----~------~~~~~~~~v~~l~~~~~--~l~~ 244 (393)
+.....+ ..+.++.. ...+++ ++.|.++++|++...+. . ....|...|++++++|+ +++|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 2222222 33333331 233444 45899999999987321 1 33569999999999998 9999
Q ss_pred EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
|+.|.+.++|++... .....+.+|...|.++.|+++ .++|++.|++|+||.+.++.++++|.+|...|....|-
T Consensus 481 ~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI 556 (775)
T ss_pred cccccceeeecccCc----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee
Confidence 999999999999954 778999999999999999865 89999999999999999999999999999999998887
Q ss_pred --CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 323 --DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 323 --~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
+..|++++.||-|+||++++..+...+-.|... |.++.-++... +++||+.||.|.+|.=.
T Consensus 557 ~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr--vWaL~~~~~~~---~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 557 RNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR--VWALSVSPLLD---MFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eCCcEEEeccCCCcEEEEeccchhhhhhhhhccce--eEEEeecCccc---eeEecCCCeEEEEeecC
Confidence 789999999999999999999999998888765 88888887766 89999999999999743
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-30 Score=223.18 Aligned_cols=276 Identities=18% Similarity=0.254 Sum_probs=227.0
Q ss_pred cceeecceEEeeEecCc--EEEecCCCeEEEEECC--CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~--~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~ 180 (393)
...|.++|.-+.|++++ +++++.|.+..+|++. ..+++.+++.+|..+|..|.||||.++|++++.|..+.+||+.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence 45678899999999885 4578999999999875 3367889999999999999999999999999999999999999
Q ss_pred CCeEEEEEecC--Cc--eEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCC-CCcEEEEEEeCC--EEEEEeCCCcEE
Q 016224 181 SGQCAGVINLG--GE--VGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP-VGQVYAMAVGND--LLFAGTQDGAIL 252 (393)
Q Consensus 181 ~~~~~~~~~~~--~~--~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~-~~~v~~l~~~~~--~l~~~~~dg~I~ 252 (393)
+|.+...+... .. ..++.+++..+++| .|+.+..||+..+..-...+. ...|.+++..+| ++++.+.|..|+
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 99998888765 22 34566899888887 788999999998776554443 356899998887 888888999999
Q ss_pred EEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEE--EEc---CCE
Q 016224 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL--LCW---DQF 325 (393)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l--~~~---~~~ 325 (393)
+++..+... ..+.....+|++++.+ +.++++.-.+..|++||++..+.+..+.+|...-.-+ +|- ..+
T Consensus 380 l~~~e~~~d-----r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 380 LYNREARVD-----RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred eechhhhhh-----hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 999887532 1123344567777765 6688888899999999999999999999988654333 343 369
Q ss_pred EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+++||+|++|+||+..+++.+..+.+|... |.+++|.|..+ .++|++++||+|+||....
T Consensus 455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~--vNcVswNP~~p--~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLLAVLSGHSKT--VNCVSWNPADP--EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCceEEEEEccCCceeEeecCCcce--eeEEecCCCCH--HHhhccCCCCeEEEecCCc
Confidence 999999999999999999999999998865 89999998755 4899999999999998753
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=229.35 Aligned_cols=266 Identities=17% Similarity=0.282 Sum_probs=224.6
Q ss_pred eecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224 108 IKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (393)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (393)
+...|-|+.+.|.. .+.+-..|.|.|||.++. ..++.++-..-+|.+..|-...+.+++|+.|..|+||++.+++.+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence 55688999999886 446889999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEecCCce-EEE--EeCCCEEEEEc-CCeEEEEECCCCce--eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEe
Q 016224 186 GVINLGGEV-GCM--ISEGPWIFIGV-TNFVKAWNTQTNTD--LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKF 256 (393)
Q Consensus 186 ~~~~~~~~~-~~~--~~~~~~l~~~~-~~~i~v~d~~~~~~--~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~ 256 (393)
..|..+... .++ .|...++++++ |-.|++||-+..=. ..+.+|...|.+++|+|+ .+++++-|++|++|.+
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 999987654 333 36777777764 55999999987643 388999999999999986 9999999999999999
Q ss_pred ccCCccccCceeecCceeeEEEEEEc-CC---EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEe
Q 016224 257 NVTTNCFEPAASLKGHSLAVVSLVVG-AN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCS 330 (393)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~l~~~-~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s 330 (393)
.+. .+..++.+|...|.++.+- +. +|++|+.|.+|+|||.++.+|++++.+|...|..+.|.+. .+++|+
T Consensus 171 gs~----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 171 GSP----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred CCC----CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 887 6778899999999999984 22 8999999999999999999999999999999999999975 799999
Q ss_pred CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEE
Q 016224 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383 (393)
Q Consensus 331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~ 383 (393)
.||+++||+..+-+....+.... ..+.+++..+.+. .++.|.+.|.|.
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~---~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDG---KIAVGFDEGSVT 294 (794)
T ss_pred CCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCC---eEEEeccCCcEE
Confidence 99999999987655443333322 2477776655433 577777777654
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.3e-28 Score=247.01 Aligned_cols=274 Identities=16% Similarity=0.208 Sum_probs=215.2
Q ss_pred eeecceEEeeEecCc--EEEecCCCeEEEEECCCCc-------EEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEE
Q 016224 107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRV 176 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~-------~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~i 176 (393)
.|...|.+++|++++ +++|+.|+.|+||+..+.. .....+. +...|.+++|++ ++.+|++++.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 367789999999764 5689999999999975320 1223344 356899999987 5789999999999999
Q ss_pred EECCCCeEEEEEecC-CceEEEE--e-CCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCC
Q 016224 177 WDCASGQCAGVINLG-GEVGCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQD 248 (393)
Q Consensus 177 wd~~~~~~~~~~~~~-~~~~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d 248 (393)
||+.+++.+..+..+ ..+.++. + ++.+|+++ .|+.|++||+.++..+....+...|.++.|.+. +|++|+.|
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence 999999988888654 3454443 2 56677665 789999999998877743344568999999542 99999999
Q ss_pred CcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCC------cceeeEeccCccceEEEEE
Q 016224 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLET------LQCIQTLTEHTSVVMSLLC 321 (393)
Q Consensus 249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~ 321 (393)
+.|++||++... .+...+.+|...|.++.|. +.+|++++.|++|++||++. .+++.++.+|...+..+.+
T Consensus 640 g~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 640 HKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 999999998753 3456677899999999885 67899999999999999974 3578889999999988888
Q ss_pred c--CCEEEEEeCCCcEEEEEcCCCcceEEEE-----------eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 322 W--DQFLLSCSLDKTIKVWFATDSGNLEVTY-----------THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 322 ~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
+ +.+|++|+.|+.|++|+........... .......+.+++|++++. +|++|+.||.|+||++
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~---~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS---TLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC---eEEEecCCCcEEEEec
Confidence 7 6799999999999999986553332211 112234589999988766 8999999999999997
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5e-29 Score=201.90 Aligned_cols=271 Identities=20% Similarity=0.294 Sum_probs=218.7
Q ss_pred eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
-++.+|..+.|+-+ .+++.+.|.+|++|+...+ .+++++.+|..+|..++.+.|...+++|+.|..|.+||+++|+.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV 93 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCee
Confidence 35668999999855 5678999999999999999 99999999999999999999999999999999999999999999
Q ss_pred EEEEecCC-ceEEEEe--CCCEEEEE-cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEec
Q 016224 185 AGVINLGG-EVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257 (393)
Q Consensus 185 ~~~~~~~~-~~~~~~~--~~~~l~~~-~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~ 257 (393)
++.+..+. .+..+.. +...+++| .|..+++||.+..... .+....+.|.++......+++|+.||+++.||++
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEee
Confidence 99998764 4444433 45566655 8899999999876543 5566788999999999999999999999999999
Q ss_pred cCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc----CCEEEEEeCCC
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW----DQFLLSCSLDK 333 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~----~~~l~s~s~dg 333 (393)
.+. +.....+|.....+++.+++..++++.|++|++.|-.+|++++.+++|...-..+.+. ...+++|++||
T Consensus 174 ~G~----l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 174 KGT----LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred cce----eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc
Confidence 984 3344455544444444468899999999999999999999999999998876555443 56899999999
Q ss_pred cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
.|.+||+.+...+..+.. .....+..+.++|..+ -|+++. ++.+.+|.-
T Consensus 250 ~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~---~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMD---DFITAT-GHGDLFWYQ 298 (307)
T ss_pred eEEEEEeccceeeeeecc-CCceeEEeeecccCcc---ceeEec-CCceeceee
Confidence 999999987766655544 3344588899998766 455554 345566643
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.7e-30 Score=208.78 Aligned_cols=235 Identities=17% Similarity=0.263 Sum_probs=195.8
Q ss_pred ecceEEeeEecC---cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeE
Q 016224 109 KTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 109 ~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
...+..++|++. .+++++.||.+++||+.....+++.+++|+.+|.++.|++ ..+.++++|.|++||+|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 346778888754 5668999999999998766689999999999999999987 567788889999999999987776
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCc
Q 016224 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN 261 (393)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~ 261 (393)
+.++ .+|...|....|+|. ++++++.|+.+++||++...
T Consensus 140 v~Tf-------------------------------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g- 181 (311)
T KOG0277|consen 140 VQTF-------------------------------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG- 181 (311)
T ss_pred eEee-------------------------------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-
Confidence 6554 578889999999876 99999999999999998873
Q ss_pred cccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEcC---CEEEEEeCCCc
Q 016224 262 CFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKT 334 (393)
Q Consensus 262 ~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~ 334 (393)
+.+ .+..|...+.+..|+ .+.++||+.|+.|++||+++ ..++.++.+|.-.|..+.|++ ..|++++.|-+
T Consensus 182 --k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 182 --KFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred --cee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 333 378899999999885 67899999999999999987 457889999999999999995 58999999999
Q ss_pred EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 335 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
++|||............+.. .-+..+.|++..++ ++++.+.|+.++||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~Ht-EFv~g~Dws~~~~~--~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHT-EFVCGLDWSLFDPG--QVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccc-eEEeccccccccCc--eeeecccccceeeecc
Confidence 99999975544333333222 24778888887443 8999999999999984
No 39
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-28 Score=223.73 Aligned_cols=267 Identities=21% Similarity=0.341 Sum_probs=228.0
Q ss_pred eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-
Q 016224 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL- 190 (393)
Q Consensus 112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~- 190 (393)
..-+.|+..+.+..+.+..|++|+..++ +.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+..
T Consensus 180 ~nlldWss~n~laValg~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 180 LNLLDWSSANVLAVALGQSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hhHhhcccCCeEEEEecceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 3446788888888888889999999988 55555555589999999999999999999999999999999998888877
Q ss_pred -CCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcccc
Q 016224 191 -GGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE 264 (393)
Q Consensus 191 -~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~ 264 (393)
...+.++.-....+.+| .++.|..+|++..+.. .+.+|..+|..+.|+++ +|++|+.|+.+.|||.... +
T Consensus 259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~ 334 (484)
T KOG0305|consen 259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----E 334 (484)
T ss_pred cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc----c
Confidence 45567777777777776 7889999999988766 48889999999999998 9999999999999999554 7
Q ss_pred CceeecCceeeEEEEEEcC---CEEEEec--CCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEE--eCCCcE
Q 016224 265 PAASLKGHSLAVVSLVVGA---NKLYSGS--MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSC--SLDKTI 335 (393)
Q Consensus 265 ~~~~~~~~~~~v~~l~~~~---~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~--s~dg~i 335 (393)
+...+..|...|.+++|++ +.||+|+ .|+.|++||..+++.+..+. -...|.+|.|+.. -|+++ ..++.|
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 7888999999999999974 5788866 69999999999999998886 4568999999943 24443 347789
Q ss_pred EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
.||+..+...+..+.+|... |+.++++|++. .|++|+.|.++++|++-.
T Consensus 414 ~lw~~ps~~~~~~l~gH~~R--Vl~la~SPdg~---~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELLGHTSR--VLYLALSPDGE---TIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEeccccceeeeecCCcce--eEEEEECCCCC---EEEEecccCcEEeccccC
Confidence 99999998888888887765 99999999876 899999999999999854
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-28 Score=211.11 Aligned_cols=274 Identities=20% Similarity=0.279 Sum_probs=213.9
Q ss_pred cccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC---CCCEEEEEeCCCcEEEEEC
Q 016224 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS---GSDKLYSGSKDETVRVWDC 179 (393)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~---~~~~l~s~s~dg~v~iwd~ 179 (393)
.....|+.-|..++-.+..+++|+.||.+++||.. | +...++.+|.++|.+++|.- ....|++++.|.++++|.+
T Consensus 99 l~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLK-G-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cccccchhhhhhhcccCceEEEeecCCeeEEEecC-C-ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 34445666667777777889999999999999975 4 68889999999999999843 3346999999999999999
Q ss_pred CCCeEEEEE-----ecCCceEEEE--eCCCEEEE-EcCCeEEEEECCCCc--------------------------eeee
Q 016224 180 ASGQCAGVI-----NLGGEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNT--------------------------DLSL 225 (393)
Q Consensus 180 ~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~--------------------------~~~~ 225 (393)
+.++..... .+...+.++. +++..+++ +.|..|.+|+..+.. .+.+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 877543222 2334454444 46666655 499999999932211 2377
Q ss_pred cCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224 226 SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (393)
Q Consensus 226 ~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~ 302 (393)
.+|..+|.++.|++. .+++++.|.+|+.||+.++.. ...+. -.....+++.. .++|++|+.|..|++||.++
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccc----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 899999999999887 999999999999999999843 33333 23456677765 45899999999999999997
Q ss_pred cc---eeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224 303 LQ---CIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (393)
Q Consensus 303 ~~---~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 375 (393)
+. ..++|.+|...|.++.|+ ..+|++++.|+++++||+++.. .+..+.+|.. .++++.|... .+|++
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~~~----~~IvS 405 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWNEG----GLIVS 405 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEeccCC----ceEEe
Confidence 53 467889999999999999 3589999999999999999877 6777777654 5999988642 27999
Q ss_pred EeCCCeEEEEeCCc
Q 016224 376 SCNDNSVRFYDLPS 389 (393)
Q Consensus 376 ~s~dg~I~iwd~~s 389 (393)
|+.|.+|+|+.-..
T Consensus 406 GGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 406 GGADNKLRIFKGSP 419 (423)
T ss_pred ccCcceEEEecccc
Confidence 99999999997543
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=223.91 Aligned_cols=232 Identities=22% Similarity=0.369 Sum_probs=200.7
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCceEE--EEeCCCEEEEE-cCCeEEEEECCCCceee
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLS 224 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~ 224 (393)
-+.+|..|.|.|+|+.|++|+..|.+.+|+..+-.....++. ...+.+ +.+++.++++| .++.|++|+...+....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 457899999999999999999999999999743222222222 233433 45789999988 66799999999888876
Q ss_pred ecCCC-CcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEee
Q 016224 225 LSGPV-GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWN 299 (393)
Q Consensus 225 ~~~~~-~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd 299 (393)
+..|. ..|.+++|+|+ .|++++.||+|+|||.... +....+.+|.-.|.++.|.+. +|++++.|..|++||
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC----chhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 66665 89999999987 9999999999999999887 445667899999999999865 799999999999999
Q ss_pred CCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224 300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377 (393)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s 377 (393)
.++++++.++..|+..|..+.|. +++|+++|.|..++++|+++.+.+..+..|..+ ++++.|+|-.++ +|.+|+
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd--v~~~~WhP~~~~--lftsgg 326 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD--VTSLTWHPLNES--LFTSGG 326 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh--heeecccccccc--ceeecc
Confidence 99999999999999999999998 679999999999999999988888888888877 999999998765 899999
Q ss_pred CCCeEEEEeCC
Q 016224 378 NDNSVRFYDLP 388 (393)
Q Consensus 378 ~dg~I~iwd~~ 388 (393)
.||.|..|.+.
T Consensus 327 ~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 327 SDGSVVHWVVG 337 (464)
T ss_pred CCCceEEEecc
Confidence 99999999987
No 42
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=5.1e-29 Score=232.83 Aligned_cols=197 Identities=18% Similarity=0.319 Sum_probs=180.5
Q ss_pred cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
...|.++|+...|+|+. +++++.|+++++|.+.+. ..+-.+++|..+|.++.|+|-|-|+||+|.|++.++|.....
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 45688999999999885 457999999999999997 888899999999999999999999999999999999998876
Q ss_pred eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~ 260 (393)
+..+. +.+|...|.|+.|+|+ ++++|+.|.+|++||+.++
T Consensus 526 ~PlRi-------------------------------------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G- 567 (707)
T KOG0263|consen 526 KPLRI-------------------------------------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG- 567 (707)
T ss_pred Cchhh-------------------------------------hcccccccceEEECCcccccccCCCCceEEEEEcCCC-
Confidence 65544 3588999999999999 9999999999999999998
Q ss_pred ccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEE
Q 016224 261 NCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK 336 (393)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~ 336 (393)
..++.+.+|..+|.+++++ |.+|++|+.|+.|.+||+.+++++..+.+|++.|.++.|+ |..|++|+.|.+|+
T Consensus 568 ---~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 568 ---NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred ---cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence 5578889999999999986 6799999999999999999999999999999999999998 88999999999999
Q ss_pred EEEcCCC
Q 016224 337 VWFATDS 343 (393)
Q Consensus 337 iwd~~~~ 343 (393)
+||+...
T Consensus 645 lWD~~~~ 651 (707)
T KOG0263|consen 645 LWDLTKV 651 (707)
T ss_pred EEEchhh
Confidence 9998654
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.1e-28 Score=224.23 Aligned_cols=268 Identities=18% Similarity=0.284 Sum_probs=224.0
Q ss_pred cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEe-cCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE
Q 016224 119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM 197 (393)
Q Consensus 119 ~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~-s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 197 (393)
....++...|..+.++|.++. ++.+.+-|..+.|.+|+| -|+.++||.++..+.++++++.+..+.-...+.+.+.++
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL 371 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSL 371 (775)
T ss_pred cCceEEEEccceEEEEEcccc-EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeee
Confidence 456778889999999999888 999999999999999999 678899999999999999999988877333333445555
Q ss_pred E--eCCCEEEEE-cCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc--
Q 016224 198 I--SEGPWIFIG-VTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE-- 264 (393)
Q Consensus 198 ~--~~~~~l~~~-~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~-- 264 (393)
. ..|.+++++ .|+++++|.++.+... ...+|...|.+++++.. +|++++.|.+|++|++........
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~ 451 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI 451 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence 4 567677765 8889999988544322 56789999999999654 999999999999999987332211
Q ss_pred ---CceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEE
Q 016224 265 ---PAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKV 337 (393)
Q Consensus 265 ---~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~i 337 (393)
.......|...|.+++..+ .+++||+.|.+.+||+++..+...++.+|...|.++.|+ ++.++|+|.|++|+|
T Consensus 452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 1123456888898888764 489999999999999999999999999999999999999 569999999999999
Q ss_pred EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
|.+.+..++..+.+|... |....|..++. .|++++.||.|++|++.+.++
T Consensus 532 W~is~fSClkT~eGH~~a--Vlra~F~~~~~---qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSA--VLRASFIRNGK---QLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred EEeccceeeeeecCccce--eEeeeeeeCCc---EEEeccCCCcEEEEeccchhh
Confidence 999999999999888765 88888887665 899999999999999998754
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.6e-28 Score=229.81 Aligned_cols=239 Identities=29% Similarity=0.491 Sum_probs=217.8
Q ss_pred cceeecceEEeeEe--cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 105 RAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 105 ~~~~~~~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
-..|.+.|.++++. .+.+++|+.|.++++||..++ ++.+.+.+|.+.|.++... ..++++|+.|.+|++|++.++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc
Confidence 34578899999998 778899999999999999999 9999999999999998875 457888999999999999999
Q ss_pred eEEEEEe-cCCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC-CEEEEEeCCCcEEEEEecc
Q 016224 183 QCAGVIN-LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-DLLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 183 ~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~-~~l~~~~~dg~I~vwd~~~ 258 (393)
.++..+. +...+.++..++.++++| .|+.|++|++.+++.+ .+.+|...|+++.+.+ +.+++|+.|+.|++||+++
T Consensus 322 ~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred ceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCc
Confidence 9999999 777888888888888876 8889999999999988 8999999999999999 7999999999999999998
Q ss_pred CCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcCCEEEEEeCCCcEEE
Q 016224 259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKV 337 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~i 337 (393)
.. +++..+.+|..-+..+.+.+++|++++.|++|++||..++++++++.+ |...|.++......+++++.|+++++
T Consensus 402 ~~---~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 402 KR---KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKL 478 (537)
T ss_pred hh---hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEE
Confidence 64 567889999999999999999999999999999999999999999998 67889999888788999999999999
Q ss_pred EEcCCCcceEEE
Q 016224 338 WFATDSGNLEVT 349 (393)
Q Consensus 338 wd~~~~~~~~~~ 349 (393)
||++++.....+
T Consensus 479 ~dl~~~~~~~~l 490 (537)
T KOG0274|consen 479 WDLRSGTLIRTL 490 (537)
T ss_pred EecccCchhhhh
Confidence 999988776655
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=6.8e-28 Score=201.83 Aligned_cols=242 Identities=22% Similarity=0.405 Sum_probs=195.4
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCC-ceEEE--EeCCCEEE-EEcCCeEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGG-EVGCM--ISEGPWIF-IGVTNFVKAW 215 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~-~~~~~--~~~~~~l~-~~~~~~i~v~ 215 (393)
.++..+.+|++.|..+.|+|+|.+||||+.|..|.+|++.. -+-...++.+. .+..+ ..++..++ +|.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 44567789999999999999999999999999999999643 23334444333 33222 24666665 5699999999
Q ss_pred ECCCCcee-eecCCCCcEEEEEEeC---CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe
Q 016224 216 NTQTNTDL-SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG 289 (393)
Q Consensus 216 d~~~~~~~-~~~~~~~~v~~l~~~~---~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg 289 (393)
|+++++.. ....|...|+++.... .++.+++.|+++++||++.. +.++.+. ....++++.|. ++.+++|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k----~~~~t~~-~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK----EAIKTFE-NKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc----chhhccc-cceeEEEEEecccccceeec
Confidence 99999988 8889999999988543 28999999999999999986 4444443 45677888886 5689999
Q ss_pred cCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC----cceEEEEee--cCCccEEEE
Q 016224 290 SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS----GNLEVTYTH--NEEHGVLAL 361 (393)
Q Consensus 290 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~--~~~~~v~~~ 361 (393)
+-|+.|++||++......++.+|..+|+.+..+ +.++++-+.|.++++||++.. .++..+.++ ..+...+..
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 999999999999999999999999999999887 789999999999999999743 234555543 445667888
Q ss_pred EeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
+|+|+.. .+..|+.|..+++||..+.
T Consensus 273 swsp~~~---~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 273 SWSPNGT---KITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eccCCCC---ccccccccceEEEeecccc
Confidence 8888776 8999999999999998764
No 46
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.4e-29 Score=213.22 Aligned_cols=270 Identities=14% Similarity=0.235 Sum_probs=218.0
Q ss_pred ceeecceEEeeEecCc---EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 106 AVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
..|...|.|++-.+.. +++|+.||.|+|||+.+. .++.+++.|.+.|..|++.. ..+++++.|.+|+.|.++-
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhh-hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-
Confidence 4677899999988764 668999999999999987 88999999999999999987 6799999999999999875
Q ss_pred eEEEEEecCCceEEEEe-CCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224 183 QCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 183 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~ 257 (393)
..++++.....+..+.. ...-+++.....|.|||.+....+ .+.-....|.++.|+|. +|+++..|+.|.+||++
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence 46666665555544432 223344445568999999877766 77778889999999986 88899999999999999
Q ss_pred cCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD 332 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d 332 (393)
+.....+.+..+ .-..|+|+++ .|++|++|..++.||++. .+++..+.+|...|.++.|+ |+-+++||.|
T Consensus 219 ~~~Pl~KVi~~m-----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 219 QASPLKKVILTM-----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred cCCccceeeeec-----cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 985433332222 3356778765 589999999999999987 45678889999999999999 7899999999
Q ss_pred CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 333 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.+|+||....+..-..... ..-..|.++.|+.|+. ++++||+|+.|++|...
T Consensus 294 ksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dsk---yi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 294 KSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSK---YIISGSDDGNVRLWKAK 345 (433)
T ss_pred ceEEEeecCCCcchhhhhH-hhhheeeEEEEecccc---EEEecCCCcceeeeecc
Confidence 9999999987655443333 3334699999999887 99999999999999864
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=197.53 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=219.1
Q ss_pred ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
..|+.+++-+.|+.+ -+++.+.|.++.||-..+| +.+.++.+|++.|++++.+-+.++|+||+.|.++++||+++|+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 347889999999855 4668999999999999899 8999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCceEEEE--eCCCEEEEEcC------CeEEEEECCC-------Cc-eeeecCCCCcEEEEEEeCC--EEEEE
Q 016224 184 CAGVINLGGEVGCMI--SEGPWIFIGVT------NFVKAWNTQT-------NT-DLSLSGPVGQVYAMAVGND--LLFAG 245 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~--~~~~~l~~~~~------~~i~v~d~~~-------~~-~~~~~~~~~~v~~l~~~~~--~l~~~ 245 (393)
++..++.+.++..+. .++.++++..| +.|.++|++. .+ .+.+..+.+.++.+-|.+- .|++|
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 999999988876553 56777666533 4799999983 33 3467778899999999886 99999
Q ss_pred eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224 246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD 323 (393)
Q Consensus 246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 323 (393)
.+||.|.+||++++. +.+.....|...|..+.++ ..++++++.|.+-++||.++.++++++.. ..+|++.++++
T Consensus 166 he~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP 241 (327)
T KOG0643|consen 166 HEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISP 241 (327)
T ss_pred cCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceeccc
Confidence 999999999999874 5566667788899988886 45899999999999999999999999974 55888888874
Q ss_pred --CEEEEE-eCCCc-E------------EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 324 --QFLLSC-SLDKT-I------------KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 324 --~~l~s~-s~dg~-i------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
++++.| +.+-. | ++|++-..+++..+.+|-. ++.+++++|++. ..++|++||.|++...
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG--PINsvAfhPdGk---sYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG--PINSVAFHPDGK---SYSSGGEDGYVRLHHF 316 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc--CcceeEECCCCc---ccccCCCCceEEEEEe
Confidence 344444 33211 1 2233222334444555544 588999999877 7899999999999765
Q ss_pred C
Q 016224 388 P 388 (393)
Q Consensus 388 ~ 388 (393)
.
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 4
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.8e-27 Score=223.60 Aligned_cols=244 Identities=27% Similarity=0.441 Sum_probs=200.2
Q ss_pred EEEecCC-cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC-ce--EEEEeCCCEEEEE-cCCeEEEE
Q 016224 143 LTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGG-EV--GCMISEGPWIFIG-VTNFVKAW 215 (393)
Q Consensus 143 ~~~l~~h-~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~-~~--~~~~~~~~~l~~~-~~~~i~v~ 215 (393)
...+..| ...|+++.|+++|++|++++.|+.+++|+..+.+ ....+..+. .+ ..+.+++++++++ .|.+|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3445444 7899999999999999999999999999997777 455543222 22 3455788888876 77899999
Q ss_pred ECCCC-cee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe
Q 016224 216 NTQTN-TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG 289 (393)
Q Consensus 216 d~~~~-~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg 289 (393)
|+... ..+ .+.+|...|++++|+++ ++++|+.|++|++||++++ ++...+.+|...|.+++++ +++|+++
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----ECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----eEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 99444 554 88899999999999998 9999999999999999996 7789999999999999986 6689999
Q ss_pred cCCCcEEEeeCCCcc--eeeEeccCccc--eEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224 290 SMDNSIRVWNLETLQ--CIQTLTEHTSV--VMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363 (393)
Q Consensus 290 ~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 363 (393)
+.|+.|++||+.+++ ++..+..+... ++++.|+ +.++++++.|+.+++||+.....+.....|... +.++..
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~ 384 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFS 384 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--ceeEec
Confidence 999999999999999 66788776665 8999998 779999999999999999988888888877765 222221
Q ss_pred eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 364 MPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.-...++.++++|+.|+.|++|++.++..
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 11244556999999999999999997643
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=225.07 Aligned_cols=271 Identities=20% Similarity=0.347 Sum_probs=221.9
Q ss_pred ceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224 111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (393)
Q Consensus 111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (393)
.+-.+.|.|.. ++++--.|.|++||..-+ .++..|.+|.++|..|+|+|++.+++||+.|-.|+||++.+.+|+.++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 55667787775 557888999999999988 899999999999999999999999999999999999999999999988
Q ss_pred ecCCce-EEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCc
Q 016224 189 NLGGEV-GCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (393)
Q Consensus 189 ~~~~~~-~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~ 261 (393)
..+-.. ..+ ...-.+++++ .|.+|+||+.++.+.+ .+.+|.-.|.|..|+|. ++++++-|.+|+|||+..-..
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 776543 333 3466777765 6679999999999988 89999999999999994 999999999999999864211
Q ss_pred c-------------------------ccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcc--eeeEeccC
Q 016224 262 C-------------------------FEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQ--CIQTLTEH 312 (393)
Q Consensus 262 ~-------------------------~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~--~~~~~~~~ 312 (393)
. ......+.+|...|...+|.+. .|++|+.|..|++|.+..-+ .+.+..+|
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH 249 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH 249 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc
Confidence 0 0112456789999999999985 79999999999999986533 36677899
Q ss_pred ccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 313 TSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 313 ~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
...|.++.|++ +++++.|+|++|+|||+.....++.+...+.. -..++.+|... |+.++.|+-+.+|.++
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR--FW~laahP~lN----LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR--FWILAAHPELN----LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe--EEEEEecCCcc----eeeeecCCceEEEEEc
Confidence 99999999996 79999999999999999888877777655544 55566666554 5555567777777765
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=207.10 Aligned_cols=230 Identities=24% Similarity=0.383 Sum_probs=203.2
Q ss_pred eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224 107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
.|...+..+.|...+ +++.+.|-.+.+||.++-+++++.+.+|+..|.+++|-|-|.+|++++.|.+|+.|++.++.+
T Consensus 148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c 227 (406)
T KOG0295|consen 148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC 227 (406)
T ss_pred ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee
Confidence 355567888887553 456888888999999987788999999999999999999999999999999999999999999
Q ss_pred EEEEecCCceEEEE---eCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-----------------EE
Q 016224 185 AGVINLGGEVGCMI---SEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-----------------LL 242 (393)
Q Consensus 185 ~~~~~~~~~~~~~~---~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-----------------~l 242 (393)
+.++..+.+...+. .+|.+++++ .|.++++|-+.++... .+..|.-+|.+++|.|. ++
T Consensus 228 v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l 307 (406)
T KOG0295|consen 228 VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVL 307 (406)
T ss_pred EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEE
Confidence 99999887654443 478888775 7789999999998665 77888889999988542 78
Q ss_pred EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEE
Q 016224 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL 320 (393)
Q Consensus 243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 320 (393)
.+++.|++|++||+.++ .++.++.+|...|..++++ |++|+++..|+++++||+++++++.++..|...++++.
T Consensus 308 ~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 308 GSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred EeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 99999999999999998 7789999999999999998 78999999999999999999999999999999999999
Q ss_pred Ec--CCEEEEEeCCCcEEEEEc
Q 016224 321 CW--DQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 321 ~~--~~~l~s~s~dg~i~iwd~ 340 (393)
|. -.++++|+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 98 459999999999999963
No 51
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.6e-26 Score=220.68 Aligned_cols=229 Identities=17% Similarity=0.216 Sum_probs=173.6
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE-EEEEecCCceEEEEeCCC
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQC-AGVINLGGEVGCMISEGP 202 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 202 (393)
|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +++|+||+.|++|+|||+.++.. ...+
T Consensus 50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-------------- 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-------------- 114 (568)
T ss_pred CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------------
Confidence 677899999998876 788899999999999999996 78999999999999999976432 1100
Q ss_pred EEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEE
Q 016224 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (393)
Q Consensus 203 ~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l 279 (393)
......+.+|...|.+++|+|+ +|++++.|+.|++||++++. ....+. |...|.++
T Consensus 115 ----------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----~~~~i~-~~~~V~Sl 173 (568)
T PTZ00420 115 ----------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----RAFQIN-MPKKLSSL 173 (568)
T ss_pred ----------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----EEEEEe-cCCcEEEE
Confidence 0011245678899999999996 56789999999999998863 233333 45678888
Q ss_pred EEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE-------cCCEEEEEeCCC----cEEEEEcCCCcce
Q 016224 280 VVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-------WDQFLLSCSLDK----TIKVWFATDSGNL 346 (393)
Q Consensus 280 ~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-------~~~~l~s~s~dg----~i~iwd~~~~~~~ 346 (393)
+|+ +.+|++++.|+.|+|||+++++.+.++.+|.+.+.+..+ ++.+|++++.|+ +|+|||++.....
T Consensus 174 swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 174 KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred EECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 885 678999999999999999999999999999876543322 256888888774 7999999864443
Q ss_pred EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
.....+.....++...+ +.+.+.++++|+.|+.|++|++..+.
T Consensus 254 l~~~~ld~~~~~L~p~~--D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 254 LVTMSIDNASAPLIPHY--DESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred eEEEEecCCccceEEee--eCCCCCEEEEEECCCeEEEEEccCCc
Confidence 33333333323322222 34455689999999999999997664
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.8e-26 Score=235.17 Aligned_cols=251 Identities=16% Similarity=0.232 Sum_probs=193.3
Q ss_pred CCeEEEEECCCCcEEEEE-----ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC----e----EEEEEecCCce
Q 016224 128 CKFLHSWTVGDGFKLLTQ-----LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG----Q----CAGVINLGGEV 194 (393)
Q Consensus 128 dg~i~vwd~~~~~~~~~~-----l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~----~----~~~~~~~~~~~ 194 (393)
+|.+++|+..+- +.... +..|...|++++|+|++++||+|+.|++|+||++.+. . ....+.....+
T Consensus 457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL 535 (793)
T ss_pred hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce
Confidence 677788887654 33333 3458999999999999999999999999999997542 1 12222333333
Q ss_pred EEEE--e-CCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEEeccCCccccCc
Q 016224 195 GCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPA 266 (393)
Q Consensus 195 ~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I~vwd~~~~~~~~~~~ 266 (393)
..+. + .+.+|+++ .|+.|++||+.+++.+ .+.+|...|++++|++ + +|++|+.|+.|++||+++. ...
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~~~ 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSI 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----cEE
Confidence 3332 2 35566654 8999999999988766 7788999999999986 3 8999999999999999876 334
Q ss_pred eeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcC
Q 016224 267 ASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 267 ~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~ 341 (393)
..+..+ ..+.++.|. +.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. +.+|++++.|++|+|||++
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 444433 567788773 6799999999999999998765 577888999999999997 7799999999999999997
Q ss_pred CC------cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 342 DS------GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 342 ~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
.. ..+..+..|.. .+..+.|++++. +|++|+.|+.|++|+...
T Consensus 691 ~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~---~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 691 MSISGINETPLHSFMGHTN--VKNFVGLSVSDG---YIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCccccCCcceEEEcCCCC--CeeEEEEcCCCC---EEEEEeCCCEEEEEECCC
Confidence 43 33444444443 466778877654 999999999999999753
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.9e-26 Score=189.66 Aligned_cols=272 Identities=19% Similarity=0.320 Sum_probs=228.3
Q ss_pred eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEE--EecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCC
Q 016224 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLT--QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS 181 (393)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~--~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~ 181 (393)
.|...+..++|+.+ .+++|+.|+++.+|+++.. +.+. ...+|.+.|-.++|+| ..++|++++.|.+|++||++.
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 35568888999866 4668999999999999866 4443 4578999999999977 568999999999999999999
Q ss_pred CeEEEEEecCCc--eEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224 182 GQCAGVINLGGE--VGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (393)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~ 256 (393)
++++..+..... ...+.+++.+++++ .|..|.+.|.++.+..........+..+.|+.+ +|+.....|.|.|...
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 999998876543 45566888888876 788999999999998877777778888888644 7777777899999987
Q ss_pred ccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224 257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD 332 (393)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d 332 (393)
..- +++..++.|...+.|+.++ |++||+|+.|-.+.+||+...-+++.+.-+.-+|..|.|+ +++||++|+|
T Consensus 177 psL----kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 177 PSL----KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred ccc----ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 644 8889999999999999987 6799999999999999999999999999999999999998 8999999999
Q ss_pred CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC---------CeEEEEeCCc
Q 016224 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND---------NSVRFYDLPS 389 (393)
Q Consensus 333 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d---------g~I~iwd~~s 389 (393)
-.|-|=++.++.++..+.. ..+...++|+|..+ +|+-++.| |.|++|-+++
T Consensus 253 h~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~---LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRP---LLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ceEEeEecccCCeEEEeec---cCCceeEEecCCCc---eeeEEecCCCCccccccceeEEecCCC
Confidence 9999999999988776654 34578899999877 88777654 6788887664
No 54
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.2e-26 Score=218.53 Aligned_cols=211 Identities=16% Similarity=0.251 Sum_probs=162.8
Q ss_pred EecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224 145 QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (393)
Q Consensus 145 ~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~ 223 (393)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+.++...... .....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------------~~~l~ 119 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------------SDPIV 119 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc------------------------------CcceE
Confidence 4779999999999999 8899999999999999999765321100 01122
Q ss_pred eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEe
Q 016224 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (393)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iw 298 (393)
.+.+|...|.+++|+|+ +|++++.|+.|++||+.++ +....+..|...|.+++|+ +++|++++.|++|++|
T Consensus 120 ~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg----~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw 195 (493)
T PTZ00421 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG----KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII 195 (493)
T ss_pred EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC----eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEE
Confidence 56789999999999985 8999999999999999876 4566778899999999986 6689999999999999
Q ss_pred eCCCcceeeEeccCccce-EEEEEc--CCEEEEEe----CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224 299 NLETLQCIQTLTEHTSVV-MSLLCW--DQFLLSCS----LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (393)
Q Consensus 299 d~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 371 (393)
|+++++.+.++.+|...+ ..+.|. +..+++++ .|+.|++||+++...............+....|.++..
T Consensus 196 D~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~--- 272 (493)
T PTZ00421 196 DPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN--- 272 (493)
T ss_pred ECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC---
Confidence 999999999999887654 345555 45666554 47899999998765443333323333344555655544
Q ss_pred EEEEEe-CCCeEEEEeCCceee
Q 016224 372 VLLCSC-NDNSVRFYDLPSVII 392 (393)
Q Consensus 372 ~l~s~s-~dg~I~iwd~~s~~l 392 (393)
+|++++ .|+.|++||+.++++
T Consensus 273 ~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 273 LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEEEeCCCeEEEEEeeCCce
Confidence 777776 599999999998764
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.9e-26 Score=187.74 Aligned_cols=237 Identities=25% Similarity=0.400 Sum_probs=194.4
Q ss_pred EEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCC---eEEEEEe--cCCceEE--EEeCCCEEEEE-cCCe
Q 016224 141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASG---QCAGVIN--LGGEVGC--MISEGPWIFIG-VTNF 211 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~---~~~~~~~--~~~~~~~--~~~~~~~l~~~-~~~~ 211 (393)
..++.+++|++.|..++|+|. |..|||++.|..|++|+...+ .+...+. +...+.. +.+.+++|+++ .|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 466789999999999999998 889999999999999999853 3443332 2233433 44689999876 8999
Q ss_pred EEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--C
Q 016224 212 VKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--N 284 (393)
Q Consensus 212 i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 284 (393)
+.||.-..++.. .+.+|..+|.+++|+++ +||+++.|.+|-||.+.. ...++....+..|...|..+.|.| +
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCcEEEEeeeccccccccEEEEcCCcc
Confidence 999988766533 88999999999999987 999999999999999984 445788899999999999999998 6
Q ss_pred EEEEecCCCcEEEeeCC---CcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEE
Q 016224 285 KLYSGSMDNSIRVWNLE---TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 359 (393)
+|++++.|.+|++|+-. ..++++++.+|...|.+++|+ |..|++++.|++|+||-.... ....+...+.
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~~~~~sr~~Y 237 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------LSGMHSRALY 237 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------cchhcccceE
Confidence 89999999999999876 467899999999999999998 779999999999999976421 1122223466
Q ss_pred EEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
.+.|. + . .|++++.|+.|++|.-..
T Consensus 238 ~v~W~-~-~---~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 238 DVPWD-N-G---VIASGGGDDAIRLFKESD 262 (312)
T ss_pred eeeec-c-c---ceEeccCCCEEEEEEecC
Confidence 67775 2 2 799999999999997653
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4e-26 Score=203.91 Aligned_cols=240 Identities=28% Similarity=0.444 Sum_probs=195.1
Q ss_pred EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ce--EEEEeCCCEEEEE-cCCeEEEEECC
Q 016224 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EV--GCMISEGPWIFIG-VTNFVKAWNTQ 218 (393)
Q Consensus 143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~~-~~~~i~v~d~~ 218 (393)
++++++|..+|++++|+|++++|++++.||.|++|++.+++....+..+. .+ ..+.++++.++++ .++.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 34677999999999999999999999999999999999887666665543 33 2233566566655 68999999999
Q ss_pred CCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCC
Q 016224 219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDN 293 (393)
Q Consensus 219 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg 293 (393)
.++.. .+..|...+.++.|+++ ++++++.++.|.+||+... +....+..|...+.++.+++ .++++++.|+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 86555 67788889999999986 7777777999999999865 44566667888899999875 5677777799
Q ss_pred cEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (393)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 371 (393)
.|++||+++++.+..+..|...+.++.+.+ +.+++++.|+.|++||++.......+..+.. .+..+.|.++..
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~--- 232 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGY--- 232 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCc---
Confidence 999999999999999999999999999984 4899999999999999987666555544433 588899988733
Q ss_pred EEEEEeCCCeEEEEeCCcee
Q 016224 372 VLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 372 ~l~s~s~dg~I~iwd~~s~~ 391 (393)
++++++.||.|++|++.+++
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EEEEEcCCCcEEEEEcCCce
Confidence 78888889999999998654
No 57
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.2e-26 Score=210.33 Aligned_cols=273 Identities=19% Similarity=0.309 Sum_probs=230.6
Q ss_pred cceeecceEEeeEecCcEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 105 RAVIKTDILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
...|..+|..++++.++.++++ ..+.|++|+..+. ++++++..- .+.+..|-|.++++++|...|.+.++|+.+..
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 4568889999999999877655 5679999999998 899998744 89999999999999999999999999999998
Q ss_pred EEEEEecCCce-E--EEEeCCCEEE-EEcCCeEEEEECCCCc--------ee-----eecCCCCcEEEEEEeCC--EEEE
Q 016224 184 CAGVINLGGEV-G--CMISEGPWIF-IGVTNFVKAWNTQTNT--------DL-----SLSGPVGQVYAMAVGND--LLFA 244 (393)
Q Consensus 184 ~~~~~~~~~~~-~--~~~~~~~~l~-~~~~~~i~v~d~~~~~--------~~-----~~~~~~~~v~~l~~~~~--~l~~ 244 (393)
.+.+++.+... - ...+++..++ ++.|.+|++||..--. .+ ........|.|+.++|| +|++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 88888755443 2 3345665554 5699999999964211 11 23345678999999998 9999
Q ss_pred EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
+--|.+|+||-+.+- +....+.+|.-+|.++.. ++++++||+.|..|+||-+.-|.|-+++-+|...|+++.|-
T Consensus 526 sLLdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EeccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 999999999998876 667788999999988876 56799999999999999999999999999999999999998
Q ss_pred C--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 323 D--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 323 ~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+ .++.+++.|+.|+-||-...+.++.+.+|..+ +.+++.+|++. +++++|.|.+|++|+-..
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e--v~cLav~~~G~---~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE--VWCLAVSPNGS---FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchhe--eeeeEEcCCCC---eEEeccCCceeEeeeccC
Confidence 5 47999999999999999888888888888877 77777777665 999999999999998654
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.5e-27 Score=211.39 Aligned_cols=245 Identities=21% Similarity=0.278 Sum_probs=206.5
Q ss_pred EEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCce-EE--EEeC-CCEEEEEcCCeEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEV-GC--MISE-GPWIFIGVTNFVKA 214 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~-~~--~~~~-~~~l~~~~~~~i~v 214 (393)
+.++++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++..+... .. +..+ .++|.++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 57789999999999999999 889999999999999999876 8899999877543 22 3334 44666789999999
Q ss_pred EECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEe
Q 016224 215 WNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSG 289 (393)
Q Consensus 215 ~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg 289 (393)
||+++|+..........++++.|+|+ .|++|+.|+.|+.||++++ +.++....|-+.|..+.| ++.++++.
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999999987777888999999887 8999999999999999998 678888889999999998 46799999
Q ss_pred cCCCcEEEeeCCCcceeeEe---ccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCccEEEEEe
Q 016224 290 SMDNSIRVWNLETLQCIQTL---TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCG 363 (393)
Q Consensus 290 ~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~ 363 (393)
+.|++++||+.+..-+++.+ ..|.-+...+...+.+++.-+.|+.|.||.+...-+ ...+.+|........+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 99999999999887665544 346666666666688999999999999998754332 345567777777888999
Q ss_pred eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 364 MPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+||+. +|++|+.||.+.+||..+.++
T Consensus 441 SpDG~---~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 441 SPDGR---TLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred cCCCC---eEEeecCCccEEEeechhhhh
Confidence 99877 999999999999999988654
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3.7e-26 Score=192.24 Aligned_cols=276 Identities=16% Similarity=0.255 Sum_probs=215.3
Q ss_pred cceeecceEEeeEecCcEE--EecCCCeEEEEECCC-----------------CcEEEEEecCCcCCEEEEEecCCCCEE
Q 016224 105 RAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD-----------------GFKLLTQLEGHQKVVSGITLPSGSDKL 165 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~-----------------~~~~~~~l~~h~~~I~~i~~s~~~~~l 165 (393)
.+.|+.++.|.+|++++.+ +|+.|..|+|.|++. ....+++|-.|.++|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 4679999999999988654 699999999999871 124678899999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEE---EEecCCceEEE--EeCCCEEEEEcCC-eEEEEECCCCcee----eecCCCCcEEEE
Q 016224 166 YSGSKDETVRVWDCASGQCAG---VINLGGEVGCM--ISEGPWIFIGVTN-FVKAWNTQTNTDL----SLSGPVGQVYAM 235 (393)
Q Consensus 166 ~s~s~dg~v~iwd~~~~~~~~---~~~~~~~~~~~--~~~~~~l~~~~~~-~i~v~d~~~~~~~----~~~~~~~~v~~l 235 (393)
++|+.|++|+++|+.+....+ .++...++.++ .+.|.+|++|.+. .+++||+.+-+.. .-.+|.+.|+++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 999999999999997654333 33444445444 4799999999776 9999999998876 345788999999
Q ss_pred EEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec-Cce-eeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224 236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHS-LAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTL 309 (393)
Q Consensus 236 ~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~-~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 309 (393)
.+++. +.++++.||.|++||--+. +++.++. .|. ..|++..| +++++++.+.|..+++|.+.+++++.++
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 99987 9999999999999997765 4444443 343 45677767 4779999999999999999999999998
Q ss_pred ccCcc-----ceEEEEEc--CCEEEEEeC-CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe
Q 016224 310 TEHTS-----VVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (393)
Q Consensus 310 ~~~~~-----~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~ 381 (393)
.+-.. --+...|. .+|++.-.+ .+.+.-||.++......+. ..+...+..+..+|..+ .+++++.|..
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p---~FmTcsdD~r 419 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVRWIVHSPVEP---AFMTCSDDFR 419 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-cCCCCCceEEEeCCCCC---ceeeecccce
Confidence 75421 11233344 556665443 5789999999877654433 34444588888888776 8999999999
Q ss_pred EEEEeCC
Q 016224 382 VRFYDLP 388 (393)
Q Consensus 382 I~iwd~~ 388 (393)
+++|--+
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999643
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.6e-27 Score=198.80 Aligned_cols=240 Identities=19% Similarity=0.340 Sum_probs=200.9
Q ss_pred eecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEe--------cCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224 108 IKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQL--------EGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (393)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l--------~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw 177 (393)
.+..+-|..|+|++ +++|+.||.|.+||..+| ++.+.+ .-|..+|.||.|+.|..+||+|+.||.|++|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34567899999985 557999999999999988 554433 3578999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (393)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd 255 (393)
.+++|+|++.|. ..|...|+++.|+.| .+++++.|.++++.-
T Consensus 291 ri~tG~ClRrFd------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 291 RIETGQCLRRFD------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHG 334 (508)
T ss_pred EEecchHHHHhh------------------------------------hhhccCeeEEEEccCcchhhcccccceEEEec
Confidence 999999987764 468889999999988 899999999999999
Q ss_pred eccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEc---CCEEEE
Q 016224 256 FNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW---DQFLLS 328 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~---~~~l~s 328 (393)
+.++ +.++.+.+|...|....| +|+++++++.||+|++|+..+.+++.+|+. ...+|.++..- +..+++
T Consensus 335 lKSG----K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 335 LKSG----KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred cccc----hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence 8887 778999999999988877 478999999999999999999999999974 44567777665 568999
Q ss_pred EeCCCcEEEEEcCCCcceEEEEeecC-CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 329 CSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 329 ~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+...++|.|-++. ++.+..+..... .....+.+.+|.++ ++++.++|+.++.|.+.+|+|
T Consensus 411 CNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe---wiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE---WIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred EcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc---EEEEEccCcEEEEEEeecCce
Confidence 9999999999984 555555544333 23355566666655 999999999999999998875
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-26 Score=215.51 Aligned_cols=237 Identities=16% Similarity=0.244 Sum_probs=191.4
Q ss_pred eeecceEEeeEecCc--EEEecCCCeEEEEECCC--------------------------------C-------------
Q 016224 107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD--------------------------------G------------- 139 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~--------------------------------~------------- 139 (393)
.|++.|.|+.|++++ +++|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 788999999999885 44799999999998765 0
Q ss_pred --------------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEE
Q 016224 140 --------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205 (393)
Q Consensus 140 --------------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (393)
.+++..+.||.+.|.+|.|+.+ ++|+|++.|.+|+||++...+|+..|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-----------------
Confidence 0345667799999999999965 58999999999999999998888776
Q ss_pred EEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE-
Q 016224 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV- 281 (393)
Q Consensus 206 ~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~- 281 (393)
.|...|+|++|+|. +|++|+-|++|+||++.... +.....-..-|+++++
T Consensus 407 ---------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~ 460 (712)
T KOG0283|consen 407 ---------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-----VVDWNDLRDLITAVCYS 460 (712)
T ss_pred ---------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe-----eEeehhhhhhheeEEec
Confidence 58889999999985 99999999999999998752 2222223356677666
Q ss_pred -cCCEEEEecCCCcEEEeeCCCcceeeEeccC--------ccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEE
Q 016224 282 -GANKLYSGSMDNSIRVWNLETLQCIQTLTEH--------TSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVT 349 (393)
Q Consensus 282 -~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~ 349 (393)
+|+..+.|+.+|.+++|+.+..+....+..+ ...|+.+.|. .+.+++.+.|..|+|||.++...+..+
T Consensus 461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence 5789999999999999999988776655321 2279999998 346888899999999999888888888
Q ss_pred EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 350 ~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
.+......-....|+.++. +|+++++|..|++|+++..
T Consensus 541 KG~~n~~SQ~~Asfs~Dgk---~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 541 KGFRNTSSQISASFSSDGK---HIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cccccCCcceeeeEccCCC---EEEEeecCceEEEEeCCCC
Confidence 7766555555666766544 9999999999999998543
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=192.05 Aligned_cols=235 Identities=19% Similarity=0.251 Sum_probs=191.6
Q ss_pred cccccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224 101 NINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (393)
Q Consensus 101 ~~~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd 178 (393)
.+-..+.|+..|+|+.|+.++ +++|..+|.|+||...++ .....+...-..|.-+.|+|-+..|+.|+.||.|.+|.
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence 345567899999999999875 447999999999999998 56666666778899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCc---eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eec---------------------------
Q 016224 179 CASGQCAGVINLGGE---VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLS--------------------------- 226 (393)
Q Consensus 179 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~--------------------------- 226 (393)
+.++...+.+..+.. ...+.++|+.++++ .|++|++||+.++..+ .+.
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 999777777776543 35677899999988 7889999999988743 111
Q ss_pred ------------------------CCCCcEEEEEEeC---C--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE
Q 016224 227 ------------------------GPVGQVYAMAVGN---D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (393)
Q Consensus 227 ------------------------~~~~~v~~l~~~~---~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~ 277 (393)
.+...+.++.+.| . +.|+|+-||+|.|||+.... .+..-.|...|.
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----~R~~c~he~~V~ 331 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----LRHICEHEDGVT 331 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----hheeccCCCceE
Confidence 1111122222222 2 78889999999999998753 344456888899
Q ss_pred EEEEcC-CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224 278 SLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 278 ~l~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 341 (393)
.+.|.+ .+|++++.+|.|++||.++|+++.++.+|...|.+++.+ .++++++|.|++.+||+..
T Consensus 332 ~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 332 KLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999987 689999999999999999999999999999999999988 5799999999999999864
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=9.5e-27 Score=190.31 Aligned_cols=275 Identities=15% Similarity=0.238 Sum_probs=221.7
Q ss_pred cceeecceEEeeEe---cCcE--EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224 105 RAVIKTDILCRNWV---QGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (393)
Q Consensus 105 ~~~~~~~i~c~~~~---~~~~--~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~ 179 (393)
...|..+|..++|+ +++. ++++.|+.-.+-+-+++ .-+.++.+|+++|++..+..+..+-|+++.|-+-+|||.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 44577799999998 4443 36999999999888898 899999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCceEEEE--eCCCEEEE-EcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEE
Q 016224 180 ASGQCAGVINLGGEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252 (393)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~ 252 (393)
-+|..+..+.+..-+..+. .+...|++ |.+..+++||++..+.. .+.+|.+.|..+.|... .+++++.|++|+
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 9999999999887776554 45566665 48889999999876644 78899999999998544 788889999999
Q ss_pred EEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEE
Q 016224 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC 329 (393)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~ 329 (393)
+||.+++. .++.+. ...+|.++..+ ...+++-...+.|.+||..+..+++.++. ...|.+...+ ...+++|
T Consensus 169 LWD~rTgt----~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 169 LWDHRTGT----EVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAG 242 (334)
T ss_pred EEEeccCc----EEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEec
Confidence 99999984 334433 34556666665 23455556678999999999999988874 3345555555 4689999
Q ss_pred eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 330 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
+.|..++.||..+++.+... ...+..+|.++.|+|++. ..++||.||+|+||.+..+
T Consensus 243 ged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE---~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGE---LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCc---eeeccCCCceEEEEEecCC
Confidence 99999999999999887764 233445699999999887 8999999999999998654
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-26 Score=214.41 Aligned_cols=240 Identities=21% Similarity=0.379 Sum_probs=204.5
Q ss_pred EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEE--EEeCCCEEEEE-cCCeEEEEECCC
Q 016224 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIG-VTNFVKAWNTQT 219 (393)
Q Consensus 144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~ 219 (393)
..+...+..|..++|+|....++++-..|.|++||++.+.++..|..+ +++.. +.+...++++| .|-.|++|+..+
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 345667788999999999999999999999999999999999888654 45544 44677787776 555999999999
Q ss_pred Ccee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCc
Q 016224 220 NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNS 294 (393)
Q Consensus 220 ~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~ 294 (393)
.+.+ ++.+|.+.|..+.|++. .+++++.|.+|+||+..+. ..+..+.+|...|+|..|.+ +.+++++-|.+
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----ceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 9988 99999999999999998 9999999999999999987 77889999999999999986 58999999999
Q ss_pred EEEeeCCCcc-----------------------------eeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC
Q 016224 295 IRVWNLETLQ-----------------------------CIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS 343 (393)
Q Consensus 295 i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~ 343 (393)
|||||+...+ ..+.+.+|...|+-++|++ ..|++|+.|..|++|.+.+.
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 9999985211 1234678999999999997 68999999999999999877
Q ss_pred cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
+..+.-.-..+...|.++.|+|..+ +|++.|+|++|+|||+..-
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~---lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQD---LILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccc---eeEecCCCccEEEEecccc
Confidence 7655544445556699999998766 9999999999999999753
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.2e-24 Score=180.74 Aligned_cols=245 Identities=14% Similarity=0.184 Sum_probs=199.4
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CceEEEEe-CCCEEEEE--cCCeEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGCMIS-EGPWIFIG--VTNFVKA 214 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~-~~~~l~~~--~~~~i~v 214 (393)
++.+.+..-...|.+|.|+++|.+|++++.|.+++|||..+++.++++... ....++.. +...+.++ .|.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 455667777889999999999999999999999999999999999988765 33455554 44444444 4789999
Q ss_pred EECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC
Q 016224 215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM 291 (393)
Q Consensus 215 ~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~ 291 (393)
.++.+++.+ .+.+|...|.+|+.+|- .+++++.|++|++||++.. ++...+.....++.++.+.|-++|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~----~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK----KCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC----CCceEEecCCCcceeECCCCcEEEEecC
Confidence 999999988 78899999999999985 9999999999999999976 4455555556677777777888999988
Q ss_pred CCcEEEeeCCCc--ceeeEecc---CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCc-cEEEEEe
Q 016224 292 DNSIRVWNLETL--QCIQTLTE---HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH-GVLALCG 363 (393)
Q Consensus 292 dg~i~iwd~~~~--~~~~~~~~---~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~ 363 (393)
...|++||++.. .+..++.. .....+.+.|+ |++|+.+...+.+++.|.-++..+..+..+.... --...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 889999999863 44555543 36677889998 8899999999999999999888777776655443 2356778
Q ss_pred eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 364 MPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.|++. ++++|+.||+|.+|++++++.
T Consensus 241 tPds~---Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 241 TPDSK---FVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred CCCCc---EEEEecCCCcEEEEEcCCCcE
Confidence 88877 999999999999999998863
No 66
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=4e-25 Score=203.85 Aligned_cols=266 Identities=21% Similarity=0.322 Sum_probs=215.3
Q ss_pred eeecceEEeeEecCc-EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEE-EEecC-CCCEEEEEeCCCcEEEEECCCC
Q 016224 107 VIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSG-ITLPS-GSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~-i~~s~-~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
.|+.+|..+...++. ++.++.||++++|+-..+ +-..+.+.+|.+-|.. +++.+ ++-+|++|+.|.+|.+|.....
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 466666666666665 667999999999997543 3334567889888887 88875 5557999999999999999999
Q ss_pred eEEEEEecCCceEEEEe---CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEecc
Q 016224 183 QCAGVINLGGEVGCMIS---EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 183 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~ 258 (393)
.....+..+..-.|..+ ++.++..+.|.++++|....-.. .+.+|...|.++..-|+ .+++|+.|.+|++|.-.
T Consensus 92 ~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~- 169 (745)
T KOG0301|consen 92 EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY-SLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG- 169 (745)
T ss_pred CchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc-ccCCcchheeeeeecCCCcEEeccCcceeeeccCC-
Confidence 99999887766555443 44445556999999998754332 48999999999998777 99999999999999652
Q ss_pred CCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcE
Q 016224 259 TTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTI 335 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i 335 (393)
+.+..+.+|...|..+++- ...|++++.||.|++|++ +++++.++.+|+..|.++... ++.++++++|+++
T Consensus 170 -----~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 170 -----TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred -----chhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence 5578899999999999985 458999999999999999 799999999999999999854 6799999999999
Q ss_pred EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
+||+.. +..+.+. +.. ..+.++++.++++ |++|++||.||||-..
T Consensus 244 riW~~~--e~~q~I~-lPt-tsiWsa~~L~NgD----Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 244 RIWKKD--ECVQVIT-LPT-TSIWSAKVLLNGD----IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeecC--ceEEEEe-cCc-cceEEEEEeeCCC----EEEeccCceEEEEEec
Confidence 999875 3333333 222 3588888888876 9999999999999875
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.6e-25 Score=184.13 Aligned_cols=259 Identities=18% Similarity=0.234 Sum_probs=202.0
Q ss_pred eecceEEeeEec--CcEE-EecCCCeEEEEECCC-CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 108 IKTDILCRNWVQ--GNCM-YGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 108 ~~~~i~c~~~~~--~~~~-~g~~dg~i~vwd~~~-~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
.+..|.+++|++ +.++ .|+-|++||+|+++. +.-.-+....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 345889999997 3444 699999999999986 322235567799999999999999999999999999999999998
Q ss_pred EEEEEecCCceEEEE--eC--CCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEecc
Q 016224 184 CAGVINLGGEVGCMI--SE--GPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~--~~--~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~ 258 (393)
....-.+..++..+. .. -..|++| .|.+|++||++....+......+.++++..-..+++++..+..|.+|+++.
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence 877777777766543 32 2356665 999999999999998877788889999998888999999999999999988
Q ss_pred CCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc--ceeeEeccCcc---------ceEEEEEcC--CE
Q 016224 259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL--QCIQTLTEHTS---------VVMSLLCWD--QF 325 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~l~~~~--~~ 325 (393)
....++.+.....+.....++..+.+..+.|+-+|.+.|..+..+ +.-.+|+.|.. .|.+|+|++ ..
T Consensus 186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT 265 (347)
T ss_pred CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence 765555444433344444455556667799999999999998876 44556677763 467888884 57
Q ss_pred EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
|++++.||++.+||-....++.....+.. ++.+..|+.++.
T Consensus 266 lvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ 306 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGS 306 (347)
T ss_pred EEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCC
Confidence 99999999999999876666555554444 477777766544
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=7.8e-25 Score=191.81 Aligned_cols=267 Identities=18% Similarity=0.249 Sum_probs=212.4
Q ss_pred ceEEeeEec--CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224 111 DILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (393)
Q Consensus 111 ~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (393)
.++.+...+ +.+++|+.|..+.++|...+ +.+.+++||...|+.+.|+++...+++++.|..|+||...........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 666777666 57889999999999999998 999999999999999999999999999999999999998776655444
Q ss_pred ecC-CceEE--EEeCCCEEEEE-cCCeEEEEECCCCceeeecCC---CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224 189 NLG-GEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 189 ~~~-~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~---~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~ 259 (393)
..+ .++.. ..+.+.+++.+ .|+...+.|++++..+....+ .-.+++.+|+|| +|.+|+.|+.|++||+...
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 433 33433 34678877765 888999999999998844443 345899999999 8899999999999999987
Q ss_pred CccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCc-cceEEEEEc--CCEEEEEeCCCc
Q 016224 260 TNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHT-SVVMSLLCW--DQFLLSCSLDKT 334 (393)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~--~~~l~s~s~dg~ 334 (393)
.....+.+|.++|.+++|+.| +|++++.|+.|++||+|..+...++.... ..+.++.|+ |.+|+.++.|=+
T Consensus 380 ----~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 380 ----TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred ----cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence 446788999999999999754 79999999999999999988888776433 368888887 889999988877
Q ss_pred EEEEEcCCC--cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 335 IKVWFATDS--GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 335 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
|++++-.+. .++..+..+. .....+.|.. ..+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~---~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHS--GLSTGVRFGE---HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcc--cccceeeecc---cceEEeeccchhheEEeec
Confidence 777764332 2233333333 2355666644 4449999999999998865
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.4e-25 Score=206.89 Aligned_cols=233 Identities=26% Similarity=0.440 Sum_probs=204.2
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS- 181 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~- 181 (393)
++.....+.|..|.|+ .+++|...|.+.++|+... .++.++++|.+.|++|+.+||+..++|||.|.+|++||..-
T Consensus 408 RTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 408 RTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred EEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 3334447888899877 4668999999999999988 88888999999999999999999999999999999999631
Q ss_pred ----Ce--------EEEEEecCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEE
Q 016224 182 ----GQ--------CAGVINLGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLF 243 (393)
Q Consensus 182 ----~~--------~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~ 243 (393)
+. ..++++....+.++ .+++++|+++ .|+++++|-+.+-+.. .+.+|.-+|.+|..+++ +++
T Consensus 487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV 566 (888)
T ss_pred eccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEE
Confidence 11 12445566666655 4789999999 8999999999998876 99999999999999998 999
Q ss_pred EEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE
Q 016224 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321 (393)
Q Consensus 244 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 321 (393)
||+.|..|++|-+.-+ .+.+.+.+|...|+++.|-++ .+++++.|+.|+-||-...+.++++.+|...|.+++.
T Consensus 567 TgSADKnVKiWGLdFG----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFG----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred eccCCCceEEeccccc----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence 9999999999988887 677889999999999999754 6999999999999999999999999999999999998
Q ss_pred c--CCEEEEEeCCCcEEEEEcCC
Q 016224 322 W--DQFLLSCSLDKTIKVWFATD 342 (393)
Q Consensus 322 ~--~~~l~s~s~dg~i~iwd~~~ 342 (393)
. |.+++++|.|.+|++|....
T Consensus 643 ~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 643 SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCCCCeEEeccCCceeEeeeccC
Confidence 7 77999999999999997644
No 70
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-25 Score=181.63 Aligned_cols=234 Identities=20% Similarity=0.275 Sum_probs=189.4
Q ss_pred eeEecCcEEEecCCCeEEEEECCCCc--EEEEEecCCcCCEEEEEec-C-CCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224 115 RNWVQGNCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLP-S-GSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (393)
Q Consensus 115 ~~~~~~~~~~g~~dg~i~vwd~~~~~--~~~~~l~~h~~~I~~i~~s-~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (393)
+.|....+++++.|++|+|+.+..+- +++.+|.+|+++|..++|. | -|.+||+++.||.|.||.-+.++-.+.
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~--- 95 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA--- 95 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh---
Confidence 45667788999999999999998553 7889999999999999994 3 799999999999999999887742211
Q ss_pred CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccCCccccCc
Q 016224 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPA 266 (393)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~~~~~~~~ 266 (393)
.....|...|++++|.|. .|++++.||.|.|++++.. ......
T Consensus 96 --------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ 142 (299)
T KOG1332|consen 96 --------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTS 142 (299)
T ss_pred --------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccch
Confidence 134578999999999987 8999999999999999876 223444
Q ss_pred eeecCceeeEEEEEEcC----------------CEEEEecCCCcEEEeeCCCc--ceeeEeccCccceEEEEEcC-----
Q 016224 267 ASLKGHSLAVVSLVVGA----------------NKLYSGSMDNSIRVWNLETL--QCIQTLTEHTSVVMSLLCWD----- 323 (393)
Q Consensus 267 ~~~~~~~~~v~~l~~~~----------------~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~----- 323 (393)
.....|...|.+++|.+ ..|++|+.|..|+||+..++ +...+|.+|...|..++|.+
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 55677999999998842 35999999999999999875 34456899999999999984
Q ss_pred -CEEEEEeCCCcEEEEEcCCC-cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 324 -QFLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 324 -~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
.+|++++.||++.||..... +.......+.....+..+.|+..+. +|+.++.|+.|.+|.-
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn---~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN---ILAVSGGDNKVTLWKE 285 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc---EEEEecCCcEEEEEEe
Confidence 37999999999999987633 2222223334455688999988776 9999999999999974
No 71
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.1e-26 Score=207.34 Aligned_cols=227 Identities=27% Similarity=0.392 Sum_probs=193.3
Q ss_pred EEEecCCCeEEEEECCCCc-----EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCCce
Q 016224 122 CMYGEKCKFLHSWTVGDGF-----KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGGEV 194 (393)
Q Consensus 122 ~~~g~~dg~i~vwd~~~~~-----~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~ 194 (393)
+++|+.||.|++|++.... ..+..++.|.+.|.+|+...+++.|+++|.|-+|++|+...+. ++.
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-------- 111 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-------- 111 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh--------
Confidence 7899999999999987432 2477889999999999999999999999999999999987653 222
Q ss_pred EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEE-eCC--EEEEEeCCCcEEEEEeccCCcc------ccC
Q 016224 195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-GND--LLFAGTQDGAILAWKFNVTTNC------FEP 265 (393)
Q Consensus 195 ~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~-~~~--~l~~~~~dg~I~vwd~~~~~~~------~~~ 265 (393)
.+..|.+.|.|+++ .++ ++++|+-|+.|.+||++.+... ...
T Consensus 112 -----------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 112 -----------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred -----------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 34679999999999 444 9999999999999999976320 112
Q ss_pred ceeec-CceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEc
Q 016224 266 AASLK-GHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 266 ~~~~~-~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~ 340 (393)
...+. ++..+|++++.+++ .|++|+..+.|++||.++++.+..+++|+..|..+..+ |..++++|.||+|++||+
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 22333 78889999999865 89999999999999999999999999999999999887 789999999999999999
Q ss_pred CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
....++..+..|... +.++..+|+-. .+++|+.||.|..=|+.+.
T Consensus 243 gqQrCl~T~~vH~e~--VWaL~~~~sf~---~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEG--VWALQSSPSFT---HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cccceeeeEEeccCc--eEEEeeCCCcc---eEEecCCCCcEEecccCCc
Confidence 998888888877765 88888776665 8999999999999998874
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=4.6e-25 Score=190.25 Aligned_cols=254 Identities=20% Similarity=0.314 Sum_probs=198.0
Q ss_pred CCCCCCCCcccCCCCCCCcccccceeecceEEeeEe-c-C---cEEEecCCCeEEEEECCCCc---EEEEEecCCcCCEE
Q 016224 83 NNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV-Q-G---NCMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVS 154 (393)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~-~-~---~~~~g~~dg~i~vwd~~~~~---~~~~~l~~h~~~I~ 154 (393)
+.|..-.+.|..... .+.....|.++|..+.|. . . .+++++.|.++++|..+.+. +.++.-+||+..|-
T Consensus 121 gsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 121 GSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVD 197 (423)
T ss_pred eecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccccee
Confidence 445555566665322 124456688899877774 2 2 37789999999999988652 23344459999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCC-------------------------eEEEEEecC-CceEEE-EeCCCEEE-E
Q 016224 155 GITLPSGSDKLYSGSKDETVRVWDCASG-------------------------QCAGVINLG-GEVGCM-ISEGPWIF-I 206 (393)
Q Consensus 155 ~i~~s~~~~~l~s~s~dg~v~iwd~~~~-------------------------~~~~~~~~~-~~~~~~-~~~~~~l~-~ 206 (393)
+|+..+++.++++|+.|.+|+||+.++. ..+-++..+ ..+..+ .++...++ +
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~ 277 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSV 277 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEee
Confidence 9999999999999999999999993211 011122222 223222 34444444 5
Q ss_pred EcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC-
Q 016224 207 GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA- 283 (393)
Q Consensus 207 ~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 283 (393)
+.|.+|+.||+.++...........+.++.+++. +|++|+.|..|++||.+.+... .....+.+|...|.++.|++
T Consensus 278 SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred cccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhheecCCC
Confidence 6999999999999998866666788999999987 9999999999999999988543 45678889999999999975
Q ss_pred --CEEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEc
Q 016224 284 --NKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 284 --~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~ 340 (393)
.+|++++.|+++++||+|+-+ ++..+.+|...|.++.|. +.+|++|+.|.+|+|+..
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 379999999999999999877 999999999999999999 669999999999999864
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=7e-26 Score=197.21 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=223.9
Q ss_pred CCCcccccc-eeecceEEeeEecC--cEEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCc
Q 016224 98 KNSNINNRA-VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173 (393)
Q Consensus 98 ~~~~~~~~~-~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~ 173 (393)
.|+...+.. .|...+-.+.|.++ .+.+|+.|..|++|++..+ ...+.+|.+..++|+++.|.+++.++++++.|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 344444433 36678888888755 6778999999999998755 2477889999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCc-eEEEE---eCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCC
Q 016224 174 VRVWDCASGQCAGVINLGGE-VGCMI---SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249 (393)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg 249 (393)
+++|++...+...++..+.. +.+.- .....+..+.|.+|++||+.........-....+..|..++..+++|-.|+
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dk 322 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDK 322 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccccc
Confidence 99999999999988887654 33332 223333334888999999999887766666778888888877999999999
Q ss_pred cEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCc----cceEEEEEc-
Q 016224 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHT----SVVMSLLCW- 322 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~~- 322 (393)
+|++||.+.. .+......+. .|+++.. ++..|.+.+.|.++.++|+++.+....+.+.. ...+.+.|+
T Consensus 323 kvRfwD~Rs~----~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 323 KVRFWDIRSA----DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ceEEEeccCC----ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 9999999987 4444544443 7777765 56789999999999999999999888886422 235677777
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 323 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
+.|+++||.||.|+||++.+++....+........++++.|.|.+. .|++++.++.+.+|-
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~---~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS---GLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc---hhhcccCCcceEecC
Confidence 6799999999999999998887776666655555799999998766 799999999999993
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.7e-23 Score=165.55 Aligned_cols=278 Identities=18% Similarity=0.260 Sum_probs=205.3
Q ss_pred eecceEEeeEecCcEE--EecCCCeEEEEECCC------C--------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC
Q 016224 108 IKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD------G--------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD 171 (393)
Q Consensus 108 ~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~------~--------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d 171 (393)
....|..++|.+.+-+ .|+..++++|-.... + .-+.+.-+.|++.|.|.+|+|+|++|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 3458889999977533 588999999865431 1 11233446789999999999999999999999
Q ss_pred CcEEEEECCCCeEEE-----EEecC-CceEEEE------eCCCEEEEE--cCCeEEEEECCCCcee-eecCCCCcEEEEE
Q 016224 172 ETVRVWDCASGQCAG-----VINLG-GEVGCMI------SEGPWIFIG--VTNFVKAWNTQTNTDL-SLSGPVGQVYAMA 236 (393)
Q Consensus 172 g~v~iwd~~~~~~~~-----~~~~~-~~~~~~~------~~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~ 236 (393)
.+|++.-.+...+.. ++..+ +.+..+. +.+.+|+++ .|-.|++-|...++.+ .+.+|.+.|.++-
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 999998765443321 22222 3333322 245666665 4457888888888776 8899999999875
Q ss_pred -EeCCEEEEEeCCCcEEEEEeccCCccccCceeecC---ceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224 237 -VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG---HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 237 -~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~---~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 310 (393)
|+.-++++|++|.+|++||++-......+-..+.+ ....|.+++.+ +.+|++|-.|....+||++.++.++.|.
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 66669999999999999999876322111122222 23566677665 6799999999999999999999999999
Q ss_pred cCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC--cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 311 EHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS--GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 311 ~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
.|...|.++.|++ .||++++.|..|++-|+... .++.......+...+..+.|+|..- -+++.+.|.++.+|-
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~---sfisssadkt~tlwa 347 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF---SFISSSADKTATLWA 347 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc---eeeeccCcceEEEec
Confidence 9999999999994 48999999999999998532 1222233333344588899988655 689999999999998
Q ss_pred CC
Q 016224 387 LP 388 (393)
Q Consensus 387 ~~ 388 (393)
++
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 75
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-24 Score=190.51 Aligned_cols=274 Identities=18% Similarity=0.252 Sum_probs=214.1
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEE---EEE-------------e-cCCcCCEEEEEecCCCCEE
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKL---LTQ-------------L-EGHQKVVSGITLPSGSDKL 165 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~---~~~-------------l-~~h~~~I~~i~~s~~~~~l 165 (393)
...|.-+++|++++++ ..++++.+++|.=|++.++... +.. - +.|...|.+++.++|++||
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 4456779999999988 5678999999999999877322 111 1 2788999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE---eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC
Q 016224 166 YSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI---SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240 (393)
Q Consensus 166 ~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~ 240 (393)
++|+.|..|.||+.++.+.+..+..+. .+.++. ...+++.++.|..|++|+++....+ ++.+|.+.|..|.....
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR 297 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc
Confidence 999999999999999999999877654 444443 2566777889999999999998877 89999999999988665
Q ss_pred --EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEecc-C----
Q 016224 241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTE-H---- 312 (393)
Q Consensus 241 --~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~---- 312 (393)
.+-+|+.|.++++|++... ....+.++...+-|+++ +.+.|++|+.+|.|.+|++.+.+++.+... |
T Consensus 298 eR~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred cceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 5555669999999999543 34556778888988887 677999999999999999999888877642 2
Q ss_pred -------ccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeE
Q 016224 313 -------TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382 (393)
Q Consensus 313 -------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I 382 (393)
...|++|+.. .+++++|+.+|.|++|-+.++- .+..+....-..-|.+++|++++. .+++..+....+
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk--~ivagiGkEhRl 450 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK--RIVAGIGKEHRL 450 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC--EEEEeccccccc
Confidence 2267888877 5799999999999999997763 344555555556688999887754 344444444444
Q ss_pred EEE
Q 016224 383 RFY 385 (393)
Q Consensus 383 ~iw 385 (393)
--|
T Consensus 451 GRW 453 (479)
T KOG0299|consen 451 GRW 453 (479)
T ss_pred cee
Confidence 434
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.9e-25 Score=180.27 Aligned_cols=229 Identities=14% Similarity=0.205 Sum_probs=178.1
Q ss_pred EEEEecC-CCCEEEEEe-------CCCcEEEEECCCCeEEEEEe---cCCceEEE--E--eCCCEEEEEcCCeEEEEECC
Q 016224 154 SGITLPS-GSDKLYSGS-------KDETVRVWDCASGQCAGVIN---LGGEVGCM--I--SEGPWIFIGVTNFVKAWNTQ 218 (393)
Q Consensus 154 ~~i~~s~-~~~~l~s~s-------~dg~v~iwd~~~~~~~~~~~---~~~~~~~~--~--~~~~~l~~~~~~~i~v~d~~ 218 (393)
.++.||| -.++||.+. ..|++.|-++...+-+.+.. .....-.+ . .++..+++..||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4678888 234444432 35899999987554444433 33332222 2 25566777899999999965
Q ss_pred CCc--eeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEec
Q 016224 219 TNT--DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGS 290 (393)
Q Consensus 219 ~~~--~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~ 290 (393)
... ...++.|..+|.++.|++. .+++++.|++|++|+...+ ..+.++.+|...|....|+ ++.+++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~----~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP----NSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC----cceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 433 2378899999999999875 7888899999999998876 5578899999999999997 57899999
Q ss_pred CCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeC
Q 016224 291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPD 366 (393)
Q Consensus 291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 366 (393)
.|+++++||++..-....+..|...+.+..|+ ...|+||+.|+.|++||++..+. +.++.+|. -.|..+.|+|.
T Consensus 168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~--~AVRkvk~Sph 245 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG--LAVRKVKFSPH 245 (311)
T ss_pred CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc--eEEEEEecCcc
Confidence 99999999998744444589999999999988 67899999999999999987664 34444444 45999999998
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCce
Q 016224 367 SEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 367 ~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
..+ +|++++.|-+++|||....
T Consensus 246 ~~~--lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 246 HAS--LLASASYDMTVRIWDPERQ 267 (311)
T ss_pred hhh--HhhhccccceEEecccccc
Confidence 654 8999999999999998754
No 77
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.1e-24 Score=178.23 Aligned_cols=260 Identities=14% Similarity=0.181 Sum_probs=204.1
Q ss_pred ecceEEeeEec--CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 109 KTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 109 ~~~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
+..|..+.|++ +.++.++-||.+++||+... .+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 45788899984 36778999999999999876 5555665 999999999986 4579999999999999999998888
Q ss_pred EEecCCceEEEEe---CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc
Q 016224 187 VINLGGEVGCMIS---EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF 263 (393)
Q Consensus 187 ~~~~~~~~~~~~~---~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~ 263 (393)
...+...+.++.. .+.+++.++|++|++||.+.............|.++....+.|++|+.+..|.+||++.....+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence 8888888877763 6777778899999999999865554444555999999999999999999999999999875432
Q ss_pred cCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCc----ceeeEeccCcc---------ceEEEEEcC--CEE
Q 016224 264 EPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETL----QCIQTLTEHTS---------VVMSLLCWD--QFL 326 (393)
Q Consensus 264 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~~---------~v~~l~~~~--~~l 326 (393)
+ ..-..-.-.+.+++. ++.-+++++-||.|.+=.+... +....|+.|.. +|.+++|++ +.|
T Consensus 170 q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tf 247 (323)
T KOG1036|consen 170 Q--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTF 247 (323)
T ss_pred h--hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceE
Confidence 1 111222334455554 4466899999999998766654 44556777643 689999995 579
Q ss_pred EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~ 378 (393)
+||+.||.|.+||+.+.+.+..+... +..|.+++|+.++. .||.++.
T Consensus 248 aTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~---~LAia~s 294 (323)
T KOG1036|consen 248 ATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGS---LLAIASS 294 (323)
T ss_pred EecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCC---eEEEEec
Confidence 99999999999999888777666554 44588888887766 8888864
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.5e-25 Score=193.61 Aligned_cols=251 Identities=19% Similarity=0.284 Sum_probs=197.2
Q ss_pred ccceeecceEEeeEecC---cEEEecCCCeEEEEECCCC---------cEEEEEecCCcCCEEEEEecCC-CCEEEEEeC
Q 016224 104 NRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG---------FKLLTQLEGHQKVVSGITLPSG-SDKLYSGSK 170 (393)
Q Consensus 104 ~~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~---------~~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~ 170 (393)
....|.++|.-+.+.|. -+.+++..+.|+|||..+- ..+-..|.+|++.=++|+|++. .-+|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 34567777777777654 3446789999999998732 1222378899998889999874 458999999
Q ss_pred CCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeC
Q 016224 171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ 247 (393)
Q Consensus 171 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~ 247 (393)
|++|.+||+........ .......+.+|...|..++|++- +|++++.
T Consensus 199 d~~i~lwdi~~~~~~~~------------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDK------------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred CCcEEEEeccccccCCc------------------------------cccceEEeecCCcceehhhccccchhhheeecC
Confidence 99999999976432100 00112356789999999999875 9999999
Q ss_pred CCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEcC
Q 016224 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWD 323 (393)
Q Consensus 248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~ 323 (393)
|+.+.|||+++. ..++.....+|...|.+++|+ +..||+|+.|++|.+||+|+ .+++.++.+|...|..|.|++
T Consensus 249 d~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 249 DGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred CCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 999999999974 237778888999999999997 45899999999999999998 457899999999999999994
Q ss_pred ---CEEEEEeCCCcEEEEEcCCCcc-----------eEEEEeec-CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 324 ---QFLLSCSLDKTIKVWFATDSGN-----------LEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 324 ---~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
..|++++.|+.+.|||+..-.. .+.++.|. +...|..+.|.|..+ ..|++.++|+.+.||.+.
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP--W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--WTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC--eEEEEecCCceEEEeecc
Confidence 5899999999999999974332 23334443 335688899988765 478899999999999986
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=182.19 Aligned_cols=280 Identities=17% Similarity=0.247 Sum_probs=214.0
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC--
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-- 180 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~-- 180 (393)
...|+..|.-++-... -+-+++.|.+.+||.++++ +++.++.+|.+.|.+|+|++.+.++++++.|++..||...
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN 222 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence 3456667776665443 3446889999999999999 9999999999999999999999999999999999999731
Q ss_pred ----C--------Ce--------------------------EEEEEecCCceEE---EEeCCC-EEEEEcCCeEEEEECC
Q 016224 181 ----S--------GQ--------------------------CAGVINLGGEVGC---MISEGP-WIFIGVTNFVKAWNTQ 218 (393)
Q Consensus 181 ----~--------~~--------------------------~~~~~~~~~~~~~---~~~~~~-~l~~~~~~~i~v~d~~ 218 (393)
. ++ .+..+..+..+.. +...++ .+.++.|.+-.+||++
T Consensus 223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence 1 00 0001111111111 112344 4455699999999999
Q ss_pred CCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCc
Q 016224 219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNS 294 (393)
Q Consensus 219 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~ 294 (393)
+++.+ .+.+|....+.++-+|. ++++.+.|.+.++||++..- ..+..+.+|...|++..|. ++.+++|+.|.+
T Consensus 303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrT 379 (481)
T KOG0300|consen 303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRT 379 (481)
T ss_pred cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeecccccceeEEEEecCCceeecCCCce
Confidence 99998 88999999999999998 88999999999999999543 5677899999999999997 668999999999
Q ss_pred EEEeeCCCc-ceeeEeccCccceEEEEEc-C-CEEEEEeCCCcEEEEEcCCCcceEEEE---eecCCccEEEEEeeeCCC
Q 016224 295 IRVWNLETL-QCIQTLTEHTSVVMSLLCW-D-QFLLSCSLDKTIKVWFATDSGNLEVTY---THNEEHGVLALCGMPDSE 368 (393)
Q Consensus 295 i~iwd~~~~-~~~~~~~~~~~~v~~l~~~-~-~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~ 368 (393)
|++||+++. .++.++. -..+++.++.+ + ..|+.-..+..|++||+. +..+..+. ...+...|.+.+|..+.+
T Consensus 380 vKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred EEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCc
Confidence 999999875 4566666 35577777777 4 467777777899999996 44433332 233344588888887766
Q ss_pred CCcEEEEEeCCCeEEEEeCCcee
Q 016224 369 GKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
-. -|++++-|..+.-|++..-+
T Consensus 458 ~c-nLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 458 AC-NLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cc-ccccccccceeeeeEecccC
Confidence 54 47888899999999987543
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=189.11 Aligned_cols=265 Identities=20% Similarity=0.271 Sum_probs=205.1
Q ss_pred cceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224 110 TDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (393)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (393)
++|..+.|++.. -+.....-.+.||+..+. ..++++...+..|.++.|-.||++|+.|+..|.|+|+|+.+...++.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchh-hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 489999999742 233333456888998776 67777777889999999999999999999999999999766545555
Q ss_pred EecCCc-e--EEEEe-CCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEecc
Q 016224 188 INLGGE-V--GCMIS-EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 188 ~~~~~~-~--~~~~~-~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~ 258 (393)
+..+.. + ..+.+ ++..++.+ .|+.+++||+.+...+ .+.+|.+.|.+.+++|- ++++|+.||.|++||++.
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 554433 2 23333 55666666 4558899999998876 78999999999999886 899999999999999998
Q ss_pred CCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCCC
Q 016224 259 TTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK 333 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg 333 (393)
.. ..+.++ .|..+|..+.+ ++..+++++ ...|++||+.+ ++.+..+..|...|+|+.+. +..|++++.|+
T Consensus 186 ~~---~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 186 LT---SRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred CC---ceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 74 223333 47778877766 346777775 56899999985 55566666699999999998 48999999999
Q ss_pred cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
.|++||+.+. ..........++++++.+|++. .++.|-.||.+.+=+
T Consensus 261 ~VKVfd~t~~---Kvv~s~~~~~pvLsiavs~dd~---t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 261 HVKVFDTTNY---KVVHSWKYPGPVLSIAVSPDDQ---TVVIGMSNGLVSIRR 307 (487)
T ss_pred ceEEEEccce---EEEEeeecccceeeEEecCCCc---eEEEecccceeeeeh
Confidence 9999997554 3444445566799999988766 899999999887653
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.5e-25 Score=190.15 Aligned_cols=232 Identities=20% Similarity=0.304 Sum_probs=187.4
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (393)
...|..+|.-+.|+|| .+++.+.+..+.+||+.++ ...+.+ ++|...+.+++|.||+..+++|+.|+++..||++.
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg-d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG-DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcc-hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 4567789999999988 4567778888999999999 555544 45678999999999999999999999999999975
Q ss_pred CeEEEEEecC--Cce--EEEEeCCCEEE-EEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224 182 GQCAGVINLG--GEV--GCMISEGPWIF-IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (393)
Q Consensus 182 ~~~~~~~~~~--~~~--~~~~~~~~~l~-~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw 254 (393)
.. ....+.- ..+ ..+.++|+.++ ++.|..|++|+.++.....+.....+|++++.+.+ ++++.-.+..|++|
T Consensus 344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 43 2222221 122 23446777766 46899999999998887767777889999999988 78888899999999
Q ss_pred EeccCCccccCceeecCceeeE--EEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC---CEE
Q 016224 255 KFNVTTNCFEPAASLKGHSLAV--VSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD---QFL 326 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v--~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~---~~l 326 (393)
|+... ..+..+.+|...- ..-+|. ..++++|++|+.|+||+..+++++.++.+|...|++++|++ .++
T Consensus 423 Dl~e~----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ 498 (519)
T KOG0293|consen 423 DLEEN----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMF 498 (519)
T ss_pred ecchh----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHh
Confidence 99955 5667777776543 333443 35899999999999999999999999999999999999994 589
Q ss_pred EEEeCCCcEEEEEcCC
Q 016224 327 LSCSLDKTIKVWFATD 342 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~ 342 (393)
|+++.||+|+||....
T Consensus 499 ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSD 514 (519)
T ss_pred hccCCCCeEEEecCCc
Confidence 9999999999997653
No 82
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=4e-23 Score=196.39 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=162.8
Q ss_pred ceeecceEEeeEec-C--cEEEecCCCeEEEEECCCCc------EEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEE
Q 016224 106 AVIKTDILCRNWVQ-G--NCMYGEKCKFLHSWTVGDGF------KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVR 175 (393)
Q Consensus 106 ~~~~~~i~c~~~~~-~--~~~~g~~dg~i~vwd~~~~~------~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~ 175 (393)
..|..+|.+++|++ + .+++|+.|++|++||+.++. +.+..+.+|...|.+|+|+|++ ++|++++.|++|+
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 45778999999997 3 46789999999999997541 3567899999999999999975 7999999999999
Q ss_pred EEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224 176 VWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (393)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v 253 (393)
|||+++++.+..+ ..|...|.+++|+++ +|++++.|+.|++
T Consensus 152 IWDl~tg~~~~~l-------------------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 152 VWDVERGKAVEVI-------------------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EEECCCCeEEEEE-------------------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 9999987755433 467788999999988 8999999999999
Q ss_pred EEeccCCccccCceeecCceeeE-EEEEEc--CCEEEEec----CCCcEEEeeCCCcc-eeeEeccCcc-ceEEEEEc--
Q 016224 254 WKFNVTTNCFEPAASLKGHSLAV-VSLVVG--ANKLYSGS----MDNSIRVWNLETLQ-CIQTLTEHTS-VVMSLLCW-- 322 (393)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~sg~----~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~l~~~-- 322 (393)
||++++ +.+..+..|.... ..+.|. ++.+++++ .|+.|++||+++.. ++.....+.. .+....|+
T Consensus 195 wD~rsg----~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d 270 (493)
T PTZ00421 195 IDPRDG----TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED 270 (493)
T ss_pred EECCCC----cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC
Confidence 999986 4455666776543 234443 45666543 47999999998754 4444443333 34444454
Q ss_pred CCEEEEEe-CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224 323 DQFLLSCS-LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366 (393)
Q Consensus 323 ~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 366 (393)
+++|++++ .|+.|++||+.++...... ..........+++.|.
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~-~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFCS-SYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEEe-eccCCCCCcceEeccc
Confidence 66788777 5999999999877654432 2223334667777764
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=5.2e-25 Score=191.83 Aligned_cols=248 Identities=19% Similarity=0.287 Sum_probs=199.2
Q ss_pred CcccCCCCCCCcccccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE
Q 016224 90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS 167 (393)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s 167 (393)
.-|+....+...+..-...-+.|+.+.|..+ .+++++.|+.+++|++++. +..++|.+|++.|+++.|......+++
T Consensus 200 k~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVs 278 (459)
T KOG0288|consen 200 KLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVS 278 (459)
T ss_pred hhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch-hhhhhhcccccceeeehhhccccceee
Confidence 4566655554455555566678999999755 4567999999999999998 999999999999999999887777999
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEE
Q 016224 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA 244 (393)
Q Consensus 168 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~ 244 (393)
|+.|.+|++||+....|.+++........+......+++| .|+.|++||+++..........+.|+++..+.+ .|++
T Consensus 279 gs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 279 GSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS 358 (459)
T ss_pred ccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEee
Confidence 9999999999999999998887776665555555566666 889999999999988866666679999999888 7888
Q ss_pred EeCCCcEEEEEeccCCcc--ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccc--eEEEE
Q 016224 245 GTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV--VMSLL 320 (393)
Q Consensus 245 ~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~ 320 (393)
.+.|.++.+.|+++.... +.......+|.-.-..+++++.|+++|+.||.|+||++.++++...+...... |+++.
T Consensus 359 ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 899999999999986321 11111122333333445556779999999999999999999999988765554 99999
Q ss_pred Ec--CCEEEEEeCCCcEEEE
Q 016224 321 CW--DQFLLSCSLDKTIKVW 338 (393)
Q Consensus 321 ~~--~~~l~s~s~dg~i~iw 338 (393)
|+ |..|++++.++.+.+|
T Consensus 439 W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EcCCCchhhcccCCcceEec
Confidence 98 7899999999999999
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.1e-23 Score=176.18 Aligned_cols=240 Identities=15% Similarity=0.211 Sum_probs=189.4
Q ss_pred cceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC--EEEEEeCCCcEEEEECCCC
Q 016224 105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~--~l~s~s~dg~v~iwd~~~~ 182 (393)
...|..+|+|++.+.--+++|+.|-+|+|||+... ..+..+-.|.+.|+++.|.+... .|++|+.||.|.+|+...-
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 45578899999999999999999999999999988 77778888999999999988654 8999999999999999887
Q ss_pred eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~ 260 (393)
+++..+ ..|..+|+.++++|. +-++.+.|+.++.||+-.+.
T Consensus 118 ~~~~sl-------------------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 118 ELLKSL-------------------------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred EEeeee-------------------------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 766554 578888999999998 77788999999999998875
Q ss_pred ccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEE
Q 016224 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWF 339 (393)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd 339 (393)
..+. ..+. +......+...|++|+.+..+ .|-+|.+.+-.....+... ..+.++.|. +..|++|..|+.|++||
T Consensus 161 ~a~v--~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 161 VAFV--LNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred ccee--eccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEec
Confidence 4322 2222 333333334457788887765 5889999887766665533 456666666 78999999999999999
Q ss_pred cCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 340 ATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
..+...+..+..|... |-++.+.-+ +...+|+|+|+||.|++||++.-
T Consensus 236 ~ds~~~~~~~~AH~~R--VK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 236 TDSDTPLTEFLAHENR--VKDIASYTN-PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCCccceeeecchhh--eeeeEEEec-CCceEEEEeccCceEEEEEcccc
Confidence 9887777777777765 555553332 23349999999999999999765
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.7e-23 Score=173.65 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=186.8
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe-CC-CEEEEEcCCeEEEEECCCCceeeec
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EG-PWIFIGVTNFVKAWNTQTNTDLSLS 226 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~~i~v~d~~~~~~~~~~ 226 (393)
.+..|++|.|+|.++.|+.+++||++++||+...+....+.+..++..... +. ..++.+.|+.|+.+|+.++....+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence 478999999999999999999999999999999988888888888765543 33 4555569999999999999999999
Q ss_pred CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcc
Q 016224 227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ 304 (393)
Q Consensus 227 ~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~ 304 (393)
.|...|.+|.+.+. .+++|+.|++|++||.+.. .....+. ....|.++...++.|++|+.|..|.+||+++..
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccc----ccccccc-cCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 99999999999954 9999999999999999974 2233333 334899999999999999999999999999866
Q ss_pred eeeEec--cCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC----cceEEEEeecC-------CccEEEEEeeeCCCC
Q 016224 305 CIQTLT--EHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS----GNLEVTYTHNE-------EHGVLALCGMPDSEG 369 (393)
Q Consensus 305 ~~~~~~--~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~~~~~~~ 369 (393)
...... .-+-.+.++++.+ .-.++++-||.|.+=.+... .+...+..|.. -.+|.+++|+|-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~- 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG- 245 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-
Confidence 543222 2344567777764 56888999999888665544 22233333322 24688999999866
Q ss_pred CcEEEEEeCCCeEEEEeCCcee
Q 016224 370 KPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 370 ~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
.|+||+.||.|.+||+.+.+
T Consensus 246 --tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 246 --TFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred --eEEecCCCceEEEccCcchh
Confidence 89999999999999997653
No 86
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=5.5e-23 Score=196.49 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=163.3
Q ss_pred cceeecceEEeeEecC---cEEEecCCCeEEEEECCCCc-------EEEEEecCCcCCEEEEEecCCCCE-EEEEeCCCc
Q 016224 105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDET 173 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~-------~~~~~l~~h~~~I~~i~~s~~~~~-l~s~s~dg~ 173 (393)
...|..+|.+++|+++ .+++|+.|++|+|||+.++. ..+..+.+|...|.+++|+|++.. |++++.|++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3457789999999974 46689999999999997541 234578899999999999998875 579999999
Q ss_pred EEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI 251 (393)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I 251 (393)
|+|||+.+++.+..+ .+...|.+++|+++ +|++++.|+.|
T Consensus 150 IrIWDl~tg~~~~~i--------------------------------------~~~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 150 VNIWDIENEKRAFQI--------------------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred EEEEECCCCcEEEEE--------------------------------------ecCCcEEEEEECCCCCEEEEEecCCEE
Confidence 999999988755332 13456899999987 88889999999
Q ss_pred EEEEeccCCccccCceeecCceeeEEEEE-------EcCCEEEEecCCC----cEEEeeCCC-cceeeEeccCc--cceE
Q 016224 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLV-------VGANKLYSGSMDN----SIRVWNLET-LQCIQTLTEHT--SVVM 317 (393)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~-------~~~~~l~sg~~dg----~i~iwd~~~-~~~~~~~~~~~--~~v~ 317 (393)
++||++++ +.+..+.+|...+.+.. .++++|++++.|+ .|+|||+++ .+++..+..+. ..+.
T Consensus 192 rIwD~Rsg----~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 192 HIIDPRKQ----EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI 267 (568)
T ss_pred EEEECCCC----cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence 99999987 45567778876543221 2456888877664 799999995 56666554332 2222
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224 318 SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (393)
Q Consensus 318 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 367 (393)
..... +.++++|+.|+.|++|++..+ .+..+.......+...++|+|..
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEccCC-cEEeecccccCCCccceEEcccc
Confidence 22222 668999999999999999765 34444444455667788888863
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=173.25 Aligned_cols=239 Identities=15% Similarity=0.204 Sum_probs=191.1
Q ss_pred EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---ce--EEEEe--CCCEEEEEcCCeEEEEE
Q 016224 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG---EV--GCMIS--EGPWIFIGVTNFVKAWN 216 (393)
Q Consensus 144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~~--~~~~~--~~~~l~~~~~~~i~v~d 216 (393)
+.+++|...|.+|+|+.+|..|++|+.|+++++|+++..+........+ .+ .++.+ ...+.+++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678899999999999999999999999999999998875554443222 22 22222 34445556889999999
Q ss_pred CCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224 217 TQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD 292 (393)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d 292 (393)
++.++..........-.-+.|+|+ +++++..|..|.+.|.++... ... ......+..++|+ +++|+....-
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~----~~~-~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI----VNE-EQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccce----eeh-hcccceeeeeeecCCCCEEEEecCC
Confidence 999998866666666667788887 999999999999999987632 222 2233445555554 6677777778
Q ss_pred CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (393)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 370 (393)
|+|.|......++++++++|.....||.|+ |++||+|+.|-.+.+||+.+.-++..+..+.-+ |..+.|+.++.
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp--VRTlSFS~dg~-- 244 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP--VRTLSFSHDGR-- 244 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc--eEEEEeccCcc--
Confidence 999999999999999999999999999998 789999999999999999888887777766554 88999988766
Q ss_pred cEEEEEeCCCeEEEEeCCceee
Q 016224 371 PVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 371 ~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+|+++|+|..|-|=++++|.-
T Consensus 245 -~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 245 -MLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred -eeeccCccceEEeEecccCCe
Confidence 999999999998888888753
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=5.9e-25 Score=186.09 Aligned_cols=207 Identities=21% Similarity=0.368 Sum_probs=178.9
Q ss_pred CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecC
Q 016224 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (393)
Q Consensus 148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~ 227 (393)
+.++.+.|..|+||+++|++|+.||-|.+||..+|+..+.++... .-.+.-
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-----------------------------qd~fMM 261 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----------------------------QDNFMM 261 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------hcceee
Confidence 456778899999999999999999999999999998765443211 113445
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec-CceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (393)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~ 302 (393)
+...|.|+.|+.| +|++|+.||.|++|.++++ .++..+. .|...|+++.|+ +..+++++.|.++++--+.+
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecc----hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 7789999999998 9999999999999999998 5566665 799999999996 55899999999999999999
Q ss_pred cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224 303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (393)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg 380 (393)
|++++.|++|...|+...|. |.++++++.||+|++|+.++.+++..+.....+..+..+...|..+. .++.+...+
T Consensus 338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--h~iVCNrsn 415 (508)
T KOG0275|consen 338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--HFIVCNRSN 415 (508)
T ss_pred chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc--eEEEEcCCC
Confidence 99999999999999999997 78999999999999999999999999888888888999988887654 577777888
Q ss_pred eEEEEeCCc
Q 016224 381 SVRFYDLPS 389 (393)
Q Consensus 381 ~I~iwd~~s 389 (393)
+|+|-++..
T Consensus 416 tv~imn~qG 424 (508)
T KOG0275|consen 416 TVYIMNMQG 424 (508)
T ss_pred eEEEEeccc
Confidence 999988753
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=184.85 Aligned_cols=240 Identities=20% Similarity=0.369 Sum_probs=194.9
Q ss_pred EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE-e-------------cC-----Cce--EEEEeCC
Q 016224 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI-N-------------LG-----GEV--GCMISEG 201 (393)
Q Consensus 143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-------------~~-----~~~--~~~~~~~ 201 (393)
...+..|.-+|++++++|+..++++++.|++|.-|++.+++....+ + .+ ..+ .++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5667789999999999999999999999999999999988744111 1 01 112 3345799
Q ss_pred CEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE
Q 016224 202 PWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (393)
Q Consensus 202 ~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~ 277 (393)
++|++| .|..|.||+.++.+.+ .+.+|.+.|.+++|-.. .|++++.|.+|++|++... ..+.++.+|+..|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDGVL 290 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCcccee
Confidence 999987 6778999999999988 67999999999999654 9999999999999999876 66788899999999
Q ss_pred EEEEcC-CE-EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeec-
Q 016224 278 SLVVGA-NK-LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN- 353 (393)
Q Consensus 278 ~l~~~~-~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~- 353 (393)
.|..-. .. +-+|+.|.++++|++.. +....+.+|.+.+-|++|- ...+++||.+|.|.+|++.+.+.+.......
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred eechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 998753 34 55566999999999943 3445677888899999987 6799999999999999998776655443211
Q ss_pred ---------CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 354 ---------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 354 ---------~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
....+.+++..|.++ ++++|+.+|.|++|.+.++
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sd---L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSD---LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCCccccccccceeeeEecccCc---eEEecCCCCceEEEEecCC
Confidence 112688888888777 9999999999999999876
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.4e-24 Score=200.93 Aligned_cols=241 Identities=14% Similarity=0.225 Sum_probs=174.2
Q ss_pred EEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-----------CceEEEEeC-----CCEE
Q 016224 142 LLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-----------GEVGCMISE-----GPWI 204 (393)
Q Consensus 142 ~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~~-----~~~l 204 (393)
..+.++ +|.+.|.+|.|++||+|||+|+.|+.|+||.+...+....-... ..+...... ++..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344566 89999999999999999999999999999998763331111000 000000000 0111
Q ss_pred EE--Ec-CCeE----EEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224 205 FI--GV-TNFV----KAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (393)
Q Consensus 205 ~~--~~-~~~i----~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v 276 (393)
.. +. ...+ +++-+.......+.+|.+.|.+|.|+.+ +|++++.|.+|++|++... +++..+. |...|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----~CL~~F~-HndfV 412 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----ECLKVFS-HNDFV 412 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----ceeeEEe-cCCee
Confidence 11 11 1111 1112222223378899999999999998 9999999999999999876 5566654 99999
Q ss_pred EEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224 277 VSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT 351 (393)
Q Consensus 277 ~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 351 (393)
+|++|+ .++|++|+-|+.||||++...+.+.-...+ ..|+++++. |++.+.|+.+|..++|+....+.......
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 999996 569999999999999999987776665554 789999988 88999999999999999876654433332
Q ss_pred ecC------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 352 HNE------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 352 ~~~------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
+.. ...|+.+.|.|..++ .|++.+.|..|||+|+++-
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred eeccCccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccch
Confidence 211 236999999987665 4777778999999999554
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.7e-23 Score=172.17 Aligned_cols=259 Identities=16% Similarity=0.198 Sum_probs=201.1
Q ss_pred CCCCcceeeccCCCC--CCCCCCCCCCcccCCCCCCCcccccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcE
Q 016224 66 ANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFK 141 (393)
Q Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~ 141 (393)
.+....+.++|.... ..++..+.-+.|...............|..++.|++|+.+ ..++|+.|+.+++||+.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-- 104 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-- 104 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--
Confidence 445556666664443 2345555556776655433333556678889999999977 4668999999999999998
Q ss_pred EEEEecCCcCCEEEEEecCCCC--EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECC
Q 016224 142 LLTQLEGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQ 218 (393)
Q Consensus 142 ~~~~l~~h~~~I~~i~~s~~~~--~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~ 218 (393)
.+.++..|.++|.++.|-+... .|+|||+|++|+.||.+....+.++.+++.+-++.-...+++++ .++.|.+|+++
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 4556778999999999976554 89999999999999999999999999999998888777777776 78899999998
Q ss_pred CCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCce---------eeEEEEEEcCC
Q 016224 219 TNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS---------LAVVSLVVGAN 284 (393)
Q Consensus 219 ~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~ 284 (393)
.+... ......-++.+++...+ ..+.|+-+|.+.+..+..... +.-..++.|. -.|.+|+|.+.
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~ 262 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV 262 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecc
Confidence 76543 33345567888887665 779999999999999887533 2233444443 35677788754
Q ss_pred --EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEE
Q 016224 285 --KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS 328 (393)
Q Consensus 285 --~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s 328 (393)
.|+|++.||++.+||-.....+.+.+.|..+|++..|+ |.+++-
T Consensus 263 hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 263 HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence 69999999999999999888999999999999999998 555553
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.5e-23 Score=192.03 Aligned_cols=235 Identities=27% Similarity=0.471 Sum_probs=191.3
Q ss_pred cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE------EEE-eC-CCEEEEEcCCe
Q 016224 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG------CMI-SE-GPWIFIGVTNF 211 (393)
Q Consensus 140 ~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~------~~~-~~-~~~l~~~~~~~ 211 (393)
+++.+++.+|+..|..+++.+. ..++++|.||++++|+-..++.+.......+.. +.. .+ +++++.+.|..
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 4788899999999999988654 479999999999999987666555333222211 112 23 44555669999
Q ss_pred EEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEEE
Q 016224 212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYS 288 (393)
Q Consensus 212 i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s 288 (393)
|.+|...+...+ .+.+|...|.++....+ .+++|+.|.++++|.... +...+.+|+..|.++..- .+.++|
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~------l~~~l~gH~asVWAv~~l~e~~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE------LVYSLQGHTASVWAVASLPENTYVT 156 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh------hhcccCCcchheeeeeecCCCcEEe
Confidence 999999998887 89999999999998777 889999999999997654 345689999999998764 558999
Q ss_pred ecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC-EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367 (393)
Q Consensus 289 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 367 (393)
|+.|.+|++|.- ++.+++|.+|...|..+++-+. .+++++.||.|++|++ +++.+....+|... +.++...++.
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~--vYsis~~~~~ 231 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF--VYSISMALSD 231 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceE--EEEEEecCCC
Confidence 999999999985 7889999999999999998854 9999999999999999 67777777776654 7777654444
Q ss_pred CCCcEEEEEeCCCeEEEEeCCc
Q 016224 368 EGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 368 ~~~~~l~s~s~dg~I~iwd~~s 389 (393)
. .++++++|++++||+...
T Consensus 232 ~---~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 232 G---LIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred C---eEEEecCCceEEEeecCc
Confidence 4 899999999999999763
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=6.6e-23 Score=189.75 Aligned_cols=271 Identities=17% Similarity=0.231 Sum_probs=206.1
Q ss_pred ceEEeeEec--CcEEEecCCCeEEEEECCCCcEE--EEEecCCcCCEEEEEecCC-----------CCEEEEEeCCCcEE
Q 016224 111 DILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKL--LTQLEGHQKVVSGITLPSG-----------SDKLYSGSKDETVR 175 (393)
Q Consensus 111 ~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~~~~--~~~l~~h~~~I~~i~~s~~-----------~~~l~s~s~dg~v~ 175 (393)
+...+.|.+ +.+...-.|..|+|||+.+-.+. ...+--|...|+++.--|- ...++|++.|++|+
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 445556663 34556788999999999865222 2344459999998876551 13589999999999
Q ss_pred EEECCCCeEEEEEe--------------------------------------c--CCceEEEEeCCCEEEEE-cCCeEEE
Q 016224 176 VWDCASGQCAGVIN--------------------------------------L--GGEVGCMISEGPWIFIG-VTNFVKA 214 (393)
Q Consensus 176 iwd~~~~~~~~~~~--------------------------------------~--~~~~~~~~~~~~~l~~~-~~~~i~v 214 (393)
+||++.+..-..+. . +-...++.+++++|++| .-|.+++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 99997532111110 0 00123445789999998 5569999
Q ss_pred EECCCCcee-eecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEE----------
Q 016224 215 WNTQTNTDL-SLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS---------- 278 (393)
Q Consensus 215 ~d~~~~~~~-~~~~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~---------- 278 (393)
|++..-+.. .+..|..+|.|+.|+.. +|++++.|.-|.|||.... +.++.++.+|...|++
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---y~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---cchhhhhcccccceeEEEEeecCCce
Confidence 999988776 88899999999999754 8999999999999998654 2444444444444433
Q ss_pred ---------------------------------------EEEcC--CEEEEecCCCcEEEeeCCCcceeeEecc---Ccc
Q 016224 279 ---------------------------------------LVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTE---HTS 314 (393)
Q Consensus 279 ---------------------------------------l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~ 314 (393)
++.++ +++++++.|..|+|||+++++..+.|++ |.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 33332 3688999999999999999999999985 545
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 315 VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 315 ~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
....+..+ +-||++...|.++.++|..+++++....+|.+. |+.+.|.+|-. .|++.+.||.|.||.++.
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~--VTG~kF~nDCk---HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA--VTGVKFLNDCK---HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh--eeeeeecccch---hheeecCCceEEEEECch
Confidence 55555555 789999999999999999999999999988876 99999988766 899999999999999975
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.9e-24 Score=180.14 Aligned_cols=221 Identities=17% Similarity=0.288 Sum_probs=173.3
Q ss_pred EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE---EEEecCCceEEEEeCCCEEEEEcCCeEEEEECCC
Q 016224 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA---GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT 219 (393)
Q Consensus 143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~ 219 (393)
...+..|++++.+-+|++||.++|||+.|..|+|.|++..-.. ..+..+ +.+.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~------------------------~~qa 160 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG------------------------DTQA 160 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC------------------------Cccc
Confidence 3567789999999999999999999999999999998732111 011000 0111
Q ss_pred C-c-eeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224 220 N-T-DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN 293 (393)
Q Consensus 220 ~-~-~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg 293 (393)
. . ..++..|.++|+++.|+|. +|++++.|++|++||+..... +..........+|.+++|. |++|+.|....
T Consensus 161 ~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa--KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 161 RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA--KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH--HHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence 1 1 1267889999999999998 999999999999999986532 1112222234567777764 78999999999
Q ss_pred cEEEeeCCCcceeeEe---ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 294 SIRVWNLETLQCIQTL---TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 294 ~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
++++||+++.++...- ..|.+.|+++.++ +++.++++.||.|+|||--+.+++..+........|.+..|..++.
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence 9999999998886554 4689999999998 7899999999999999998888888777666666677777766544
Q ss_pred CCcEEEEEeCCCeEEEEeCCceee
Q 016224 369 GKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+|++++.|..|++|++.++.+
T Consensus 319 ---yiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 319 ---YILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ---EEeecCCcceeeeeeecCCce
Confidence 999999999999999999865
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=179.76 Aligned_cols=257 Identities=21% Similarity=0.361 Sum_probs=199.7
Q ss_pred CeEEEEECCCCcEEEEEecCC-cCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEE-EEecCCceEEEE--eCCCE
Q 016224 129 KFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAG-VINLGGEVGCMI--SEGPW 203 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h-~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~--~~~~~ 203 (393)
..+.+||+.+| ..+.++++- ...-.++..- ...+++++. .-..|.+|.+....... .+-.++.+.++. +.|.+
T Consensus 18 ~~~~~~dl~TG-t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 18 INCIVWDLRTG-TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred cceeEEecCCC-ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 35899999999 555566654 2222222221 235666654 34689999997765444 555666777765 57889
Q ss_pred EEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC-----CccccCceeecCcee
Q 016224 204 IFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT-----TNCFEPAASLKGHSL 274 (393)
Q Consensus 204 l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~-----~~~~~~~~~~~~~~~ 274 (393)
+++| ..+.|++|.+.+|..+ .+..|-..|+++.|+.| +|++|+.||.|.+|.+..- ....++...+..|.-
T Consensus 96 l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL 175 (476)
T ss_pred EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc
Confidence 9988 8899999999999988 77899999999999988 9999999999999987542 113467888999999
Q ss_pred eEEEEEEcC----CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc----
Q 016224 275 AVVSLVVGA----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG---- 344 (393)
Q Consensus 275 ~v~~l~~~~----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~---- 344 (393)
+|+.+.... .+|++++.|.++++||+..+.++.++. ....+.+++.+ +..++.|+.+|.|.+.++....
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 999998862 389999999999999999999988886 45577888888 6789999999999998775432
Q ss_pred ------------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 345 ------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 345 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
....+.+|.....|++++.+.|+. +|++|+.||.|+|||+.+..
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt---lLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGT---LLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCcc---EEEeeCCCCCEEEEecchHH
Confidence 234455566656788888887776 99999999999999998754
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=9.3e-22 Score=185.17 Aligned_cols=277 Identities=17% Similarity=0.263 Sum_probs=214.3
Q ss_pred eEEeeEec---CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224 112 ILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (393)
Q Consensus 112 i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (393)
|+.+..-+ +.++.|+..|.+.+|++.++ +.+.+++++.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+.++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 66655432 46788999999999999999 999999999999999999998889999999999999999999999999
Q ss_pred ecC-CceEEEEe--CCCE-EEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224 189 NLG-GEVGCMIS--EGPW-IFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 189 ~~~-~~~~~~~~--~~~~-l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~ 259 (393)
+.. +.+..+.. ||.. ++++ ..|.+.+||++..+.+ ....|.+.|....|-+. .+++++.|..+++|=..++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 986 77766653 5654 4455 4579999999998877 44478788888888766 8888888888777744311
Q ss_pred Ccc----------------------------------------------------------------c-------cCc--
Q 016224 260 TNC----------------------------------------------------------------F-------EPA-- 266 (393)
Q Consensus 260 ~~~----------------------------------------------------------------~-------~~~-- 266 (393)
... + .++
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 000 0 000
Q ss_pred ------------------------------------eeec-----CceeeEEEE--EEcCCEEEEecCCCcEEEeeCCCc
Q 016224 267 ------------------------------------ASLK-----GHSLAVVSL--VVGANKLYSGSMDNSIRVWNLETL 303 (393)
Q Consensus 267 ------------------------------------~~~~-----~~~~~v~~l--~~~~~~l~sg~~dg~i~iwd~~~~ 303 (393)
..+. .....+.++ ++.|++.+.|+..|.|.+|++++|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0000 011233444 445899999999999999999999
Q ss_pred ceeeEe---ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE----------------------------
Q 016224 304 QCIQTL---TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY---------------------------- 350 (393)
Q Consensus 304 ~~~~~~---~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------------------------- 350 (393)
-...+| ..|..+|+.++.+ ++.+++++.+|-+++||..+...+..+.
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 999998 5899999999999 6789999999999999987543111100
Q ss_pred --e---------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 351 --T---------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 351 --~---------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
. ..+...+++++|+|++. +|++++.|++|++||++++.+
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~Dgr---WlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGR---WLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCc---EEEEeecCCcEEEEeccCcce
Confidence 0 11335688999988776 999999999999999999876
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=182.78 Aligned_cols=232 Identities=21% Similarity=0.314 Sum_probs=182.4
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-e
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-S 224 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~ 224 (393)
.+.|++|+|+|...+=+.....-.|.||+..+....+++. -.....++-++|+++++| ..|.|++||+.+...+ .
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 4689999999965433222333589999988876665443 222334556799999998 6789999996665444 8
Q ss_pred ecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEe
Q 016224 225 LSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVW 298 (393)
Q Consensus 225 ~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iw 298 (393)
+..|..+|..+.|++. .|++|+.|+.+++||+.+.. ....+.+|+..|.+.++.+ .++++|+.||+|++|
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8999999999999986 89999999999999999873 3568899999999999863 489999999999999
Q ss_pred eCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe-ecCCccEEEEEeeeCCCCCcEEE
Q 016224 299 NLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLL 374 (393)
Q Consensus 299 d~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~ 374 (393)
|++.. ..+.++. |..+|.++.+- |..+++++ ...|+|||+.++.++..... |.. .|+++.+..++. .|+
T Consensus 182 DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~---rLl 254 (487)
T KOG0310|consen 182 DTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDST---RLL 254 (487)
T ss_pred EeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccc--eEEEEEeecCCc---eEe
Confidence 99987 6666665 88899888886 46777765 45899999987766544443 444 588888876554 899
Q ss_pred EEeCCCeEEEEeCCceee
Q 016224 375 CSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 375 s~s~dg~I~iwd~~s~~l 392 (393)
+++-|+.|++||+.+.++
T Consensus 255 S~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred ecccccceEEEEccceEE
Confidence 999999999999888765
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=8.5e-23 Score=197.62 Aligned_cols=257 Identities=20% Similarity=0.251 Sum_probs=196.5
Q ss_pred eecceEEeeEecCcEE--Eec--CCCeEEEEECCC-----------CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC
Q 016224 108 IKTDILCRNWVQGNCM--YGE--KCKFLHSWTVGD-----------GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172 (393)
Q Consensus 108 ~~~~i~c~~~~~~~~~--~g~--~dg~i~vwd~~~-----------~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg 172 (393)
+...|..+..+++... +|+ .|+.++||+.+. -.+.+.++..|.+.|+|+.|++||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 3446889999988544 577 788899998751 1245667788999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250 (393)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~ 250 (393)
.|.||+......-..+.. .|....+.-|. ....+.+|...|..++|+|+ +|++++.|++
T Consensus 92 ~v~iW~~~~~~~~~~fgs---------------~g~~~~vE~wk----~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGS---------------TGGAKNVESWK----VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS 152 (942)
T ss_pred eEEEeeecccCCcccccc---------------cccccccceee----EEEEEecCCCccceeccCCCccEEEEecccce
Confidence 999999875110000100 00011111121 12267889999999999998 9999999999
Q ss_pred EEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce-----------------------
Q 016224 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC----------------------- 305 (393)
Q Consensus 251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~----------------------- 305 (393)
|.+||..+. +.+..+.+|...|..+.|| |++|++-+.|++|+||++.+...
T Consensus 153 Viiwn~~tF----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 153 VIIWNAKTF----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred EEEEccccc----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 999998875 7788999999999999998 67999999999999999654211
Q ss_pred -----------------------------eeEeccCccceEEEEEcC-------C------------EEEEEeCCCcEEE
Q 016224 306 -----------------------------IQTLTEHTSVVMSLLCWD-------Q------------FLLSCSLDKTIKV 337 (393)
Q Consensus 306 -----------------------------~~~~~~~~~~v~~l~~~~-------~------------~l~s~s~dg~i~i 337 (393)
-..|-+|..++.++.|++ + .+|+|+.|++|.|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 122457899999999972 2 5789999999999
Q ss_pred EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
|.....+.+..... -....|..++|+|++- .|+.+|.||+|.+..++..+
T Consensus 309 W~T~~~RPl~vi~~-lf~~SI~DmsWspdG~---~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 309 WNTALPRPLFVIHN-LFNKSIVDMSWSPDGF---SLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EecCCCCchhhhhh-hhcCceeeeeEcCCCC---eEEEEecCCeEEEEEcchHH
Confidence 99866665544433 3345699999998876 79999999999999987654
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=3.7e-24 Score=175.23 Aligned_cols=234 Identities=18% Similarity=0.213 Sum_probs=186.1
Q ss_pred cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
...|+..|.......+- ..+++.|=+-+|||.-++ ..++.++ |+..|.+++|+.|.++|+||+.+..++|||++..
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tg-delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p 132 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG-DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP 132 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh-hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence 45577788777776553 346888999999999999 7777776 9999999999999999999999999999999875
Q ss_pred eE-EEEEe-cCCceEE--EE-eCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEe
Q 016224 183 QC-AGVIN-LGGEVGC--MI-SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKF 256 (393)
Q Consensus 183 ~~-~~~~~-~~~~~~~--~~-~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~ 256 (393)
+. ...+. +...+.. +. .+..+|.++.|++|++||.+++..+........|+++.++++ .+++....+.|.+||.
T Consensus 133 ~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwda 212 (334)
T KOG0278|consen 133 KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDA 212 (334)
T ss_pred CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecc
Confidence 42 22232 2233332 22 355555567889999999999999987788889999999998 8888888999999998
Q ss_pred ccCCccccCceeecCceeeEEE--EEEcCCEEEEecCCCcEEEeeCCCcceeeEe-ccCccceEEEEEc--CCEEEEEeC
Q 016224 257 NVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSVVMSLLCW--DQFLLSCSL 331 (393)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~--~~~l~s~s~ 331 (393)
.+- .+++..+ -...|.+ +.++.+.+++|+.|..++.||..+++.+..+ ++|.++|.++.|+ |...++||.
T Consensus 213 ksf----~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 213 KSF----GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ccc----cceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC
Confidence 775 4444433 2334444 4445568999999999999999999999996 8999999999999 678999999
Q ss_pred CCcEEEEEcCCCcc
Q 016224 332 DKTIKVWFATDSGN 345 (393)
Q Consensus 332 dg~i~iwd~~~~~~ 345 (393)
||+|+||.....+.
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999998764443
No 100
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-21 Score=179.22 Aligned_cols=278 Identities=15% Similarity=0.219 Sum_probs=214.3
Q ss_pred ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
.-...+|+|++|+.. .++.+-.+|.|.+|++..++-+...+.++. ..|.+|+|+ ++.+|++.+.+|.|.-||+.++
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 344569999999854 456788999999999999877788888875 789999999 5668999999999999999999
Q ss_pred eEEEEEecCCce---EEEEeCCCEEEEE-cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224 183 QCAGVINLGGEV---GCMISEGPWIFIG-VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253 (393)
Q Consensus 183 ~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v 253 (393)
+....+...+.. .++.+.+..+++| .||.+..++...++.. .+....+.|.+++|+++ .+++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 998888766543 2334677778877 7788888888887765 44556789999999998 6999999999999
Q ss_pred EEeccCCccccCcee---ec-CceeeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224 254 WKFNVTTNCFEPAAS---LK-GHSLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL 326 (393)
Q Consensus 254 wd~~~~~~~~~~~~~---~~-~~~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l 326 (393)
||...+......... +. ....-|.++.+ ..+.|++|..-|+|++||...+.+++.+..|.+.|.+++.. ++++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 999887542211111 11 13334555554 47799999999999999999999999999999999999988 5799
Q ss_pred EEEeCCCcEEEEEcCCCcceEE--EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 327 LSCSLDKTIKVWFATDSGNLEV--TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
++++.|++|.-|...+...... .....+...+.+++..++ .|++|+.|..+.+=....
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----eEEecceeeEEEEccccc
Confidence 9999999999998866544111 111222334777766554 799999999888755543
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-20 Score=159.58 Aligned_cols=270 Identities=12% Similarity=0.120 Sum_probs=204.2
Q ss_pred ecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeE
Q 016224 109 KTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQC 184 (393)
Q Consensus 109 ~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~--dg~v~iwd~~~~~~ 184 (393)
...|.++.|++++ +++.+.|..|+|||..++ +.++++..++-.|..++|......++.++. |.+|+.-++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 3488999999774 445788889999999999 889999989999999999776666776666 89999999999999
Q ss_pred EEEEecCCceEE-E--Ee-CCCEEEEEcCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224 185 AGVINLGGEVGC-M--IS-EGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 185 ~~~~~~~~~~~~-~--~~-~~~~l~~~~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~ 257 (393)
++.+..+..... + .+ +..+|.++.|++|++||++..+.+- +.....+ .++|+|+ ++|++.....|++||++
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEec
Confidence 999998765433 3 23 5556666799999999999777663 3222233 4567777 77777777799999999
Q ss_pred cCCccccCceeec---CceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCccce---EEEEE--cCCEEE
Q 016224 258 VTTNCFEPAASLK---GHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV---MSLLC--WDQFLL 327 (393)
Q Consensus 258 ~~~~~~~~~~~~~---~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~l~~--~~~~l~ 327 (393)
.-.. .+...+. +.......+.| +|++|+.++..+.+++.|.-+|..+.++..+...- .+..| ++++++
T Consensus 171 s~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 171 SFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL 248 (311)
T ss_pred ccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence 8643 2222222 33555666666 47799999999999999999999999998765433 33344 478999
Q ss_pred EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 328 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+|+.||+|.+|+++++.++..+.+. ....+.++.|.|-.. +++++ +..+.+|=...
T Consensus 249 ~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~---mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 249 SGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYA---MFVSA--SSNLVFWLPDE 304 (311)
T ss_pred EecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCcee---eeeec--CceEEEEeccc
Confidence 9999999999999999988887774 334577777877644 55555 55788886543
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.6e-22 Score=169.72 Aligned_cols=256 Identities=21% Similarity=0.333 Sum_probs=198.7
Q ss_pred CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE
Q 016224 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI 198 (393)
Q Consensus 120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~ 198 (393)
..+++...++++. +++++.+.+|++.|+.++.......+.+++.|.+.+||.++++.|+..+..+. .+.++.
T Consensus 125 srivssFk~~t~~-------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 125 SRIVSSFKDGTVK-------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIK 197 (481)
T ss_pred chheeeecCCcee-------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEE
Confidence 3444454555532 47888999999999999998888899999999999999999999999998764 444443
Q ss_pred --eCCCEEEEE-cCCeEEEEE------CCCCc-----------------------------------eeeecCCCCcEEE
Q 016224 199 --SEGPWIFIG-VTNFVKAWN------TQTNT-----------------------------------DLSLSGPVGQVYA 234 (393)
Q Consensus 199 --~~~~~l~~~-~~~~i~v~d------~~~~~-----------------------------------~~~~~~~~~~v~~ 234 (393)
+.+.+++++ .|++-+||. +.... ...+.+|...|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 455566554 778888886 22110 1256678888888
Q ss_pred EEEeC--CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCC-cceeeEe
Q 016224 235 MAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET-LQCIQTL 309 (393)
Q Consensus 235 l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~-~~~~~~~ 309 (393)
..|-. +.+++++.|.+..+||++++ +++..+.+|....+.++-.++ ++++.+.|.+.++||++. -..+..|
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence 87743 48999999999999999998 778899999999888777654 688999999999999984 4457889
Q ss_pred ccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 310 TEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 310 ~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
++|...|+++.|. +..+++|+.|.+|+|||+++............. +..++.+ .+.++|+.--.+..|++||+.
T Consensus 354 QGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~--~NRvavs---~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP--ANRVAVS---KGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred cccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCc--cceeEee---cCCceEEeccCCceEEEEecC
Confidence 9999999999999 889999999999999999987654443333333 4444443 344488888888999999997
Q ss_pred cee
Q 016224 389 SVI 391 (393)
Q Consensus 389 s~~ 391 (393)
...
T Consensus 429 G~R 431 (481)
T KOG0300|consen 429 GNR 431 (481)
T ss_pred CCc
Confidence 543
No 103
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2e-22 Score=173.97 Aligned_cols=224 Identities=18% Similarity=0.330 Sum_probs=179.2
Q ss_pred EecCCCeEEEEECCC---------------CcEEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224 124 YGEKCKFLHSWTVGD---------------GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGV 187 (393)
Q Consensus 124 ~g~~dg~i~vwd~~~---------------~~~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (393)
+-+..|.|+||++.. .++++.++.+|...=+.|+|||- ...|+||.--+.|++|...++.-
T Consensus 170 swse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--- 246 (440)
T KOG0302|consen 170 SWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--- 246 (440)
T ss_pred eecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce---
Confidence 345678899999752 24678899999999999999993 23588888888999999877642
Q ss_pred EecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc
Q 016224 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE 264 (393)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~ 264 (393)
.+.. ..+.+|...|-.|+|+|. .|++++.||+|+|||++.+.. +
T Consensus 247 ----------------------------~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--~ 293 (440)
T KOG0302|consen 247 ----------------------------KVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--K 293 (440)
T ss_pred ----------------------------eecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--c
Confidence 1111 234569999999999986 999999999999999998754 3
Q ss_pred CceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCC---cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEE
Q 016224 265 PAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET---LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIK 336 (393)
Q Consensus 265 ~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~ 336 (393)
.....+.|...|..|+|+.+ +|++|+.||+++|||+++ ++++.+|+.|..+|++|.|+ ...|++++.|.+|.
T Consensus 294 ~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 294 AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 34445889999999999854 799999999999999986 67889999999999999999 56899999999999
Q ss_pred EEEcCCCc----------------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 337 VWFATDSG----------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 337 iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
|||+.-.. ..+.++.|.....+-.+.|++--++ +|++.+.|| +.||.
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG--~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG--LLVSTAIDG-FNVFK 436 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC--eEEEecccc-eeEEE
Confidence 99986321 1234556666666788899887776 889888888 45554
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=8.8e-22 Score=164.95 Aligned_cols=284 Identities=19% Similarity=0.217 Sum_probs=209.2
Q ss_pred CCcccccceeecceEEeeEecC---cEEEecCCCeEEEEECCCCc-----------EEE---EEecCCcCCEEEEEecC-
Q 016224 99 NSNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF-----------KLL---TQLEGHQKVVSGITLPS- 160 (393)
Q Consensus 99 ~~~~~~~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~-----------~~~---~~l~~h~~~I~~i~~s~- 160 (393)
+..-++...|.+.|..++..+. ..++|+.||.|.+||++... +++ ..-.+|+-.|.++.|-|
T Consensus 33 n~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 33 NNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred cCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 3334556667778888877533 45689999999999998431 010 11146888999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE-----EEeCCCEEEEEcCC-eEEEEECCCCcee-eecCCCCcEE
Q 016224 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC-----MISEGPWIFIGVTN-FVKAWNTQTNTDL-SLSGPVGQVY 233 (393)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~-~i~v~d~~~~~~~-~~~~~~~~v~ 233 (393)
|..++.+++.|.+++|||..+.+....|+.++.+-. +.....++++|.++ .|++.|+..+..- .+.+|.+.|.
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 677899999999999999999999999988876533 22356677788555 9999999999877 8999999999
Q ss_pred EEEEeCC---EEEEEeCCCcEEEEEeccCCcccc-----------CceeecCceeeEEEEEEc--CCEEEEecCCCcEEE
Q 016224 234 AMAVGND---LLFAGTQDGAILAWKFNVTTNCFE-----------PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRV 297 (393)
Q Consensus 234 ~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~-----------~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~i 297 (393)
++.|+|. .|++|+.||.|++||++....++. ..+.-..|.+.+..++|. +.++++.+.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 9999997 899999999999999987643221 122244688889999985 668999999999999
Q ss_pred eeCCCcceeeE-ec--cCccce-EE--EE-EcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224 298 WNLETLQCIQT-LT--EHTSVV-MS--LL-CWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (393)
Q Consensus 298 wd~~~~~~~~~-~~--~~~~~v-~~--l~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 370 (393)
|+..+|+.... +- .|...+ .. +. .+...++---.++.+.++.+-++..+..+..|.. .+.+..+-|+-+
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~~~~fq-- 348 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAYRPDFE-- 348 (397)
T ss_pred eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEeecCchh--
Confidence 99987753211 10 111111 01 11 1123344444568899999888888888877743 477777777665
Q ss_pred cEEEEEeCCCeEEEEeC
Q 016224 371 PVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 371 ~~l~s~s~dg~I~iwd~ 387 (393)
...+|+.|+.|..|-.
T Consensus 349 -~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 349 -QCFTGDMNGNIYMWSP 364 (397)
T ss_pred -hhhccccCCccccccc
Confidence 6899999999999975
No 105
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9.5e-23 Score=179.37 Aligned_cols=245 Identities=19% Similarity=0.261 Sum_probs=180.8
Q ss_pred cccceeec----ceEEeeEec--------C-cEEEecCCCeEEEEECCC--CcEEEEE------------------ecCC
Q 016224 103 NNRAVIKT----DILCRNWVQ--------G-NCMYGEKCKFLHSWTVGD--GFKLLTQ------------------LEGH 149 (393)
Q Consensus 103 ~~~~~~~~----~i~c~~~~~--------~-~~~~g~~dg~i~vwd~~~--~~~~~~~------------------l~~h 149 (393)
+.+.+|.- .-.|++|.. + .++.|+.|..|.|||+.- ...+..+ -++|
T Consensus 163 nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gH 242 (463)
T KOG0270|consen 163 NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGH 242 (463)
T ss_pred ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccc
Confidence 34455543 346888852 2 355799999999999861 1111111 2379
Q ss_pred cCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224 150 QKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (393)
Q Consensus 150 ~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~ 228 (393)
+..|.+|+|... .+.|||||.|.+|++||+.++++..++ ..|
T Consensus 243 Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-------------------------------------~~~ 285 (463)
T KOG0270|consen 243 TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-------------------------------------THH 285 (463)
T ss_pred hHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-------------------------------------hhc
Confidence 999999999764 578999999999999999999987655 357
Q ss_pred CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC
Q 016224 229 VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET 302 (393)
Q Consensus 229 ~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~ 302 (393)
...|.++.|++. .|++|+.|++|.+.|.+..... ...-. ..+.|-.++|+ .+.+++++.||+|+-+|+|.
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-~~~wk---~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-GKEWK---FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCcccc-CceEE---eccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence 789999999887 9999999999999999964221 11112 34567777776 45799999999999999997
Q ss_pred -cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224 303 -LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (393)
Q Consensus 303 -~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~ 378 (393)
++++.++++|...|.+|+++ +.++++++.|+.|++|++..... .....+....++ -.+|.++....-+++.|+.
T Consensus 362 ~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~r-l~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 362 PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGR-LHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccc-eeecccCCCcceEEEecCc
Confidence 49999999999999999998 67999999999999999864432 222223222222 2233333333347889999
Q ss_pred CCeEEEEeCCce
Q 016224 379 DNSVRFYDLPSV 390 (393)
Q Consensus 379 dg~I~iwd~~s~ 390 (393)
.+.++|||+.+.
T Consensus 440 k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 440 KAVLRVWDIFTN 451 (463)
T ss_pred cceEEEeecccC
Confidence 999999998764
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.5e-20 Score=170.28 Aligned_cols=260 Identities=17% Similarity=0.185 Sum_probs=180.1
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCce--EEE
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEV--GCM 197 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~ 197 (393)
.+++++.|+.|++||..++ +.+..+..|.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+...... ..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 3557889999999999988 77888876654 6789999999877 56678899999999999887776544332 334
Q ss_pred EeCCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC-cEEEEEeccCCccccCceee-cC
Q 016224 198 ISEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG-AILAWKFNVTTNCFEPAASL-KG 271 (393)
Q Consensus 198 ~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~-~~ 271 (393)
.++++.++++ .++.+++||+.+.+.+........+..++++|+ +++++..++ .+.+||..+.. ..... ..
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~----~~~~~~~~ 156 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE----IVDNVLVD 156 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe----EEEEEEcC
Confidence 4677776654 478999999998876644444445788999987 777777665 46777876642 22211 12
Q ss_pred ceeeEEEEEEcCCEEE-EecCCCcEEEeeCCCcceeeEeccCcc-------ceEEEEEc--CCEEE-EEeCCCcEEEEEc
Q 016224 272 HSLAVVSLVVGANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTS-------VVMSLLCW--DQFLL-SCSLDKTIKVWFA 340 (393)
Q Consensus 272 ~~~~v~~l~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~~--~~~l~-s~s~dg~i~iwd~ 340 (393)
+......+..++.+|+ ++..++.|++||+++++.+..+..+.. ....+.++ +++++ +.+.++.|.+||+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 2222223334566665 455699999999999988776653211 12346666 56644 4455778999999
Q ss_pred CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE-eCCCeEEEEeCCceee
Q 016224 341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSVII 392 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-s~dg~I~iwd~~s~~l 392 (393)
.+.+....+. +. ..+..+.|+|++. +|+++ ..+|.|++||+.++++
T Consensus 237 ~~~~~~~~~~-~~--~~~~~~~~~~~g~---~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 237 KTYEVLDYLL-VG--QRVWQLAFTPDEK---YLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCcEEEEEE-eC--CCcceEEECCCCC---EEEEEcCCCCeEEEEECCCCcE
Confidence 8765544332 22 3477888988765 77765 5699999999998874
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=6.8e-22 Score=176.93 Aligned_cols=277 Identities=15% Similarity=0.196 Sum_probs=200.3
Q ss_pred eeecceEEeeEecC--cEEEecCCCeEEEEECCCC---cEEEEEecC-CcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG---FKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~---~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~ 180 (393)
+|...|..+.+.+. .+++|+.|.+|++||+... .+..+.|+. ....|.+++|++.+..|+..+.....+|+|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 45557888888655 5778999999999998733 222333332 34679999999999999988888899999976
Q ss_pred CCeEEEEEecC----------Cce-----EEEEe--CCCEEEEEcCCeEEEEECCCCcee-------eecCCCCcEEEEE
Q 016224 181 SGQCAGVINLG----------GEV-----GCMIS--EGPWIFIGVTNFVKAWNTQTNTDL-------SLSGPVGQVYAMA 236 (393)
Q Consensus 181 ~~~~~~~~~~~----------~~~-----~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~-------~~~~~~~~v~~l~ 236 (393)
..+.....+.. +++ .++.+ .+.+|.++.|+++++|++...+.. ...+..-.++.++
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 55544444322 222 22223 466888899999999999875532 1223456789999
Q ss_pred EeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCcee--eEEEEEEc--CCEEEEecCCCcEEEeeCCCc-ceeeEe
Q 016224 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL--AVVSLVVG--ANKLYSGSMDNSIRVWNLETL-QCIQTL 309 (393)
Q Consensus 237 ~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~ 309 (393)
|+++ +||+|+.||+|.+|+....... .....-..|.. .|++++|+ +++|++-+.|+++++||++.. +++.+.
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 9998 9999999999999998554321 12233345665 78888885 889999999999999999974 455555
Q ss_pred ccCc--cceEEEEEc--CCEEEEEeC------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224 310 TEHT--SVVMSLLCW--DQFLLSCSL------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (393)
Q Consensus 310 ~~~~--~~v~~l~~~--~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d 379 (393)
.+-. .+-+.++|+ .++|++|.. .|.+.+||..+...+..+... ...|..+.|+|.-. .|+.|+.|
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~WhpkLN---Qi~~gsgd 478 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHPKLN---QIFAGSGD 478 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecchhh---heeeecCC
Confidence 4322 234666777 457788764 577999999887777666554 45699999999765 68888899
Q ss_pred CeEEEEeCCc
Q 016224 380 NSVRFYDLPS 389 (393)
Q Consensus 380 g~I~iwd~~s 389 (393)
|.+++|-=++
T Consensus 479 G~~~vyYdp~ 488 (641)
T KOG0772|consen 479 GTAHVYYDPN 488 (641)
T ss_pred CceEEEECcc
Confidence 9999875443
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2.3e-20 Score=166.80 Aligned_cols=265 Identities=17% Similarity=0.226 Sum_probs=209.5
Q ss_pred eeecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224 107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (393)
Q Consensus 107 ~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (393)
..+..|.|++|.++ ..++|..+|.|.||+..+. +..++...|.+.|.+++.-.+|.+| ||+.|..|..|| ..-+.+
T Consensus 244 ~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k~ 320 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRKL 320 (626)
T ss_pred ccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-cccccc
Confidence 34468999999976 5778999999999999877 7777777999999999999998654 599999999999 555556
Q ss_pred EEEecCC---ceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224 186 GVINLGG---EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 186 ~~~~~~~---~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~ 259 (393)
+..+.++ .+..+.....-+.+| ..+.|..=.++.+-.+...+|......++.+|+ .|++++.|+.+++|+ ..
T Consensus 321 r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 321 RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence 6665553 455566533335555 677888888888888889999999999999887 999999999999998 22
Q ss_pred CccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcE
Q 016224 260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTI 335 (393)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i 335 (393)
++.-.. .-..++.++.|+ + .++.|+..|...+.|.++...+..-.. .+++.++.++ |.+||.|+.|+.|
T Consensus 399 ----k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 399 ----KLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred ----ceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence 222221 123344555554 5 899999999999999999666655555 8899999998 7899999999999
Q ss_pred EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
+||-+...+........-....++.+.|++|++ +|.+-+-|-.|-.|.
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~---~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ---FLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCc---eEEeccCceEEEEEc
Confidence 999998776655544433337899999998877 999999999999993
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=178.75 Aligned_cols=248 Identities=19% Similarity=0.271 Sum_probs=183.0
Q ss_pred EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE----EEEEec-C-Cce--EEEEe-CCCEEEEEcCCeE
Q 016224 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC----AGVINL-G-GEV--GCMIS-EGPWIFIGVTNFV 212 (393)
Q Consensus 142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~~-~-~~~--~~~~~-~~~~l~~~~~~~i 212 (393)
....+++|+..|+++++.|.|-+|+||+.|-+|++||+..... .+.+.. . ..+ ..... .+.+|+++.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3457789999999999999999999999999999999875422 112211 1 112 22233 4455666777889
Q ss_pred EEEECCCCcee-------------eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceee--cCcee
Q 016224 213 KAWNTQTNTDL-------------SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSL 274 (393)
Q Consensus 213 ~v~d~~~~~~~-------------~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~ 274 (393)
+++|-...+.. ...+|...+++.+|+|. .|++++.||++++||+.......+.+... .+...
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99987765533 34679999999999997 89999999999999998765433322221 23445
Q ss_pred eEEEEEEc--CCEEEEecCCCcEEEeeCCCcce---eeEeccCcc--ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc
Q 016224 275 AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTS--VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN 345 (393)
Q Consensus 275 ~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~ 345 (393)
.+++.+|+ ++.||+|..||.|.+||...... ...-++|.. .|++|.|+ |++|++-+.|+++++||++..++
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 66777776 67899999999999999865332 233356777 89999998 89999999999999999997765
Q ss_pred e-EEEEeecCCccEEEEEeeeCCCCCcEEEEEeC------CCeEEEEeCCceee
Q 016224 346 L-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSVII 392 (393)
Q Consensus 346 ~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~------dg~I~iwd~~s~~l 392 (393)
. ...........-+.++|+|+.. +|++|.. .|.+.+||-.++.+
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~k---li~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDK---LILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred chhhhcCCCccCCCCccccCCCce---EEEecccccCCCCCceEEEEeccceee
Confidence 3 3333444445567889998876 8888864 57899999877643
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=3.4e-21 Score=178.49 Aligned_cols=274 Identities=18% Similarity=0.241 Sum_probs=207.7
Q ss_pred ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEec---------------CC-----c----CCEEEEEecCCCCEEE
Q 016224 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE---------------GH-----Q----KVVSGITLPSGSDKLY 166 (393)
Q Consensus 111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~---------------~h-----~----~~I~~i~~s~~~~~l~ 166 (393)
-..|+..+..-++.|+.+|.|++++..+- ..+.++. .| . -.-.++.|++....|.
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL-~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls 340 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNPETL-DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS 340 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCcchh-hhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence 34677778888899999999999987643 2222221 01 1 1234678899889999
Q ss_pred EEeCCCcEEEEECCCCe----EEEEEec--------------CCceEEEEeCCCEEEEEcCCeEEEEECCCCc---e---
Q 016224 167 SGSKDETVRVWDCASGQ----CAGVINL--------------GGEVGCMISEGPWIFIGVTNFVKAWNTQTNT---D--- 222 (393)
Q Consensus 167 s~s~dg~v~iwd~~~~~----~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~---~--- 222 (393)
..-.|..+.|||++.-. +-..+.+ +.+.....+.+.++.++.|++|++|++.... .
T Consensus 341 cVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred EEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 99999999999998643 2222222 1222334567788899999999999987632 0
Q ss_pred --------------------------------eeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224 223 --------------------------------LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (393)
Q Consensus 223 --------------------------------~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 268 (393)
.........+.+++++|+ .|++|..-|.++||++... +....
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----~~~~~ 496 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL----EYTCF 496 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh----hhhhh
Confidence 011123346889999999 9999999999999999876 55677
Q ss_pred ecCceeeEEEEEEc-----CCEEEEecCCCcEEEeeCC-CcceeeEeccCccceEEEEEc--C-----------------
Q 016224 269 LKGHSLAVVSLVVG-----ANKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW--D----------------- 323 (393)
Q Consensus 269 ~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~--~----------------- 323 (393)
+..|...|.++.++ ..+|++++.|..|.|||+. +..+++++.+|...|+++.|. +
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr 576 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR 576 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhee
Confidence 88999999999987 2479999999999999985 466778888888888887764 1
Q ss_pred --------------------------------CEEEEEeCCCcEEEEEcCCCcceEEEEeecC-CccEEEEEeeeCCCCC
Q 016224 324 --------------------------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGK 370 (393)
Q Consensus 324 --------------------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~ 370 (393)
+++++++.|..|+|||+.++++...+.+... +.....+..-|. +
T Consensus 577 ~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS---g 653 (1080)
T KOG1408|consen 577 VNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS---G 653 (1080)
T ss_pred hhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC---c
Confidence 4799999999999999999998888876443 355666665554 4
Q ss_pred cEEEEEeCCCeEEEEeCCceee
Q 016224 371 PVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 371 ~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.||++.+.|.++.++|..++++
T Consensus 654 iY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred cEEEEeecCCceEEEEeccchh
Confidence 4999999999999999999875
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=5.1e-21 Score=168.02 Aligned_cols=233 Identities=19% Similarity=0.292 Sum_probs=190.8
Q ss_pred cccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~ 180 (393)
.....|...|+.+.++++ ..++++.|-.|+||.+... ........|..+|+.+..+|.|+||++++.|++..+.|++
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 334556778888899876 4567999999999999877 5666778899999999999999999999999999999999
Q ss_pred CCeEEEEEecCCc-----eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224 181 SGQCAGVINLGGE-----VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAI 251 (393)
Q Consensus 181 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I 251 (393)
++.++........ ...+.+||.++.+| .|+.|++||+..+... .+.+|.++|..++|+.+ +|++++.|+.|
T Consensus 334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence 9998887776422 23345788888877 7889999999998877 88899999999999998 99999999999
Q ss_pred EEEEeccCCccccCceeec-CceeeEEEEEEc--CCEEEEecCCCcEEEeeCC--CcceeeEeccCccceEEEEEc--CC
Q 016224 252 LAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLCW--DQ 324 (393)
Q Consensus 252 ~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~--~~ 324 (393)
++||++.... ...+. .....+.++.++ |.+|+.++.|=.|++++-. +.+++..+..|.+..+.+.|. .+
T Consensus 414 ~lwDLRKl~n----~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq 489 (506)
T KOG0289|consen 414 KLWDLRKLKN----FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ 489 (506)
T ss_pred EEEEehhhcc----cceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence 9999998642 22222 122357777775 7899999888777777743 567788888899899999997 57
Q ss_pred EEEEEeCCCcEEEEEc
Q 016224 325 FLLSCSLDKTIKVWFA 340 (393)
Q Consensus 325 ~l~s~s~dg~i~iwd~ 340 (393)
++++++.|..++++.+
T Consensus 490 ~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 490 YLASTSMDAILRLYAL 505 (506)
T ss_pred EEeeccchhheEEeec
Confidence 9999999999888754
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6e-22 Score=181.79 Aligned_cols=230 Identities=21% Similarity=0.349 Sum_probs=186.2
Q ss_pred cEEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEe-cCCCCEEEEEeCCCcEEEEECCCCeE--EEEEecCCceEE
Q 016224 121 NCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQC--AGVINLGGEVGC 196 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~-s~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~ 196 (393)
.+++++.|-+|++|+...+. -+..++..|++.|.|++. -++..++|||+.|+.|.|||++++.. +..+..
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~------ 160 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN------ 160 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc------
Confidence 68899999999999987652 467788999999999999 78889999999999999999998843 222210
Q ss_pred EEeCCCEEEEEcCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCce
Q 016224 197 MISEGPWIFIGVTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS 273 (393)
Q Consensus 197 ~~~~~~~l~~~~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 273 (393)
-....+ .++...|++++.++. .+++|+..+.|++||.++. +.+..+.+|+
T Consensus 161 -----------------------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~----~kimkLrGHT 213 (735)
T KOG0308|consen 161 -----------------------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC----KKIMKLRGHT 213 (735)
T ss_pred -----------------------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc----cceeeeeccc
Confidence 000112 278899999999998 8999999999999999998 5567778999
Q ss_pred eeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEeCCCcEEEEEcCCCcceEEE
Q 016224 274 LAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVWFATDSGNLEVT 349 (393)
Q Consensus 274 ~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~ 349 (393)
..|..+-.+ |+.+++++.||+|++||+...+++.++..|...|.++..++. .+++|+.||.|..=|+++......+
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 999998875 779999999999999999999999999999999999999864 7999999999999999886555555
Q ss_pred EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 350 ~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
....+ ++..+....... -+-+++.|+.|+-|.++
T Consensus 294 ck~da--Pv~~l~~~~~~~---~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 294 CKEDA--PVLKLHLHEHDN---SVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ecCCC--chhhhhhccccC---CceeeeccccceecCCc
Confidence 44433 355554443222 34777889999999765
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.7e-21 Score=161.49 Aligned_cols=204 Identities=17% Similarity=0.246 Sum_probs=174.2
Q ss_pred CCCCCCcccccceeecceEEeeEecC----cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC
Q 016224 95 GNSKNSNINNRAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK 170 (393)
Q Consensus 95 ~~~~~~~~~~~~~~~~~i~c~~~~~~----~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~ 170 (393)
.......+.....|.+.|+|+.|.+. .+++|+.||.|.+|++..- +++..+++|.+.|+.|+.+|.+++-++.+.
T Consensus 69 Dm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 69 DMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred eccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcC
Confidence 34444455667788999999999754 5789999999999999886 999999999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEecCC--ceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeC
Q 016224 171 DETVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQ 247 (393)
Q Consensus 171 dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~ 247 (393)
|+.+++||+-+|+.-....... ....+.+.|..++++..+.|-+|.+.+...+........+.++.|... .|++|..
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD 227 (362)
T ss_pred CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC
Confidence 9999999999998777666553 445566899999999999999999999887755555577888888655 9999999
Q ss_pred CCcEEEEEeccCCccccCceeecCceeeEEEEEEc----CCEEEEecCCCcEEEeeCCCc
Q 016224 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVWNLETL 303 (393)
Q Consensus 248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~iwd~~~~ 303 (393)
|+.|.+||.... .+...+.+|...|..+.+- +.+|++++.||.|+|||++..
T Consensus 228 ~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 228 NEWISLKDTDSD----TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEeccCCC----ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999998875 7788899999999999853 358999999999999999865
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-20 Score=155.17 Aligned_cols=227 Identities=20% Similarity=0.259 Sum_probs=182.0
Q ss_pred EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce-EEEE--eCCCEEEEE-cCCeEEEEECCCC
Q 016224 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMI--SEGPWIFIG-VTNFVKAWNTQTN 220 (393)
Q Consensus 145 ~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~-~~~~i~v~d~~~~ 220 (393)
.+++|+.+|+.|.++.+|.+|+|++.|.+..||-..+|+.+.++..+... -++. .+.+.+++| .|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999877544 3333 356667765 8899999999999
Q ss_pred ceeeecCCCCcEEEEEEeCC--EEEEEeC-----CCcEEEEEeccCCc---cccCceeecCceeeEEEEEEc--CCEEEE
Q 016224 221 TDLSLSGPVGQVYAMAVGND--LLFAGTQ-----DGAILAWKFNVTTN---CFEPAASLKGHSLAVVSLVVG--ANKLYS 288 (393)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~--~l~~~~~-----dg~I~vwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~--~~~l~s 288 (393)
+.+.......+|..+.|+.+ +++..+. .+.|.++|++.... ..++...+..+...++..-|+ ++.|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 99988888899999999887 4444332 35699999985431 125566677777888888886 679999
Q ss_pred ecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeee
Q 016224 289 GSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365 (393)
Q Consensus 289 g~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 365 (393)
|..||.|.+||++++ +.+..-+.|...|+.+.++ ..++++++.|.+-++||..+...+..+. .+.++.+.+++|
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---te~PvN~aaisP 241 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---TERPVNTAAISP 241 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---ecccccceeccc
Confidence 999999999999997 5567778899999999998 5699999999999999998765544433 345688888888
Q ss_pred CCCCCcEEEEEe
Q 016224 366 DSEGKPVLLCSC 377 (393)
Q Consensus 366 ~~~~~~~l~s~s 377 (393)
..+ .++.|+
T Consensus 242 ~~d---~VilgG 250 (327)
T KOG0643|consen 242 LLD---HVILGG 250 (327)
T ss_pred ccc---eEEecC
Confidence 655 455443
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=173.43 Aligned_cols=234 Identities=18% Similarity=0.245 Sum_probs=183.2
Q ss_pred ceeecceEEeeEecCc-EEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC--
Q 016224 106 AVIKTDILCRNWVQGN-CMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-- 181 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~~-~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-- 181 (393)
....+++.|++-++.+ .++++ ..|.|++|.+.+| .++..+.+|=..|+++.|+-|+.+|+|||.||.|.+|.+..
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 3345679999988775 44555 9999999999999 89999999999999999999999999999999999998632
Q ss_pred -------CeEEEEEecCC-ceEEEE-----eCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe
Q 016224 182 -------GQCAGVINLGG-EVGCMI-----SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT 246 (393)
Q Consensus 182 -------~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~ 246 (393)
-+....+..+. ++..+. .+.+++.++.|.++++||+..+..+........+.+++.+|- .+++|+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 23344444332 233332 245566678999999999999999877778889999999987 999999
Q ss_pred CCCcEEEEEeccCCc------------cccCceeecCcee--eEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224 247 QDGAILAWKFNVTTN------------CFEPAASLKGHSL--AVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 247 ~dg~I~vwd~~~~~~------------~~~~~~~~~~~~~--~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 310 (393)
.+|.|.+.++..... .......+.+|.. .|+|++. ++..|++|+.||.|.|||+.+.++++++.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 999999988765431 1123455678877 8888876 58899999999999999999999999998
Q ss_pred cCccceEEEEEc---CCEEEEEeCCCcEEEEEc
Q 016224 311 EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 311 ~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~ 340 (393)
...++|+.+.+. ...++.-.....+-.|++
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred hhccccceeEeeccccceecccccCccCCchHh
Confidence 888899988884 344443444445555554
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.9e-21 Score=177.87 Aligned_cols=227 Identities=23% Similarity=0.330 Sum_probs=188.5
Q ss_pred ecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecC-CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224 109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (393)
Q Consensus 109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (393)
...|+++.|+++ .+.+|..+|.|.|||..+. +.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 679999999966 4567999999999999987 77888888 99999999998 668999999999999999987655
Q ss_pred EE-EecCCceEE---EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEE--eCCCcEEEE
Q 016224 186 GV-INLGGEVGC---MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAG--TQDGAILAW 254 (393)
Q Consensus 186 ~~-~~~~~~~~~---~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~--~~dg~I~vw 254 (393)
.. +..+..-.| +..++.++++| .|+.+.|||....... .+..|...|.+++|+|- +||+| +.|+.|++|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 54 554444333 34688899986 8999999999665544 89999999999999986 88886 479999999
Q ss_pred EeccCCccccCceeecCceeeEEEEEEcCCE--EEE--ecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEE
Q 016224 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYS--GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS 328 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s 328 (393)
|..++ ..+.... ....|+.|.|+..+ |++ |..++.|.||+..+.+.+..+.+|...|..++++ +..+++
T Consensus 374 n~~~g----~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 374 NTNTG----ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EcCCC----cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 99987 3333333 46789999998543 444 4567899999999999999999999999999998 679999
Q ss_pred EeCCCcEEEEEcCCC
Q 016224 329 CSLDKTIKVWFATDS 343 (393)
Q Consensus 329 ~s~dg~i~iwd~~~~ 343 (393)
|+.|.++++|++-..
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999998654
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9e-21 Score=160.30 Aligned_cols=268 Identities=13% Similarity=0.169 Sum_probs=191.5
Q ss_pred eEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224 112 ILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (393)
Q Consensus 112 i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (393)
..|++|+.- .+.+|..+|.|.|||+.+- ..-+.+.+|..+|++++||++|+.|+|+|.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 689999965 4557999999999999986 7888999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEE--e--CCCEEEEEcCCeEEEEECCCCceeee--cCCC--C-cEEEEEEeC--CEEEEEeCCCcEEEEEecc
Q 016224 190 LGGEVGCMI--S--EGPWIFIGVTNFVKAWNTQTNTDLSL--SGPV--G-QVYAMAVGN--DLLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 190 ~~~~~~~~~--~--~~~~l~~~~~~~i~v~d~~~~~~~~~--~~~~--~-~v~~l~~~~--~~l~~~~~dg~I~vwd~~~ 258 (393)
...++-... + .+..+++-.+..-.+.++...+...+ .... . .-.+..|++ +++++|+..|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 888764432 2 34445554554444444443322211 1111 1 111223443 4999999999999999887
Q ss_pred CCccccCceeecCce-eeEEEEEE--cCCEEEEecCCCcEEEeeCCCc-------c--eeeEecc--CccceEEEEEc--
Q 016224 259 TTNCFEPAASLKGHS-LAVVSLVV--GANKLYSGSMDNSIRVWNLETL-------Q--CIQTLTE--HTSVVMSLLCW-- 322 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~-------~--~~~~~~~--~~~~v~~l~~~-- 322 (393)
. +.+..++-.. ..|..+.+ .+..|+..+.|..||.|+++.- + +.+.++. ....-.+++|+
T Consensus 185 ~----e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 185 L----ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred h----eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 6 5555554433 55655555 5889999999999999998631 1 1122221 12233566676
Q ss_pred CCEEEEEeC-CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 323 DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 323 ~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
|.|++.++. ...++||....+..+..+.+...+ ....+.|.|..+ .|++- ..|.|++|....
T Consensus 261 geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~whp~rp---~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVNWHPVRP---IIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccEEEeccccceeEEEEecCCcceeeeecCCchh-heeeccccccee---eeeec-cCCceEEEEeec
Confidence 667776664 456999999888877777765533 477899999877 66666 789999998643
No 118
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.8e-20 Score=156.86 Aligned_cols=252 Identities=13% Similarity=0.173 Sum_probs=183.1
Q ss_pred ccceeecceEEeeEe--cCcEEEecCCCeEEEEECCCC---cEEEEEecCCcCCEEEEEe-cC-CCCEEEEEeCCCcEEE
Q 016224 104 NRAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITL-PS-GSDKLYSGSKDETVRV 176 (393)
Q Consensus 104 ~~~~~~~~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~---~~~~~~l~~h~~~I~~i~~-s~-~~~~l~s~s~dg~v~i 176 (393)
+.+.|+.-|.|+.|. ....++++.|.+|+|||..+. +.+....+.|.+.|..|.| +| -|+.+|+++.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 345677788898875 456778999999999996532 6778888999999999999 34 5899999999999999
Q ss_pred EECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEE
Q 016224 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAIL 252 (393)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~ 252 (393)
|.-...+ +..++ +-|. +...+......|+++.|.|. .|++++.||.|+
T Consensus 88 WEE~~~~----~~~~~--------------------~~Wv----~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 88 WEEQEKS----EEAHG--------------------RRWV----RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred eeecccc----ccccc--------------------ceeE----EEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence 9854211 11000 0010 11255677889999999997 899999999999
Q ss_pred EEEeccCCcc--ccCceeec-------CceeeEEEEEEcC-----CEEEEecCC-----CcEEEeeCCC----cceeeEe
Q 016224 253 AWKFNVTTNC--FEPAASLK-------GHSLAVVSLVVGA-----NKLYSGSMD-----NSIRVWNLET----LQCIQTL 309 (393)
Q Consensus 253 vwd~~~~~~~--~~~~~~~~-------~~~~~v~~l~~~~-----~~l~sg~~d-----g~i~iwd~~~----~~~~~~~ 309 (393)
||+.-..... +.+..++. .+..+..|++|++ .+|+.|+.+ +.++||.... ...+.++
T Consensus 140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 9987543221 22233332 4666778898874 357777765 4788887643 3456778
Q ss_pred ccCccceEEEEEcC------CEEEEEeCCCcEEEEEcCCCc-----------------ceEEEEe-ecCCccEEEEEeee
Q 016224 310 TEHTSVVMSLLCWD------QFLLSCSLDKTIKVWFATDSG-----------------NLEVTYT-HNEEHGVLALCGMP 365 (393)
Q Consensus 310 ~~~~~~v~~l~~~~------~~l~s~s~dg~i~iwd~~~~~-----------------~~~~~~~-~~~~~~v~~~~~~~ 365 (393)
.+|..+|++|+|.+ .+|++++.|| |+||.++... .++.+.. ..+...|..+.|.-
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 89999999999984 3799999999 9999987311 1222221 22334699999987
Q ss_pred CCCCCcEEEEEeCCCeEEEEeC
Q 016224 366 DSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 366 ~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
.+. +|++.+.||.||+|..
T Consensus 299 tGt---iLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 299 TGT---ILSSTGDDGCVRLWKA 317 (361)
T ss_pred eee---EEeecCCCceeeehhh
Confidence 766 9999999999999975
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.3e-22 Score=186.75 Aligned_cols=227 Identities=18% Similarity=0.261 Sum_probs=177.2
Q ss_pred cCcEEEecCCCeEEEEECCC--CcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE
Q 016224 119 QGNCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195 (393)
Q Consensus 119 ~~~~~~g~~dg~i~vwd~~~--~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 195 (393)
.+.+++++..|.|.+||+.. ..+++..|..|+..|+++.|++ ...+|+|||.||+|++||++..+...++
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~------- 172 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF------- 172 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-------
Confidence 44567899999999999986 2377788999999999999987 5578999999999999999887765444
Q ss_pred EEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH 272 (393)
Q Consensus 196 ~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~ 272 (393)
.+....|..+.|+|. .|+++.+.|.+++||++... .....+..|
T Consensus 173 ------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH 219 (839)
T KOG0269|consen 173 ------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEKKLTAH 219 (839)
T ss_pred ------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHHHhhcc
Confidence 345667889999875 99999999999999999875 566778899
Q ss_pred eeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcC---CEEEEEeC--CCcEEEEEcCCCc
Q 016224 273 SLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWD---QFLLSCSL--DKTIKVWFATDSG 344 (393)
Q Consensus 273 ~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~---~~l~s~s~--dg~i~iwd~~~~~ 344 (393)
.++|.++.|+++ +||||+.|+.|+|||..+.+.-..... ...++..+.|-+ ..|++++. |-.|+|||++..-
T Consensus 220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 999999999865 799999999999999987554333332 345789999984 46888775 7789999998665
Q ss_pred ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
....... .+...+..++|-.. +...|.+++.||+|..-.++
T Consensus 300 IP~~t~~-eH~~~vt~i~W~~~--d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 300 IPYATFL-EHTDSVTGIAWDSG--DRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccceeee-ccCccccceeccCC--CceeeEeecCccHHHHhhhh
Confidence 4433332 22234677777542 33479999999988654443
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=1.5e-21 Score=172.41 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=169.4
Q ss_pred CCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeec
Q 016224 148 GHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (393)
Q Consensus 148 ~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~ 226 (393)
.|.+.|..+...|.. .++|+.+..+.|.|||+.+......... .-...+.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------------------~~~Pdl~L~ 174 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------------------ECRPDLRLK 174 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------------------cCCCceEEE
Confidence 499999999998854 6677788899999999876433221100 011123567
Q ss_pred CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc---ccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEE
Q 016224 227 GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRV 297 (393)
Q Consensus 227 ~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~i 297 (393)
+|...-++++|++. .|++++.|++|.+||+...... ..+...+.+|...|..++|. .+.|++.+.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 78777888999886 9999999999999999876542 45667788999999999986 458999999999999
Q ss_pred eeCC--CcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCc
Q 016224 298 WNLE--TLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKP 371 (393)
Q Consensus 298 wd~~--~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 371 (393)
||+| +.++.....+|...|.+++|. +..||+||.|++|.+||+++... +..+..|... |..+.|+|... .
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de--v~~V~WSPh~e--t 330 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE--VFQVEWSPHNE--T 330 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc--eEEEEeCCCCC--c
Confidence 9999 567778888999999999998 56899999999999999998765 4445555554 99999999854 4
Q ss_pred EEEEEeCCCeEEEEeCCc
Q 016224 372 VLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 372 ~l~s~s~dg~I~iwd~~s 389 (393)
+|++++.|+.+.+||+..
T Consensus 331 vLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eeEecccCCcEEEEeccc
Confidence 999999999999999864
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.9e-21 Score=168.44 Aligned_cols=273 Identities=13% Similarity=0.159 Sum_probs=211.8
Q ss_pred ecceEEeeEecCc--EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeE
Q 016224 109 KTDILCRNWVQGN--CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 109 ~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~ 184 (393)
...|+|+.|.+.. +++++.|+.++||.++.. ...++.+.--..+|.+..|.|+|. .+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4599999999884 557999999999998732 256677777789999999999998 999999999999999998876
Q ss_pred EEEEecCCc----e--EEEEeCCCEEEE-EcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224 185 AGVINLGGE----V--GCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (393)
Q Consensus 185 ~~~~~~~~~----~--~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd 255 (393)
...-...+. + -.+.+++.+|+. |..|.|.+....+++.+......+.|..++|+.+ .|++.+.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 554332211 1 223467777765 6889999999999999877777889999999887 888888999999999
Q ss_pred eccCCccccCceeecCc---eeeEEEEEEcCCEEEEecCCCcEEEeeCCC------cceeeEeccCccceEEEEEc--CC
Q 016224 256 FNVTTNCFEPAASLKGH---SLAVVSLVVGANKLYSGSMDNSIRVWNLET------LQCIQTLTEHTSVVMSLLCW--DQ 324 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~~--~~ 324 (393)
++.. ..+..+... .+.-.|++.++.+||+|+..|.|.|||..+ .+++.++..-...|+++.|+ .+
T Consensus 373 l~~~----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 373 LRQN----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred cCCc----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 9987 444444321 122345557788999999999999999753 56788888888899999998 45
Q ss_pred EEEEEeC--CCcEEEEEcCCCcceEEEEeec-CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 325 FLLSCSL--DKTIKVWFATDSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 325 ~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.|+.+|. +..+++-.+.+......+.... .-..+++++|+|.+. +|+.|..+|.|.+|.+.
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG---~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG---YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc---eEEeecCCCceeeEeec
Confidence 6666654 6789998886544333333222 224589999999876 99999999999999875
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-19 Score=147.27 Aligned_cols=240 Identities=20% Similarity=0.299 Sum_probs=186.3
Q ss_pred cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----------------EEEEEecCCce--EEEEeCC
Q 016224 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----------------CAGVINLGGEV--GCMISEG 201 (393)
Q Consensus 140 ~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----------------~~~~~~~~~~~--~~~~~~~ 201 (393)
++.+..+. .+..|.+++|+|.|.+.+.|+...+++|-.+..-. +.+.-.+.+.+ .++.+.+
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 34455554 66789999999999999999999999987543210 11111223333 3455799
Q ss_pred CEEEEE-cCCeEEEEECCC------CceeeecCCCCcEEEEEEeCC------EEEEEe-CCCcEEEEEeccCCccccCce
Q 016224 202 PWIFIG-VTNFVKAWNTQT------NTDLSLSGPVGQVYAMAVGND------LLFAGT-QDGAILAWKFNVTTNCFEPAA 267 (393)
Q Consensus 202 ~~l~~~-~~~~i~v~d~~~------~~~~~~~~~~~~v~~l~~~~~------~l~~~~-~dg~I~vwd~~~~~~~~~~~~ 267 (393)
+++++| .|.+|++..... +..+.+.-|.+.|..++|-.+ +|++++ .|..|++-|...+ ...+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g----~~~~ 177 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG----QGFH 177 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC----Ccce
Confidence 999998 677888866543 334578889999999999544 555543 5667777777766 6678
Q ss_pred eecCceeeEEEE-EEcCCEEEEecCCCcEEEeeCCCcceeeEecc--C-----ccceEEEEEc--CCEEEEEeCCCcEEE
Q 016224 268 SLKGHSLAVVSL-VVGANKLYSGSMDNSIRVWNLETLQCIQTLTE--H-----TSVVMSLLCW--DQFLLSCSLDKTIKV 337 (393)
Q Consensus 268 ~~~~~~~~v~~l-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~l~~~--~~~l~s~s~dg~i~i 337 (393)
.+.+|.+.|.++ +|++-++++|+.|.+|++||++-..++.++.. | ...|.+++.+ |++|++|-.|..-.+
T Consensus 178 a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 178 ALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred eecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 889999999887 58899999999999999999999888888752 2 3467777776 789999999999999
Q ss_pred EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
||++.+..++.+..|..+ +.++.|+|... |+++++.|..|++=|+..
T Consensus 258 ydirg~r~iq~f~phsad--ir~vrfsp~a~---yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHSAD--IRCVRFSPGAH---YLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EEeeCCceeeeeCCCccc--eeEEEeCCCce---EEEEecccceEEEeeccc
Confidence 999988888888777766 88899988665 999999999999999863
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-19 Score=168.77 Aligned_cols=270 Identities=18% Similarity=0.285 Sum_probs=195.8
Q ss_pred eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCe
Q 016224 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~ 183 (393)
.+...|+++.-+|- -++.|..+|+|.++++..+ +.+.+++...+.|++++|.-||+ .|++|+..|.+.+||++..+
T Consensus 200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred ccccceeEeccCCcceEEEEeccCceEEEEEcccC-cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 34468899988875 4557999999999999998 89999995569999999998886 55667777999999999877
Q ss_pred EEEEEec-C-Cce--EEEEeCCCEEEE-EcCCeEEEE-------------------------------------------
Q 016224 184 CAGVINL-G-GEV--GCMISEGPWIFI-GVTNFVKAW------------------------------------------- 215 (393)
Q Consensus 184 ~~~~~~~-~-~~~--~~~~~~~~~l~~-~~~~~i~v~------------------------------------------- 215 (393)
.+..+.. + +.+ ..+.+...++++ +.|+.+++|
T Consensus 279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 6655541 1 111 111222222222 234433333
Q ss_pred ---------------------------------------------------------------------ECCCCce--e-
Q 016224 216 ---------------------------------------------------------------------NTQTNTD--L- 223 (393)
Q Consensus 216 ---------------------------------------------------------------------d~~~~~~--~- 223 (393)
+.+.... .
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 2222111 0
Q ss_pred ----eecCCCCcEEEEEEe--CCEEEEEeCCCcEEEEEeccCCccccCceee---cCceeeEEEEEEcC--CEEEEecCC
Q 016224 224 ----SLSGPVGQVYAMAVG--NDLLFAGTQDGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVGA--NKLYSGSMD 292 (393)
Q Consensus 224 ----~~~~~~~~v~~l~~~--~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~---~~~~~~v~~l~~~~--~~l~sg~~d 292 (393)
.+......+++++.+ .++.+.|...|.|-+|+++++- ....+ ..|..+|+.++.++ ..+++++.+
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD 514 (910)
T ss_pred ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe----eecccccCccccCceeEEEecCCCceEEEccCc
Confidence 111122445555554 4588889999999999998873 23334 57999999999985 469999999
Q ss_pred CcEEEeeCCCcce-----------------------------------------eeEeccCccceEEEEEc--CCEEEEE
Q 016224 293 NSIRVWNLETLQC-----------------------------------------IQTLTEHTSVVMSLLCW--DQFLLSC 329 (393)
Q Consensus 293 g~i~iwd~~~~~~-----------------------------------------~~~~~~~~~~v~~l~~~--~~~l~s~ 329 (393)
|.+++||.....+ ++.|.+|...|++++|+ |++|+++
T Consensus 515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 9999999875432 23356899999999999 7899999
Q ss_pred eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC-CeEEEEeC
Q 016224 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-NSVRFYDL 387 (393)
Q Consensus 330 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d-g~I~iwd~ 387 (393)
+.|++|++||+.++..+..+.. +..++.+.|+|.++ +|+|...| .-|++|-=
T Consensus 595 smD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD---~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGD---FLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCC---EEEEEEecCceEEEEEc
Confidence 9999999999999877666554 34588999999887 99999998 66999963
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.7e-20 Score=175.62 Aligned_cols=236 Identities=18% Similarity=0.209 Sum_probs=193.9
Q ss_pred cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe-cCCceEEEEeCCCE-EEEEcCCeEEEEECCCCcee
Q 016224 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCMISEGPW-IFIGVTNFVKAWNTQTNTDL 223 (393)
Q Consensus 147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~-l~~~~~~~i~v~d~~~~~~~ 223 (393)
..|+..-+.|+|.++|++|++++.||.|++|+.... +.-..+. ....+.++...... ++++.+++|.+|.+..++..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 468999999999999999999999999999998765 4444444 45555666554444 44558889999999998876
Q ss_pred -eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEe
Q 016224 224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (393)
Q Consensus 224 -~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iw 298 (393)
.+....-++.+++|+.+ +++.|+.|-.|++.++... .....+.+|..+|.++.++ +++||+.+.||.|++|
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc----chheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 55666778899999887 9999999999999999887 4567889999999999998 4589999999999999
Q ss_pred eCCCcceeeEeccC--------ccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 299 NLETLQCIQTLTEH--------TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 299 d~~~~~~~~~~~~~--------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
|+.++.+..++.+- ...+..++|+ +..++....|+.|++|+....+....+........+..+.|+|.+.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 99999888777531 3455778888 4578888899999999998887777776655555588889988765
Q ss_pred CCcEEEEEeCCCeEEEEeCCc
Q 016224 369 GKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~s 389 (393)
|||+++.||.|.|||+++
T Consensus 246 ---YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 ---YIAASTLDGQILVWNVDT 263 (933)
T ss_pred ---EEeeeccCCcEEEEeccc
Confidence 999999999999999984
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.1e-20 Score=155.72 Aligned_cols=237 Identities=23% Similarity=0.346 Sum_probs=171.5
Q ss_pred cCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCe------------EEEEEecCC----ceE--EEEe-C-CCEEE
Q 016224 147 EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQ------------CAGVINLGG----EVG--CMIS-E-GPWIF 205 (393)
Q Consensus 147 ~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~------------~~~~~~~~~----~~~--~~~~-~-~~~l~ 205 (393)
..|.+.|.++...+ .++++++|+.||.|.+||++... ++-..+++. .+. .+.+ + |-+..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999977 78999999999999999997543 110111111 111 1223 3 44444
Q ss_pred EEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEE
Q 016224 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280 (393)
Q Consensus 206 ~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 280 (393)
.+.|.++++||..+-+.......++.|++-+++|- ++++|..+-.|++.|+..+ ...+.+.+|...|.++.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEEEE
Confidence 45999999999999888877777788888888773 8999999999999999998 66789999999999999
Q ss_pred EcCC---EEEEecCCCcEEEeeCCCc-ceeeEe--------------ccCccceEEEEEc--CCEEEEEeCCCcEEEEEc
Q 016224 281 VGAN---KLYSGSMDNSIRVWNLETL-QCIQTL--------------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 281 ~~~~---~l~sg~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~ 340 (393)
|++. .|++|+.||.|++||++.- -+...+ ..|.+.+..++|. +.++++++.|..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9865 5999999999999999853 233333 3567788999998 789999999999999999
Q ss_pred CCCcceEEEEee---cC---------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 341 TDSGNLEVTYTH---NE---------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 341 ~~~~~~~~~~~~---~~---------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.+++....-.+. +. ....-.+.+.|.. +.-.|++..+-..|+.|+..
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred ccCcccccccccccccccccceEEEeecccceEEEEecC-CeEEEEEccCceEEEeeecc
Confidence 876543222211 00 0001123344444 44466666666677777765
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.3e-20 Score=171.13 Aligned_cols=265 Identities=19% Similarity=0.302 Sum_probs=183.7
Q ss_pred EEEecCCCeEEEEECCCC-----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE--Ee-cCCc
Q 016224 122 CMYGEKCKFLHSWTVGDG-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV--IN-LGGE 193 (393)
Q Consensus 122 ~~~g~~dg~i~vwd~~~~-----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~-~~~~ 193 (393)
++.+..||.|.++|...- .+.+.....|...|..+.|-|....|++++.|.++++||+.+.+++.. +. +...
T Consensus 67 LavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S 146 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS 146 (720)
T ss_pred EEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc
Confidence 446889999999998743 123466778999999999999778999999999999999999888766 32 2233
Q ss_pred e--EEEEeCCCEEE-E-EcCCeEEEEECCCCcee----------------------------eecCCC----CcEEEEEE
Q 016224 194 V--GCMISEGPWIF-I-GVTNFVKAWNTQTNTDL----------------------------SLSGPV----GQVYAMAV 237 (393)
Q Consensus 194 ~--~~~~~~~~~l~-~-~~~~~i~v~d~~~~~~~----------------------------~~~~~~----~~v~~l~~ 237 (393)
+ .++.+.+..++ + |.|+.|.|||++....- ....+. +.|+.+.|
T Consensus 147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 3 33444444433 4 48999999998755410 001122 23555666
Q ss_pred eCC-EEEEEeC-CCcEEEEEeccCCccccC--c--eeecCc---eeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc--c
Q 016224 238 GND-LLFAGTQ-DGAILAWKFNVTTNCFEP--A--ASLKGH---SLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL--Q 304 (393)
Q Consensus 238 ~~~-~l~~~~~-dg~I~vwd~~~~~~~~~~--~--~~~~~~---~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~--~ 304 (393)
-.+ .||+++. |+.|+|||++.....++. . ..+..| ...+.++..+ |.+|++.+.|+.|++|++.+. .
T Consensus 227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 544 8888887 999999999986543221 1 122223 3455666665 688888888999999999863 3
Q ss_pred eeeEeccCccc---e-EEEEEcCCEEEEEeCCCcEEEEEcCCCcce-EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224 305 CIQTLTEHTSV---V-MSLLCWDQFLLSCSLDKTIKVWFATDSGNL-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (393)
Q Consensus 305 ~~~~~~~~~~~---v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d 379 (393)
++..+.++... + ..+.+++.++++|+.|...++|.+.+.+.. ..+.+|.. .|+.++|.|.... -++++++|
T Consensus 307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~--eVt~V~w~pS~~t--~v~TcSdD 382 (720)
T KOG0321|consen 307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR--EVTTVRWLPSATT--PVATCSDD 382 (720)
T ss_pred chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce--EEEEEeeccccCC--CceeeccC
Confidence 34444444322 1 345566899999999999999999876543 33444544 4888888876543 26777999
Q ss_pred CeEEEEeCCce
Q 016224 380 NSVRFYDLPSV 390 (393)
Q Consensus 380 g~I~iwd~~s~ 390 (393)
..+++|++..+
T Consensus 383 ~~~kiW~l~~~ 393 (720)
T KOG0321|consen 383 FRVKIWRLSNG 393 (720)
T ss_pred cceEEEeccCc
Confidence 99999999654
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=3.8e-20 Score=163.62 Aligned_cols=280 Identities=15% Similarity=0.161 Sum_probs=199.7
Q ss_pred cceeecceEEeeEecCc----EEEecCCCeEEEEECC---CCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEE
Q 016224 105 RAVIKTDILCRNWVQGN----CMYGEKCKFLHSWTVG---DGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRV 176 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~----~~~g~~dg~i~vwd~~---~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~i 176 (393)
...+...|+|++|.|.. +++|+..|.|-+||+. ....-+..+..|..+|.+|.|+| +-..+++.|.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 44567799999999752 4469999999999994 22345677889999999999999 4578999999999999
Q ss_pred EECCCCeEEEEEecCCceEEEE------eCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEE
Q 016224 177 WDCASGQCAGVINLGGEVGCMI------SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAG 245 (393)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~ 245 (393)
-|++.......+.....-..+. .+...++...-|...+||.+++..- .+.-|...|..++++|- +|+++
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 9998876554444432221111 2445566666679999999987653 66778889999999986 99999
Q ss_pred eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCC----CcceeeEeccCcc----c
Q 016224 246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE----TLQCIQTLTEHTS----V 315 (393)
Q Consensus 246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~----~~~~~~~~~~~~~----~ 315 (393)
+.|++.+|||++.-.....+......|...|.+..|+ +..|++.+.|..|+|||.. ...+..++. |.. .
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~Rw 420 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRW 420 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccccc
Confidence 9999999999998765444455666799999988886 3469999999999999983 333444443 221 1
Q ss_pred e--EEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEE-EEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 316 V--MSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA-LCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 316 v--~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
+ ....|. ..++++|-.-..|-|+|-..++.+..+...... .|.+ ..|+|-.. .+++.++..|.|+||--+
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~--~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRD--TLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccc--ceeccCCccceEEEEecC
Confidence 1 233455 458889988899999998665544444433221 2333 45666543 144455567889988644
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=2e-20 Score=167.08 Aligned_cols=266 Identities=16% Similarity=0.264 Sum_probs=205.3
Q ss_pred cceEEeeE-e-cCcEEEecCCCeEEEEECCCC--cEEEEEecC--CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 110 TDILCRNW-V-QGNCMYGEKCKFLHSWTVGDG--FKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 110 ~~i~c~~~-~-~~~~~~g~~dg~i~vwd~~~~--~~~~~~l~~--h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
++|.|..- + +...|+.+..|.|+|||+... ..++..|.. ....|.++.+.|||+.|++|+.-.+|.|||+....
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC
Confidence 46666654 3 346667777889999999742 234444443 45789999999999999999999999999998765
Q ss_pred EEEEEecCC--c---eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224 184 CAGVINLGG--E---VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (393)
Q Consensus 184 ~~~~~~~~~--~---~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw 254 (393)
..-..+... . ...+.++.++.++. .||.|.|||+.....+ .+.+|.+.+.||.++++ .|.+|+-|.+|+.|
T Consensus 499 prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 499 PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW 578 (705)
T ss_pred cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence 433333222 1 12344678877765 9999999999999888 89999999999999987 99999999999999
Q ss_pred EeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe
Q 016224 255 KFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS 330 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s 330 (393)
|++.+.. ... ......|.++... +++|+.|-..+.+.|.... +.....+..|...|.++.|. |+++++.+
T Consensus 579 Dlregrq----lqq-hdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 579 DLREGRQ----LQQ-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred hhhhhhh----hhh-hhhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence 9998742 111 1234567777654 6799999999999988865 44456677899999999998 99999999
Q ss_pred CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
.|.-+..|...-+..+. ...+...|++...+.+.. +|+||+.|..-.||.+
T Consensus 653 kDnlLnawrtPyGasiF---qskE~SsVlsCDIS~ddk---yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIF---QSKESSSVLSCDISFDDK---YIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCcccccee---eccccCcceeeeeccCce---EEEecCCCcceEEEEE
Confidence 99999999887665443 334455688888776655 9999999999888876
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.6e-21 Score=167.66 Aligned_cols=237 Identities=16% Similarity=0.229 Sum_probs=184.2
Q ss_pred EEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE-eCCCEEEEEcCCeEEEEEC
Q 016224 141 KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI-SEGPWIFIGVTNFVKAWNT 217 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~i~v~d~ 217 (393)
..+..|.+|.+.|.+++=+|.. ..++||+.||.|+|||+.+..+..++..+. .+..+. ..+.++.+|.|.+|+.|-+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 4567789999999999999977 789999999999999999999999998876 444443 3577888899999999998
Q ss_pred CCCceeeecCCCCcEEEEEEeC--CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCC
Q 016224 218 QTNTDLSLSGPVGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMD 292 (393)
Q Consensus 218 ~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~d 292 (393)
......++ .....+..+.-+. +.++++++ .|.|||.+.. .++..+.--...|.++.+++ ..|+++.+|
T Consensus 137 ~~~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~----~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 137 DGPPLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD----NPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred cCCcceee-eccccccccccccccccccccCc--eeeecccccC----CccceeecCCCceeEEecCCCcchheeeeccC
Confidence 77422222 2234444554433 37777765 4899999876 56677776677889999985 368999999
Q ss_pred CcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcce-EEEEeecCCccEEEEEeeeCCCC
Q 016224 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNL-EVTYTHNEEHGVLALCGMPDSEG 369 (393)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 369 (393)
+.|.|||+++.++++.+. -.-..+.|+|++ ..++++++|..++.||++..... .....|. ..|+++.|+|.+.
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv--sAV~dVdfsptG~- 285 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV--SAVMDVDFSPTGQ- 285 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccc--eeEEEeccCCCcc-
Confidence 999999999999887764 233457788885 36889999999999999876543 3333343 3499999999877
Q ss_pred CcEEEEEeCCCeEEEEeCCce
Q 016224 370 KPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 370 ~~~l~s~s~dg~I~iwd~~s~ 390 (393)
-|++||.|.+|+||.+..+
T Consensus 286 --EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 286 --EFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred --hhccccccceEEEeecCCC
Confidence 7999999999999998765
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-21 Score=181.22 Aligned_cols=227 Identities=20% Similarity=0.356 Sum_probs=186.7
Q ss_pred ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
..|...+-|+..... .++.|+.|-.+-+|.+... -.+..|.+|..+|.+|.|+++..+|++|+.+|+|++||+++.+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 345566777765332 4557999999999998876 5566799999999999999999999999999999999999877
Q ss_pred EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCc
Q 016224 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~ 261 (393)
.+++ +.+|...+..+.|+|- +++.|+.|..+.+||++..
T Consensus 104 ~vrt-------------------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-- 144 (825)
T KOG0267|consen 104 IVRT-------------------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-- 144 (825)
T ss_pred hhhh-------------------------------------hhccccCcceeeeccceEEeccccccccceehhhhcc--
Confidence 6543 4688889999999998 7888999999999999976
Q ss_pred cccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEE
Q 016224 262 CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKV 337 (393)
Q Consensus 262 ~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~i 337 (393)
-+...+.+|...+..+.+. |.+++.++.|.+++|||+..|+.+.+|..|.+.+.++.+++ -++++|+.|++|++
T Consensus 145 --Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 145 --GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred --CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeee
Confidence 5567778888877776664 67999999999999999999999999999999999999884 47889999999999
Q ss_pred EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (393)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d 379 (393)
||+++.+.+...... ...+.+..|.++.. .+++|..+
T Consensus 223 ~dletfe~I~s~~~~--~~~v~~~~fn~~~~---~~~~G~q~ 259 (825)
T KOG0267|consen 223 WDLETFEVISSGKPE--TDGVRSLAFNPDGK---IVLSGEQI 259 (825)
T ss_pred eccceeEEeeccCCc--cCCceeeeecCCce---eeecCchh
Confidence 999765544433332 45688999988766 67776554
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9.2e-21 Score=154.91 Aligned_cols=205 Identities=20% Similarity=0.225 Sum_probs=163.1
Q ss_pred ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeee
Q 016224 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225 (393)
Q Consensus 146 l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~ 225 (393)
-..|++.|.++...--|++|||++.|++|+|+.++...... ....+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~----------------------------------ll~~L 52 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK----------------------------------LLAEL 52 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce----------------------------------eeeEe
Confidence 35799999999998899999999999999999987654311 11267
Q ss_pred cCCCCcEEEEEEe-CC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC----EEEEecCCCcEEE
Q 016224 226 SGPVGQVYAMAVG-ND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN----KLYSGSMDNSIRV 297 (393)
Q Consensus 226 ~~~~~~v~~l~~~-~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~l~sg~~dg~i~i 297 (393)
.+|.++|..+.|. |. +|++++.||.|.||.-..+ .+........|...|.+++|-++ .|++++.||.|.|
T Consensus 53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 8999999999994 44 9999999999999987766 35667778889999999998643 6999999999999
Q ss_pred eeCCCc---ceeeEeccCccceEEEEEcC----------------CEEEEEeCCCcEEEEEcCCCcceE--EEEeecCCc
Q 016224 298 WNLETL---QCIQTLTEHTSVVMSLLCWD----------------QFLLSCSLDKTIKVWFATDSGNLE--VTYTHNEEH 356 (393)
Q Consensus 298 wd~~~~---~~~~~~~~~~~~v~~l~~~~----------------~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~ 356 (393)
.+.++. ........|.-.|++++|.+ +.|++|+.|..|+||+..+..-.. .+..|. .
T Consensus 131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~--d 208 (299)
T KOG1332|consen 131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK--D 208 (299)
T ss_pred EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc--h
Confidence 988753 22334567999999999872 469999999999999987653222 233443 4
Q ss_pred cEEEEEeeeCC-CCCcEEEEEeCCCeEEEEeCC
Q 016224 357 GVLALCGMPDS-EGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 357 ~v~~~~~~~~~-~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.|..++|.|.- -...+|++++.||+|.||-..
T Consensus 209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred hhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 58899999864 234489999999999999765
No 132
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.6e-20 Score=155.72 Aligned_cols=262 Identities=15% Similarity=0.164 Sum_probs=189.5
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC--CCCEEEEEeCCCcEEEEECCCCeEEEEEecC----Cce
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQCAGVINLG----GEV 194 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~ 194 (393)
.++++-..|.|++||..++ +.+..+++|...+..+.|.. ....+.+|+.||+|++||++.......+... .+.
T Consensus 42 ~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3667889999999999998 89999999999999999966 4578999999999999999987666555433 234
Q ss_pred EEEEe--CCCEEEEE-----cCCeEEEEECCCCce-e--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCc
Q 016224 195 GCMIS--EGPWIFIG-----VTNFVKAWNTQTNTD-L--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN 261 (393)
Q Consensus 195 ~~~~~--~~~~l~~~-----~~~~i~v~d~~~~~~-~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~ 261 (393)
.++.. .+.++++| .+-.|.+||++..+. + -...|.+.|++++|+|. +|++|+.||-|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 45543 56777776 345899999998877 3 45679999999999886 999999999999999987643
Q ss_pred cccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEeccCc-------------cceEEEEEc-CC
Q 016224 262 CFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHT-------------SVVMSLLCW-DQ 324 (393)
Q Consensus 262 ~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~~-~~ 324 (393)
. ..+.....|...|..+.|.++ .|.+-+...+..+|+++.+.+...+.... ..|...... ..
T Consensus 201 e-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 E-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred h-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 3 334444567888999999754 69999999999999999887655553221 011122111 23
Q ss_pred EEEEEeC-CCcEEEEEcCC---C---cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 325 FLLSCSL-DKTIKVWFATD---S---GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 325 ~l~s~s~-dg~i~iwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.++.++. -++..++-+.. + ..+..+.++ +..-|.++.|..... +++||++||.+.+|..+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~---~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKND---VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccc---eeeccCCCceEEEEecC
Confidence 4444444 56666654431 1 122223332 233477777764444 99999999999999953
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=7.5e-20 Score=158.16 Aligned_cols=217 Identities=20% Similarity=0.254 Sum_probs=163.4
Q ss_pred EecCCcCCEEEEEecCCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCce
Q 016224 145 QLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD 222 (393)
Q Consensus 145 ~l~~h~~~I~~i~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~ 222 (393)
..-.|.+.|..+.-++-+ .+.++=+..|.|+||++... +..+... .+.+-+......
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~-------------------~~~~~~s~~~Pl 204 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEP-------------------GLEVKDSEFRPL 204 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCc-------------------cccccccccCce
Confidence 344688888888877644 56666677899999998542 1111100 011112233334
Q ss_pred eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEE
Q 016224 223 LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIR 296 (393)
Q Consensus 223 ~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~ 296 (393)
.++.+|...=+.|+|+|- .|++|.--+.|++|...++.-. .-...+.+|...|-.|.|++ +.|++++.||+|+
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr 283 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR 283 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEeeecCceEE
Confidence 478899999999999995 7899989999999998875422 12345667999999999964 5899999999999
Q ss_pred EeeCCCc---ceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC---cceEEEEeecCCccEEEEEeeeCCC
Q 016224 297 VWNLETL---QCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS---GNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 297 iwd~~~~---~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
|||+|.+ .++.+ +.|.+.|+.|.|+. .+|++|+.||+++|||++.. ..+..+..|... |+++.|+|...
T Consensus 284 IWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p--ItsieW~p~e~ 360 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP--ITSIEWHPHED 360 (440)
T ss_pred EEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC--eeEEEeccccC
Confidence 9999987 33333 78999999999993 38999999999999999854 345566666654 99999998754
Q ss_pred CCcEEEEEeCCCeEEEEeCC
Q 016224 369 GKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~ 388 (393)
. .|++++.|.+|.|||+.
T Consensus 361 s--~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 361 S--VIAASGEDNQITIWDLS 378 (440)
T ss_pred c--eEEeccCCCcEEEEEee
Confidence 3 79999999999999985
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-18 Score=161.04 Aligned_cols=235 Identities=19% Similarity=0.345 Sum_probs=184.8
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecC--CceE--EEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINLG--GEVG--CMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~--~~~~--~~~~~~~~l~~~~~~~i~v~d~~~~~~~ 223 (393)
-..+|++|||+.+++.||.+-.||.|.||++..+=. ...+..+ ..+. ++...++++.++.+|.|.-||+.+.+..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence 457999999999999999999999999999988643 3344433 2233 3344666667789999999999999887
Q ss_pred -eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEe
Q 016224 224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVW 298 (393)
Q Consensus 224 -~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iw 298 (393)
.+....+.|.+++.+|. .+++|+.||.++.++...+.. +....+....+.+.+++|+++ .+++|+.||.|++|
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I--~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI--TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE--EEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 77788899999999987 999999999777776665533 333455556789999999855 68999999999999
Q ss_pred eCCCcceeeEec--------cCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224 299 NLETLQCIQTLT--------EHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369 (393)
Q Consensus 299 d~~~~~~~~~~~--------~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 369 (393)
|..++..+.... ....-|.++.+- ...|++|...|+|++||...+..++....|..+ |.+++..++.+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad--Vl~Lav~~~~d- 258 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDAD--VLALAVADNED- 258 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcc--eeEEEEcCCCC-
Confidence 999887766221 123345666665 789999999999999999988888888777776 77777665544
Q ss_pred CcEEEEEeCCCeEEEEeCCce
Q 016224 370 KPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 370 ~~~l~s~s~dg~I~iwd~~s~ 390 (393)
++++++.|+.|..|...+.
T Consensus 259 --~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 259 --RVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred --eEEEccCCCceEEEEecCC
Confidence 8999999999988877654
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.3e-19 Score=163.56 Aligned_cols=242 Identities=21% Similarity=0.282 Sum_probs=164.3
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe----CCCEEEEEcCCeEEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS----EGPWIFIGVTNFVKAWN 216 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~v~d 216 (393)
.+-..+.+|++.|.+|...|.|..|++|+.||+|+||.+.++.|++++...+.+.++.. +..+|+++....+.+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34457789999999999999999999999999999999999999999988877766542 33344444333333333
Q ss_pred CCCCc--------------------------------------eeeecCCCCcEEEEEEeCC--EEEEEeC---CCcEEE
Q 016224 217 TQTNT--------------------------------------DLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILA 253 (393)
Q Consensus 217 ~~~~~--------------------------------------~~~~~~~~~~v~~l~~~~~--~l~~~~~---dg~I~v 253 (393)
..-+. ......|...|..+.|+.. +|++... ...|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 22110 0012223444555555443 4444332 234555
Q ss_pred EEeccCCcc--c-----------------------------------cCceeecCceeeEEEEEEc--CCEEEEecCCCc
Q 016224 254 WKFNVTTNC--F-----------------------------------EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (393)
Q Consensus 254 wd~~~~~~~--~-----------------------------------~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~ 294 (393)
+++.....+ + ++++.+......|..++.+ |+.|+.|+.|+.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 544332111 0 2233333334445555554 689999999999
Q ss_pred EEEeeCCC-cceeeEeccCccceEEEEEcCC--EEEEEeCCCcEEEEEcC------CCc---ceEEEEeecC--CccEEE
Q 016224 295 IRVWNLET-LQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVWFAT------DSG---NLEVTYTHNE--EHGVLA 360 (393)
Q Consensus 295 i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~------~~~---~~~~~~~~~~--~~~v~~ 360 (393)
+..+|+.- .++.+++..|...+++++++++ ++++|+.||++.|+.-. ..- .+..+.+|.. ...|+.
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd 710 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD 710 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence 99999974 4678899999999999999975 69999999999998532 111 2333444433 356889
Q ss_pred EEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224 361 LCGMPDSEGKPVLLCSCNDNSVRFY 385 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~dg~I~iw 385 (393)
..|+|..+ +|++++.||+|++|
T Consensus 711 ~~wHP~qp---WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 711 TIWHPRQP---WLFSAGADGTIRLF 732 (733)
T ss_pred ecccCCCc---eEEecCCCceEEee
Confidence 99999877 99999999999998
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-21 Score=180.38 Aligned_cols=212 Identities=26% Similarity=0.438 Sum_probs=179.2
Q ss_pred CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEE
Q 016224 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG 207 (393)
Q Consensus 128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (393)
.-.+++||.. .+..|...|.++..-..++.+++|+.|..+-+|.+.....+.
T Consensus 13 ~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------------------- 64 (825)
T KOG0267|consen 13 ATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------------------- 64 (825)
T ss_pred eeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---------------------
Confidence 3455677643 235688888888887778899999999999899886544332
Q ss_pred cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--C
Q 016224 208 VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A 283 (393)
Q Consensus 208 ~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~ 283 (393)
.+.+|...|.++.|+.. +|++|+.+|+|++||+... +.++.+.+|...+.++.|+ +
T Consensus 65 ----------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA----k~vrtLtgh~~~~~sv~f~P~~ 124 (825)
T KOG0267|consen 65 ----------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA----KIVRTLTGHLLNITSVDFHPYG 124 (825)
T ss_pred ----------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhh----hhhhhhhccccCcceeeeccce
Confidence 35789999999999987 8999999999999999977 6677899999999999998 4
Q ss_pred CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL 361 (393)
Q Consensus 284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 361 (393)
.+++.|+.|..+++||++..-+.+.+.+|...+..+.++ |.++++++.|..++|||+..++.+..+..|... +..+
T Consensus 125 ~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~--v~sl 202 (825)
T KOG0267|consen 125 EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK--VQSL 202 (825)
T ss_pred EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc--cccc
Confidence 588999999999999999999999999999999999988 679999999999999999888777777766654 6777
Q ss_pred EeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.|+|..- ++++|+.|++|++||++++++
T Consensus 203 e~hp~e~---Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 203 EFHPLEV---LLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred ccCchhh---hhccCCCCceeeeeccceeEE
Confidence 7777654 899999999999999998876
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=153.33 Aligned_cols=206 Identities=19% Similarity=0.279 Sum_probs=148.6
Q ss_pred EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (393)
Q Consensus 144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~ 223 (393)
..|++|.+.|++++|+.||++|+|++.|++|+||+++.-.... -+.+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e---------------------------------Hr~~ 126 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE---------------------------------HRCI 126 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh---------------------------------hhHh
Confidence 4678999999999999999999999999999999987632110 0111
Q ss_pred eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccC--------ceeecCceeeEEEEEE--cCCEEEEec
Q 016224 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP--------AASLKGHSLAVVSLVV--GANKLYSGS 290 (393)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~--------~~~~~~~~~~v~~l~~--~~~~l~sg~ 290 (393)
...-.-+..+.+.|.|| .++..-...++++|.+...+...-. ....+.|...+..+-. ++.+|++++
T Consensus 127 R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 127 RQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred hccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec
Confidence 11222335678889988 6666667778999987654321000 1112335556655544 356899999
Q ss_pred CCCcEEEeeCCCcceeeEeccCccceE--EEEEcCCEEEEEeCCCcEEEEEcCCC--------cceEEEEeecCCccEEE
Q 016224 291 MDNSIRVWNLETLQCIQTLTEHTSVVM--SLLCWDQFLLSCSLDKTIKVWFATDS--------GNLEVTYTHNEEHGVLA 360 (393)
Q Consensus 291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~--~l~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~ 360 (393)
.|..|.+||++ |+.+.++......-+ ++..+|+++++++..-.|++|.+--. .....+.+|. ..|+.
T Consensus 207 ~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~--saV~~ 283 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ--SAVLA 283 (420)
T ss_pred CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch--hheee
Confidence 99999999999 899988876554443 44455899999999999999986321 1233444554 45999
Q ss_pred EEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
++|++++. .++|.|.||+++|||+.
T Consensus 284 ~aFsn~S~---r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 284 AAFSNSST---RAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeeCCCcc---eeEEEecCCcEEEeecc
Confidence 99998877 89999999999999975
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.8e-20 Score=170.42 Aligned_cols=229 Identities=17% Similarity=0.280 Sum_probs=169.3
Q ss_pred CEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCceEE-------EEeCCCEEEE-EcCCeEEEEECCC
Q 016224 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEVGC-------MISEGPWIFI-GVTNFVKAWNTQT 219 (393)
Q Consensus 152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~-------~~~~~~~l~~-~~~~~i~v~d~~~ 219 (393)
...+|...++-..|+.++.. .++|+.+.... +...+........ -....++|++ +..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 34455666777777777654 67787765432 2222111111100 1124555665 4788999999987
Q ss_pred ---Ccee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEe
Q 016224 220 ---NTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSG 289 (393)
Q Consensus 220 ---~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg 289 (393)
++.+ .+..|...+.++.|++. +|++|++||.|++||++.. .....+.+....|..+.|. ++.|+++
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~----~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK----KSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc----cccccccccchhhhceeeccCCCceEEEe
Confidence 3333 78899999999999764 9999999999999999987 4456666678888888886 5689999
Q ss_pred cCCCcEEEeeCCC-cceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224 290 SMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366 (393)
Q Consensus 290 ~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 366 (393)
...|.+++||++. .++...+.+|.++|.++.|++ .+||||+.|++|+|||..+.+...... .....++..+.|-|.
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-InTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-INTIAPVGRVKWRPA 274 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-EeecceeeeeeeccC
Confidence 9999999999986 566788899999999999994 599999999999999997655433333 233456889999998
Q ss_pred CCCCcEEEEEe--CCCeEEEEeCC
Q 016224 367 SEGKPVLLCSC--NDNSVRFYDLP 388 (393)
Q Consensus 367 ~~~~~~l~s~s--~dg~I~iwd~~ 388 (393)
.+. .|++++ .|-.|+|||+.
T Consensus 275 ~~~--hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 275 RSY--HLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred ccc--hhhhhhccccceEEEEeec
Confidence 663 566665 48899999986
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=2.3e-18 Score=154.14 Aligned_cols=272 Identities=15% Similarity=0.212 Sum_probs=202.8
Q ss_pred eeecceEEeeEecC-cEEEecCCCeEEEEECCCC----------c-----------------------------EEEEEe
Q 016224 107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDG----------F-----------------------------KLLTQL 146 (393)
Q Consensus 107 ~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~----------~-----------------------------~~~~~l 146 (393)
.|+..|.|+....+ .+++|+.|..|..||-.-. + ....+.
T Consensus 285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 68889999988755 6778999999999983200 0 001233
Q ss_pred cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee
Q 016224 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL 223 (393)
Q Consensus 147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~ 223 (393)
++|......++.+|+.+.++|++.|++|++|+ ..+.+.+.....+..+. .+.+ .+++| ..|...+.|.++...+
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeE
Confidence 57999999999999999999999999999999 56677666666665554 4667 66666 7889999999998888
Q ss_pred eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEee
Q 016224 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWN 299 (393)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd 299 (393)
++.....++++++|+|+ +||+|+.|+.|++|.+......+.......+ .+|+.+.|+ +++|.+-+.|-.|..|.
T Consensus 442 ~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 442 TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 77666999999999998 9999999999999999887665544444444 889999986 66899999999999996
Q ss_pred CCCcceeeEec------------------cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCc
Q 016224 300 LETLQCIQTLT------------------EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEH 356 (393)
Q Consensus 300 ~~~~~~~~~~~------------------~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~ 356 (393)
....+.+...+ .+...+..++-+ .+++++|...|+|++|...-.+. ......|. .
T Consensus 520 ~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs--~ 597 (626)
T KOG2106|consen 520 PSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHS--S 597 (626)
T ss_pred cccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccc--c
Confidence 54333222211 122223223222 57899999999999998753332 22333343 4
Q ss_pred cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 357 ~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.+..++|..... .|++.+.|..|..|++.
T Consensus 598 ~vt~V~Fl~~d~---~li~tg~D~Si~qW~lv 626 (626)
T KOG2106|consen 598 HVTNVAFLCKDS---HLISTGKDTSIMQWRLV 626 (626)
T ss_pred eeEEEEEeeCCc---eEEecCCCceEEEEEeC
Confidence 488899987655 67777799999999873
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.3e-18 Score=162.37 Aligned_cols=255 Identities=17% Similarity=0.169 Sum_probs=195.7
Q ss_pred ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
..|....+-+.|.++ .+++.+.||.|++|+.....+.-.++.-+...|.+++.. +.+|++|+.+++|.+|...+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 345555666777655 455799999999999765422233344488889888875 4599999999999999998764
Q ss_pred ---EEEEEecCCceEEEEeCCCEEEEEc-CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224 184 ---CAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (393)
Q Consensus 184 ---~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~ 256 (393)
.+..+..+-...++..+|.++++|. |-.|++.++...... .+.+|..+|.++.|+|+ +||+.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 5667777777888888999999874 558999999877655 89999999999999998 9999999999999999
Q ss_pred ccCCccccCceeec---Cc-eeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEc--CCEE
Q 016224 257 NVTTNCFEPAASLK---GH-SLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFL 326 (393)
Q Consensus 257 ~~~~~~~~~~~~~~---~~-~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l 326 (393)
..+.....+..... .. ...+..++|++ ..|+....|+.|++|+..+++....+.. +...+..+.|+ |+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 98743221111111 11 33456677764 4788889999999999999998888764 44458888888 8899
Q ss_pred EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
|+++.||.|.|||..+. ..|.....|.+++|.|+.+
T Consensus 248 AAs~~~g~I~vWnv~t~------~~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDTH------ERHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred eeeccCCcEEEEecccc------hhccccceeEEEecCCCCC
Confidence 99999999999999762 2255555688889988766
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.4e-19 Score=151.62 Aligned_cols=244 Identities=17% Similarity=0.234 Sum_probs=185.0
Q ss_pred eeecceEEeeEecC------cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEEC
Q 016224 107 VIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDC 179 (393)
Q Consensus 107 ~~~~~i~c~~~~~~------~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~ 179 (393)
.++...+-+.|+-+ -+++|+.-|.|+|.|+.++ ++...+.+|...|..|.|.|+. ++|+++|.|.+|++|++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 34555566666522 2456889999999999998 8999999999999999999964 79999999999999999
Q ss_pred CCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~ 257 (393)
++..|+..+.. ..+|.+.|.++.|+.+ +|++++.|.+|++|++.
T Consensus 166 ~~~~Cv~VfGG----------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 166 QTDVCVAVFGG----------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred cCCeEEEEecc----------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 99999877642 3589999999999887 99999999999999988
Q ss_pred cCCcc--cc---------------------Cc-eeecCceeeEEEEEEcCCEEEEecCCCcEEEeeC-CCcce-------
Q 016224 258 VTTNC--FE---------------------PA-ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL-ETLQC------- 305 (393)
Q Consensus 258 ~~~~~--~~---------------------~~-~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~-~~~~~------- 305 (393)
..... .+ +. .+..-|...|-|+.|-++++++-+-++.|..|.. +-.+.
T Consensus 212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~ 291 (385)
T KOG1034|consen 212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPP 291 (385)
T ss_pred hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCC
Confidence 42110 00 00 1223467777777788999999999999999987 21221
Q ss_pred ------eeEeccCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcce--EEEEeecCCccEEEEEeeeCCCCCcEE
Q 016224 306 ------IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNL--EVTYTHNEEHGVLALCGMPDSEGKPVL 373 (393)
Q Consensus 306 ------~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l 373 (393)
+.++.-....+.-+.|. .++|+.|...|.|.+||++..+.. ..+........|...+|+.++. +|
T Consensus 292 es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs---~l 368 (385)
T KOG1034|consen 292 ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS---IL 368 (385)
T ss_pred ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc---EE
Confidence 23344444455555554 678999999999999999876552 2233334445688888877665 99
Q ss_pred EEEeCCCeEEEEeCC
Q 016224 374 LCSCNDNSVRFYDLP 388 (393)
Q Consensus 374 ~s~s~dg~I~iwd~~ 388 (393)
+..++|++|.-||..
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 999999999999864
No 142
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=9.1e-19 Score=169.95 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=188.4
Q ss_pred CCcccccceeecceEEeeEecCc--EEEecCCCeEEEEECCC-----------------CcEEEEEecCCcCCEEEEEec
Q 016224 99 NSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD-----------------GFKLLTQLEGHQKVVSGITLP 159 (393)
Q Consensus 99 ~~~~~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~-----------------~~~~~~~l~~h~~~I~~i~~s 159 (393)
+.+.-....|...|.|+.|++++ +++|+.|+.|.||.... .++.+..+.+|...|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 34444456788999999999884 55799999999998762 135788999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-e--EEEEeCCCEEEEE-cCCeEEEEECCCCcee-eec------CC
Q 016224 160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-V--GCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLS------GP 228 (393)
Q Consensus 160 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~------~~ 228 (393)
|++.+|++++.|++|.|||..+.+.+..+..+.. + ..+.+-|+++++- .|++|++|++..-... .+. ..
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 9999999999999999999999999888876643 3 3455789999984 7889999997663322 222 23
Q ss_pred CCcEEEEEEeCC--EEEEEeC----CCcEEEEEeccCCccccCceeecCceeeEEEEEEcC-------C-----------
Q 016224 229 VGQVYAMAVGND--LLFAGTQ----DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-------N----------- 284 (393)
Q Consensus 229 ~~~v~~l~~~~~--~l~~~~~----dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~----------- 284 (393)
......+.|+|| +|++... -..+.|.+-.+ ++....+.+|..++.++.|++ +
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 346788999999 6766432 23466665432 466678899999999999852 1
Q ss_pred -EEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 016224 285 -KLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS 343 (393)
Q Consensus 285 -~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~ 343 (393)
.+|+|+.|++|.||.....+++.... -....|..++|+ |-.|+++|.||+|.++...+.
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 57899999999999998777765543 346689999999 678999999999999988643
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=1.2e-19 Score=162.26 Aligned_cols=231 Identities=21% Similarity=0.385 Sum_probs=183.1
Q ss_pred CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecC---Cce--EEEEeCCCEEEEE-cCCeEEEEECC
Q 016224 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG---QCAGVINLG---GEV--GCMISEGPWIFIG-VTNFVKAWNTQ 218 (393)
Q Consensus 148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~---~~~--~~~~~~~~~l~~~-~~~~i~v~d~~ 218 (393)
.|..-|.++..+...++++||+. |.|+|||+... ..+..+..- .-+ .-+.++++.|++| .-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 48889999999999999999986 68999999653 223333222 112 2234788888877 55599999998
Q ss_pred CCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC
Q 016224 219 TNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM 291 (393)
Q Consensus 219 ~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~ 291 (393)
..... .+....-..++++.++| ..++++.||.|.|||+... ..+..+.+|...+.||..+ |..|.+|+-
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecCCC
Confidence 87654 33344456778888998 8899999999999999987 6788999999999999886 779999999
Q ss_pred CCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224 292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369 (393)
Q Consensus 292 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 369 (393)
|.+||.||+++++.+.... ....|.++-+. +++|+.|-..+.+.|......+ ....|.++.-|+++.|.+.+.
T Consensus 572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cGk- 646 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCGK- 646 (705)
T ss_pred ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecccCc-
Confidence 9999999999988776554 45678888776 7899999999999998775443 334455666799999988776
Q ss_pred CcEEEEEeCCCeEEEEeCCce
Q 016224 370 KPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 370 ~~~l~s~s~dg~I~iwd~~s~ 390 (393)
++++.+.|+.+..|..+-|
T Consensus 647 --wfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 647 --WFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred --eeeecCchhhhhhccCccc
Confidence 9999999999999998765
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.3e-20 Score=180.63 Aligned_cols=238 Identities=18% Similarity=0.277 Sum_probs=187.8
Q ss_pred cceEEeeEecC-----c-EEEecCCCeEEEEECCC-----CcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEE
Q 016224 110 TDILCRNWVQG-----N-CMYGEKCKFLHSWTVGD-----GFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVW 177 (393)
Q Consensus 110 ~~i~c~~~~~~-----~-~~~g~~dg~i~vwd~~~-----~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iw 177 (393)
..-.+++|... + ++-|..||.|.+||... ....+.+...|++.|..+.|++.+ +.||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 35677888522 2 45588999999999764 245677888999999999999965 599999999999999
Q ss_pred ECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 016224 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (393)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vw 254 (393)
|+.+-+.-... ......+.|.+++|+.. .|++++.+|.+.||
T Consensus 145 Dlnn~~tP~~~-----------------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 145 DLNKPETPFTP-----------------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred ccCCcCCCCCC-----------------------------------CCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 99874322111 01235678999999887 89999999999999
Q ss_pred EeccCCccccCceeecCce--eeEEEEEEcCC---EEEEecCCC---cEEEeeCCC-cceeeEeccCccceEEEEEc---
Q 016224 255 KFNVTTNCFEPAASLKGHS--LAVVSLVVGAN---KLYSGSMDN---SIRVWNLET-LQCIQTLTEHTSVVMSLLCW--- 322 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~---~l~sg~~dg---~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--- 322 (393)
|++.. +++..+..+. ..+..+.|+++ .|++++.|. .|.+||+|. ..+++++++|...|.++.|.
T Consensus 190 Dlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 190 DLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred cccCC----CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 99987 3344444443 34678889865 577766553 799999985 56788889999999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 323 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
..+|++++.|++|.+|+..+++.+..+.. ....+..+.|.|..++ +|++++-||.|.||.+.+.
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~--~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPS--VMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcc--hhhhheeccceeeeeeecC
Confidence 46999999999999999999887777665 3456999999998765 7899999999999998765
No 145
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=7.8e-19 Score=152.77 Aligned_cols=209 Identities=19% Similarity=0.278 Sum_probs=161.6
Q ss_pred EecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224 145 QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL 223 (393)
Q Consensus 145 ~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~ 223 (393)
.+.+|+++|..++|+| +.+.|||||.|.+|+||++..+.....+. ....
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------epvv 125 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------EPVV 125 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------------------------cceE
Confidence 4568999999999998 56789999999999999998765543332 2233
Q ss_pred eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEe
Q 016224 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW 298 (393)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iw 298 (393)
.+.+|...|--+.|+|. .|++++.|.+|.+||+.++. .+..+. |...|.+++|+ |.+|++.+.|..|+||
T Consensus 126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge----ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE----ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc----eeeecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence 67899999999999986 89999999999999999984 344455 99999999985 7899999999999999
Q ss_pred eCCCcceeeEeccCccce-EEEEEc--CCEEEEEe---CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcE
Q 016224 299 NLETLQCIQTLTEHTSVV-MSLLCW--DQFLLSCS---LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372 (393)
Q Consensus 299 d~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 372 (393)
|.++++.+..-.+|.+.- ..+.|- +.++.||- .+.++-+||..+.+....+.......+|+---|-++.. -+
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~--iv 278 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS--IV 278 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC--EE
Confidence 999999999988887653 222232 55444443 37889999998777666666555556676666655543 24
Q ss_pred EEEEeCCCeEEEEeCCce
Q 016224 373 LLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 373 l~s~s~dg~I~iwd~~s~ 390 (393)
.++|-.|+.||.|++..-
T Consensus 279 Yl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EEEecCCcceEEEEecCC
Confidence 456667999999998653
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=160.32 Aligned_cols=238 Identities=19% Similarity=0.318 Sum_probs=173.3
Q ss_pred cccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEE--ecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEE
Q 016224 103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQ--LEGHQKVVSGITLPSG-SDKLYSGSKDETVRVW 177 (393)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~--l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iw 177 (393)
..-.-|.+.|..+.|.++ .+++++.|.++++||+++. +++.. +.+|...|.+++|.+. ...+++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 445668889999999987 4667999999999999988 77766 8999999999999985 5678999999999999
Q ss_pred ECCCCeEE---------------------------EEEec-C----CceEE-EEeCCCEEEE-E-cCCeEEEEECCCCce
Q 016224 178 DCASGQCA---------------------------GVINL-G----GEVGC-MISEGPWIFI-G-VTNFVKAWNTQTNTD 222 (393)
Q Consensus 178 d~~~~~~~---------------------------~~~~~-~----~~~~~-~~~~~~~l~~-~-~~~~i~v~d~~~~~~ 222 (393)
|+.-...- ..... . ..+.. ++.|...|++ | .|+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 98633200 00000 0 11122 2345666664 4 589999999988764
Q ss_pred e---------eecCC---CCcEEEEEEeC--CEEEEEeCCCcEEEEEeccCCccccCceeecCceee---E-EEEEEcCC
Q 016224 223 L---------SLSGP---VGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA---V-VSLVVGAN 284 (393)
Q Consensus 223 ~---------~~~~~---~~~v~~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~---v-~~l~~~~~ 284 (393)
. .+..+ .-.+.++..+. .+|++.+.|+.|++|++..... .+...+.++... + ..+.+++.
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI--SPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc--CchhhccCcccceeeeeeecCCCCc
Confidence 3 11112 22355566554 4777777899999999987654 444555544322 2 34567788
Q ss_pred EEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEcC---CEEEEEeCCCcEEEEEcCCC
Q 016224 285 KLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDS 343 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~ 343 (393)
++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.+ .-+++++.|..++||++..+
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999999998754 4566789999999999984 35788899999999998543
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=5.3e-18 Score=144.15 Aligned_cols=260 Identities=20% Similarity=0.283 Sum_probs=195.1
Q ss_pred ceEEeeEecCc--EEEecCCCeEEEEECCCC-----------cEEEEEec-CCcCCEEEEEec-------CCCCEEEEEe
Q 016224 111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDG-----------FKLLTQLE-GHQKVVSGITLP-------SGSDKLYSGS 169 (393)
Q Consensus 111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-----------~~~~~~l~-~h~~~I~~i~~s-------~~~~~l~s~s 169 (393)
..-.+.|+|++ +++-+.|..+++|++... ++...+++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567899884 557889999999998621 11111111 134567777773 6788999999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC--------ceEEEEeCCCEEEEEcCCeEEEEEC-CCCcee---e-----ecCCCCcE
Q 016224 170 KDETVRVWDCASGQCAGVINLGG--------EVGCMISEGPWIFIGVTNFVKAWNT-QTNTDL---S-----LSGPVGQV 232 (393)
Q Consensus 170 ~dg~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~i~v~d~-~~~~~~---~-----~~~~~~~v 232 (393)
.|.-|++||.-+|+....+..-. ...++.++|..|++|..+.|+++|+ +.++.. . ..+..+-+
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999999887775422 2345568999999999999999999 555532 1 23346778
Q ss_pred EEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC-CCcEEEeeCCC-cce
Q 016224 233 YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-DNSIRVWNLET-LQC 305 (393)
Q Consensus 233 ~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg~i~iwd~~~-~~~ 305 (393)
.+++|+|- .+++++....+-||.-... .++..+.+|.+.|+.+.|. |+.|++|.. |-.|..||++. +.+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 89999986 8999999999888876655 6778888999999999985 788888874 77999999986 566
Q ss_pred eeEeccCcc-ceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224 306 IQTLTEHTS-VVMSLLCW----DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (393)
Q Consensus 306 ~~~~~~~~~-~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d 379 (393)
+..+..|.. .-..|.|+ +++|++|+.||.|++||++.... +..+..+. ..+..++++|.-+ ++++++..
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mp---ilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMP---ILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccc---eeeeccCc
Confidence 777877766 33455555 78999999999999999988554 44433333 3478888888776 77777643
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=2.2e-17 Score=153.09 Aligned_cols=282 Identities=21% Similarity=0.286 Sum_probs=201.1
Q ss_pred ceeecceEEeeEe---c-C-cEEEecCCCeEEEEECCCCc--------------------EEE----------EEecCCc
Q 016224 106 AVIKTDILCRNWV---Q-G-NCMYGEKCKFLHSWTVGDGF--------------------KLL----------TQLEGHQ 150 (393)
Q Consensus 106 ~~~~~~i~c~~~~---~-~-~~~~g~~dg~i~vwd~~~~~--------------------~~~----------~~l~~h~ 150 (393)
..|..-|..++|. . + .+++++.|..|+||.+.-+- ..+ ..+.||.
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 3466667777775 2 2 24469999999999864210 111 2335999
Q ss_pred CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecC---C----ceEEEE-eCCCEEEE-EcCCeEEEEECCC
Q 016224 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLG---G----EVGCMI-SEGPWIFI-GVTNFVKAWNTQT 219 (393)
Q Consensus 151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~---~----~~~~~~-~~~~~l~~-~~~~~i~v~d~~~ 219 (393)
+.|.++.|+|.+..|++++.|.++.+|...+.. =+.....+ + -..++. +++..+++ |..|..++|..+.
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 999999999999999999999999999877652 22222222 1 123333 45555554 6888999999544
Q ss_pred Cce----eeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC---------------------------------
Q 016224 220 NTD----LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT--------------------------------- 260 (393)
Q Consensus 220 ~~~----~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~--------------------------------- 260 (393)
... ..+.+|...|.+++|+|. +|++.+.|.+-++|-.-..+
T Consensus 348 ~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 348 KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc
Confidence 332 266789999999999876 88888888777765311000
Q ss_pred ---------------------------------------------ccc--------------------------------
Q 016224 261 ---------------------------------------------NCF-------------------------------- 263 (393)
Q Consensus 261 ---------------------------------------------~~~-------------------------------- 263 (393)
..+
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 000
Q ss_pred --------cCceeecCceeeEEEEEEc--CCEEEEecCC-----CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224 264 --------EPAASLKGHSLAVVSLVVG--ANKLYSGSMD-----NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL 326 (393)
Q Consensus 264 --------~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l 326 (393)
..++.+.+|...|.+++.+ ++++|+++.. ..|++|+..+...++.+.+|.-.|+.+.|+ +++|
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 0013345788889999887 7789988753 469999999999999999999999999999 7899
Q ss_pred EEEeCCCcEEEEEcCCCcceEEEE--eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 327 LSCSLDKTIKVWFATDSGNLEVTY--THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
++.+.|.++.+|...+......-+ ...+..-|.+..|+|+.. +|+|+|.|.+|++|..+..
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~---~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK---YFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc---eeEEecCCceEEEEeccCc
Confidence 999999999999875443322211 122233477888888776 8999999999999998765
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.4e-18 Score=152.80 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=184.2
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCc--CCEEEEEecCCCC-EEEEEeCCCcEEEEECCCC--eEEEEEecCC-ce
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ--KVVSGITLPSGSD-KLYSGSKDETVRVWDCASG--QCAGVINLGG-EV 194 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~--~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~-~~ 194 (393)
++.+++...++++||+... .....+..|+ -.|.++.|+.... .+++.+.|..|++|.-... +....-.... ..
T Consensus 4 Nl~~aS~gd~~kl~D~s~~-~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDL-ETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred ceeeeccCCceEEeecccc-cCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence 4566777788999998754 3333443333 3488999976553 2334456889999975432 1211111111 11
Q ss_pred EE--EEeCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224 195 GC--MISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (393)
Q Consensus 195 ~~--~~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 268 (393)
.| ..+...++++ |..+.|+|||++..... .+..|...|+++.++.. +|++++..|.|.|..+.++.. ...
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~----tt~ 158 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK----TTT 158 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc----ccc
Confidence 22 2334455555 47789999999966655 78899999999999765 999999999999999988742 233
Q ss_pred ecCc-eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEe-ccCccceEEEEEc---CCEEEEEeCCCcEEEEEc
Q 016224 269 LKGH-SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 269 ~~~~-~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~ 340 (393)
+... ...|.-+.++. .+|.+++.+|.|.+||+....++..+ +.|..+...|+|+ +.+|++.+.|.+|.+||+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 3322 33444566653 36889999999999999988877665 5799999999998 458999999999999999
Q ss_pred CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
+.......+. ...+..+++|++++. +|+.|...|.|..||++..
T Consensus 239 ~s~~s~~~l~---y~~Plstvaf~~~G~---~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 239 RSQASTDRLT---YSHPLSTVAFSECGT---YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ccccccceee---ecCCcceeeecCCce---EEEeecCCceEEEEecccC
Confidence 8554433332 233477888877766 9999999999999999864
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=7.2e-19 Score=155.12 Aligned_cols=201 Identities=20% Similarity=0.279 Sum_probs=155.2
Q ss_pred cceeecceEEeeEec---CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECC
Q 016224 105 RAVIKTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~ 180 (393)
...|...|..+.|.. +-+++|+.|.+|.+||+.++ ++..++..|.+.|.+++|+| ...+|++|+.|++|.+.|++
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 345777788888864 34668999999999999999 89999999999999999988 56899999999999999998
Q ss_pred CCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~ 257 (393)
...... . .....+.|-.++|.+. .+++++.||+|+-+|++
T Consensus 318 ~~~~s~----------------------------------~---~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 318 DPSNSG----------------------------------K---EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred CccccC----------------------------------c---eEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 522110 0 1122456677777664 89999999999999999
Q ss_pred cCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcce--eeEeccCccceEEEEEc---CCEEEEE
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTSVVMSLLCW---DQFLLSC 329 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~---~~~l~s~ 329 (393)
... +++.+++.|...|.+|+++ ++++++++.|+.|++|++..-.. +..-...-+...|.++. ...++.|
T Consensus 361 ~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 361 NPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred CCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEec
Confidence 876 7889999999999999997 56899999999999999875333 21111111223444444 3478889
Q ss_pred eCCCcEEEEEcCCCcce
Q 016224 330 SLDKTIKVWFATDSGNL 346 (393)
Q Consensus 330 s~dg~i~iwd~~~~~~~ 346 (393)
+..+.++|||+.+...+
T Consensus 438 G~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CccceEEEeecccChhH
Confidence 99999999999776544
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=2.3e-18 Score=152.52 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=161.2
Q ss_pred EEEEEecCCcCCEEEEEecCCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECC
Q 016224 141 KLLTQLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~ 218 (393)
......+-|...|++++|+|.. +++|+|+.-|+|-+||+.+.+..
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------------------------------- 223 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------------------------------- 223 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------------------------
Confidence 4455667789999999999965 58899999999999999633211
Q ss_pred CCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224 219 TNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN 293 (393)
Q Consensus 219 ~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg 293 (393)
......+..|..+|.+|.|+|. .+++.+.||+|++-|++.... +.+............+.+. ...++.+..=|
T Consensus 224 ~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 224 KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEeeccc
Confidence 1112245688999999999986 899999999999999987643 3344443344445555554 34566676667
Q ss_pred cEEEeeCCCcce-eeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceE--EEEeecCCccEEEEEeeeCC
Q 016224 294 SIRVWNLETLQC-IQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLE--VTYTHNEEHGVLALCGMPDS 367 (393)
Q Consensus 294 ~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~ 367 (393)
...+||+++... ...+.-|...|.++++. +.+|+|++.|++++|||++...... .+....+...|.+..|+|.+
T Consensus 302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 999999998654 66777899999999998 5689999999999999998655433 35555556679999999986
Q ss_pred CCCcEEEEEeCCCeEEEEeCC
Q 016224 368 EGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 368 ~~~~~l~s~s~dg~I~iwd~~ 388 (393)
. .|+|.+.|..|+|||..
T Consensus 382 g---tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 382 G---TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred C---ceEeeccCCceEEeecc
Confidence 5 49999999999999984
No 152
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=1.6e-16 Score=143.84 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=162.5
Q ss_pred eEEeeEecCc--E-EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEEEE
Q 016224 112 ILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGV 187 (393)
Q Consensus 112 i~c~~~~~~~--~-~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~ 187 (393)
+.++.|++++ + ++++.++.|++||..++ +.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.+.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATG-EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCC-cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 4567888764 3 34678899999999988 66777765544 5678999999977655 5689999999999888877
Q ss_pred EecCCce--EEEEeCCCEEEEEcC--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEeccCC
Q 016224 188 INLGGEV--GCMISEGPWIFIGVT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 188 ~~~~~~~--~~~~~~~~~l~~~~~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~vwd~~~~~ 260 (393)
+...... ..+.+++.+++++.. ..+.+||..+++..........+..+.|+++ .| +++..++.|++||+.+..
T Consensus 111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 7644332 344578888887643 3677889988776533233345677888887 55 445569999999998763
Q ss_pred ccccCceeecC-----c--eeeEEEEEE--cCCEE-EEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEE
Q 016224 261 NCFEPAASLKG-----H--SLAVVSLVV--GANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS 328 (393)
Q Consensus 261 ~~~~~~~~~~~-----~--~~~v~~l~~--~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s 328 (393)
. ...+.. + ......+.+ +++++ ++.+.++.|.+||+++++.+..+. +...+.++.|+ +++|++
T Consensus 191 ~----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 191 V----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred e----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEE
Confidence 2 222111 1 111223444 45664 444567789999999988876654 34468888887 668877
Q ss_pred E-eCCCcEEEEEcCCCcceEEEEe
Q 016224 329 C-SLDKTIKVWFATDSGNLEVTYT 351 (393)
Q Consensus 329 ~-s~dg~i~iwd~~~~~~~~~~~~ 351 (393)
+ +.++.|++||+.+.+.+..+..
T Consensus 266 ~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 266 TNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEEEc
Confidence 6 5689999999998877776654
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=1.4e-17 Score=152.87 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=123.0
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc---ccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeC
Q 016224 230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNL 300 (393)
Q Consensus 230 ~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~ 300 (393)
..|+.+.|+|- .|++++.||.|++|.+..+... ..+...+..|...|+++.|.+ +.|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 35667777763 8999999999999999875432 356677889999999999984 68999999999999999
Q ss_pred CCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224 301 ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (393)
Q Consensus 301 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~ 378 (393)
++++....+.+|.+.|..++|+ |+.+++.+.||+|++|..++.+.............-..+.|..++. ++++.+-
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr---~viv~Gf 784 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGR---IVIVVGF 784 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCc---EEEEecc
Confidence 9999999999999999999999 7899999999999999998766543322222223344566666544 6766655
Q ss_pred C----CeEEEEeCCce
Q 016224 379 D----NSVRFYDLPSV 390 (393)
Q Consensus 379 d----g~I~iwd~~s~ 390 (393)
| ..|.+||.++.
T Consensus 785 dk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTL 800 (1012)
T ss_pred cccchhhhhhhhhhhc
Confidence 4 45777776543
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.7e-17 Score=136.89 Aligned_cols=274 Identities=14% Similarity=0.160 Sum_probs=180.7
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCc----EEEEEecCCcCCEEEEEecCCCCEE-EEEeCCCcEEEE
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF----KLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVW 177 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~----~~~~~l~~h~~~I~~i~~s~~~~~l-~s~s~dg~v~iw 177 (393)
.-.|...|+|++|+.+ .+++.+.|+.|++|++.+=. +.++. .-.-+.-+.++|.||-+-+ ++.-...++++|
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 4468889999999877 46689999999999987520 11111 1112355778999987654 445556689999
Q ss_pred ECCCCe---EEEEEe------c----CCceE--EEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-
Q 016224 178 DCASGQ---CAGVIN------L----GGEVG--CMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND- 240 (393)
Q Consensus 178 d~~~~~---~~~~~~------~----~~~~~--~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~- 240 (393)
.+...+ ....+. . ...+. .+...+.+|.+. .|..|.+|+++......+......-+..+.+|+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCC
Confidence 875322 111110 0 01111 123456677654 778999999994444466666666777888888
Q ss_pred -EEEEEeCCCcEEEEEeccCCc----cccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCC-------ccee
Q 016224 241 -LLFAGTQDGAILAWKFNVTTN----CFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET-------LQCI 306 (393)
Q Consensus 241 -~l~~~~~dg~I~vwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~-------~~~~ 306 (393)
++++++..--|++|.+--... .......+++|...|.+++|++ .++++.+.||+++|||+.- .+.+
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 888999999999998743321 1244567899999999999975 4899999999999999852 1222
Q ss_pred eEec-----cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224 307 QTLT-----EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (393)
Q Consensus 307 ~~~~-----~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d 379 (393)
++.. ....++ .+..+ ++.|+. +....|++|..++++....+.. .+...+.+++|.+++. +++|++ |
T Consensus 321 k~g~~pl~aag~~p~-RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~-~h~~~Is~is~~~~g~---~~atcG-d 393 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPV-RLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELED-IHSTTISSISYSSDGK---YIATCG-D 393 (420)
T ss_pred hcCCcchhhcCCCce-EEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHH-hhcCceeeEEecCCCc---EEeeec-c
Confidence 2221 111222 44444 555554 4566899999988766554443 3334588999988766 788776 6
Q ss_pred CeEEEEe
Q 016224 380 NSVRFYD 386 (393)
Q Consensus 380 g~I~iwd 386 (393)
..++++.
T Consensus 394 r~vrv~~ 400 (420)
T KOG2096|consen 394 RYVRVIR 400 (420)
T ss_pred eeeeeec
Confidence 6788765
No 155
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=6.1e-18 Score=139.99 Aligned_cols=274 Identities=16% Similarity=0.242 Sum_probs=189.4
Q ss_pred eeecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224 107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 107 ~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
.|...++|+.|..+ .++.|..-|.|++|++.+. +.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+..
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 34557888877644 6778999999999999988 6666677 67889999998887 5788999999999999987654
Q ss_pred EEEEecCCceE-----EEEeC---C-CEEEEEcCC--eEEEEECCCCcee-----eecCCCCcEEEEEEeCC-----EEE
Q 016224 185 AGVINLGGEVG-----CMISE---G-PWIFIGVTN--FVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND-----LLF 243 (393)
Q Consensus 185 ~~~~~~~~~~~-----~~~~~---~-~~l~~~~~~--~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~-----~l~ 243 (393)
+..-....... ++... . ..++.-..+ .+++-|......+ ......+.+.+..+.-+ +|+
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 43322111100 01111 1 122221111 1233333222222 11234456777764322 788
Q ss_pred EEeCCCcEEEEEeccCCccc------cCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCC--cce--eeEecc
Q 016224 244 AGTQDGAILAWKFNVTTNCF------EPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET--LQC--IQTLTE 311 (393)
Q Consensus 244 ~~~~dg~I~vwd~~~~~~~~------~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~--~~~--~~~~~~ 311 (393)
+|.++|.+.+||+..+.... +.......|..+|.++.++. +.=++|+.+..+..|++.. +.+ -.++..
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 99999999999999864321 23344567899999999874 3457788888899998863 222 122222
Q ss_pred Cccce--EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 312 HTSVV--MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 312 ~~~~v--~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
....| ..|..+++.+++++.|+.||||..++...+..+..|.. .+.+++|+|+.+ +++.++.|++|.+|++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAfspd~~---lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAFSPDCE---LMAAASKDARISLWKL 322 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEeCCCCc---hhhhccCCceEEeeec
Confidence 22233 45566689999999999999999999999999988885 499999999877 9999999999999987
No 156
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=2.3e-16 Score=136.57 Aligned_cols=233 Identities=16% Similarity=0.190 Sum_probs=182.7
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCceEEEEeCCCEEE-EEcC--CeEEEEECCCCceee
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINLGGEVGCMISEGPWIF-IGVT--NFVKAWNTQTNTDLS 224 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~--~~i~v~d~~~~~~~~ 224 (393)
....|..+.|..+...|..|+.||. ++++.+.... .........+.-+.....+++ ++.+ +.+++++++.+..+-
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 3456777789999999999999984 7888765433 222222233344444444444 5533 369999999888886
Q ss_pred ecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceee---cCceeeEEEEEEcCC--EEEEec--CCCcEEE
Q 016224 225 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVGAN--KLYSGS--MDNSIRV 297 (393)
Q Consensus 225 ~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~--~l~sg~--~dg~i~i 297 (393)
-......|.++.++.+.|++.-++. |+|||++.. ++++++ ..+...+.+++++.. +++--+ ..|.|.|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~M----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDM----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccc----eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 6666789999999999887776665 999999987 444444 345667888888743 776533 4689999
Q ss_pred eeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCc-EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEE
Q 016224 298 WNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL 374 (393)
Q Consensus 298 wd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 374 (393)
||+.+.+.+.++..|.+.+.+++|+ |.+|||+|..|+ |||+.+.+++++..+........+.+++|+++++ +|+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~ 234 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLA 234 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEE
Confidence 9999999999999999999999998 889999999997 8999999999999998877788899999999887 999
Q ss_pred EEeCCCeEEEEeCCce
Q 016224 375 CSCNDNSVRFYDLPSV 390 (393)
Q Consensus 375 s~s~dg~I~iwd~~s~ 390 (393)
+.++.++|++|.++.-
T Consensus 235 ~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKV 250 (391)
T ss_pred EecCCCeEEEEEeccc
Confidence 9999999999998753
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.1e-17 Score=137.34 Aligned_cols=209 Identities=13% Similarity=0.258 Sum_probs=153.1
Q ss_pred cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeec
Q 016224 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (393)
Q Consensus 147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~ 226 (393)
.+|.+-|+++.|.+.|+++|||+.|++|+|||..+..-..... -...
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T---------------------------------s~Wr 56 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT---------------------------------SSWR 56 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe---------------------------------eeEE
Confidence 4799999999999999999999999999999975543221110 1345
Q ss_pred CCCCcEEEEEEe-CC---EEEEEeCCCcEEEEEeccCC-----ccccCceeecCceeeEEEEEEcCC----EEEEecCCC
Q 016224 227 GPVGQVYAMAVG-ND---LLFAGTQDGAILAWKFNVTT-----NCFEPAASLKGHSLAVVSLVVGAN----KLYSGSMDN 293 (393)
Q Consensus 227 ~~~~~v~~l~~~-~~---~l~~~~~dg~I~vwd~~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~----~l~sg~~dg 293 (393)
.|.+.|..+.|. |. .+++++.|+++.||.-.... ..+.....+......|+.+.|.+. .|++++.||
T Consensus 57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG 136 (361)
T ss_pred ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence 788899999985 43 89999999999999763221 123445566777889999999754 699999999
Q ss_pred cEEEeeCCC------cceeeEec-------cCccceEEEEEc-----CCEEEEEeCC-----CcEEEEEcCCCc-ceEEE
Q 016224 294 SIRVWNLET------LQCIQTLT-------EHTSVVMSLLCW-----DQFLLSCSLD-----KTIKVWFATDSG-NLEVT 349 (393)
Q Consensus 294 ~i~iwd~~~------~~~~~~~~-------~~~~~v~~l~~~-----~~~l~s~s~d-----g~i~iwd~~~~~-~~~~~ 349 (393)
.||||+.-. ..+..+++ .+..+..|+.|+ ..+|+.|+.+ +.++||...+.. +....
T Consensus 137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 999997643 33334443 456677888887 3577877766 589999876554 22222
Q ss_pred Ee-ecCCccEEEEEeeeCC-CCCcEEEEEeCCCeEEEEeCCc
Q 016224 350 YT-HNEEHGVLALCGMPDS-EGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 350 ~~-~~~~~~v~~~~~~~~~-~~~~~l~s~s~dg~I~iwd~~s 389 (393)
.. .....+|.+++|.|.. ..-.+|++++.|| |+||++..
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 11 2344569999999964 2334899999999 99999874
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=7.3e-17 Score=149.69 Aligned_cols=266 Identities=20% Similarity=0.269 Sum_probs=191.3
Q ss_pred eEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC---EEEEEeCCCcEEEEECCCCeE--EEEEec
Q 016224 116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD---KLYSGSKDETVRVWDCASGQC--AGVINL 190 (393)
Q Consensus 116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~---~l~s~s~dg~v~iwd~~~~~~--~~~~~~ 190 (393)
.|.+...++-+....|.+||..+. .....+.+|..+|+|+.|-|+++ ++++|+.|+.|.+|.++.... +..+++
T Consensus 21 sw~~~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g 99 (764)
T KOG1063|consen 21 SWGPGGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG 99 (764)
T ss_pred cccccceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC
Confidence 456777777777889999998876 78889999999999999998877 899999999999999985543 444444
Q ss_pred C-CceEEEEeCCCEEEE-EcCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccC
Q 016224 191 G-GEVGCMISEGPWIFI-GVTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 191 ~-~~~~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~ 259 (393)
. ..+.++.......++ +.++.+.+|+.+..+.. .+....--..|+++.++ +++.|+.+..|.++.-..
T Consensus 100 ~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~- 178 (764)
T KOG1063|consen 100 HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA- 178 (764)
T ss_pred cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC-
Confidence 2 233344333333343 58999999999666522 11111122234444443 777888888888886653
Q ss_pred CccccCceeecCceeeEEEEEEc---C-C-EEEEecCCCcEEEeeCCCcc---------------------eeeE-----
Q 016224 260 TNCFEPAASLKGHSLAVVSLVVG---A-N-KLYSGSMDNSIRVWNLETLQ---------------------CIQT----- 308 (393)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~l~~~---~-~-~l~sg~~dg~i~iwd~~~~~---------------------~~~~----- 308 (393)
..+.....+.+|...|.+++|. + + +|++++.|..||||.+.-+. ...+
T Consensus 179 -d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 179 -DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred -cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 3467788999999999999985 2 2 69999999999999764221 1111
Q ss_pred -----eccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEE--E-e--ecCCccEEEEEeeeCCCCCcEEEEE
Q 016224 309 -----LTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVT--Y-T--HNEEHGVLALCGMPDSEGKPVLLCS 376 (393)
Q Consensus 309 -----~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~--~-~--~~~~~~v~~~~~~~~~~~~~~l~s~ 376 (393)
+.+|...|.++.|++ ..|+++|.|.++.+|...+..-+-.- . + .....+-....|+|++. .+++-
T Consensus 258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~ 334 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAH 334 (764)
T ss_pred ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEe
Confidence 248999999999994 47999999999999987655322211 1 1 11123467778888765 89999
Q ss_pred eCCCeEEEEeC
Q 016224 377 CNDNSVRFYDL 387 (393)
Q Consensus 377 s~dg~I~iwd~ 387 (393)
+.-|..++|..
T Consensus 335 g~~Gg~hlWkt 345 (764)
T KOG1063|consen 335 GRTGGFHLWKT 345 (764)
T ss_pred cccCcEEEEec
Confidence 99999999983
No 159
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.4e-16 Score=151.22 Aligned_cols=256 Identities=13% Similarity=0.185 Sum_probs=181.5
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeE--EEEE-----ecCCceEEEE--
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQC--AGVI-----NLGGEVGCMI-- 198 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~--~~~~-----~~~~~~~~~~-- 198 (393)
+.+.||++.+...+...+. -...|+++.|+| +..+|+.|..+|.|.+||+..+.. ...+ .+..++..+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 4799999987655555555 568999999998 567888889999999999987755 2222 2233333322
Q ss_pred ---eCCCEEEEEcCCeEEEEECCCCcee-------eec------CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccC
Q 016224 199 ---SEGPWIFIGVTNFVKAWNTQTNTDL-------SLS------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 199 ---~~~~~l~~~~~~~i~v~d~~~~~~~-------~~~------~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~ 259 (393)
.+..++.++.||.|..|+++.-... ... .....+++++|.+. .|++|+++|.|..-+-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 1345777889999999988764431 111 23346788888654 9999999999987443333
Q ss_pred Ccc----ccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCC-CcceeeEeccCccceEEEEEc---CCEEEE
Q 016224 260 TNC----FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW---DQFLLS 328 (393)
Q Consensus 260 ~~~----~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~---~~~l~s 328 (393)
... ++....+..|.+.|.++.+++ ..|++++ |.+|+||... ...++..+..+...+++++|+ +..+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 222 244556677899999998873 4566665 9999999988 777888888888889999999 458999
Q ss_pred EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+..||.|.|||+.....-..............+.|++. +++|++|...|++++|++..
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~---g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN---GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCC---CcEEEEecCCCcEEEEEcCc
Confidence 99999999999975443222221111222333444443 44999999999999999964
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.9e-17 Score=157.87 Aligned_cols=264 Identities=19% Similarity=0.277 Sum_probs=185.8
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCC---cCCEEEEEecC--CCCEEEEEeCCCcEEEEEC-CCC----eEEEEEec
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGH---QKVVSGITLPS--GSDKLYSGSKDETVRVWDC-ASG----QCAGVINL 190 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h---~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~-~~~----~~~~~~~~ 190 (393)
.++++...-.|+|||.+.+ +.+..|..+ ...|+.+.+-. |..+|++|+.||.|+||+- ..+ +.+.....
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~ 1156 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS 1156 (1387)
T ss_pred eeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc
Confidence 3445555678999999988 677666544 47899999843 5678999999999999973 222 23322211
Q ss_pred -------CCceEEE---Ee-CCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeC---CEEEEEeCCCcEEEE
Q 016224 191 -------GGEVGCM---IS-EGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAW 254 (393)
Q Consensus 191 -------~~~~~~~---~~-~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~---~~l~~~~~dg~I~vw 254 (393)
......+ .. .|.++++|.-..|+|||....... ...+....|+++.-+- +.+++|..||.|++|
T Consensus 1157 Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvy 1236 (1387)
T KOG1517|consen 1157 LSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVY 1236 (1387)
T ss_pred ccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEe
Confidence 1111122 22 566666677789999999988766 3444556677776543 499999999999999
Q ss_pred EeccCCccccCceeecCceee--EEEEEEcC--C-EEEEecCCCcEEEeeCCCcceeeEe--ccCc--c-ceEEEEEc--
Q 016224 255 KFNVTTNCFEPAASLKGHSLA--VVSLVVGA--N-KLYSGSMDNSIRVWNLETLQCIQTL--TEHT--S-VVMSLLCW-- 322 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~--v~~l~~~~--~-~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~--~-~v~~l~~~-- 322 (393)
|.+..... .++...+.|... |..+.+.. - .|++|+.||.|++||++.......+ ..|. + ..+++..+
T Consensus 1237 D~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1237 DRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred ecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC
Confidence 99876542 456667778777 88888863 2 5999999999999999974332222 2232 3 47888877
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcceEEEEee-----cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-----NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 323 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
...+|+|+. +.|+||++. ++++..+... .....+.+++|+|... ++++|+.|..|.||..+...
T Consensus 1316 apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~---llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL---LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH---hhhhccCCceEEEeecCCcC
Confidence 468888888 999999985 4444433322 1224578899988766 89999999999999876543
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=4.5e-17 Score=150.44 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=197.2
Q ss_pred ceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224 111 DILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (393)
Q Consensus 111 ~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (393)
.|..++|.|++ .+.-..+..+.+||..+| .++.++++|++.|.+++|+.||+++|||+.|..|.+|+-. .+-+-.+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec
Confidence 67778888874 344556678999999999 8999999999999999999999999999999999999954 34455667
Q ss_pred cCCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccC
Q 016224 190 LGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP 265 (393)
Q Consensus 190 ~~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~ 265 (393)
+...+.|+.. -...+++..-...-+|......... ......+.+++|..| +|+.|-.+|+|.+-+-..... ..
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek--~~ 168 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK--VK 168 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc--eE
Confidence 7778888763 4556666666667788876654432 233567889999888 999999999999885443211 22
Q ss_pred ceeecCceeeEEEEEEcC-------CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEE
Q 016224 266 AASLKGHSLAVVSLVVGA-------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK 336 (393)
Q Consensus 266 ~~~~~~~~~~v~~l~~~~-------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~ 336 (393)
+....+...+|.+++|++ +.+++.....++.++.+. |+.+..-+.-.-.-.|+.+. |.+++.|+.|+.++
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence 333345778899999963 368888888888888875 45444322222223445444 88999999999999
Q ss_pred EEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 337 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+|.- ++-.+..+. ..+..+..+...|+++ +++.|+.||+|.-|++..
T Consensus 248 ~fTR-~GvrLGTvg--~~D~WIWtV~~~PNsQ---~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 248 LFTR-DGVRLGTVG--EQDSWIWTVQAKPNSQ---YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEee-cCeEEeecc--ccceeEEEEEEccCCc---eEEEEEccCeeehhhhHH
Confidence 9953 344443333 3556789999888777 899999999999998753
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=1e-16 Score=134.43 Aligned_cols=208 Identities=17% Similarity=0.241 Sum_probs=164.4
Q ss_pred eEEEEECCCCc--------EEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCce-----
Q 016224 130 FLHSWTVGDGF--------KLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINLGGEV----- 194 (393)
Q Consensus 130 ~i~vwd~~~~~--------~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~----- 194 (393)
.+.||.+.... +++..|. .+-+.|.|+.|.|++..|++-. |..|.+|+++++.. +..+......
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 46799987542 2333443 4567999999999999998876 88999999998765 4444333221
Q ss_pred ---EEEE--eCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc
Q 016224 195 ---GCMI--SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE 264 (393)
Q Consensus 195 ---~~~~--~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~ 264 (393)
..+. .++..+++..++++..||+++.... ....|...|..+.|+|+ +|++++.||.|++||.+..+ .
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~ 249 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---F 249 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---c
Confidence 1122 3788899999999999999987766 45678899999999998 89999999999999999875 7
Q ss_pred CceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCc-----------------------------ceeeEeccC
Q 016224 265 PAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETL-----------------------------QCIQTLTEH 312 (393)
Q Consensus 265 ~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~-----------------------------~~~~~~~~~ 312 (393)
++..+.+|.-.|.++.+++ .++++|+.|..|.+|....- -.+.++..|
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 8889999999999999974 47999999999999964321 124577889
Q ss_pred ccceEEEEEc---CCEEEEEeCCCcEEEEEcC
Q 016224 313 TSVVMSLLCW---DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 313 ~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~ 341 (393)
...|.+++|+ +=.+++-+.||.+.|=.+.
T Consensus 330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999999999 3378899999999886553
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.5e-17 Score=137.55 Aligned_cols=246 Identities=14% Similarity=0.200 Sum_probs=170.2
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-e--EEEEeCCCEEEEE-cCCeEEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-V--GCMISEGPWIFIG-VTNFVKAWN 216 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~-~~~~i~v~d 216 (393)
++..++. |.. -.|+.|++.|.+||+|..||.|.|||+.+...-+.+..+.. + .++.++|+.|+++ .|..|.+||
T Consensus 16 el~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 16 ELTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred hhceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 3444554 333 78899999999999999999999999999876666665533 2 4455788888765 888999999
Q ss_pred CCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE---EEEEcCCEEEEec
Q 016224 217 TQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV---SLVVGANKLYSGS 290 (393)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~---~l~~~~~~l~sg~ 290 (393)
+..+..+.......+|....|+|. .+++.-.+..-.+.++.......-+.. -.+....+. .+.-.|+++++|.
T Consensus 94 l~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d-~d~dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 94 LLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD-DDGDLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred ccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC-CccccccccccccccCCCCEEEEec
Confidence 999998877778889999999986 444444444455555554321111100 011111111 1233488999999
Q ss_pred CCCcEEEeeCCCcceeeEeccCc-cceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce----EEEEeecC-----CccE
Q 016224 291 MDNSIRVWNLETLQCIQTLTEHT-SVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL----EVTYTHNE-----EHGV 358 (393)
Q Consensus 291 ~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~-----~~~v 358 (393)
..|.+.++|..+.+++..++... ..|..+.++ +++|+.-+.|..||.|+++.--.. +....|+- ...-
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 99999999999999999998766 677788777 889999999999999998632111 11111111 1123
Q ss_pred EEEEeeeCCCCCcEEEEEeC-CCeEEEEeCCceee
Q 016224 359 LALCGMPDSEGKPVLLCSCN-DNSVRFYDLPSVII 392 (393)
Q Consensus 359 ~~~~~~~~~~~~~~l~s~s~-dg~I~iwd~~s~~l 392 (393)
..++|+.++. |++.++. -..++||+-..|.|
T Consensus 253 k~ccfs~dge---Yv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 253 KKCCFSGDGE---YVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred hheeecCCcc---EEEeccccceeEEEEecCCcce
Confidence 3566766544 6666554 57799999988865
No 164
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=8.1e-17 Score=135.14 Aligned_cols=240 Identities=13% Similarity=0.189 Sum_probs=176.1
Q ss_pred eeecceEEeeEecCcE-----EEecCCCeEEEEECCCC---cEEEEEe-----cCCcCCEEEEEecC-CCCEEEEEeCCC
Q 016224 107 VIKTDILCRNWVQGNC-----MYGEKCKFLHSWTVGDG---FKLLTQL-----EGHQKVVSGITLPS-GSDKLYSGSKDE 172 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~~-----~~g~~dg~i~vwd~~~~---~~~~~~l-----~~h~~~I~~i~~s~-~~~~l~s~s~dg 172 (393)
.|.-+++-+.|.++.. +.++.+..+++|.+... .++...| ..+..++++..|+. +-++|.++|-|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 5667899999998863 35888889999998742 1222222 34678999999976 678999999999
Q ss_pred cEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG 249 (393)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg 249 (393)
+..|||++++..-. -..++..|..+|..++|... .|++.+.||
T Consensus 174 TCTiWdie~~~~~~----------------------------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 174 TCTIWDIETGVSGT----------------------------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADG 219 (364)
T ss_pred eEEEEEEeeccccc----------------------------------eeeEEEecCcceeEEEeccCccceEEEecCCC
Confidence 99999999872200 01156789999999999874 999999999
Q ss_pred cEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCC-CcEEEeeCCC-cceeeEeccCccceEEEEEc--
Q 016224 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMD-NSIRVWNLET-LQCIQTLTEHTSVVMSLLCW-- 322 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~d-g~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~-- 322 (393)
+|++||++..... ..+.+-.....+...++|+ ++++|+-..| ..|.|.|++. ..++.+++.|.+.|+.++|.
T Consensus 220 SvRmFDLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh 298 (364)
T KOG0290|consen 220 SVRMFDLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH 298 (364)
T ss_pred cEEEEEecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC
Confidence 9999999986432 2222222225567788886 5677776554 5799999986 56789999999999999998
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224 323 -DQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (393)
Q Consensus 323 -~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i 384 (393)
...|++++.|.++.|||+.+... ...+........|..+.|++..++ .|+.+.. ..+.+
T Consensus 299 S~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D--wiai~~~-kklei 361 (364)
T KOG0290|consen 299 SSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD--WIAICFG-KKLEI 361 (364)
T ss_pred CCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC--EEEEEec-CeeeE
Confidence 56899999999999999975433 111222234456899999987665 5666643 44544
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-15 Score=124.48 Aligned_cols=265 Identities=13% Similarity=0.200 Sum_probs=183.9
Q ss_pred eEEeeEecCc--EEEecCCCeEEEEECCC---------CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224 112 ILCRNWVQGN--CMYGEKCKFLHSWTVGD---------GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 112 i~c~~~~~~~--~~~g~~dg~i~vwd~~~---------~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~ 180 (393)
|..-+|++.. ++.|..+|.|.+..+.+ +...+...++|..+|..++|. ..+|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 3344555442 55799999999998752 334566679999999999998 44677766 5999999876
Q ss_pred CCeE------EEEEecC--------CceEEEE---eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEE-eCC-
Q 016224 181 SGQC------AGVINLG--------GEVGCMI---SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAV-GND- 240 (393)
Q Consensus 181 ~~~~------~~~~~~~--------~~~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~-~~~- 240 (393)
+... +.....+ .++..+. ..+.+++++.|+.++-||+++++.. .+.+|.+.|.++.- +.+
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 4322 1111111 1222332 4688889999999999999999988 89999999999988 333
Q ss_pred EEEEEeCCCcEEEEEeccCCcc-----ccCceeecCc-eeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224 241 LLFAGTQDGAILAWKFNVTTNC-----FEPAASLKGH-SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS 314 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~-----~~~~~~~~~~-~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 314 (393)
.+++|++||++++||.++.+.. ++....+..| ...|.+++.+.+.|++|+ ...+.+|.++..++...|. -..
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa 247 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPA 247 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe-ccc
Confidence 9999999999999999987432 1111112223 345788999999998886 4679999999998888876 456
Q ss_pred ceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 315 VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 315 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
.+..+.|..+.+++++....|.-|.+. + .+...... .....+...+.... -++|-.++....+.|+.
T Consensus 248 ~v~~v~F~~d~vl~~G~g~~v~~~~l~-G-vl~a~ip~-~s~~c~s~s~~~~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 248 RVHLVDFVDDCVLIGGEGNHVQSYTLN-G-VLQANIPV-ESTACYSASWQTSP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred ceeEeeeecceEEEeccccceeeeeec-c-EEEEeccC-CccceeeecccCCc--eEEEEecccceeeeeee
Confidence 778889999999999999999999874 2 22222211 11223444333221 23566667777777653
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=5.1e-17 Score=149.33 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=95.3
Q ss_pred EEEEEEc---CCEEEEecCCCcEEEeeCCC-------cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCC
Q 016224 276 VVSLVVG---ANKLYSGSMDNSIRVWNLET-------LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATD 342 (393)
Q Consensus 276 v~~l~~~---~~~l~sg~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~ 342 (393)
|+.+.|+ ..+|++++.||.|++|.+.. .++...+..|...|+++.|+ .+.|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 4566665 45799999999999999864 34567788999999999999 57999999999999999999
Q ss_pred CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
......+.+|... +..++|+|++. .+++.+.||+|++|+.++.+
T Consensus 710 ~~~~~~l~gHtdq--If~~AWSpdGr---~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQ--IFGIAWSPDGR---RIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhheeccCcCc--eeEEEECCCCc---ceeeeecCceEEEeCCCCCC
Confidence 8887888887765 99999999877 89999999999999987653
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3e-16 Score=139.38 Aligned_cols=236 Identities=17% Similarity=0.247 Sum_probs=171.0
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEEEEEecCC-c--eEEEEeCCC-EEEEE-cCCeEEEEECCCCce
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVINLGG-E--VGCMISEGP-WIFIG-VTNFVKAWNTQTNTD 222 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~-~--~~~~~~~~~-~l~~~-~~~~i~v~d~~~~~~ 222 (393)
.+.|++|.|+|....|++++.|++++||.++.. ..++.+.... + ...+.++|. .++++ ....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 478999999999999999999999999998643 3444444432 2 244556777 55554 666999999999887
Q ss_pred eeec---CCC-CcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCc
Q 016224 223 LSLS---GPV-GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS 294 (393)
Q Consensus 223 ~~~~---~~~-~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~ 294 (393)
..+. ++. ..+....++++ +|+..+..|.|.+....++ +.+..++ -.+.|..+.|+ +..|++.+.+|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~----eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK----ELITSFK-IEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh----hhhheee-eccEEeeEEEecCCcEEEEEcCCce
Confidence 6443 332 34566667776 9999999999999987776 5555554 35667777775 668888889999
Q ss_pred EEEeeCCCcceeeEeccCccc-eEEEE--EcCCEEEEEeCCCcEEEEEcCCCc---ceEEE-EeecCCccEEEEEeeeCC
Q 016224 295 IRVWNLETLQCIQTLTEHTSV-VMSLL--CWDQFLLSCSLDKTIKVWFATDSG---NLEVT-YTHNEEHGVLALCGMPDS 367 (393)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~-v~~l~--~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~ 367 (393)
|.+||+++..+++.+....+. -++++ ..+.|||+|+..|.|.|||..+.. ....+ ...+-...|..+.|+++.
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 999999999999998743322 24444 448899999999999999965321 11111 112223457888888877
Q ss_pred CCCcEEEEEeC--CCeEEEEeCCceeeC
Q 016224 368 EGKPVLLCSCN--DNSVRFYDLPSVIIC 393 (393)
Q Consensus 368 ~~~~~l~s~s~--dg~I~iwd~~s~~lc 393 (393)
+ +|+.+|. +..+++-.+++..++
T Consensus 448 q---iLAiaS~~~knalrLVHvPS~TVF 472 (514)
T KOG2055|consen 448 Q---ILAIASRVKKNALRLVHVPSCTVF 472 (514)
T ss_pred h---hhhhhhhccccceEEEeccceeee
Confidence 6 7777664 788999999988764
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-16 Score=142.69 Aligned_cols=204 Identities=14% Similarity=0.193 Sum_probs=163.3
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeC
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 200 (393)
.+++|+..+.|+|||+... .+.+.+++|++.|+++.+.-...|||+++..|.|.|..+.++.....|..+
T Consensus 93 y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~--------- 162 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID--------- 162 (673)
T ss_pred eeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC---------
Confidence 5667999999999999965 677889999999999999999999999999999999999988766555422
Q ss_pred CCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE
Q 016224 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277 (393)
Q Consensus 201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~ 277 (393)
....|.-+.|++. +|.+++.+|.|.+||+..... .......|..+..
T Consensus 163 ---------------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 163 ---------------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCR 212 (673)
T ss_pred ---------------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcC
Confidence 1234557778776 889999999999999988742 2344567888888
Q ss_pred EEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEe
Q 016224 278 SLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYT 351 (393)
Q Consensus 278 ~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~ 351 (393)
.++|+ +.+|++.+.|..|.+||++..+....+. -..+..+++|. |.+|+.|...|.|..||++..+. +..+..
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 88876 3479999999999999999877776665 34577888887 77999999999999999986654 344444
Q ss_pred ecCCccEEEEEeeeCC
Q 016224 352 HNEEHGVLALCGMPDS 367 (393)
Q Consensus 352 ~~~~~~v~~~~~~~~~ 367 (393)
|.. .|.+++|-+..
T Consensus 292 h~~--sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDA--SVTRVAFQPSP 305 (673)
T ss_pred ccc--ceeEEEeeecc
Confidence 444 48888887753
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.1e-17 Score=147.57 Aligned_cols=243 Identities=17% Similarity=0.280 Sum_probs=168.6
Q ss_pred cceEEeeEe--cCcEEEecCCCeEEEEECC-------CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224 110 TDILCRNWV--QGNCMYGEKCKFLHSWTVG-------DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 110 ~~i~c~~~~--~~~~~~g~~dg~i~vwd~~-------~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~ 180 (393)
.-|..++|. ...+++++.|++|.+|+++ ...+++.+|.+|.++|.|++++++++.+++|+.||+|+.|++.
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 344444554 4467889999999999993 2257889999999999999999999999999999999999875
Q ss_pred CCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224 181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF 256 (393)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~ 256 (393)
...-- +|......+ .+.+|.+.|+.+++++. .|++++.||+++.|+.
T Consensus 375 ~n~dp-----------------------------~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 375 PNQDP-----------------------------DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred CCCCc-----------------------------ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 22100 111111111 56799999999999876 9999999999999998
Q ss_pred ccCCccccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEeccCc-------cceEEEEEc--CC
Q 016224 257 NVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHT-------SVVMSLLCW--DQ 324 (393)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~~--~~ 324 (393)
.....+ .......| ..-.++.+-.. +.++...-+.-.++|+...+.+..+.... ..+..+... ..
T Consensus 426 ~~~~~~--~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 426 TEESPC--TFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred CCcCcc--ccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 766431 01111122 22234444332 33333334444445555555444443211 223444444 56
Q ss_pred EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 325 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+.+++..|+.|+++|..++..+.....|... +.++++.|.+. +|++++.|+.|++|.+..
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s--vtslai~~ng~---~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKILHSMVAHKDS--VTSLAIDPNGP---YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eeEecccCCceecccccccccchheeeccce--ecceeecCCCc---eEEeecCCceeehhhccc
Confidence 8999999999999999988887777766654 77788777666 999999999999999854
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=1e-15 Score=128.48 Aligned_cols=256 Identities=17% Similarity=0.193 Sum_probs=184.5
Q ss_pred CCCeEEEEECCCC--cEEEEEecCCcCCEEEEEecC-CCCEEEEEeCC-------CcEEEEECCCCeE---------EEE
Q 016224 127 KCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKD-------ETVRVWDCASGQC---------AGV 187 (393)
Q Consensus 127 ~dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~d-------g~v~iwd~~~~~~---------~~~ 187 (393)
.|+.|++.+++.+ .-.-..|..|.+.|..|+-+| +.+.|+|+-.+ -.+.||.+.+... +..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4677888776643 123346677889999999999 55666776542 2467998865422 222
Q ss_pred Ee--cCCceEEE--EeCCCEEEEEcCCeEEEEECCCCcee--e-----ecCCCCcEEEEEEeCC---EEEEEeCCCcEEE
Q 016224 188 IN--LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL--S-----LSGPVGQVYAMAVGND---LLFAGTQDGAILA 253 (393)
Q Consensus 188 ~~--~~~~~~~~--~~~~~~l~~~~~~~i~v~d~~~~~~~--~-----~~~~~~~v~~l~~~~~---~l~~~~~dg~I~v 253 (393)
+. ..+.+.++ .+++..+++-.++.|.+|++.....+ . ...+....++-+|+|. .-+....|+++..
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 22 11233443 47888888888999999999987763 1 1224556777888884 4455567999999
Q ss_pred EEeccCCccccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc---CCEE
Q 016224 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW---DQFL 326 (393)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~---~~~l 326 (393)
||+++... ....-..|...|..+.++++ +|++++.||.|+|||.+. ..+++++.+|...|.++.|. .++|
T Consensus 198 ~D~RT~~~---~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 198 WDLRTMKK---NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEccchhh---hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99997642 23334568888999999976 599999999999999985 66799999999999999998 6789
Q ss_pred EEEeCCCcEEEEEcCCCc-----------------------------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224 327 LSCSLDKTIKVWFATDSG-----------------------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s 377 (393)
++++.|..|.+|....-. .++.+ ..++..|.+++|+...+ -+|++-+
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty--dehEDSVY~~aWSsadP--WiFASLS 350 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY--DEHEDSVYALAWSSADP--WIFASLS 350 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc--cccccceEEEeeccCCC--eeEEEec
Confidence 999999999999654211 01111 22345699999986644 3788899
Q ss_pred CCCeEEEEeCCc
Q 016224 378 NDNSVRFYDLPS 389 (393)
Q Consensus 378 ~dg~I~iwd~~s 389 (393)
.||.+.|=.++.
T Consensus 351 YDGRviIs~V~r 362 (370)
T KOG1007|consen 351 YDGRVIISSVPR 362 (370)
T ss_pred cCceEEeecCCh
Confidence 999999877654
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=133.20 Aligned_cols=235 Identities=16% Similarity=0.162 Sum_probs=162.3
Q ss_pred CEEEEEecCCCCEEEEEeCCCcEEEEECCCCe------------EEEEEe--cCCce--EEEE-------eCCCEEEE-E
Q 016224 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ------------CAGVIN--LGGEV--GCMI-------SEGPWIFI-G 207 (393)
Q Consensus 152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~------------~~~~~~--~~~~~--~~~~-------~~~~~l~~-~ 207 (393)
-...+.|+|||..|++-+.|..+.+|++.... ...++. .+..+ .++. ++..++++ +
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567899999999999999999999974210 111111 12222 1121 34445554 4
Q ss_pred cCCeEEEEECCCCcee---eecCCCCc---EEEEEEeCC-EEEEEeCCCcEEEEEec-cCCccccCcee----ecCceee
Q 016224 208 VTNFVKAWNTQTNTDL---SLSGPVGQ---VYAMAVGND-LLFAGTQDGAILAWKFN-VTTNCFEPAAS----LKGHSLA 275 (393)
Q Consensus 208 ~~~~i~v~d~~~~~~~---~~~~~~~~---v~~l~~~~~-~l~~~~~dg~I~vwd~~-~~~~~~~~~~~----~~~~~~~ 275 (393)
.+.-|++||.-+++.. ....|... ..+++|+|| .-+.++....|++||+. .+... ....+ -.+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c-~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC-PVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC-cchhhhhcccccccce
Confidence 7889999999999876 33344444 458999999 44444578899999994 33321 11111 1234666
Q ss_pred EEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC-CCcEEEEEcCCCcce-EE
Q 016224 276 VVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNL-EV 348 (393)
Q Consensus 276 v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~-~~ 348 (393)
+.++++++ ..++.|+....+-|+.-..+.++..+-+|.+.|+.+.|. |+.|++|+. |-.|..||++..+.+ ..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 78888874 479999999999999988999999999999999999998 778888876 779999999876543 33
Q ss_pred EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 349 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+..|... .-..+.|--+ +.+++|++|+.||.|++||+..
T Consensus 290 L~rhv~~-TNQRI~FDld-~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 290 LERHVGD-TNQRILFDLD-PKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhccC-ccceEEEecC-CCCceeeccCCCccEEEEecCC
Confidence 3444331 1223334333 3344999999999999999986
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.4e-17 Score=159.91 Aligned_cols=229 Identities=22% Similarity=0.296 Sum_probs=165.3
Q ss_pred cCCCeEEEEECC--CCc---EEEEEecCCcCCEEEEEecCCCCE----EEEEeCCCcEEEEECCCCeEEEEEecCCceEE
Q 016224 126 EKCKFLHSWTVG--DGF---KLLTQLEGHQKVVSGITLPSGSDK----LYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196 (393)
Q Consensus 126 ~~dg~i~vwd~~--~~~---~~~~~l~~h~~~I~~i~~s~~~~~----l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 196 (393)
+.+.++.||.+. +.. +.+..++ -...-+.++|.+.+.. ||.|..||.|.+||...-..-.
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~---------- 104 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA---------- 104 (1049)
T ss_pred ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc----------
Confidence 345556666544 321 2333333 3456788999876654 8889999999999976520000
Q ss_pred EEeCCCEEEEEcCCeEEEEECCCCce-eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224 197 MISEGPWIFIGVTNFVKAWNTQTNTD-LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH 272 (393)
Q Consensus 197 ~~~~~~~l~~~~~~~i~v~d~~~~~~-~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~ 272 (393)
.... .....|.+.|..+.|++. +|++|+.||.|.|||+......+.+- -...
T Consensus 105 ----------------------~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~~~~ 160 (1049)
T KOG0307|consen 105 ----------------------SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--SQAP 160 (1049)
T ss_pred ----------------------chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--CCCC
Confidence 0011 156789999999999875 99999999999999999864332222 2235
Q ss_pred eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCcc--ceEEEEEcCC---EEEEEeCCC---cEEEEEcC
Q 016224 273 SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS--VVMSLLCWDQ---FLLSCSLDK---TIKVWFAT 341 (393)
Q Consensus 273 ~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~---~l~s~s~dg---~i~iwd~~ 341 (393)
...|.+++|+. ..|++++.+|.+.|||++..+.+-.+..+.. .+..+.|+++ .|++++.|. .|.+||++
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 67899999984 4699999999999999999888888876655 3578889843 566666654 49999998
Q ss_pred CCcce-EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceeeC
Q 016224 342 DSGNL-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC 393 (393)
Q Consensus 342 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~lc 393 (393)
..... ..+..|. .+++++.|.+.+ ..+|++++.|+.|.+|+.+++++.
T Consensus 241 ~assP~k~~~~H~--~GilslsWc~~D--~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 241 FASSPLKILEGHQ--RGILSLSWCPQD--PRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred ccCCchhhhcccc--cceeeeccCCCC--chhhhcccCCCCeeEecCCCceEe
Confidence 65544 3333444 459999998764 349999999999999999998863
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=9.6e-14 Score=130.72 Aligned_cols=278 Identities=27% Similarity=0.436 Sum_probs=201.4
Q ss_pred cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEe-cCCCC-EEEEEeC-CCcEEEEE
Q 016224 105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITL-PSGSD-KLYSGSK-DETVRVWD 178 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~-s~~~~-~l~s~s~-dg~v~iwd 178 (393)
...+...+.+..+.... +..++.|+.+.+|+...+...+..+..+. ..+..+.+ ++++. +++..+. |+.+.+|+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 44566788888888654 34577899999999988743677777644 47888888 78777 5555444 99999999
Q ss_pred CCC-CeEEEEEecCC-ceE--EEEeCCCEEEEEc--CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEE-eCC
Q 016224 179 CAS-GQCAGVINLGG-EVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAG-TQD 248 (393)
Q Consensus 179 ~~~-~~~~~~~~~~~-~~~--~~~~~~~~l~~~~--~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~-~~d 248 (393)
... ......+..+. .+. .+.+++..++.+. ++.+++|+....... .+..|...|.+++++++ .++++ +.|
T Consensus 141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred ecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 987 56666555543 333 3345676666663 899999999986655 66779999999999987 24444 899
Q ss_pred CcEEEEEeccCCccccCce-eecCceee-EEEEEEcCCEEEEecCCCcEEEeeCCCcce-eeEeccCccceEEEEEcC--
Q 016224 249 GAILAWKFNVTTNCFEPAA-SLKGHSLA-VVSLVVGANKLYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSLLCWD-- 323 (393)
Q Consensus 249 g~I~vwd~~~~~~~~~~~~-~~~~~~~~-v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~-- 323 (393)
+.|.+||.... .... .+..|... +..+..++..+++++.|+.+++||++.... +..+..|...+.++.+.+
T Consensus 221 ~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 296 (466)
T COG2319 221 GTIRLWDLSTG----KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296 (466)
T ss_pred CcEEEEECCCC----cEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCC
Confidence 99999987743 3333 46666665 344445566888999999999999987664 555567888999998884
Q ss_pred CEEEEEeCCCcEEEEEcCCCcceEEEE--eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 324 QFLLSCSLDKTIKVWFATDSGNLEVTY--THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 324 ~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
..+++++.|+.+.+||........... .+.. .+..+.+ ... ...++..+..|+.+.+|++...
T Consensus 297 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSF-SPD-GSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred CEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEE-CCC-CCEEEEeecCCCcEEeeecCCC
Confidence 677889999899999887776655554 3332 4777777 422 2223444468899999998765
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=2.2e-16 Score=134.61 Aligned_cols=242 Identities=17% Similarity=0.291 Sum_probs=168.3
Q ss_pred ecCCcCCEEEEEecC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEEecCCc----eEEEE----e-CCCEEEE-E
Q 016224 146 LEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQ---CAGVINLGGE----VGCMI----S-EGPWIFI-G 207 (393)
Q Consensus 146 l~~h~~~I~~i~~s~-----~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~----~~~~~----~-~~~~l~~-~ 207 (393)
...|+.+|..++|.+ +-+.+++++. ..+.+|.+...- .++.+..... ..+.. . .+.++++ |
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 356889999999974 2345666665 478899876543 2333322211 12211 1 2455655 5
Q ss_pred cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-
Q 016224 208 VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG- 282 (393)
Q Consensus 208 ~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~- 282 (393)
.-|.|++.|+.+++.. .+.+|...|..+.+.|+ ++++++.|.+|++|++++... .....-..+|...|.++.|+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-v~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-VAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-EEEecccccccCcEEEEEEcC
Confidence 7889999999999887 88999999999999987 999999999999999998732 12334457899999999997
Q ss_pred -CCEEEEecCCCcEEEeeCCCcce------e-------------------e---EeccCccceEEEEEcCCEEEEEeCCC
Q 016224 283 -ANKLYSGSMDNSIRVWNLETLQC------I-------------------Q---TLTEHTSVVMSLLCWDQFLLSCSLDK 333 (393)
Q Consensus 283 -~~~l~sg~~dg~i~iwd~~~~~~------~-------------------~---~~~~~~~~v~~l~~~~~~l~s~s~dg 333 (393)
+++|++++.|.+|++|++...+. . - +-..|...|-|+.|.++++++-|-++
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscen 271 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCEN 271 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCc
Confidence 67999999999999999973211 0 0 12347777888888899999999999
Q ss_pred cEEEEEcCC-CcceEE---------EE-eec-CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 334 TIKVWFATD-SGNLEV---------TY-THN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 334 ~i~iwd~~~-~~~~~~---------~~-~~~-~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
.|..|..-+ .+.+.. +. ... ....+.-+.|..+. -+++|+.|...|.|.+|||+..
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCC
Confidence 999998721 111111 11 111 11123334443332 2238999999999999999764
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=1.6e-13 Score=129.16 Aligned_cols=276 Identities=27% Similarity=0.442 Sum_probs=199.1
Q ss_pred cccceeecceEEeeEecCc--EEEecC-CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEE
Q 016224 103 NNRAVIKTDILCRNWVQGN--CMYGEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWD 178 (393)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~--~~~g~~-dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd 178 (393)
.....|...|.++.|+++. ++.++. ++.+++|++.++ ..+..+.+|...|.+++|+|++. ++++++.|+.|++||
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd 227 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence 3344566788899998876 445654 999999999986 78888999999999999999998 555669999999999
Q ss_pred CCCCeEEE-EEecCCce--EEEEeCCCEEE-EEcCCeEEEEECCCCce-e-eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224 179 CASGQCAG-VINLGGEV--GCMISEGPWIF-IGVTNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND--LLFAGTQDGA 250 (393)
Q Consensus 179 ~~~~~~~~-~~~~~~~~--~~~~~~~~~l~-~~~~~~i~v~d~~~~~~-~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~ 250 (393)
...+.... .+..+... ..+.+++.+++ ++.++.+++|+...... . ....|...+.++.+.|+ .+++++.|+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred CCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc
Confidence 98777777 45444332 24445665665 45889999999987664 3 44578899999999984 6777888899
Q ss_pred EEEEEeccCCccccCceee--cCceeeEEEEEEcC--CEEEEe-cCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--
Q 016224 251 ILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVGA--NKLYSG-SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-- 323 (393)
Q Consensus 251 I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~~--~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-- 323 (393)
+.+||+..... .... ..|...+..+.+.. ..++.+ ..|+.+.+|++.............. +..+.+..
T Consensus 308 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 382 (466)
T COG2319 308 VRLWDLETGKL----LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDG 382 (466)
T ss_pred EEEEEcCCCce----EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECCCC
Confidence 99998876632 2222 35666677777732 355555 6889999999988773333333322 56665554
Q ss_pred CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 324 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
..+..+..++.+.+|+.............. ..+....+.++.. .+++++.++.+++|++.+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHT--SRVTSLDFSPDGK---SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CEEEEecCCCceEEEecccCeeeeeccCCC--CcEEEEEECCCCc---EEEEecCCCcEEEEeccC
Confidence 223337889999999998766554444332 3466677766555 888889999999999876
No 176
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.5e-15 Score=138.85 Aligned_cols=229 Identities=18% Similarity=0.279 Sum_probs=166.9
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC--EEEEEeC----------
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--KLYSGSK---------- 170 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~--~l~s~s~---------- 170 (393)
...|.+.|.|+...+. -+++|+.||+|+||.+.++ .++++++ -.+.|.||+|+|.+. .||++-.
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 4567888888877655 4667999999999999999 7887776 456888888888654 3333221
Q ss_pred ----------------------CCcEEEEECC------CCeEE--------EEEe-------------------------
Q 016224 171 ----------------------DETVRVWDCA------SGQCA--------GVIN------------------------- 189 (393)
Q Consensus 171 ----------------------dg~v~iwd~~------~~~~~--------~~~~------------------------- 189 (393)
|+.+..|.-. .+-++ ..+.
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1223344321 01011 1111
Q ss_pred -----------cCCceEE--EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeC--CEEEEEeCCCcEEE
Q 016224 190 -----------LGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN--DLLFAGTQDGAILA 253 (393)
Q Consensus 190 -----------~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~--~~l~~~~~dg~I~v 253 (393)
..+.+.+ +.+...+++++....|++||+..+..+ .+......|..|++++ +.|+.++.|+.+..
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence 0011111 224566788889999999999887666 5666677899999998 59999999999999
Q ss_pred EEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCC------C---cceeeEeccCccc----eEE
Q 016224 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE------T---LQCIQTLTEHTSV----VMS 318 (393)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~------~---~~~~~~~~~~~~~----v~~ 318 (393)
+|+...+ ++.+.+.-|...+.++++.+. +|++|+.||++.|+--. . --++..+.+|... |..
T Consensus 634 fDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd 710 (733)
T KOG0650|consen 634 FDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD 710 (733)
T ss_pred EEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence 9998876 667788889999999999987 59999999999998532 1 2346778888776 888
Q ss_pred EEEcC--CEEEEEeCCCcEEEE
Q 016224 319 LLCWD--QFLLSCSLDKTIKVW 338 (393)
Q Consensus 319 l~~~~--~~l~s~s~dg~i~iw 338 (393)
..|++ -+|++++.||+|++|
T Consensus 711 ~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 711 TIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccCCCceEEecCCCceEEee
Confidence 88985 489999999999998
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.1e-14 Score=127.07 Aligned_cols=279 Identities=15% Similarity=0.149 Sum_probs=194.0
Q ss_pred cccceeecceEEeeEecCcE--EEecCCCeEEEEECCCC-----cEEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcE
Q 016224 103 NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDG-----FKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETV 174 (393)
Q Consensus 103 ~~~~~~~~~i~c~~~~~~~~--~~g~~dg~i~vwd~~~~-----~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v 174 (393)
+....|.+-|..++|+.+.. ++|+.|..+++|+++.. .+++.... .|.+.|.|++|....++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 44556778899999997754 46889999999998732 14444433 356999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCc---eEEE--Ee-CCCEEEEEcCCeEEEEECCCCc----eeeecCCCCcEEEEEEeCC---E
Q 016224 175 RVWDCASGQCAGVINLGGE---VGCM--IS-EGPWIFIGVTNFVKAWNTQTNT----DLSLSGPVGQVYAMAVGND---L 241 (393)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~---~~~~--~~-~~~~l~~~~~~~i~v~d~~~~~----~~~~~~~~~~v~~l~~~~~---~ 241 (393)
.+.|+++.+.+..+..... +-.+ .+ ++.++++..++.|.+||.+... .+.+.........+.|+|. +
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999999988877653 3222 23 4555566788999999998765 2234445566778889886 8
Q ss_pred EEEEeCCCcEEEEEeccCCccccCc---eeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcce-eeEeccCc--
Q 016224 242 LFAGTQDGAILAWKFNVTTNCFEPA---ASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQC-IQTLTEHT-- 313 (393)
Q Consensus 242 l~~~~~dg~I~vwd~~~~~~~~~~~---~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~-- 313 (393)
|++.+..+-+-+||.+......-.. ..+......-+..-| +|+.|++--....-.+||+.+.++ +..+. |.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~ 288 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPN 288 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCC
Confidence 9999999999999998765321111 111111222244445 467777766666677888877444 33333 22
Q ss_pred -----cceEEEEEcCC-EEEEEeCCCcEEEEEcCCCc-----------------------ceEEEEeecCCccEEEEEee
Q 016224 314 -----SVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSG-----------------------NLEVTYTHNEEHGVLALCGM 364 (393)
Q Consensus 314 -----~~v~~l~~~~~-~l~s~s~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~ 364 (393)
..+.+++|.++ -+++|+.+-.|++|.+.... .+.++.+|.. -+..+.|+
T Consensus 289 GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS--v~NQVRF~ 366 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS--VPNQVRFS 366 (609)
T ss_pred cceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc--cccceeec
Confidence 24567777755 58899999999999875211 1223333333 36678887
Q ss_pred eCCCCCcEEEEEeCCCeEEEEeC
Q 016224 365 PDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 365 ~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
|... +|++.+-...++||.-
T Consensus 367 ~H~~---~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 367 QHNN---LLVSSGVENSFKLWSD 386 (609)
T ss_pred CCcc---eEeccchhhheecccc
Confidence 7665 8888889999999963
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1e-16 Score=151.44 Aligned_cols=269 Identities=15% Similarity=0.225 Sum_probs=201.2
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
...|.+.|+|..|... .+++|+.|..++||..+++ .++..+.||++.|+.++.+.+..+++++|.|..|++|.+..+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 3457789999999754 5778999999999999998 899999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee-e----ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-S----LSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255 (393)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~----~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd 255 (393)
..+..+..+......+....+-.++.||++++||.+-.... . .......+.++.|..+ .+++++.|+.-..|.
T Consensus 265 ~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred chHHHHhccccceeeeccCccccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 99888876654444333333446678899999998822111 1 1112344556666554 788899998887776
Q ss_pred eccCCccccCceeecCceeeEEEEEE---cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEE
Q 016224 256 FNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSC 329 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~ 329 (393)
+.... .+...+.-+.. ...+.+++-.+-.+.+|++.+|++.+.+.+|...+..+.++ +....++
T Consensus 345 ~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 345 FEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred hhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 54321 11111111111 12467777788899999999999999999999999999887 4567899
Q ss_pred eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 330 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+.||...|||+-.+..+...... ...+..-.|++++. .++....-|.++|.....
T Consensus 415 g~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgt---s~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGT---SIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred cCCCceEeeecccCCcceeeecc--cceeeccccCCCCc---eEecCCCCCceEEeccCC
Confidence 99999999999888777666533 34477778877765 677777778888876543
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=3.2e-13 Score=124.33 Aligned_cols=260 Identities=16% Similarity=0.251 Sum_probs=158.7
Q ss_pred EecCCCeEEEEECCC-C-cEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECC-CCeE--EEEEecCCce--E
Q 016224 124 YGEKCKFLHSWTVGD-G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCA-SGQC--AGVINLGGEV--G 195 (393)
Q Consensus 124 ~g~~dg~i~vwd~~~-~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~-~~~~--~~~~~~~~~~--~ 195 (393)
+...++.|++|++.+ + .+.+..+. +......++++|++++|++++ .++.|.+|++. +++. +......... .
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 356789999999964 3 23555554 446677899999999987765 47899999997 3432 3333333222 3
Q ss_pred EEEeCCCEEEEE--cCCeEEEEECCCCc----eeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEeccCCcccc--
Q 016224 196 CMISEGPWIFIG--VTNFVKAWNTQTNT----DLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFE-- 264 (393)
Q Consensus 196 ~~~~~~~~l~~~--~~~~i~v~d~~~~~----~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~vwd~~~~~~~~~-- 264 (393)
.+.+++++++++ .++.|.+|++.+.. .............++++|+ ++ ++...++.|.+||+........
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 344688888876 47899999997432 1222223345677888887 44 5556679999999976321100
Q ss_pred -CceeecCceeeEEEEEE--cCCEEEEecC-CCcEEEeeCCC--c--ceeeEeccCc------cceEEEEEc--CCEEEE
Q 016224 265 -PAASLKGHSLAVVSLVV--GANKLYSGSM-DNSIRVWNLET--L--QCIQTLTEHT------SVVMSLLCW--DQFLLS 328 (393)
Q Consensus 265 -~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg~i~iwd~~~--~--~~~~~~~~~~------~~v~~l~~~--~~~l~s 328 (393)
....... ......+.+ ++++++++.. ++.|.+||+.. + +.+.++.... .....+.++ +++|++
T Consensus 166 ~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 166 PAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 0011111 112233444 5668777765 89999999973 2 3344443221 122345555 678887
Q ss_pred Ee-CCCcEEEEEcCCCcceEEEEee-cCCccEEEEEeeeCCCCCcEEEEEeC-CCeEEEEeCC
Q 016224 329 CS-LDKTIKVWFATDSGNLEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLP 388 (393)
Q Consensus 329 ~s-~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~s~s~-dg~I~iwd~~ 388 (393)
+. .++.|.+|++........+..+ ........+.++|++. +|+++.. +++|.+|++.
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~---~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK---YLIAAGQKSHHISVYEID 304 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC---EEEEEEccCCcEEEEEEc
Confidence 75 4789999999654432222222 1112344677777644 6776654 8999999874
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=2.5e-14 Score=125.40 Aligned_cols=256 Identities=15% Similarity=0.229 Sum_probs=164.8
Q ss_pred eecceEEeeEecC---cEEEecCCCeEEEEECCCC--------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224 108 IKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG--------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (393)
Q Consensus 108 ~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~--------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i 176 (393)
...+++.+.|..+ .+.+|+.|..|++|-+..+ .+.+..|..|..+|+++.|+|+|++||||+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 3447888877654 4568999999999987632 2456688899999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254 (393)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw 254 (393)
|....-... .... ..-.....++ ....+.+|...|..++|+++ ++++++.|..+++|
T Consensus 92 Wk~~~~~~~---~~d~--e~~~~ke~w~----------------v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 92 WKQGDVRIF---DADT--EADLNKEKWV----------------VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred EEecCcCCc---cccc--hhhhCccceE----------------EEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence 987641100 0000 0000000000 01256679999999999998 99999999999999
Q ss_pred EeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCc-----------------------------
Q 016224 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETL----------------------------- 303 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~----------------------------- 303 (393)
|+..+ .....+.+|...+..++|++ .++++-+.|...+.+++...
T Consensus 151 Dv~~G----~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhD 226 (434)
T KOG1009|consen 151 DVHAG----QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHD 226 (434)
T ss_pred Eeccc----eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeec
Confidence 99987 44555666666666666652 34555444443333332211
Q ss_pred ----------------------------------------------ceeeEeccCccceEEEEEcC--------------
Q 016224 304 ----------------------------------------------QCIQTLTEHTSVVMSLLCWD-------------- 323 (393)
Q Consensus 304 ----------------------------------------------~~~~~~~~~~~~v~~l~~~~-------------- 323 (393)
+++..+.....++..+.+++
T Consensus 227 eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~ 306 (434)
T KOG1009|consen 227 ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL 306 (434)
T ss_pred CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence 11111112222233333321
Q ss_pred -----CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 324 -----QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 324 -----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+++++......|.|||..+...+...... +-..++.++|++++. +|+..|.||...+--++..+|
T Consensus 307 ~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~---~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 307 FVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGS---VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cccccceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCc---EEEEeccCCceEEEEEcchhc
Confidence 23334444568999998776666554432 234589999988766 999999999887766665543
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=2.9e-14 Score=121.53 Aligned_cols=221 Identities=18% Similarity=0.201 Sum_probs=169.9
Q ss_pred ecceEEeeEecC--cEEEecCCCeEEEEECCCC--cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC-CCe
Q 016224 109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQ 183 (393)
Q Consensus 109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~-~~~ 183 (393)
..+|+|.+|+.+ .++++.....|.||..... ++..++++.|...|+.|+|+|..+.|++++.|..-.||... .++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 359999999987 4556778889999987643 57899999999999999999999999999999999999984 333
Q ss_pred EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCc
Q 016224 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN 261 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~ 261 (393)
-..+ +.+..+....+++.|+|+ .|++|+....|.||-++....
T Consensus 90 Wkpt-----------------------------------lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd 134 (361)
T KOG1523|consen 90 WKPT-----------------------------------LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND 134 (361)
T ss_pred eccc-----------------------------------eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence 2221 244567788999999997 999999999999998887654
Q ss_pred cccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCC------------------CcceeeEeccCccceEEEEE
Q 016224 262 CFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE------------------TLQCIQTLTEHTSVVMSLLC 321 (393)
Q Consensus 262 ~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~ 321 (393)
-+...+.-+.+...|.+++|.++ +|++|+.|+..+||..- -|+++.++....+.+..+.|
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 44444445567888999999855 78999999999999642 13455556566778999999
Q ss_pred c--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeC
Q 016224 322 W--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPD 366 (393)
Q Consensus 322 ~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 366 (393)
+ |..|+-.+.|..+.+-|.....+ +..... ...+.+++.|...
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~--~~lP~ls~~~ise 260 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT--AQLPLLSVSWISE 260 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCchhccchhh--ccCCceeeEeecC
Confidence 8 88999999999999999866542 222222 1245666666543
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.2e-14 Score=115.64 Aligned_cols=182 Identities=16% Similarity=0.265 Sum_probs=141.6
Q ss_pred ceEEeeEe--cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224 111 DILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (393)
Q Consensus 111 ~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (393)
+|..+-.. .+.+++++.|+.++-||+++| +..+++++|++.|.++.--.....++||+.||+++|||+.+++++..+
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence 55555444 457888889999999999999 999999999999999998555567999999999999999999999888
Q ss_pred ecCC-----------ceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEec
Q 016224 189 NLGG-----------EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257 (393)
Q Consensus 189 ~~~~-----------~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~ 257 (393)
..-. -+.++.-+..++++|....+.+|+++..+..........+..+.|..+.++++++...|.-|.+.
T Consensus 195 e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec
Confidence 6432 23556678899999999999999999999998888889999999999999999999999999876
Q ss_pred cCCccccCceeecCceeeEEEEEEc--CC-EEEEecCCCcEEEe
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVG--AN-KLYSGSMDNSIRVW 298 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~iw 298 (393)
.. +..........+++.+++ +- +|-.++....+.|+
T Consensus 275 Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 275 GV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cE-----EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 53 222233333344555554 22 34445555555554
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=4.8e-14 Score=138.80 Aligned_cols=255 Identities=19% Similarity=0.242 Sum_probs=171.0
Q ss_pred EECCCCcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCC-------eEEEEEe-cCCceE--EEEeCCC
Q 016224 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG-------QCAGVIN-LGGEVG--CMISEGP 202 (393)
Q Consensus 134 wd~~~~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~-------~~~~~~~-~~~~~~--~~~~~~~ 202 (393)
|+. .| .++..+..|+..|..++.+++. .+++|||.||+|++||+.+- +...++. ....+. .+...+.
T Consensus 1034 W~p-~G-~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RG-ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cc-eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 554 34 7899999999999999997655 99999999999999998642 2233333 233333 3345566
Q ss_pred EEEE-EcCCeEEEEECCCCc--ee------ee-cCCCCcEEEEE-EeC---C-EEEEEeCCCcEEEEEeccCCccccCce
Q 016224 203 WIFI-GVTNFVKAWNTQTNT--DL------SL-SGPVGQVYAMA-VGN---D-LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (393)
Q Consensus 203 ~l~~-~~~~~i~v~d~~~~~--~~------~~-~~~~~~v~~l~-~~~---~-~l~~~~~dg~I~vwd~~~~~~~~~~~~ 267 (393)
.+++ +.||.|++.++.... .. .. ....+.+.+|. +.. . .++.++.-+.|..||++.....+....
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 5555 589999999887622 11 11 11233444443 322 2 788899999999999998754433332
Q ss_pred eecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEc---C--CEEEEEe--CCCcEEE
Q 016224 268 SLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW---D--QFLLSCS--LDKTIKV 337 (393)
Q Consensus 268 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~---~--~~l~s~s--~dg~i~i 337 (393)
. ...+.|++++.+ ++.+++|+..|.+.+||++-+.++..+. .+..++..+... + ...++++ ..+.|.+
T Consensus 1192 ~--~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 Q--LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred C--ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 2 345678888876 5689999999999999999998888876 355677776665 3 4555544 4678999
Q ss_pred EEcCCCcceEEEEeecCC--------c------cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 338 WFATDSGNLEVTYTHNEE--------H------GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 338 wd~~~~~~~~~~~~~~~~--------~------~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
|++.++.....+...... . ......+......+.++++|+.|..|+.||...-+.
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 999888665555443110 0 011111111123445899999999999999876544
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.7e-14 Score=121.38 Aligned_cols=244 Identities=15% Similarity=0.218 Sum_probs=168.5
Q ss_pred ceEEeeEe----cC-cEEEec----CCCeEEEEECC--CCcEEEEE-ecCCcCCEEEEEecCCC-----CEEEEEeCCCc
Q 016224 111 DILCRNWV----QG-NCMYGE----KCKFLHSWTVG--DGFKLLTQ-LEGHQKVVSGITLPSGS-----DKLYSGSKDET 173 (393)
Q Consensus 111 ~i~c~~~~----~~-~~~~g~----~dg~i~vwd~~--~~~~~~~~-l~~h~~~I~~i~~s~~~-----~~l~s~s~dg~ 173 (393)
+++.+.|+ .. .+..|+ ..+.|.|-.+. ++ +.+.. --.|.-+++.+-|.|+. ++|||++ ..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-ceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 66777777 11 233444 34566665544 33 22221 13589999999999876 3566654 38
Q ss_pred EEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEe---CCEEEEEeCCCc
Q 016224 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG---NDLLFAGTQDGA 250 (393)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~---~~~l~~~~~dg~ 250 (393)
+++|.+...+.....+. . +.+. +...+..+++++.|+ |+++.+.+-|-+
T Consensus 123 LRlWri~~ee~~~~~~~------~-------------------L~~~---kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQS------V-------------------LNNN---KNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred EEEEeccCcCCceehhh------h-------------------hccC---cccccCCcccccccccCCcceeEeecccCe
Confidence 99999874321111100 0 0000 123456788888886 459999999999
Q ss_pred EEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEe---ccCccceEEEEEc--
Q 016224 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTL---TEHTSVVMSLLCW-- 322 (393)
Q Consensus 251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~-- 322 (393)
..|||++.+.. ......+..|...|..++|.. +.|++.+.||.||+||++..+.-..+ .....+...++|+
T Consensus 175 CTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 175 CTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999998621 234567788999999999974 47999999999999999976543222 2235567888887
Q ss_pred -CCEEEEEeCC-CcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 323 -DQFLLSCSLD-KTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 323 -~~~l~s~s~d-g~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
.+++++-..| ..|.|.|++.... +..+..|.. .|.+++|.|.+.. .|+|++.|..+-+||+.+.
T Consensus 254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a--~VNgIaWaPhS~~--hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA--SVNGIAWAPHSSS--HICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CchHHhhhhcCCceEEEEEecCCCcceehhhcCcc--cccceEecCCCCc--eeeecCCcceEEEEecccc
Confidence 5688887766 4699999987654 344455544 5999999998654 7999999999999999764
No 185
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1.2e-13 Score=117.75 Aligned_cols=230 Identities=13% Similarity=0.190 Sum_probs=169.0
Q ss_pred CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCceEEEEeCCCE-EEEE-cC------CeEEEEECCCC
Q 016224 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMISEGPW-IFIG-VT------NFVKAWNTQTN 220 (393)
Q Consensus 152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-l~~~-~~------~~i~v~d~~~~ 220 (393)
...+++|+.|...++.|..+| .+||+++--+.....+ .+-.+.-+....++ .++| .. +.|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 344589999988888877665 7999987533221111 11112222333333 3344 22 47999997777
Q ss_pred ceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC--ceeeEEEEEEcCC--EEEE-ecCCCcE
Q 016224 221 TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVSLVVGAN--KLYS-GSMDNSI 295 (393)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~--~l~s-g~~dg~i 295 (393)
+.+.......+|.++.+.++.+++.- .+.|+||.+.... +.+..+.. .....+++....+ +||. |-.-|.|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~---k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNP---KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCCh---hheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 77777778889999999999777764 6789999988543 33333322 2334566665432 4444 4467999
Q ss_pred EEeeCCCcce--eeEeccCccceEEEEEc--CCEEEEEeCCCc-EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224 296 RVWNLETLQC--IQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (393)
Q Consensus 296 ~iwd~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 370 (393)
+|-|+...+. ...+.+|...|.+++.. |..+||+|..|+ |||||..++..+.++........+.+++|+|+..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-- 239 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-- 239 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc--
Confidence 9999986554 47788999999999988 889999999998 8999999999999998888888899999999887
Q ss_pred cEEEEEeCCCeEEEEeCCc
Q 016224 371 PVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 371 ~~l~s~s~dg~I~iwd~~s 389 (393)
+|+++|+.|+|+|+.+..
T Consensus 240 -~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 -WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -EEEEEcCCCeEEEEEeec
Confidence 999999999999999865
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1.9e-12 Score=112.59 Aligned_cols=224 Identities=14% Similarity=0.146 Sum_probs=169.1
Q ss_pred ceEEeeEecCcEE--EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEE
Q 016224 111 DILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAG 186 (393)
Q Consensus 111 ~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~ 186 (393)
.+.+..|..+..+ .|+.||. +++..+.-.+. .........|.-+-|+. .++|..+.+. .+++.+...+..+.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~-~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC-FSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCchHHh-hcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence 4555567766433 4777775 56766543231 11122234455556654 4676666654 49999999999999
Q ss_pred EEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee-ee---cCCCCcEEEEEEeCC--EEEEE--eCCCcEEEEEecc
Q 016224 187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SL---SGPVGQVYAMAVGND--LLFAG--TQDGAILAWKFNV 258 (393)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~---~~~~~~v~~l~~~~~--~l~~~--~~dg~I~vwd~~~ 258 (393)
.+..+.++.++--+.+.|++.....|+|||+++.+.+ ++ ..+...+.++.+++. +|+.- ...|.|.+||..+
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred EEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 9999999999988888888887777999999999887 22 235556777777765 66653 3578999999987
Q ss_pred CCccccCceeecCceeeEEEEEEc--CCEEEEecCCCc-EEEeeCCCcceeeEeccCc--cceEEEEEc--CCEEEEEeC
Q 016224 259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLTEHT--SVVMSLLCW--DQFLLSCSL 331 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~--~~v~~l~~~--~~~l~s~s~ 331 (393)
- ++...+..|.+.+.+++++ |.+|||++..|+ ||||.+.+|+.+.+|+-.. ..|.+++|+ .++|++.|.
T Consensus 163 l----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 163 L----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred c----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 6 6678888999999999986 779999999885 6899999999999997443 456889998 679999999
Q ss_pred CCcEEEEEcCC
Q 016224 332 DKTIKVWFATD 342 (393)
Q Consensus 332 dg~i~iwd~~~ 342 (393)
.++|+||.+.+
T Consensus 239 TeTVHiFKL~~ 249 (391)
T KOG2110|consen 239 TETVHIFKLEK 249 (391)
T ss_pred CCeEEEEEecc
Confidence 99999998864
No 187
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.4e-15 Score=135.37 Aligned_cols=223 Identities=13% Similarity=0.165 Sum_probs=179.4
Q ss_pred CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE--EEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (393)
Q Consensus 151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~ 228 (393)
-.-..+.++.+|++|+.|+.-|.|-.+|..+++....+...+.+.. ++....+++++..+.++|||-..-+...+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~- 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR- 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh-
Confidence 3446788999999999999999999999999999999888776644 4568888999999999999977655544444
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcc
Q 016224 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQ 304 (393)
Q Consensus 229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~ 304 (393)
...|..+.|-|. +|++++..|.+..-|+..+ +++..+..-.+.+..+.-++ ..+-+|...|+|.+|.....+
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG----KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechh----hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 457888999998 8889999999999999998 55666666666677777664 468889999999999999999
Q ss_pred eeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeE
Q 016224 305 CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382 (393)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I 382 (393)
++..+-.|.++|.+|+++ |.|++|.+.|..++|||++....+..... .. +...++++..+ +|+.+ ....|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~--~a~~ls~Sqkg----lLA~~-~G~~v 356 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PH--PASNLSLSQKG----LLALS-YGDHV 356 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CC--Ccccccccccc----ceeee-cCCee
Confidence 999999999999999998 88999999999999999998876666555 22 34445544322 34444 44578
Q ss_pred EEEe
Q 016224 383 RFYD 386 (393)
Q Consensus 383 ~iwd 386 (393)
.||.
T Consensus 357 ~iw~ 360 (545)
T KOG1272|consen 357 QIWK 360 (545)
T ss_pred eeeh
Confidence 8985
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.64 E-value=5.9e-15 Score=128.84 Aligned_cols=162 Identities=19% Similarity=0.290 Sum_probs=133.5
Q ss_pred eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc---ccCceeecCceeeEEEEEEcC---CEEEEecCCCc
Q 016224 224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNS 294 (393)
Q Consensus 224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~ 294 (393)
...+|..+|..++|+|- .+|+|++|.+|.||++-..... .+++..+.+|...|-.+.|.+ +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 56789999999999874 9999999999999998764322 366788999999999999984 58999999999
Q ss_pred EEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcE
Q 016224 295 IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372 (393)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 372 (393)
|.+||+.+++.+-++. |...|.++.|+ |.+|++.+.|.+|+|||.++++.+..-..|....... ..|..++. +
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R-aifl~~g~---i 230 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR-AIFLASGK---I 230 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce-eEEeccCc---e
Confidence 9999999999999988 99999999998 8899999999999999999998887776666554333 44554433 5
Q ss_pred EEEEe---CCCeEEEEeCCce
Q 016224 373 LLCSC---NDNSVRFYDLPSV 390 (393)
Q Consensus 373 l~s~s---~dg~I~iwd~~s~ 390 (393)
+.||- ++.++-+||....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eeeccccccccceeccCcccc
Confidence 55543 4788999987654
No 189
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.3e-12 Score=111.53 Aligned_cols=230 Identities=13% Similarity=0.175 Sum_probs=166.1
Q ss_pred ceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CC------CcEEEEECCCC
Q 016224 111 DILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KD------ETVRVWDCASG 182 (393)
Q Consensus 111 ~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~d------g~v~iwd~~~~ 182 (393)
....+.|..| .+++...|.-.+||+.+-- +.....+.+...+.-+..---.++|+-.+ .+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~-ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPF-KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCch-hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 3445788766 5677667777899997642 33222333333322222222345665433 32 48999998888
Q ss_pred eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCC--EEE-EEeCCCcEEEEE
Q 016224 183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWK 255 (393)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~--~l~-~~~~dg~I~vwd 255 (393)
+++.++....++..+.-....|++-..+.|.+|....+..+ ..........+++-..+ +|+ -|-.-|.|.|-|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 99999999999999999999999999999999998854322 22222333555554444 333 356779999999
Q ss_pred eccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCc-EEEeeCCCcceeeEecc--CccceEEEEEc--CCEEEE
Q 016224 256 FNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFLLS 328 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l~s 328 (393)
+..... .....+..|...|.+++.+ |.++||++..|+ |||||.++++++.+++- ....|.+++|+ ..+|++
T Consensus 166 L~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 166 LASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred hhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 987642 2346778899999999886 789999999986 78999999999999973 45678999999 568999
Q ss_pred EeCCCcEEEEEcCCC
Q 016224 329 CSLDKTIKVWFATDS 343 (393)
Q Consensus 329 ~s~dg~i~iwd~~~~ 343 (393)
+|..|+|.||.++..
T Consensus 244 sSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCeEEEEEeecC
Confidence 999999999998753
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.7e-13 Score=128.72 Aligned_cols=282 Identities=14% Similarity=0.226 Sum_probs=191.0
Q ss_pred ccceeecceEEeeEecCc--EEEecCCCeEEEEECCC---CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224 104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD---GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (393)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~---~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd 178 (393)
...+|...++|.++++.. +++|..||.|.+|.--. .....+.+.=|...|.+++|+++|.+|+||+..|.+.+|.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 344566668999999875 44688999999996332 2244567788999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCceEEE--EeCCCEEEE-EcCCeEEEEECCCCcee-eec-----------CCCCcEEEEEEeCC--E
Q 016224 179 CASGQCAGVINLGGEVGCM--ISEGPWIFI-GVTNFVKAWNTQTNTDL-SLS-----------GPVGQVYAMAVGND--L 241 (393)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~-----------~~~~~v~~l~~~~~--~ 241 (393)
+++++....-..+..+..+ .+++...+. -.|+.|.+....+.... .+. ...+-.+.++++|. .
T Consensus 280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 9999855445566665443 356665554 58999999887655433 111 12445667778774 8
Q ss_pred EEEEeCCCcEEEEEeccCCccccCceeec-------CceeeEEEEEEc--CCEEEEec--------CC--CcEEEeeCCC
Q 016224 242 LFAGTQDGAILAWKFNVTTNCFEPAASLK-------GHSLAVVSLVVG--ANKLYSGS--------MD--NSIRVWNLET 302 (393)
Q Consensus 242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~--~~~l~sg~--------~d--g~i~iwd~~~ 302 (393)
++..+..|.|.+||+.+....++...... .+...+++++.+ +++++|.- .| -.+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 88889999999999988765433322211 123344444432 66777653 23 3577886543
Q ss_pred cc----eeeEe-ccCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcce------E--EEEeecCCccEEEEEeee
Q 016224 303 LQ----CIQTL-TEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNL------E--VTYTHNEEHGVLALCGMP 365 (393)
Q Consensus 303 ~~----~~~~~-~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~------~--~~~~~~~~~~v~~~~~~~ 365 (393)
.. +...+ ..|...+...++. ....++++.||.++||-+...+.. . ....+.+..++.+.+|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 32 22222 3577666666555 237899999999999988432211 1 111222445688888887
Q ss_pred CCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 366 DSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 366 ~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
|+. +++.+.|++|.+||..+
T Consensus 520 dGs----lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 520 DGS----LLAVSFDDTITIWDYDT 539 (792)
T ss_pred CCc----EEEEecCCEEEEecCCC
Confidence 765 66777889999999987
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-14 Score=124.03 Aligned_cols=180 Identities=17% Similarity=0.284 Sum_probs=127.8
Q ss_pred cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEeccCCccccCceeecCce-eeEEEEEE
Q 016224 208 VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS-LAVVSLVV 281 (393)
Q Consensus 208 ~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~ 281 (393)
..+.|++||..++..+ .+.++...+..+.|.. +.+.+++.||+|++||++.... ........+. .+..+++.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGTPFICLDL 125 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCCcceEeec
Confidence 4444555555444444 4566677777777744 4999999999999999998754 3334444454 45566766
Q ss_pred c--CCEEEEec----CCCcEEEeeCCCcce-eeEe-ccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEE-E
Q 016224 282 G--ANKLYSGS----MDNSIRVWNLETLQC-IQTL-TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEV-T 349 (393)
Q Consensus 282 ~--~~~l~sg~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~-~ 349 (393)
+ ++.+++|+ .+-.|.+||+|..+. +..+ ..|...|+++.|. +++|++||.||-|.|||++....-.. +
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 4 55677765 367899999998765 5554 5799999999998 57999999999999999975532211 1
Q ss_pred EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 350 ~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
...+....|..+.|+...- +.|.+-+..++..+|+++.+.
T Consensus 206 ~viN~~sSI~~igw~~~~y--krI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKY--KRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred HhhcccceeeeeeeecCCc--ceEEEEEccCceeEEEccCCC
Confidence 2233445578888876542 258888999999999998764
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.4e-14 Score=137.89 Aligned_cols=232 Identities=18% Similarity=0.233 Sum_probs=159.6
Q ss_pred CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc----eEE--EEe--CCC-EEEEEcCCeEEEEECCCC--
Q 016224 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE----VGC--MIS--EGP-WIFIGVTNFVKAWNTQTN-- 220 (393)
Q Consensus 152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~----~~~--~~~--~~~-~l~~~~~~~i~v~d~~~~-- 220 (393)
.-..+.|+|-...++++...-.|+|||.+.+++...|..+.. +.. ++. +.. +++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 455678888888999998778999999999999888876543 222 222 333 445569999999975332
Q ss_pred ---cee-ee---cC----CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CC
Q 016224 221 ---TDL-SL---SG----PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---AN 284 (393)
Q Consensus 221 ---~~~-~~---~~----~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~ 284 (393)
+.+ .. .+ ..+.-.-+.|... .|++++.-..|+|||...... ......+....+++++.+ ++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~---~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV---VADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee---EeecccCCCccceeecccccCCc
Confidence 222 11 11 1111123344433 777777789999999987632 111222345567777764 78
Q ss_pred EEEEecCCCcEEEeeCCCc---ceeeEeccCccc--eEEEEEc--C-CEEEEEeCCCcEEEEEcCCCcce--EEEEeecC
Q 016224 285 KLYSGSMDNSIRVWNLETL---QCIQTLTEHTSV--VMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNL--EVTYTHNE 354 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~--v~~l~~~--~-~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~ 354 (393)
.+++|..||.|++||.+.. ..+..++.|... |..+.+. | ..|++|+.||.|++||++..... ..+..+-.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 9999999999999999863 357778888887 8888887 2 26999999999999999874221 11222221
Q ss_pred -CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 355 -EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 355 -~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
....+++..++..+ ++++|+. +.|+||++..-
T Consensus 1303 yGs~lTal~VH~hap---iiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAP---IIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred cCccceeeeeccCCC---eeeecCc-ceEEEEecChh
Confidence 22377787777776 8999988 99999998643
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6.8e-13 Score=126.96 Aligned_cols=269 Identities=21% Similarity=0.263 Sum_probs=192.7
Q ss_pred EecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC---CEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 016224 117 WVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS---DKLYSGSKDETVRVWDCASGQCAGVINLGG 192 (393)
Q Consensus 117 ~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 192 (393)
|+++ ..+++..+..|.||.+.++ ++++.+.+|..+++.+.+.|.. .++++++.||+|++||...+..++++....
T Consensus 24 fSnD~k~l~~~~~~~V~VyS~~Tg-~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~ 102 (792)
T KOG1963|consen 24 FSNDAKFLFLCTGNFVKVYSTATG-ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL 102 (792)
T ss_pred cccCCcEEEEeeCCEEEEEecchH-hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence 4544 5667888899999999999 8889999999999999997754 478899999999999999998888775433
Q ss_pred ceEEEE-------------------------------------------------------------eCCCEEEEEcCCe
Q 016224 193 EVGCMI-------------------------------------------------------------SEGPWIFIGVTNF 211 (393)
Q Consensus 193 ~~~~~~-------------------------------------------------------------~~~~~l~~~~~~~ 211 (393)
++..+. ..+.+.....+..
T Consensus 103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~ 182 (792)
T KOG1963|consen 103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCK 182 (792)
T ss_pred ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeee
Confidence 221110 0122222334456
Q ss_pred EEEEECCCCcee-----eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--
Q 016224 212 VKAWNTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-- 282 (393)
Q Consensus 212 i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-- 282 (393)
+.+|+....... .-..|...+++.+++|+ +++++..||.|.+|.--...........+.-|...|.+++|+
T Consensus 183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD 262 (792)
T ss_pred EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence 677777664422 12345566788888887 999999999999996544222223445667788889888885
Q ss_pred CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecC------
Q 016224 283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE------ 354 (393)
Q Consensus 283 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------ 354 (393)
|.+|++|+..+.+.+|.+.+++ .+-+.--.++|..+.++ +.+.+....|.+|.+....+......+.+...
T Consensus 263 G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 263 GAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK 341 (792)
T ss_pred CceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence 7799999999999999999988 44455567788888888 56888888899999998765443333332211
Q ss_pred ---CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 355 ---EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 355 ---~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
..-.+.+++.|... .++-.+..|.|.+||+-+-
T Consensus 342 ~~~~~l~t~~~idpr~~---~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDPRTN---SLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred ccccccceeEEEcCCCC---ceeecCCCceEEEEecccc
Confidence 12244556655333 5777778999999998654
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=1.7e-13 Score=130.30 Aligned_cols=231 Identities=13% Similarity=0.151 Sum_probs=161.5
Q ss_pred eecceEEeeEec---CcEEEecCCCeEEEEECCCCcEE-E----EEecCCcCCEEEEEecCCC--CEEEEEeCCCcEEEE
Q 016224 108 IKTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKL-L----TQLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVW 177 (393)
Q Consensus 108 ~~~~i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~-~----~~l~~h~~~I~~i~~s~~~--~~l~s~s~dg~v~iw 177 (393)
-..+|+|+.|.+ ..++.|..+|.|.+||+..+... . .....|..+++.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 345899999874 45677999999999999865221 2 2234689999999995543 559999999999999
Q ss_pred ECCCCeEE-EEE-----e-------cCCceEEEE---eC-CCEEEEEcCCeEEEEE---CCCCc------eeeecCCCCc
Q 016224 178 DCASGQCA-GVI-----N-------LGGEVGCMI---SE-GPWIFIGVTNFVKAWN---TQTNT------DLSLSGPVGQ 231 (393)
Q Consensus 178 d~~~~~~~-~~~-----~-------~~~~~~~~~---~~-~~~l~~~~~~~i~v~d---~~~~~------~~~~~~~~~~ 231 (393)
+++.-... ... . ......++. .+ ..+++...+|.|..-+ ..... ......|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 87653321 111 1 001112221 13 3344445777776633 33333 2255678899
Q ss_pred EEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCC--c
Q 016224 232 VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLET--L 303 (393)
Q Consensus 232 v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~--~ 303 (393)
|+++.++|- .|++++ |-+|++|...... .++..+..+...+++++|++. .|+++..||.|.+||+.. .
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA---SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCC---CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 999998875 555555 9999999876322 667777778888999999854 699999999999999964 4
Q ss_pred ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224 304 QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD 342 (393)
Q Consensus 304 ~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~ 342 (393)
.++.+...+....+.+.++ ++.|++|...|++.+|++..
T Consensus 477 ~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 477 EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5566665565555666666 67899999999999999853
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=3.7e-13 Score=132.70 Aligned_cols=233 Identities=18% Similarity=0.222 Sum_probs=158.8
Q ss_pred eeecceEEeeEecCc---EEEecCCCeEEEEECCCC------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224 107 VIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw 177 (393)
+|+..+..++.+.+. +++|+.||+|++|+...- .+...++......+.++.+.+.++.+|.++.||.|++.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 455566667766543 568999999999997631 23334455567889999999999999999999999999
Q ss_pred ECCCCe-------EEEEEe--cCCceEEEE----eCCC-EEEEE-cCCeEEEEECCCCcee---eecCCCCcEEEEEEeC
Q 016224 178 DCASGQ-------CAGVIN--LGGEVGCMI----SEGP-WIFIG-VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGN 239 (393)
Q Consensus 178 d~~~~~-------~~~~~~--~~~~~~~~~----~~~~-~l~~~-~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~ 239 (393)
+++... +.+... ..+.+..+. .... .++.+ .-+.|..||++..... +.....+.|++++.+|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence 987621 111111 122333332 1233 44444 6679999999987755 4455678899999998
Q ss_pred C--EEEEEeCCCcEEEEEeccCCccccCceee-cCceeeEEEEEEc---C--CE-EEEec-CCCcEEEeeCCCcceeeEe
Q 016224 240 D--LLFAGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG---A--NK-LYSGS-MDNSIRVWNLETLQCIQTL 309 (393)
Q Consensus 240 ~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~---~--~~-l~sg~-~dg~i~iwd~~~~~~~~~~ 309 (393)
. .+++|+..|.+.+||++-... +... ..+...+..+..+ + .. +.+++ ..+.|.+|++.++.+..++
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~----i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVP----ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCce----eecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 7 999999999999999998742 3322 2344566666554 2 33 34444 5789999999998776666
Q ss_pred ccC-c----------------cc---eEEEEEc-CCEEEEEeCCCcEEEEEcCCC
Q 016224 310 TEH-T----------------SV---VMSLLCW-DQFLLSCSLDKTIKVWFATDS 343 (393)
Q Consensus 310 ~~~-~----------------~~---v~~l~~~-~~~l~s~s~dg~i~iwd~~~~ 343 (393)
... . .. +.+.... +.++++|+.|..|+.||....
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 432 1 11 1111122 568999999999999998643
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=130.18 Aligned_cols=165 Identities=18% Similarity=0.263 Sum_probs=127.6
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCC
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~ 220 (393)
.+.++|.||++.|.+++|+.+|.+|++||.|-.+.|||.-..+.+..+.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~------------------------------- 89 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS------------------------------- 89 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------
Confidence 3446789999999999999999999999999999999998777665543
Q ss_pred ceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccCCc------cccCceeecCceeeEEEEEEc---CCEEE
Q 016224 221 TDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTN------CFEPAASLKGHSLAVVSLVVG---ANKLY 287 (393)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~~~------~~~~~~~~~~~~~~v~~l~~~---~~~l~ 287 (393)
.+|...|.++.|-|. ++++|..|..|+++|+...+. ..+.......|...|..|+.. ++.+.
T Consensus 90 -----TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw 164 (758)
T KOG1310|consen 90 -----TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW 164 (758)
T ss_pred -----cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE
Confidence 578899999999775 899999999999999985321 123445566788888777764 47899
Q ss_pred EecCCCcEEEeeCCCcce-eeE---------eccCccceEEEEEc---CCEEEEEeCCCcEEEEEcC
Q 016224 288 SGSMDNSIRVWNLETLQC-IQT---------LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 288 sg~~dg~i~iwd~~~~~~-~~~---------~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~ 341 (393)
++++||+|+-+|++.... -.. +...--...++..+ +.+|++|+.|-..++||.+
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 999999999999986221 111 11111233566666 5699999999999999943
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.6e-13 Score=129.09 Aligned_cols=228 Identities=12% Similarity=0.005 Sum_probs=152.3
Q ss_pred CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEE--EecCCceEEEEeCCC
Q 016224 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGV--INLGGEVGCMISEGP 202 (393)
Q Consensus 128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~ 202 (393)
+..|.+||.+.. . .+.+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... +........+.++++
T Consensus 183 ~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 578999998654 3 45677788899999999999999988754 3699999988764333 322233455668888
Q ss_pred EEEEE--cCCe--EEEEECCCCceeeecCCCCcEEEEEEeCC--E-EEEEeCCCcEEEEEeccCCccccCceeecCceee
Q 016224 203 WIFIG--VTNF--VKAWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275 (393)
Q Consensus 203 ~l~~~--~~~~--i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 275 (393)
.|+.+ .++. |.+||+.++....+..+...+....|+|+ . ++++..++...+|++........ .+ .+...
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~---~l-~~~~~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS---LV-GGRGY 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE---Ee-cCCCC
Confidence 77764 4564 55667777777777777778889999998 4 44555678899998865432111 11 22222
Q ss_pred EEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC--CCcceEEEEe
Q 016224 276 VVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT--DSGNLEVTYT 351 (393)
Q Consensus 276 v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~ 351 (393)
...++.++++|+..+.++ +.+||+.+++.......+ ....+.|+ +++|+.++.++.+.+|++. ++.....+..
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 233455677888777665 556999888754332222 22344555 7799999999988888763 4555555544
Q ss_pred ecCCccEEEEEeeeC
Q 016224 352 HNEEHGVLALCGMPD 366 (393)
Q Consensus 352 ~~~~~~v~~~~~~~~ 366 (393)
+.. .+...+|+|.
T Consensus 414 ~~g--~~~~p~wsp~ 426 (429)
T PRK01742 414 SDG--QVKFPAWSPY 426 (429)
T ss_pred CCC--CCCCcccCCC
Confidence 433 3666777764
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=119.96 Aligned_cols=241 Identities=13% Similarity=0.147 Sum_probs=168.2
Q ss_pred EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC------CeEEEEEecC--CceEEEE--eCCCEEEEE-cCCeE
Q 016224 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS------GQCAGVINLG--GEVGCMI--SEGPWIFIG-VTNFV 212 (393)
Q Consensus 144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~~~--~~~~~~~--~~~~~l~~~-~~~~i 212 (393)
+.+.+|.+.|.+|.|+.++++|++|+.|..+++|+++. .+.+.....+ ..+.++. ..+.++++| .+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45678999999999999999999999999999999864 3445444433 3344444 366777776 78899
Q ss_pred EEEECCCCceeeecCCCC---cEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CC
Q 016224 213 KAWNTQTNTDLSLSGPVG---QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---AN 284 (393)
Q Consensus 213 ~v~d~~~~~~~~~~~~~~---~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~ 284 (393)
.+.|+++.+.+....|.. .|+.+..+|. .|++.+.++.|.+||.+.......+.. +........++.|+ +.
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceeeeecCCCce
Confidence 999999999886555554 8999999885 999999999999999998754323222 22233445566666 45
Q ss_pred EEEEecCCCcEEEeeCCCcce-eeE------eccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC
Q 016224 285 KLYSGSMDNSIRVWNLETLQC-IQT------LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 355 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~~~~~-~~~------~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 355 (393)
+|++.+..+-+-+||.+..+. +.. +......-.++.|+ |..|++--....-.+||+.+..+......|...
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 899999999999999985332 111 11112223556666 666666655556677888665544433333331
Q ss_pred -----ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 356 -----HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 356 -----~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
..+-+++|.-+- .+++|+.+-.|++|.++.
T Consensus 289 GY~N~~T~KS~~F~~D~----~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDY----TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cceeeeeeeeeeeecce----eeeccCcccceEEEecCC
Confidence 234556665443 499999999999999874
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=6e-14 Score=127.07 Aligned_cols=202 Identities=12% Similarity=0.154 Sum_probs=152.0
Q ss_pred CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe
Q 016224 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199 (393)
Q Consensus 120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 199 (393)
+.++..+.||.+.+.+- .+ +..+.+..|.++|.+-.|+|||.-|+|++.||.|++|.-. |-...
T Consensus 76 d~~~i~s~DGkf~il~k-~~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRS------------- 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SA-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRS------------- 139 (737)
T ss_pred ceEEEEcCCceEEEecc-cc-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHH-------------
Confidence 45678899999999873 34 6667889999999999999999999999999999999843 21111
Q ss_pred CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (393)
Q Consensus 200 ~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v 276 (393)
.+.....+|.|++|.|+ .+++. .+.+.+=.+... ..+...+.|.+-|
T Consensus 140 ------------------------tl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n----~k~i~WkAHDGii 189 (737)
T KOG1524|consen 140 ------------------------TVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAAN----SKIIRWRAHDGLV 189 (737)
T ss_pred ------------------------HHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccc----cceeEEeccCcEE
Confidence 22345678999999887 44443 455555544443 3345678899999
Q ss_pred EEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecC
Q 016224 277 VSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354 (393)
Q Consensus 277 ~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 354 (393)
.+++|+ .+.+++|++|-..++||.. |+.+.+-..|..+|++++|.++.++..+.-.+++ + ....
T Consensus 190 L~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R------------~-~~p~ 255 (737)
T KOG1524|consen 190 LSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR------------F-SSPR 255 (737)
T ss_pred EEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeee------------e-cCCC
Confidence 999998 5689999999999999965 7788888899999999999965433333333444 1 1222
Q ss_pred CccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (393)
Q Consensus 355 ~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i 384 (393)
...+..++|++|+. .+++|+..|.|.+
T Consensus 256 ~GSifnlsWS~DGT---Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 256 VGSIFNLSWSADGT---QATCGTSTGQLIV 282 (737)
T ss_pred ccceEEEEEcCCCc---eeeccccCceEEE
Confidence 34689999999877 7999998888754
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=4.1e-15 Score=140.83 Aligned_cols=238 Identities=18% Similarity=0.306 Sum_probs=175.3
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-eEEEE--eCCCEEEEE-cCCeEEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGCMI--SEGPWIFIG-VTNFVKAWN 216 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~-~~~~i~v~d 216 (393)
+.++.|.+|..+|+|..|...|.++++|+.|..|+||..+++.++.....+.. +..+. ..+.+++++ .|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45567789999999999999999999999999999999999999988876643 33332 344455544 777999999
Q ss_pred CCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224 217 TQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN 293 (393)
Q Consensus 217 ~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg 293 (393)
+..+..+ .+.+|.+.|++++|+|-. +.+.||++++||.+-....+.+.-.-......+.++.+. +..++|++.|+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 9999988 889999999999999964 778999999999984322222211111122344455553 55799999999
Q ss_pred cEEEeeCCCcceeeEeccCccceEEEEE---cCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224 294 SIRVWNLETLQCIQTLTEHTSVVMSLLC---WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (393)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 370 (393)
.-..|.+..... +...+.-+.. ...+.+++-.+-.+.+|++.++.....+.+|.+. +..+.++|..+
T Consensus 339 ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~--~yvLd~Hpfn~-- 408 (1113)
T KOG0644|consen 339 EARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE--VYVLDVHPFNP-- 408 (1113)
T ss_pred ccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc--eeeeeecCCCc--
Confidence 998887653221 1111111111 1356777778889999999998888888888776 67777888755
Q ss_pred cEEEEEeCCCeEEEEeCCce
Q 016224 371 PVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 371 ~~l~s~s~dg~I~iwd~~s~ 390 (393)
++..+++.||...|||+-.|
T Consensus 409 ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred HhhhhccCCCceEeeecccC
Confidence 36678999999999998655
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=7.4e-14 Score=125.17 Aligned_cols=278 Identities=18% Similarity=0.182 Sum_probs=199.3
Q ss_pred ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC--CCCEEEEEeCCCcEEEEECCC
Q 016224 106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCAS 181 (393)
Q Consensus 106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~~~ 181 (393)
..|++-|.-+.|... .+++|+.|..|.+||...+...+.-..+|...|..-.|-| +.+.|++++.||.|++=.+..
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 346677777777744 4567999999999999988566666678999999888977 446899999999999987654
Q ss_pred -CeEEEE---EecCCceEE--EEe--CCCEEEEEcCCeEEEEECCCCcee----eecCCCC---cEEEEEEeCC---EEE
Q 016224 182 -GQCAGV---INLGGEVGC--MIS--EGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVG---QVYAMAVGND---LLF 243 (393)
Q Consensus 182 -~~~~~~---~~~~~~~~~--~~~--~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~---~v~~l~~~~~---~l~ 243 (393)
+.+..+ .++.+++.- +.+ ...++.+|.|+.+.-+|++..... ....+.. ....++.+|. .++
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 333322 233333332 333 455677789999999999877543 2222233 4567777765 899
Q ss_pred EEeCCCcEEEEEeccCCcc--------ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC--c--------
Q 016224 244 AGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET--L-------- 303 (393)
Q Consensus 244 ~~~~dg~I~vwd~~~~~~~--------~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~--~-------- 303 (393)
+++.|..+++||.+.-... +.+..........|+++.++ +.-|++...|-.|+++.-.. |
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence 9999999999998764321 11111122345678899886 44577777888999995432 2
Q ss_pred --ceeeE-eccCcc--ceEEEEEcC---CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224 304 --QCIQT-LTEHTS--VVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (393)
Q Consensus 304 --~~~~~-~~~~~~--~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 375 (393)
..+.. +++|.. .|..+.|.| .|+++||.-|.|.||+-.+++.+..+.+..+ -|.++.-+|..+ +||+
T Consensus 379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~P---vLAs 453 (559)
T KOG1334|consen 379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLP---VLAS 453 (559)
T ss_pred hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCc---hhhc
Confidence 22333 777754 578888885 5999999999999999988877766665544 488888888877 9999
Q ss_pred EeCCCeEEEEeCC
Q 016224 376 SCNDNSVRFYDLP 388 (393)
Q Consensus 376 ~s~dg~I~iwd~~ 388 (393)
++-|..|+||-..
T Consensus 454 SGid~DVKIWTP~ 466 (559)
T KOG1334|consen 454 SGIDHDVKIWTPL 466 (559)
T ss_pred cCCccceeeecCC
Confidence 9999999999763
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=4.7e-14 Score=125.67 Aligned_cols=256 Identities=16% Similarity=0.219 Sum_probs=194.7
Q ss_pred EEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224 113 LCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (393)
Q Consensus 113 ~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (393)
+-+.|..+ .++.|+.-|.|-.+|..++ ++..++. -...|.++.|-.+.+++|++- ...+.|||- .|..++.+.-
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhh
Confidence 44556544 5778999999999999998 7877776 456799999988888887765 458999995 4666666655
Q ss_pred CCceEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcccc
Q 016224 191 GGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE 264 (393)
Q Consensus 191 ~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~ 264 (393)
...+.. +.+..-+|+++ ..|.++.-|+.+++.+ .+....+.+..|.-+|- .+-+|...|+|.+|..... +
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk----e 284 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK----E 284 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc----c
Confidence 544433 34555555554 6679999999999988 66777788888888886 8889999999999988776 7
Q ss_pred CceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcC-
Q 016224 265 PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT- 341 (393)
Q Consensus 265 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~- 341 (393)
++..+..|.++|.+++++ |.+++|.+.|..++|||+++...+.++.. ..+...++++.+-+++.+....|.||.-.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDAL 363 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehhhh
Confidence 778888899999999997 67999999999999999999887777765 45677888888878888888899999532
Q ss_pred C--CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224 342 D--SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (393)
Q Consensus 342 ~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg 380 (393)
. +..-.....|.-...|..+.|.|..+ +|-.|-.-|
T Consensus 364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~ED---vLGIGH~~G 401 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGGPVEDLRFCPYED---VLGIGHAGG 401 (545)
T ss_pred cCCCCCCcchhhhccCcccccceeccHHH---eeeccccCC
Confidence 2 12223344455556788888888755 454444333
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.2e-13 Score=114.70 Aligned_cols=232 Identities=18% Similarity=0.225 Sum_probs=151.3
Q ss_pred cceeecceEEeeEec-CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC-----C----CEEEEEeCCC-c
Q 016224 105 RAVIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-----S----DKLYSGSKDE-T 173 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~-~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~-----~----~~l~s~s~dg-~ 173 (393)
+..+...|+.++..+ +.+.+-+.|..+.+|++..+ ..+ ..|+-.+.++-|.+. + +.++.=+... .
T Consensus 52 r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s-~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde 127 (323)
T KOG0322|consen 52 RLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYS-AFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE 127 (323)
T ss_pred hhhccceeeceeecCCcchhhcCCCceEEEEEccCc-ceE---EEeeeeccccccccceeccCCCcchhheecCCcccch
Confidence 345566888888877 56778999999999998865 222 234444555555332 1 1111111100 0
Q ss_pred EEEEECCCCeEEEEEecC-----CceEEEE---eCC--CEEEEE-cCCeEEEEECCCCcee-----------eecCCCCc
Q 016224 174 VRVWDCASGQCAGVINLG-----GEVGCMI---SEG--PWIFIG-VTNFVKAWNTQTNTDL-----------SLSGPVGQ 231 (393)
Q Consensus 174 v~iwd~~~~~~~~~~~~~-----~~~~~~~---~~~--~~l~~~-~~~~i~v~d~~~~~~~-----------~~~~~~~~ 231 (393)
+.+=|......+...... +.+.+.. .++ -++++| .++.+.+||+.++..+ ....|..+
T Consensus 128 ~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp 207 (323)
T KOG0322|consen 128 THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP 207 (323)
T ss_pred hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc
Confidence 111121111111111110 1122222 122 244566 7789999999997322 34568899
Q ss_pred EEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee--ecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceee
Q 016224 232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS--LKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ 307 (393)
Q Consensus 232 v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 307 (393)
|.++.+.+. .=++|+.+..+..|+++........... ++.....-..|-.+++.+|+++.|+.||||..++.+++.
T Consensus 208 vlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 208 VLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred ceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh
Confidence 999999865 6778888899999998876443232222 222222334566788899999999999999999999999
Q ss_pred EeccCccceEEEEEcC--CEEEEEeCCCcEEEEEc
Q 016224 308 TLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 308 ~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~ 340 (393)
.++.|.+.|++++|++ ..+++++.|++|.+|++
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999994 58999999999999986
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=5.7e-13 Score=129.59 Aligned_cols=266 Identities=18% Similarity=0.235 Sum_probs=176.8
Q ss_pred ecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEe------cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 109 KTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL------EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 109 ~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l------~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
-.+..|.++.. ..+.++..-.|.+||+..+ .++..+ ..|... ... .-.+.+++++..-+.+..=+....
T Consensus 7 ~~~l~~~~~~~-~~llag~gp~i~~yd~~s~-~li~~~~~~~~~~~H~~e--~~~-~l~~~~~v~~~~~~~v~~~~~~~~ 81 (967)
T KOG0974|consen 7 LGPLNLPQLVS-DYLLAGSGPEILVYDLSSG-CLIRHLIQSKILEVHRGE--GKV-KLLSGKIVTCAKSDEVYVKEASNQ 81 (967)
T ss_pred cccccchhhcc-ceeeecCCCceEEeeCCch-hHhhhhhhhccccccccc--ccc-eeccceEEEEEeecceeecchhhh
Confidence 34667777766 5556666778999999877 443332 234100 000 012334555554433332222111
Q ss_pred eEEEEEecCCceEEEEe-CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEE--EE---EEeCC--EEEEEeCCCcEEEE
Q 016224 183 QCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY--AM---AVGND--LLFAGTQDGAILAW 254 (393)
Q Consensus 183 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~--~l---~~~~~--~l~~~~~dg~I~vw 254 (393)
........-.. ..+.- +.+..+...++.+.+||...........+..... ++ -++++ ++++|+.-+.|.+|
T Consensus 82 ~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW 160 (967)
T KOG0974|consen 82 IIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVW 160 (967)
T ss_pred hhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEE
Confidence 10000000000 11222 3444455688899999999888775444444332 22 22444 89999999999999
Q ss_pred EeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceee-EeccCccceEEEEEcCCEEEEEeC
Q 016224 255 KFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQ-TLTEHTSVVMSLLCWDQFLLSCSL 331 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~l~s~s~ 331 (393)
+.... .....+.+|.+.+.++.+ ++.++++.+.|.++++|++.+.+... +.-+|...+..+.+.+..+++++.
T Consensus 161 ~~~~d----n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~ge 236 (967)
T KOG0974|consen 161 KPHED----NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGE 236 (967)
T ss_pred ecccc----CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEecc
Confidence 99843 222368899999999998 68899999999999999999988776 667899999999999889999999
Q ss_pred CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
|-+.++|+.. ...+..+..|.. ..+..+...+... .++|++.|+.+++|++..
T Consensus 237 dctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~---~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 237 DCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVI---IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCce---EEEeeccCcchhhhhhhc
Confidence 9999999763 455555555443 3577777766555 899999999999999854
No 205
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.2e-14 Score=126.99 Aligned_cols=205 Identities=22% Similarity=0.300 Sum_probs=147.4
Q ss_pred cceeecceEEeeEecC--cEEEecCCCeEEEEECC------CC---cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCc
Q 016224 105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVG------DG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173 (393)
Q Consensus 105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~------~~---~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~ 173 (393)
...|+.+|.|+....+ .+++|+.||+|+.|++. +. ..+...+.||++.|+.+++|+....|++++.||+
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT 419 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT 419 (577)
T ss_pred EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCce
Confidence 4468899999999865 67889999999999654 11 2455688999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecC---CceEEEEe-CC--CEEEEE-cCCeEEEEECCCCceeeecC--------CCCcEEEEEEe
Q 016224 174 VRVWDCASGQCAGVINLG---GEVGCMIS-EG--PWIFIG-VTNFVKAWNTQTNTDLSLSG--------PVGQVYAMAVG 238 (393)
Q Consensus 174 v~iwd~~~~~~~~~~~~~---~~~~~~~~-~~--~~l~~~-~~~~i~v~d~~~~~~~~~~~--------~~~~v~~l~~~ 238 (393)
|++|+...... .++... .....+.. .. .+.+++ .-+.-.++++.....+.+.. ....+.-+..+
T Consensus 420 vr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 420 VRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred EEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence 99999876655 333322 11122221 11 112221 22333344444433332111 12345666677
Q ss_pred CC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224 239 ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS 314 (393)
Q Consensus 239 ~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 314 (393)
+. +.+++..|+.|+++|..++ .++.....|...++++++++ -+|++++.|+.+++|.+....++.....|..
T Consensus 499 ~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 499 PTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred CCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 76 9999999999999999887 77788888999999999874 4899999999999999988888877766653
No 206
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=124.08 Aligned_cols=249 Identities=17% Similarity=0.202 Sum_probs=177.7
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE----EE---eCCCEEEEEcCCeEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC----MI---SEGPWIFIGVTNFVK 213 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~---~~~~~l~~~~~~~i~ 213 (393)
.+...|..|.+.|..|.|...|..|+||+.|..|.+||...++....+..+..... +. .+..++.++.|+.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 55667899999999999999999999999999999999998887777654422111 22 244555567999998
Q ss_pred EEECCCCcee----eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCce---eeEEEEEEc-
Q 016224 214 AWNTQTNTDL----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS---LAVVSLVVG- 282 (393)
Q Consensus 214 v~d~~~~~~~----~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---~~v~~l~~~- 282 (393)
+-.+.....+ .+..|.+.|.-++..|+ .|.+++.|+.+.-+|++......... .-..+. ....+++.+
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence 8776544332 56779999999998766 89999999999999999875432222 222222 245666765
Q ss_pred --CCEEEEecCCCcEEEeeCCCcce------eeEecc------CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc--
Q 016224 283 --ANKLYSGSMDNSIRVWNLETLQC------IQTLTE------HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG-- 344 (393)
Q Consensus 283 --~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~------~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-- 344 (393)
.+.+++++.|-.+++||.+.... +..+.. ....|++++++ +.-|+++-.|-.|+++...-+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 35899999999999999875322 233322 23467999998 4567777778889999543211
Q ss_pred ----------c-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 345 ----------N-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 345 ----------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
. ...+.+|.....|-.+.|. ++...|+++|+.=|.|.||+-.++++
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf--GPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFF--GPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeec--cCccceEEecCccceEEEEecchhHH
Confidence 1 1224556655566666654 33444999999999999999888765
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2e-13 Score=120.51 Aligned_cols=192 Identities=19% Similarity=0.185 Sum_probs=134.9
Q ss_pred EEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224 113 LCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (393)
Q Consensus 113 ~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (393)
.+++|+.+ .+.+|+.||++|||+..+. ..+.....|.+.|.+|.|+|||++|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 66777765 4557999999999998887 6777788899999999999999999999999 999999999965544321
Q ss_pred CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC------EEEE-EeCCCcEEEEEeccCCcc-
Q 016224 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND------LLFA-GTQDGAILAWKFNVTTNC- 262 (393)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~------~l~~-~~~dg~I~vwd~~~~~~~- 262 (393)
. ........+.|+.+ ++++ ....+.|..||+......
T Consensus 226 ~-----------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 226 F-----------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred c-----------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 1 11112223333222 2222 233445666655443221
Q ss_pred -ccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEcC--CEEEEEeCCCcEE
Q 016224 263 -FEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCWD--QFLLSCSLDKTIK 336 (393)
Q Consensus 263 -~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~--~~l~s~s~dg~i~ 336 (393)
.+..+.... ...|.+++. +|++++.|+.||.|-|++..+.+.++-++ .|...|+.+.|++ +++++.+.|.++.
T Consensus 271 ~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 271 FLRLRKKIKR-FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred ccchhhhhhc-cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 111111222 234555554 68899999999999999999988877765 7999999999994 5889999999888
Q ss_pred EEEcCC
Q 016224 337 VWFATD 342 (393)
Q Consensus 337 iwd~~~ 342 (393)
|..+.-
T Consensus 350 v~~l~v 355 (398)
T KOG0771|consen 350 VTKLAV 355 (398)
T ss_pred EEEEee
Confidence 887653
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2e-12 Score=118.29 Aligned_cols=235 Identities=17% Similarity=0.240 Sum_probs=168.4
Q ss_pred CCcCCEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCCceEEE-----------------------------
Q 016224 148 GHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCM----------------------------- 197 (393)
Q Consensus 148 ~h~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~----------------------------- 197 (393)
.|...-+.|..+|||+|++ ||-.--.|++||+..-.....-.....+..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4778889999999999875 5666789999999765433322222111110
Q ss_pred --------------EeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224 198 --------------ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 198 --------------~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~ 260 (393)
.+...++++|....|+-++++.|+.+ .+....+.++++..++. +|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 01345667778889999999999988 55555688999999886 89999999999999998864
Q ss_pred ccccC--ceeecCce-----eeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEcC----CEE
Q 016224 261 NCFEP--AASLKGHS-----LAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCWD----QFL 326 (393)
Q Consensus 261 ~~~~~--~~~~~~~~-----~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~----~~l 326 (393)
....+ ......|. ..|+++.|++ -.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.. ..+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 32111 11222233 3489999975 379999999999999999988765443 2345778888852 334
Q ss_pred EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
++ .....++|||-.+++....+... ..+..+|+.|++. +++++-.+..+..|=+++
T Consensus 289 ~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sG---m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 289 VS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSG---MFFTANESSKMHTYYIPS 344 (703)
T ss_pred Ee-cchHHhhhcccccCCceeecccc---CCcCceeeecCCc---eEEEecCCCcceeEEccc
Confidence 43 34568999999888876665443 2378899999876 899999988888776664
No 209
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.52 E-value=4.2e-11 Score=112.32 Aligned_cols=265 Identities=14% Similarity=0.138 Sum_probs=173.3
Q ss_pred EecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE
Q 016224 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196 (393)
Q Consensus 117 ~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 196 (393)
...+.+++++.++.|+.+|..++ +.+...+........... ++..++.++.++.|..+|..+|+.+........+..
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 139 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS 139 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec
Confidence 34667888999999999999999 666555544322222222 467888899999999999999999888776654332
Q ss_pred --EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcE-----EEEEEeCCEEEEEeCCCcEEEEEeccCCccccCcee
Q 016224 197 --MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQV-----YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (393)
Q Consensus 197 --~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v-----~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 268 (393)
...++.+++...++.+..+|.++++.+ ........+ ....+..+.++++..++.+..+|.+++...++....
T Consensus 140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 223455555557889999999998876 322221111 112233457888888999999999887543321110
Q ss_pred ec-Cce-----eeE-EEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcC
Q 016224 269 LK-GHS-----LAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 269 ~~-~~~-----~~v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~ 341 (393)
.. +.. ..+ ......++.+++++.+|.++.||.++++.+..... .........+..++.++.||.|..+|..
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECC
Confidence 00 000 000 11223467888888999999999999988776652 1223444568888889999999999998
Q ss_pred CCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+++.+......... ....... .+. .|++++.+|.|+++|..+|++
T Consensus 298 tG~~~W~~~~~~~~-~~ssp~i--~g~---~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 298 SGSELWKNDELKYR-QLTAPAV--VGG---YLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CCcEEEccccccCC-ccccCEE--ECC---EEEEEeCCCEEEEEECCCCCE
Confidence 87655433221111 0111111 122 788999999999999998875
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.50 E-value=1.3e-12 Score=121.47 Aligned_cols=229 Identities=12% Similarity=0.200 Sum_probs=167.9
Q ss_pred ccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224 104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (393)
Q Consensus 104 ~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (393)
.--.|+..|+|++|+.++ +.+|+.|+.|.+|+..-. -. ..+ .|.+.|.||.|+|-...|+|++-. ..-+|..+.
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q 123 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ 123 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence 344578899999999774 446999999999986532 12 222 499999999999999999999875 567888764
Q ss_pred CeEEEEEecCCceE--EEEeCCCEEEEE-cCCeEEEEECCCCceeee---cCCCCcEEEEEEeCC-------EEEEEeCC
Q 016224 182 GQCAGVINLGGEVG--CMISEGPWIFIG-VTNFVKAWNTQTNTDLSL---SGPVGQVYAMAVGND-------LLFAGTQD 248 (393)
Q Consensus 182 ~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~---~~~~~~v~~l~~~~~-------~l~~~~~d 248 (393)
.... ..+....+. ++..+|.+++.| .+|+|.+-+....+...+ .+..++|.+++|+|. .+++....
T Consensus 124 K~V~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 124 KSVS-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred hhHH-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence 3322 222222222 234689999998 888999987666555544 347889999999875 88999999
Q ss_pred CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL 326 (393)
Q Consensus 249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l 326 (393)
.++.++.+.......+.... ....+.+...+|.+++.|+.|+.+.+|- +.|-.+.++......|+.+... ++++
T Consensus 203 qTLSFy~LsG~~Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 203 QTLSFYQLSGKQIGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred ceeEEEEecceeecccccCC---CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceE
Confidence 99999988754221111111 2222334445789999999999999997 5577778887788889888776 6799
Q ss_pred EEEeCCCcEEEEEcC
Q 016224 327 LSCSLDKTIKVWFAT 341 (393)
Q Consensus 327 ~s~s~dg~i~iwd~~ 341 (393)
+.|+.||+|-.|++.
T Consensus 279 ~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCeeehhhhH
Confidence 999999999999764
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=8.4e-11 Score=108.24 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=139.9
Q ss_pred ceEEeeEecCc--EEE-ecCCCeEEEEECC-CC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCC--
Q 016224 111 DILCRNWVQGN--CMY-GEKCKFLHSWTVG-DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASG-- 182 (393)
Q Consensus 111 ~i~c~~~~~~~--~~~-g~~dg~i~vwd~~-~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~-- 182 (393)
....+.+++++ +++ +..++.|.+|+++ ++ .+.+.... .......|+|+|++++|++++. ++.|.+|++++.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 34566777663 333 3467899999986 33 12233332 3345678999999999988875 889999999742
Q ss_pred --eEEEEEecCC--ceEEEEeCCCEEEEE--cCCeEEEEECCCCceee-------ecCCCCcEEEEEEeCC--EEEEEeC
Q 016224 183 --QCAGVINLGG--EVGCMISEGPWIFIG--VTNFVKAWNTQTNTDLS-------LSGPVGQVYAMAVGND--LLFAGTQ 247 (393)
Q Consensus 183 --~~~~~~~~~~--~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~-------~~~~~~~v~~l~~~~~--~l~~~~~ 247 (393)
+.+..+.... ....+.++++++++. .++.|.+||+.+...+. ..........+.|+|+ +++++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 115 PVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred CCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 2233332221 223355688888665 56799999998643221 1112344678899998 6666665
Q ss_pred -CCcEEEEEeccCCccccCceeecCc------eeeEEEE--EEcCCEEEEec-CCCcEEEeeCCCcc----eeeEeccCc
Q 016224 248 -DGAILAWKFNVTTNCFEPAASLKGH------SLAVVSL--VVGANKLYSGS-MDNSIRVWNLETLQ----CIQTLTEHT 313 (393)
Q Consensus 248 -dg~I~vwd~~~~~~~~~~~~~~~~~------~~~v~~l--~~~~~~l~sg~-~dg~i~iwd~~~~~----~~~~~~~~~ 313 (393)
++.|.+|++.......+....+... ......+ ..++++++++. .++.|.+|++.... .+..+...
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~- 273 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE- 273 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-
Confidence 8999999998532222222222211 1112234 45567888775 47899999986433 22222211
Q ss_pred cceEEEEEc--CCEEEEEeC-CCcEEEEEcC
Q 016224 314 SVVMSLLCW--DQFLLSCSL-DKTIKVWFAT 341 (393)
Q Consensus 314 ~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~ 341 (393)
.....+.++ +++|+++.. +++|.+|++.
T Consensus 274 ~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 122345555 778887765 8999999885
No 212
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.48 E-value=4.4e-13 Score=117.68 Aligned_cols=165 Identities=26% Similarity=0.359 Sum_probs=132.0
Q ss_pred cCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224 150 QKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (393)
Q Consensus 150 ~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~ 228 (393)
..+|..+.|.+++. .|+||+.|..|+||.++.++.-.. +..|.. .-.+..|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------------------~~~V~y-------~s~Ls~H 64 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------------------DMKVEY-------LSSLSRH 64 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------------------ceeEEE-------eecccCC
Confidence 46899999988766 999999999999999876542110 000000 1156789
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC------------CccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT------------TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD 292 (393)
Q Consensus 229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~------------~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d 292 (393)
...|+.+.|+|+ +|++|+.+|.|.+|..... .+.+.....+.+|...+..++|. ++++++++.|
T Consensus 65 ~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc
Confidence 999999999998 9999999999999987621 11133445677899999999986 5689999999
Q ss_pred CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD 342 (393)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~ 342 (393)
..+++||+..|+.+..+..|...+..++|+ ++++++-+.|...+.+.+..
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 999999999999999999999999999999 78999999998777776653
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.3e-12 Score=115.34 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=130.4
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEE
Q 016224 154 SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233 (393)
Q Consensus 154 ~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~ 233 (393)
..++|+.++..|++++.||++|||+......+. ....|...|.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-------------------------------------~e~~~~~eV~ 190 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-------------------------------------EEIAHHAEVK 190 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-------------------------------------hhHhhcCccc
Confidence 678999999999999999999999976554332 3457889999
Q ss_pred EEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec--CceeeEEEEEE--cC---C-EEE-EecCCCcEEEeeCCC
Q 016224 234 AMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--GHSLAVVSLVV--GA---N-KLY-SGSMDNSIRVWNLET 302 (393)
Q Consensus 234 ~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~--~~---~-~l~-sg~~dg~i~iwd~~~ 302 (393)
++.|+|| +|++-+.| ..+||+.+++.. +.... ........+-| ++ . +++ .....+.|+.||+..
T Consensus 191 DL~FS~dgk~lasig~d-~~~VW~~~~g~~----~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~ 265 (398)
T KOG0771|consen 191 DLDFSPDGKFLASIGAD-SARVWSVNTGAA----LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISL 265 (398)
T ss_pred cceeCCCCcEEEEecCC-ceEEEEeccCch----hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeee
Confidence 9999999 88888888 999999998732 11111 11111112222 22 2 222 233345666666543
Q ss_pred cce-----eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224 303 LQC-----IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (393)
Q Consensus 303 ~~~-----~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 375 (393)
... ..+.......|.+++.+ |++++.|+.||.|-|++..+.+.+.... +.+...|+.+.|+|+.. ++++
T Consensus 266 w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr---~~~s 341 (398)
T KOG0771|consen 266 WSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSR---YLAS 341 (398)
T ss_pred eccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcC---cccc
Confidence 211 12222233467777777 8899999999999999998777665544 34445799999999877 7888
Q ss_pred EeCCCeEEEEeCC
Q 016224 376 SCNDNSVRFYDLP 388 (393)
Q Consensus 376 ~s~dg~I~iwd~~ 388 (393)
-+.|..+.|..+.
T Consensus 342 vSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 342 VSSDNEAAVTKLA 354 (398)
T ss_pred cccCCceeEEEEe
Confidence 8888888887664
No 214
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1e-10 Score=109.69 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=164.4
Q ss_pred ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE--
Q 016224 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG-- 195 (393)
Q Consensus 118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~-- 195 (393)
..+.+++++.++.++.+|..++ +.+....... .+.+.-.. .+..++.++.+|.|..||.++|+.+..+.......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDG-KELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCC-cEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 3566778899999999999998 5655544322 22211111 34577778889999999999999888776544321
Q ss_pred -----EEEeCCCEEEEEcCCeEEEEECCCCcee-eec--CCCC---------cEEEEEEeCCEEEEEeCCCcEEEEEecc
Q 016224 196 -----CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS--GPVG---------QVYAMAVGNDLLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 196 -----~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~--~~~~---------~v~~l~~~~~~l~~~~~dg~I~vwd~~~ 258 (393)
....++.+++...++.+..+|.++++.+ ... .... ......+..+.+++++.+|.++.||..+
T Consensus 181 ~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 181 RGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred cCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 1223443333446789999999998765 211 0000 0112233456888889999999999988
Q ss_pred CCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcCCEEEEEeCCCcEEE
Q 016224 259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKV 337 (393)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~i 337 (393)
+...+.. .. .........++.++.++.||.|..+|..+++.+..... ......+....+..|++++.+|.|.+
T Consensus 261 G~~~W~~----~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 261 GRVLWKR----DA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHW 334 (377)
T ss_pred CcEEEee----cc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEE
Confidence 7433221 11 11223445678888899999999999999988766632 22223344446889999999999999
Q ss_pred EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (393)
Q Consensus 338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw 385 (393)
+|..+++.+.....+... + ..+|--.++ .|+.++.||.|+.|
T Consensus 335 ~d~~tG~~~~~~~~~~~~--~---~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSG--I---ASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCc--c---ccCCEEECC-EEEEEeCCceEEEe
Confidence 999888777665543322 1 111111122 58888899999876
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=1.2e-10 Score=107.60 Aligned_cols=259 Identities=15% Similarity=0.196 Sum_probs=161.0
Q ss_pred EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCC
Q 016224 124 YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEG 201 (393)
Q Consensus 124 ~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~ 201 (393)
+-..++.|.+.|..+. +.+.++......-..+.|+||++++++++.||.|.++|+.+.+.+.++........+ .+++
T Consensus 11 ~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG 89 (369)
T PF02239_consen 11 VERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDG 89 (369)
T ss_dssp EEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TT
T ss_pred EecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCC
Confidence 4667899999999987 888888865554455789999999999999999999999999999999887766544 4699
Q ss_pred CEEEEE--cCCeEEEEECCCCceee-ecC-------CCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224 202 PWIFIG--VTNFVKAWNTQTNTDLS-LSG-------PVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (393)
Q Consensus 202 ~~l~~~--~~~~i~v~d~~~~~~~~-~~~-------~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 268 (393)
++++++ ..+.+.++|.++.+.+. +.. ....+.++..++. ++++--+.+.|.+.|...... .....
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~~ 167 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVTT 167 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEEE
T ss_pred CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--cceee
Confidence 999987 67899999999988762 211 3456777777665 444445558888888766521 11111
Q ss_pred ecCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcceeeEec----cCccceEEEE-------E----cCCEEEEEe
Q 016224 269 LKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLT----EHTSVVMSLL-------C----WDQFLLSCS 330 (393)
Q Consensus 269 ~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~-------~----~~~~l~s~s 330 (393)
+. -........++ ++++ ++...+..|-++|.++++.+..+. .|..+...+- | .+.+.++.-
T Consensus 168 i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 168 IK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred ec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence 11 12223344554 5565 445667899999999988877653 2333333321 1 133333333
Q ss_pred CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE----eCCCeEEEEeCCceee
Q 016224 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS----CNDNSVRFYDLPSVII 392 (393)
Q Consensus 331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~----s~dg~I~iwd~~s~~l 392 (393)
....+.+||..+.+.+..+..... + .-+..+|+++ ++... ...++|.++|..+.++
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~--g-lFi~thP~s~---~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGG--G-LFIKTHPDSR---YVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSS--S---EE--TT-S---EEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred cCCccccchhhcCeEEEEEECCCC--c-ceeecCCCCc---cEEeeccCCCCCceEEEEECcCcce
Confidence 344666788877777777665433 2 5566677665 78777 5568999999998764
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=7.8e-12 Score=109.55 Aligned_cols=211 Identities=15% Similarity=0.166 Sum_probs=152.5
Q ss_pred eecceEEeeEecCcEEEecCCCeEEEEECCCC---cEEEEEecCCcCCEEEEEecCCC-CEEEEEeCC--CcEEEEECCC
Q 016224 108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKD--ETVRVWDCAS 181 (393)
Q Consensus 108 ~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~---~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~d--g~v~iwd~~~ 181 (393)
...+|..+...++.++++..+|.+.+|..+.+ ...+..+..+ ..+..|.-++.. .++++|+.. ..++|||++.
T Consensus 104 ~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 104 GTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 44577888888899999999999999998843 1334445444 456666666644 455668988 8999999988
Q ss_pred CeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeC---C-EEEEEeCCCcEEEEEec
Q 016224 182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---D-LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~---~-~l~~~~~dg~I~vwd~~ 257 (393)
.+.+..-+.... .. .+=.|.+| ++++.|-+ . .|++++.-+.|++||.+
T Consensus 183 ~~qiw~aKNvpn--D~----------L~LrVPvW----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 183 SKQIWSAKNVPN--DR----------LGLRVPVW----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred ceeeeeccCCCC--cc----------ccceeeee----------------eccceecCCCCCceEEEEecceeEEEecCc
Confidence 754433221100 00 00022233 34555533 2 89999999999999998
Q ss_pred cCCccccCceeecCceeeEEEEE--EcCCEEEEecCCCcEEEeeCCCcceeeE-eccCccceEEEEEcCC--EEEEEeCC
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLV--VGANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCWDQ--FLLSCSLD 332 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~--~l~s~s~d 332 (393)
.+. +++..+.-...+++++. ++++++++|..-+.+..||++.++.+.. +++-.+.+.+|..++. ++++++.|
T Consensus 235 ~qR---RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 235 HQR---RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred ccC---cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 664 56666655555555554 5688999999999999999999998877 8899999999999955 99999999
Q ss_pred CcEEEEEcCCCcceEEEE
Q 016224 333 KTIKVWFATDSGNLEVTY 350 (393)
Q Consensus 333 g~i~iwd~~~~~~~~~~~ 350 (393)
..|||+|+.+.+.+...+
T Consensus 312 RyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 312 RYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred eeEEEeecccchhhhhhh
Confidence 999999998865544433
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.44 E-value=2.6e-12 Score=116.62 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=159.8
Q ss_pred CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEEE----------eCCCEEEEEcCCeEEEE
Q 016224 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMI----------SEGPWIFIGVTNFVKAW 215 (393)
Q Consensus 148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~----------~~~~~l~~~~~~~i~v~ 215 (393)
.|...|.++.|+.....+.+++.+..++-||+ +.........+... ..+. ....+++++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~-~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDV-SRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecc-cchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46777789999887776666655544444444 33333333322211 1111 13446777899999998
Q ss_pred ECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEEEec
Q 016224 216 NTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGS 290 (393)
Q Consensus 216 d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~ 290 (393)
+-...-......|.+.+.+-.|+++ -|+++++||.|++|.-.. -+...+.....+|.|++|.++ .+++.+
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 8776666688899999999999999 899999999999997443 233445556778999999754 455554
Q ss_pred CCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
+.+.|=-+.....+-.++.|.+-|.++.|+ .+.+++|++|-..+|||.. +..+. ....++.++++++|.|+ .
T Consensus 166 --~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf--~S~~~ey~ITSva~npd-~ 239 (737)
T KOG1524|consen 166 --GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLF--TSAAEEYAITSVAFNPE-K 239 (737)
T ss_pred --CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccccc--cCChhccceeeeeeccc-c
Confidence 456666666666778899999999999999 6799999999999999974 44333 33444556999999998 3
Q ss_pred CCcEEEEEeCCCeEEEEeCCceee
Q 016224 369 GKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 369 ~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.++.+|. +++++=..+.|.+
T Consensus 240 ---~~~v~S~-nt~R~~~p~~GSi 259 (737)
T KOG1524|consen 240 ---DYLLWSY-NTARFSSPRVGSI 259 (737)
T ss_pred ---ceeeeee-eeeeecCCCccce
Confidence 4666654 4666555554443
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=2e-12 Score=117.42 Aligned_cols=136 Identities=18% Similarity=0.335 Sum_probs=104.1
Q ss_pred eeecceEEeeEecC---cEEEecCCCeEEEEECCC--------------C--cE-----------EEEEecCCcCCEEEE
Q 016224 107 VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGD--------------G--FK-----------LLTQLEGHQKVVSGI 156 (393)
Q Consensus 107 ~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~--------------~--~~-----------~~~~l~~h~~~I~~i 156 (393)
..+..++|+.|.++ .++++-.+|.+++||..- + +. ++..+.--+..|...
T Consensus 217 i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 217 INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF 296 (636)
T ss_pred ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence 34469999999854 345677899999997531 0 11 111122234578888
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEE
Q 016224 157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA 236 (393)
Q Consensus 157 ~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~ 236 (393)
+|+|||++||+.+.||.++|+|..+.+.+..+ ...-+...|++
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-------------------------------------kSYFGGLLCvc 339 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-------------------------------------KSYFGGLLCVC 339 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHHHH-------------------------------------HhhccceEEEE
Confidence 99999999999999999999998876654322 33456788999
Q ss_pred EeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC
Q 016224 237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA 283 (393)
Q Consensus 237 ~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 283 (393)
|+|| ++++|++|.-|.||.+... +.+..-++|...|..++|++
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecc
Confidence 9999 9999999999999999876 66778889999999999997
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.9e-11 Score=106.00 Aligned_cols=239 Identities=10% Similarity=0.139 Sum_probs=163.1
Q ss_pred CcCCEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEEEEEe------c-CCceEEEE-eCCCEEEEEcCCeEEEEECC
Q 016224 149 HQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAGVIN------L-GGEVGCMI-SEGPWIFIGVTNFVKAWNTQ 218 (393)
Q Consensus 149 h~~~I~~i~~s~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~-~~~~~~~~-~~~~~l~~~~~~~i~v~d~~ 218 (393)
....|+.++|.-+ .+.|...+.|-.+..+.+....+..... . ...+..+. .++.++++-.+|.+.+|..+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 3467788888544 3456666577788888877766555431 1 11222222 46777777799999999998
Q ss_pred CCc-----eeeecCCCCcEEEEEEeC---CEEEEEeCC--CcEEEEEeccCCccccCceeec---Cc--eeeEEEEEEc-
Q 016224 219 TNT-----DLSLSGPVGQVYAMAVGN---DLLFAGTQD--GAILAWKFNVTTNCFEPAASLK---GH--SLAVVSLVVG- 282 (393)
Q Consensus 219 ~~~-----~~~~~~~~~~v~~l~~~~---~~l~~~~~d--g~I~vwd~~~~~~~~~~~~~~~---~~--~~~v~~l~~~- 282 (393)
.+. ...+.. ...+..|.-++ .++++|+.. ..+.+||+.+..+.+.....-. +- ...++.+.|-
T Consensus 134 ~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 443 333322 24455555444 388889999 8899999998754332211111 11 2233445552
Q ss_pred ---CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCc
Q 016224 283 ---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356 (393)
Q Consensus 283 ---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 356 (393)
...|++++.-+.+++||.+. .+++..|..-..+++++... ++++++|..-+.+..||++.+..+..... .-..
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k-g~tG 291 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK-GITG 291 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC-CccC
Confidence 34799999999999999986 46788888777788777655 78999999999999999988766555222 2223
Q ss_pred cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 357 ~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.+.++..+|..+ +|++++-|..|||+|+.+-++
T Consensus 292 sirsih~hp~~~---~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 292 SIRSIHCHPTHP---VLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CcceEEEcCCCc---eEEeeccceeEEEeecccchh
Confidence 477787777666 999999999999999998544
No 220
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=3.7e-09 Score=95.86 Aligned_cols=253 Identities=13% Similarity=0.118 Sum_probs=163.3
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC----------CCcEEEEECCCCeEEEEEecCCc-----
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLGGE----- 193 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~----- 193 (393)
+.|.+.|..+. +.+.++..-..+-. + ++||++.|+.+.. +..|.+||..+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 89999999998 88888875444433 4 9999999988766 78999999999999999987654
Q ss_pred -----eEEEEeCCCEEEEEc---CCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc-c
Q 016224 194 -----VGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF-E 264 (393)
Q Consensus 194 -----~~~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~-~ 264 (393)
...+.+++++|++.. ++.|.+.|+.+++.+....-.+...-+..+++.+.+-+.||......+....... .
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 455668999999763 6799999999999884433344444444444444455566666655444332110 0
Q ss_pred CceeecCc-----eeeEEEEEE-cCCEEEEecCCCcEEEeeCCC-----cceeeEeccC-------ccceEEEEEc--CC
Q 016224 265 PAASLKGH-----SLAVVSLVV-GANKLYSGSMDNSIRVWNLET-----LQCIQTLTEH-------TSVVMSLLCW--DQ 324 (393)
Q Consensus 265 ~~~~~~~~-----~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~-------~~~v~~l~~~--~~ 324 (393)
....+... ..+ .+.. ++.+++.... |+|.+.|+.. .+.+..+... .+...-++++ ++
T Consensus 184 ~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 00011110 111 2233 5666666666 9999999543 3333333211 1222336665 56
Q ss_pred EEEEEe----------CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCCceee
Q 016224 325 FLLSCS----------LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSVII 392 (393)
Q Consensus 325 ~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~s~~l 392 (393)
.+++.. ..+.|.++|..+.+.+..+... ..+..+.++|+. +++|++.. .++.|.++|+.++++
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dg--kp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQDA--KPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCCC--CeEEEEeCCCCCcEEEEECcCCeE
Confidence 666532 1257999999888777666543 247788888763 32555554 688999999999865
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.40 E-value=8.2e-12 Score=113.52 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=126.7
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEe----cCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQL----EGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l----~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 195 (393)
.++.|-.-|.|.+.|.... +..+.+ .-.+..|++|.|-|. ...++.+-.+|.+.++|.+-. .....+..
T Consensus 187 dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~t~p~~ 260 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGATAPSY 260 (636)
T ss_pred ceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccCCCCcc
Confidence 3556777777877775432 221111 123588999999874 455666778999999987211 01111111
Q ss_pred EEEeCCCEEEEE------cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCce
Q 016224 196 CMISEGPWIFIG------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (393)
Q Consensus 196 ~~~~~~~~l~~~------~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~ 267 (393)
....++..+... .++-+.-| .--.+.|..++|++| +||+.+.||.++|||+.+. +++.
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w----------~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----eLlg 326 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARW----------HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ----ELLG 326 (636)
T ss_pred cccCCCCeeEEeeeeccccCCcccee----------EeccccccceeEcCCCceEEEEecCceEEEeeccHH----HHHH
Confidence 222233333322 11222222 223448889999999 9999999999999999886 5555
Q ss_pred eecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224 268 SLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD 323 (393)
Q Consensus 268 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 323 (393)
.++..-+...|++|+ +++|++|++|-.|.||.+..++.+..=++|...|..++|++
T Consensus 327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 556666777888885 67999999999999999999999999999999999999996
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=1.8e-10 Score=106.51 Aligned_cols=271 Identities=12% Similarity=0.077 Sum_probs=162.7
Q ss_pred eeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC
Q 016224 115 RNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG 191 (393)
Q Consensus 115 ~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~ 191 (393)
+.+++++ +++.+.||.|.++|+.+. +.+++++.-. .-.++++++||++++++. .++.|.++|.++.+.++.+...
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 4567754 556788999999999998 8888887554 457899999999998775 6899999999999999888653
Q ss_pred C--------ceEEEE--eCCC-EEEEEc-CCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 016224 192 G--------EVGCMI--SEGP-WIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAW 254 (393)
Q Consensus 192 ~--------~~~~~~--~~~~-~l~~~~-~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vw 254 (393)
. .+..+. +... +++.-. .+.|.+.|....+.+ .............|+++ ++++...+..|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 2 223332 4555 444444 468888888776543 34445567788899988 44556677889999
Q ss_pred EeccCCccccCceeecCceeeEE-----------EEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-
Q 016224 255 KFNVTTNCFEPAASLKGHSLAVV-----------SLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW- 322 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v~-----------~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~- 322 (393)
|..+.............|..... ...-.+...++.-....+.+||..+.+.++++...... .-+..+
T Consensus 200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP 278 (369)
T PF02239_consen 200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP 278 (369)
T ss_dssp ETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T
T ss_pred eeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC
Confidence 98775321110000112332222 22222333333333456778999999999999876666 444444
Q ss_pred -CCEEEEE----eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-C-CCeEEEEeCCceee
Q 016224 323 -DQFLLSC----SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-N-DNSVRFYDLPSVII 392 (393)
Q Consensus 323 -~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~-dg~I~iwd~~s~~l 392 (393)
++++.+. ...++|.++|.++.+....+... ....+..+.|++++. .+..+. . ++.|.+||..+.++
T Consensus 279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 279 DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEE
T ss_pred CCccEEeeccCCCCCceEEEEECcCcceeEEEecc-CCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEE
Confidence 6688877 44589999999877444333222 223488888988765 444433 3 33799999999875
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=7.5e-10 Score=105.25 Aligned_cols=225 Identities=10% Similarity=-0.029 Sum_probs=139.4
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCC--ceEEEEeCCCE
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGG--EVGCMISEGPW 203 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~ 203 (393)
..|.+||.+.. .. +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++......... ....+.++++.
T Consensus 179 ~~l~~~d~dg~-~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGY-NQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCC-CC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCE
Confidence 37888988754 22 334456778999999999999987643 4579999999886544433322 23456688987
Q ss_pred EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCCcEEEE--EeccCCccccCceeecCcee
Q 016224 204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGAILAW--KFNVTTNCFEPAASLKGHSL 274 (393)
Q Consensus 204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg~I~vw--d~~~~~~~~~~~~~~~~~~~ 274 (393)
|+.. .++ .|.+||+.+++...+..+...+....|+|+ .|+..+ .++...+| |+..+. ...+..+..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-----~~~lt~~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-----PQRITWEGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-----eEEeecCCC
Confidence 7754 333 699999999887777666667888999998 555444 44555555 444332 112221222
Q ss_pred eE--EEEEEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCc---EEEEEcCCCc
Q 016224 275 AV--VSLVVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT---IKVWFATDSG 344 (393)
Q Consensus 275 ~v--~~l~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~---i~iwd~~~~~ 344 (393)
.. ..++.++++|+..+.+ ..|.+||+.+++.. .+... .......|+ +++|+..+.++. +.++++ +++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~ 408 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGR 408 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence 22 3344567777665433 35888999887643 33321 112234454 778888887764 667776 344
Q ss_pred ceEEEEeecCCccEEEEEeee
Q 016224 345 NLEVTYTHNEEHGVLALCGMP 365 (393)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~~~ 365 (393)
....+..+.. .+...+|+|
T Consensus 409 ~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 409 FKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CeEECccCCC--CcCCcccCC
Confidence 4454544333 355666665
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.29 E-value=4.8e-09 Score=90.37 Aligned_cols=262 Identities=13% Similarity=0.188 Sum_probs=164.4
Q ss_pred ceEEeeEecCcEE---EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEE
Q 016224 111 DILCRNWVQGNCM---YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 111 ~i~c~~~~~~~~~---~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
.|.-+.|..+.+. ....++.|.+|++.+. +-...++....++.+++|||||+ +|.+...|-.|.||.+.+.+...
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 5566778877544 4778999999999987 77778888999999999999995 55566779999999998876554
Q ss_pred EEecCC--ceEEEEeCCCEEEEE-------------------------------------cCCeEEEEECCCCceeeecC
Q 016224 187 VINLGG--EVGCMISEGPWIFIG-------------------------------------VTNFVKAWNTQTNTDLSLSG 227 (393)
Q Consensus 187 ~~~~~~--~~~~~~~~~~~l~~~-------------------------------------~~~~i~v~d~~~~~~~~~~~ 227 (393)
.-.... ....+.+++++.+.. .++.+.+||.--.-.+-...
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 332222 223333454444332 12244455543322222223
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC---------------C------c-----------------------
Q 016224 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT---------------T------N----------------------- 261 (393)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~---------------~------~----------------------- 261 (393)
..-.+..+.|+|. +|++|+.|+.+++.+--+- . +
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~ 288 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI 288 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence 3346778889984 9999999999988652110 0 0
Q ss_pred ------ccc------------CceeecCceeeEEEEEEcCC--EEEEecC--CCcEEEeeCCCcceeeEeccCccceEEE
Q 016224 262 ------CFE------------PAASLKGHSLAVVSLVVGAN--KLYSGSM--DNSIRVWNLETLQCIQTLTEHTSVVMSL 319 (393)
Q Consensus 262 ------~~~------------~~~~~~~~~~~v~~l~~~~~--~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l 319 (393)
.++ +...+......+--++|+.+ ++++-.. -+.+-+||++..+....+ ....+|...
T Consensus 289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf 367 (447)
T KOG4497|consen 289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAF 367 (447)
T ss_pred cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEE
Confidence 000 00000111223344566533 4444332 357999999987765444 366789999
Q ss_pred EEcCC--EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224 320 LCWDQ--FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (393)
Q Consensus 320 ~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg 380 (393)
.|++. .|+.+.....+++|...- ............+..+.|..+++ .++-.+.|.
T Consensus 368 ~WdP~~prL~vctg~srLY~W~psg---~~~V~vP~~GF~i~~l~W~~~g~---~i~l~~kDa 424 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKSRLYFWAPSG---PRVVGVPKKGFNIQKLQWLQPGE---FIVLCGKDA 424 (447)
T ss_pred EeCCCCceEEEEcCCceEEEEcCCC---ceEEecCCCCceeeeEEecCCCc---EEEEEcCCc
Confidence 99943 566666677899998753 22333334446789999988776 677777764
No 225
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.29 E-value=6.4e-09 Score=98.07 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=165.8
Q ss_pred EecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--
Q 016224 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-- 194 (393)
Q Consensus 117 ~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-- 194 (393)
...+.++.++.++.++.+|.+++ +.+-+.+.......+... .+..++.+..++.|..+|.++|+.+..+....+.
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDG-EVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCC-CCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 34667788999999999999999 665555433221111112 2456777888999999999999998887654221
Q ss_pred -----EEEEeCCCEEEEEcCCeEEEEECCCCcee-eec--CCCC--c-------EEEEEEeCCEEEEEeCCCcEEEEEec
Q 016224 195 -----GCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS--GPVG--Q-------VYAMAVGNDLLFAGTQDGAILAWKFN 257 (393)
Q Consensus 195 -----~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~--~~~~--~-------v~~l~~~~~~l~~~~~dg~I~vwd~~ 257 (393)
.....++.+++...++.+..+|..+++.+ ... .... . .....+..+.+++++.+|.+..+|..
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11223455555567889999999988765 211 1100 0 01122345577788889999999998
Q ss_pred cCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccC-ccceEEEEEcCCEEEEEeCCCcEE
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH-TSVVMSLLCWDQFLLSCSLDKTIK 336 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~l~s~s~dg~i~ 336 (393)
++...++.. +. ....+...++.++.++.++.+..+|..+++.+.....- .....+....+.+|+.++.||.|.
T Consensus 275 tG~~~W~~~--~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~ 348 (394)
T PRK11138 275 SGQIVWKRE--YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLH 348 (394)
T ss_pred CCCEEEeec--CC----CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEE
Confidence 875433221 11 11234556788888999999999999999876554321 122333444578899999999999
Q ss_pred EEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 337 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
+.|..+++.+......... +.+ .|--.++ .|+.++.||.|+.++++
T Consensus 349 ~ld~~tG~~~~~~~~~~~~--~~s---~P~~~~~-~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSG--FLS---EPVVADD-KLLIQARDGTVYAITRP 394 (394)
T ss_pred EEECCCCCEEEEEEcCCCc--cee---CCEEECC-EEEEEeCCceEEEEeCC
Confidence 9999988766554432221 111 1111122 68888999999988764
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=111.83 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=122.7
Q ss_pred eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee-ecCceeeEEEEEEc----CCEEEEecCCCcEE
Q 016224 224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS-LKGHSLAVVSLVVG----ANKLYSGSMDNSIR 296 (393)
Q Consensus 224 ~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~----~~~l~sg~~dg~i~ 296 (393)
.+.+|.+.|.++.|+.+ +|++|+.|-.+.|||.-.. +++.. -.+|...|.++.|- ..++++|..|..|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhc----ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 67899999999999987 9999999999999998754 44444 45799999999884 44799999999999
Q ss_pred EeeCCC----------cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEE--------eecCC
Q 016224 297 VWNLET----------LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTY--------THNEE 355 (393)
Q Consensus 297 iwd~~~----------~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~ 355 (393)
+||+.. .+....+..|...|..|+.. +..+.++++||+|+-+|+++......-. ....-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999984 33456677888888888776 4689999999999999998743211111 11122
Q ss_pred ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 356 ~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
....++..+|..+ .+|+.|+.|--.++||.
T Consensus 201 ielk~ltisp~rp--~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 201 IELKCLTISPSRP--YYLAVGGSDPFARLYDR 230 (758)
T ss_pred heeeeeeecCCCC--ceEEecCCCchhhhhhh
Confidence 3455666776644 48999999999999994
No 227
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.27 E-value=8.5e-09 Score=97.26 Aligned_cols=264 Identities=13% Similarity=0.120 Sum_probs=167.3
Q ss_pred ecCcEEEecCCCeEEEEECCCCcEEEEEecCCc-C---------CEE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-K---------VVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~---------~I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
..+.+++++.++.|.-+|..++ +.+-..+... . .+. .+.. ++..++.++.+|.+..+|.++|+.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTG-KEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCC-cEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 5667788888999999999998 5555443221 0 000 0111 35678888899999999999999988
Q ss_pred EEecCCceEE--EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCc-----EEEEEEeCCEEEEEeCCCcEEEEEecc
Q 016224 187 VINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQ-----VYAMAVGNDLLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 187 ~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~-----v~~l~~~~~~l~~~~~dg~I~vwd~~~ 258 (393)
.......... +..++.+++...++.+..+|.++++.+ ........ ..+-....+.++.++.+|.+..+|..+
T Consensus 145 ~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 145 QTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred cccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence 8876654332 234555555557889999999999977 33221110 011122345777788899999999888
Q ss_pred CCccccCceeec--Cce----eeE-EEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeC
Q 016224 259 TTNCFEPAASLK--GHS----LAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSL 331 (393)
Q Consensus 259 ~~~~~~~~~~~~--~~~----~~v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~ 331 (393)
+...++...... .+. ..+ .+-...++.++.++.++.+..+|..+++.+.+.... ....+...+..|+.++.
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVDGGRIYLVDQ 302 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEECCEEEEEcC
Confidence 754432111000 000 000 111234667888888999999999999887655421 22234556788888999
Q ss_pred CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+|.+..+|..+++.+-........ ...+.... . + +|+.++.||.|++.|..+|++
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v~--~--g-~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHR-LLTAPVLY--N--G-YLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCC-cccCCEEE--C--C-EEEEEeCCCEEEEEECCCCCE
Confidence 999999999887654332211111 01111110 2 2 688899999999999999875
No 228
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=2e-09 Score=99.38 Aligned_cols=178 Identities=20% Similarity=0.250 Sum_probs=136.5
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce----EE----E------------------EeCCCEEEEE-cCCe
Q 016224 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV----GC----M------------------ISEGPWIFIG-VTNF 211 (393)
Q Consensus 159 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~----~~----~------------------~~~~~~l~~~-~~~~ 211 (393)
+|...++|....||.+++|+..+++....+...... .+ + ..+...++-| ..|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345679999999999999999999887777532211 11 1 1133455556 6679
Q ss_pred EEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CC
Q 016224 212 VKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--AN 284 (393)
Q Consensus 212 i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~ 284 (393)
|.+|+...++.. ....|.+.|.++.++.+ .|.+++.|+.+..|+.... ............+.++.+. +.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCCCC
Confidence 999999999876 33579999999999888 8999999999999999876 4556666666666666665 44
Q ss_pred EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-------CCEEEE-EeCCCcEEEEEcCC
Q 016224 285 KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-------DQFLLS-CSLDKTIKVWFATD 342 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~s-~s~dg~i~iwd~~~ 342 (393)
.+++++ +.|++||+++++.+.+|.+|.++|.++.|- |.++++ ...+..+.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 788776 689999999999999999999999999886 456554 45566788887654
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.6e-09 Score=103.38 Aligned_cols=206 Identities=16% Similarity=0.065 Sum_probs=129.2
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCCE
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGPW 203 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~ 203 (393)
..|.+||.... ..+.+..|...+.+.+|+||++.|+..+.+ ..|.+||+.+++.......... ...+.++++.
T Consensus 184 ~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 46889998644 334556677889999999999999988743 4699999988876544333322 2345678887
Q ss_pred EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCCc--EEEEEeccCCccccCceeecCcee
Q 016224 204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGA--ILAWKFNVTTNCFEPAASLKGHSL 274 (393)
Q Consensus 204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg~--I~vwd~~~~~~~~~~~~~~~~~~~ 274 (393)
++.. .++ .|++||+.+++...+..+.......+|+++ .|+..+ .+|. |+++|+..+.. +.+ ...+...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~l-t~~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERL-TFQGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe-ecCCCCc
Confidence 6543 333 699999999887776666666677899987 555444 4555 55555544321 111 1222221
Q ss_pred eEEEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC---CcEEEEEcC
Q 016224 275 AVVSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFAT 341 (393)
Q Consensus 275 ~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d---g~i~iwd~~ 341 (393)
.-.+++.++++|+..+.++ .|.+||+.+++.. .+. +........|+ +++|+..+.+ +.|.++++.
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1234445677777654332 6999999887654 343 22233445566 6666655543 357777774
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=3.7e-10 Score=97.64 Aligned_cols=191 Identities=21% Similarity=0.337 Sum_probs=135.6
Q ss_pred ecceEEeeEecC--cEEEecCCCeEEEEECCCCc---EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~---~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
..+++++.+..+ .++.|-..|++.-+.+...+ ..++....|...|..+.|+...+.+++.+.|..+.---.+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 346777888766 45678888999888766332 4556667899999999999999999999999776544444555
Q ss_pred EEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEEC---CCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224 184 CAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNT---QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~---~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~ 257 (393)
.+..+...........+-.+.++| ..+.|....+ .-+....+.+|...+.+++|.+. .|++|..|..|.+||+.
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 444333222211111111155555 4444444333 33344488999999999999887 99999999999999998
Q ss_pred cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~ 302 (393)
... .....+.+|...|..+..- -..+++++.||.|.+||.+.
T Consensus 228 g~~---g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 GRK---GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCc---ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 764 4456677888888877654 35799999999999999874
No 231
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.23 E-value=1.2e-08 Score=89.16 Aligned_cols=214 Identities=17% Similarity=0.123 Sum_probs=138.0
Q ss_pred CCcEEEEECCCCeEEEEEecCC---ceE-EEE-eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEE
Q 016224 171 DETVRVWDCASGQCAGVINLGG---EVG-CMI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFA 244 (393)
Q Consensus 171 dg~v~iwd~~~~~~~~~~~~~~---~~~-~~~-~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~ 244 (393)
+|+|..||..+|+.+....... ... ... .++.+++...++.+..||..+++.+ ................+.+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v 81 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV 81 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence 6899999999999999997632 222 133 3444444458899999999999877 332211111113556667788
Q ss_pred EeCCCcEEEEEeccCCccccC-ceeecCc-eeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccc-------
Q 016224 245 GTQDGAILAWKFNVTTNCFEP-AASLKGH-SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV------- 315 (393)
Q Consensus 245 ~~~dg~I~vwd~~~~~~~~~~-~~~~~~~-~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~------- 315 (393)
++.++.|+.+|..++...++. ....... ........+.++.++.+..++.|..+|+++|+.+.........
T Consensus 82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 888899999998888654331 1111111 1223345556889999999999999999999998888664422
Q ss_pred ----eEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 316 ----VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 316 ----v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
...+.+.+..++.++.++.+.-+|+.+++.+. ..... ..... .. ..++ .|+.++.++.|..||+.+|+
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w--~~~~~--~~~~~-~~--~~~~-~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLW--SKPIS--GIYSL-PS--VDGG-TLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEE--EECSS---ECEC-EE--CCCT-EEEEEETTTEEEEEETTTTE
T ss_pred ecccccceEEECCEEEEEcCCCeEEEEECCCCCEEE--EecCC--CccCC-ce--eeCC-EEEEEeCCCEEEEEECCCCC
Confidence 13334445588888888864444998887542 11111 12221 11 2233 67777799999999999997
Q ss_pred e
Q 016224 392 I 392 (393)
Q Consensus 392 l 392 (393)
+
T Consensus 234 ~ 234 (238)
T PF13360_consen 234 V 234 (238)
T ss_dssp E
T ss_pred E
Confidence 5
No 232
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.22 E-value=1.4e-08 Score=88.82 Aligned_cols=216 Identities=18% Similarity=0.105 Sum_probs=142.5
Q ss_pred CCCeEEEEECCCCcEEEEEecCC--cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEEEeCCC
Q 016224 127 KCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGP 202 (393)
Q Consensus 127 ~dg~i~vwd~~~~~~~~~~l~~h--~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~ 202 (393)
.+|+|..||..++ +.+....-- .....+. ..+++.++++++.++.|..||..+|+.+..+...... .....++.
T Consensus 1 ~~g~l~~~d~~tG-~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 1 DDGTLSALDPRTG-KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGR 78 (238)
T ss_dssp -TSEEEEEETTTT-EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTE
T ss_pred CCCEEEEEECCCC-CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccc
Confidence 3688999999999 666666431 1222211 2235678888899999999999999999988875442 22455666
Q ss_pred EEEEEcCCeEEEEECCCCcee-e-ecCC-----CCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCcee-
Q 016224 203 WIFIGVTNFVKAWNTQTNTDL-S-LSGP-----VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL- 274 (393)
Q Consensus 203 ~l~~~~~~~i~v~d~~~~~~~-~-~~~~-----~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~- 274 (393)
+++...++.+..+|..+++.+ . .... ........+..+.++++..++.|..+|+.++...++.......-..
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 666677889999999999987 3 2221 1123345556778899998999999999988543221111000001
Q ss_pred ------eEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEE-EEEcCCEEEEEeCCCcEEEEEcCCCcce
Q 016224 275 ------AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS-LLCWDQFLLSCSLDKTIKVWFATDSGNL 346 (393)
Q Consensus 275 ------~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~ 346 (393)
....+.+.++.++.++.++.+..+|+.+++.+.... ...+.. ....+..|+.++.++.|..||+++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 113334445588888888864444999998665333 222333 5556888888889999999999988754
No 233
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=8.7e-10 Score=105.00 Aligned_cols=206 Identities=13% Similarity=0.130 Sum_probs=129.9
Q ss_pred eeecceEEeeEecCc--EEEecC---CCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEE--
Q 016224 107 VIKTDILCRNWVQGN--CMYGEK---CKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVW-- 177 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~~---dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iw-- 177 (393)
.+...+....|++++ +++.+. +..|++||+.++. +.+..+.+|. ..++|+||++.|+.++ .+|.+.||
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEE
Confidence 345578899999885 444432 3479999998772 2344455443 4689999999888764 68876655
Q ss_pred ECCCCeEEEEEecCCc--eEEEEeCCCEEEEE--cCCeEEEEECC--CCceeeecCCCCcEEEEEEeCC--EEEEEeCCC
Q 016224 178 DCASGQCAGVINLGGE--VGCMISEGPWIFIG--VTNFVKAWNTQ--TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG 249 (393)
Q Consensus 178 d~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~--~~~~i~v~d~~--~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg 249 (393)
|+.+++.......... ...+.++++.++.. .++...+|++. .+....+ .+.. ....|+|+ .|+..+.++
T Consensus 278 d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~ 354 (429)
T PRK01742 278 GANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN 354 (429)
T ss_pred ECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC
Confidence 6666654433322222 24456788866644 35667777654 3333222 3333 45678887 666666654
Q ss_pred cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeC--CCcceeeEeccCccceEEEEEcC
Q 016224 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL--ETLQCIQTLTEHTSVVMSLLCWD 323 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~ 323 (393)
+.+||+.++... .+ ...+...-.++++++++|+.++.++.+.+|++ .+++.++.+..|.+.+...+|++
T Consensus 355 -i~~~Dl~~g~~~--~l--t~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 355 -VVKQDLTSGSTE--VL--SSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred -EEEEECCCCCeE--Ee--cCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 666998776421 11 11111122345566889999999998888876 35888888988888888777764
No 234
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.22 E-value=8.5e-10 Score=94.59 Aligned_cols=206 Identities=16% Similarity=0.112 Sum_probs=153.9
Q ss_pred ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeee
Q 016224 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225 (393)
Q Consensus 146 l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~ 225 (393)
+.--..+|+|.+|++|...+|.+-....|.||.....+.-... ..+
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~----------------------------------htl 51 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPA----------------------------------HTL 51 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceec----------------------------------eeh
Confidence 3334579999999999999999999999999987665422111 256
Q ss_pred cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCC
Q 016224 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE 301 (393)
Q Consensus 226 ~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~ 301 (393)
..|...|+.+.|++. .|++++.|..-++|....+ ..+++...+..+....+++.|. ++.|++|+.-..|.||-++
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE 130 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCC-CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence 789999999999987 8999999999999988533 3357777777888899999987 5689999999999999886
Q ss_pred Ccce----eeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcC-----CCc-------c--eEEE--EeecCCccEE
Q 016224 302 TLQC----IQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFAT-----DSG-------N--LEVT--YTHNEEHGVL 359 (393)
Q Consensus 302 ~~~~----~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~-----~~~-------~--~~~~--~~~~~~~~v~ 359 (393)
...- .+.-+.+...|+++.|.+ -+|++|+.|+..+||..- +.. + +..+ ........+.
T Consensus 131 ~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh 210 (361)
T KOG1523|consen 131 QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH 210 (361)
T ss_pred cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence 5322 112235678899999993 478899999999999642 100 0 0000 0013445788
Q ss_pred EEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
.+.|+|.+. .|+-.+.|..|.+=|...
T Consensus 211 ~v~fs~sG~---~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 211 GVLFSPSGN---RLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred eeEeCCCCC---EeeEecCCCceEEeecCC
Confidence 999988766 899899999998877543
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=5.8e-10 Score=109.04 Aligned_cols=189 Identities=17% Similarity=0.254 Sum_probs=148.0
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE-------eCCCEEEEE-cCCeEEEEECCCCc
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-------SEGPWIFIG-VTNFVKAWNTQTNT 221 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~i~v~d~~~~~ 221 (393)
...|..-.+..+...++.+..+..+.+||...+.....+.......... .+.-++++| .-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 3445555666677889999999999999998887777776665432211 133345555 67899999988544
Q ss_pred ee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEe
Q 016224 222 DL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVW 298 (393)
Q Consensus 222 ~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iw 298 (393)
.. .+.+|.+.|.++.++.+ ++++.+.|.++++|++.+.. ......-+|+..+..+.+.++++++++.|-+.++|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~---~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW 243 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE---VLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVW 243 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc---ccCcccccccceeEEEEeccceeEEeccceEEEEE
Confidence 44 68999999999999776 99999999999999999874 23346678999999999999999999999999999
Q ss_pred eCCCcceeeEeccCcc-ceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224 299 NLETLQCIQTLTEHTS-VVMSLLCW--DQFLLSCSLDKTIKVWFATD 342 (393)
Q Consensus 299 d~~~~~~~~~~~~~~~-~v~~l~~~--~~~l~s~s~dg~i~iwd~~~ 342 (393)
+.. ++.+..+..|.. .+..++.. ...++|++.|+.+++||+..
T Consensus 244 ~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 765 555668887765 46777777 34788999999999999854
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.1e-09 Score=99.11 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=124.6
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCC--ceEEEEeCCCE
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGG--EVGCMISEGPW 203 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~ 203 (393)
..|.++|.+. ...+.+..+...+.+.+|+||++.|+..+.+ ..|.+||+.+++......... ....+.++++.
T Consensus 176 ~~L~~~D~dG--~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADG--QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCC--CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 4677777643 3334555678899999999999999887643 359999999887654433332 23455678887
Q ss_pred EEEE--cCCe--EEEEECCCCceeeecCCCCcEEEEEEeCC--EEE-EEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224 204 IFIG--VTNF--VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (393)
Q Consensus 204 l~~~--~~~~--i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v 276 (393)
|+.. .++. |.++|...+....+..+........|+|+ .|+ +...++...+|.+.......+.+ .+.+....-
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~ 332 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTS 332 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCc
Confidence 7643 4554 55556666665566555556677889988 444 44445677777665332111111 122211112
Q ss_pred EEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC-c--EEEEEc
Q 016224 277 VSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK-T--IKVWFA 340 (393)
Q Consensus 277 ~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg-~--i~iwd~ 340 (393)
..+++++++|+..+.++ .|.+||+.+++... +... .......|+ +++|+..+.++ . +.+.++
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 34555678877666544 69999998876543 3322 223455666 66666655443 3 444454
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=6.6e-10 Score=102.13 Aligned_cols=192 Identities=14% Similarity=0.241 Sum_probs=145.8
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeC
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 200 (393)
.+++++....|+-.+++.| +.+..|....+.+.+|..++...+|+.|+.+|.|..||.++...+..+.....+...
T Consensus 147 Dly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~--- 222 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH--- 222 (703)
T ss_pred cEEEeecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCC---
Confidence 5667777888999999999 888889888899999999999999999999999999999988777766543321110
Q ss_pred CCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEE
Q 016224 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278 (393)
Q Consensus 201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~ 278 (393)
........|+++.|+.+ .+++|+.+|.|.|||++.... .+..-.+...+|..
T Consensus 223 -----------------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 223 -----------------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKK 276 (703)
T ss_pred -----------------------ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---eeecccCCccceee
Confidence 11123346999999987 899999999999999999753 22233344567888
Q ss_pred EEEcC----CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc
Q 016224 279 LVVGA----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG 344 (393)
Q Consensus 279 l~~~~----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~ 344 (393)
+.|.. +.+++. ....++|||-.+|+....+..-. .+..+++. ..+++++-.+..+..|=+...+
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 88842 345444 56789999999999988887433 47666665 5688999888888877665544
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=4.3e-10 Score=115.26 Aligned_cols=211 Identities=15% Similarity=0.235 Sum_probs=147.0
Q ss_pred cceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 110 TDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 110 ~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
..+.|+.-.+. ..++|+.||.+++|....+ +.+..+ ..-.+.|+.+.|+.+|+.+..+..||.+.+|.+. .+...
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~-~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG-QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCC-CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 35666655544 4668999999999999887 444433 3344899999999999999999999999999987 33333
Q ss_pred EEecCC-ceEEEEeCCCEEEE-E---cCCeEEEEECCCCc--eeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224 187 VINLGG-EVGCMISEGPWIFI-G---VTNFVKAWNTQTNT--DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 187 ~~~~~~-~~~~~~~~~~~l~~-~---~~~~i~v~d~~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~ 257 (393)
..+.+. ....+..-+..+++ | .++.+.+||..... ......|.+.++++++.|. +|++|+.+|.|++||++
T Consensus 2287 s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred ccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence 333332 22222222233443 3 44599999976443 3345889999999999998 99999999999999999
Q ss_pred cCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-C--ccce----EEEEEc-CCEEEEE
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-H--TSVV----MSLLCW-DQFLLSC 329 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~--~~~v----~~l~~~-~~~l~s~ 329 (393)
.. ++.+.++. +. ...+|++|+..|.|+||++.....++++.. | .+.. ..+... .+.|.+|
T Consensus 2367 qr----ql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsC 2434 (2439)
T KOG1064|consen 2367 QR----QLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSC 2434 (2439)
T ss_pred HH----HHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEe
Confidence 86 33444432 22 456899999999999999999888887753 1 1110 111111 4567777
Q ss_pred eCCCc
Q 016224 330 SLDKT 334 (393)
Q Consensus 330 s~dg~ 334 (393)
+.|++
T Consensus 2435 gad~~ 2439 (2439)
T KOG1064|consen 2435 GADGT 2439 (2439)
T ss_pred cCCCC
Confidence 77763
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1.9e-09 Score=93.41 Aligned_cols=237 Identities=14% Similarity=0.212 Sum_probs=152.5
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEecCCc-------------e--EEEEe---CCCEEE
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-----CAGVINLGGE-------------V--GCMIS---EGPWIF 205 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~-------------~--~~~~~---~~~~l~ 205 (393)
...-|.+|.|...|++||||..+|.|.++.-+... ....++.+.+ + ..+.. ...+|+
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999754322 2222322211 1 11222 234677
Q ss_pred EEcCCeEEEEECCCCcee-------------------------------------eecCCCCcEEEEEEeCC-EEEEEeC
Q 016224 206 IGVTNFVKAWNTQTNTDL-------------------------------------SLSGPVGQVYAMAVGND-LLFAGTQ 247 (393)
Q Consensus 206 ~~~~~~i~v~d~~~~~~~-------------------------------------~~~~~~~~v~~l~~~~~-~l~~~~~ 247 (393)
++.|.+|++|.+...... -...|.-.|.++.++.| ..+....
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 789999999987643210 11346677888999888 5555568
Q ss_pred CCcEEEEEeccCCccccCceeecCc-----eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceee----Ee------
Q 016224 248 DGAILAWKFNVTTNCFEPAASLKGH-----SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQ----TL------ 309 (393)
Q Consensus 248 dg~I~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~----~~------ 309 (393)
|=.|.+|++.-....+..+- ++.+ ..-|++..|++ +.|+-.+..|+|++-|++...+.. .+
T Consensus 184 dLRINLWnlei~d~sFnIVD-IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVD-IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred ceeeeeccccccCCceeEEE-ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 89999999887654433221 1211 23355556654 478888899999999998532211 11
Q ss_pred ------ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC-CCcceEEEEeecCC-------------ccEEEEEeeeCC
Q 016224 310 ------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT-DSGNLEVTYTHNEE-------------HGVLALCGMPDS 367 (393)
Q Consensus 310 ------~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~-------------~~v~~~~~~~~~ 367 (393)
..--..|..+.|+ |+||++-.. -+|++||+. +.+.+.....|... ..-..++|+-+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 1112356777887 678887543 589999994 44555555544311 123445665544
Q ss_pred CCCcEEEEEeCCCeEEEEeCCce
Q 016224 368 EGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 368 ~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
. +++||+..+.++++++..|
T Consensus 342 ~---~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 S---YVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred c---eEecccccceEEEecCCCC
Confidence 4 8999999999999996654
No 240
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=3.7e-10 Score=115.72 Aligned_cols=192 Identities=15% Similarity=0.196 Sum_probs=150.1
Q ss_pred cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEE--E-eCCCEEEEEcCCeEEEEECCCCc
Q 016224 147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCM--I-SEGPWIFIGVTNFVKAWNTQTNT 221 (393)
Q Consensus 147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~--~-~~~~~l~~~~~~~i~v~d~~~~~ 221 (393)
+.|-..|.++.-+|...+-+||+.||.|++|....++.+..+...+.. ..+ . ..+++-++..||.+.+|......
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 345577888888899999999999999999999999888877755442 211 1 24556666799999999999666
Q ss_pred eeeecCCCCcEEEEEEeCCEEEEEe---CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEE
Q 016224 222 DLSLSGPVGQVYAMAVGNDLLFAGT---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIR 296 (393)
Q Consensus 222 ~~~~~~~~~~v~~l~~~~~~l~~~~---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~ 296 (393)
....+.|......+.|-...+++++ .++.+.+||....... ..+. ..|...++++++-++ .|++|+.+|.|+
T Consensus 2285 ~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccc-ceee--eecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 6688889999999999888777764 5688999997654322 2233 668888888877654 799999999999
Q ss_pred EeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEE
Q 016224 297 VWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVT 349 (393)
Q Consensus 297 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 349 (393)
+||++..+++++++. +. ...++++++..|.|+||++.+...+..+
T Consensus 2362 l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999999999888875 22 4678999999999999999876555444
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1e-08 Score=97.46 Aligned_cols=209 Identities=13% Similarity=0.047 Sum_probs=130.4
Q ss_pred eecceEEeeEecCc--EEEe---cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCC--cEEEEEC
Q 016224 108 IKTDILCRNWVQGN--CMYG---EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDE--TVRVWDC 179 (393)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g---~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg--~v~iwd~ 179 (393)
+...+....|++++ +++. ..+..|++|++.++ +.. .+......+...+|+|||+.|+.. +.+| .|.+||+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-CeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 34478889999885 3332 23568999999877 322 222233344568999999988765 4455 5889999
Q ss_pred CCCeEEEEEecCCc--eEEEEeCCCEEEEE-cC-C--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC-C--
Q 016224 180 ASGQCAGVINLGGE--VGCMISEGPWIFIG-VT-N--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-D-- 248 (393)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~-~~-~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~-d-- 248 (393)
.+++.......... ...+.++++.|+.. .+ + .|.++++.++....+...........|+|+ .|+..+. +
T Consensus 275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 98876554443322 23455788877654 32 3 566667877766555544455667888887 5555443 3
Q ss_pred CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCc---EEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS---IRVWNLETLQCIQTLTEHTSVVMSLLCWD 323 (393)
Q Consensus 249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 323 (393)
..|.+||+.++.. ..+. ......-..++.++.+|+..+.++. +.++++ +++....+..|.+.+...+|++
T Consensus 355 ~~I~~~dl~~g~~--~~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 355 QHIAKQDLATGGV--QVLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ceEEEEECCCCCe--EEeC--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 3478888876532 1111 1111222345567888888877764 677777 4666677777777777776653
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1.8e-07 Score=81.91 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=166.7
Q ss_pred ceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecC-CcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCC----
Q 016224 111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG---- 182 (393)
Q Consensus 111 ~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~-h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~---- 182 (393)
.+.-++|++. .++++..|-.|++|+... +....++. -...|++++|-|.+ ..|+.|... -|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 5566778764 344688999999999765 33334442 45789999998854 566666654 6899986432
Q ss_pred eE--------EEEEecC--CceEEEE--eCCCEEEEE--cCCeEEEEECCCCceeeec-CCCCcEEEEEEeCC--EEEEE
Q 016224 183 QC--------AGVINLG--GEVGCMI--SEGPWIFIG--VTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAG 245 (393)
Q Consensus 183 ~~--------~~~~~~~--~~~~~~~--~~~~~l~~~--~~~~i~v~d~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~ 245 (393)
.. ...++.+ ..+..+. .++..++++ .+..|.+||..++..+.+. ...+.+.-+.|+|+ +|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 11 1122222 2333333 467777765 5669999999999888655 45677889999998 99999
Q ss_pred eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE-EEEecCCCcEEEeeCC--Cc-----------ceeeEe
Q 016224 246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK-LYSGSMDNSIRVWNLE--TL-----------QCIQTL 309 (393)
Q Consensus 246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~dg~i~iwd~~--~~-----------~~~~~~ 309 (393)
+-|+..++|+....- ....-.. -.+.|..-.|+ |.+ |++.+..-.|+--... .. .++..+
T Consensus 257 t~davfrlw~e~q~w---t~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSW---TKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred cccceeeeehhcccc---eecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence 999999999655432 1111111 22366666665 443 4444433333221111 10 011111
Q ss_pred c-----cC----ccceEEEEEc--CCEEEEEeCCCc--------EEEEEcCCCcceEEEE-eecCCccEEEEEeeeCCCC
Q 016224 310 T-----EH----TSVVMSLLCW--DQFLLSCSLDKT--------IKVWFATDSGNLEVTY-THNEEHGVLALCGMPDSEG 369 (393)
Q Consensus 310 ~-----~~----~~~v~~l~~~--~~~l~s~s~dg~--------i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 369 (393)
. .. .+...+++|+ |.+|++.-..+. |.+||.+..-.++... +......-..++|.|....
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~ 412 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNE 412 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccC
Confidence 1 11 3456788888 788888765433 6788877655444432 2222223556788887777
Q ss_pred CcEEEEEeCCCeEEEEeC
Q 016224 370 KPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 370 ~~~l~s~s~dg~I~iwd~ 387 (393)
+++|..+=+.|.+.-|++
T Consensus 413 g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 413 GRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CcEEEEEeccCceEeeee
Confidence 778888888899888876
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=6e-09 Score=88.48 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=97.8
Q ss_pred EEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCC-Cccee
Q 016224 233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLE-TLQCI 306 (393)
Q Consensus 233 ~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~-~~~~~ 306 (393)
.++.|++. .++++-.+|.+.+-+..... .+..+..+.|..++...+|+ ++.+++|+.|+.+..||++ .++.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 44555544 78888889998865544432 24455788899888888875 6799999999999999999 34444
Q ss_pred eE-eccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 307 QT-LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 307 ~~-~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
.. .+-|...|.+|..+ +.+|++|+.|..|++||.++..+. +.......+|..+.++|...
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP--l~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP--LFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc--cccCccccceEEEEecchhh
Confidence 44 55788999999888 459999999999999999865543 22233335688888888654
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.09 E-value=2.7e-06 Score=78.65 Aligned_cols=266 Identities=13% Similarity=0.175 Sum_probs=156.6
Q ss_pred EEecCC----CeEEEEEC--CCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC----CCcEEEEECCCC--e--EEEE
Q 016224 123 MYGEKC----KFLHSWTV--GDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----DETVRVWDCASG--Q--CAGV 187 (393)
Q Consensus 123 ~~g~~d----g~i~vwd~--~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----dg~v~iwd~~~~--~--~~~~ 187 (393)
++|+.. +.|++|++ +++ .+.+..+. -......|+++|++++|+++.. ++.|..|++... + .+..
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 445544 78898888 344 12222222 3455677889999999999977 579999988764 3 3333
Q ss_pred Ee-cCCce--EEEEeCCCEEEEE--cCCeEEEEECCCC-ceee---ec-----------CCCCcEEEEEEeCC--EEEE-
Q 016224 188 IN-LGGEV--GCMISEGPWIFIG--VTNFVKAWNTQTN-TDLS---LS-----------GPVGQVYAMAVGND--LLFA- 244 (393)
Q Consensus 188 ~~-~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~~-~~~~---~~-----------~~~~~v~~l~~~~~--~l~~- 244 (393)
.. ..... ..+.+++++|+++ .++.|.++++... .... .. .......++.++|+ ++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 43 22222 2233688888887 5789999999874 3221 11 23456788999998 4444
Q ss_pred EeCCCcEEEEEeccCCccccCceeec-CceeeEEEEEEc--CCEE-EEecCCCcEEEeeCC--Ccc--eeeEeccC----
Q 016224 245 GTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLE--TLQ--CIQTLTEH---- 312 (393)
Q Consensus 245 ~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~--~~~--~~~~~~~~---- 312 (393)
--....|.+|++............+. .....-..+.++ ++++ ++.-.++.|.++++. +++ .++.+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 44556899999987653222222221 122233455554 5565 455568899999988 332 23333211
Q ss_pred --ccceEEEEEc--CCEEEEEe-CCCcEEEEEcC-CCcceEEEEeec-CCccEEEEEeeeCCCCCcEEEEEe-CCCeEEE
Q 016224 313 --TSVVMSLLCW--DQFLLSCS-LDKTIKVWFAT-DSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSC-NDNSVRF 384 (393)
Q Consensus 313 --~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~i 384 (393)
......|.++ +++|+++. .++.|.+|++. ..+.+..+.... .......+.++|++. +|+++. .++.|.+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~---~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR---YLYVANQDSNTVSV 318 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS---EEEEEETTTTEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC---EEEEEecCCCeEEE
Confidence 1145667776 77766654 57789999994 334444433322 233467788877654 666665 6789999
Q ss_pred EeC--Cceee
Q 016224 385 YDL--PSVII 392 (393)
Q Consensus 385 wd~--~s~~l 392 (393)
|++ .+|+|
T Consensus 319 f~~d~~tG~l 328 (345)
T PF10282_consen 319 FDIDPDTGKL 328 (345)
T ss_dssp EEEETTTTEE
T ss_pred EEEeCCCCcE
Confidence 976 46654
No 245
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=4e-10 Score=103.16 Aligned_cols=271 Identities=15% Similarity=0.195 Sum_probs=180.2
Q ss_pred cceeecceEEeeEe--cCcEEEecCCCeEEEEECCCC------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224 105 RAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176 (393)
Q Consensus 105 ~~~~~~~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i 176 (393)
.+.|...|..++-. .+.+++++.|++|++|.+... ..+..+++.|+.+|.++.|-.+-++++++ ||.|.+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 44555566655443 346778999999999998732 13677889999999999999888888765 789999
Q ss_pred EECCCCeEEEEEec------CCceEEEEe-CCCEEEEE--cCCeEEEEECCCCcee---e---ecCCCCcEEEEEEeCC-
Q 016224 177 WDCASGQCAGVINL------GGEVGCMIS-EGPWIFIG--VTNFVKAWNTQTNTDL---S---LSGPVGQVYAMAVGND- 240 (393)
Q Consensus 177 wd~~~~~~~~~~~~------~~~~~~~~~-~~~~l~~~--~~~~i~v~d~~~~~~~---~---~~~~~~~v~~l~~~~~- 240 (393)
||.--++.+..+.. ...+.++.. +..++.++ ...+|+++|.+..+.. . ..+....+.++++.+.
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 99877776654322 123444444 45555555 6679999999987754 1 2345567888888665
Q ss_pred -EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEE-EcCCEEEEecCCCcEEE-eeCCCcceeeEeccCccceE
Q 016224 241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLYSGSMDNSIRV-WNLETLQCIQTLTEHTSVVM 317 (393)
Q Consensus 241 -~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~l~sg~~dg~i~i-wd~~~~~~~~~~~~~~~~v~ 317 (393)
.++++-.+|.|.+.|.+++. .+............++ ++...++....|.++.+ |-.-++......+....+..
T Consensus 889 N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 889 NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 99999999999999999883 3333332222223332 34556777778899998 98777766666555444444
Q ss_pred EEEEcCCEEEEEeCCCcEEEEEcCCC----cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224 318 SLLCWDQFLLSCSLDKTIKVWFATDS----GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (393)
Q Consensus 318 ~l~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i 384 (393)
-+.-.|.-|+++.....+.+|--... ..+..+.........++++-.|-.. -++.|.+.|.|.+
T Consensus 965 flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~---afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC---AFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc---hhhccCCCCceee
Confidence 44434667888877778888843211 1112223333344566676666544 5777888888875
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=7.9e-09 Score=89.58 Aligned_cols=238 Identities=22% Similarity=0.260 Sum_probs=162.7
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE-CCCCeEEEEEec--CCceEEE--EeCCCEEEEE-cCCeEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD-CASGQCAGVINL--GGEVGCM--ISEGPWIFIG-VTNFVKA 214 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd-~~~~~~~~~~~~--~~~~~~~--~~~~~~l~~~-~~~~i~v 214 (393)
.+++.++||.+.|++...-|-.+-+++.+.|.+++||- .+.++.-..+.+ +.+..++ ..+...|+++ ..+++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 56778899999999999988888899999999999995 444554444433 3333333 3577788888 4457777
Q ss_pred EECCCCc----ee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCce--eeEEEEEEcCCE
Q 016224 215 WNTQTNT----DL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANK 285 (393)
Q Consensus 215 ~d~~~~~----~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~ 285 (393)
+.+...- .. ....|...|..+-|+.. .+++.+.|..+.---.+.+.. +.++. ....++.++-.+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~-------lg~Y~~~~~~t~~~~d~~~ 167 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR-------LGGYNFETPASALQFDALY 167 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc-------ccceEeeccCCCCceeeEE
Confidence 7654321 11 45678899999998755 888888888775444443321 11111 011111222115
Q ss_pred EEEecCCCcEEEeeC--CCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEE
Q 016224 286 LYSGSMDNSIRVWNL--ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLA 360 (393)
Q Consensus 286 l~sg~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~ 360 (393)
...|...|.|.+-.+ ....++.++.+|...++++.|+ ...|.+|..|..+.+||+.-... ......|.. .|..
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~ 245 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQA 245 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhh
Confidence 566666676666544 4567899999999999999999 56899999999999999964332 233344444 3667
Q ss_pred EEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
+.+.+... .+++++.||.|.+|++...
T Consensus 246 l~~~~~t~---~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 246 LSYAQHTR---QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhe---eeeeccCCCeEEEEeccce
Confidence 76666555 7999999999999998753
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=1.8e-08 Score=87.49 Aligned_cols=237 Identities=10% Similarity=0.184 Sum_probs=153.9
Q ss_pred ceeecceEEeeEec--CcEEEecCCCeEEEEECCCC----cEEEEEecCCc------------CCEEEEEecCCC--CEE
Q 016224 106 AVIKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQ------------KVVSGITLPSGS--DKL 165 (393)
Q Consensus 106 ~~~~~~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~----~~~~~~l~~h~------------~~I~~i~~s~~~--~~l 165 (393)
.....-|.|+.|.. +.+++|..+|.|.++.-+.. +.....++.|. ..|..|.|.+++ ..+
T Consensus 22 vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred echhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 33344678888864 45778999999999975433 22555666664 568889997755 466
Q ss_pred EEEeCCCcEEEEECCCCeEEE---------------EEec------C----------------CceEE--EEeCCCEEEE
Q 016224 166 YSGSKDETVRVWDCASGQCAG---------------VINL------G----------------GEVGC--MISEGPWIFI 206 (393)
Q Consensus 166 ~s~s~dg~v~iwd~~~~~~~~---------------~~~~------~----------------~~~~~--~~~~~~~l~~ 206 (393)
+....|.+|++|.+....... .++. . -.+.+ +-++...+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 777889999999886432111 0100 0 01111 1246777777
Q ss_pred EcCCeEEEEECCCCc-e---eee-----cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceee-----
Q 016224 207 GVTNFVKAWNTQTNT-D---LSL-----SGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL----- 269 (393)
Q Consensus 207 ~~~~~i~v~d~~~~~-~---~~~-----~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~----- 269 (393)
+.|=.|.+|+++--. . +-+ .....-|++..|+|. .|+-.+..|+|++.|++....+-.....+
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 788899999986432 1 122 223345788889886 88889999999999999654321111111
Q ss_pred -------cCceeeEEEEEEc--CCEEEEecCCCcEEEeeC-CCcceeeEeccCcc------------ce---EEEEEcCC
Q 016224 270 -------KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNL-ETLQCIQTLTEHTS------------VV---MSLLCWDQ 324 (393)
Q Consensus 270 -------~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~------------~v---~~l~~~~~ 324 (393)
.+--..|..+.|+ |+++++-. --+|++||+ ...+++.+++.|.. .| ..++|+|+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112345666665 56777654 368999999 45677777776642 12 45667755
Q ss_pred --EEEEEeCCCcEEEEEcCCC
Q 016224 325 --FLLSCSLDKTIKVWFATDS 343 (393)
Q Consensus 325 --~l~s~s~dg~i~iwd~~~~ 343 (393)
+++||+....++++++..+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cceEecccccceEEEecCCCC
Confidence 9999999999999995433
No 248
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=8.6e-08 Score=91.62 Aligned_cols=206 Identities=12% Similarity=0.016 Sum_probs=130.6
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCCc--eEEEEeCCCE
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGGE--VGCMISEGPW 203 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~ 203 (393)
..|.+||.+.. ..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.......... ...+.++++.
T Consensus 182 ~~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 47888887544 44556678889999999999999988764 46899999998876544333332 2345678887
Q ss_pred EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCC--cEEEEEeccCCccccCceeecCcee
Q 016224 204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDG--AILAWKFNVTTNCFEPAASLKGHSL 274 (393)
Q Consensus 204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg--~I~vwd~~~~~~~~~~~~~~~~~~~ 274 (393)
|+.. .++ .|.+||+.++....+..+........|+|+ .|+..+ .+| .|+++|+..+.. ..+..+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----RRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----EEeecCCC
Confidence 6543 333 688889999887777777767778899988 555444 444 577777665421 22221222
Q ss_pred eEEE--EEEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC------CcEEEEEcC
Q 016224 275 AVVS--LVVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD------KTIKVWFAT 341 (393)
Q Consensus 275 ~v~~--l~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d------g~i~iwd~~ 341 (393)
.+.. ++.++++|+....+ ..|.+||+.++.. ..+.. ...+....|+ +++|+..+.+ ..|.++|+.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 2333 44467777665433 3688899865443 33332 2234556666 5666654432 257777775
Q ss_pred CC
Q 016224 342 DS 343 (393)
Q Consensus 342 ~~ 343 (393)
..
T Consensus 413 g~ 414 (435)
T PRK05137 413 GR 414 (435)
T ss_pred CC
Confidence 43
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.05 E-value=3.3e-08 Score=83.21 Aligned_cols=130 Identities=14% Similarity=0.252 Sum_probs=88.7
Q ss_pred CcEEEEEeccCCccccCceeec-CceeeEEEEEEcC--CEE--EEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-
Q 016224 249 GAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGA--NKL--YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW- 322 (393)
Q Consensus 249 g~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~--~~l--~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~- 322 (393)
+...+|.++.... +...+. ....+|.+++|++ +.| +.|..+..|.+||++ ++.+..+. ...+..+.|+
T Consensus 37 ~~~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP 110 (194)
T PF08662_consen 37 GEFELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP 110 (194)
T ss_pred eeEEEEEEecCCC---ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC
Confidence 3455666644432 222222 2344699999974 454 345567899999997 67777764 4567888888
Q ss_pred -CCEEEEEeC---CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC------CCeEEEEeCCcee
Q 016224 323 -DQFLLSCSL---DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSVI 391 (393)
Q Consensus 323 -~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~------dg~I~iwd~~s~~ 391 (393)
|++|++++. .|.|.+||.++.+.+.... ...+..+.|+|++. +|+++.. |+.++||++....
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsPdGr---~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSPDGR---YLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcCCCC---EEEEEEeccceeccccEEEEEecCeE
Confidence 689988875 4679999998655543322 22478899998877 8888764 7899999986443
No 250
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=2.8e-08 Score=86.81 Aligned_cols=187 Identities=21% Similarity=0.237 Sum_probs=125.6
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCC
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV 229 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~ 229 (393)
+..+..++|++.-..+|++..|-.|++||-.. ++...++ ....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk------------------------------------s~sQ 140 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK------------------------------------SVSQ 140 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec------------------------------------chhh
Confidence 34677788888777788888888899888655 2222221 2235
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccC----------ceeecCceeeEEEEEEc--CCEEEEec-CCC
Q 016224 230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP----------AASLKGHSLAVVSLVVG--ANKLYSGS-MDN 293 (393)
Q Consensus 230 ~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~----------~~~~~~~~~~v~~l~~~--~~~l~sg~-~dg 293 (393)
..|++++|-|. .|++|+..| |.+|........... +....+| ..|+++.|+ +..+++++ .|.
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 67899999876 788887665 889976543221111 1223344 688999996 55777777 467
Q ss_pred cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371 (393)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 371 (393)
.|.|||..++..+.-..-..+.+.-+.|+ +++|+++.-|+..++|........+..... ...+..-+|+|.+. .
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGs--f 294 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGS--F 294 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc--CCceeeeeecCCCC--E
Confidence 99999999988766554456677888888 679999999999999965433222222211 22688889998865 2
Q ss_pred EEEEEeCC
Q 016224 372 VLLCSCND 379 (393)
Q Consensus 372 ~l~s~s~d 379 (393)
+|++.+..
T Consensus 295 LLf~~sgs 302 (445)
T KOG2139|consen 295 LLFACSGS 302 (445)
T ss_pred EEEEEcCC
Confidence 44554433
No 251
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=4.3e-08 Score=93.56 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=124.7
Q ss_pred eecceEEeeEecCc--EEEec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCC--cEEEEEC
Q 016224 108 IKTDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDE--TVRVWDC 179 (393)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg--~v~iwd~ 179 (393)
+...+....|++++ +++.+ ....|++||+.++ +. ..+..+.....+.+|+||++.|+ +.+.+| .|.+||+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g-~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG-QR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC-CE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 44577888999874 44444 3347999999877 32 23333445556789999998775 555665 5999999
Q ss_pred CCCeEEEEEecCC--ceEEEEeCCCEEEEEc--CC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC-C-
Q 016224 180 ASGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD-G- 249 (393)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~--~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d-g- 249 (393)
.+++......... ....+.++++.++... ++ .|.++++.+++...+..........+|+|+ .++..+.+ +
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCc
Confidence 9887654333222 1235567888777553 23 577778877765544433344556889887 55554433 2
Q ss_pred -cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC---CCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 250 -AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM---DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 250 -~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
.|.+||+.++.. ..+. .+....-..++.++++++..+. ...|.++|+. +.....+..+.+.+...+|+
T Consensus 360 ~~I~v~d~~~g~~--~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 360 YRIAVMDLSTGSV--RTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred eeEEEEECCCCCe--EECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccC
Confidence 589999876532 1111 1111111234455776665554 3468888885 44455565555555555544
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=92.82 Aligned_cols=217 Identities=11% Similarity=0.069 Sum_probs=145.9
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE--EEEeCCCEEEEE--cCCeEEEEECCCCcee-eecCCCC
Q 016224 156 ITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIG--VTNFVKAWNTQTNTDL-SLSGPVG 230 (393)
Q Consensus 156 i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~~~~ 230 (393)
..|||+|+++|+++.- .+.|-|.++-+..+.+..-..+. -+..+..+++++ .++.|.+|++...+-. .+.....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 5799999999999876 78888888776655444333332 233566666665 6779999999988876 7788888
Q ss_pred cEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---cEEEeeCCCcc
Q 016224 231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---SIRVWNLETLQ 304 (393)
Q Consensus 231 ~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~ 304 (393)
.+.+++|+|+ +|.+...+-+|.+|.+.+.... ......|.....++..++++.+..+.-. .+.|......+
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~---~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY---LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeE---EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 9999999998 7888889999999999886421 1122234444555555677766665421 22333333445
Q ss_pred eeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224 305 CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (393)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i 384 (393)
.+..++..+-..+.+.|+++ +..+.+||.--..++ .......++..+.|+|.++ +|+.|+.|+.+|+
T Consensus 170 ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Leykv---~aYe~~lG~k~v~wsP~~q---flavGsyD~~lrv 236 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLEYKV---YAYERGLGLKFVEWSPCNQ---FLAVGSYDQMLRV 236 (447)
T ss_pred HHHhcCCCcccccCceECCC-------CcEEEEecchhhhee---eeeeeccceeEEEeccccc---eEEeeccchhhhh
Confidence 56666666666788888743 345667774322221 1222234577888888766 9999999999998
Q ss_pred EeCCc
Q 016224 385 YDLPS 389 (393)
Q Consensus 385 wd~~s 389 (393)
-+--+
T Consensus 237 lnh~t 241 (447)
T KOG4497|consen 237 LNHFT 241 (447)
T ss_pred hceee
Confidence 66433
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.01 E-value=4.2e-08 Score=83.45 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=102.3
Q ss_pred EEEEEeCCCcEEEEEeccCCcc--ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce--eeEeccCcc
Q 016224 241 LLFAGTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTS 314 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~ 314 (393)
.++-+...|.|.++........ ++++...+-......++.|+ +..++++-.+|.+.+-+.....+ +++++.|.-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 6677778888988876543211 11111111111122344443 66899999999999777665544 448899999
Q ss_pred ceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 315 VVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 315 ~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
......|+ ++.+.+|+.|+.+..||++..+.........+..+|.++..+|. ...+|+||+.|..|++||.++.
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~--~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP--KPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC--CCceEEEeccccceeeeehhcc
Confidence 99988887 67999999999999999995553322223334456888877765 3459999999999999999854
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.00 E-value=1.4e-07 Score=89.78 Aligned_cols=197 Identities=13% Similarity=0.027 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCC
Q 016224 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGP 202 (393)
Q Consensus 128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~ 202 (393)
...|.++|.... ..+.+..+...+...+|+||+++|+.+..+ ..|.+||+.+++.......... ...+.++++
T Consensus 169 ~~~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 346888887543 234455577789999999999999987654 4799999998865544433322 234557887
Q ss_pred EEEEE--cC--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCC--cEEEEEeccCCccccCceeecCce
Q 016224 203 WIFIG--VT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDG--AILAWKFNVTTNCFEPAASLKGHS 273 (393)
Q Consensus 203 ~l~~~--~~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg--~I~vwd~~~~~~~~~~~~~~~~~~ 273 (393)
.++.. .+ ..|++|++.++....+..+........|+++ .|+..+ .++ .|+++|+..+. ...+..+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l~~~~ 321 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-----VRRLTFRG 321 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEeecCC
Confidence 66643 23 3699999998877666655555556788887 554443 344 46667765542 12222222
Q ss_pred eeEEEEEE--cCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC
Q 016224 274 LAVVSLVV--GANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK 333 (393)
Q Consensus 274 ~~v~~l~~--~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg 333 (393)
.......+ ++++++..+.++ .|.+||+.++.. ..+.... ......|+ +++|+..+.++
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC-CCCCceECCCCCEEEEEEeCC
Confidence 33334444 567777777665 789999987543 3332221 22233444 66776666543
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.4e-07 Score=83.79 Aligned_cols=265 Identities=10% Similarity=0.093 Sum_probs=157.3
Q ss_pred eEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-----eCC-----CcEEEEECC
Q 016224 112 ILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-----SKD-----ETVRVWDCA 180 (393)
Q Consensus 112 i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-----s~d-----g~v~iwd~~ 180 (393)
....++++++ ++.-+.+..+.|++.... ..+.+...- .++++.|+|-+.+|.|= ..+ ..+++|+++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~-~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATL-KVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCC-cEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 4455666664 556677788999998887 333333322 78999999999998763 122 357799999
Q ss_pred CCeEEEEEecCCce--EEEEeCCCEEEE-EcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEE-----EeCC
Q 016224 181 SGQCAGVINLGGEV--GCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFA-----GTQD 248 (393)
Q Consensus 181 ~~~~~~~~~~~~~~--~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~-----~~~d 248 (393)
++.....+...... ..-++....+++ -..+.+++|+....+...-.-|...|..+.++|. .+++ .+.-
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 86555544433222 111122222222 3555677777666444433344555555555543 2222 1222
Q ss_pred CcEEEEEeccCCcc-----------------------------------------------------ccCceeecCceee
Q 016224 249 GAILAWKFNVTTNC-----------------------------------------------------FEPAASLKGHSLA 275 (393)
Q Consensus 249 g~I~vwd~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~ 275 (393)
..|++|........ ...... -...++
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k~GP 272 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-LLKEGP 272 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-cCCCCC
Confidence 33555543310000 000011 112567
Q ss_pred EEEEEEcCC--E--EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC---CCcEEEEEcCCCcce
Q 016224 276 VVSLVVGAN--K--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL---DKTIKVWFATDSGNL 346 (393)
Q Consensus 276 v~~l~~~~~--~--l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~~~ 346 (393)
|.++.|+.+ . ++-|-+--++.|||++ +.++..+ ..++-+++.|+ |++|+.++. -|.+-|||+.+.+.+
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 778888643 2 4456677788888876 5555555 45666777777 778877776 488999999886655
Q ss_pred EEEEeecCCccEEEEEeeeCCCCCcEEEEEeC------CCeEEEEeCCce
Q 016224 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSV 390 (393)
Q Consensus 347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~------dg~I~iwd~~s~ 390 (393)
..+... ..+-+.|+|+++ +|+|++. |+.++||++..-
T Consensus 350 ~~~~a~----~tt~~eW~PdGe---~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 AKFKAA----NTTVFEWSPDGE---YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cccccC----CceEEEEcCCCc---EEEEEeccccEEecCCeEEEEecCc
Confidence 544432 355688888877 8888764 788999998643
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.9e-07 Score=89.20 Aligned_cols=205 Identities=14% Similarity=0.091 Sum_probs=123.6
Q ss_pred eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCCEE
Q 016224 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGPWI 204 (393)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~l 204 (393)
.|.++|.+.+ . .+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++.......... ...+.++++.|
T Consensus 180 ~l~~~d~~g~-~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGA-R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCC-C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEE
Confidence 4777787654 3 34455677889999999999999876644 3689999998876544333322 34556788877
Q ss_pred EEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCC--cEEEEEeccCCccccCceeecCceee
Q 016224 205 FIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLA 275 (393)
Q Consensus 205 ~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg--~I~vwd~~~~~~~~~~~~~~~~~~~~ 275 (393)
+.. .++ .|.++|+.+++...+..+........|+|+ .| ++...++ .|+++|+..+.. +.+ ...+....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~l-t~~~~~~~ 334 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ERV-TFVGNYNA 334 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEe-ecCCCCcc
Confidence 643 333 788999999887766666666677889887 44 4444444 466666655431 111 11222222
Q ss_pred EEEEEEcCCEEEEecC-CC--cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC-CC--cEEEEEcC
Q 016224 276 VVSLVVGANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DK--TIKVWFAT 341 (393)
Q Consensus 276 v~~l~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg--~i~iwd~~ 341 (393)
...++.+++.|+..+. ++ .|.+||+.+++. ..+.. ........|+ +++++..+. ++ .|.++++.
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2344556777665553 33 588899988764 33321 1111233444 666665544 33 35566663
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.98 E-value=4.8e-08 Score=82.17 Aligned_cols=127 Identities=11% Similarity=0.184 Sum_probs=88.7
Q ss_pred EEEEECCCCcEEEEEecC-CcCCEEEEEecCCCCEEEEE--eCCCcEEEEECCCCeEEEEEecCC-ceEEEEeCCCEEEE
Q 016224 131 LHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGG-EVGCMISEGPWIFI 206 (393)
Q Consensus 131 i~vwd~~~~~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 206 (393)
..+|.++........+.- ..++|.+++|+|+++.||+. ..+..|.+||++ ++.+..+.... ....+.++|+++++
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~ 117 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVL 117 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEE
Confidence 444444322133444433 34579999999999987654 467899999996 66666665432 23455689998887
Q ss_pred Ec----CCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC------CCcEEEEEeccC
Q 016224 207 GV----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ------DGAILAWKFNVT 259 (393)
Q Consensus 207 ~~----~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~------dg~I~vwd~~~~ 259 (393)
+. .|.|.+||.++.+.+....|. .+..++|+|+ +|++++. |..++||++...
T Consensus 118 ~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 118 AGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 52 457999999988877655555 4789999999 7776654 788899998643
No 258
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=4.3e-08 Score=86.83 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=108.3
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCce--EEEE-eCCCEEEEE---cCCeEEEEECCCCceee
Q 016224 155 GITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEV--GCMI-SEGPWIFIG---VTNFVKAWNTQTNTDLS 224 (393)
Q Consensus 155 ~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~--~~~~-~~~~~l~~~---~~~~i~v~d~~~~~~~~ 224 (393)
.+..++++++||.+..+....++++.... ........... ..+. .+...+++- ....+.+|....+....
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 34456677777777777666666654432 33333333222 2222 344444443 33466777777677778
Q ss_pred ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC-EEEEecCCCcEEEeeCC
Q 016224 225 LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLE 301 (393)
Q Consensus 225 ~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~ 301 (393)
+.+|...++.+++++| +++++..|..|++-.+.... ....-..+|...|..++.-.+ .|++++.|++|++||++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence 8999999999999998 99999999999998766542 333445689999999998755 57999999999999999
Q ss_pred CcceeeEec
Q 016224 302 TLQCIQTLT 310 (393)
Q Consensus 302 ~~~~~~~~~ 310 (393)
+++++.++.
T Consensus 224 sgk~L~t~d 232 (390)
T KOG3914|consen 224 SGKLLDTCD 232 (390)
T ss_pred cCCcccccc
Confidence 999987764
No 259
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=2e-07 Score=89.12 Aligned_cols=193 Identities=10% Similarity=-0.005 Sum_probs=119.7
Q ss_pred eeecceEEeeEecCc--EEEec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCCc--EEEEE
Q 016224 107 VIKTDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDET--VRVWD 178 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg~--v~iwd 178 (393)
.+...+.+..|++++ +++.+ .+..|++||+.++ +. ..+..+...+...+|+|||+.|+ +.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-QR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-cE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 455688999999884 34433 3568999999887 33 34555677788899999998775 5566655 77779
Q ss_pred CCCCeEEEEEecCCc--eEEEEeCCCEEEEEcC----CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC--
Q 016224 179 CASGQCAGVINLGGE--VGCMISEGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD-- 248 (393)
Q Consensus 179 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~----~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d-- 248 (393)
+.+++.......... ...+.++++.++...+ ..|.++|+.++....+......+....|+|+ .|+....+
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence 888776543333221 2445678887765432 2788899888776655555556677889988 55554432
Q ss_pred -CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC------CcEEEeeCCCcce
Q 016224 249 -GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD------NSIRVWNLETLQC 305 (393)
Q Consensus 249 -g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d------g~i~iwd~~~~~~ 305 (393)
..|.+||+..+.. ..+. ......-..++.+++.|+..+.+ ..|.++|+..+..
T Consensus 357 ~~~i~~~d~~~~~~--~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 357 QFSIGVMKPDGSGE--RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred ceEEEEEECCCCce--Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 3577888754321 1111 11211222344456666554332 3577888765443
No 260
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.4e-09 Score=99.69 Aligned_cols=213 Identities=16% Similarity=0.218 Sum_probs=143.2
Q ss_pred EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCC
Q 016224 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220 (393)
Q Consensus 142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~ 220 (393)
.+..+.+|+..|..++--.+.+-+++++.|++|++|.+... ..+.+ ..
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-------------------------------sa 775 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-------------------------------SA 775 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-------------------------------ce
Confidence 34577899999999988778889999999999999998642 11110 01
Q ss_pred ceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCce-eecCceeeEEEEEE-cCCEEEEe-cCCCcEEE
Q 016224 221 TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAA-SLKGHSLAVVSLVV-GANKLYSG-SMDNSIRV 297 (393)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~-~~~~~~~~v~~l~~-~~~~l~sg-~~dg~i~i 297 (393)
...+...|..+|.++.|-.+.-..++.||.|.+||.-.+....+... .-.+..+.|.++.- +...+++| +...+|++
T Consensus 776 CQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 776 CQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred eeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence 12366789999999999888656667799999999766532111111 11223345566543 33444444 78899999
Q ss_pred eeCCCcceeeEecc-----CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224 298 WNLETLQCIQTLTE-----HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (393)
Q Consensus 298 wd~~~~~~~~~~~~-----~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 370 (393)
+|.+.++....++. ....+.+++.. |+.++++-..|.|.+.|.+++..+.......-+ .+.++ .+..
T Consensus 856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd--llqla----apsd 929 (1034)
T KOG4190|consen 856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD--LLQLA----APSD 929 (1034)
T ss_pred eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch--hhhhc----Cchh
Confidence 99999887776653 34556666665 889999999999999999988765544332222 33332 2223
Q ss_pred cEEEEEeCCCeEEE-EeCCcee
Q 016224 371 PVLLCSCNDNSVRF-YDLPSVI 391 (393)
Q Consensus 371 ~~l~s~s~dg~I~i-wd~~s~~ 391 (393)
+.|+....|.++.+ |..-++.
T Consensus 930 q~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 930 QALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred HHHHhhcccceeEeeehhcCCe
Confidence 36676667777777 7655543
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.94 E-value=1.2e-05 Score=74.48 Aligned_cols=229 Identities=14% Similarity=0.182 Sum_probs=139.0
Q ss_pred EEeeEecCc--EEEec----CCCeEEEEECCC--C-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCC-
Q 016224 113 LCRNWVQGN--CMYGE----KCKFLHSWTVGD--G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCAS- 181 (393)
Q Consensus 113 ~c~~~~~~~--~~~g~----~dg~i~vwd~~~--~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~- 181 (393)
..+.+++++ +++.. ..+.|..|.+.. + .+.+.+.......-..++++|++++|+++.. +|.|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 455665542 33322 467898888765 3 2344444434456667999999999999874 89999999987
Q ss_pred CeEEEE---Eec-----------CCc--eEEEEeCCCEEEEE--cCCeEEEEECCCCc--ee---e-ecCCCCcEEEEEE
Q 016224 182 GQCAGV---INL-----------GGE--VGCMISEGPWIFIG--VTNFVKAWNTQTNT--DL---S-LSGPVGQVYAMAV 237 (393)
Q Consensus 182 ~~~~~~---~~~-----------~~~--~~~~~~~~~~l~~~--~~~~i~v~d~~~~~--~~---~-~~~~~~~v~~l~~ 237 (393)
+..... +.. ... ...+.++++++++. ..+.|.+|++.... .. . ..........+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 443332 211 112 23445788988886 44589999997765 21 1 2345567889999
Q ss_pred eCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc------eeeEEE--EEEcCCEEEEe-cCCCcEEEeeCC--Cc
Q 016224 238 GND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH------SLAVVS--LVVGANKLYSG-SMDNSIRVWNLE--TL 303 (393)
Q Consensus 238 ~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~------~~~v~~--l~~~~~~l~sg-~~dg~i~iwd~~--~~ 303 (393)
+++ .+++.-.++.|.++++......++.+...... ...... ++.++++|+++ ..++.|.+|++. ++
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 998 45566678889999998433222222222111 112334 44457776654 467899999983 23
Q ss_pred --ceeeEeccCccceEEEEEc--CCEEEEEe-CCCcEEEEEcC
Q 016224 304 --QCIQTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFAT 341 (393)
Q Consensus 304 --~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~ 341 (393)
+.+..+......-..+.++ +++|+++. .++.|.+|++.
T Consensus 280 ~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 280 TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3344444333445677775 78888776 56789999874
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=2.9e-08 Score=83.01 Aligned_cols=189 Identities=19% Similarity=0.245 Sum_probs=124.3
Q ss_pred ceEEeeEecCc-EEEecCCCeEEEEECC-----------CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224 111 DILCRNWVQGN-CMYGEKCKFLHSWTVG-----------DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (393)
Q Consensus 111 ~i~c~~~~~~~-~~~g~~dg~i~vwd~~-----------~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd 178 (393)
.+..+.++.+. ++.+..++.+...... .+....+.+..|+++=.+-+.+--++.++++..||.+.+++
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 36666666553 4456666655554433 22233444444554444444444567899999999999999
Q ss_pred CCCCe----EEEEEecCCceEEEEeCCCEEEEE------cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEE
Q 016224 179 CASGQ----CAGVINLGGEVGCMISEGPWIFIG------VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFA 244 (393)
Q Consensus 179 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~------~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~ 244 (393)
.+.-. .+..........+....+.++.++ .-+..+.|+++..+.+ ........|.+++-+|. ++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 76521 111222222333444555555554 3346677777766554 22223334888888876 8999
Q ss_pred EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC
Q 016224 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET 302 (393)
Q Consensus 245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~ 302 (393)
|+.||.+-+||.+... -+...+..|..++..+.|. +..|+++++||.+..||..+
T Consensus 198 gt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999999874 5567788899999999986 56899999999999999875
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.4e-07 Score=88.65 Aligned_cols=226 Identities=12% Similarity=0.001 Sum_probs=127.5
Q ss_pred eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEecCC--ceEEEEeCCCEE
Q 016224 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-E--TVRVWDCASGQCAGVINLGG--EVGCMISEGPWI 204 (393)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~l 204 (393)
.|.++|.+.. .. +.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++......... ....+.++++.|
T Consensus 199 ~l~i~d~dG~-~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGY-NE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCC-Cc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 6677776544 22 3455567788999999999998876543 2 58889998886544332222 234566788877
Q ss_pred EEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCc--EEEEEeccCCccccCceeecCceee
Q 016224 205 FIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGA--ILAWKFNVTTNCFEPAASLKGHSLA 275 (393)
Q Consensus 205 ~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~--I~vwd~~~~~~~~~~~~~~~~~~~~ 275 (393)
+.. .++ .|.++|+.+++...+..+........|+|+ .| ++...++. |+++|+.++.. +.+ ...++...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~L-t~~g~~~~ 353 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRL-TFEGEQNL 353 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEE-ecCCCCCc
Confidence 643 344 588889998887766666666778889988 44 44444555 55555554421 111 12222221
Q ss_pred EEEEEEcCCEEEEecC-CC--cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe-CCCc--EEEEEcCCCcceE
Q 016224 276 VVSLVVGANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-LDKT--IKVWFATDSGNLE 347 (393)
Q Consensus 276 v~~l~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~--i~iwd~~~~~~~~ 347 (393)
-..++.++++|+..+. ++ .|.++|+.+++.. .+.... ......|+ +++|+..+ .++. +.+++. ++....
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~ 430 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKA 430 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceE
Confidence 2244556777665543 34 4566788877643 332221 11122344 66655444 3443 666666 344434
Q ss_pred EEEeecCCccEEEEEeee
Q 016224 348 VTYTHNEEHGVLALCGMP 365 (393)
Q Consensus 348 ~~~~~~~~~~v~~~~~~~ 365 (393)
.+..... .+....|+|
T Consensus 431 ~l~~~~g--~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQG--EVKSPAWSP 446 (448)
T ss_pred ECcCCCC--CcCCCccCC
Confidence 3333222 234455544
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=5.4e-07 Score=75.90 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=138.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCc-e---E-EEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEE
Q 016224 162 SDKLYSGSKDETVRVWDCASGQCAGVIN-LGGE-V---G-CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYA 234 (393)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~-~---~-~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~ 234 (393)
-.+||.|+..|...+|.+.+.+....+- .... + . ......+++.++.|.++++.++..+... ......-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 3589999999999999998765433322 1111 1 1 1123455667778888888877655433 11111133788
Q ss_pred EEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCccee-e--
Q 016224 235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCI-Q-- 307 (393)
Q Consensus 235 l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~-~-- 307 (393)
+.++++ ++++.+....|..|.+......... .........-.+.+|+ ...+|++..||++.|||++..... .
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 889887 8888899999999998876532111 1222222333444554 458999999999999999874332 2
Q ss_pred --EeccCccceEEEEEc-C---CEEEEEeCCCcEEEEEcCCCcceEEEEeecCC------ccEEEEEeeeCCCCCcEEEE
Q 016224 308 --TLTEHTSVVMSLLCW-D---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE------HGVLALCGMPDSEGKPVLLC 375 (393)
Q Consensus 308 --~~~~~~~~v~~l~~~-~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~l~s 375 (393)
+-..|.+.+..+.|+ + ++|+..-.-+.+.+.|+++....+.+...... ..+..-+|..+.+ -+.+
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~---s~~v 319 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE---SNDV 319 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc---cccc
Confidence 223588999999998 2 35665556678999999998876665542221 2245555544433 3444
Q ss_pred EeCCCeEEEEeCCc
Q 016224 376 SCNDNSVRFYDLPS 389 (393)
Q Consensus 376 ~s~dg~I~iwd~~s 389 (393)
.+++ .+.-|++.+
T Consensus 320 ~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 320 KNEL-QGAEYNILS 332 (344)
T ss_pred ccch-hhheeeccc
Confidence 4443 345555443
No 265
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.1e-07 Score=91.32 Aligned_cols=183 Identities=15% Similarity=0.072 Sum_probs=134.9
Q ss_pred eecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224 108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (393)
Q Consensus 108 ~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (393)
....++|++++...+++|+-+|.|++.+.... . .+...|+.. ..+|.+++|||.||+|.|-.+.+.+...+
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 44578899999989999999999999997654 2 344446544 56899999999999999999887766544
Q ss_pred EecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-------EEEEEeCCCcEEEEEeccCC
Q 016224 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-------~l~~~~~dg~I~vwd~~~~~ 260 (393)
+. ...++.+++++|+ .+++|+.-| +.++.-+--.
T Consensus 109 ~d--------------------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 109 YD--------------------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred Ee--------------------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 42 3456778888887 789999888 7776433221
Q ss_pred ccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccce------EEEEEcCCEEEEEeCCCc
Q 016224 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV------MSLLCWDQFLLSCSLDKT 334 (393)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~l~~~~~~l~s~s~dg~ 334 (393)
. .....+..-.++|.++.|.++++|-++.+| |++||+.+++.+..++.....+ ..+.|.+...+.-+...+
T Consensus 150 n--k~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 150 N--KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred C--ccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 1 111234556789999999999999998777 8999999988888776443333 456676554444556668
Q ss_pred EEEEEcC
Q 016224 335 IKVWFAT 341 (393)
Q Consensus 335 i~iwd~~ 341 (393)
|+|..++
T Consensus 227 v~i~~I~ 233 (846)
T KOG2066|consen 227 VKICSIK 233 (846)
T ss_pred EEEEEEe
Confidence 9998887
No 266
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.89 E-value=4.2e-08 Score=95.10 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=138.7
Q ss_pred CCEEEEEcCCeEEEEECCCCceeeecCC-CCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEE
Q 016224 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGP-VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL 279 (393)
Q Consensus 201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~-~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l 279 (393)
..++..|....+..+|+.+.+....... ...|.-|+.+...+++|...|+|.+-|.++- +.++++..|++.+..+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF----ETIHTFDAHSGSISDF 223 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC----ceeeeeeccccceeee
Confidence 3445556777888999999887744443 3358888888889999999999999998876 7889999999999999
Q ss_pred EEcCCEEEEecC---------CCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcc--
Q 016224 280 VVGANKLYSGSM---------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN-- 345 (393)
Q Consensus 280 ~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~-- 345 (393)
...|+.|++++. |..|+|||++..+.+.-+.-+.++ .-+.|. ...+++++..|+..+-|..+...
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 999999999874 667999999998887777655544 223333 45789999999999999543332
Q ss_pred eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 346 LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 346 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
......+.....+.++.+++.++ .|+.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~---alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGD---ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCc---eEEEecccCcEeeec
Confidence 23344445555588888887766 899999999999996
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=5.6e-09 Score=90.55 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=114.6
Q ss_pred CCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeC--CEEEEEeCCCcEEEEEeccCCcc-ccCceeecCceeeEE
Q 016224 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNC-FEPAASLKGHSLAVV 277 (393)
Q Consensus 201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~-~~~~~~~~~~~~~v~ 277 (393)
+..+++|.+..|-+-|++++....+. ..+.|.++.|.. ++++.|+.+|.|..+|++..... ..+...+ -|...|+
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt 302 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT 302 (425)
T ss_pred eeeecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence 44466788889999999998877666 677899998876 39999999999999999986322 1222222 3777887
Q ss_pred EEE---EcCCEEEEecCCCcEEEeeCCCcce---eeEeccCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcceE
Q 016224 278 SLV---VGANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLE 347 (393)
Q Consensus 278 ~l~---~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~ 347 (393)
++. +++.+|++.+.+|+|++||++.-++ +.++.+|-..-.-+-+. ...+++++.|...+||.++.+..+.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 765 4678999999999999999998777 88888886554433332 5689999999999999998877665
Q ss_pred EEEe
Q 016224 348 VTYT 351 (393)
Q Consensus 348 ~~~~ 351 (393)
.+..
T Consensus 383 tipf 386 (425)
T KOG2695|consen 383 TIPF 386 (425)
T ss_pred ccCC
Confidence 5443
No 268
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.9e-07 Score=86.83 Aligned_cols=207 Identities=9% Similarity=0.025 Sum_probs=117.5
Q ss_pred eecceEEeeEecCc--EEEecC---CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCCcEEEEE--C
Q 016224 108 IKTDILCRNWVQGN--CMYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWD--C 179 (393)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g~~---dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd--~ 179 (393)
+...+.+..|++++ +++.+. ...|++||+.++ +.. .+......+...+|+||++.|+ +.+.+|...||. +
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g-~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG-RRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC-CEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 44577889999875 334332 346999999887 332 3333445667899999998886 567788767665 4
Q ss_pred CCCeEEEEEecCC---ceEEEEeCCCEEEEEc--CCe--EEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC-
Q 016224 180 ASGQCAGVINLGG---EVGCMISEGPWIFIGV--TNF--VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG- 249 (393)
Q Consensus 180 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~--~~~--i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg- 249 (393)
..+.. ..+.... ....+.++++.++... ++. |..++..++....+...........|+|+ .|+..+.++
T Consensus 272 ~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 272 DGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 44443 3332221 1234667888776542 344 44445555554433322333446778887 666555443
Q ss_pred --cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 250 --AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 250 --~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
.|.+||+.++.. ..+ .......-.+++.++++|+..+.++ .+.+.++ +++....+..+.+.+...+|+
T Consensus 351 ~~~I~v~d~~~g~~--~~l--t~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws 423 (427)
T PRK02889 351 AFKLYVQDLATGQV--TAL--TDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWG 423 (427)
T ss_pred cEEEEEEECCCCCe--EEc--cCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccC
Confidence 599999877632 111 1111112223444566666655433 3555566 355555565555555555554
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.87 E-value=8.5e-06 Score=74.19 Aligned_cols=222 Identities=12% Similarity=0.089 Sum_probs=134.5
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCc-------CCEEEEEecCCCCEEEEEe-C-CCcEEEEECCCCeEEEEEecCCceE
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGHQ-------KVVSGITLPSGSDKLYSGS-K-DETVRVWDCASGQCAGVINLGGEVG 195 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h~-------~~I~~i~~s~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~~~~~~~~~ 195 (393)
|-.+..|.+||+.+. +.+.++..-. ..-..++++|||++|+... . +..|.+.|+.+++.+.++..+....
T Consensus 73 G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~ 151 (352)
T TIGR02658 73 GKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH 151 (352)
T ss_pred CCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE
Confidence 447899999999998 8887776422 2334688999999999776 3 6899999999999999998765433
Q ss_pred EEE-eCCCEEEEEcCCeEEEEECCC-Ccee----ee-cCCCCcEEEE-EEeC-C--EEEEEeCCCcEEEEEeccCCccc-
Q 016224 196 CMI-SEGPWIFIGVTNFVKAWNTQT-NTDL----SL-SGPVGQVYAM-AVGN-D--LLFAGTQDGAILAWKFNVTTNCF- 263 (393)
Q Consensus 196 ~~~-~~~~~l~~~~~~~i~v~d~~~-~~~~----~~-~~~~~~v~~l-~~~~-~--~l~~~~~dg~I~vwd~~~~~~~~- 263 (393)
.+. ++..+.+...|+......+.. ++.. .+ ......+..- .|.+ + ++++... |.|.+.|+.......
T Consensus 152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence 322 333344444444333322211 1111 01 0100000000 2233 3 5555555 999999975543211
Q ss_pred cCceeecC-------ceee--EEEEEEcCCEEEEec----------CCCcEEEeeCCCcceeeEeccCccceEEEEEc--
Q 016224 264 EPAASLKG-------HSLA--VVSLVVGANKLYSGS----------MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-- 322 (393)
Q Consensus 264 ~~~~~~~~-------~~~~--v~~l~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-- 322 (393)
.....+.. .... ..++..++++++... ..+.|.++|..+++.+..+.. ...+..+.++
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~D 309 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQD 309 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCC
Confidence 11111110 1111 244444567666532 225899999999999998874 3366777777
Q ss_pred CC-EEEEEe-CCCcEEEEEcCCCcceEEE
Q 016224 323 DQ-FLLSCS-LDKTIKVWFATDSGNLEVT 349 (393)
Q Consensus 323 ~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 349 (393)
++ +|++.. .++.|.++|..+.+.+..+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 56 666555 6788999999888777665
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=1.3e-08 Score=61.43 Aligned_cols=38 Identities=37% Similarity=0.663 Sum_probs=36.7
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd 178 (393)
+++.++++|.+.|++|+|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67889999999999999999999999999999999997
No 271
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.7e-06 Score=82.87 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=78.8
Q ss_pred EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC-EEEEEeC----------CCcEEEEEcCCCcceEEE-Eee
Q 016224 285 KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSL----------DKTIKVWFATDSGNLEVT-YTH 352 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~----------dg~i~iwd~~~~~~~~~~-~~~ 352 (393)
+++.|+..|+|.++|+.++.....+..|...|.++.|-|. .|++.+. -+.+.|-|++++...... ...
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 4788999999999999999999999999999999999865 3444433 244678888877543322 123
Q ss_pred cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 353 ~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
..+.++..+..+..+. ||+..-.|.-+.+||+++..
T Consensus 519 ~despI~~irvS~~~~---yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGR---YLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred CCcCcceeeeecccCc---eEEEEecccchHHHhhccch
Confidence 4455677776655444 99999999999999997654
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=3.2e-07 Score=87.71 Aligned_cols=275 Identities=12% Similarity=0.147 Sum_probs=171.6
Q ss_pred EeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC------------CCEEEEEeCCCcEEEEECCC
Q 016224 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG------------SDKLYSGSKDETVRVWDCAS 181 (393)
Q Consensus 114 c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~------------~~~l~s~s~dg~v~iwd~~~ 181 (393)
.+.|++.+++.-+....|.+-|..+- +.+..+..|+..|+.+.|.|. .-+||++...|.|.+||...
T Consensus 20 A~Dw~~~GLiAygshslV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSHSLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred ccccCccceEEEecCceEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 46788888887666678888898887 899999999999999999752 13678888899999999998
Q ss_pred CeEEEEEecCCce---EEEEe---CC-CEE-EEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224 182 GQCAGVINLGGEV---GCMIS---EG-PWI-FIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDG 249 (393)
Q Consensus 182 ~~~~~~~~~~~~~---~~~~~---~~-~~l-~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg 249 (393)
+..+..++.+... .++.. +. .+| +.....++.+|+..+|+.+ ..........++.++|- .+..-+..|
T Consensus 99 ~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 99 ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 8887777765432 23332 33 233 3457789999999999987 55555556667888774 666667778
Q ss_pred cEEEEEeccCCccccCceee---cCcee-------------------e------EEEEEEcCC--EEEEecCCCcEEEee
Q 016224 250 AILAWKFNVTTNCFEPAASL---KGHSL-------------------A------VVSLVVGAN--KLYSGSMDNSIRVWN 299 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~---~~~~~-------------------~------v~~l~~~~~--~l~sg~~dg~i~iwd 299 (393)
.+.+-+.-...+.-.+.+.+ ..|.. . ...++|.+. .++-......+.++|
T Consensus 179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d 258 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD 258 (1062)
T ss_pred eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence 77777654332211111111 11111 0 011233332 122333466799999
Q ss_pred CCCcceeeEeccCcc--ceEEEEEc--CCEEEEEeCCCcEEEEEcCCC----------------cceEEEEeecCCccEE
Q 016224 300 LETLQCIQTLTEHTS--VVMSLLCW--DQFLLSCSLDKTIKVWFATDS----------------GNLEVTYTHNEEHGVL 359 (393)
Q Consensus 300 ~~~~~~~~~~~~~~~--~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~ 359 (393)
++-..++.......+ ++..+... .+.|++...||.+.||--+.. .+...+...+.. ...
T Consensus 259 le~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~ 337 (1062)
T KOG1912|consen 259 LEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPV 337 (1062)
T ss_pred chhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc-ccc
Confidence 998888777665444 34444444 357999999999999966542 112222222211 122
Q ss_pred EEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.....|..+. .++.--.+|.+.+|.+.++++
T Consensus 338 ~~~~cPs~~s--a~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 338 IGASCPSTPS--ALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred eeecCCCChh--hhhhhhhcchhHHHhhhcCCc
Confidence 2222333222 344445678889999987654
No 273
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.82 E-value=5.1e-06 Score=80.47 Aligned_cols=264 Identities=14% Similarity=0.154 Sum_probs=158.1
Q ss_pred ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcC------CEE--EEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK------VVS--GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (393)
Q Consensus 118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~------~I~--~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (393)
..+.+++++.++.|+-.|..++ +.+-.++.... .+. .++.. ++..++.++.++.|.-+|.++|+.+..+.
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 4566778888999999999998 55555443222 110 11111 22678888999999999999999998887
Q ss_pred cCCce------E--EEEeCCCEEEEE----------cCCeEEEEECCCCcee-eecCC-C-------------------C
Q 016224 190 LGGEV------G--CMISEGPWIFIG----------VTNFVKAWNTQTNTDL-SLSGP-V-------------------G 230 (393)
Q Consensus 190 ~~~~~------~--~~~~~~~~l~~~----------~~~~i~v~d~~~~~~~-~~~~~-~-------------------~ 230 (393)
..... . ....+ .+++++ .++.+..+|..+++.+ ..... . .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 65441 1 11223 444443 2568899999999876 32211 1 0
Q ss_pred cE-EEEEEe--CCEEEEEeCCC------------------cEEEEEeccCCccccCceee------cCceee-EEEEE-E
Q 016224 231 QV-YAMAVG--NDLLFAGTQDG------------------AILAWKFNVTTNCFEPAASL------KGHSLA-VVSLV-V 281 (393)
Q Consensus 231 ~v-~~l~~~--~~~l~~~~~dg------------------~I~vwd~~~~~~~~~~~~~~------~~~~~~-v~~l~-~ 281 (393)
.+ ....++ .+.+++++.++ .|..+|..+++..++..... .....+ +..+. .
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 01 123343 34788887665 78899998886544321110 111111 11121 3
Q ss_pred cCC---EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEE------------------eCCCcEEEEEc
Q 016224 282 GAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSC------------------SLDKTIKVWFA 340 (393)
Q Consensus 282 ~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~------------------s~dg~i~iwd~ 340 (393)
++. .++.++.+|.+...|.++|+.+....... ..+..++..++.+ ..+|.|.-.|+
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 443 58888999999999999999887764221 1122223333332 24678888888
Q ss_pred CCCcceEEEEeecCC------ccE--EEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 341 TDSGNLEVTYTHNEE------HGV--LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~------~~v--~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
.+++.+-........ ... ..+. . .+.+|+.++.||.|+.+|..+|++
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~----~-~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLA----T-AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceE----e-cCCeEEEECCCCeEEEEECCCCce
Confidence 888765554432100 000 0111 1 122788889999999999999976
No 274
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.81 E-value=6.6e-07 Score=85.22 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=120.0
Q ss_pred cceEEeeEecCc--EEEec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE-EeCCC--cEEEEECCC
Q 016224 110 TDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDE--TVRVWDCAS 181 (393)
Q Consensus 110 ~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s-~s~dg--~v~iwd~~~ 181 (393)
..+....|++++ +++.. ....|++||+.++ +.. .+..+...+.+++|+||++.|+. .+.++ .|.+||+.+
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 356777898874 33333 2358999999887 332 33345566778999999987764 44444 588999988
Q ss_pred CeEEEEEecCCc--eEEEEeCCCEEEEE-c-CC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC---c
Q 016224 182 GQCAGVINLGGE--VGCMISEGPWIFIG-V-TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG---A 250 (393)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~l~~~-~-~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg---~ 250 (393)
++.......... ...+.++++.|+.. . .+ .|.++++.+++...+..+...+....|+++ +++....++ .
T Consensus 268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 765444333221 22445678876654 2 22 688889888776666555666778889887 666666655 7
Q ss_pred EEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceE
Q 016224 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVM 317 (393)
Q Consensus 251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~ 317 (393)
|.+||+..+.. +.+.. ... ..-..++.++++|+..+.++ .+.+.+.. ++....+..+.+.+.
T Consensus 348 i~~~d~~~~~~--~~l~~-~~~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~ 412 (417)
T TIGR02800 348 IAVMDLDGGGE--RVLTD-TGL-DESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVR 412 (417)
T ss_pred EEEEeCCCCCe--EEccC-CCC-CCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcC
Confidence 88888876421 11111 111 11124455677776665543 35555543 444455544333333
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.80 E-value=5.8e-07 Score=83.48 Aligned_cols=181 Identities=19% Similarity=0.172 Sum_probs=133.3
Q ss_pred EEEE-EcCCeEEEEECCCCceeeecC----CCCcEEEEEEe------C--------------C--EEEEEeCCCcEEEEE
Q 016224 203 WIFI-GVTNFVKAWNTQTNTDLSLSG----PVGQVYAMAVG------N--------------D--LLFAGTQDGAILAWK 255 (393)
Q Consensus 203 ~l~~-~~~~~i~v~d~~~~~~~~~~~----~~~~v~~l~~~------~--------------~--~l~~~~~dg~I~vwd 255 (393)
+++. ..||.+++|+...++...-.. ..+..++..|. | + .++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 3443 488999999999988763222 22333343331 1 2 788899999999999
Q ss_pred eccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEeC
Q 016224 256 FNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSL 331 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~ 331 (393)
+..+... ....-..|.+.|.++.+..+ .|++++.|+.+..|+....+.+..+......+.+++++++ .+++++
T Consensus 87 ~~~g~it--~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 87 VAGGEIT--AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred ecCCeEE--EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9887431 12223468899999987754 6999999999999999999999999999999999988855 777775
Q ss_pred CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC--CC-CCcEEEEEeCCCeEEEEeCCc
Q 016224 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD--SE-GKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~~~l~s~s~dg~I~iwd~~s 389 (393)
++|++||+++.+.+..+.+|... +..+.|... +. +..+|.+...+.-|.+|-+..
T Consensus 164 -~~ik~~~~~~kevv~~ftgh~s~--v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDIETKEVVITFTGHGSP--VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEccCceEEEEecCCCcc--eEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 58999999999988888888776 566665544 22 333555555666788887653
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=3e-08 Score=93.98 Aligned_cols=210 Identities=20% Similarity=0.311 Sum_probs=141.5
Q ss_pred CeEEEEECCC--CcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCCeE-EEEEec---C-CceEEEEeC
Q 016224 129 KFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQC-AGVINL---G-GEVGCMISE 200 (393)
Q Consensus 129 g~i~vwd~~~--~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~~~-~~~~~~---~-~~~~~~~~~ 200 (393)
..-.+|++.. ....-..+.+|+.+|+.+-|++.. ..|++++.|-.|..||+++... +..+.. . ..+.--..+
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 3445788752 225556788999999999998854 6889999999999999987642 222221 1 122222346
Q ss_pred CCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceee
Q 016224 201 GPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA 275 (393)
Q Consensus 201 ~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 275 (393)
+..++.+..+.|.+||.+.+... .+.+|...|..+.|..- .+.+.+.|++|+.||........+...+ ...+
T Consensus 171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---t~~p 247 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT---TNFP 247 (1081)
T ss_pred cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc---ccCc
Confidence 77777788889999999987644 78889999999998765 8999999999999998876542221111 1111
Q ss_pred EE-----------EEEE--cCCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc------------CCEEEEE
Q 016224 276 VV-----------SLVV--GANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW------------DQFLLSC 329 (393)
Q Consensus 276 v~-----------~l~~--~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~------------~~~l~s~ 329 (393)
|. ++-+ .++.+..---+.....|+..+ .+++++|.+|...|..+.|. +-.|++=
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW 327 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence 11 1111 112222222233334444433 56799999999999777664 1269999
Q ss_pred eCCCcEEEEEcC
Q 016224 330 SLDKTIKVWFAT 341 (393)
Q Consensus 330 s~dg~i~iwd~~ 341 (393)
+.|..+++|-+.
T Consensus 328 SkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 328 SKDQTLRLWPID 339 (1081)
T ss_pred ecCCceEeeecc
Confidence 999999999765
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.8e-06 Score=78.61 Aligned_cols=220 Identities=12% Similarity=0.150 Sum_probs=144.7
Q ss_pred EEeeEecCcEEEe-cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC--CEEEE-----EeCCCcEEEEECCCCeE
Q 016224 113 LCRNWVQGNCMYG-EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS--DKLYS-----GSKDETVRVWDCASGQC 184 (393)
Q Consensus 113 ~c~~~~~~~~~~g-~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~--~~l~s-----~s~dg~v~iwd~~~~~~ 184 (393)
.|.+|+.+..+.+ -..+.+++|+..+-....+.| |...|+.+.+||.. ..||+ .+.-..|+||.+.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 6888987765543 355689999987642333333 68899999999863 34443 34556899998863322
Q ss_pred E-----EEEecCCceEEEEe-CCC--EEEEE--c---------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC----E
Q 016224 185 A-----GVINLGGEVGCMIS-EGP--WIFIG--V---------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----L 241 (393)
Q Consensus 185 ~-----~~~~~~~~~~~~~~-~~~--~l~~~--~---------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~ 241 (393)
- ++|-....+..... -+. ++++. . +.++++++++......-....++|.++.|+++ -
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~ 286 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFA 286 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEE
Confidence 1 12222223322222 122 22222 1 23788888885555555556899999999998 3
Q ss_pred EEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecC---CCcEEEeeCCCcceeeEeccCccce
Q 016224 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSM---DNSIRVWNLETLQCIQTLTEHTSVV 316 (393)
Q Consensus 242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v 316 (393)
++.|-.=-.+.|||++.. ++..+.. ++-.++-| .|++++.++- -|.+-|||+.+.+++..+..-...+
T Consensus 287 VvyGfMPAkvtifnlr~~-----~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRGK-----PVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEEecccceEEEEcCCCC-----EeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 444556678999998863 3444432 33344445 4777766654 5899999999999999998777766
Q ss_pred EEEEEcCCEEEEEeC------CCcEEEEEcC
Q 016224 317 MSLLCWDQFLLSCSL------DKTIKVWFAT 341 (393)
Q Consensus 317 ~~l~~~~~~l~s~s~------dg~i~iwd~~ 341 (393)
..-+.+|++|+|+.. |+.++||+..
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 666666899998875 7889999984
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.73 E-value=2.8e-05 Score=81.65 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=136.4
Q ss_pred EEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC----------------Cce-EEEEeCCCEEEEE--cCCeEE
Q 016224 154 SGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLG----------------GEV-GCMISEGPWIFIG--VTNFVK 213 (393)
Q Consensus 154 ~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----------------~~~-~~~~~~~~~l~~~--~~~~i~ 213 (393)
..+++++. ++++++-+..+.|.+||.. ++.+..+... .+. ..+.+++..|+++ ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778764 5566666778899999986 4444433321 111 2233456655554 346899
Q ss_pred EEECCCCceeeecCC-----------------CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc-cc---Cceee
Q 016224 214 AWNTQTNTDLSLSGP-----------------VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC-FE---PAASL 269 (393)
Q Consensus 214 v~d~~~~~~~~~~~~-----------------~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~-~~---~~~~~ 269 (393)
++|..++....+.+. ......++++++ ++++...++.|++||...+... +. .....
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 999888765443211 123457888873 6677778899999998664210 00 00000
Q ss_pred cCc------eeeEEEEEE--cCC-EEEEecCCCcEEEeeCCCcceeeEe-------------ccCc--------cceEEE
Q 016224 270 KGH------SLAVVSLVV--GAN-KLYSGSMDNSIRVWNLETLQCIQTL-------------TEHT--------SVVMSL 319 (393)
Q Consensus 270 ~~~------~~~v~~l~~--~~~-~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~~~--------~~v~~l 319 (393)
.++ -.....+++ +++ ++++-+.++.|++||+.++...... ..+. ..-..+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 010 011234555 455 4556667899999999876532111 0000 012456
Q ss_pred EEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecC------------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224 320 LCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE------------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (393)
Q Consensus 320 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw 385 (393)
+++ ++.+++-+.+++|++||..++... .+..... -.....+++.+++. ++++-+.++.|++|
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~---lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR---LFVADTNNSLIRYL 885 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC---EEEEECCCCEEEEE
Confidence 665 667788888999999998765432 2222110 11345667766543 88888899999999
Q ss_pred eCCcee
Q 016224 386 DLPSVI 391 (393)
Q Consensus 386 d~~s~~ 391 (393)
|+.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 998865
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=7.7e-08 Score=91.32 Aligned_cols=215 Identities=17% Similarity=0.174 Sum_probs=145.7
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCce----EEEE--e-CCCEEEEEcCCeEEEEECCCCc
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEV----GCMI--S-EGPWIFIGVTNFVKAWNTQTNT 221 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~----~~~~--~-~~~~l~~~~~~~i~v~d~~~~~ 221 (393)
..++.++..+|.|+-++.++.-|. .+-|+.. ....+.+.+-.+. ..+. + ...+++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 356777889999999999888764 4556554 3333333322221 1111 2 2334444455567788876433
Q ss_pred ----eeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224 222 ----DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD 292 (393)
Q Consensus 222 ----~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d 292 (393)
.+.+.+|...|+.+.|++. .+++++.|-.+..||+++.. .+......-......++|+ ...+.+.+..
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhhccC
Confidence 2367899999999999765 99999999999999999875 4444444444455566775 2234455567
Q ss_pred CcEEEeeCCC-cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224 293 NSIRVWNLET-LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368 (393)
Q Consensus 293 g~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 368 (393)
..|++||++. +.++.++++|...|..+.|. ...+.+++.|++|+.||........... .....++..-.+.|.++
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-ccccCcceeccccccCc
Confidence 7899999986 46788899999999999887 4578999999999999987554322222 22234567777777765
Q ss_pred C
Q 016224 369 G 369 (393)
Q Consensus 369 ~ 369 (393)
+
T Consensus 259 g 259 (1081)
T KOG0309|consen 259 G 259 (1081)
T ss_pred e
Confidence 4
No 280
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=4.9e-06 Score=79.57 Aligned_cols=208 Identities=14% Similarity=0.051 Sum_probs=117.6
Q ss_pred eecceEEeeEecCc--EEEecC---CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCC--cEEEEEC
Q 016224 108 IKTDILCRNWVQGN--CMYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDE--TVRVWDC 179 (393)
Q Consensus 108 ~~~~i~c~~~~~~~--~~~g~~---dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg--~v~iwd~ 179 (393)
+...+....|++++ +++.+. ...|.+||+.++ +.. .+....+.+...+|+|||+.|+ +.+.+| .|.+||+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-RRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-CEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 44567888999774 334332 247999999877 332 2333344556789999999887 445555 5888899
Q ss_pred CCCeEEEEEecCCc--eEEEEeCCCEEEEEc--C--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC-CC-
Q 016224 180 ASGQCAGVINLGGE--VGCMISEGPWIFIGV--T--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-DG- 249 (393)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~--~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~-dg- 249 (393)
.+++.......... ...+.++++.++... + ..|.++++.+++...+...........|+|+ .++.... ++
T Consensus 275 ~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~ 354 (430)
T PRK00178 275 ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGN 354 (430)
T ss_pred CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCc
Confidence 88775543332211 234556787666542 2 2688888888776544322233345678877 5544443 33
Q ss_pred -cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 250 -AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 250 -~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
.|.++|+.++.. ..+.. .....-..++.+++.++..+.+ ..|.++++. +.....+..+.+.+...+|+
T Consensus 355 ~~l~~~dl~tg~~--~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 355 FHVAAQDLQRGSV--RILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWS 426 (430)
T ss_pred eEEEEEECCCCCE--EEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccC
Confidence 477888876532 11111 1111112455567766555433 346677774 34344454444444444443
No 281
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=6.3e-06 Score=78.90 Aligned_cols=207 Identities=10% Similarity=0.031 Sum_probs=116.2
Q ss_pred ecceEEeeEecCc--EEEec-CC--CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE-EeCCCc--EEEEECC
Q 016224 109 KTDILCRNWVQGN--CMYGE-KC--KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDET--VRVWDCA 180 (393)
Q Consensus 109 ~~~i~c~~~~~~~--~~~g~-~d--g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s-~s~dg~--v~iwd~~ 180 (393)
...+....|++++ +++.+ .+ ..|++||+.++ +.. .+..........+|+||++.|+. .+.+|. |.++|+.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-CeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 4467788999885 33332 22 36899999876 322 22222233456899999998765 566665 7778888
Q ss_pred CCeEEEEEecCC--ceEEEEeCCCEEEEEc--CC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEE-EeCCCc-
Q 016224 181 SGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA-GTQDGA- 250 (393)
Q Consensus 181 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~--~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~-~~~dg~- 250 (393)
+++......... ....+.++++.++... ++ .|.++|+.+++...+...........|+|+ .|+. ...++.
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCce
Confidence 876544333221 2234567888776542 22 677888888776544322233345678887 4444 444554
Q ss_pred -EEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEec-CCC--cEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 251 -ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGS-MDN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 251 -I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
|.++|+.++.. ..+. ......-.+++.++++|+..+ .++ .+.+++. +++....+..+.+.+...+|+
T Consensus 375 ~I~~~dl~~g~~--~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Ws 445 (448)
T PRK04792 375 NIARQDLETGAM--QVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWS 445 (448)
T ss_pred EEEEEECCCCCe--EEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccC
Confidence 44556655431 1111 111111124555677655444 344 3677776 466666666555555555554
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=0.00021 Score=63.22 Aligned_cols=257 Identities=13% Similarity=0.145 Sum_probs=153.3
Q ss_pred CCeEEEEECCCC--cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCC--CeEEE--EEecC--C-ceE
Q 016224 128 CKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCAS--GQCAG--VINLG--G-EVG 195 (393)
Q Consensus 128 dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~--~~~~~--~~~~~--~-~~~ 195 (393)
+.-|++|++.+. ......+-.+.+..+-|+|+|++++|+++-.+ |.|..|.++. |+... ..... . ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743 12222334577889999999999999998654 7888887765 44322 22222 2 234
Q ss_pred EEEeCCCEEEEE--cCCeEEEEECCC-Ccee---eecCCCCc----------EEEEEEeCC--EEEEEe-CCCcEEEEEe
Q 016224 196 CMISEGPWIFIG--VTNFVKAWNTQT-NTDL---SLSGPVGQ----------VYAMAVGND--LLFAGT-QDGAILAWKF 256 (393)
Q Consensus 196 ~~~~~~~~l~~~--~~~~i~v~d~~~-~~~~---~~~~~~~~----------v~~l~~~~~--~l~~~~-~dg~I~vwd~ 256 (393)
++..++++++++ ..+.|.++-++. +... .+..|.+. +....+.|+ +|++.. .-..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 455688899987 567999999976 3322 33444444 777888888 444443 3456999999
Q ss_pred ccCCccccCceeecCceeeEEEEEEc--CCEEEE-ecCCCcEEEeeCCCc-ceeeEecc---------CccceEEEEEc-
Q 016224 257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYS-GSMDNSIRVWNLETL-QCIQTLTE---------HTSVVMSLLCW- 322 (393)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s-g~~dg~i~iwd~~~~-~~~~~~~~---------~~~~v~~l~~~- 322 (393)
..+.........+ .....-..|.|. +++.+. .--+++|.+|..... ..+..++. ......+|..+
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 8664332222222 223334556665 455444 446899999988762 22222221 12234455555
Q ss_pred -CCEEEEEeC-CCcEEEEEcCCCcc-eEEEEeecCC-ccEEEEEeeeCCCCCcEEEEEeC-CCeEEEEeCC
Q 016224 323 -DQFLLSCSL-DKTIKVWFATDSGN-LEVTYTHNEE-HGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLP 388 (393)
Q Consensus 323 -~~~l~s~s~-dg~i~iwd~~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~s~s~-dg~I~iwd~~ 388 (393)
|++|.++.. ...|.+|.+..... +........+ ..-..+.+.+.+. +|+++.. +..|.+|.+.
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EEEEEccCCCcEEEEEEc
Confidence 778877654 44788888875533 3333322222 2255666655544 7777665 4568888764
No 283
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.64 E-value=0.00022 Score=63.69 Aligned_cols=256 Identities=13% Similarity=0.155 Sum_probs=152.3
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC----------CCcEEEEECCCCeEEEEEecCCc--e--
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLGGE--V-- 194 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~--~-- 194 (393)
+.++|+|.+++ +.+-.+..-- .-.+..+|+++.+++++. .-.|.+||..+-+....+..+.. .
T Consensus 17 ~rv~viD~d~~-k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSG-KLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTT-EEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCC-cEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 47999999998 7777775322 223567899999987642 34899999999999988877653 1
Q ss_pred ------EEEEeCCCEEEEE---cCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcccc-
Q 016224 195 ------GCMISEGPWIFIG---VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE- 264 (393)
Q Consensus 195 ------~~~~~~~~~l~~~---~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~- 264 (393)
..+..+++++++- -...|.|.|+..++.+......+...-.-..++-|.+-|.||++.-..+....+...
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 2344578888775 334888899988888755555555444455566888999999999999885432111
Q ss_pred CceeecCceeeEE-EEE--EcCCEEEEecCCCcEEEeeCCCcce--eeEeccC----------ccceEEEEEc--CCEEE
Q 016224 265 PAASLKGHSLAVV-SLV--VGANKLYSGSMDNSIRVWNLETLQC--IQTLTEH----------TSVVMSLLCW--DQFLL 327 (393)
Q Consensus 265 ~~~~~~~~~~~v~-~l~--~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~----------~~~v~~l~~~--~~~l~ 327 (393)
....+.....++. .-. -.++.++--+.+|.|+--|+..... ...+..- .+.-.-++++ .+.|+
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 0011111111111 111 1344566677888888888765432 1222110 0011223343 23333
Q ss_pred EEe---C-----CC--cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCCceee
Q 016224 328 SCS---L-----DK--TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSVII 392 (393)
Q Consensus 328 s~s---~-----dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~s~~l 392 (393)
+-- . |+ .|-++|+.+.+.+..+.... .+.++..+.+ ++++|++.+ .++.|.+||..+|++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd--~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQD--DKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESS--SS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccC--CCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 221 1 22 26677888887777665422 2546666654 455777654 589999999999975
No 284
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=3.3e-05 Score=65.21 Aligned_cols=267 Identities=16% Similarity=0.194 Sum_probs=137.9
Q ss_pred ceEEeeEe-cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224 111 DILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188 (393)
Q Consensus 111 ~i~c~~~~-~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (393)
.|-|.+.. .+-++.|...|.+++.+.++| .....+..-. .|. .-...+++.++..|+.|++....|..+..++...
T Consensus 54 RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 54 RIECSAIVVGDFVVLGCYSGGLYFLCVKTG-SQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eeeeeeEEECCEEEEEEccCcEEEEEecch-hheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 44444433 445778999999999999999 5555554322 222 2234678999999999999999999999999888
Q ss_pred ecCCceEE---EEe-CCCEEEEEcCCeEEEEECCCCceeeec--CCCCcEEE--EEEeCCEEEEEeCCCcE--------E
Q 016224 189 NLGGEVGC---MIS-EGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQVYA--MAVGNDLLFAGTQDGAI--------L 252 (393)
Q Consensus 189 ~~~~~~~~---~~~-~~~~l~~~~~~~i~v~d~~~~~~~~~~--~~~~~v~~--l~~~~~~l~~~~~dg~I--------~ 252 (393)
+.++.+.. +.+ ++.+.++...|.+.--+..+.....+- ....++.+ +...+ .+..++.||.+ .
T Consensus 132 kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~-sv~i~~VdG~l~~f~~sG~q 210 (354)
T KOG4649|consen 132 KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGS-SVIITTVDGVLTSFDESGRQ 210 (354)
T ss_pred ccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccc-eEEEEEeccEEEEEcCCCcE
Confidence 77655422 223 455555556665555454444222111 11122221 11111 22333344444 3
Q ss_pred EEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE-----c-CCE
Q 016224 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-----W-DQF 325 (393)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-----~-~~~ 325 (393)
+|..+++...+. ..-..|. ....+.+. .+-+.+......-.+|..++|...+.+-..+ ..+.+ + +++
T Consensus 211 vwr~~t~GpIf~--~Pc~s~P-s~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~l 284 (354)
T KOG4649|consen 211 VWRPATKGPIFM--EPCESRP-SCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKL 284 (354)
T ss_pred EEeecCCCceec--ccccCCC-cceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhh
Confidence 555555432211 0111111 11222222 2333333333344567766664433322111 01111 1 457
Q ss_pred EEEEeCCCcEEEEEcCC--------CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 326 LLSCSLDKTIKVWFATD--------SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 326 l~s~s~dg~i~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
|..++.||++.|.-.+. +.+++.+....-...+. -+|.--++ .|+.|+.|..|+-||+.+.
T Consensus 285 l~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIF---sSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 285 LRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIF---SSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccc---cCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 78889999998874321 12222222111111111 11111122 5888999999999999875
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=82.63 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=100.5
Q ss_pred EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc-----ceeeEeccCccc
Q 016224 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL-----QCIQTLTEHTSV 315 (393)
Q Consensus 243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~ 315 (393)
++.+.+..|.+-|+.++.. ..+. ....|.++.|. ++++..|...|.|..+|++.+ .+.+.+. |...
T Consensus 228 fs~G~sqqv~L~nvetg~~-----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc-----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcc
Confidence 5566677788888888642 2232 45566666664 679999999999999999864 3444443 7888
Q ss_pred eEEEE---EcCCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 316 VMSLL---CWDQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 316 v~~l~---~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
|+++. +++++|++.+.+|+|++||++..+. +....+|.....-. -++-+. .+..+++++.|-..|||.+.+
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l--~~~v~~-eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL--PAHVKE-EEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc--cccccc-ccceEEEccCeeEEEEEeccc
Confidence 87764 5688999999999999999987766 55666654432222 222222 333788899999999999998
Q ss_pred eee
Q 016224 390 VII 392 (393)
Q Consensus 390 ~~l 392 (393)
+.|
T Consensus 378 ghL 380 (425)
T KOG2695|consen 378 GHL 380 (425)
T ss_pred Cce
Confidence 865
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.59 E-value=9.8e-05 Score=77.67 Aligned_cols=219 Identities=11% Similarity=0.112 Sum_probs=131.4
Q ss_pred EecCCCeEEEEECCCCcEEEEEecC-C-------------cCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEEEEE
Q 016224 124 YGEKCKFLHSWTVGDGFKLLTQLEG-H-------------QKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVI 188 (393)
Q Consensus 124 ~g~~dg~i~vwd~~~~~~~~~~l~~-h-------------~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~ 188 (393)
+-+..+.|++||.... .+..+.+ . -..-..|+++++++.|+.+.. ...|+++|..++.. .++
T Consensus 585 aDs~n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tl 661 (1057)
T PLN02919 585 SDSNHNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTL 661 (1057)
T ss_pred EECCCCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEE
Confidence 3456678999997643 3333322 1 123578999998887776655 46799999877653 222
Q ss_pred ec-------------------CCce-EEEEe-CCCEEEEE-cCCeEEEEECCCCceeeecCC---------------CCc
Q 016224 189 NL-------------------GGEV-GCMIS-EGPWIFIG-VTNFVKAWNTQTNTDLSLSGP---------------VGQ 231 (393)
Q Consensus 189 ~~-------------------~~~~-~~~~~-~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~---------------~~~ 231 (393)
.. ..+. ..+.+ ++.++++. .++.|++||..++....+.+. ...
T Consensus 662 ag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~ 741 (1057)
T PLN02919 662 AGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQ 741 (1057)
T ss_pred eccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccC
Confidence 11 1111 23334 34444443 567999999987765432211 123
Q ss_pred EEEEEEeCC---EEEEEeCCCcEEEEEeccCCccc---------cCceeecCc--------eeeEEEEEE--cCCEEEEe
Q 016224 232 VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCF---------EPAASLKGH--------SLAVVSLVV--GANKLYSG 289 (393)
Q Consensus 232 v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~---------~~~~~~~~~--------~~~v~~l~~--~~~~l~sg 289 (393)
...|+++++ ++++-+.++.|++||+.++.... .....+... -.....+++ +++.+++-
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD 821 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD 821 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence 556888886 55666778999999987643110 000000000 001134444 46678888
Q ss_pred cCCCcEEEeeCCCcceeeEecc-------------CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc
Q 016224 290 SMDNSIRVWNLETLQCIQTLTE-------------HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN 345 (393)
Q Consensus 290 ~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~ 345 (393)
+.++.|++||..++........ .-.....++++ ++.+++-+.++.|++||+.+...
T Consensus 822 s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 822 SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 8899999999987765432210 11134566665 67888888899999999987653
No 287
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.59 E-value=8.1e-05 Score=72.17 Aligned_cols=224 Identities=12% Similarity=0.062 Sum_probs=138.7
Q ss_pred CcEEEecCCCeEEEEECCCCcEEEEEecCCcCC--EEEEEecC--CCCEEEEEe---------CCCcEEEEECCCCeEEE
Q 016224 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--VSGITLPS--GSDKLYSGS---------KDETVRVWDCASGQCAG 186 (393)
Q Consensus 120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~--I~~i~~s~--~~~~l~s~s---------~dg~v~iwd~~~~~~~~ 186 (393)
+.+++++.++.|+-+|.+++ +.+-+++..... -..+.-+| .+.+++.++ .+|.|..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG-~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG-KQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCC-CEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 67788999999999999999 666555433221 00111111 124555554 36889999999999988
Q ss_pred EEecCCce------------------------EEEEeCCCEEEEE-cCC------------------eEEEEECCCCcee
Q 016224 187 VINLGGEV------------------------GCMISEGPWIFIG-VTN------------------FVKAWNTQTNTDL 223 (393)
Q Consensus 187 ~~~~~~~~------------------------~~~~~~~~~l~~~-~~~------------------~i~v~d~~~~~~~ 223 (393)
.++..... ..+...+..++++ .++ .|.-+|..+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 87653110 0111234555555 332 6999999999887
Q ss_pred -eec--CCCC---------cEEEEE-EeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEE
Q 016224 224 -SLS--GPVG---------QVYAMA-VGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY 287 (393)
Q Consensus 224 -~~~--~~~~---------~v~~l~-~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 287 (393)
... .+.. .+..+. .+.. .+++++.+|.+..+|.++++..++.... ...++.+++.++
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~~~vy 342 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDPGLVY 342 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCCceEE
Confidence 322 1110 111111 2222 6788889999999999998654332111 011222334444
Q ss_pred Ee------------------cCCCcEEEeeCCCcceeeEeccCc--------cce--EEEEEcCCEEEEEeCCCcEEEEE
Q 016224 288 SG------------------SMDNSIRVWNLETLQCIQTLTEHT--------SVV--MSLLCWDQFLLSCSLDKTIKVWF 339 (393)
Q Consensus 288 sg------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~l~~~~~~l~s~s~dg~i~iwd 339 (393)
.+ ..+|.|.-.|+.+++.+.+..... .+. ..+...+..|+.++.||.|+.+|
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 32 246889999999999887765431 111 23456688999999999999999
Q ss_pred cCCCcceEEEEe
Q 016224 340 ATDSGNLEVTYT 351 (393)
Q Consensus 340 ~~~~~~~~~~~~ 351 (393)
..+++.+.....
T Consensus 423 ~~tG~~lW~~~~ 434 (488)
T cd00216 423 ATTGKELWKFRT 434 (488)
T ss_pred CCCCceeeEEEC
Confidence 999987766543
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.4e-06 Score=78.51 Aligned_cols=240 Identities=15% Similarity=0.109 Sum_probs=162.7
Q ss_pred eecceEEeeEe-cCcEEEecCCCeEEEEECC--CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCe
Q 016224 108 IKTDILCRNWV-QGNCMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQ 183 (393)
Q Consensus 108 ~~~~i~c~~~~-~~~~~~g~~dg~i~vwd~~--~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~ 183 (393)
|...|+-+.-. .+-+.+++.||.++.|--. .+.+.+..+..|-..|.+++.+.++.++.|.+. |..++++|+++-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 33445544443 4456689999999999754 355677788889999999999999999999887 9999999998876
Q ss_pred EEEEEe---cCCceEEEEeCCC---EEEEE--cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224 184 CAGVIN---LGGEVGCMISEGP---WIFIG--VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGA 250 (393)
Q Consensus 184 ~~~~~~---~~~~~~~~~~~~~---~l~~~--~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~ 250 (393)
.+..++ .+..+....+.|. .++++ .++.+.++|-...... ...-|..+|..+.+.+- .+++....|.
T Consensus 88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence 654444 3444455555552 45554 6779999998765532 45568999999999875 7888888999
Q ss_pred EEEEEeccCC------ccccCc-----eeecCceeeEEEEE--EcCCEEEEecCCCcEEEeeCCCcceeeEecc------
Q 016224 251 ILAWKFNVTT------NCFEPA-----ASLKGHSLAVVSLV--VGANKLYSGSMDNSIRVWNLETLQCIQTLTE------ 311 (393)
Q Consensus 251 I~vwd~~~~~------~~~~~~-----~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------ 311 (393)
|.-|.....- ..+++. ..+........++. +++..+.+-+.|..|+++++++++.++.+..
T Consensus 168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~ 247 (558)
T KOG0882|consen 168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQ 247 (558)
T ss_pred eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhh
Confidence 9999877410 001111 01111222334444 4577899999999999999999887665521
Q ss_pred --------------------------Ccc-ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEE
Q 016224 312 --------------------------HTS-VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEV 348 (393)
Q Consensus 312 --------------------------~~~-~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~ 348 (393)
|.. .-+.+.|+ +++|+-++.=| |++.++.+......
T Consensus 248 ~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 248 YQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 111 11344454 67777776543 77788776654443
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.57 E-value=0.00011 Score=63.15 Aligned_cols=228 Identities=13% Similarity=0.139 Sum_probs=122.5
Q ss_pred cCcEEEecCCCeEEEEECCCCcEEE-EEecCCc---CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce
Q 016224 119 QGNCMYGEKCKFLHSWTVGDGFKLL-TQLEGHQ---KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV 194 (393)
Q Consensus 119 ~~~~~~g~~dg~i~vwd~~~~~~~~-~~l~~h~---~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 194 (393)
++.+++.-.|..|.|-...+.+..+ .+.+.++ -.=..++||||+.+||.+...|+|+++|+.. ..+..+.....
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~- 85 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMS- 85 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccc-
Confidence 4456667788888888777664332 3333332 3456799999999999999999999999865 33333322110
Q ss_pred EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeC-----C---EEEEEeCCCcEEEEEeccCC-ccccC
Q 016224 195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-----D---LLFAGTQDGAILAWKFNVTT-NCFEP 265 (393)
Q Consensus 195 ~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~-----~---~l~~~~~dg~I~vwd~~~~~-~~~~~ 265 (393)
. .......|..|.|-+ . .|++-..+|.++-|-+..++ ..+..
T Consensus 86 --~---------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e 136 (282)
T PF15492_consen 86 --F---------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE 136 (282)
T ss_pred --c---------------------------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee
Confidence 0 001122333333321 1 56666777888777764332 11222
Q ss_pred ceee--cC-ceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEE-EEeCCCc--
Q 016224 266 AASL--KG-HSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLL-SCSLDKT-- 334 (393)
Q Consensus 266 ~~~~--~~-~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~-s~s~dg~-- 334 (393)
...+ .. +...|.++.+++. +|+.|+.... +++. -++....+++-..- +.+.. +...|+.
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~ 206 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITA 206 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccc
Confidence 2222 22 3567888888754 5555553221 0000 00111122222211 22222 2222221
Q ss_pred ----EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 335 ----IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 335 ----i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
..+|.+.+.+ +.. ........+..+..+|++. +|++...+|.|.+|++++.++
T Consensus 207 ~~~~~~~~~~~~~~-~fs-~~~~~~d~i~kmSlSPdg~---~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 207 SSKRRGLLRIPSFK-FFS-RQGQEQDGIFKMSLSPDGS---LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cccccceeecccee-eee-ccccCCCceEEEEECCCCC---EEEEEEcCCeEEEEecCcchh
Confidence 1233322111 111 1123345688899988877 999999999999999998754
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.54 E-value=2.4e-05 Score=66.25 Aligned_cols=190 Identities=11% Similarity=0.015 Sum_probs=124.8
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CceEE
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGC 196 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~~~ 196 (393)
.++.|+..|...+|...+..........|...|+-+.=.- ..-.+..++.|.++++.+++-+......... .....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 4556889999999999876455555555665544332111 2234667788889999888765443333322 22334
Q ss_pred EEeCCCEEEE-EcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccc-cCcee
Q 016224 197 MISEGPWIFI-GVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF-EPAAS 268 (393)
Q Consensus 197 ~~~~~~~l~~-~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~-~~~~~ 268 (393)
+.++++++++ |....|..|.+...... ......+.-.+..|+.. .+|++.+||++.|||++...... +....
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence 4568888876 56678999988765433 22333444556677765 99999999999999998764321 22223
Q ss_pred ecCceeeEEEEEEc-C---CEEEEecCCCcEEEeeCCCcceeeEec
Q 016224 269 LKGHSLAVVSLVVG-A---NKLYSGSMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 269 ~~~~~~~v~~l~~~-~---~~l~sg~~dg~i~iwd~~~~~~~~~~~ 310 (393)
-..|.+.+....|+ + ++|+..-.-+.+.+-|+++++..+.+.
T Consensus 246 rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 34578888888886 2 356666667899999999987665553
No 291
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=8.8e-05 Score=70.58 Aligned_cols=231 Identities=13% Similarity=0.017 Sum_probs=125.8
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEE---EEEeCCC--cEEEEECCCCeEEEEEecCC--ceEEEEeCC
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL---YSGSKDE--TVRVWDCASGQCAGVINLGG--EVGCMISEG 201 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l---~s~s~dg--~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~ 201 (393)
..|.+.|.+.+ .. +.+......+.+=+|+|||+.+ ++...+| .|.+.++.+++......... ....+.++|
T Consensus 165 ~~l~~~d~dG~-~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQ-NL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCC-Cc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 46777777654 22 3344455667778999999752 3444443 57777888876554443332 334566889
Q ss_pred CEEEEEcC--C----eEEEEECCCC---ceeeecC-CCCcEEEEEEeCC--EEEE-EeCCCcEEEEEeccCCccccCcee
Q 016224 202 PWIFIGVT--N----FVKAWNTQTN---TDLSLSG-PVGQVYAMAVGND--LLFA-GTQDGAILAWKFNVTTNCFEPAAS 268 (393)
Q Consensus 202 ~~l~~~~~--~----~i~v~d~~~~---~~~~~~~-~~~~v~~l~~~~~--~l~~-~~~dg~I~vwd~~~~~~~~~~~~~ 268 (393)
+.|+...+ + .+..|++..+ ....+.. .........|+|| .|+. ...+|...+|.+...... .....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~ 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRL 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEE
Confidence 87776432 2 3444676642 3333332 2234467789998 4444 445676566654321100 11122
Q ss_pred ecCceeeEEEE--EEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEE-eC--CCcEEEE
Q 016224 269 LKGHSLAVVSL--VVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC-SL--DKTIKVW 338 (393)
Q Consensus 269 ~~~~~~~v~~l--~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~-s~--dg~i~iw 338 (393)
+..+...+... +++++.|+..+.+ ..|.+||+.+++... +......+....|+ +++|+.. .. ...|.++
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 22222233334 4457777655432 469999999887643 33333345667776 5666543 32 3468888
Q ss_pred EcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224 339 FATDSGNLEVTYTHNEEHGVLALCGMPD 366 (393)
Q Consensus 339 d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 366 (393)
|+..++. ..+..... .+...+|+|.
T Consensus 401 dl~~g~~-~~Lt~~~g--~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKT-RKIVIGSG--EKRFPSWGAF 425 (428)
T ss_pred ECCCCCE-EEeecCCC--cccCceecCC
Confidence 8865543 33332222 2445666654
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=8.9e-06 Score=77.51 Aligned_cols=250 Identities=12% Similarity=0.096 Sum_probs=149.1
Q ss_pred ceEEeeEecC--cEEEecCCCeEEEEECCCC--------------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcE
Q 016224 111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDG--------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174 (393)
Q Consensus 111 ~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~--------------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v 174 (393)
...|+.|+.+ .+..|+.||.++|-.+.+. ...-+++.||+..|.-+.|+.+.+.|-|...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 6789999854 4667999999999877632 12235778999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEec---CCceEE--EEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe
Q 016224 175 RVWDCASGQCAGVINL---GGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT 246 (393)
Q Consensus 175 ~iwd~~~~~~~~~~~~---~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~ 246 (393)
.||-+-+++-...+.. ...+.+ +..+|..+... .||.|.+=.++.++.....-.......+.|++| .++.+-
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhh
Confidence 9999877643222111 111222 22455555543 667776666666555422222233457889998 666677
Q ss_pred CCCcEEEEEeccCCcc-ccCc------eeecCceeeEEEEEEc----------CCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224 247 QDGAILAWKFNVTTNC-FEPA------ASLKGHSLAVVSLVVG----------ANKLYSGSMDNSIRVWNLETLQCIQTL 309 (393)
Q Consensus 247 ~dg~I~vwd~~~~~~~-~~~~------~~~~~~~~~v~~l~~~----------~~~l~sg~~dg~i~iwd~~~~~~~~~~ 309 (393)
..|.+.++|....-.. .+.. ..+......+..+.|. --.|+.+...|.+.|-.-.+-.....+
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence 7899999997653211 0000 0111112234455553 125888888888877654432222222
Q ss_pred ccCccceEEEEEc--CCEEEEEeCCC---------cEEEEEcCCCcceEEEEeecCCccEEEEEee
Q 016224 310 TEHTSVVMSLLCW--DQFLLSCSLDK---------TIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364 (393)
Q Consensus 310 ~~~~~~v~~l~~~--~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 364 (393)
.. .-.+....|+ |..|+.++.|. .|.+|.. -+..+..+...... +++++|-
T Consensus 256 dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~--It~lsWE 317 (1189)
T KOG2041|consen 256 DT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSC--ITGLSWE 317 (1189)
T ss_pred ec-ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCce--eeeeEEc
Confidence 21 1345666776 66788777642 4555543 23334444433333 5566653
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.50 E-value=5.9e-05 Score=68.78 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=96.0
Q ss_pred ecceEEeeEe--cCcEEEecCCC-eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224 109 KTDILCRNWV--QGNCMYGEKCK-FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (393)
Q Consensus 109 ~~~i~c~~~~--~~~~~~g~~dg-~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (393)
+..|.-..+. +...+.|..|| .|-|+|..++ .++.+...-+.|.++..+++|++++.+-....+.+.|++++...
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 3344444443 45778899999 9999999887 44566777889999999999999999998899999999998765
Q ss_pred EEEecCCce---EEEEeCCCEEEEE-cC----CeEEEEECCCCceeeecCCCCcEEEEEEeCC
Q 016224 186 GVINLGGEV---GCMISEGPWIFIG-VT----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240 (393)
Q Consensus 186 ~~~~~~~~~---~~~~~~~~~l~~~-~~----~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~ 240 (393)
..-+..... ..+.+++++++-+ -+ ..|+++|+.+++..........=.+-+|.++
T Consensus 437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCC
Confidence 433333222 2344688888876 33 4899999999998866665555556677776
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.50 E-value=5.6e-06 Score=71.36 Aligned_cols=234 Identities=14% Similarity=0.211 Sum_probs=142.9
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-E----EEEEecCC-------------ceE--EEE-e--CCCEEE
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-C----AGVINLGG-------------EVG--CMI-S--EGPWIF 205 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-~----~~~~~~~~-------------~~~--~~~-~--~~~~l~ 205 (393)
....|+++.|...|.||++|...|.|.++.-+... | ...++.+. .+. .+. + -..+|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999865432 1 11222221 111 112 2 345788
Q ss_pred EEcCCeEEEEECCCCc-------------------------------------e-------eeecCCCCcEEEEEEeCC-
Q 016224 206 IGVTNFVKAWNTQTNT-------------------------------------D-------LSLSGPVGQVYAMAVGND- 240 (393)
Q Consensus 206 ~~~~~~i~v~d~~~~~-------------------------------------~-------~~~~~~~~~v~~l~~~~~- 240 (393)
++.|.+|++|.+.... . +....|.-.+.++.++.+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8999999999876541 0 011345666778888887
Q ss_pred EEEEEeCCCcEEEEEeccCCccccCceeecCc-----eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCccee------
Q 016224 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH-----SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCI------ 306 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~------ 306 (393)
..+....|-.|.+|++......+..+ .++.| ..-|++..|++ +.+.-.+..|.|++-|++...+.
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeeccceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 55555678899999987765443322 22222 22345555653 45677778899999999843211
Q ss_pred eE----------eccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce-EEEEeec----------CC---ccEEE
Q 016224 307 QT----------LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL-EVTYTHN----------EE---HGVLA 360 (393)
Q Consensus 307 ~~----------~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~----------~~---~~v~~ 360 (393)
.. +..-...|..+.|+ |+++++-+ --+|+|||++..+.. ..+..|. .. ..-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 11223456777887 55666554 358999999865543 2222211 00 11233
Q ss_pred EEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
+.|+.+.. .+++|+..+..-+|-+
T Consensus 343 isfSgd~~---~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDK---HVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcc---cccccccccceeeecc
Confidence 45544433 6888888777777753
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=2.3e-06 Score=76.09 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=92.8
Q ss_pred EEEEEeCCCcEEEEEeccCCccccCceee--cCceeeEEEEEEcCCE--EEEecCCCcEEEeeCCCcceeeEeccCccce
Q 016224 241 LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~--l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v 316 (393)
+++++..+....++++.......++.... ......+..+..+... .-..+....+.+|....+. ...+-+|-..+
T Consensus 76 llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml 154 (390)
T KOG3914|consen 76 LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSML 154 (390)
T ss_pred EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhh
Confidence 77777777777788777654311222221 1122223333333222 2234455666777766544 34455899999
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE-eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 317 MSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY-THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 317 ~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
+.++++ +++|+++..|..|+|-.......+..+. +|.+- |..++..++ ..|+++|.|++|++||+.+|+.
T Consensus 155 ~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF--VS~isl~~~----~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF--VSTISLTDN----YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred heeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh--eeeeeeccC----ceeeecCCCCcEEEEecccCCc
Confidence 999998 6799999999999998776554444433 35554 555554433 2589999999999999999975
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=9.3e-05 Score=68.78 Aligned_cols=266 Identities=11% Similarity=0.099 Sum_probs=156.3
Q ss_pred eEEeeEecCcEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-----------CCcEEEEEC
Q 016224 112 ILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----------DETVRVWDC 179 (393)
Q Consensus 112 i~c~~~~~~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-----------dg~v~iwd~ 179 (393)
-+-+.|||-+.++.+ --.-|.+|--.+ +..++.+. |. .|.-+.|||..+||+|=+. ...+.|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~-f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGES-FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCcc-HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 356788887655433 344577886443 34555554 54 5888999999999999753 158999999
Q ss_pred CCCeEEEEEecCC------ceEEEEeCCCEEEEEcCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEeC--C
Q 016224 180 ASGQCAGVINLGG------EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGTQ--D 248 (393)
Q Consensus 180 ~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~~--d 248 (393)
.+|...+.+.... ++..+..++++++.-..+.|.||+...-..+. ..-....|....|+|. +||-=+. +
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 9999998887632 23445568899888777999999988755542 2223456778888886 3332111 1
Q ss_pred ---CcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEe----------cCCCcEEEeeCCCcceeeEeccCc
Q 016224 249 ---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSG----------SMDNSIRVWNLETLQCIQTLTEHT 313 (393)
Q Consensus 249 ---g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg----------~~dg~i~iwd~~~~~~~~~~~~~~ 313 (393)
-.+.+..+.+. +.+....-+...=..+.| +|++|..- +.-..+.|+.++....--..-.-.
T Consensus 370 ~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 370 NIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred CCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11223332222 112222223333334455 35565432 222245555555433322222345
Q ss_pred cceEEEEEc--CCEEEEEe-C--CCcEEEEEcCC-CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE---eCCCeEEE
Q 016224 314 SVVMSLLCW--DQFLLSCS-L--DKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS---CNDNSVRF 384 (393)
Q Consensus 314 ~~v~~l~~~--~~~l~s~s-~--dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~---s~dg~I~i 384 (393)
..|..++|. |+.+++-+ . ..++.+|.+.+ ......+..... .....+.|+|.+. +++.+ |..|.+.+
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~---fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGR---FVVVAALVSRRGDLEF 521 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCc---EEEEEEecccccceEE
Confidence 677788887 44443332 2 45789998873 333333222222 3467788888765 66655 45788999
Q ss_pred EeCC
Q 016224 385 YDLP 388 (393)
Q Consensus 385 wd~~ 388 (393)
+|+.
T Consensus 522 ~D~~ 525 (698)
T KOG2314|consen 522 YDTD 525 (698)
T ss_pred Eecc
Confidence 9986
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.43 E-value=2.1e-06 Score=72.09 Aligned_cols=140 Identities=11% Similarity=0.173 Sum_probs=88.5
Q ss_pred cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-----CCcEEEEECCCCeEEEEE-ecCC
Q 016224 119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCASGQCAGVI-NLGG 192 (393)
Q Consensus 119 ~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~~-~~~~ 192 (393)
...++++..||.+.+.+.+.-++..+.+..-...-.+.+....++.|.++.. -+..++|+++..+....- ....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 4567789999999999977543333333322222223333344555555432 235566665443222111 1112
Q ss_pred ceEEEE--e-CCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEecc
Q 016224 193 EVGCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 193 ~~~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~ 258 (393)
.+.++. + ...++++| .+|.+.+||.+..... .+..|+.++..+-|+|. .|+++++||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 233332 2 34556666 7789999999988655 67889999999999886 999999999999999775
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.43 E-value=0.00022 Score=73.84 Aligned_cols=262 Identities=10% Similarity=0.039 Sum_probs=154.4
Q ss_pred cceEEeeEecC--cEEEecCCCeEEEE----ECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224 110 TDILCRNWVQG--NCMYGEKCKFLHSW----TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ 183 (393)
Q Consensus 110 ~~i~c~~~~~~--~~~~g~~dg~i~vw----d~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~ 183 (393)
..|..+.|..+ .++.+..+|.|.+. +..+. .+...-.-...|.+++||||++.|+....+++|.+.. .+.+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd 152 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFD 152 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccce
Confidence 47888888765 46778899999998 54433 2333333468999999999999999999999998886 4556
Q ss_pred EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCce---------------eeecCCCCcEEEEEEeCC--EEEEEe
Q 016224 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD---------------LSLSGPVGQVYAMAVGND--LLFAGT 246 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~---------------~~~~~~~~~v~~l~~~~~--~l~~~~ 246 (393)
.+.+...... -....+.+.+|+...=.-|.-..++. -.+. ....-..|+|-+| +||+.+
T Consensus 153 ~i~E~~l~~~---~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 153 PISEVPLDSD---DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred EEEEeecCcc---ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 6665554321 11224555565443322222222221 0122 4446677889887 777766
Q ss_pred C---C---CcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecC---CCcEEEeeCCCcceeeEec----c
Q 016224 247 Q---D---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSM---DNSIRVWNLETLQCIQTLT----E 311 (393)
Q Consensus 247 ~---d---g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~----~ 311 (393)
. . ..|+||+-+. .+......-.+--.+++| +|++||+... ...|.+|. ++|..-..|. .
T Consensus 229 ~~~~~~~~R~iRVy~ReG-----~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSREG-----ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEcCCCceeEEEEECCCc-----eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 4 3 4688887552 111111111111234455 6778887664 34566666 4444444443 3
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
....|..+.|+ +..|+..-.| .|.+|...+-.- +...........+..+.|+|..+. .|...+.+|.+..+++
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~--~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL--RLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC--EEEEEecCCcEEEEEE
Confidence 45678999998 5677776554 499998765431 111112222233445889887553 4666666667765553
No 299
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.42 E-value=0.00038 Score=62.26 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=137.2
Q ss_pred EeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE-------
Q 016224 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG------- 186 (393)
Q Consensus 114 c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~------- 186 (393)
|..-..+.++.|+.+| |++++........... +...|..|...++-+.|++-+ |+.+.++++..-....
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 4455567788999998 8999984332333333 233399999998877776654 5999999987654333
Q ss_pred --------EEecCCceEEEE-----eCCCEEEEEcCCeEEEEECCCC-----ceeeecCCCCcEEEEEEeCCEEEEEeCC
Q 016224 187 --------VINLGGEVGCMI-----SEGPWIFIGVTNFVKAWNTQTN-----TDLSLSGPVGQVYAMAVGNDLLFAGTQD 248 (393)
Q Consensus 187 --------~~~~~~~~~~~~-----~~~~~l~~~~~~~i~v~d~~~~-----~~~~~~~~~~~v~~l~~~~~~l~~~~~d 248 (393)
.+.....+..+. .....++++....|.+|..... +..........+.+++|.++.++.|..+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~ 157 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK 157 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC
Confidence 111222233333 2455777788888888877653 2334445568899999999988888755
Q ss_pred CcEEEEEeccCCccccCceeec----------CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceee--EeccCccce
Q 016224 249 GAILAWKFNVTTNCFEPAASLK----------GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ--TLTEHTSVV 316 (393)
Q Consensus 249 g~I~vwd~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~v 316 (393)
+ ..+.|+.++... .+.... ....++..+..+.+.++.+. |..-...|. .|+..+ .+.- ....
T Consensus 158 ~-f~~idl~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W-~~~p 231 (275)
T PF00780_consen 158 G-FYLIDLNTGSPS--ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQW-SSAP 231 (275)
T ss_pred c-eEEEecCCCCce--EEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEc-CCch
Confidence 5 778888865321 111111 11223444555534333332 333334444 344333 2222 2355
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEE
Q 016224 317 MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTY 350 (393)
Q Consensus 317 ~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 350 (393)
.++.+...||++.+.+ .|.||++.+++.++.+.
T Consensus 232 ~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 232 QSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred hEEEEECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 6777787888887765 59999999887766655
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.39 E-value=0.0001 Score=67.81 Aligned_cols=264 Identities=11% Similarity=0.074 Sum_probs=160.0
Q ss_pred ceEEeeEecCcEEE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC---------------cE
Q 016224 111 DILCRNWVQGNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE---------------TV 174 (393)
Q Consensus 111 ~i~c~~~~~~~~~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg---------------~v 174 (393)
++....|++.+.++ ...-..|.+|.-.... .+..+. | ..|..+.|+|.++||.|=+..+ .+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~ 110 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKA-KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV 110 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchh-heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence 67778888876554 4445579999987763 444443 3 4688999999999999976543 49
Q ss_pred EEEECCCCeEEEEEecCCce------EEEEeCCCEEEEEcCCeEEEEECCCCcee--eecCC-CCcEEEEEEeCC----E
Q 016224 175 RVWDCASGQCAGVINLGGEV------GCMISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGP-VGQVYAMAVGND----L 241 (393)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~-~~~v~~l~~~~~----~ 241 (393)
.+||+.++..+..+...... .-+..+..+++--....++++++ +.... .+... ...|....++|. .
T Consensus 111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDE 189 (561)
T ss_pred eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCce
Confidence 99999999999888765433 23334555555446778999997 33322 11111 355677777775 3
Q ss_pred EEE-----EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe----c-------CCCcEEEeeCCCc
Q 016224 242 LFA-----GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG----S-------MDNSIRVWNLETL 303 (393)
Q Consensus 242 l~~-----~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg----~-------~dg~i~iwd~~~~ 303 (393)
|+. ....+++++|.+..... +....-....-..+.|+ +++|+.- . ....++|++++..
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~----l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSV----LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCe----eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 332 45677888888874421 11111111222344554 4442211 1 2356888888743
Q ss_pred ceeeEeccCccceEEEEEc--CCE--EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224 304 QCIQTLTEHTSVVMSLLCW--DQF--LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379 (393)
Q Consensus 304 ~~~~~~~~~~~~v~~l~~~--~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d 379 (393)
. +.....-.++|..+.|. ++. +++|-.+-.+.++|++.. +....... .-..+.|+|... +++.++-|
T Consensus 266 ~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~---~rNT~~fsp~~r---~il~agF~ 336 (561)
T COG5354 266 S-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQ---KRNTIFFSPHER---YILFAGFD 336 (561)
T ss_pred c-cceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCc---ccccccccCccc---EEEEecCC
Confidence 3 33333567899999996 333 445567889999998754 22222111 123455655544 77766544
Q ss_pred ---CeEEEEeCCcee
Q 016224 380 ---NSVRFYDLPSVI 391 (393)
Q Consensus 380 ---g~I~iwd~~s~~ 391 (393)
|.|-+||...-.
T Consensus 337 nl~gni~i~~~~~rf 351 (561)
T COG5354 337 NLQGNIEIFDPAGRF 351 (561)
T ss_pred ccccceEEeccCCce
Confidence 667788776543
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=1.2e-05 Score=78.57 Aligned_cols=176 Identities=13% Similarity=0.140 Sum_probs=129.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEE
Q 016224 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAV 237 (393)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~ 237 (393)
++..++-|+....+..+|+.+.+..+...... .+..+..+++++++| ..|+|.+-|..+.+.+ ++..|.+.|.++..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 34567778888889999999998888877665 466667888999998 7789999999999887 89999999999999
Q ss_pred eCCEEEEEeC---------CCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC---
Q 016224 238 GNDLLFAGTQ---------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET--- 302 (393)
Q Consensus 238 ~~~~l~~~~~---------dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~--- 302 (393)
..++|++++. |..|+|||++.... +..+.-+..+ .-+.+. ...+++.+..|...+-|..+
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 9998888876 45578999998632 2222222111 112222 45688888999999999432
Q ss_pred c-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224 303 L-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 303 ~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 341 (393)
. .-+..+......+.++.++ ++.|+.+..+|.|.+|.-+
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 2 1233333344457777666 7899999999999999743
No 302
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=0.0018 Score=57.49 Aligned_cols=236 Identities=10% Similarity=0.144 Sum_probs=142.2
Q ss_pred eeecceEEeeEecCc--EEEec---CCCeEEEEECCC--C-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEE
Q 016224 107 VIKTDILCRNWVQGN--CMYGE---KCKFLHSWTVGD--G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVW 177 (393)
Q Consensus 107 ~~~~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~--~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iw 177 (393)
......+-+.|+++. ++++- .+|.|..|.++. | ...+.....-..+-+.+++++++++|+++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 334455777888775 33422 356777776663 4 1222222223344488999999999999865 5899999
Q ss_pred ECCC-CeE---EEEEecCC------------ceEEEEeCCCEEEEE--cCCeEEEEECCCCcee----eecCCCCcEEEE
Q 016224 178 DCAS-GQC---AGVINLGG------------EVGCMISEGPWIFIG--VTNFVKAWNTQTNTDL----SLSGPVGQVYAM 235 (393)
Q Consensus 178 d~~~-~~~---~~~~~~~~------------~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~----~~~~~~~~v~~l 235 (393)
-+++ |.. +..+.+.+ ....+.+++++|++. ....|.+|++..+... .......-...|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9865 432 22332221 233455789888886 4458999999977654 222455667899
Q ss_pred EEeCC---EEEEEeCCCcEEEEEeccCCccccCceeec-------C-ceeeEEEEEEcCCEEEEecC-CCcEEEeeCCC-
Q 016224 236 AVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK-------G-HSLAVVSLVVGANKLYSGSM-DNSIRVWNLET- 302 (393)
Q Consensus 236 ~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-------~-~~~~v~~l~~~~~~l~sg~~-dg~i~iwd~~~- 302 (393)
.|+|+ ..++.--+++|.+|........++.++.+. + ....-..|+.+|++|+++.. ...|.+|.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999 344556789999999987544333333321 1 12223445556788777653 44787877653
Q ss_pred -cce--eeEeccCccceEEEEEc--CCEEEEEeCC-CcEEEEEcCC
Q 016224 303 -LQC--IQTLTEHTSVVMSLLCW--DQFLLSCSLD-KTIKVWFATD 342 (393)
Q Consensus 303 -~~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~d-g~i~iwd~~~ 342 (393)
+++ +.....+...-..+.++ +++|+++..+ ..|.+|....
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 322 11222222223444444 7888888775 4688887653
No 303
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00013 Score=71.19 Aligned_cols=213 Identities=11% Similarity=0.174 Sum_probs=133.5
Q ss_pred ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC-EEEEEecCCCCEEEEEeCCCc-----EEEEECCCCeE
Q 016224 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPSGSDKLYSGSKDET-----VRVWDCASGQC 184 (393)
Q Consensus 111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~-I~~i~~s~~~~~l~s~s~dg~-----v~iwd~~~~~~ 184 (393)
.+.|+.-+.+.++.|+.+|.|.+.+ .+++.++.++.+... |..+....+..+|++.+.|+. |+||+++.-+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 6788887888889999999987765 566777889988877 555555555579999888764 89999875421
Q ss_pred EEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcc
Q 016224 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC 262 (393)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~ 262 (393)
... ..++ +.++++.. .......++.+++++.+ .+++|-.+|.|..+.-.-....
T Consensus 105 n~s------P~c~------------~~~ri~~~------~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 105 NNS------PQCL------------YEHRIFTI------KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred CCC------ccee------------eeeeeecc------CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 100 0000 00011110 11123567888888887 8899999999998854322111
Q ss_pred ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce-eeEeccCccceEEEEEc-CCE-EEEEeCCCcEEE
Q 016224 263 FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSLLCW-DQF-LLSCSLDKTIKV 337 (393)
Q Consensus 263 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~-~~~-l~s~s~dg~i~i 337 (393)
.........-..+|+.+.+. +..++-...-..|.+|.+....+ ...+..|.....|..++ +.. ++++ .+..|.+
T Consensus 161 gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~f 239 (933)
T KOG2114|consen 161 GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYF 239 (933)
T ss_pred ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEE
Confidence 11122223345688888874 44322222345789999884442 45577888888888888 333 4443 3457999
Q ss_pred EEcCCCcceEEEE
Q 016224 338 WFATDSGNLEVTY 350 (393)
Q Consensus 338 wd~~~~~~~~~~~ 350 (393)
|+....+....+.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9987555444443
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.29 E-value=2.7e-06 Score=51.07 Aligned_cols=37 Identities=38% Similarity=0.564 Sum_probs=31.7
Q ss_pred cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEE
Q 016224 303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (393)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd 339 (393)
++++.++.+|...|.+++|+ +.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788888999999999988 56899999999999997
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=8.2e-07 Score=86.21 Aligned_cols=189 Identities=15% Similarity=0.232 Sum_probs=124.7
Q ss_pred eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC--CcEEEEECCC-
Q 016224 107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD--ETVRVWDCAS- 181 (393)
Q Consensus 107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d--g~v~iwd~~~- 181 (393)
.+....+|++|+.+ .+.+|+..|.|+++++.+| .......+|.++|+-|.=+.+|..+++.+.- --..+|++.+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence 34468899999965 5678999999999999999 7778889999999999999999877765543 3578999864
Q ss_pred CeEEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-e-ecC---CCCcEEEEEEeCC-EEEEEeCCCcEEEE
Q 016224 182 GQCAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-S-LSG---PVGQVYAMAVGND-LLFAGTQDGAILAW 254 (393)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~-~~~---~~~~v~~l~~~~~-~l~~~~~dg~I~vw 254 (393)
+...+++.....+...-. ...-+.| ......+||++++..+ + +.+ ....-....|+|. .|+. .|| .+|
T Consensus 1178 ~~~~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLW 1252 (1516)
T KOG1832|consen 1178 GGPRHSFDEDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLW 1252 (1516)
T ss_pred cCccccccccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eee
Confidence 444555543333322222 2223333 4467889999998765 2 221 2223366778887 4433 355 379
Q ss_pred EeccCCccccCceeecCceeeE-EEEEEcCCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224 255 KFNVTTNCFEPAASLKGHSLAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 255 d~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 310 (393)
|++.. +.++.+......+ -.+.++++.++..+ .|||+++.+.+++..
T Consensus 1253 DvR~~----~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1253 DVRIP----EAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred eeccH----HHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 99876 3344444332221 12345566777665 489999998877664
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.26 E-value=1.6e-05 Score=68.55 Aligned_cols=231 Identities=11% Similarity=0.217 Sum_probs=140.1
Q ss_pred eecceEEeeEecCcEE--EecCCCeEEEEECCCC----cEEEEEecCCc------------CCEEEEEecCCC--CEEEE
Q 016224 108 IKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDG----FKLLTQLEGHQ------------KVVSGITLPSGS--DKLYS 167 (393)
Q Consensus 108 ~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~----~~~~~~l~~h~------------~~I~~i~~s~~~--~~l~s 167 (393)
....|+.+.|...+.+ +|...|.|.++.-... .+....+++|. ..|..|.|-.++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3447888888876555 4556699999975533 24455677775 457888885543 45666
Q ss_pred EeCCCcEEEEECCCCeE--EE-------------------------EEecCCceE-----------------E--EEeCC
Q 016224 168 GSKDETVRVWDCASGQC--AG-------------------------VINLGGEVG-----------------C--MISEG 201 (393)
Q Consensus 168 ~s~dg~v~iwd~~~~~~--~~-------------------------~~~~~~~~~-----------------~--~~~~~ 201 (393)
.+.|.+|++|.+..... +. .+..+..+. + +-++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998854311 00 000011111 1 11355
Q ss_pred CEEEEEcCCeEEEEECCCCc----eeeecCC-----CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCcee-
Q 016224 202 PWIFIGVTNFVKAWNTQTNT----DLSLSGP-----VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAAS- 268 (393)
Q Consensus 202 ~~l~~~~~~~i~v~d~~~~~----~~~~~~~-----~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~- 268 (393)
..++++.+=.|.+|++.-.. .+.+..| ..-|++..|+|. .+.-.+..|.|++-|+++...+......
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 66667777799999986432 1222332 345778888886 7778889999999999965432211111
Q ss_pred -----------ecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC-cceeeEeccCcc------------ce---EEE
Q 016224 269 -----------LKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTS------------VV---MSL 319 (393)
Q Consensus 269 -----------~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~------------~v---~~l 319 (393)
+.+-...|..+.|+ +.++++- .--+|+|||++. ..++.++.-|.. .| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 11223445666675 3355544 456899999985 456777654422 22 345
Q ss_pred EEc--CCEEEEEeCCCcEEEEE
Q 016224 320 LCW--DQFLLSCSLDKTIKVWF 339 (393)
Q Consensus 320 ~~~--~~~l~s~s~dg~i~iwd 339 (393)
.|+ ...+++|+.....-||-
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EecCCcccccccccccceeeec
Confidence 555 34677777776666665
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.00012 Score=65.59 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=65.8
Q ss_pred EEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE---eCCCEEEEE-cCCeEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI---SEGPWIFIG-VTNFVKAW 215 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~-~~~~i~v~ 215 (393)
+....+..|...|.+|+|+|..+ +|..++.+.+|+|.|+++..++..+.....+-+.. .+..++.+| ..|.|.+|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence 44456677889999999999776 78899999999999999999999888776654433 356677888 67899999
Q ss_pred ECCCCc
Q 016224 216 NTQTNT 221 (393)
Q Consensus 216 d~~~~~ 221 (393)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998765
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.24 E-value=0.00085 Score=61.98 Aligned_cols=245 Identities=11% Similarity=0.103 Sum_probs=144.1
Q ss_pred CeEEEEECCCCcEEEEEecCCcCC--EE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEE----EEEecCCceEEE--Ee
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKV--VS-GITLPSGSDKLYSGSKDETVRVWDCASGQCA----GVINLGGEVGCM--IS 199 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~--I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~----~~~~~~~~~~~~--~~ 199 (393)
..+.+||..++ .++..+..-..+ .. -+.|+-+..++|-.. ...+.|+++ ++... ..+.. ..+..+ .+
T Consensus 108 n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~-~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRP-VGILDFSISP 183 (561)
T ss_pred CceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccc-cceeeEEecC
Confidence 36999999999 888888877666 55 678888888777653 347899997 33221 11111 112111 12
Q ss_pred --CCCEEEE------EcCCeEEEEECCCCceeeecC-CCCcEEEEEEeCC--EEE--E--Ee-------CCCcEEEEEec
Q 016224 200 --EGPWIFI------GVTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND--LLF--A--GT-------QDGAILAWKFN 257 (393)
Q Consensus 200 --~~~~l~~------~~~~~i~v~d~~~~~~~~~~~-~~~~v~~l~~~~~--~l~--~--~~-------~dg~I~vwd~~ 257 (393)
++..|+. +....+++|.+..+..+.... ....=..+.|.+. +|+ + -. ....+++++++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 2233332 245688999988766552211 1112234455443 111 1 11 12457788877
Q ss_pred cCCccccCceeecCceeeEEEEEEc--CCE--EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC
Q 016224 258 VTTNCFEPAASLKGHSLAVVSLVVG--ANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL 331 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~--l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~ 331 (393)
... +.....-.++|..+.|+ ++. +++|-.+-.+.++|++.. +...+. ...-..+.|+ .++++.++.
T Consensus 264 e~~-----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF 335 (561)
T COG5354 264 ERS-----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGF 335 (561)
T ss_pred ccc-----cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecC
Confidence 432 12222457789999995 344 555678999999999865 444443 3333444455 678888776
Q ss_pred C---CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe------CCCeEEEEeCCcee
Q 016224 332 D---KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC------NDNSVRFYDLPSVI 391 (393)
Q Consensus 332 d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s------~dg~I~iwd~~s~~ 391 (393)
| |.|-+||......+.... . .....-+.|+|+++ ++.+.. .|..|.|||+..-+
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~--~-~~n~s~~~wspd~q---F~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAF--N-GLNTSYCDWSPDGQ---FYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CccccceEEeccCCceEEEEEe--e-cCCceEeeccCCce---EEEecCCCcccccCcceEEEEecCch
Confidence 5 679999986543332111 1 12244456877766 676653 38889999986543
No 309
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.00091 Score=63.72 Aligned_cols=213 Identities=13% Similarity=0.043 Sum_probs=116.5
Q ss_pred CcEEEEECCCCeEEEEEecCCc--eEEEEeCCCE---EEEE-cC--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--E
Q 016224 172 ETVRVWDCASGQCAGVINLGGE--VGCMISEGPW---IFIG-VT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L 241 (393)
Q Consensus 172 g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~---l~~~-~~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~ 241 (393)
..|.+.|.+.+........... .-.+.++++. ++++ .+ ..|.+.++.+++...+....+......|+|| .
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 3677777765544332222222 2346678763 3344 22 3789999998887766666666677899998 4
Q ss_pred EEE-EeCCC----cEEEEEeccCCccccCceeecCceeeEE--EEEEcCCEEEEec-CCCcEEEe--eCCC-cceeeEec
Q 016224 242 LFA-GTQDG----AILAWKFNVTTNCFEPAASLKGHSLAVV--SLVVGANKLYSGS-MDNSIRVW--NLET-LQCIQTLT 310 (393)
Q Consensus 242 l~~-~~~dg----~I~vwd~~~~~~~~~~~~~~~~~~~~v~--~l~~~~~~l~sg~-~dg~i~iw--d~~~-~~~~~~~~ 310 (393)
|+. ...+| .+..|++..+... .............. +++++++.|+..+ .+|...|| ++.. +.....+.
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g-~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIG-KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCC-cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 444 33333 2334666542110 11112211111222 3445677666544 46655555 4432 23344454
Q ss_pred cCccceEEEEEc--CCEEEEEeCC---CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEE-EEeC--CCeE
Q 016224 311 EHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL-CSCN--DNSV 382 (393)
Q Consensus 311 ~~~~~v~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-s~s~--dg~I 382 (393)
.+...+....|+ ++.|+..+.+ ..|.+||+.+++. ..+... ...+....|+|++. .|+ ++.. ...|
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~--~~~~~~p~wSpDG~---~L~f~~~~~g~~~L 397 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTS--PENKESPSWAIDSL---HLVYSAGNSNESEL 397 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCC--CCCccceEECCCCC---EEEEEECCCCCceE
Confidence 444555667777 6777765543 3699999976654 333322 22355678887754 554 4433 3568
Q ss_pred EEEeCCcee
Q 016224 383 RFYDLPSVI 391 (393)
Q Consensus 383 ~iwd~~s~~ 391 (393)
.+|++.+++
T Consensus 398 ~~vdl~~g~ 406 (428)
T PRK01029 398 YLISLITKK 406 (428)
T ss_pred EEEECCCCC
Confidence 889987764
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.0017 Score=61.49 Aligned_cols=203 Identities=12% Similarity=0.043 Sum_probs=114.9
Q ss_pred CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCE-EEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCC
Q 016224 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGP 202 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~-l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~ 202 (393)
..|.+=|.+.. .. +.+.... .+..-.|+||++. ++..+.+ ..|.++|+.+++.......... ...+.++++
T Consensus 169 ~~l~~~d~dg~-~~-~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQ-KVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ce-eEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 35555555433 22 2232233 7788999999984 6644443 5799999998877665554433 344667887
Q ss_pred EEEEE----cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC--cEEEEEeccCCccccCceeecCce
Q 016224 203 WIFIG----VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHS 273 (393)
Q Consensus 203 ~l~~~----~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg--~I~vwd~~~~~~~~~~~~~~~~~~ 273 (393)
.++.. .+..|.++++.++....+..+........|+|| ++++....+ .|+++|+..+.. +.+. ..+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt-~~g~~ 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVV-FHGKN 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCc-cCCCc
Confidence 77653 224789999988876666555544445679988 444444444 467777765532 1111 11211
Q ss_pred eeEEEEEEcCCEEEEecCC---------CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC-Cc--EEEEE
Q 016224 274 LAVVSLVVGANKLYSGSMD---------NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD-KT--IKVWF 339 (393)
Q Consensus 274 ~~v~~l~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d-g~--i~iwd 339 (393)
...+++++++|+..... ..|.+.|+.+++. ..+.... ......|+ |+.|+..+.+ +. |.+.+
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 23566677776554432 3688889887764 3443321 22234455 5555444332 22 44555
Q ss_pred cC
Q 016224 340 AT 341 (393)
Q Consensus 340 ~~ 341 (393)
+.
T Consensus 399 l~ 400 (419)
T PRK04043 399 LN 400 (419)
T ss_pred cC
Confidence 53
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.22 E-value=0.0031 Score=55.33 Aligned_cols=201 Identities=14% Similarity=0.155 Sum_probs=125.8
Q ss_pred EeeEec--CcEEE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEec-CCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224 114 CRNWVQ--GNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (393)
Q Consensus 114 c~~~~~--~~~~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (393)
+..|.+ +.++. -...+.|+.|+..++......+.+ ...+++. ++ ..|+.+..++ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 345664 34444 446789999999887333333332 6777887 56 5566666554 5556999987655554
Q ss_pred c--CC-c---e--EEEEeCCCEEEEEcC---------CeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224 190 L--GG-E---V--GCMISEGPWIFIGVT---------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG 249 (393)
Q Consensus 190 ~--~~-~---~--~~~~~~~~~l~~~~~---------~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg 249 (393)
. .. . . ..+.++|.+.++... +.|..++.. ++...........+.|+|+++ ++++-+..+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 4 11 1 1 233467876666422 457777777 555445555667889999998 455777888
Q ss_pred cEEEEEeccCCcccc---CceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 250 AILAWKFNVTTNCFE---PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~---~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
.|..+++........ ....+.......-.++++ +++.++....+.|.++|.+ ++.+..+......+++++|-
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 999999975432111 112222222235556665 6666666678999999988 89888888776688999995
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=1.2e-05 Score=77.55 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=109.6
Q ss_pred CCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeE
Q 016224 229 VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQT 308 (393)
Q Consensus 229 ~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 308 (393)
...+.+++++..+|+.|+.+|.|++++.... + .....|... ...|.++++++.||+|.|..+-+.+...+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-----~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-----P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc-----c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567788888889999999999999987653 2 223334333 55688999999999999999988887777
Q ss_pred eccCccceEEEEEcC-------CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe
Q 016224 309 LTEHTSVVMSLLCWD-------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381 (393)
Q Consensus 309 ~~~~~~~v~~l~~~~-------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~ 381 (393)
+.. ..++.++++++ +.+++|+..| +.++.-+-.+.......+.....|.++.|.-+ +||-++.+|
T Consensus 109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-----lIAWand~G- 180 (846)
T KOG2066|consen 109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-----LIAWANDDG- 180 (846)
T ss_pred Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-----EEEEecCCC-
Confidence 763 45788888874 4789999988 88775443333444455667778999999633 888887776
Q ss_pred EEEEeCCceee
Q 016224 382 VRFYDLPSVII 392 (393)
Q Consensus 382 I~iwd~~s~~l 392 (393)
|++||+++.+.
T Consensus 181 v~vyd~~~~~~ 191 (846)
T KOG2066|consen 181 VKVYDTPTRQR 191 (846)
T ss_pred cEEEeccccce
Confidence 79999988653
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.15 E-value=0.0044 Score=54.36 Aligned_cols=200 Identities=12% Similarity=0.074 Sum_probs=120.4
Q ss_pred EEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe-CCCEEEEEcCCeEEEEECCCCceeeecC-----
Q 016224 155 GITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDLSLSG----- 227 (393)
Q Consensus 155 ~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~~~~~----- 227 (393)
++.|.+ ++.++++--..+.|..|+..+++.. .+....+...... .+..++++..+.+.++|..+++...+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence 567887 6666666667899999999887654 3555555555555 4556666656666777999886552221
Q ss_pred -CCCcEEEEEEeCC--EEEEEeCC--------CcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEE-EEecCCC
Q 016224 228 -PVGQVYAMAVGND--LLFAGTQD--------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL-YSGSMDN 293 (393)
Q Consensus 228 -~~~~v~~l~~~~~--~l~~~~~d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg 293 (393)
.....+.++++++ +.++.... |.|..++.. +. . ......-.....|+++ ++.| ++-+..+
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----V-TVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----E-EEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----E-EEEecCcccccceEECCcchheeecccccc
Confidence 3456888999988 44444332 446666655 21 1 1111122233455554 5555 4677788
Q ss_pred cEEEeeCCCcc-------eeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEee
Q 016224 294 SIRVWNLETLQ-------CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364 (393)
Q Consensus 294 ~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 364 (393)
.|..+++.... .+..+.......-.++++ +++.++....+.|.++|.. ++.+..+.... ..+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEE
Confidence 99999985321 122222222335677777 6666676778999999986 66555555442 258888884
No 314
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.11 E-value=0.0049 Score=55.05 Aligned_cols=219 Identities=16% Similarity=0.145 Sum_probs=124.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCceEE--EEeCCCEEEEEcCCeEEEEECCCCceee------------
Q 016224 160 SGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDLS------------ 224 (393)
Q Consensus 160 ~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~~------------ 224 (393)
..++.|+.|..+| |.++++.. ........... +.. +.++-+.+++-.|+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~-I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS-ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecce-EEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccc
Confidence 3578899999888 89999833 33333332222 333 3356667777677999999987654432
Q ss_pred ---ecCCCCcEEEEE-E---eCCEEEEEeCCCcEEEEEeccCCccc-cCceeecCceeeEEEEEEcCCEEEEecCCCcEE
Q 016224 225 ---LSGPVGQVYAMA-V---GNDLLFAGTQDGAILAWKFNVTTNCF-EPAASLKGHSLAVVSLVVGANKLYSGSMDNSIR 296 (393)
Q Consensus 225 ---~~~~~~~v~~l~-~---~~~~l~~~~~dg~I~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~ 296 (393)
.......+..++ . .....++.....+|.+|........+ ....++. -...+.++.|.++.++.|..++ ..
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FY 160 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eE
Confidence 112223344444 1 11133344445599999988754433 3444443 3366788888889888887554 88
Q ss_pred EeeCCCcceeeEeccC------------ccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceE-EEEeecCCccEEEEE
Q 016224 297 VWNLETLQCIQTLTEH------------TSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLE-VTYTHNEEHGVLALC 362 (393)
Q Consensus 297 iwd~~~~~~~~~~~~~------------~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~ 362 (393)
+.|+.++.....+... ..++..+... +.+|++ . |..-.+.|. .++... ....-.. ....+.
T Consensus 161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~~i~W~~--~p~~~~ 235 (275)
T PF00780_consen 161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-Y-DNIGVFVNK-NGEPSRKSTIQWSS--APQSVA 235 (275)
T ss_pred EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE-e-cceEEEEcC-CCCcCcccEEEcCC--chhEEE
Confidence 8999877654443211 1234445555 444443 2 333333343 333322 1111111 233444
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEEeCCceeeC
Q 016224 363 GMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC 393 (393)
Q Consensus 363 ~~~~~~~~~~l~s~s~dg~I~iwd~~s~~lc 393 (393)
+. .+ +|+.... +.|.||++.+++++
T Consensus 236 ~~--~p---yli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 236 YS--SP---YLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred EE--CC---EEEEECC-CEEEEEECcCCcEE
Confidence 42 34 7777766 45999999998763
No 315
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.10 E-value=0.0006 Score=63.71 Aligned_cols=233 Identities=16% Similarity=0.196 Sum_probs=117.6
Q ss_pred CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE-EEecCCceEEEEeCCCEEEEEcCCeEEEEECCC---Cc------
Q 016224 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT---NT------ 221 (393)
Q Consensus 152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~---~~------ 221 (393)
.|+.|.|.++...|+.|...|.|.||.....+... .-.....-..... +...++.-.+-|+.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR-----FSLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S-------GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc-----ccccCCCcceEEehhhCCcccccccC
Confidence 58999999999999999999999999876544332 0000000000000 000000111122211 00
Q ss_pred e-eeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCcccc-Ccee---ecCceeeEEEEEEc-----CC-----E
Q 016224 222 D-LSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFE-PAAS---LKGHSLAVVSLVVG-----AN-----K 285 (393)
Q Consensus 222 ~-~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~-~~~~---~~~~~~~v~~l~~~-----~~-----~ 285 (393)
. ..+....++|++++.+.- ++++|.++|.+.|.|++.....+. .+.. .......++++.|. ++ .
T Consensus 78 P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred chhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 1 133445789999999755 999999999999999987643322 0111 11133456666663 21 5
Q ss_pred EEEecCCCcEEEeeCC--C-cce----eeEeccCccceEEEEEc----C-------------------CEEEEEeCCCcE
Q 016224 286 LYSGSMDNSIRVWNLE--T-LQC----IQTLTEHTSVVMSLLCW----D-------------------QFLLSCSLDKTI 335 (393)
Q Consensus 286 l~sg~~dg~i~iwd~~--~-~~~----~~~~~~~~~~v~~l~~~----~-------------------~~l~s~s~dg~i 335 (393)
+++|+..|.+.+|.+. . +.. ......+.+++..+..- + .-++....+..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 8999999999999874 1 211 12222455666655432 0 124444557789
Q ss_pred EEEEcCCCcceEEEEeecCCccEEEEEeeeC--CCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPD--SEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
+++...+.+...... .....+..+++.+. ...+..|++-..+|.|++|.++..+
T Consensus 238 rv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp EEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 999987766554444 22223344444321 1133378888999999999999865
No 316
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.08 E-value=0.0018 Score=59.44 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=122.8
Q ss_pred EEeCCCEEEEEcCCeEEEEECCCCceeeecCC-------C--CcEE------EEEE-eCCEEEEEeCCCcEEEEEeccCC
Q 016224 197 MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-------V--GQVY------AMAV-GNDLLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 197 ~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~-------~--~~v~------~l~~-~~~~l~~~~~dg~I~vwd~~~~~ 260 (393)
..++|+.++....|.|.+||..+.....+.-. . ..+. ..+. +.++++..+ -|...+.+...+-
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe
Confidence 44689999999999999999988765432211 0 0111 1112 223555554 4556665544331
Q ss_pred ccccCceeecCceeeEE--EEEEcCCEEEEecCCC-cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcE
Q 016224 261 NCFEPAASLKGHSLAVV--SLVVGANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTI 335 (393)
Q Consensus 261 ~~~~~~~~~~~~~~~v~--~l~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i 335 (393)
....+|...|. .+..+++-++.|..|| .+-|+|.++++ +..+...-+.|.++..+ |++++.+.....|
T Consensus 353 ------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 353 ------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred ------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence 11123444443 3444567899999999 99999998776 45566677788888877 6789999888899
Q ss_pred EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC----CeEEEEeCCceee
Q 016224 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND----NSVRFYDLPSVII 392 (393)
Q Consensus 336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d----g~I~iwd~~s~~l 392 (393)
-+.|+.++..... ......-++.+.|+|++. +||-+--+ ..|+++|+..+++
T Consensus 426 ~vididngnv~~i--dkS~~~lItdf~~~~nsr---~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 426 WVIDIDNGNVRLI--DKSEYGLITDFDWHPNSR---WIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEecCCCeeEe--cccccceeEEEEEcCCce---eEEEecCcceeeeeEEEEecCCCeE
Confidence 9999987754332 233345699999999877 88866544 4689999998775
No 317
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.07 E-value=0.0072 Score=55.35 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=114.2
Q ss_pred CeEEEEECCCCcEEEEEecC-CcCCEEEE---EecCC----CCEEEEEeC----------CCcEEEEECCCC-------e
Q 016224 129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGI---TLPSG----SDKLYSGSK----------DETVRVWDCASG-------Q 183 (393)
Q Consensus 129 g~i~vwd~~~~~~~~~~l~~-h~~~I~~i---~~s~~----~~~l~s~s~----------dg~v~iwd~~~~-------~ 183 (393)
..|++.|..+. +.+.++.- ....++++ .|..+ ..+|+.|.. .|.|.++++.+. +
T Consensus 2 s~i~l~d~~~~-~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTF-EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTS-SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCC-eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 35788887665 45444432 12334444 34332 467777753 289999999884 3
Q ss_pred EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCc-ee--eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCC
Q 016224 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT-DL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~-~~--~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~ 260 (393)
.+......+++.++..-+..++++..+.|.+|++...+ .. ........+.++....+++++|.....|.++.++...
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence 34455667888888876777999999999999999888 54 3333445889999999999999999999999777643
Q ss_pred ccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCC
Q 016224 261 NCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLE 301 (393)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~ 301 (393)
..+..+.. ......++++.+ +++.++.+..+|.|.++...
T Consensus 161 ~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 161 NKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 22222222 123445666655 55699999999999998775
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.0024 Score=60.58 Aligned_cols=184 Identities=10% Similarity=0.074 Sum_probs=104.5
Q ss_pred ceEEeeEecCc---EEEecC---CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCC--CcEEEEECCC
Q 016224 111 DILCRNWVQGN---CMYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKD--ETVRVWDCAS 181 (393)
Q Consensus 111 ~i~c~~~~~~~---~~~g~~---dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~d--g~v~iwd~~~ 181 (393)
.+..-.|++++ +++.+. ...|+++|+.++ +... +....+.+....|+|||+.|+.. +.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-KKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-cEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 55678899874 333232 457999999887 3332 22345566678899999877643 333 4678888888
Q ss_pred CeEEEEEecCC--ceEEEEeCCCEEEEEcCC----eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC-----
Q 016224 182 GQCAGVINLGG--EVGCMISEGPWIFIGVTN----FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD----- 248 (393)
Q Consensus 182 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~----~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d----- 248 (393)
++......... ....+.++++.|+...+. .|.+.|+.+++...+...... ...|+|+ .|+.....
T Consensus 267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 76554333332 224566788766654332 788899988877533322111 2478887 44443332
Q ss_pred ----CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC-C--cEEEeeCCC
Q 016224 249 ----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-N--SIRVWNLET 302 (393)
Q Consensus 249 ----g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-g--~i~iwd~~~ 302 (393)
..|.+.|+..+.. +.+.. .+ ...-..++++++.|+..+.+ + .|.+.++..
T Consensus 345 ~~~~~~I~v~d~~~g~~--~~LT~-~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI--RRLTA-NG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCCe--EECCC-CC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3677788766532 11111 11 11223455567765544322 2 355666643
No 319
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.03 E-value=0.0017 Score=59.56 Aligned_cols=135 Identities=13% Similarity=0.165 Sum_probs=92.8
Q ss_pred CcEEEEEeccC-C--ccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcc-eeeEec-cCccceEEEEEcC
Q 016224 249 GAILAWKFNVT-T--NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ-CIQTLT-EHTSVVMSLLCWD 323 (393)
Q Consensus 249 g~I~vwd~~~~-~--~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~l~~~~ 323 (393)
|.|.++++... . ...+.+... ...++|+++..-+++|+++. .+.|.+|++...+ ....-. .....+.++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 88999999884 1 112222222 34678899887777755554 5889999998766 333222 2334788888889
Q ss_pred CEEEEEeCCCcEEEEEcCC-CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 324 QFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 324 ~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
++++.|.....+.++.... ...+..+........++++.+.++.+ .++.+..+|.|.++..+
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~---~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED---TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS---EEEEEETTSEEEEEEE-
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc---EEEEEcCCCeEEEEEEC
Confidence 9999999999999886654 33466666656667788998887653 79999999999999876
No 320
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.02 E-value=0.018 Score=56.40 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=111.2
Q ss_pred ecCcEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEE----------EEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSG----------ITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~----------i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
..+.+++++.++.|+-.|..++ +.+-++.... ..+.. +++ .+..++.++.|+.|.-.|.++|+.+.
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 3566777888999999999999 6665544211 11111 122 23567888899999999999999988
Q ss_pred EEecCCce-------EEEEeCCCEEEEEc------CCeEEEEECCCCcee-eecCCCC----------------------
Q 016224 187 VINLGGEV-------GCMISEGPWIFIGV------TNFVKAWNTQTNTDL-SLSGPVG---------------------- 230 (393)
Q Consensus 187 ~~~~~~~~-------~~~~~~~~~l~~~~------~~~i~v~d~~~~~~~-~~~~~~~---------------------- 230 (393)
........ .-+..++.+++... ++.|..+|.++++.+ .......
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 77643211 11223454444322 578999999999876 2211100
Q ss_pred ---------cEE-EEEEeCC--EEEEEeCC-----C-----------cEEEEEeccCCccccCceeecCc---------e
Q 016224 231 ---------QVY-AMAVGND--LLFAGTQD-----G-----------AILAWKFNVTTNCFEPAASLKGH---------S 273 (393)
Q Consensus 231 ---------~v~-~l~~~~~--~l~~~~~d-----g-----------~I~vwd~~~~~~~~~~~~~~~~~---------~ 273 (393)
.+. .++++++ +++.+..+ + +|.-.|+++++..+... ...| .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q--~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ--TTPHDEWDYDGVNE 302 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee--CCCCCCccccCCCC
Confidence 111 2355655 55555422 2 56777777775432211 1111 1
Q ss_pred eeEEEEEEcCC---EEEEecCCCcEEEeeCCCccee
Q 016224 274 LAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCI 306 (393)
Q Consensus 274 ~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~ 306 (393)
..+..+..+++ .++.+..+|.+.+.|.++++++
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 12233334555 6889999999999999999886
No 321
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.98 E-value=0.022 Score=59.34 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=154.8
Q ss_pred eecceEEeeEecCcEEE--e----cC--CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEE
Q 016224 108 IKTDILCRNWVQGNCMY--G----EK--CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRV 176 (393)
Q Consensus 108 ~~~~i~c~~~~~~~~~~--g----~~--dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~i 176 (393)
.+..-..+.|-.|+.++ . .. -..|+||+-+ | .+..+-+.-.+--.+++|-|.|++||+... .-.|.+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence 34456778898775432 1 12 3689999965 5 555544444444567899999999998865 345666
Q ss_pred EECCCCeEEEEEecCC-----ce--EEEEeCCCEEEEEcCCeEEEEECCCCcee---ee-cCCCCcEEEEEEeCC---EE
Q 016224 177 WDCASGQCAGVINLGG-----EV--GCMISEGPWIFIGVTNFVKAWNTQTNTDL---SL-SGPVGQVYAMAVGND---LL 242 (393)
Q Consensus 177 wd~~~~~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~---~~-~~~~~~v~~l~~~~~---~l 242 (393)
|.- +|..-..|.... .+ ..+.+++.+|++-....|.+|...+-.-. .+ ......+..+.|++. .|
T Consensus 286 fEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 286 FER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred Eec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 663 455555555432 22 23446899999987777999998876533 11 222334555899886 67
Q ss_pred EEEeCCCcEEEEEeccCCccc--------cCcee-----------------------ecCceeeEEEEEEcC--CEEEEe
Q 016224 243 FAGTQDGAILAWKFNVTTNCF--------EPAAS-----------------------LKGHSLAVVSLVVGA--NKLYSG 289 (393)
Q Consensus 243 ~~~~~dg~I~vwd~~~~~~~~--------~~~~~-----------------------~~~~~~~v~~l~~~~--~~l~sg 289 (393)
...+.+|.+..+++.-..... ..... .-.-...|.++++.. ..+++-
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 777777777665543211000 00000 011245677778764 359999
Q ss_pred cCCCcEEEeeCCCcce--------eeEec----------cCccceEEEEEc-CC-EEEEEeC---CCcEEEEEcCCCcce
Q 016224 290 SMDNSIRVWNLETLQC--------IQTLT----------EHTSVVMSLLCW-DQ-FLLSCSL---DKTIKVWFATDSGNL 346 (393)
Q Consensus 290 ~~dg~i~iwd~~~~~~--------~~~~~----------~~~~~v~~l~~~-~~-~l~s~s~---dg~i~iwd~~~~~~~ 346 (393)
..||.|.+|....... ...+. .....+..+.|. .. +++.... ...+.++++......
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Confidence 9999999998543211 11111 123345667776 33 3333333 357888887544322
Q ss_pred EEEEe-ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 347 EVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 347 ~~~~~-~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
..... ......+..+...+... .++.-..||.|...+..
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~~~G~v~~~~~~ 564 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSPDSG---SLYIQTNDGKVFQLSSD 564 (928)
T ss_pred eeEEEEeccCceEEEEeeCCCCc---EEEEEECCCEEEEeecC
Confidence 22222 22222333333333221 36666678888765544
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=9.4e-05 Score=67.07 Aligned_cols=204 Identities=13% Similarity=0.064 Sum_probs=132.2
Q ss_pred CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224 149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP 228 (393)
Q Consensus 149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~ 228 (393)
|.+.|+.+... -.+++.+++.||.++.|.-..-.-+..+ ..+..|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfV----------------------------------KhFraH 52 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFV----------------------------------KHFRAH 52 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeeh----------------------------------hhhHHH
Confidence 77778777654 4579999999999999985431211111 123456
Q ss_pred CCcEEEEEEeCC--EEEEEeC-CCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEE-EecCCCcEEEeeCC
Q 016224 229 VGQVYAMAVGND--LLFAGTQ-DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLY-SGSMDNSIRVWNLE 301 (393)
Q Consensus 229 ~~~v~~l~~~~~--~l~~~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~-sg~~dg~i~iwd~~ 301 (393)
...|.+++.+-+ ++.+.+. |..++++|+..-... ....+..-...+..+.-.++ .++ +.-.++.+.++|-.
T Consensus 53 L~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi--nmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 53 LGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI--NMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred HHHHHhhhccccceeEeeccCcccceeEEEeeccchh--hhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc
Confidence 677777777776 6777676 999999998875321 01111112223322222232 333 33467899999986
Q ss_pred Ccc--eeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC-cc----eEEEEe--------ecCCccEEEEEee
Q 016224 302 TLQ--CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS-GN----LEVTYT--------HNEEHGVLALCGM 364 (393)
Q Consensus 302 ~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~-~~----~~~~~~--------~~~~~~v~~~~~~ 364 (393)
... ....-.-|..+|..+.+. ++.+++....|.|.-|..... +. +..-.. ........++.++
T Consensus 131 ~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs 210 (558)
T KOG0882|consen 131 GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS 210 (558)
T ss_pred CCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc
Confidence 533 344445699999999887 678888888999999987631 11 100000 1122346778888
Q ss_pred eCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224 365 PDSEGKPVLLCSCNDNSVRFYDLPSVII 392 (393)
Q Consensus 365 ~~~~~~~~l~s~s~dg~I~iwd~~s~~l 392 (393)
|++. .+.+-+.|..|+++++.+|++
T Consensus 211 p~g~---qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 211 PDGA---QISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred cccC---cccccCcccEEEEEEeccchh
Confidence 8876 788888999999999999875
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=8e-06 Score=79.62 Aligned_cols=198 Identities=12% Similarity=0.195 Sum_probs=125.1
Q ss_pred CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE-e--CCCEEEEE--cCC-eE
Q 016224 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-S--EGPWIFIG--VTN-FV 212 (393)
Q Consensus 139 ~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~--~~~-~i 212 (393)
.++..+++..|...-+|++|+-+.++|+.|+..|.|+++++.+|........+....... + ++..++++ ... ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 356677888999999999999999999999999999999999999888888776554433 2 56555543 333 67
Q ss_pred EEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEE
Q 016224 213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYS 288 (393)
Q Consensus 213 ~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s 288 (393)
.+|++..- ......-..-.++.|+.. .-+.|+......+||+.+............+....-....|++ ++++
T Consensus 1170 aLW~~~s~--~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1170 ALWDASST--GGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred HHhccccc--cCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 78987652 111112234457788776 4556666678899999987533221111111111123334443 3333
Q ss_pred ecCCCcEEEeeCCCcceeeEeccCccceEE-EEEcCCEEEEEeCCCcEEEEEcCCCcceEE
Q 016224 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMS-LLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348 (393)
Q Consensus 289 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 348 (393)
.|| .+||++..+.++.|......+.. +..+|..++.-+ .|||+++.+.+..
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence 344 46999988888877644322211 122245555544 3899887655443
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.94 E-value=0.0061 Score=62.31 Aligned_cols=224 Identities=8% Similarity=-0.013 Sum_probs=124.4
Q ss_pred cceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224 110 TDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (393)
Q Consensus 110 ~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (393)
..|..+.|..+ .++.+...|.|.+-|..+. .+.....-...|.+++|+||++.++..+.++++.+-.. +-..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 47888888744 6778999999999887765 22233335689999999999999999998888776543 2222222
Q ss_pred EecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee--------ee---cCCCCcEEEEEEeCC--EEEE-----EeCCC
Q 016224 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL--------SL---SGPVGQVYAMAVGND--LLFA-----GTQDG 249 (393)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~--------~~---~~~~~~v~~l~~~~~--~l~~-----~~~dg 249 (393)
.+.. ......++++-+|....-.-+....++.. +. ....+.=+.+.|-.| ++++ ...-.
T Consensus 146 ~~L~---~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLD---ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccc---cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 2110 11122344555554442222222222111 00 011222345777666 6666 22237
Q ss_pred cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEe---cCCCcEEEeeCCC---cceeeEeccCccceEEEEEc-
Q 016224 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSG---SMDNSIRVWNLET---LQCIQTLTEHTSVVMSLLCW- 322 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg---~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~- 322 (393)
.|++||-+ +.. ..............+..++|..+++- +.|+.|.+|.-+. ++..-.+......+..++|+
T Consensus 223 kirV~drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 223 KIRVYDRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eEEEeccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 89999977 211 11111111122223333456666653 3566898887542 22222233344458999998
Q ss_pred -CCEEEE---EeCCCcEEEEEcCC
Q 016224 323 -DQFLLS---CSLDKTIKVWFATD 342 (393)
Q Consensus 323 -~~~l~s---~s~dg~i~iwd~~~ 342 (393)
+..|++ ......|++|-+.+
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCceeeeecccccceEEEEEecC
Confidence 556665 44445599998754
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0013 Score=63.23 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=86.5
Q ss_pred ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (393)
Q Consensus 111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (393)
..+|+.-..+.+..|+.-|.+++|+-..++.......+-...+..+..+++..++|.|+..|.|.++-+..........
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~- 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY- 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee-
Confidence 6688888888899999999999999887755555555556667777789999999999999999999887643221110
Q ss_pred CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~ 258 (393)
++. .-..|...|++++|+++ .+++|...|+|..-.+..
T Consensus 116 --------------~t~----------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 --------------VTP----------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --------------ecc----------------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 000 01226778888888888 888888888888777665
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.90 E-value=0.011 Score=52.50 Aligned_cols=203 Identities=14% Similarity=0.165 Sum_probs=117.6
Q ss_pred eEEEEECCCCcEEEEEecCCcCCEE--EEEecCCCCEEEEEeC-----CCcEEEEECC-CCeEEEEEecCC---ceEEEE
Q 016224 130 FLHSWTVGDGFKLLTQLEGHQKVVS--GITLPSGSDKLYSGSK-----DETVRVWDCA-SGQCAGVINLGG---EVGCMI 198 (393)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~I~--~i~~s~~~~~l~s~s~-----dg~v~iwd~~-~~~~~~~~~~~~---~~~~~~ 198 (393)
.+.+||..++ +....+....+.-. .-.||+||++|++.=. .|.|-|||.. +.+.+.++.... .-..+.
T Consensus 29 ~~~v~D~~~g-~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 29 FALVFDCRTG-QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred EEEEEEcCCC-ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 4567888877 55555543222111 2469999999998743 5899999998 567777776442 234456
Q ss_pred eCCCEEEEEcCC-------------------eEEEEECCCCcee---ee--cCCCCcEEEEEEeCC-EEEEEeC-CCc--
Q 016224 199 SEGPWIFIGVTN-------------------FVKAWNTQTNTDL---SL--SGPVGQVYAMAVGND-LLFAGTQ-DGA-- 250 (393)
Q Consensus 199 ~~~~~l~~~~~~-------------------~i~v~d~~~~~~~---~~--~~~~~~v~~l~~~~~-~l~~~~~-dg~-- 250 (393)
++++.|+++..| .+...|..+++.+ .+ .-|.-.|..|++.++ .++.+.. .|.
T Consensus 108 pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 108 PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 777666664322 3555667777766 23 336677888888877 4444332 111
Q ss_pred -----EEEEEeccCCcccc-CceeecCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcceeeEeccCccceEEEEE
Q 016224 251 -----ILAWKFNVTTNCFE-PAASLKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321 (393)
Q Consensus 251 -----I~vwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 321 (393)
|.+++....-..+. +......-...+-+|+++ +..+ +|+=..+.+.+||..+++.+....- ..+..++.
T Consensus 188 ~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~ 265 (305)
T PF07433_consen 188 DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAP 265 (305)
T ss_pred ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceeeeee
Confidence 22232221100000 000112234566777775 4455 4455678999999999998877653 34566666
Q ss_pred cC-CEEEEEeCCCcEE
Q 016224 322 WD-QFLLSCSLDKTIK 336 (393)
Q Consensus 322 ~~-~~l~s~s~dg~i~ 336 (393)
.+ .++++.+ .|.+.
T Consensus 266 ~~~~f~~ssG-~G~~~ 280 (305)
T PF07433_consen 266 TDDGFLVSSG-QGQLI 280 (305)
T ss_pred cCCceEEeCC-CccEE
Confidence 63 3455444 44433
No 327
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.85 E-value=0.03 Score=54.86 Aligned_cols=234 Identities=14% Similarity=0.096 Sum_probs=133.2
Q ss_pred eEecCcEEEecCCCeEEEEECCCCcEEEEEecC--CcCCEEEEEecC--CCCEEEEEeC------CCcEEEEECCCCeEE
Q 016224 116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPS--GSDKLYSGSK------DETVRVWDCASGQCA 185 (393)
Q Consensus 116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~--h~~~I~~i~~s~--~~~~l~s~s~------dg~v~iwd~~~~~~~ 185 (393)
.+..+.+++++.|+.|.-.|..++ +.+-.... +... ..+.-+| .+..|+.+.. +|.|..+|.++|+.+
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TG-k~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTG-KVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCC-CEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 445667888999999999999999 66554432 1110 0111122 1234555542 689999999999988
Q ss_pred EEEecCCce-----------------------------------EEEEeCCCEEEEEc------C-----------CeEE
Q 016224 186 GVINLGGEV-----------------------------------GCMISEGPWIFIGV------T-----------NFVK 213 (393)
Q Consensus 186 ~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~------~-----------~~i~ 213 (393)
..+...... ..+.+...+++.+. . ..|.
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV 274 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence 776532110 01112344555542 1 1677
Q ss_pred EEECCCCcee-eecC--CCC-------c--EEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc----C---c-eeec
Q 016224 214 AWNTQTNTDL-SLSG--PVG-------Q--VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE----P---A-ASLK 270 (393)
Q Consensus 214 v~d~~~~~~~-~~~~--~~~-------~--v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~----~---~-~~~~ 270 (393)
-.|+++++.. .++. |.. . +..+..... .++.++.+|.++++|-++++..+. + . ..+.
T Consensus 275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~ 354 (527)
T TIGR03075 275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVD 354 (527)
T ss_pred EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccC
Confidence 7888888876 3322 211 1 112222333 788999999999999988754210 0 0 0000
Q ss_pred ------------------CceeeE-----------EEEEEcC--CEEEEecC----------------------------
Q 016224 271 ------------------GHSLAV-----------VSLVVGA--NKLYSGSM---------------------------- 291 (393)
Q Consensus 271 ------------------~~~~~v-----------~~l~~~~--~~l~sg~~---------------------------- 291 (393)
.....+ ...++++ .+++....
T Consensus 355 ~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p 434 (527)
T TIGR03075 355 LKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKP 434 (527)
T ss_pred CCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCC
Confidence 000000 0122222 12222211
Q ss_pred -----CCcEEEeeCCCcceeeEeccCccceEE-EEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224 292 -----DNSIRVWNLETLQCIQTLTEHTSVVMS-LLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351 (393)
Q Consensus 292 -----dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 351 (393)
-|.|.-+|+.+++.+...........+ +...+..++.++.||.++.+|.++++.+.....
T Consensus 435 ~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 435 PPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 256888999999887776533222222 334567888888899999999999988776654
No 328
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=0.00012 Score=70.21 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=108.1
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcc-----------ccCceeecCceeeEEEEEEcCC--EEEEecCCC
Q 016224 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC-----------FEPAASLKGHSLAVVSLVVGAN--KLYSGSMDN 293 (393)
Q Consensus 229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~-----------~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg 293 (393)
.....++.|+.+ +++.|+.||.+++..+.+.... ....+.+.+|...|.-+.|+.+ .|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456778999876 9999999999999988765432 1233567899999999999854 588888999
Q ss_pred cEEEeeCCCcceeeEecc--CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224 294 SIRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369 (393)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 369 (393)
.|.+|-+-.++-...+.. ..+.|.+++|. |..+...-.||.|.+=.+........ .-.......+.|++|..
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK---eLkg~~l~hv~ws~D~~- 169 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK---ELKGQLLAHVLWSEDLE- 169 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch---hcchheccceeecccHH-
Confidence 999999987766554432 45567888887 77777777777776655432211110 00111233577877765
Q ss_pred CcEEEEEeCCCeEEEEeCC
Q 016224 370 KPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 370 ~~~l~s~s~dg~I~iwd~~ 388 (393)
.++.+-..|.+++||.+
T Consensus 170 --~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 170 --QALFKKANGETHLYDNQ 186 (1189)
T ss_pred --HHHhhhcCCcEEEeccc
Confidence 67777778899998865
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.80 E-value=0.024 Score=50.97 Aligned_cols=228 Identities=15% Similarity=0.164 Sum_probs=131.3
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCC---cC----CEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEEEEEecCCceE
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGH---QK----VVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAGVINLGGEVG 195 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h---~~----~I~~i~~s~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~ 195 (393)
|...-.|.+||..+- ++..++.-. .. ....++++.|+++++..- -.-.|.|-|+..++.+.++..++-..
T Consensus 63 G~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~ 141 (342)
T PF06433_consen 63 GERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL 141 (342)
T ss_dssp EEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE
T ss_pred ccceeEEEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE
Confidence 555667999999886 665544321 11 123357788999887753 34689999999999999998887655
Q ss_pred EEEe-CCCEEEEEcCCeEEEEECC-CCcee-----eecCCCCcEE-EEEEeC--CEEEEEeCCCcEEEEEeccCCccccC
Q 016224 196 CMIS-EGPWIFIGVTNFVKAWNTQ-TNTDL-----SLSGPVGQVY-AMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEP 265 (393)
Q Consensus 196 ~~~~-~~~~l~~~~~~~i~v~d~~-~~~~~-----~~~~~~~~v~-~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~ 265 (393)
.... +..+...+.||.+....+. .++.. .+.....++. .-.+.. +.++--+.+|.|+-.|+......+..
T Consensus 142 iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~ 221 (342)
T PF06433_consen 142 IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK 221 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence 5443 3445556788877776666 33332 1112222222 222222 25666788999999888776432111
Q ss_pred ceeecC----------ceeeEEEEEEcCCEEEEec---CCC-------cEEEeeCCCcceeeEeccCccceEEEEEc--C
Q 016224 266 AASLKG----------HSLAVVSLVVGANKLYSGS---MDN-------SIRVWNLETLQCIQTLTEHTSVVMSLLCW--D 323 (393)
Q Consensus 266 ~~~~~~----------~~~~v~~l~~~~~~l~sg~---~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~ 323 (393)
...+.. -.-.+.++....++|++-- .++ .|-++|+.+++.+.++... .++.+|..+ .
T Consensus 222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDD 300 (342)
T ss_dssp EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSS
T ss_pred cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCC
Confidence 111100 0112233333344443321 111 5888899999999998742 356677777 2
Q ss_pred C-EEEE-EeCCCcEEEEEcCCCcceEEEEeecC
Q 016224 324 Q-FLLS-CSLDKTIKVWFATDSGNLEVTYTHNE 354 (393)
Q Consensus 324 ~-~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~ 354 (393)
+ +|++ ...++.|.+||..+++.+..+.....
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred CcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 2 5554 45689999999999887777665443
No 330
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.77 E-value=9.9e-05 Score=43.03 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=34.7
Q ss_pred EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178 (393)
Q Consensus 141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd 178 (393)
+.+..+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56677888999999999999999999999999999996
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.70 E-value=0.013 Score=54.86 Aligned_cols=184 Identities=16% Similarity=0.174 Sum_probs=100.3
Q ss_pred CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEEC
Q 016224 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNT 217 (393)
Q Consensus 138 ~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~ 217 (393)
+++.+...++...++|++++.| |=-++|.|..+|.+.|.|++....+..-....
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~------------------------- 127 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE------------------------- 127 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------------
T ss_pred cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------------
Confidence 3566777777789999999997 45599999999999999998877776543322
Q ss_pred CCCceeeecCCCCcEEEEEEe-----CC-----EEEEEeCCCcEEEEEecc-CCcccc--CceeecCceeeEEEEEE-c-
Q 016224 218 QTNTDLSLSGPVGQVYAMAVG-----ND-----LLFAGTQDGAILAWKFNV-TTNCFE--PAASLKGHSLAVVSLVV-G- 282 (393)
Q Consensus 218 ~~~~~~~~~~~~~~v~~l~~~-----~~-----~l~~~~~dg~I~vwd~~~-~~~~~~--~~~~~~~~~~~v~~l~~-~- 282 (393)
..........|+++.|. .| .+++|+..|.+.+|.+.- ....+. .......+...+..+.. +
T Consensus 128 ----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~ 203 (395)
T PF08596_consen 128 ----SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINA 203 (395)
T ss_dssp ------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEET
T ss_pred ----cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEEC
Confidence 00011223345555553 22 788888889999988753 221111 11111234445444432 1
Q ss_pred ------------------C---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE-------cCCEEEEEeCCCc
Q 016224 283 ------------------A---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-------WDQFLLSCSLDKT 334 (393)
Q Consensus 283 ------------------~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-------~~~~l~s~s~dg~ 334 (393)
+ +.++....+..++++..-+.+..+...........+.+ .+..|++-..+|.
T Consensus 204 ~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 204 DTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp TT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCc
Confidence 0 12444455788999999887776555433222223333 2457888899999
Q ss_pred EEEEEcCCCcceEEEEe
Q 016224 335 IKVWFATDSGNLEVTYT 351 (393)
Q Consensus 335 i~iwd~~~~~~~~~~~~ 351 (393)
|++|.+...+.+....-
T Consensus 284 i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEEEETTT--EEEEEE-
T ss_pred EEEEECCCchHhhcccC
Confidence 99999988776655544
No 332
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.0057 Score=45.39 Aligned_cols=93 Identities=23% Similarity=0.265 Sum_probs=64.4
Q ss_pred CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEE
Q 016224 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC 362 (393)
Q Consensus 284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 362 (393)
+.|++|+.|..|++|+-. +.+.++... ..|+++... +..++.+..+|+|-+|+-. ..+.... ....++++.
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiK---SK~~~~~~~ 87 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIK---SKNQVTSMA 87 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeec---cCCCeEEEE
Confidence 479999999999999854 567777644 455666554 7889999999999999752 2222222 222355554
Q ss_pred ee-eCCCCCcEEEEEeCCCeEEE
Q 016224 363 GM-PDSEGKPVLLCSCNDNSVRF 384 (393)
Q Consensus 363 ~~-~~~~~~~~l~s~s~dg~I~i 384 (393)
+. .+..+.+-|++|-.+|.|-+
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEcCCCCCceEEEEEecCCeEEe
Confidence 44 34445567999999998753
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.63 E-value=0.027 Score=53.51 Aligned_cols=223 Identities=12% Similarity=0.092 Sum_probs=110.5
Q ss_pred EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEE-ECCCCcee
Q 016224 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAW-NTQTNTDL 223 (393)
Q Consensus 145 ~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~-d~~~~~~~ 223 (393)
.+....-....|.++|++++++.+ .||.-.|+.....+... .....-..+.+.+++.+....+.|.++ +.......
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--cCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence 333345567889999999999884 46777888744444332 223333445556666666677788886 33222211
Q ss_pred eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCC
Q 016224 224 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE 301 (393)
Q Consensus 224 ~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~ 301 (393)
.+ .....+..|-. +.+|+..+.+ .|.+||+.+. +.+..+... .|..+.|+ +++++..+. ..+.|++..
T Consensus 104 ~i-~~~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~----~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~~ 173 (443)
T PF04053_consen 104 SI-KLPFSVEKIFG-GNLLGVKSSD-FICFYDWETG----KLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKYN 173 (443)
T ss_dssp -----SS-EEEEE--SSSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred EE-cCCcccceEEc-CcEEEEECCC-CEEEEEhhHc----ceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEec
Confidence 11 11223344433 4455555444 8999999987 555665533 37888887 457777764 467777654
Q ss_pred Cc-----------ceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224 302 TL-----------QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370 (393)
Q Consensus 302 ~~-----------~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 370 (393)
.. ..+..+..-...|.+..|.++.++-.... .|+.+ . ++....+...... ..-+.+.+...
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl--~-~Ge~~~i~~ld~~--~yllgy~~~~~-- 245 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYL--V-NGETGIIAHLDKP--LYLLGYLPKEN-- 245 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEE--E-TTEEEEEEE-SS----EEEEEETTTT--
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEE--E-cCCcceEEEcCCc--eEEEEEEccCC--
Confidence 22 02333332256788888887765555555 77763 2 2333344433333 44444444322
Q ss_pred cEEEEEeCCCeEEEEeCCc
Q 016224 371 PVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 371 ~~l~s~s~dg~I~iwd~~s 389 (393)
.++....|+.|..+.++.
T Consensus 246 -~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 246 -RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEEE-TT--EEEEE--H
T ss_pred -EEEEEECCCCEEEEEECH
Confidence 788888999998887753
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.62 E-value=0.0015 Score=61.81 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=44.7
Q ss_pred eecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224 108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 108 ~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~ 182 (393)
....+.|++++++ .++.|+.||.|.+||...+.. .+..+.-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 3446666666644 456677777777777655411 12223445666777777777777777777777776543
No 335
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.018 Score=54.16 Aligned_cols=225 Identities=10% Similarity=0.105 Sum_probs=138.8
Q ss_pred EeeEecCcEEEe-cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-----CCcEEEEECCCCeEEEE
Q 016224 114 CRNWVQGNCMYG-EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCASGQCAGV 187 (393)
Q Consensus 114 c~~~~~~~~~~g-~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~ 187 (393)
-..||.+..+++ -....|.||+..+ +.++..-.-.-..|....|+|.+++||-=.. -..+.|-.+.+++.+++
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 357887755443 3346899998766 3444333334578899999999988885432 24677777777777776
Q ss_pred EecCCceEE---EEeCCCEEEEEcC--------C---eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEE--E-eC
Q 016224 188 INLGGEVGC---MISEGPWIFIGVT--------N---FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA--G-TQ 247 (393)
Q Consensus 188 ~~~~~~~~~---~~~~~~~l~~~~~--------~---~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~--~-~~ 247 (393)
.....-..| +-.+|.+|++-.+ + .+.|+.++..... ........|...+|.|. .+++ | ..
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 655443333 2357788776322 1 3455666555433 34455678888999886 3333 2 23
Q ss_pred CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe---cCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG---SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~ 322 (393)
..++.+|-+++....++++..+... ....+.|+ |.+++.+ +..|.+..+|+.-..+..+-.......+.+.|+
T Consensus 469 k~tvsfY~~e~~~~~~~lVk~~dk~--~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWD 546 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVKELDKK--FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWD 546 (698)
T ss_pred ccceeEEEeecCCCchhhhhhhccc--ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceEC
Confidence 4678999988655555666666543 33444554 6665543 457899999987433333322233345677787
Q ss_pred --CCEEEEEeC------CCcEEEEEcC
Q 016224 323 --DQFLLSCSL------DKTIKVWFAT 341 (393)
Q Consensus 323 --~~~l~s~s~------dg~i~iwd~~ 341 (393)
|+|+++++. |.--+||+..
T Consensus 547 PtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 547 PTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CCCCEEEEeeehhhhccccceEEEEee
Confidence 789999886 3445566653
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.013 Score=57.97 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=82.9
Q ss_pred EEEEEeCCCc-----EEEEEeccCCccc--cCc--eeecC-----ceeeEEEEEEc--CCEEEEecCCCcEEEeeCC---
Q 016224 241 LLFAGTQDGA-----ILAWKFNVTTNCF--EPA--ASLKG-----HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE--- 301 (393)
Q Consensus 241 ~l~~~~~dg~-----I~vwd~~~~~~~~--~~~--~~~~~-----~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~--- 301 (393)
+|++.+.|+. |++|+++...... ... ..+.. ...++.+++.+ -..+|+|-.+|.|..+.-.
T Consensus 79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 6666555543 8889887653211 111 11111 23445556555 4579999999999998532
Q ss_pred -CcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224 302 -TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN 378 (393)
Q Consensus 302 -~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~ 378 (393)
.+....-......+|+.+.+. +..++-+..-..|.+|.+. ++.+....-........+..+.+... .+++++.
T Consensus 159 Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~---qfIca~~ 234 (933)
T KOG2114|consen 159 DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTY---QFICAGS 234 (933)
T ss_pred ccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCc---cEEEecC
Confidence 122222223456789999887 4442333345579999987 33322221223333455555544332 3555543
Q ss_pred CCeEEEEeCCceeeC
Q 016224 379 DNSVRFYDLPSVIIC 393 (393)
Q Consensus 379 dg~I~iwd~~s~~lc 393 (393)
..|.+|+.+....|
T Consensus 235 -e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 235 -EFLYFYDSDGRGPC 248 (933)
T ss_pred -ceEEEEcCCCccee
Confidence 46899998876655
No 337
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.59 E-value=0.014 Score=50.54 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=20.5
Q ss_pred EeeEecCcE--EEecCCCeEEEEECCCC
Q 016224 114 CRNWVQGNC--MYGEKCKFLHSWTVGDG 139 (393)
Q Consensus 114 c~~~~~~~~--~~g~~dg~i~vwd~~~~ 139 (393)
-++|++|.. +.+...|+|+++|+...
T Consensus 48 kl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 48 KLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred EEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 368998854 35889999999998753
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.58 E-value=0.034 Score=52.88 Aligned_cols=216 Identities=11% Similarity=0.008 Sum_probs=108.3
Q ss_pred ceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224 111 DILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189 (393)
Q Consensus 111 ~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 189 (393)
....+.++|+ ..++...+|.-.|+..... +.... +.-...+|.+. +.+|+-....+|+|+.--+.+....++
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~-r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAW-RNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTT-EEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT----
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCC-ccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEc
Confidence 3456677766 4556688888888885443 33222 23345678874 457777778899997543444444666
Q ss_pred cCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC------Cc
Q 016224 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT------TN 261 (393)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~------~~ 261 (393)
.+..+..++. |.+|.+..++.|.+||..+++.+...... .|..+.|+++ +++..+ +..+.+++.+.. ..
T Consensus 107 ~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t-~~~i~il~~~~~~~~~~~~~ 183 (443)
T PF04053_consen 107 LPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVT-KDSIYILKYNLEAVAAIPEE 183 (443)
T ss_dssp -SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHHBTTT
T ss_pred CCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEe-CCeEEEEEecchhccccccc
Confidence 6655666666 88888888889999999999888544443 3899999988 666655 457778776543 00
Q ss_pred ccc-CceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEE
Q 016224 262 CFE-PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVW 338 (393)
Q Consensus 262 ~~~-~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iw 338 (393)
..+ .......-...|.+..|.++.|+-.+.. .|+. +-.|+. .++..-..++.-+.+.+ +.+.....|+.|..+
T Consensus 184 g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 184 GVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp B-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred CchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence 001 1222222245677788887754444444 5555 222321 12221123444444444 666666677776666
Q ss_pred Ec
Q 016224 339 FA 340 (393)
Q Consensus 339 d~ 340 (393)
.+
T Consensus 260 ~l 261 (443)
T PF04053_consen 260 EL 261 (443)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 339
>PHA02713 hypothetical protein; Provisional
Probab=97.57 E-value=0.007 Score=59.70 Aligned_cols=209 Identities=10% Similarity=0.122 Sum_probs=108.1
Q ss_pred cEEEEECCCCeEEEEEecCCc---eEEEEeCCCEEEEEc-C------CeEEEEECCCCceeeecC---CCCcEEEEEEeC
Q 016224 173 TVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIGV-T------NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGN 239 (393)
Q Consensus 173 ~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~------~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~ 239 (393)
.+..||..+++-...-..+.. ......++.+.++|. + ..+..||+.++.-..... .........+..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 567788777653332222221 122334566666553 2 357789988876442221 222233334444
Q ss_pred CEEEEEeCCC-----cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---------------------
Q 016224 240 DLLFAGTQDG-----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN--------------------- 293 (393)
Q Consensus 240 ~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg--------------------- 293 (393)
.+.+.|+.++ .+..||..+.. +.....+.........+..++...+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 4777777654 37788877542 2322222222222233455667777777542
Q ss_pred --cEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCC------CcEEEEEcCCCcceEEEEeecC---CccEEE
Q 016224 294 --SIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLD------KTIKVWFATDSGNLEVTYTHNE---EHGVLA 360 (393)
Q Consensus 294 --~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~---~~~v~~ 360 (393)
.+..||.++.+- +..+.........+...++..+.|+.+ ..+..||..+............ ...+..
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred cceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 477788876432 222222222223344456666667654 2467898876222332222211 122222
Q ss_pred EEeeeCCCCCcEEEEEeCCC--eEEEEeCCce
Q 016224 361 LCGMPDSEGKPVLLCSCNDN--SVRFYDLPSV 390 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~dg--~I~iwd~~s~ 390 (393)
+ ++++.++|+.|+ .+..||+.+.
T Consensus 511 ~-------~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 511 H-------DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred E-------CCEEEEEeeecceeehhhcCcccc
Confidence 2 445888998888 7788887764
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0019 Score=62.14 Aligned_cols=156 Identities=20% Similarity=0.290 Sum_probs=91.3
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCce---eecCceeeEEEEEEcC--CEEEEecCCCcEEEeeC
Q 016224 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA---SLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNL 300 (393)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~---~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~ 300 (393)
..+.+..+.++++ ++|+|+..|.|.++-++..... .... .-+.|...|++++|+. ..+++|...|+|.+-.+
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~-~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR-DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC-cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 4455556666665 8888999999999988774321 1111 1223788999999974 47999999999999888
Q ss_pred CCc----ceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeec-CCccEEEEEeeeCCC--CCcEE
Q 016224 301 ETL----QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHN-EEHGVLALCGMPDSE--GKPVL 373 (393)
Q Consensus 301 ~~~----~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~~l 373 (393)
.+. -..+.+..-.+.|..+.....+|+.++.-..+ +++.+.. .+..+-... ....-...+|.|... ....|
T Consensus 154 ~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~-Lc~tE~e-ti~QIG~k~R~~~~~~GACF~~g~~~~q~~~I 231 (726)
T KOG3621|consen 154 DSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCI-LCQTEAE-TITQIGKKPRKSLIDFGACFFPGQCKAQKPQI 231 (726)
T ss_pred chhhhhccccceeeccCcceEEeecccceehHhhhhhhh-eeecchh-HHHHhcCCCcCCccccceEEeeccccCCCceE
Confidence 762 11233334456778887777776666554443 3344322 122221111 111234556666422 22345
Q ss_pred EEEeCCCeEEEEeCC
Q 016224 374 LCSCNDNSVRFYDLP 388 (393)
Q Consensus 374 ~s~s~dg~I~iwd~~ 388 (393)
+++ .=| .|+|.+.
T Consensus 232 yca-RPG-~RlWead 244 (726)
T KOG3621|consen 232 YCA-RPG-LRLWEAD 244 (726)
T ss_pred EEe-cCC-CceEEee
Confidence 554 333 5777753
No 341
>PHA02713 hypothetical protein; Provisional
Probab=97.50 E-value=0.014 Score=57.67 Aligned_cols=211 Identities=7% Similarity=0.091 Sum_probs=112.4
Q ss_pred eEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEEEEEecC---CceEEEEe
Q 016224 130 FLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLG---GEVGCMIS 199 (393)
Q Consensus 130 ~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~---~~~~~~~~ 199 (393)
.+..||..+. +..+..+...... .+++. -++...+.|+.+ ..+..||..+.+-...-... ........
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 5677887765 1222222211111 12222 256667777753 34778888776532222221 12233345
Q ss_pred CCCEEEEE-cC-----CeEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCCC---------------------
Q 016224 200 EGPWIFIG-VT-----NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQDG--------------------- 249 (393)
Q Consensus 200 ~~~~l~~~-~~-----~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~dg--------------------- 249 (393)
++++.+.| .+ ..+..||..+++-..... .......+.+...+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 66666665 32 258899998876543222 1222223344444666676543
Q ss_pred --cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC------CcEEEeeCCC---cceeeEeccCccceEE
Q 016224 250 --AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD------NSIRVWNLET---LQCIQTLTEHTSVVMS 318 (393)
Q Consensus 250 --~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d------g~i~iwd~~~---~~~~~~~~~~~~~v~~ 318 (393)
.+..||..+.. +..+..+............++...+.|+.+ ..+..||.++ .+.+..+.........
T Consensus 431 ~~~ve~YDP~td~--W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 431 SNKVIRYDTVNNI--WETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cceEEEECCCCCe--EeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 46667766542 233333222222223345566666667654 2467899886 3344555544445555
Q ss_pred EEEcCCEEEEEeCCC--cEEEEEcCCCc
Q 016224 319 LLCWDQFLLSCSLDK--TIKVWFATDSG 344 (393)
Q Consensus 319 l~~~~~~l~s~s~dg--~i~iwd~~~~~ 344 (393)
+...+...++|+.|+ .+..||+.+.+
T Consensus 509 ~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 509 ILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEECCEEEEEeeecceeehhhcCccccc
Confidence 666688888999888 67777776543
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.48 E-value=0.02 Score=58.79 Aligned_cols=231 Identities=12% Similarity=0.068 Sum_probs=117.8
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc--eEEEEeCCCEEEEEcC-CeEEEEECCCCcee---
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE--VGCMISEGPWIFIGVT-NFVKAWNTQTNTDL--- 223 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~-~~i~v~d~~~~~~~--- 223 (393)
...|.++.|..+.+.++.+..+|.|.+-|.++......-..... ..++.++.++++.... .++.+ ....-..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~-mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLF-MTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE-Eeccccchhcc
Confidence 36899999999999999999999999999888754443333333 3445567777766544 33333 22222211
Q ss_pred ee---cCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEE-----ecCC
Q 016224 224 SL---SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYS-----GSMD 292 (393)
Q Consensus 224 ~~---~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~s-----g~~d 292 (393)
.+ ....+....+-|... .-+-| ..|.....+....... ........|. ++++| +|.++++ ....
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrg-s~gr~~~~~~~~~ek~-~~~~~~~~~~---~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRG-SEGRQAARQKIEKEKA-LEQIEQDDHK---TSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccceecccccceeeec-chhhhccccccccccc-ccchhhccCC---ceEEEccCCcEEEEEEEeccCCc
Confidence 11 001111122222221 11111 1111111111100000 0000111222 34566 5667777 2233
Q ss_pred CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe---CCCcEEEEEcCCCcceEEE-EeecCCccEEEEEeeeC
Q 016224 293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS---LDKTIKVWFATDSGNLEVT-YTHNEEHGVLALCGMPD 366 (393)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s---~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 366 (393)
..|++||.+ +.+-.+-......-.+++|- |..+++-. .|+.|.+|.-.....-... ........+..++|..+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 899999977 44433222223333556665 56666543 4667888865322211111 11222233889999888
Q ss_pred CCCCcEEEE---EeCCCeEEEEeCCce
Q 016224 367 SEGKPVLLC---SCNDNSVRFYDLPSV 390 (393)
Q Consensus 367 ~~~~~~l~s---~s~dg~I~iwd~~s~ 390 (393)
++ +|++ ......|++|-+.+.
T Consensus 301 sd---iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SD---ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CC---ceeeeecccccceEEEEEecCe
Confidence 77 7776 455556999988764
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.37 E-value=0.016 Score=43.10 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=65.7
Q ss_pred EEEEEecC---C-CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeec
Q 016224 153 VSGITLPS---G-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLS 226 (393)
Q Consensus 153 I~~i~~s~---~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~ 226 (393)
|++|++.. + .+.|+.|+.|..|++|+- .+.+.++.....+..+.. .+++.++-.+|+|-+|+-.... ....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl-WRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL-WRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCccee-eeec
Confidence 66777643 2 268999999999999994 477888888877777664 5555556688899999764332 2332
Q ss_pred CCCCcEEEEEEeC---C---EEEEEeCCCcEE
Q 016224 227 GPVGQVYAMAVGN---D---LLFAGTQDGAIL 252 (393)
Q Consensus 227 ~~~~~v~~l~~~~---~---~l~~~~~dg~I~ 252 (393)
. ...+.++.+.. + .|++|-.+|.|-
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 22356655432 2 789998888874
No 344
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.35 E-value=0.1 Score=46.52 Aligned_cols=169 Identities=11% Similarity=0.156 Sum_probs=103.8
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe------------------CCCcEEEEECCCCeEEE
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------------------KDETVRVWDCASGQCAG 186 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s------------------~dg~v~iwd~~~~~~~~ 186 (393)
....|.|-|||+..+++.+.++..|.-.-..|.+.||++.|+.+- .+..+.+-|..+|+.+.
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 456789999999977899999999988888899999998887762 23455666777787777
Q ss_pred EEecCCc-----eE--EEEeCCCEEEEE-cCC-------eEEEEECCCCce-ee-----ecCCCCcEEEEEEeCC---EE
Q 016224 187 VINLGGE-----VG--CMISEGPWIFIG-VTN-------FVKAWNTQTNTD-LS-----LSGPVGQVYAMAVGND---LL 242 (393)
Q Consensus 187 ~~~~~~~-----~~--~~~~~~~~l~~~-~~~-------~i~v~d~~~~~~-~~-----~~~~~~~v~~l~~~~~---~l 242 (393)
....+.. +. .+..++..++.. ..+ .|-+++....-. +. .......+-+|+++.+ ..
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 7655321 21 122355555443 111 233333332111 11 1234467889999887 45
Q ss_pred EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEee
Q 016224 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWN 299 (393)
Q Consensus 243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd 299 (393)
+++-..+.+.+||..++. .+... .-..++.++..++-|+..+..|.+...+
T Consensus 233 ~tsPrGg~~~~~d~~tg~----~~~~~--~l~D~cGva~~~~~f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGR----LLGSV--PLPDACGVAPTDDGFLVSSGQGQLIRLS 283 (305)
T ss_pred EECCCCCEEEEEECCCCC----Eeecc--ccCceeeeeecCCceEEeCCCccEEEcc
Confidence 666678899999988873 22222 2234566666544344444455544444
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.34 E-value=0.0049 Score=58.41 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=59.8
Q ss_pred CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecC
Q 016224 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (393)
Q Consensus 148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~ 227 (393)
...+.|.+++++|+.+.|+.|+.||+|.+||...+..... .
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---------------------------------------k 297 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---------------------------------------K 297 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---------------------------------------e
Confidence 4778999999999999999999999999999876532211 1
Q ss_pred CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224 228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~ 260 (393)
..-.++.++|+|+ ++++|+..|.+.+||+.-..
T Consensus 298 a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 298 AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 2234678899988 89999999999999987653
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0034 Score=61.74 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=59.8
Q ss_pred ceEEeeEecCcEE--EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224 111 DILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS 181 (393)
Q Consensus 111 ~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~ 181 (393)
.++.++|.+..++ .|-.-|.+.+|...+. +.......|+.+|..+.||++|..|+|+..-|.|.+|.+..
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 3456999999766 4778889999998876 56666677999999999999999999999999999999864
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.26 E-value=0.0001 Score=69.77 Aligned_cols=187 Identities=16% Similarity=0.262 Sum_probs=117.5
Q ss_pred ceEEeeEecC--cE--EEecCCCeEEEEECCCCcEE-EEEecCCcCCEEEEEecC-CCCEEEEEe----CCCcEEEEECC
Q 016224 111 DILCRNWVQG--NC--MYGEKCKFLHSWTVGDGFKL-LTQLEGHQKVVSGITLPS-GSDKLYSGS----KDETVRVWDCA 180 (393)
Q Consensus 111 ~i~c~~~~~~--~~--~~g~~dg~i~vwd~~~~~~~-~~~l~~h~~~I~~i~~s~-~~~~l~s~s----~dg~v~iwd~~ 180 (393)
-+.|+++..+ .+ .+|..+|.|-+-.+.....- .....+|....++++|++ |.+.||.|- .|-.+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 5677777643 22 36889999999887644222 334567889999999987 667777762 36789999998
Q ss_pred CC--eEEEE--Eec----CCceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeC---CEEEEEeCC
Q 016224 181 SG--QCAGV--INL----GGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---DLLFAGTQD 248 (393)
Q Consensus 181 ~~--~~~~~--~~~----~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~d 248 (393)
++ ..... +.. .....|...+.+++.+| ....+.++|++........-....+..+.++| +++++-. |
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-d 216 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-D 216 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-c
Confidence 76 22111 111 12244555677778887 55599999998654433333344555566555 4666654 9
Q ss_pred CcEEEEEe-ccCCccccCceeecC----ceeeEEEEEEcCC---EEEEecC-CCcEEEeeCC
Q 016224 249 GAILAWKF-NVTTNCFEPAASLKG----HSLAVVSLVVGAN---KLYSGSM-DNSIRVWNLE 301 (393)
Q Consensus 249 g~I~vwd~-~~~~~~~~~~~~~~~----~~~~v~~l~~~~~---~l~sg~~-dg~i~iwd~~ 301 (393)
|.|.+||. +.-. .++..+.. ....+..++|.+. .+++... .++|+++|+.
T Consensus 217 g~iAiwD~~rnie---npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 GDIAIWDTYRNIE---NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceeeccchhhhc---cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999993 3322 22222221 1224788888753 4555554 5789999985
No 348
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.00065 Score=56.63 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=81.9
Q ss_pred EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEE
Q 016224 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSL 319 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l 319 (393)
.|..-+.||.|.-++++..... .... .-+... ..+.--+..+++|+.+|.|.+|.... +.....+..-...|.+.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s--~rse-~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKES--CRSE-RFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhh--hhhh-hhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 4555577888888877654321 1111 111111 22222356799999999999999862 22222222223334444
Q ss_pred EEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE--eCCCeEEEEeCCce
Q 016224 320 LCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS--CNDNSVRFYDLPSV 390 (393)
Q Consensus 320 ~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~--s~dg~I~iwd~~s~ 390 (393)
... +.+..+++.||.|+.|++.-.+.+.....|.... ...+..+. ...+|..+ |.|..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~-~e~~ivv~---sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES-GEELIVVG---SDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCC-cceeEEec---CCceEEeeccccchhhhhcchhhh
Confidence 333 3488899999999999998777666666555322 22222221 22266666 77888888887653
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.16 E-value=0.00014 Score=68.80 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=95.0
Q ss_pred ecCCCCcEEEEEEeCC---EEEEEe----CCCcEEEEEeccCCccccCceeec-CceeeEEEEEEc--CCEEEEecCCCc
Q 016224 225 LSGPVGQVYAMAVGND---LLFAGT----QDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNS 294 (393)
Q Consensus 225 ~~~~~~~v~~l~~~~~---~l~~~~----~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~ 294 (393)
..++..+.++++|++- .||+|- .|..+.|||+.+.-........+. +......+++|. ..++++|.....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence 4566778889999774 666663 356799999987621101111111 122223355664 457888888889
Q ss_pred EEEeeCCC-cceeeEeccCccceEEEEE---cCCEEEEEeCCCcEEEEE-cCCCcceEEEEe---ecCCccEEEEEeeeC
Q 016224 295 IRVWNLET-LQCIQTLTEHTSVVMSLLC---WDQFLLSCSLDKTIKVWF-ATDSGNLEVTYT---HNEEHGVLALCGMPD 366 (393)
Q Consensus 295 i~iwd~~~-~~~~~~~~~~~~~v~~l~~---~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~---~~~~~~v~~~~~~~~ 366 (393)
+.++|++. ......+ .+..+..+.. .++|+++-. ||.|.+|| .++-+....... ......+..++|.|.
T Consensus 178 ~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred hhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 99999983 2222222 2223333333 367877766 99999999 443333222111 122235899999998
Q ss_pred CCCCcEEEEEeC-CCeEEEEeCC
Q 016224 367 SEGKPVLLCSCN-DNSVRFYDLP 388 (393)
Q Consensus 367 ~~~~~~l~s~s~-dg~I~iwd~~ 388 (393)
..+ .+++... .++|+++++.
T Consensus 255 rtg--lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 255 RTG--LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Ccc--hhhhhccCcceEEEeccc
Confidence 754 4555544 5789999875
No 350
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.12 E-value=0.088 Score=52.07 Aligned_cols=219 Identities=16% Similarity=0.222 Sum_probs=123.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEEecCC---ceEEEEeCCCEEEEE-cC------CeEEEEECCCCceee
Q 016224 161 GSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIG-VT------NFVKAWNTQTNTDLS 224 (393)
Q Consensus 161 ~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-~~------~~i~v~d~~~~~~~~ 224 (393)
.+.+++.|+.+ ..+..+|..+++-......+. ......-++.+.++| .+ ..+..||..+++-..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 34566667666 367888888775444333332 223334455555554 55 268889998887543
Q ss_pred ---ecCCCCcEEEEEEeCCEEEEEeCCCc-----EEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---
Q 016224 225 ---LSGPVGQVYAMAVGNDLLFAGTQDGA-----ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN--- 293 (393)
Q Consensus 225 ---~~~~~~~v~~l~~~~~~l~~~~~dg~-----I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg--- 293 (393)
+...............+.++|+.||. |-.||..+.. +.............-...+++...++|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 23333333344445558899999875 6667766543 3444444434444455566788888888554
Q ss_pred ---cEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCCCc-----EEEEEcCCCcceEEEEee---cCCccEEE
Q 016224 294 ---SIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLDKT-----IKVWFATDSGNLEVTYTH---NEEHGVLA 360 (393)
Q Consensus 294 ---~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~---~~~~~v~~ 360 (393)
++..||..+.+- +..+..-..........+...+.|+.|+. |..||..+.+-. .+... .....+..
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT-MVAPMTSPRSAVGVVV 520 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee-EcccCccccccccEEE
Confidence 567888876543 33333222233344445677778887763 677887654322 22211 11222222
Q ss_pred EEeeeCCCCCcEEEEEeCCCe-----EEEEeCCc
Q 016224 361 LCGMPDSEGKPVLLCSCNDNS-----VRFYDLPS 389 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~dg~-----I~iwd~~s 389 (393)
+ ++.+.+.|+.||. |..||..+
T Consensus 521 ~-------~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 521 L-------GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred E-------CCEEEEEecccCccccceeEEcCCCC
Confidence 2 3447778877754 55565544
No 351
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.09 E-value=0.041 Score=53.64 Aligned_cols=173 Identities=12% Similarity=0.100 Sum_probs=105.0
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEEEEEecCCceEEEEeC
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVINLGGEVGCMISE 200 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 200 (393)
.-..+.+.+.|.++. +...++.--. ...-++++++++++++.+.+ .++..-+..+...+..+.... +..+..+
T Consensus 211 ~ey~~~vSvID~etm-eV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkd 287 (635)
T PRK02888 211 KKYRSLFTAVDAETM-EVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKA 287 (635)
T ss_pred cceeEEEEEEECccc-eEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhC
Confidence 334556777787765 5555554322 34567889999999888632 234444433333222222221 1123346
Q ss_pred CCEEEEEcCCeEEEEECCC-----CceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccc----cC---
Q 016224 201 GPWIFIGVTNFVKAWNTQT-----NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCF----EP--- 265 (393)
Q Consensus 201 ~~~l~~~~~~~i~v~d~~~-----~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~----~~--- 265 (393)
+++..+ .++.|.+.|..+ .+......-......+.++|| .++++..+.+|.|.|+......+ ++
T Consensus 288 GK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 288 GKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 776666 467899999998 345555666777889999998 56666679999999998754211 01
Q ss_pred -ceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224 266 -AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET 302 (393)
Q Consensus 266 -~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~ 302 (393)
..+..- ...-...+|+ ++...+-..|..|..||+.+
T Consensus 367 vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 111111 1111233455 45677777899999999876
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.0012 Score=55.17 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=67.8
Q ss_pred CCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCc-c
Q 016224 239 NDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT-S 314 (393)
Q Consensus 239 ~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~ 314 (393)
...+++|+.+|.|.+|............ ..-...|.++-+. +.+..++..||.|+.|++.-.+.+.....|. .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh---hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 3489999999999999887432111111 1112233333332 4488999999999999999888877777777 4
Q ss_pred ceEEEEEc--CCEEEEE--eCCCcEEEEEcCCC
Q 016224 315 VVMSLLCW--DQFLLSC--SLDKTIKVWFATDS 343 (393)
Q Consensus 315 ~v~~l~~~--~~~l~s~--s~dg~i~iwd~~~~ 343 (393)
++..+... +.+++.+ |.|..++.|++...
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 55444443 5677777 77888888887543
No 353
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.08 E-value=0.091 Score=51.94 Aligned_cols=210 Identities=15% Similarity=0.236 Sum_probs=120.5
Q ss_pred CeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEEEEEecCC---ceEEEE
Q 016224 129 KFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMI 198 (393)
Q Consensus 129 g~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~---~~~~~~ 198 (393)
..+..+|..++ +..+..+. +...-.++++. ++...++|+.| .++..||..+.+=...-.... ......
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 46888888776 34444444 23334445544 44677888888 367788887776332222221 223334
Q ss_pred eCCCEEEEE-cCC-----eEEEEECCCCceeeec---CCCCcEEEEEEeCCEEEEEeCCC------cEEEEEeccCCccc
Q 016224 199 SEGPWIFIG-VTN-----FVKAWNTQTNTDLSLS---GPVGQVYAMAVGNDLLFAGTQDG------AILAWKFNVTTNCF 263 (393)
Q Consensus 199 ~~~~~l~~~-~~~-----~i~v~d~~~~~~~~~~---~~~~~v~~l~~~~~~l~~~~~dg------~I~vwd~~~~~~~~ 263 (393)
-++.+.++| .++ ++..||..+.+-.... ......-...+...+.++|+.++ ++..||..+.. +
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--W 456 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--e
Confidence 466666665 444 6888999888754222 22333344445555777777554 45677776653 3
Q ss_pred cCceeecCceeeEEEEEEcCCEEEEecCCC-----cEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCCCc--
Q 016224 264 EPAASLKGHSLAVVSLVVGANKLYSGSMDN-----SIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLDKT-- 334 (393)
Q Consensus 264 ~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg-----~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~dg~-- 334 (393)
..+..+..-.........++.+.+.|+.|+ +|..||.++.+- +..+......+......+...++|+.|+.
T Consensus 457 ~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 457 TLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNN 536 (571)
T ss_pred eecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccc
Confidence 333333333333334456677788888776 377788876543 33333344444455556778888887764
Q ss_pred ---EEEEEcCC
Q 016224 335 ---IKVWFATD 342 (393)
Q Consensus 335 ---i~iwd~~~ 342 (393)
|..||..+
T Consensus 537 l~~ve~ydp~~ 547 (571)
T KOG4441|consen 537 LNTVECYDPET 547 (571)
T ss_pred cceeEEcCCCC
Confidence 55565543
No 354
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.08 E-value=0.3 Score=49.86 Aligned_cols=223 Identities=11% Similarity=0.086 Sum_probs=116.7
Q ss_pred ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC--------EEEEEec----------------CCCCEEEEEeCCCc
Q 016224 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--------VSGITLP----------------SGSDKLYSGSKDET 173 (393)
Q Consensus 118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~--------I~~i~~s----------------~~~~~l~s~s~dg~ 173 (393)
..+.+++++.++.|.-.|..++ +.+-++...... ...+++. ..+.+|+.++.|+.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TG-k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATG-KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 3566778888999999999999 666665432211 1123331 13458888999999
Q ss_pred EEEEECCCCeEEEEEecCCceE------------------EEEeCCCEEEEEc----------CCeEEEEECCCCcee-e
Q 016224 174 VRVWDCASGQCAGVINLGGEVG------------------CMISEGPWIFIGV----------TNFVKAWNTQTNTDL-S 224 (393)
Q Consensus 174 v~iwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~----------~~~i~v~d~~~~~~~-~ 224 (393)
|.-.|.++|+....+.....+. -+..++.+++.+. ++.|+-+|.++++.+ .
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999999999887765433221 1122444444322 468999999999887 3
Q ss_pred ecCCCCcEEEEEEeCCEEEEEeCCC-cEEEEEeccCCccccCceeecCceeeEEEEEEcCCE-EEEecCCCcEEEeeCCC
Q 016224 225 LSGPVGQVYAMAVGNDLLFAGTQDG-AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK-LYSGSMDNSIRVWNLET 302 (393)
Q Consensus 225 ~~~~~~~v~~l~~~~~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~sg~~dg~i~iwd~~~ 302 (393)
...-...........+....++.+. ....+|.+.+. +..-.+.... .. +.+++ .......+.|.-.|.+|
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~gl-----vy~ptGn~~p--d~-~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGL-----VYLPMGNQTP--DQ-WGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCe-----EEEeCCCccc--cc-cCCccccCcccccceEEEEeCCC
Confidence 3211000000000111111111110 11122222210 0000000000 00 00000 11112345677788888
Q ss_pred cceeeEecc-Cc---------cc-eEEEEE-cCC---EEEEEeCCCcEEEEEcCCCcceEEE
Q 016224 303 LQCIQTLTE-HT---------SV-VMSLLC-WDQ---FLLSCSLDKTIKVWFATDSGNLEVT 349 (393)
Q Consensus 303 ~~~~~~~~~-~~---------~~-v~~l~~-~~~---~l~s~s~dg~i~iwd~~~~~~~~~~ 349 (393)
|+..-.++. |. .+ ...+.. .++ .++.++.+|.+.++|-++++.+...
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 888777654 21 11 123333 342 7889999999999999988876543
No 355
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.21 Score=43.74 Aligned_cols=196 Identities=14% Similarity=0.160 Sum_probs=120.7
Q ss_pred eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEE-ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQ-LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (393)
Q Consensus 112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~-l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (393)
..|.-|........+.....-+|..+-....... +.+-...|.++.|+|+.+.|++......-.||=..+|+.++++..
T Consensus 46 f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL 125 (316)
T COG3204 46 FPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL 125 (316)
T ss_pred eeeEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc
Confidence 4455555555444444455666665432222222 445566699999999999999999888888888888999999876
Q ss_pred CC----ceEEEEeCCCEEEEE-cCCeEEEEECCCCcee--------eec--CC-CCcEEEEEEeCC--EEEEEeCCCcEE
Q 016224 191 GG----EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL--------SLS--GP-VGQVYAMAVGND--LLFAGTQDGAIL 252 (393)
Q Consensus 191 ~~----~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~--------~~~--~~-~~~v~~l~~~~~--~l~~~~~dg~I~ 252 (393)
.. +....+.++.++++. .+..+.++.+...... .+. .+ ......++|++. .|+.+-+..-+.
T Consensus 126 ~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~ 205 (316)
T COG3204 126 TGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIG 205 (316)
T ss_pred cccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcE
Confidence 53 233445567777666 5567777776655322 111 12 445668899887 788888888888
Q ss_pred EEEeccCCccccCceeecCc-------eeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224 253 AWKFNVTTNCFEPAASLKGH-------SLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTL 309 (393)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~~-------~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~ 309 (393)
||........... .....+ -..+.++.++ +.+++-+.+++.+.-.|.. |..+..+
T Consensus 206 I~~~~~~~~~l~~-~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 206 IFEVTQSPSSLSV-HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred EEEEecCCccccc-ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 8877654321111 111111 1234555565 4467777777777777764 4444444
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.98 E-value=0.2 Score=43.05 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=89.4
Q ss_pred CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE---
Q 016224 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--- 196 (393)
Q Consensus 120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~--- 196 (393)
..++.|+-.+.+.--|..+| ++..+-. -...|.+-+.- -+++++.|...|.+.+.+..+|+....+...+.+.+
T Consensus 24 T~v~igSHs~~~~avd~~sG-~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSG-NLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCC-cEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 45667888998888898888 4433211 12233332222 467899999999999999999988888877666543
Q ss_pred EEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcE-EEEEEeC--CEEEEEeCCCcEEEEEecc
Q 016224 197 MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQV-YAMAVGN--DLLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 197 ~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v-~~l~~~~--~~l~~~~~dg~I~vwd~~~ 258 (393)
+..++.++.++ .|+..+..|.++...+-.....+.+ .+-+..+ ..|+++...|.|.--..+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 34678888876 7889999999988776333222222 2223333 3666666667665544433
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.035 Score=56.39 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=61.7
Q ss_pred ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190 (393)
Q Consensus 111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 190 (393)
.+...+....-++.|+..|.+-..|+.........-..-..+|++++|+.+|.+++.|-.+|.|.+||+..++..+.+..
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 33444444445678999999998887764333333333468999999999999999999999999999999988887764
Q ss_pred C
Q 016224 191 G 191 (393)
Q Consensus 191 ~ 191 (393)
.
T Consensus 171 ~ 171 (1206)
T KOG2079|consen 171 H 171 (1206)
T ss_pred c
Confidence 4
No 358
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.002 Score=57.93 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=68.3
Q ss_pred cCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEE
Q 016224 264 EPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKV 337 (393)
Q Consensus 264 ~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~i 337 (393)
+....+..+...|..+++++ .++..++.+.+|+|.|+++...+.++..+ ..+++++|+ ..+|..|-..|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33445667778888888863 36889999999999999999999999888 789999998 458999999999999
Q ss_pred EEcCCCcce
Q 016224 338 WFATDSGNL 346 (393)
Q Consensus 338 wd~~~~~~~ 346 (393)
||++..+..
T Consensus 263 yD~R~~~~~ 271 (463)
T KOG1645|consen 263 YDMRQPEGP 271 (463)
T ss_pred EEccCCCch
Confidence 999876543
No 359
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.86 E-value=0.13 Score=52.37 Aligned_cols=101 Identities=19% Similarity=0.136 Sum_probs=65.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE-----------E-----------------EeCCCEEEEEcCCeEE
Q 016224 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC-----------M-----------------ISEGPWIFIGVTNFVK 213 (393)
Q Consensus 162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----------~-----------------~~~~~~l~~~~~~~i~ 213 (393)
+..|+.++.++.|.-.|..+|+.+..+........ . ...+++++...|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56788888889999999999998888765433210 0 0122444555888999
Q ss_pred EEECCCCceeeecCCCCcEE-----------------EEEEeCCEEEEEeC----------CCcEEEEEeccCCcc
Q 016224 214 AWNTQTNTDLSLSGPVGQVY-----------------AMAVGNDLLFAGTQ----------DGAILAWKFNVTTNC 262 (393)
Q Consensus 214 v~d~~~~~~~~~~~~~~~v~-----------------~l~~~~~~l~~~~~----------dg~I~vwd~~~~~~~ 262 (393)
-.|.++++..-..+..+.|. .-.+..+.+++|+. +|.|+-+|.++++..
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999998873323222221 11223446777643 688999999998644
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0079 Score=60.81 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=79.3
Q ss_pred cCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce
Q 016224 270 KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL 346 (393)
Q Consensus 270 ~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 346 (393)
......+.+.+.-...++.|+..|.+-..|.... .+...=..-.++|++++|+ |..++.|-.+|.|.+||+...+.+
T Consensus 86 e~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 86 EDIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred cCCCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 3344556666666778999999999999998752 2222223346789999998 778999999999999999988877
Q ss_pred EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
..+..+... ...+.++-...++..++++..-|. +|++
T Consensus 166 ~~i~e~~ap--~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAP--VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCc--cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777765544 333333332333337888888886 5654
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.79 E-value=0.0038 Score=35.81 Aligned_cols=37 Identities=38% Similarity=0.449 Sum_probs=27.5
Q ss_pred cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEE
Q 016224 303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF 339 (393)
Q Consensus 303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd 339 (393)
++++..+..|...+.++.+. +.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556666777788888887 45788888888888885
No 362
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.75 E-value=0.65 Score=45.60 Aligned_cols=102 Identities=9% Similarity=-0.035 Sum_probs=61.0
Q ss_pred cCCEEEEecCCCcEEEeeCCC-----cceeeEeccCccceEEEEE--cCCEEEEE-eCCCcEEEEEcCCCcceE------
Q 016224 282 GANKLYSGSMDNSIRVWNLET-----LQCIQTLTEHTSVVMSLLC--WDQFLLSC-SLDKTIKVWFATDSGNLE------ 347 (393)
Q Consensus 282 ~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~~------ 347 (393)
++++... .++.|.+.|.++ .+.+..+.... ....+.+ ++++++++ ..+.+|.|+|+.+.+...
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4555444 367899999998 45555554322 2334444 47776554 558999999998754310
Q ss_pred ---EEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 348 ---VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 348 ---~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
..........-+...|.++ +....|---|..|..|++..
T Consensus 364 ~~~vvaevevGlGPLHTaFDg~---G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAFDGR---GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCcceEEECCC---CCEEEeEeecceeEEEehHH
Confidence 1111111223344555433 23677778899999999875
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.011 Score=56.40 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=64.8
Q ss_pred ceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224 111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187 (393)
Q Consensus 111 ~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 187 (393)
.+.-+.|+|. -++++..+|.|.+..+. ++.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 5667788876 45578899999998887 488888887888888 999999999999999999999999999987766
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.45 Score=43.04 Aligned_cols=192 Identities=12% Similarity=0.051 Sum_probs=108.4
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------ceEE
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--------EVGC 196 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--------~~~~ 196 (393)
--..+.|+-|+..++.... +. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+.... .-..
T Consensus 43 DI~~~~i~r~~~~~g~~~~--~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 43 DILGGRIHRLDPETGKKRV--FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred eCCCCeEEEecCCcCceEE--EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 4456678888877662322 22 2333455554444555665543 46677776665533332111 1233
Q ss_pred EEeCCCEEEEEcC------------CeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCC
Q 016224 197 MISEGPWIFIGVT------------NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 197 ~~~~~~~l~~~~~------------~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~ 260 (393)
+.++|.+.+.... +.|+.++. .+... ....+-..-+.|+|+|+ ++++=+..+.|..|++....
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4466777766433 23444454 34444 44455677789999998 45555556888888876311
Q ss_pred c-cccC--ceeecCceeeE--EEEEEcCCEEEEecCCC-cEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224 261 N-CFEP--AASLKGHSLAV--VSLVVGANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCWD 323 (393)
Q Consensus 261 ~-~~~~--~~~~~~~~~~v--~~l~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 323 (393)
. .... ...+....+.. .++.-++++.+++..+| .|.+|+.. ++++..+......+++++|-+
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 1 0011 11111122222 23334456554554444 99999998 999999988778888888875
No 365
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.59 E-value=0.44 Score=41.58 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=114.5
Q ss_pred EEEEEecC-CcCCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCce---EEEEeCCCEEEEE-cCCeEE
Q 016224 141 KLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV---GCMISEGPWIFIG-VTNFVK 213 (393)
Q Consensus 141 ~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~i~ 213 (393)
+.+.++.. ...-...+.|..++.++-+.+.-| .|+.+|+.+++.......+... ....-++++.... .++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 45555542 234456788877788888887766 8999999999998888877653 1122344554455 678999
Q ss_pred EEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC--cee---eEEEEEEcCCE-EE
Q 016224 214 AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSL---AVVSLVVGANK-LY 287 (393)
Q Consensus 214 v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~~---~v~~l~~~~~~-l~ 287 (393)
+||..+-+.+.......+=..++...+.|+.......|+++|..+-. ....+.. ... .+..+.+-+.. .|
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~----~~~~i~V~~~g~pv~~LNELE~i~G~IyA 189 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK----EVRTIQVTDNGRPVSNLNELEYINGKIYA 189 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S----EEEEEE-EETTEE---EEEEEEETTEEEE
T ss_pred EEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc----eEEEEEEEECCEECCCcEeEEEEcCEEEE
Confidence 99999988775555566778888777788888778889999876542 2222221 122 33445554444 44
Q ss_pred EecCCCcEEEeeCCCcceeeEecc------------C---ccceEEEEEc---CCEEEEE
Q 016224 288 SGSMDNSIRVWNLETLQCIQTLTE------------H---TSVVMSLLCW---DQFLLSC 329 (393)
Q Consensus 288 sg~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~l~~~---~~~l~s~ 329 (393)
=.-....|...|..+|+.+..+.. + ....+.|+++ +.+++||
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 444567788899999998776631 1 2346889997 3455555
No 366
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.58 E-value=0.38 Score=40.75 Aligned_cols=195 Identities=11% Similarity=0.125 Sum_probs=105.4
Q ss_pred CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC---CEEEEEeCCCcEEEEECCC--CeEEEEEe-cCC-------c
Q 016224 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS---DKLYSGSKDETVRVWDCAS--GQCAGVIN-LGG-------E 193 (393)
Q Consensus 127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~---~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~-------~ 193 (393)
..+.|+-||..+..-...++.+.. +.++.+...+ .+.+.++..-.|--||-.. -...+++. ... .
T Consensus 35 ~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~N 112 (310)
T KOG4499|consen 35 EAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLN 112 (310)
T ss_pred ccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccc
Confidence 345667799887633334444332 4445553333 3444444444455566332 23333321 110 1
Q ss_pred eEEEEeCCCEEEEEc----------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec--c
Q 016224 194 VGCMISEGPWIFIGV----------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN--V 258 (393)
Q Consensus 194 ~~~~~~~~~~l~~~~----------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~--~ 258 (393)
-.-+.++|++..... .+.++.|-....-. .......--+.++|+.+ +.++-+.+-+|..||.. +
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~-~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE-LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCCCce-eeehhccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence 122345677743321 12344443322111 12222233356777766 66677778888778843 3
Q ss_pred CCcc-ccCceeec------CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC
Q 016224 259 TTNC-FEPAASLK------GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ 324 (393)
Q Consensus 259 ~~~~-~~~~~~~~------~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 324 (393)
+... .+.+..++ .....-+++.-+|++.++.-..++|...|..+|+.+.+++-....|++++|-|.
T Consensus 192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3211 01111111 111122445556888888889999999999999999999999999999999864
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.55 E-value=0.082 Score=53.44 Aligned_cols=138 Identities=11% Similarity=0.103 Sum_probs=91.4
Q ss_pred CCCEEEEE--cCCeEEEEECCCCcee-eecCCC-CcEEEEEEe-------CCEEEEEeCCCcEEEEEeccCCccccCce-
Q 016224 200 EGPWIFIG--VTNFVKAWNTQTNTDL-SLSGPV-GQVYAMAVG-------NDLLFAGTQDGAILAWKFNVTTNCFEPAA- 267 (393)
Q Consensus 200 ~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~~~-~~v~~l~~~-------~~~l~~~~~dg~I~vwd~~~~~~~~~~~~- 267 (393)
+..+|+.. ..+.|+-.|++.++++ ....+. .+|..++.. +...+.|-.+..+..||.+.... +++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeec
Confidence 44555554 3568999999999988 333333 236666543 23677888899999999997542 1111
Q ss_pred ee--cCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEc
Q 016224 268 SL--KGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 268 ~~--~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~ 340 (393)
.. -.......|++-. ..+||+|+.+|.||+||--..+....|.+-..+|..|..+ |++|++.+ +..|.+++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11 1223445677766 4599999999999999954333344456667899888877 77766554 557777775
No 368
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.49 Score=41.51 Aligned_cols=271 Identities=9% Similarity=0.054 Sum_probs=158.6
Q ss_pred ecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe---E
Q 016224 109 KTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ---C 184 (393)
Q Consensus 109 ~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~---~ 184 (393)
..-+..+.++.+..+.+..+.-++|.|+.+..++...-.-.. +--.++.. .|++...+..|.-+.+.|+.+.+ .
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 335556677788888888888999999986633332222222 23333333 58899999977778888887653 3
Q ss_pred EEEEecCCc-eEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCC---CCcEEEEEEeCCEEEEEeCCCcEEEEEeccC
Q 016224 185 AGVINLGGE-VGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~---~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~ 259 (393)
...+..... ...+.-.|+...++ .++-+.+-|+.......+.++ ...+.++..++++....-.+--+.+-|....
T Consensus 164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ 243 (370)
T COG5276 164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGP 243 (370)
T ss_pred eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCC
Confidence 333333322 12334455555555 888899999887665544433 3378888889985444445555777777665
Q ss_pred CccccCceeec-CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcc---eeeEeccCccceEEEEEcCCEEEEEeCCCcE
Q 016224 260 TNCFEPAASLK-GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ---CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTI 335 (393)
Q Consensus 260 ~~~~~~~~~~~-~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i 335 (393)
+.. ......+ .....+..+...+++.+....+.-+.+.|+.+.. ....+......-..+...+.++..+..+ +.
T Consensus 244 ssp-~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g 321 (370)
T COG5276 244 SSP-TVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TG 321 (370)
T ss_pred CCc-eEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCC-ce
Confidence 321 1111111 1223344567788888888888888888887532 2223333333456677777777777666 55
Q ss_pred EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.+-+....+.+......... +.+...+-+.+ ++.+...++-+.||+.-
T Consensus 322 ~vV~~s~~s~m~~~~g~~ti--~~s~~v~~~~q---~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 322 AVVDASPPSMMDKRPGRPTI--GQSCDVSVDTQ---IIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EEEeCCChhhcccccCcceE--eeecceEEEee---EEEEeecCCCEEEEEec
Confidence 55665443332222211111 11111111222 78888889999999863
No 369
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.48 E-value=0.011 Score=36.59 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=30.2
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
...|..++|+|..++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.48 E-value=0.82 Score=43.37 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=37.4
Q ss_pred eEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccC
Q 016224 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~ 259 (393)
.|.+|+........+.-..+.+.++.|..+ .|++...||.+++||+...
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 477777776655443333389999999877 8888899999999998643
No 371
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.55 Score=41.25 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=106.6
Q ss_pred EEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeec---CCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccC
Q 016224 184 CAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLS---GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~---~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~ 259 (393)
.+..+.....+..+.-.++++... .+.-+++.|+.+....++. ...+--.++..+.++..++..|.-..+.|+...
T Consensus 79 l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 79 LLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred eEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence 334444444444444455666655 6778999999887655333 233567788889998888887777889999876
Q ss_pred CccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce---eeEeccCccceEEEEEcCCEEEEEeCCCcEE
Q 016224 260 TNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCWDQFLLSCSLDKTIK 336 (393)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~ 336 (393)
+.. .+..........-..++.+|++-+.+..|+-+.+-|+..... +.... -...+.++..++++....-.+.-+.
T Consensus 159 ssP-~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~egvl 236 (370)
T COG5276 159 SSP-QLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEGVL 236 (370)
T ss_pred CCc-eeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccceE
Confidence 532 223333333444467788999999999999999999976432 22222 2226788888877766666666777
Q ss_pred EEEcCCCcceEE
Q 016224 337 VWFATDSGNLEV 348 (393)
Q Consensus 337 iwd~~~~~~~~~ 348 (393)
+-|.........
T Consensus 237 ivd~s~~ssp~~ 248 (370)
T COG5276 237 IVDVSGPSSPTV 248 (370)
T ss_pred EEecCCCCCceE
Confidence 777766554433
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.38 E-value=0.4 Score=48.70 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=89.3
Q ss_pred cCCCeEEEEECCCCcEEEEEecCCcCC-EEEEEecC-----CCCEEEEEeCCCcEEEEECCCCe--EEE----EEecCCc
Q 016224 126 EKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPS-----GSDKLYSGSKDETVRVWDCASGQ--CAG----VINLGGE 193 (393)
Q Consensus 126 ~~dg~i~vwd~~~~~~~~~~l~~h~~~-I~~i~~s~-----~~~~l~s~s~dg~v~iwd~~~~~--~~~----~~~~~~~ 193 (393)
.....|+-.|++.| +.+.++..|... |..++=.. .....+.|-.+..+..||.+-.. ++. .+.....
T Consensus 501 ~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 35678999999999 999999988755 66654321 23456677788899999987532 322 2223344
Q ss_pred eEEEE--eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEec
Q 016224 194 VGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 194 ~~~~~--~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~ 257 (393)
..++. .+|.+++++.+|.|++||-...+.. .+.+...+|..|..+.| ..+.++.+..|.+++..
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 45554 3555666668999999995443322 45567899999999988 55555567778888763
No 373
>PHA02790 Kelch-like protein; Provisional
Probab=96.18 E-value=0.54 Score=45.68 Aligned_cols=176 Identities=12% Similarity=0.092 Sum_probs=89.2
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEEEecCCc---eEEEEeCCCEEEEEc-C--CeEEEEECCCCceeeecC--
Q 016224 161 GSDKLYSGSKDE-----TVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIGV-T--NFVKAWNTQTNTDLSLSG-- 227 (393)
Q Consensus 161 ~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~--~~i~v~d~~~~~~~~~~~-- 227 (393)
++.+++.|+.++ ++..||..+++-...-....+ ......++.+.++|. + ..+..||..+++-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345556676542 567788877654333222211 222334666666653 2 468889987765443222
Q ss_pred -CCCcEEEEEEeCCEEEEEeCCC---cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc
Q 016224 228 -PVGQVYAMAVGNDLLFAGTQDG---AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL 303 (393)
Q Consensus 228 -~~~~v~~l~~~~~~l~~~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~ 303 (393)
.............+.+.|+.++ .+..||..+.. +.....+............++...+.|+ .+.+||.++.
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC
Confidence 1222233344444667776553 46678776542 2222222212222233445555556663 5778998765
Q ss_pred ce--eeEeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcC
Q 016224 304 QC--IQTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFAT 341 (393)
Q Consensus 304 ~~--~~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~ 341 (393)
+- +..+.........+...++..+.|+.+ ..+..||..
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 43 222322223334445557777777754 235555554
No 374
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.13 E-value=1.2 Score=41.67 Aligned_cols=195 Identities=19% Similarity=0.232 Sum_probs=111.7
Q ss_pred eeEecCcEEEecCCCeEEEEECCCCcEEEEEecCC--cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 016224 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192 (393)
Q Consensus 115 ~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h--~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 192 (393)
.....+.++.+..+|.|.-.|.+++ +.+-....- ...+..=.+..+|+ |+.++.++.+...|..+|+.+.......
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 3455667777889999998998888 433221111 11222222223555 8888899999999998999998888777
Q ss_pred c---eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCC---CCcEE-EEEEeCCEEEEEeC--CCcEEEEEeccCCc
Q 016224 193 E---VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGP---VGQVY-AMAVGNDLLFAGTQ--DGAILAWKFNVTTN 261 (393)
Q Consensus 193 ~---~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~---~~~v~-~l~~~~~~l~~~~~--dg~I~vwd~~~~~~ 261 (393)
. ..........+... .++.+...+..+++.. ..... ...+. ......+.++.+.. ++.+.-.|...+..
T Consensus 142 ~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 142 SPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred CeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 1 11122233344444 6788888888877765 21111 11111 11133346666665 66677777766654
Q ss_pred cccCceeec-Ccee-------eEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccC
Q 016224 262 CFEPAASLK-GHSL-------AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH 312 (393)
Q Consensus 262 ~~~~~~~~~-~~~~-------~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 312 (393)
.+....... +... ....+.. +..++.++.++.+...|..+++.+..+...
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 333111111 1110 0011111 233467778888999999999999888764
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.96 E-value=1.6 Score=41.57 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=122.8
Q ss_pred CEEEEEecCCCCEEEEE-eCCC----cEEEEECCCCeEEEEE-ecCCce-EEEEeCCCEEEE-Ec-----------CCeE
Q 016224 152 VVSGITLPSGSDKLYSG-SKDE----TVRVWDCASGQCAGVI-NLGGEV-GCMISEGPWIFI-GV-----------TNFV 212 (393)
Q Consensus 152 ~I~~i~~s~~~~~l~s~-s~dg----~v~iwd~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~-~~-----------~~~i 212 (393)
.+....++|++++||-+ +..| +|+++|+++++.+... ...... ..+..++..++. .. ...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34467889999988865 4444 5999999999876533 222222 455567666554 32 2247
Q ss_pred EEEECCCCce---eeecCCCCc--EEEEEEeCC---EEEEEeCC---CcEEEEEeccCC-ccccCceeecCceeeEEEEE
Q 016224 213 KAWNTQTNTD---LSLSGPVGQ--VYAMAVGND---LLFAGTQD---GAILAWKFNVTT-NCFEPAASLKGHSLAVVSLV 280 (393)
Q Consensus 213 ~v~d~~~~~~---~~~~~~~~~--v~~l~~~~~---~l~~~~~d---g~I~vwd~~~~~-~~~~~~~~~~~~~~~v~~l~ 280 (393)
..|.+.+... +.+...... ...+..+++ +++..... ..+.+.++.... ....+.............+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888877643 233333322 567777777 33333333 347777776641 00111111222222333344
Q ss_pred EcCCEEEEec----CCCcEEEeeCCCcce---eeEeccCcc--ceEEEEEcCCEEEE-EeCCC--cEEEEEcCCCcceEE
Q 016224 281 VGANKLYSGS----MDNSIRVWNLETLQC---IQTLTEHTS--VVMSLLCWDQFLLS-CSLDK--TIKVWFATDSGNLEV 348 (393)
Q Consensus 281 ~~~~~l~sg~----~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~l~~~~~~l~s-~s~dg--~i~iwd~~~~~~~~~ 348 (393)
..++.|+.-+ ..+.|...++.+... ...+..+.. .+..+...+++|+. -..++ .|+++++..+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 4455433322 346777778877653 224444544 56777776665554 44444 488888872333333
Q ss_pred EEeecCCccEEEEEeeeCCCCCcEEEEEeC---CCeEEEEeCCceee
Q 016224 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVII 392 (393)
Q Consensus 349 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~l 392 (393)
+.. .....+..+...+. ...+.++-++ -++|..||+.++++
T Consensus 365 ~~~-p~~g~v~~~~~~~~--~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 365 IPL-PEAGSVSGVSGDFD--SDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EES-SSSSEEEEEES-TT---SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ecC-CcceEEeccCCCCC--CCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 222 22333444443333 3334444433 36788889888764
No 376
>PHA03098 kelch-like protein; Provisional
Probab=95.92 E-value=0.72 Score=45.55 Aligned_cols=180 Identities=13% Similarity=0.150 Sum_probs=88.5
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEEEEecC---CceEEEEeCCCEEEEE-cC-----CeEEEEECCCCceeee
Q 016224 161 GSDKLYSGSKDE------TVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIG-VT-----NFVKAWNTQTNTDLSL 225 (393)
Q Consensus 161 ~~~~l~s~s~dg------~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~-~~-----~~i~v~d~~~~~~~~~ 225 (393)
++..++.|+.++ .+..||..+.+-...-... ........++.+.+.| .+ ..+..||..+++-...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 455666666542 5778888776543322222 1122333456666555 22 3577889887764422
Q ss_pred cC---CCCcEEEEEEeCCEEEEEeCC------CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC----
Q 016224 226 SG---PVGQVYAMAVGNDLLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD---- 292 (393)
Q Consensus 226 ~~---~~~~v~~l~~~~~~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d---- 292 (393)
.. .............+++.|+.+ ..+..||+.+.. +.....+........++..++..++.|+.+
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 21 111222223333366666632 357788876542 222222221111222344556566666643
Q ss_pred ----CcEEEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCC
Q 016224 293 ----NSIRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATD 342 (393)
Q Consensus 293 ----g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~ 342 (393)
..+.+||..+.+-. ..+.........+...+..++.|+.+ ..|.+||..+
T Consensus 452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 23888998875432 22221112222333456666666654 3577777654
No 377
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.83 E-value=0.39 Score=37.05 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCC--------CeEEEEEecCCceEEEEe-------CCCEEEEEcCCeEEEEECCCC
Q 016224 156 ITLPSGSDKLYSGSKDETVRVWDCAS--------GQCAGVINLGGEVGCMIS-------EGPWIFIGVTNFVKAWNTQTN 220 (393)
Q Consensus 156 i~~s~~~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~v~d~~~~ 220 (393)
-.|......|+.++.-|+|.|++... ...+..+.....+.++.. ....|+.|....+..||+..+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 34655666788888889999998763 345677778877777642 467899999999999999999
Q ss_pred ceeeecCCCCcEEEEEEe-----CCEEEEEeCCCcEEEEEecc
Q 016224 221 TDLSLSGPVGQVYAMAVG-----NDLLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 221 ~~~~~~~~~~~v~~l~~~-----~~~l~~~~~dg~I~vwd~~~ 258 (393)
..+......+.|.++.+. +.-|+..+.+-.|.-||...
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 988777777888888773 22344444455565555443
No 378
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.81 E-value=1.8 Score=41.12 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=93.6
Q ss_pred eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce------EE-----EE
Q 016224 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV------GC-----MI 198 (393)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------~~-----~~ 198 (393)
.|+||+... +++..+.--.+.|.++.|+.+ ..|+....||.++++|+. |+. .+..+..+ .+ ..
T Consensus 62 ~I~iys~sG--~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSG--KLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCC--CEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 599998654 455555444489999999875 456677799999999986 333 33322211 11 11
Q ss_pred eCCCEEEEEcCCeEEEEE-CCCCcee-eecCCC---------CcEEE-EEEeCC--EEEEEeCCCcEEEEEeccCCcccc
Q 016224 199 SEGPWIFIGVTNFVKAWN-TQTNTDL-SLSGPV---------GQVYA-MAVGND--LLFAGTQDGAILAWKFNVTTNCFE 264 (393)
Q Consensus 199 ~~~~~l~~~~~~~i~v~d-~~~~~~~-~~~~~~---------~~v~~-l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~ 264 (393)
.+..+++...++.+.+.+ ....... .+.... ..... ..++.+ ..+....++.+.+.+-....
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---- 211 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---- 211 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----
Confidence 223344444444443332 2211110 110000 00000 112222 34444455556544322210
Q ss_pred CceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccC-ccceEEEEEcCC
Q 016224 265 PAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEH-TSVVMSLLCWDQ 324 (393)
Q Consensus 265 ~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~ 324 (393)
.+. ...++..++. +++++|.-..+|.+.+.+..-.+.+..+... ......+.|.|+
T Consensus 212 ---~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 212 ---QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ---ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 011 1235655555 5678888888999999887666666666544 334456666654
No 379
>PHA03098 kelch-like protein; Provisional
Probab=95.78 E-value=1 Score=44.52 Aligned_cols=173 Identities=12% Similarity=0.116 Sum_probs=82.6
Q ss_pred eEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCccccCceeecCceeeEEEEEEc
Q 016224 211 FVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG 282 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 282 (393)
.+..||..+++...+.. .......+.+...+++.|+.+ ..+..||..+.. +.....+............+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK--WREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc--eeeCCCcCcCCccceEEEEC
Confidence 56788888776553322 222233333444477777765 346677766542 22222222111122223445
Q ss_pred CCEEEEecCC------CcEEEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCC--------CcEEEEEcCCCcce
Q 016224 283 ANKLYSGSMD------NSIRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLD--------KTIKVWFATDSGNL 346 (393)
Q Consensus 283 ~~~l~sg~~d------g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d--------g~i~iwd~~~~~~~ 346 (393)
+..++.|+.+ ..+..||+.+.+-. ..+.........+...+..++.|+.+ ..+.+||..+.+ .
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W 468 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-W 468 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc-e
Confidence 6666667632 45888998764432 22211111222333445566666543 237888886543 2
Q ss_pred EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC-----CeEEEEeCCce
Q 016224 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-----NSVRFYDLPSV 390 (393)
Q Consensus 347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d-----g~I~iwd~~s~ 390 (393)
..+...........++. . ++.+++.|+.+ ..|.+||..+.
T Consensus 469 ~~~~~~~~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 469 TELSSLNFPRINASLCI-F---NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred eeCCCCCcccccceEEE-E---CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 22211111101111111 1 23366667654 47888887764
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.22 Score=47.04 Aligned_cols=139 Identities=9% Similarity=0.101 Sum_probs=88.0
Q ss_pred CCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---------EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224 200 EGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---------LLFAGTQDGAILAWKFNVTTNCFEPAAS 268 (393)
Q Consensus 200 ~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 268 (393)
+..+|+.. ....++-.|++.++.+..-.....|.-+.+.|+ .-++|-.+..|.-||.+-.... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eeee
Confidence 44455543 445888889999998844443344666666665 3456778899999999865431 1111
Q ss_pred ecCc----eeeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224 269 LKGH----SLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 269 ~~~~----~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 341 (393)
.+.| .....|++- ...++++|+.+|.|++||--..+....+.+-..+|.-|... |++|+.. .+..+.+.++.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 2222 122344444 35699999999999999974334445567777788776655 7766544 35677776653
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.75 E-value=2.7 Score=42.75 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=27.8
Q ss_pred CCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCC
Q 016224 227 GPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 227 ~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~ 260 (393)
.....|..+.|+|. .|++-+.|+++++||+....
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 45567889999875 88899999999999997543
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.71 E-value=2.9 Score=42.85 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=90.0
Q ss_pred EEEEeCC---EEEEEeC----------CCcEEEEEeccCCccccCceeecCceeeEEEEE-EcCCEEEEecCCCcEEEee
Q 016224 234 AMAVGND---LLFAGTQ----------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLYSGSMDNSIRVWN 299 (393)
Q Consensus 234 ~l~~~~~---~l~~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~l~sg~~dg~i~iwd 299 (393)
++.|..| ++++|+. .|.|.++.+... ...+.+.... -.+.+.++. +++.++|. -...|++|+
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~-v~Gav~aL~~fngkllA~--In~~vrLye 854 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETV-VKGAVYALVEFNGKLLAG--INQSVRLYE 854 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeee-eccceeehhhhCCeEEEe--cCcEEEEEE
Confidence 3345444 6666643 477888887762 2123333322 234455554 45555543 456899999
Q ss_pred CCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEEE
Q 016224 300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376 (393)
Q Consensus 300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~ 376 (393)
+.+.+.++.-..+..++..+... ++.+++|..-+.+.+...+..+ .+..+...-.....+++.+..+. .++.+
T Consensus 855 ~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d----~ylga 930 (1096)
T KOG1897|consen 855 WTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD----TYLGA 930 (1096)
T ss_pred ccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc----eEEee
Confidence 99887777666677777766655 8999999998888876665433 34444444444556666555432 46666
Q ss_pred eCCCeEEEEeCC
Q 016224 377 CNDNSVRFYDLP 388 (393)
Q Consensus 377 s~dg~I~iwd~~ 388 (393)
..+|.+.+-..+
T Consensus 931 e~~gNlf~v~~d 942 (1096)
T KOG1897|consen 931 ENSGNLFTVRKD 942 (1096)
T ss_pred cccccEEEEEec
Confidence 677877776554
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.71 E-value=1.7 Score=40.16 Aligned_cols=255 Identities=13% Similarity=0.052 Sum_probs=116.1
Q ss_pred ecCCC--eEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE---EE
Q 016224 125 GEKCK--FLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC---MI 198 (393)
Q Consensus 125 g~~dg--~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~ 198 (393)
+..+| .+++.|+.++ + +.+|..+. .......++++++.|+-......|+..|+++.+....+..+..... +.
T Consensus 54 s~~dg~~nly~lDL~t~-~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 54 SDFDGNRNLYLLDLATG-E-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp E-TTSS-EEEEEETTT--E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEE
T ss_pred eccCCCcceEEEEcccC-E-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccccccee
Confidence 44444 6777788886 3 34444433 2222456678888887776667899999999987777776655432 22
Q ss_pred --eCCCEEEEE----c-------------------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeC---
Q 016224 199 --SEGPWIFIG----V-------------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ--- 247 (393)
Q Consensus 199 --~~~~~l~~~----~-------------------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~--- 247 (393)
+++..++.. . ...|.-.|+.+++...+......+..+.|+|. +|+-+-+
T Consensus 132 ~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw 211 (386)
T PF14583_consen 132 ANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPW 211 (386)
T ss_dssp E-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-T
T ss_pred eCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCc
Confidence 345544331 1 12456667888877777677778888999987 4444332
Q ss_pred CCc-EEEEEeccCCccccCceeecCceeeEEE--EEEcCCEEE-----EecCCCcEEEeeCCCcceeeEeccCccceEEE
Q 016224 248 DGA-ILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLY-----SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319 (393)
Q Consensus 248 dg~-I~vwd~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~l~-----sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 319 (393)
+.. -+||-++.......++..... ...+.. ...+|..|. .++.+..|.-+|+.+++....... ....-+
T Consensus 212 ~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~ 288 (386)
T PF14583_consen 212 DLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHF 288 (386)
T ss_dssp TTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEE
T ss_pred ceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--Cceeee
Confidence 221 367777665432222222111 111111 122454322 123355677788888765332221 122222
Q ss_pred EEc--CCEEEEEeCCC----------------cEEEEEcCCCcceEEEEeec---------CCccEEEEEeeeCCCCCcE
Q 016224 320 LCW--DQFLLSCSLDK----------------TIKVWFATDSGNLEVTYTHN---------EEHGVLALCGMPDSEGKPV 372 (393)
Q Consensus 320 ~~~--~~~l~s~s~dg----------------~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~ 372 (393)
..+ +++++-=+.|. .|+++++..+.. ..+..|. ....---..|+||+ +.+
T Consensus 289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDg--k~V 365 (386)
T PF14583_consen 289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDG--KWV 365 (386)
T ss_dssp EE-TTSSEEEEEE-------------------EEEEEETTTTEE-EEEEE-------BTTBSSTT----EE-TTS--SEE
T ss_pred EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce-eeeeeccCcceeecCCCccCCCCCccCCCC--CEE
Confidence 222 44544333332 466777765433 2233221 11123456788874 457
Q ss_pred EEEEeCCCeEEEEeC
Q 016224 373 LLCSCNDNSVRFYDL 387 (393)
Q Consensus 373 l~s~s~dg~I~iwd~ 387 (393)
|+++...|...||-+
T Consensus 366 lF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 366 LFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEE-TTSS-EEEEE
T ss_pred EEECCCCCCccEEEE
Confidence 778878888777654
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.081 Score=50.79 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=70.2
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceE---EEEeCCCEEEEE-cCCeEEEEECCCCceee
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVG---CMISEGPWIFIG-VTNFVKAWNTQTNTDLS 224 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~---~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~ 224 (393)
...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++..+ ..+. ++-++|+++++| .||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567889999999999999999999999988 7778888743 3333 455799999999 88999999999988763
Q ss_pred e--cCCCCcEEEEEEeC
Q 016224 225 L--SGPVGQVYAMAVGN 239 (393)
Q Consensus 225 ~--~~~~~~v~~l~~~~ 239 (393)
- ......|.++-|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 3 44556677776664
No 385
>PHA02790 Kelch-like protein; Provisional
Probab=95.65 E-value=0.63 Score=45.23 Aligned_cols=171 Identities=11% Similarity=0.033 Sum_probs=84.0
Q ss_pred eEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCC--CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCE
Q 016224 211 FVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD--GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK 285 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~d--g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 285 (393)
.+..||..+++-..... .......+.....+.++|+.+ ..+..||.... .+.....+............++..
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r~~~~~~~~~g~I 365 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPRCNPAVASINNVI 365 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCCcccEEEEECCEE
Confidence 57788988876543222 222223333444466777654 35777776543 223333332222223344556777
Q ss_pred EEEecCCC---cEEEeeCCCcceee--EeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEE
Q 016224 286 LYSGSMDN---SIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360 (393)
Q Consensus 286 l~sg~~dg---~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 360 (393)
.+.|+.++ .+..||.++.+-.. .+.........+.+.+...+.| |.+.+||..+. ....+........-..
T Consensus 366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~-~W~~~~~m~~~r~~~~ 441 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSN-TWTLIDDPIYPRDNPE 441 (480)
T ss_pred EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCC-cEeEcCCCCCCccccE
Confidence 77777553 47788887644322 1221112222334445555555 35778888643 2332222111111111
Q ss_pred EEeeeCCCCCcEEEEEeCC-----CeEEEEeCCcee
Q 016224 361 LCGMPDSEGKPVLLCSCND-----NSVRFYDLPSVI 391 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~d-----g~I~iwd~~s~~ 391 (393)
++.. ++++.+.|+.+ ..|..||..+.+
T Consensus 442 ~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 442 LIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEE----CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 1111 33377777654 468888887653
No 386
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.62 E-value=0.16 Score=50.58 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=75.1
Q ss_pred EEEEeCC--EEEEEe----CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcce
Q 016224 234 AMAVGND--LLFAGT----QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQC 305 (393)
Q Consensus 234 ~l~~~~~--~l~~~~----~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~ 305 (393)
-..|+|. +|++++ ..|+|.|| ..++ ++.... .....+.+++|.+. .|+.|-.-|.+.+|...+.+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtG----EPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTG----EPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCC----CCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3456665 555554 46888888 3334 222211 12334567889876 477888899999999988877
Q ss_pred eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224 306 IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 306 ~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 341 (393)
......|..+|..+.|+ |..|+++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77777899999999999 7899999999999999775
No 387
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.51 E-value=1.5 Score=38.23 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=99.2
Q ss_pred EEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCC--ceE--EEEeCCCEEEEE-cCCeEEEEEC
Q 016224 144 TQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGG--EVG--CMISEGPWIFIG-VTNFVKAWNT 217 (393)
Q Consensus 144 ~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~~~--~~~~~~~~l~~~-~~~~i~v~d~ 217 (393)
+.+.+-...+..|+|.|+.+ ++++....+.|...+. +|+.++.+...+ ... ....++.++++. .++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45666667799999999766 5555667788888886 588888887653 233 333456666665 3678888887
Q ss_pred CCCc---------eeee--c-CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc--CCccccC-----ceeecCceeeE
Q 016224 218 QTNT---------DLSL--S-GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV--TTNCFEP-----AASLKGHSLAV 276 (393)
Q Consensus 218 ~~~~---------~~~~--~-~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~--~~~~~~~-----~~~~~~~~~~v 276 (393)
.... .+.+ . .+...+-.++|++. .|+++-+..-..+|.+.. ....... ..........+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 0111 1 24456889999886 666777777777777765 1110000 00011122345
Q ss_pred EEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCc---------cceEEEEEc-CCEEEEEeCCCcEE
Q 016224 277 VSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHT---------SVVMSLLCW-DQFLLSCSLDKTIK 336 (393)
Q Consensus 277 ~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~~-~~~l~s~s~dg~i~ 336 (393)
.++++++ ++++.......|..+| .+|+.+..+.-.. ..--.|+++ ...|...++-+..+
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence 6677763 4777788889999999 6677766654222 134566666 22344444444333
No 388
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.46 E-value=2.3 Score=40.50 Aligned_cols=172 Identities=12% Similarity=0.073 Sum_probs=101.6
Q ss_pred eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe---CC-CcEEEEECCCCeEEEEEe--cCCceEEEEeCCCE
Q 016224 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS---KD-ETVRVWDCASGQCAGVIN--LGGEVGCMISEGPW 203 (393)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~ 203 (393)
.+.+=|.+ + .....+..-...+..-+|+|+++.++-.+ .. ..+.++++++++...... .....-.+.++++.
T Consensus 174 ~l~~~D~d-g-~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-G-YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-C-cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence 44444443 4 34445554556777788999988766542 22 469999999987655554 34445667788888
Q ss_pred EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224 204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276 (393)
Q Consensus 204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v 276 (393)
|+.. .++ .|.++|+.++....+....+.-..=.|+|+ ++++.+..|.-.||-....... ....+...-....
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcC
Confidence 7765 334 788889988886555544444445667777 6666777777555544433221 1112222222224
Q ss_pred EEEEEcCCEEEEecC-CCc--EEEeeCCCcc
Q 016224 277 VSLVVGANKLYSGSM-DNS--IRVWNLETLQ 304 (393)
Q Consensus 277 ~~l~~~~~~l~sg~~-dg~--i~iwd~~~~~ 304 (393)
..++.++++|+..+. +|. |.+.|+.++.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 455667777665553 344 6666665554
No 389
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.28 E-value=3.5 Score=41.09 Aligned_cols=183 Identities=11% Similarity=0.083 Sum_probs=87.9
Q ss_pred cCCEEEEEecCCCCEEEEEe------CCC--cEEEEECCCCeEEEEEecCC-ceEEEEeCCCEEEEEcC-----------
Q 016224 150 QKVVSGITLPSGSDKLYSGS------KDE--TVRVWDCASGQCAGVINLGG-EVGCMISEGPWIFIGVT----------- 209 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s------~dg--~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~----------- 209 (393)
...+.+.+++|+++.++... .|. .|.+++.. +.......... ..-.+.+++..+.+..+
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 34678899999999887665 244 44444542 22222222111 12233345454443322
Q ss_pred --CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec---cCCccccCceeec-CceeeEEEEEE
Q 016224 210 --NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN---VTTNCFEPAASLK-GHSLAVVSLVV 281 (393)
Q Consensus 210 --~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~---~~~~~~~~~~~~~-~~~~~v~~l~~ 281 (393)
+.+.+.++..+.... .....|..+.|++| .++... ++.|++--+. .+.........+. .-...+..+.|
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 234444444433322 33567999999999 444333 4777773322 2211111111121 22223467778
Q ss_pred c-CCEEEEecCCCcEEEeeCCC-cceeeEecc--CccceEEEEEcCCEEEEEeCCCcEE
Q 016224 282 G-ANKLYSGSMDNSIRVWNLET-LQCIQTLTE--HTSVVMSLLCWDQFLLSCSLDKTIK 336 (393)
Q Consensus 282 ~-~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~~~~~l~s~s~dg~i~ 336 (393)
. +..|+++..++...+|-+.- |.....+.. ....+.+|+-....|+....++.+.
T Consensus 505 ~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~ 563 (591)
T PRK13616 505 RTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQ 563 (591)
T ss_pred ecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEE
Confidence 5 33455655555444454321 222222222 2455666666655555555555333
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.87 Score=39.85 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe
Q 016224 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS 169 (393)
Q Consensus 127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s 169 (393)
.-|.|-|||...+++.+.++..|.-.-..+.+.+||+.|+.+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3467999999999999999999998899999999999988764
No 391
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.12 E-value=1.3 Score=44.42 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=65.3
Q ss_pred CEEEEecCCCcEEEeeCCC-------c-------------ceeeEeccCccceEEEEEc----CCEEEEEeCCCcEEEEE
Q 016224 284 NKLYSGSMDNSIRVWNLET-------L-------------QCIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWF 339 (393)
Q Consensus 284 ~~l~sg~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd 339 (393)
+.|+.+..||.|.+|.+++ . ++...+. -...++.+++. .++||+++....|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 4677777788888885532 0 0111111 23356778876 45778888888888886
Q ss_pred cCCC-cceEEEEeecCCccEEEEEeeeCCCCCc---EEEEEeCCCeEEEEeC
Q 016224 340 ATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKP---VLLCSCNDNSVRFYDL 387 (393)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~l~s~s~dg~I~iwd~ 387 (393)
.... .+......+.....|-+++|.++..+.. .|++++-.|.+-+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6442 2222222334555688899998874433 7888899999999887
No 392
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=3 Score=39.21 Aligned_cols=186 Identities=14% Similarity=0.154 Sum_probs=115.8
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCC-c-eEEEEe
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGG-E-VGCMIS 199 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~-~-~~~~~~ 199 (393)
...+..|.+.|..+. +.+....--. .-..++++++++.++.+.. ++++.+.|..+++.+.+..... + -..+.+
T Consensus 92 ~~~~~~v~vid~~~~-~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATN-TVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCccc-ceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC
Confidence 344788899997765 4444333222 5678999999988887766 6899999999999888866543 2 233446
Q ss_pred CCCEEEEE--cCCeEEEEECCCCceee-----ecCCCCcEEEEEEeCC--EEEEEeCC---CcEEEEEeccCCccccCce
Q 016224 200 EGPWIFIG--VTNFVKAWNTQTNTDLS-----LSGPVGQVYAMAVGND--LLFAGTQD---GAILAWKFNVTTNCFEPAA 267 (393)
Q Consensus 200 ~~~~l~~~--~~~~i~v~d~~~~~~~~-----~~~~~~~v~~l~~~~~--~l~~~~~d---g~I~vwd~~~~~~~~~~~~ 267 (393)
++..+.+. .++.|.+.|........ ..........+.++++ .+.+.... +.+...|.......... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~-~ 248 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD-L 248 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec-c
Confidence 88866665 47899999987776653 1222333455666666 33333322 57888777765321100 0
Q ss_pred eecCceeeEEEEEEcCCEEEEec-CCCcEEEeeCCCcceeeEeccCc
Q 016224 268 SLKGHSLAVVSLVVGANKLYSGS-MDNSIRVWNLETLQCIQTLTEHT 313 (393)
Q Consensus 268 ~~~~~~~~v~~l~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~ 313 (393)
....-...-..+.+.+..+++.. ..+.+.+.|..+.+....+....
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 01100122234556677766663 45899999999888777665443
No 393
>smart00356 ZnF_C3H1 zinc finger.
Probab=94.90 E-value=0.017 Score=31.01 Aligned_cols=22 Identities=23% Similarity=0.809 Sum_probs=19.1
Q ss_pred cceeeeecccccCCCC-CCcccc
Q 016224 35 QKVCNYWRAGKCNRFP-CPYLHR 56 (393)
Q Consensus 35 ~~~~~~~~~~~~~~~~-~~~~~~ 56 (393)
.++|.+|+.|.|++-+ |+|+|.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCc
Confidence 4589999999999976 999985
No 394
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.71 E-value=4 Score=42.25 Aligned_cols=172 Identities=11% Similarity=0.131 Sum_probs=109.0
Q ss_pred eEEEEECCCCceeeecCCC-----CcEEEEEEeCC----EEEEEe-----------CCCcEEEEEeccCCccccCceeec
Q 016224 211 FVKAWNTQTNTDLSLSGPV-----GQVYAMAVGND----LLFAGT-----------QDGAILAWKFNVTTNCFEPAASLK 270 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~~~~~-----~~v~~l~~~~~----~l~~~~-----------~dg~I~vwd~~~~~~~~~~~~~~~ 270 (393)
.|+++|..+++.+....+. -.+.++.|+.. +++++. .+|.++.|++-......+.+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T- 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT- 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc-
Confidence 4788888877766332222 23555556443 333332 24557778776654433333332
Q ss_pred CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEcCCEEEEEeCCCcEEEEEcCCC-cceE
Q 016224 271 GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDS-GNLE 347 (393)
Q Consensus 271 ~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~-~~~~ 347 (393)
.-...+.+++...+++++| ....+++||+-..++++.... -...|+.+.+.+..+++|...-.+.++-.+.. .++.
T Consensus 933 ~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred CCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence 2356677888777766665 457899999988777655442 35567888888899999988777777665543 3445
Q ss_pred EEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 348 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.+.....+..++++.+.... .++.+..=|.+.+-.++
T Consensus 1012 ~fadD~~pR~Vt~~~~lD~~----tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELLDYD----TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEeCCCccceeeEEEEecCC----ceeeccccCcEEEEECC
Confidence 55555555567777666443 48888888888877665
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.65 E-value=2.8 Score=36.70 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=88.0
Q ss_pred CcEEEEEE-eCC-EEEEEeCCC--cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEE-EecCCCcEEEeeCCCcc
Q 016224 230 GQVYAMAV-GND-LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY-SGSMDNSIRVWNLETLQ 304 (393)
Q Consensus 230 ~~v~~l~~-~~~-~l~~~~~dg--~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~-sg~~dg~i~iwd~~~~~ 304 (393)
.....+.| ..+ ++-+.+.-| .|+.+|+.++... ....+.. ...--.++.-++.|+ ..=.++...+||..+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~--~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL--QSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE--EEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE--EEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccce
Confidence 44567788 555 555666655 5888888876421 1112221 111223333345444 34468899999999999
Q ss_pred eeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccE---EEEEeeeCCCCCcEEEEEeCCCe
Q 016224 305 CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV---LALCGMPDSEGKPVLLCSCNDNS 381 (393)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~l~s~s~dg~ 381 (393)
.+.++.-. ..=..++.+++.|+.......|+++|..+.+....+.......++ ..+.+. ++.+.|=-=....
T Consensus 122 ~~~~~~y~-~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i----~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPYP-GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI----NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE-S-SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE----TTEEEEEETTSSE
T ss_pred EEEEEecC-CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE----cCEEEEEeCCCCe
Confidence 99988643 466788888888888888889999999877766665554433333 334443 2223333334556
Q ss_pred EEEEeCCceee
Q 016224 382 VRFYDLPSVII 392 (393)
Q Consensus 382 I~iwd~~s~~l 392 (393)
|...|..+|++
T Consensus 197 I~~Idp~tG~V 207 (264)
T PF05096_consen 197 IVRIDPETGKV 207 (264)
T ss_dssp EEEEETTT-BE
T ss_pred EEEEeCCCCeE
Confidence 77777777654
No 396
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=2.2 Score=35.67 Aligned_cols=149 Identities=11% Similarity=0.012 Sum_probs=87.6
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCeEEEEEecCC-ce--EEEEe--CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEE
Q 016224 161 GSDKLYSGSKD--ETVRVWDCASGQCAGVINLGG-EV--GCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233 (393)
Q Consensus 161 ~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~-~~--~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~ 233 (393)
++.++.+.+.- ..|++||+.+++.+....... .+ ..+.. +.-+..+=.++.-..+|..+-+.+......+.=.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 44566666543 479999999999988877662 11 11111 2223344477888889988888776666667778
Q ss_pred EEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCce-eeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS-LAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTL 309 (393)
Q Consensus 234 ~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 309 (393)
.++...+.|+.+....+++.-|..+-...........+.. ..+..+.| +|...|---.+..|...|..+|+.+..+
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 8888777777777777777777655432212222222211 11223333 3434444444556666677777766554
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.56 E-value=0.15 Score=31.55 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=28.1
Q ss_pred cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 353 ~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
.....+..++|+|..+ +||.++.||.|.++.+.
T Consensus 9 ~l~~~v~~~~w~P~md---LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMD---LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCC---EEEEEECCCeEEEEECC
Confidence 3344588999999887 99999999999999984
No 398
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=4.2 Score=38.24 Aligned_cols=251 Identities=14% Similarity=0.134 Sum_probs=135.0
Q ss_pred EEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC---CceEEEEeCCCEEEE
Q 016224 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFI 206 (393)
Q Consensus 131 i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 206 (393)
+.+++..+. +....+..+. ....+...+++..++... ....+.+.+............. ..-..+.+.+..+.+
T Consensus 13 ~~v~~~~~~-~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTN-KVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeeccc-EEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 566666555 4444444343 455677778775444433 2224555555422222222222 111233345554444
Q ss_pred E--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC---CCcEEEEEeccCCccccCceee-cCceeeEEE
Q 016224 207 G--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASL-KGHSLAVVS 278 (393)
Q Consensus 207 ~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~---dg~I~vwd~~~~~~~~~~~~~~-~~~~~~v~~ 278 (393)
. .++.|.+.|..+.+.............++++++ .+.++.. ++.+.+.|..+... .... .+....-..
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~----~~~~~vG~~P~~~a 166 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV----TATIPVGNTPTGVA 166 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE----EEEEecCCCcceEE
Confidence 3 468999999888877744444446777888776 4444333 67888888776532 2222 222222233
Q ss_pred EEEcCCEEEE-ecCCCcEEEeeCCCcceee-E----eccCcc-ceEEEEEcCCEEEEEeCC---CcEEEEEcCCCcceEE
Q 016224 279 LVVGANKLYS-GSMDNSIRVWNLETLQCIQ-T----LTEHTS-VVMSLLCWDQFLLSCSLD---KTIKVWFATDSGNLEV 348 (393)
Q Consensus 279 l~~~~~~l~s-g~~dg~i~iwd~~~~~~~~-~----~~~~~~-~v~~l~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~ 348 (393)
+..+++.++. -..++.|.+.|..+..... . +..... ....+..++.++...... +.+...|..+......
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 3445665444 4578999999987665553 1 221222 223344446654444332 5888888876655444
Q ss_pred EEeecCCccEEEEEeeeCCCCCcEEEEE-eCCCeEEEEeCCcee
Q 016224 349 TYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSVI 391 (393)
Q Consensus 349 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~-s~dg~I~iwd~~s~~ 391 (393)
....... ....+...|++. ++... +..+.+.+-|..+..
T Consensus 247 ~~~~~~~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 247 DLPVGSG-APRGVAVDPAGK---AAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ccccccC-CCCceeECCCCC---EEEEEecCCCeEEEEeCCCCc
Confidence 2222222 244455655544 55555 334778888776654
No 399
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.49 E-value=2.8 Score=43.35 Aligned_cols=167 Identities=13% Similarity=0.160 Sum_probs=105.6
Q ss_pred eEEEEECCCCcEEEEEecCC----cCCEEEEEecCCCC--EEEEEeC-----------CCcEEEEECC-CCe---EEEEE
Q 016224 130 FLHSWTVGDGFKLLTQLEGH----QKVVSGITLPSGSD--KLYSGSK-----------DETVRVWDCA-SGQ---CAGVI 188 (393)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h----~~~I~~i~~s~~~~--~l~s~s~-----------dg~v~iwd~~-~~~---~~~~~ 188 (393)
.|++.|..++ +.+..+... .-.|.++.|+.... +++.+.. +|.+..|++- .++ .+...
T Consensus 854 ~I~~~d~~s~-~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSG-KIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCC-ceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 4788887776 444433321 23566677754332 3444332 3446666642 333 44445
Q ss_pred ecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee---eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccC
Q 016224 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP 265 (393)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~ 265 (393)
.....+.++.+....+.+|....+++|++...+.+ .+......|..+.+....+++|...-.|.++..+...+.
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~--- 1009 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQ--- 1009 (1205)
T ss_pred CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCe---
Confidence 56677888888888999999999999999888766 233346788899998889999988888887776665432
Q ss_pred ceeecC--ceeeEEEEE-EcCCEEEEecCCCcEEEeeC
Q 016224 266 AASLKG--HSLAVVSLV-VGANKLYSGSMDNSIRVWNL 300 (393)
Q Consensus 266 ~~~~~~--~~~~v~~l~-~~~~~l~sg~~dg~i~iwd~ 300 (393)
+..+.. -...|+++. .+-+.+|.+..-|.+.+-.+
T Consensus 1010 l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEEeCCCccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 222222 122344443 35667777777777766654
No 400
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.44 E-value=7 Score=40.32 Aligned_cols=254 Identities=12% Similarity=0.122 Sum_probs=131.0
Q ss_pred EEEecCCCeEEEEECC-CC-----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE-------EEE
Q 016224 122 CMYGEKCKFLHSWTVG-DG-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA-------GVI 188 (393)
Q Consensus 122 ~~~g~~dg~i~vwd~~-~~-----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-------~~~ 188 (393)
.+.+..+|.+...-+. ++ ..+...+-+..+-..||..-++ ..|++||.-|.=++-.+.+..-. .++
T Consensus 272 yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~ 350 (1096)
T KOG1897|consen 272 YLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDVGSYVVILETF 350 (1096)
T ss_pred EEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccC-ceEEEeccCCceeeEEccccCCCCchhhhhhhc
Confidence 3456666666554433 22 0111222234444555555544 47888988776666666543222 233
Q ss_pred ecCCceEEEE-------eCCCEEEEE---cCCeEEEEECCCCc----eeeecCCCCcEEEEE--EeCC---EEEEEeCCC
Q 016224 189 NLGGEVGCMI-------SEGPWIFIG---VTNFVKAWNTQTNT----DLSLSGPVGQVYAMA--VGND---LLFAGTQDG 249 (393)
Q Consensus 189 ~~~~~~~~~~-------~~~~~l~~~---~~~~i~v~d~~~~~----~~~~~~~~~~v~~l~--~~~~---~l~~~~~dg 249 (393)
..-.++..+. ..++++.++ .|+++++....-+- ...+.+ ...+..+. ++++ +|+.+-.+-
T Consensus 351 ~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~e 429 (1096)
T KOG1897|consen 351 VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISE 429 (1096)
T ss_pred ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccc
Confidence 3333433332 135566654 57788887644332 223444 44566666 4433 555544333
Q ss_pred cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEE-EcCCEEEE
Q 016224 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL-CWDQFLLS 328 (393)
Q Consensus 250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~~~~~l~s 328 (393)
-++..+... ........+......+.+-...++.|+-.. ...||+++-. ..+..+..........+ .....++.
T Consensus 430 -Trvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvv 504 (1096)
T KOG1897|consen 430 -TRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVV 504 (1096)
T ss_pred -eEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEE
Confidence 334444432 111112222222223333233455544443 3458888754 23455544333333333 33456777
Q ss_pred EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc---EEEEEeCCCeEE
Q 016224 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP---VLLCSCNDNSVR 383 (393)
Q Consensus 329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~l~s~s~dg~I~ 383 (393)
++.++.+...++.... +.....+..+..+.++.++|-+++.. +++.|.++..+.
T Consensus 505 A~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~ 561 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM 561 (1096)
T ss_pred ecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE
Confidence 7777777777776555 45555555566788898888765555 888888766544
No 401
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.13 E-value=5.4 Score=37.87 Aligned_cols=217 Identities=17% Similarity=0.163 Sum_probs=113.0
Q ss_pred ecCCCeEEEEECCCCcEEEE-EecCCcCCEEEEEecCCCCEEEEEeCCC-----------cEEEEECCCCeEE--EEEec
Q 016224 125 GEKCKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDE-----------TVRVWDCASGQCA--GVINL 190 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~-~l~~h~~~I~~i~~s~~~~~l~s~s~dg-----------~v~iwd~~~~~~~--~~~~~ 190 (393)
|+....|++.|+.++ +.+. .+..-. . ..+.|.++++.|+....+. .|..|.+.+.... ..+..
T Consensus 146 G~e~~~l~v~Dl~tg-~~l~d~i~~~~-~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 146 GSEWYTLRVFDLETG-KFLPDGIENPK-F-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp TSSEEEEEEEETTTT-EEEEEEEEEEE-S-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred CCceEEEEEEECCCC-cCcCCcccccc-c-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 444557999999999 5544 333221 1 2389999988877665443 3788888876432 34433
Q ss_pred CC--c-e--EEEEeCCCEEEEE----cC-CeEEEEECCCC-----ceeeecC-CCCcEEEEEEeCCEEEEEe----CCCc
Q 016224 191 GG--E-V--GCMISEGPWIFIG----VT-NFVKAWNTQTN-----TDLSLSG-PVGQVYAMAVGNDLLFAGT----QDGA 250 (393)
Q Consensus 191 ~~--~-~--~~~~~~~~~l~~~----~~-~~i~v~d~~~~-----~~~~~~~-~~~~v~~l~~~~~~l~~~~----~dg~ 250 (393)
.. . . .....++++++.. .+ ..+.+.+.... ....+.. ..+....+....+.|+.-+ ..+.
T Consensus 223 ~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~ 302 (414)
T PF02897_consen 223 PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGR 302 (414)
T ss_dssp TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-E
T ss_pred cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcE
Confidence 22 2 1 2234588888763 23 46888888875 3333333 3344455555566333322 2356
Q ss_pred EEEEEeccCCccccCceeecCcee--eEEEEEEcCCEEEEec-CCC--cEEEeeCCCcceeeEec-cCccceEEEEEc--
Q 016224 251 ILAWKFNVTTNCFEPAASLKGHSL--AVVSLVVGANKLYSGS-MDN--SIRVWNLETLQCIQTLT-EHTSVVMSLLCW-- 322 (393)
Q Consensus 251 I~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~l~sg~-~dg--~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~-- 322 (393)
|...++...... .....+..+.. .+..+...+++|+... .++ .|+++|+..+.....+. ...+.|..+...
T Consensus 303 l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~ 381 (414)
T PF02897_consen 303 LVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFD 381 (414)
T ss_dssp EEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT
T ss_pred EEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCC
Confidence 766776665321 11113333333 5677777777655444 333 68899998333333333 233334444432
Q ss_pred -CCEEEEE-eC--CCcEEEEEcCCCcc
Q 016224 323 -DQFLLSC-SL--DKTIKVWFATDSGN 345 (393)
Q Consensus 323 -~~~l~s~-s~--dg~i~iwd~~~~~~ 345 (393)
+.+.++- |. -.++..||+.+++.
T Consensus 382 ~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 382 SDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp -SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 2233332 22 24566677765543
No 402
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.57 E-value=7.1 Score=38.98 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=87.5
Q ss_pred eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC------------CcEEEEECCCCeEEEEEecCCceEEE
Q 016224 130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------------ETVRVWDCASGQCAGVINLGGEVGCM 197 (393)
Q Consensus 130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~ 197 (393)
.|.+++.... ....+.+. ..+.-.|+|+|+.|++.+.. +.+.+.+++.++....+...-....+
T Consensus 380 ~Lwv~~~gg~--~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~w 455 (591)
T PRK13616 380 SLWVGPLGGV--AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQL 455 (591)
T ss_pred EEEEEeCCCc--ceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEE
Confidence 5555565333 22223332 37788899998888877532 23333344443332211222222345
Q ss_pred EeCCCEEEEEcCCeEEE---EECCCCcee-----eecC-CCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCce
Q 016224 198 ISEGPWIFIGVTNFVKA---WNTQTNTDL-----SLSG-PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA 267 (393)
Q Consensus 198 ~~~~~~l~~~~~~~i~v---~d~~~~~~~-----~~~~-~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~ 267 (393)
.++|..++.-.++.|.+ -....+... .+.. ....+.++.|.++ .|+++..++...+|.+.-....... .
T Consensus 456 SpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~ 534 (591)
T PRK13616 456 SRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-L 534 (591)
T ss_pred CCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccc-c
Confidence 57888888766777776 444444411 1222 2334688899887 5667666666666665543221111 0
Q ss_pred eecCceeeEEEEEEcCCEEEEecCCCcEEE
Q 016224 268 SLKGHSLAVVSLVVGANKLYSGSMDNSIRV 297 (393)
Q Consensus 268 ~~~~~~~~v~~l~~~~~~l~sg~~dg~i~i 297 (393)
.-......+.+++-....++....++.+.+
T Consensus 535 ~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 535 PSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred CCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 111135567777777666777777775544
No 403
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=1.9 Score=41.04 Aligned_cols=132 Identities=13% Similarity=0.153 Sum_probs=89.1
Q ss_pred ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-------EEEEEeCCCcEEEEECCCCe--EEEEE-----ec
Q 016224 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-------KLYSGSKDETVRVWDCASGQ--CAGVI-----NL 190 (393)
Q Consensus 125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-------~l~s~s~dg~v~iwd~~~~~--~~~~~-----~~ 190 (393)
+.....|+--|++.| +.+.+.+-|.. |.-+.+.|+.+ .-+.|-.|..|.-||.+-.. .+... ..
T Consensus 352 ~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred CCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 556677888899999 89999987877 77777777543 22345668899999986322 12111 22
Q ss_pred CCceEEEE--eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEecc
Q 016224 191 GGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 191 ~~~~~~~~--~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~ 258 (393)
.....|+. .+|.+++++.+|.|++||--..... .+.+...+|..+..+.+ ..+.|+.+..+.+.++.-
T Consensus 430 k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred ccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 23344444 3566666679999999998333322 56777889999988777 555566677787777654
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.37 E-value=6.7 Score=37.06 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=46.7
Q ss_pred CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE----cC---------------C--E
Q 016224 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV----GA---------------N--K 285 (393)
Q Consensus 229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~----~~---------------~--~ 285 (393)
...+.++..+|. +.++...-|.|.++|+... ..++..++....-..+-. .. . +
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARG----IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 345677888887 6666667799999999887 344444443332221110 00 0 1
Q ss_pred EEEecCCCcEEEeeCCCcceeeEec
Q 016224 286 LYSGSMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 286 l~sg~~dg~i~iwd~~~~~~~~~~~ 310 (393)
++-+-.-|.|.||.++++..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 3334456777777777777766654
No 405
>PLN02153 epithiospecifier protein
Probab=92.92 E-value=7.6 Score=35.80 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=68.4
Q ss_pred eCCCEEEEE-cC-----CeEEEEECCCCceeeecC------C-CCcEEEEEEeCC-EEEEEeCC-----------CcEEE
Q 016224 199 SEGPWIFIG-VT-----NFVKAWNTQTNTDLSLSG------P-VGQVYAMAVGND-LLFAGTQD-----------GAILA 253 (393)
Q Consensus 199 ~~~~~l~~~-~~-----~~i~v~d~~~~~~~~~~~------~-~~~v~~l~~~~~-~l~~~~~d-----------g~I~v 253 (393)
.++++++.| .+ +.+.+||+.+.+-..+.. . ...-.+++...+ +++.|+.+ ..|.+
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 355555554 21 367889988766443221 1 111223344444 66666643 24677
Q ss_pred EEeccCCccccCceeec---CceeeEEEEEEcCCEEEEecCC-------------CcEEEeeCCCcceeeEe-----ccC
Q 016224 254 WKFNVTTNCFEPAASLK---GHSLAVVSLVVGANKLYSGSMD-------------NSIRVWNLETLQCIQTL-----TEH 312 (393)
Q Consensus 254 wd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~l~sg~~d-------------g~i~iwd~~~~~~~~~~-----~~~ 312 (393)
||+.+.. +..+.... ..........+++++++.++.+ ..|.+||+.+.+-...- ...
T Consensus 164 yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 164 YNIADGK--WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EECCCCe--EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 7776542 22211111 1111112334566655555432 46888998875433211 111
Q ss_pred ccceEEEEEcCCEEEEEeCC--------------CcEEEEEcCCC
Q 016224 313 TSVVMSLLCWDQFLLSCSLD--------------KTIKVWFATDS 343 (393)
Q Consensus 313 ~~~v~~l~~~~~~l~s~s~d--------------g~i~iwd~~~~ 343 (393)
......+.+.+.+++.|+.. ..|..+|+.+.
T Consensus 242 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 12223344446667777742 25677777543
No 406
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.71 E-value=0.65 Score=27.99 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.4
Q ss_pred CCEEEEEecCCC---CEEEEEeCCCcEEEEECCCC
Q 016224 151 KVVSGITLPSGS---DKLYSGSKDETVRVWDCASG 182 (393)
Q Consensus 151 ~~I~~i~~s~~~---~~l~s~s~dg~v~iwd~~~~ 182 (393)
++|.++.|+|+. ++|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999743 58888888899999999853
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.06 E-value=6.4 Score=39.22 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=61.9
Q ss_pred EEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEc----CCEEEEEeCCCcEEEEEcC-----CC----cceEEEE
Q 016224 285 KLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW----DQFLLSCSLDKTIKVWFAT-----DS----GNLEVTY 350 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~-----~~----~~~~~~~ 350 (393)
..++-+....+.|||.+.+....+-. ...+.|..+.|. ++.+++.+....|.+|.-. .. ..+..+.
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 33344455689999999877544433 357789999987 6789999999999998532 11 1222221
Q ss_pred e-ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 351 T-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 351 ~-~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
. .....++.+.+|.+++. |+.|+ .+.+.|++
T Consensus 123 i~~~T~h~Igds~Wl~~G~----LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGT----LVVGS-GNQLFVFD 154 (631)
T ss_pred eecCCCCCccceeEecCCe----EEEEe-CCEEEEEC
Confidence 1 11224577888887754 55554 35777776
No 408
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.04 E-value=10 Score=35.34 Aligned_cols=185 Identities=17% Similarity=0.099 Sum_probs=105.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCC--c---eEEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCC-CcEEEE
Q 016224 163 DKLYSGSKDETVRVWDCASGQCAGVINLGG--E---VGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPV-GQVYAM 235 (393)
Q Consensus 163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~-~~v~~l 235 (393)
..++.+..+|.|.-.|.++++.+....... . ......+|++++...++.+..+|..+++.. ...... ..+..-
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 345566788888888998888765444432 1 112234777777778888999999888776 333333 111111
Q ss_pred EEeCC-EEEEEeCCCcEEEEEeccCCccccCce----eecCceeeEEEEEEcCCEEEEecC--CCcEEEeeCCCcceeeE
Q 016224 236 AVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA----SLKGHSLAVVSLVVGANKLYSGSM--DNSIRVWNLETLQCIQT 308 (393)
Q Consensus 236 ~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~ 308 (393)
.+-.+ .++..+.++.+...|..++...++... ........+ .....++.+.. ++.+.-.|.++++....
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----IASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----eecceEEEecCCCcceEEEEEccCCcEeee
Confidence 22223 555555788888888777654322111 111111111 33445555555 66788888888887766
Q ss_pred eccCc----cce--E-EE----EEcCCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224 309 LTEHT----SVV--M-SL----LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351 (393)
Q Consensus 309 ~~~~~----~~v--~-~l----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 351 (393)
.+.+. ..+ . .+ ...+.-+..++.++.+...|..+++.+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 43211 111 0 11 01133456777788888888887776655554
No 409
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.29 E-value=12 Score=34.65 Aligned_cols=215 Identities=13% Similarity=0.042 Sum_probs=106.1
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEEec--CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecC
Q 016224 159 PSGSDKLYSG---------SKDETVRVWDCASGQCAGVINL--GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227 (393)
Q Consensus 159 s~~~~~l~s~---------s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~ 227 (393)
|||+++++.. +..+.+.|+|+++++....... ......+.++++.++...++.|.+++..++....+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence 5677766653 2246789999999876554433 3445667789999999999999999988876553322
Q ss_pred CC------------------CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEE
Q 016224 228 PV------------------GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL 286 (393)
Q Consensus 228 ~~------------------~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l 286 (393)
.. +.-..+-|+|+ +++.-..+..|..+.+-....... .-..+..+..-
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP---- 149 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP---- 149 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE------
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC----
Confidence 11 12345778887 334444455555554433211000 00122223221
Q ss_pred EEecCCC--cEEEeeCCCcceee--Ee---ccCccceEEEEEc--CCEEEEE--eCCC---cEEEEEcCCCcceEEEEee
Q 016224 287 YSGSMDN--SIRVWNLETLQCIQ--TL---TEHTSVVMSLLCW--DQFLLSC--SLDK---TIKVWFATDSGNLEVTYTH 352 (393)
Q Consensus 287 ~sg~~dg--~i~iwd~~~~~~~~--~~---~~~~~~v~~l~~~--~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~~~ 352 (393)
..|...- .+.|+|+.+++... .. ......+..+.|. +..|+.. ..+. .+.++|..++.........
T Consensus 150 k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 150 KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence 0111112 35667887776532 11 2344567788886 3323332 3332 3666777665543333222
Q ss_pred cCCccE---EEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 353 NEEHGV---LALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 353 ~~~~~v---~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
....+ ....+. ...+..+|.....||--+||-
T Consensus 230 -~~~Wv~~~~~~~~~-~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 230 -SDGWVDVYDPPHFL-GPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp -SSSSSSSSSEEEE--TTTSSEEEEEEETTSSEEEEE
T ss_pred -CCcceeeecccccc-cCCCCEEEEEEEcCCCcEEEE
Confidence 11111 123332 122334666666777654443
No 410
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.20 E-value=2.2 Score=42.32 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=47.1
Q ss_pred ecCcEEEecCCCeEEEEECCC----CcEEEEE-ecCC--------------------cCCEEEEEecC----CCCEEEEE
Q 016224 118 VQGNCMYGEKCKFLHSWTVGD----GFKLLTQ-LEGH--------------------QKVVSGITLPS----GSDKLYSG 168 (393)
Q Consensus 118 ~~~~~~~g~~dg~i~vwd~~~----~~~~~~~-l~~h--------------------~~~I~~i~~s~----~~~~l~s~ 168 (393)
++..++.+..||.+....... +...... +..+ ...+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566777888888887776553 2111111 1111 23556667766 77899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecC
Q 016224 169 SKDETVRVWDCASGQCAGVINLG 191 (393)
Q Consensus 169 s~dg~v~iwd~~~~~~~~~~~~~ 191 (393)
+.|+++|+||+.+++++.+....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999998877554
No 411
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.11 E-value=9.9 Score=36.24 Aligned_cols=169 Identities=15% Similarity=0.038 Sum_probs=88.2
Q ss_pred eEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcE--EEEEeccCCccccCceeecCceeeEEEEEEcCCE
Q 016224 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAI--LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK 285 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I--~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 285 (393)
.+.++++.+++........+.-..-+|+|+ ++++...||.. +++|+..... ..+....+... -.+++.+|+.
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~Lt~~~gi~~-~Ps~spdG~~ 295 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PRLTNGFGINT-SPSWSPDGSK 295 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--eecccCCcccc-CccCCCCCCE
Confidence 689999998887655555556667788887 67777778875 4555555431 11222222222 3455667776
Q ss_pred EEE-ecCCC--cEEEeeCCCcceeeEec--cCccceEEEEEcCCEEEEEeC-CCc--EEEEEcCCCcceEEEEeecC---
Q 016224 286 LYS-GSMDN--SIRVWNLETLQCIQTLT--EHTSVVMSLLCWDQFLLSCSL-DKT--IKVWFATDSGNLEVTYTHNE--- 354 (393)
Q Consensus 286 l~s-g~~dg--~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~--- 354 (393)
++- .+..| .|.+.|++.... ..+. ........+..++++|+..+. +|. |.+.|+.++.....+.....
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ 374 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNES 374 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCC
Confidence 554 44445 466666665543 3332 222223333344777666554 354 66666665554333222111
Q ss_pred ---CccEEEEEeeeCCCCCcEEEEEeCCCeEE
Q 016224 355 ---EHGVLALCGMPDSEGKPVLLCSCNDNSVR 383 (393)
Q Consensus 355 ---~~~v~~~~~~~~~~~~~~l~s~s~dg~I~ 383 (393)
...-..+.+......+..|...+.++.+.
T Consensus 375 ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~ 406 (425)
T COG0823 375 PSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVS 406 (425)
T ss_pred CCcCCCCceEEEeccCCCCceEEEeeccceeE
Confidence 01122233333333444666666666655
No 412
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.99 E-value=11 Score=35.87 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=29.7
Q ss_pred ceEEeeEecCcEEEecCCCeEEEEECC-------CCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224 111 DILCRNWVQGNCMYGEKCKFLHSWTVG-------DGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180 (393)
Q Consensus 111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~-------~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~ 180 (393)
...+.-+...+.+....|..++||+.. ++ .....+ .++...+.++ ++.....|.|+.|+--
T Consensus 28 ~~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~-~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 28 PCSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDG-SDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESI 96 (422)
T ss_dssp S-EEEEE-TTSEEEEEETTEEEEEE--SS--GG--E-EEEE-----------SE--------EEEE-TT-EEEEES-T
T ss_pred ceEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcc-cccceecCCCCCCCceE--------EEEEcCCCCEEecccc
Confidence 455566666688888889999999983 33 333334 4445555444 3445567888888743
No 413
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.96 E-value=6.1 Score=30.60 Aligned_cols=101 Identities=10% Similarity=0.139 Sum_probs=65.9
Q ss_pred cEEEecCCCeEEEEECCCC-------cEEEEEecCCcCCEEEEEecC-----CCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224 121 NCMYGEKCKFLHSWTVGDG-------FKLLTQLEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQCAGVI 188 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~-------~~~~~~l~~h~~~I~~i~~s~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 188 (393)
.+..++..|+|.|.+.... ...++.|. -...|++|+--+ +.+.|+.|+. ..|..||++...-+..-
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 3456777888888875532 12334444 446777776532 3456777665 58999999988766655
Q ss_pred ecCCceEEEEe------CCCEEEEEcCCeEEEEECCCCcee
Q 016224 189 NLGGEVGCMIS------EGPWIFIGVTNFVKAWNTQTNTDL 223 (393)
Q Consensus 189 ~~~~~~~~~~~------~~~~l~~~~~~~i~v~d~~~~~~~ 223 (393)
..+..+.++.. +..++++|..-.|.-||.+..+.+
T Consensus 90 e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 90 EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 55555555432 577888888888888887766544
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=18 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=21.4
Q ss_pred cEEEEEEeCC-----EEEEEeCCCcEEEEEeccCC
Q 016224 231 QVYAMAVGND-----LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 231 ~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~ 260 (393)
.+...+|+|+ .|..-+.|..|++||+...+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 4555667665 67777788888888887654
No 415
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.21 E-value=28 Score=37.04 Aligned_cols=146 Identities=17% Similarity=0.134 Sum_probs=89.7
Q ss_pred EEEEEeC---------CCcEEEEEeccCCcc-------ccCc-eeecCceeeEEEEEEcCCEEEEecCCCcEEEeeC-CC
Q 016224 241 LLFAGTQ---------DGAILAWKFNVTTNC-------FEPA-ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL-ET 302 (393)
Q Consensus 241 ~l~~~~~---------dg~I~vwd~~~~~~~-------~~~~-~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~-~~ 302 (393)
+|++|+. -|.+.++|+-.-.+. .+.. ...+...++|.+++--..+|+++. ..+|.||++ +.
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRD 1126 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccC
Confidence 7777753 488999998551110 0111 112335667777765555666654 457999999 44
Q ss_pred cceee-EeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224 303 LQCIQ-TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380 (393)
Q Consensus 303 ~~~~~-~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg 380 (393)
...+- .|..-.-.+.++..-.++|+.|.--..|.+.-..+.. .+..+......-.+.+..|.-++. ...++++..|+
T Consensus 1127 ~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~-~L~flvsDa~r 1205 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS-NLSFLVSDADR 1205 (1366)
T ss_pred CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCC-eeEEEEEcCCC
Confidence 44332 2222233445555557888888887888877664433 333334444456688888988764 34788899999
Q ss_pred eEEEEeCC
Q 016224 381 SVRFYDLP 388 (393)
Q Consensus 381 ~I~iwd~~ 388 (393)
.|++|-..
T Consensus 1206 Ni~vy~Y~ 1213 (1366)
T KOG1896|consen 1206 NIHVYMYA 1213 (1366)
T ss_pred cEEEEEeC
Confidence 99988653
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.14 E-value=15 Score=34.71 Aligned_cols=144 Identities=11% Similarity=0.066 Sum_probs=66.5
Q ss_pred EEEEEe-CCCcEEEEEeccCCccccCceeecC---c-----ee--eEEEEEEcCCEEEEec------CCCcEEEeeCCCc
Q 016224 241 LLFAGT-QDGAILAWKFNVTTNCFEPAASLKG---H-----SL--AVVSLVVGANKLYSGS------MDNSIRVWNLETL 303 (393)
Q Consensus 241 ~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~---~-----~~--~v~~l~~~~~~l~sg~------~dg~i~iwd~~~~ 303 (393)
+|++.+ ..+.|+|+|+.+.....++.+.+.. + .. .+.|+ .+++.++++- .-|-+.+.|-++.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-p~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-PDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-CCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 555555 7888999999865443333333321 1 11 11221 2466666632 2356888888888
Q ss_pred ceeeEeccCccc---eEEEEEc--CCEEEEEe--------------------CCCcEEEEEcCCCcceEEEEeecCCccE
Q 016224 304 QCIQTLTEHTSV---VMSLLCW--DQFLLSCS--------------------LDKTIKVWFATDSGNLEVTYTHNEEHGV 358 (393)
Q Consensus 304 ~~~~~~~~~~~~---v~~l~~~--~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 358 (393)
+.+..+...... -..+-+. .+.++|.. ...++.+||+.+.+.++.+.-.....-.
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 887777643321 1333333 23455543 2467999999988888777765555557
Q ss_pred EEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224 359 LALCGMPDSEGKPVLLCSCNDNSVRFY 385 (393)
Q Consensus 359 ~~~~~~~~~~~~~~l~s~s~dg~I~iw 385 (393)
+.+.|..+.....=++.+.-..+|..|
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEE
Confidence 788888776544334444444455444
No 417
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=90.10 E-value=0.089 Score=28.26 Aligned_cols=23 Identities=30% Similarity=0.801 Sum_probs=16.4
Q ss_pred cceeeeecc-cccCC-CCCCccccc
Q 016224 35 QKVCNYWRA-GKCNR-FPCPYLHRE 57 (393)
Q Consensus 35 ~~~~~~~~~-~~~~~-~~~~~~~~~ 57 (393)
.+.|.+|.+ |.|.+ .-|+|.|.+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred cccChhhccCCccCCCCCcCccCCC
Confidence 468999999 99999 559999964
No 418
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.07 E-value=14 Score=39.43 Aligned_cols=104 Identities=8% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-----eEEEEeCCCEEEEEcCCeEEEEECCCCceeee
Q 016224 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-----VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225 (393)
Q Consensus 151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~ 225 (393)
.....++|+|...++|.+...|.|+++-...-+.......... +.......+...-.....+.+|........
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 3456688999999999999999999998654433322222111 111111222223334445555554332221
Q ss_pred cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224 226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 226 ~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~ 259 (393)
-....+++....+- . +.+ ..+.+++||..-.
T Consensus 114 -~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~ 146 (993)
T KOG1983|consen 114 -FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRH 146 (993)
T ss_pred -ecCCcceeccCCCCcch-hcc-cCceeeEeeechh
Confidence 11222333332222 4 555 8888888876543
No 419
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.00 E-value=18 Score=34.36 Aligned_cols=137 Identities=9% Similarity=0.102 Sum_probs=78.4
Q ss_pred CcEEEecCCCeEEEEECCCC-cE---EEEEecCCcCCEEEEEecC----CCCEEEEEeCCCcEEEEECCCC---------
Q 016224 120 GNCMYGEKCKFLHSWTVGDG-FK---LLTQLEGHQKVVSGITLPS----GSDKLYSGSKDETVRVWDCASG--------- 182 (393)
Q Consensus 120 ~~~~~g~~dg~i~vwd~~~~-~~---~~~~l~~h~~~I~~i~~s~----~~~~l~s~s~dg~v~iwd~~~~--------- 182 (393)
+.+++|+..|.++||+...+ ++ ++-+.+ -+.+|..|+.-. .....+..=.-..+.||.+...
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 57889999999999997643 12 222222 457888887632 2233333455677888877211
Q ss_pred -eEEEEEe--cCCceEEEE--e----C-CCEEEE-EcCCeEEEEECCCCceeeecCCCCcEEEEEEeC--CEEEEEeCCC
Q 016224 183 -QCAGVIN--LGGEVGCMI--S----E-GPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--DLLFAGTQDG 249 (393)
Q Consensus 183 -~~~~~~~--~~~~~~~~~--~----~-~~~l~~-~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg 249 (393)
+....+. .......+. + . ..++.+ +.||.+.+|+-+.-....+....--.-.+.|.+ |.|++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 1111122 222221121 1 2 234444 699999999987765433322222233455554 4889999898
Q ss_pred cEEEEEec
Q 016224 250 AILAWKFN 257 (393)
Q Consensus 250 ~I~vwd~~ 257 (393)
.|..|...
T Consensus 197 ~l~~Yky~ 204 (418)
T PF14727_consen 197 TLECYKYQ 204 (418)
T ss_pred eEEEecHH
Confidence 99988764
No 420
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.93 E-value=2.7 Score=36.03 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=49.0
Q ss_pred ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEE------ec-------CCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224 111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQ------LE-------GHQKVVSGITLPSGSDKLYSGSKDETVRVW 177 (393)
Q Consensus 111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~------l~-------~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw 177 (393)
++..+......+++-+.+|.+++||+.++...+.. +. .....|..+.++.+|.-|++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 55666666777888999999999999987222222 22 3556788888887777666654 4677888
Q ss_pred ECCCC
Q 016224 178 DCASG 182 (393)
Q Consensus 178 d~~~~ 182 (393)
+.+-+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 76543
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.52 E-value=2.5 Score=41.90 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=43.4
Q ss_pred eCCEEEEEeCCCcEEEEEecc---CCccccCc-----------eee----------cCceeeEEEEEE----cCCEEEEe
Q 016224 238 GNDLLFAGTQDGAILAWKFNV---TTNCFEPA-----------ASL----------KGHSLAVVSLVV----GANKLYSG 289 (393)
Q Consensus 238 ~~~~l~~~~~dg~I~vwd~~~---~~~~~~~~-----------~~~----------~~~~~~v~~l~~----~~~~l~sg 289 (393)
++..|+++..||.+....... ....+... ..+ .........+.. +..++++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566888889999998888765 11110000 000 011112233333 45689999
Q ss_pred cCCCcEEEeeCCCcceeeEec
Q 016224 290 SMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 290 ~~dg~i~iwd~~~~~~~~~~~ 310 (393)
+.|+++|+||+.+++++.+..
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999976653
No 422
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=19 Score=37.39 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=47.5
Q ss_pred ceE-EeeEecCcEEEecCCCeEEEEECCCCcE--EEEE------e--cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224 111 DIL-CRNWVQGNCMYGEKCKFLHSWTVGDGFK--LLTQ------L--EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC 179 (393)
Q Consensus 111 ~i~-c~~~~~~~~~~g~~dg~i~vwd~~~~~~--~~~~------l--~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~ 179 (393)
.+. |++-..+.+++|+.+|.+.+|.+..... .... + .-++.+|..|...+.-.++++ -.|+.|.++++
T Consensus 17 ~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l 95 (877)
T KOG2063|consen 17 EVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKL 95 (877)
T ss_pred ccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeec
Confidence 444 8888888999999999999998864300 0000 1 113577777777665555544 34667888887
Q ss_pred CCCeE
Q 016224 180 ASGQC 184 (393)
Q Consensus 180 ~~~~~ 184 (393)
.+-+.
T Consensus 96 ~~~~~ 100 (877)
T KOG2063|consen 96 PELEP 100 (877)
T ss_pred Ccccc
Confidence 66544
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.33 E-value=3.9 Score=38.59 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=42.5
Q ss_pred EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce
Q 016224 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV 194 (393)
Q Consensus 142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 194 (393)
....|......+.+|+.+|++++.|+...=|.|.|+|+.++..++..+.-...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 34455556677999999999998888888899999999999888877755443
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=27 Score=35.20 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=86.9
Q ss_pred CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe------cCCceEEEEeC
Q 016224 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------LGGEVGCMISE 200 (393)
Q Consensus 127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~~~~~~~~ 200 (393)
.--.|+|++.. | +++..+.-....+..+.|+.+. .|+....||++.+|++. |+.+.... ...-..+....
T Consensus 62 a~~~I~If~~s-G-~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 62 ARPYIRIFNIS-G-QLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred cceeEEEEecc-c-cchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec
Confidence 34468888864 4 5555554444488899998765 56667899999999985 33333321 12223344444
Q ss_pred CCEEEEEcCCe-EEEEECCCCceeeecC---CCCcEEEEEEe-CC-----EEEEEeCCCcEEEEEeccCCccccCceeec
Q 016224 201 GPWIFIGVTNF-VKAWNTQTNTDLSLSG---PVGQVYAMAVG-ND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLK 270 (393)
Q Consensus 201 ~~~l~~~~~~~-i~v~d~~~~~~~~~~~---~~~~v~~l~~~-~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~ 270 (393)
+.+.+...++. +.+-+........+.. ....-.+.+.. +. ++.+.-..+ ..++-..... .....+.
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~ 213 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALS 213 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccC
Confidence 44444444443 3333333322222221 11111232222 21 111111111 1112122111 1111122
Q ss_pred CceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224 271 GHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT 310 (393)
Q Consensus 271 ~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 310 (393)
.....+..++. +..+|+--..+|.|.+-+....+..-++.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 12234444444 45688888899999999888777666665
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.01 E-value=10 Score=39.86 Aligned_cols=136 Identities=14% Similarity=0.091 Sum_probs=79.5
Q ss_pred cEEEEEEeCC----EEEEEeCCCcEEEEEeccCCccc-cCceeecC------ceeeEEEEEEcCC---EEEEecCCCcEE
Q 016224 231 QVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCF-EPAASLKG------HSLAVVSLVVGAN---KLYSGSMDNSIR 296 (393)
Q Consensus 231 ~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~~~~~-~~~~~~~~------~~~~v~~l~~~~~---~l~sg~~dg~i~ 296 (393)
.+..+...+| .++..+.+-.|..||++.-.... +....+.. ......++.|++. ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444444444 33334445578899987643211 11111222 2233456667754 477778899999
Q ss_pred EeeCCCcce-eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe--ecCCccEEEEEeeeCCC
Q 016224 297 VWNLETLQC-IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT--HNEEHGVLALCGMPDSE 368 (393)
Q Consensus 297 iwd~~~~~~-~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 368 (393)
+..+..... +.++ .-....++++|+ |+.++.|-..|++.-|... .+....+.. ......|++++|.....
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEeccee
Confidence 888754322 2222 234567899999 7799999999999988663 222222221 11235789999987654
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.87 E-value=14 Score=31.67 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=56.0
Q ss_pred EEEEEcCC---EEEEecCCCcEEEee--CCCcce-----eeEecc---Ccc---ceEEEEEcCCEEEEEeCCCcEEEEEc
Q 016224 277 VSLVVGAN---KLYSGSMDNSIRVWN--LETLQC-----IQTLTE---HTS---VVMSLLCWDQFLLSCSLDKTIKVWFA 340 (393)
Q Consensus 277 ~~l~~~~~---~l~sg~~dg~i~iwd--~~~~~~-----~~~~~~---~~~---~v~~l~~~~~~l~s~s~dg~i~iwd~ 340 (393)
..++|+.+ +.++-+.+-.|.-|| ..+|.. +..++. ... .-.++.-+|.+.++.-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 45667632 456667777887777 555432 333321 111 12444445788888888999999999
Q ss_pred CCCcceEEEEeecCCccEEEEEeee
Q 016224 341 TDSGNLEVTYTHNEEHGVLALCGMP 365 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~v~~~~~~~ 365 (393)
.+++.+..+.-... .+++++|--
T Consensus 241 ~tGK~L~eiklPt~--qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTP--QITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCC--ceEEEEecC
Confidence 99998887776543 478888753
No 427
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.63 E-value=13 Score=35.46 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 358 v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
+.++..-+.. ++|++.+.+|.|.+|++.
T Consensus 192 I~~v~~d~~r---~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 192 IVQVAVDPSR---RLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEEETTT---TEEEEEESSE-EEEEEE-
T ss_pred eeeEEecCCc---CEEEEEeCCCcEEEEEEe
Confidence 6666554433 489999999999999996
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=23 Score=33.59 Aligned_cols=139 Identities=8% Similarity=-0.001 Sum_probs=79.8
Q ss_pred cEEEecCCCeEEEEECCC--CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE----ecCCc-
Q 016224 121 NCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----NLGGE- 193 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~--~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~- 193 (393)
..+++...|.+.-|-+.. ..-++..-...+++|.+|.||+|.+.||.--.|.+|.+.+....+..... +.+..
T Consensus 35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN 114 (657)
T ss_pred ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence 344444455555555431 11223333345679999999999999999999999999998433322221 11221
Q ss_pred e-EEEEeCCCEEEEEcCCeEEEEECCC--CceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccC
Q 016224 194 V-GCMISEGPWIFIGVTNFVKAWNTQT--NTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 194 ~-~~~~~~~~~l~~~~~~~i~v~d~~~--~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~ 259 (393)
+ ..+..++.-++.-.+..+-+|.... ........+.-.|....|.++ +|+++-..+++.=+-++++
T Consensus 115 IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 115 ILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 2 3334455555555555555555443 333355667778888888887 4444435555544545443
No 429
>PLN02193 nitrile-specifier protein
Probab=87.84 E-value=28 Score=33.82 Aligned_cols=132 Identities=8% Similarity=0.066 Sum_probs=64.2
Q ss_pred eEEEEECCCCceeeecC---CCC----cEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCccccCceee---cCceee
Q 016224 211 FVKAWNTQTNTDLSLSG---PVG----QVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASL---KGHSLA 275 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~~~---~~~----~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~---~~~~~~ 275 (393)
.+.+||+.+.+-..+.. ... ....+.+...+++.|+.+ ..+.+||+.+.+ +..+... ......
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE--WKLLTPVEEGPTPRSF 271 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE--EEEcCcCCCCCCCccc
Confidence 47788888766443221 111 112223333466666654 347777776542 2222221 011111
Q ss_pred EEEEEEcCCEEEEecCCC-----cEEEeeCCCcceeeEe-----ccCccceEEEEEcCCEEEEEeCC----CcEEEEEcC
Q 016224 276 VVSLVVGANKLYSGSMDN-----SIRVWNLETLQCIQTL-----TEHTSVVMSLLCWDQFLLSCSLD----KTIKVWFAT 341 (393)
Q Consensus 276 v~~l~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~l~s~s~d----g~i~iwd~~ 341 (393)
......++.+++.|+.++ .+..||+.+.+-...- .........+.+.+++++.++.+ ..+.+||+.
T Consensus 272 h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 272 HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECC
Confidence 122334555666676543 4677888765432110 01111122334457777777655 458899987
Q ss_pred CCc
Q 016224 342 DSG 344 (393)
Q Consensus 342 ~~~ 344 (393)
+.+
T Consensus 352 t~~ 354 (470)
T PLN02193 352 QDK 354 (470)
T ss_pred CCE
Confidence 543
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.36 E-value=12 Score=35.76 Aligned_cols=140 Identities=8% Similarity=0.059 Sum_probs=78.8
Q ss_pred CCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---------EEEEEeCCCcEEEEEeccCCccccCc--
Q 016224 200 EGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---------LLFAGTQDGAILAWKFNVTTNCFEPA-- 266 (393)
Q Consensus 200 ~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~~~dg~I~vwd~~~~~~~~~~~-- 266 (393)
+..+|+.. ....++-.|++.++.+........| -+.|.|. .-++|-.+..|.-.|.+.........
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 44455543 4457777788888877433333334 5566664 34566667777777766543211111
Q ss_pred eeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224 267 ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 267 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~ 341 (393)
....+....-....-...++++++..|-|++||--..+....+.+-...|..+... |+++++.+ ...+.+-|++
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 01111111112223346799999999999999965444444555556666655554 66655544 3466666654
No 431
>PLN02153 epithiospecifier protein
Probab=87.31 E-value=24 Score=32.49 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=32.4
Q ss_pred EcCCEEEEecCC-----------CcEEEeeCCCcceee--Eec---cCccceEEEEEcCCEEEEEeCC------------
Q 016224 281 VGANKLYSGSMD-----------NSIRVWNLETLQCIQ--TLT---EHTSVVMSLLCWDQFLLSCSLD------------ 332 (393)
Q Consensus 281 ~~~~~l~sg~~d-----------g~i~iwd~~~~~~~~--~~~---~~~~~v~~l~~~~~~l~s~s~d------------ 332 (393)
.++.+++.|+.+ ..|.+||+.+.+-.. ... ..........+.+++++.++.+
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~ 215 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYE 215 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCcccee
Confidence 345566666643 247788887644321 110 1111122334456655555432
Q ss_pred -CcEEEEEcCCCc
Q 016224 333 -KTIKVWFATDSG 344 (393)
Q Consensus 333 -g~i~iwd~~~~~ 344 (393)
..|.+||+.+.+
T Consensus 216 ~~~v~~yd~~~~~ 228 (341)
T PLN02153 216 SNAVQFFDPASGK 228 (341)
T ss_pred cCceEEEEcCCCc
Confidence 458888886543
No 432
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=86.64 E-value=5.1 Score=40.49 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=75.4
Q ss_pred cEEEecCCCeEEEEECCCC--cEEEE-EecCCcCCEEEEEecCCCCEEEEEeCCCcEEE--------EECCCCeEEEEEe
Q 016224 121 NCMYGEKCKFLHSWTVGDG--FKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDETVRV--------WDCASGQCAGVIN 189 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~--~~~~~-~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i--------wd~~~~~~~~~~~ 189 (393)
.+.+|+.++.|.++.-..+ .+... ........+.++.+++. .+..|.-||++-. ||.+-..+ ...
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~--~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNIS--IPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCccc--ccc
Confidence 4556888888888875522 12222 22233466777777654 2444555555544 44331111 112
Q ss_pred cCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCCEEEEEeCCC-cEEEEE
Q 016224 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGNDLLFAGTQDG-AILAWK 255 (393)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~dg-~I~vwd 255 (393)
...++........++.++.+|.|.++...+.... ....+...|++|.+..+-+..+-..| .++.++
T Consensus 625 g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfh 695 (925)
T KOG3522|consen 625 GSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFH 695 (925)
T ss_pred CCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEec
Confidence 2234455556677888899999999998775443 34456778999999888333333333 444443
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.29 E-value=31 Score=32.72 Aligned_cols=132 Identities=11% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCeEEEEECCCCcEEEEEecCCc---CCEEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCCeE
Q 016224 128 CKFLHSWTVGDGFKLLTQLEGHQ---KVVSGITLPSGSDKLYSGSK--------------------DETVRVWDCASGQC 184 (393)
Q Consensus 128 dg~i~vwd~~~~~~~~~~l~~h~---~~I~~i~~s~~~~~l~s~s~--------------------dg~v~iwd~~~~~~ 184 (393)
-|-+.+.|-++- +......... .--..+-+.|..+.++|... ..++.+||+.+.+.
T Consensus 156 ~Ggf~llD~~tf-~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 156 PGGFVLLDGETF-EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp --EEEEE-TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CCcEEEEcCccc-cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 345777776653 6666665432 33456677888888988764 25899999999999
Q ss_pred EEEEecCCceEE-----EE--eCCCEEEEE--cCCeEEEEEC-CCCce-----eeecC-----------------CCCcE
Q 016224 185 AGVINLGGEVGC-----MI--SEGPWIFIG--VTNFVKAWNT-QTNTD-----LSLSG-----------------PVGQV 232 (393)
Q Consensus 185 ~~~~~~~~~~~~-----~~--~~~~~l~~~--~~~~i~v~d~-~~~~~-----~~~~~-----------------~~~~v 232 (393)
++++..+..-.. +. ++...-+++ ...+|..|-- ..++- +.+.. ...-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 999998754221 11 234444443 4445544433 33331 11111 03457
Q ss_pred EEEEEeCC---EEEEEeCCCcEEEEEeccCC
Q 016224 233 YAMAVGND---LLFAGTQDGAILAWKFNVTT 260 (393)
Q Consensus 233 ~~l~~~~~---~l~~~~~dg~I~vwd~~~~~ 260 (393)
+.|.++-| +.++.=.+|.|+.||+....
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 88888877 44555579999999998754
No 434
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.27 E-value=53 Score=35.45 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=27.4
Q ss_pred cCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC
Q 016224 311 EHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS 343 (393)
Q Consensus 311 ~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~ 343 (393)
.+..+|..+..+. +.+.+-+..++|.+||+...
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 5677899999884 47888899999999999763
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.25 E-value=32 Score=34.43 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCceEEEE----eCCC-EEEEEcCCeEEEEECCCC---
Q 016224 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL--GGEVGCMI----SEGP-WIFIGVTNFVKAWNTQTN--- 220 (393)
Q Consensus 151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~----~~~~-~l~~~~~~~i~v~d~~~~--- 220 (393)
...+-+.-+.-++.-++-+...++.|||...+.....-.. ...+..+. ++++ ++++|..+.|.+|.-...
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 4444454555444333334445899999998875544443 45554432 3444 566789999988864211
Q ss_pred ---------ceeeecCCC-CcEEEEEEeCC-EEEEEeCCCcEEEEEe
Q 016224 221 ---------TDLSLSGPV-GQVYAMAVGND-LLFAGTQDGAILAWKF 256 (393)
Q Consensus 221 ---------~~~~~~~~~-~~v~~l~~~~~-~l~~~~~dg~I~vwd~ 256 (393)
+.+.+..+. .+|.+..|.++ .|++|+ +..+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 112333443 57888899888 555554 567888764
No 436
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.25 E-value=28 Score=32.25 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=41.7
Q ss_pred CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG 186 (393)
Q Consensus 128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 186 (393)
.+.+.|+|+.++ + +..+......+....|+|+|+.|+-.. ++.|.+++..+++..+
T Consensus 22 ~~~y~i~d~~~~-~-~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 22 KGDYYIYDIETG-E-ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEEEETTTT-E-EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred ceeEEEEecCCC-c-eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 457899999987 3 334444467888999999999999886 5789999988775544
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.06 E-value=25 Score=36.05 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=27.0
Q ss_pred CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 355 ~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
...+..+.|+|.+..+..|+.-.+|+++|+||+..
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 34577788888876666788888888888888854
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.87 E-value=9.3 Score=32.74 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=16.9
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224 158 LPSGSDKLYSGSKDETVRVWDCASGQCA 185 (393)
Q Consensus 158 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (393)
+..++++|+....+|.+++||+.+++.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 3445666666666666666666665543
No 439
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=15 Score=39.24 Aligned_cols=138 Identities=13% Similarity=0.256 Sum_probs=85.9
Q ss_pred cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEe--------cCCCCEEEEEeCCCcEEEEECCCCe-------EE
Q 016224 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL--------PSGSDKLYSGSKDETVRVWDCASGQ-------CA 185 (393)
Q Consensus 121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~--------s~~~~~l~s~s~dg~v~iwd~~~~~-------~~ 185 (393)
+.+--+.|+.+.+|+.+++ .....+.+-+..|..+.+ -|.=++|+..+.--.|.|+-+.-.+ ..
T Consensus 91 ~RaWiTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 91 GRAWITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred cceEEEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc
Confidence 4445778999999999986 566677777777777765 2222444444444456666432111 11
Q ss_pred EEEe--c-CCceEEEE--eCCCEEEEEcCCeEEE--EECCCC-------c--------------eeeec-CCCCcEEEEE
Q 016224 186 GVIN--L-GGEVGCMI--SEGPWIFIGVTNFVKA--WNTQTN-------T--------------DLSLS-GPVGQVYAMA 236 (393)
Q Consensus 186 ~~~~--~-~~~~~~~~--~~~~~l~~~~~~~i~v--~d~~~~-------~--------------~~~~~-~~~~~v~~l~ 236 (393)
..+. . +..+.++. .+|+++++|.|+.|+- |....+ + ...+. .+.++|..|+
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred cceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 1122 1 23344444 4889999998885542 222211 0 11223 4577899999
Q ss_pred EeCC--EEEEEeCCCcEEEEEeccC
Q 016224 237 VGND--LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 237 ~~~~--~l~~~~~dg~I~vwd~~~~ 259 (393)
++.. .+.+-+..|+|.+||+...
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eccccceeeeeccCceEEEEEccCC
Confidence 9876 8899999999999999873
No 440
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.68 E-value=31 Score=32.27 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=20.6
Q ss_pred CeEEEEECCCCceeeecCCC---CcEEEEEEeCC-EEEEEeC
Q 016224 210 NFVKAWNTQTNTDLSLSGPV---GQVYAMAVGND-LLFAGTQ 247 (393)
Q Consensus 210 ~~i~v~d~~~~~~~~~~~~~---~~v~~l~~~~~-~l~~~~~ 247 (393)
..+.+||..+++-..+.... ..-.++....+ +++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 35889999887765332211 12234444445 5556553
No 441
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=85.53 E-value=38 Score=33.16 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=115.7
Q ss_pred CcEEEecCCCeEEEEECCCCcE--EEEEecCC-cCCEEEEEecCCC-CEEEEEeC--CCcEEEEECCCCeEEEEEecCCc
Q 016224 120 GNCMYGEKCKFLHSWTVGDGFK--LLTQLEGH-QKVVSGITLPSGS-DKLYSGSK--DETVRVWDCASGQCAGVINLGGE 193 (393)
Q Consensus 120 ~~~~~g~~dg~i~vwd~~~~~~--~~~~l~~h-~~~I~~i~~s~~~-~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~ 193 (393)
+.++.+..+|.++...+..... .+..+ +. ....+++.+-.++ .+|+.|+. |+.+.-|....-+.+..+..-++
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~P 301 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGP 301 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----S
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCC
Confidence 3577899999999887764311 12222 22 4555667765544 47777776 45566666555566666666566
Q ss_pred eEEEEe------CC-------CEEEEE---cCCeEEEEECCCCc---eeeecCC--CCcEEEEEEeC--C-EEEEEeCCC
Q 016224 194 VGCMIS------EG-------PWIFIG---VTNFVKAWNTQTNT---DLSLSGP--VGQVYAMAVGN--D-LLFAGTQDG 249 (393)
Q Consensus 194 ~~~~~~------~~-------~~l~~~---~~~~i~v~d~~~~~---~~~~~~~--~~~v~~l~~~~--~-~l~~~~~dg 249 (393)
+..+.- .. ++++++ .+|.+++..-.-+- ....... ...++.+.... + +|+.+..+.
T Consensus 302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~ 381 (504)
T PF10433_consen 302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNE 381 (504)
T ss_dssp EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSE
T ss_pred ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCc
Confidence 544431 11 444543 56688876432221 2211111 44555565543 3 666655544
Q ss_pred cEEEEEecc--CCccc-cC-ceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcCC
Q 016224 250 AILAWKFNV--TTNCF-EP-AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQ 324 (393)
Q Consensus 250 ~I~vwd~~~--~~~~~-~~-~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~ 324 (393)
-+++.+.. ..... +. ...+......+.+-...+++++=.+.. .|++.+....+....+.. ....|.+.+..+.
T Consensus 382 -T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~ 459 (504)
T PF10433_consen 382 -TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASINDP 459 (504)
T ss_dssp -EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEESSS
T ss_pred -eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEECCC
Confidence 44555541 11100 00 002222333444444445666655544 488898888777776643 4456677777788
Q ss_pred EEEEEeCCCcEEEEEcCCCcce
Q 016224 325 FLLSCSLDKTIKVWFATDSGNL 346 (393)
Q Consensus 325 ~l~s~s~dg~i~iwd~~~~~~~ 346 (393)
+++.+-.++.+.++.+......
T Consensus 460 ~v~v~~~~~~~~~~~~~~~~~~ 481 (504)
T PF10433_consen 460 QVLVALSGGELVYFELDDNKIS 481 (504)
T ss_dssp EEEEEE-TTEEEEEEEETTEEE
T ss_pred EEEEEEeCCcEEEEEEECCcee
Confidence 8888888999999988765543
No 442
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.52 E-value=29 Score=30.84 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=56.5
Q ss_pred EEEecCCC-CEEEEEeCCCc-EEEEECCCCeEEEEEecCCc-----eEEEEeCCCEEEEEc------CCeEEEEECCCCc
Q 016224 155 GITLPSGS-DKLYSGSKDET-VRVWDCASGQCAGVINLGGE-----VGCMISEGPWIFIGV------TNFVKAWNTQTNT 221 (393)
Q Consensus 155 ~i~~s~~~-~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~------~~~i~v~d~~~~~ 221 (393)
.|+|+|.. .-++.+-.-|+ ..++|....+...++..... -.++.+++.+|.+.. .|.|-+||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 46777754 34555555454 56889888877766654432 245668999999862 3589999998554
Q ss_pred ee--eecCCCCcEEEEEEeCC
Q 016224 222 DL--SLSGPVGQVYAMAVGND 240 (393)
Q Consensus 222 ~~--~~~~~~~~v~~l~~~~~ 240 (393)
.. .+..|.--...+.+.+|
T Consensus 152 qrvgE~~t~GiGpHev~lm~D 172 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMAD 172 (366)
T ss_pred ceecccccCCcCcceeEEecC
Confidence 33 55666666667777777
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.49 E-value=32 Score=31.35 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=34.4
Q ss_pred EEcCCEEEEecC-----CCcEEEeeCCCcce--eeEecc-CccceEEEEEcCCEEEEEeCCCc----EEEEEcCCC
Q 016224 280 VVGANKLYSGSM-----DNSIRVWNLETLQC--IQTLTE-HTSVVMSLLCWDQFLLSCSLDKT----IKVWFATDS 343 (393)
Q Consensus 280 ~~~~~~l~sg~~-----dg~i~iwd~~~~~~--~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~----i~iwd~~~~ 343 (393)
..++.+.+.|+. ...+..||+.+.+- +..+.. .......+...+++.+.|+.++. +.+||+.+.
T Consensus 121 ~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 121 YKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred EECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 345666666664 24688889876543 222221 11112233445677777776543 567887654
No 444
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.20 E-value=26 Score=32.68 Aligned_cols=133 Identities=11% Similarity=0.118 Sum_probs=62.7
Q ss_pred ecCCCe-EEEEECCCCcEEEEEecCCc--CCEEEEEecCCCCEEEEEe-----CCCcEEEEECCCCeEEEEEecCCceEE
Q 016224 125 GEKCKF-LHSWTVGDGFKLLTQLEGHQ--KVVSGITLPSGSDKLYSGS-----KDETVRVWDCASGQCAGVINLGGEVGC 196 (393)
Q Consensus 125 g~~dg~-i~vwd~~~~~~~~~~l~~h~--~~I~~i~~s~~~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~~~~~~ 196 (393)
|--+.. -+||-+.+.-.-.+.+..|. ..+..=-|.+||..|.--+ .+..|.-+|+.+++.......+.....
T Consensus 209 Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~ 288 (386)
T PF14583_consen 209 GPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHF 288 (386)
T ss_dssp S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEE
T ss_pred CCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeee
Confidence 444442 47776653323444444443 3344445789998766432 245677788888876655555544433
Q ss_pred EE-eCCCEEEEE-cCC----------------eEEEEECCCCceeeecCCCC-----------cEEEEEEeCC---EEEE
Q 016224 197 MI-SEGPWIFIG-VTN----------------FVKAWNTQTNTDLSLSGPVG-----------QVYAMAVGND---LLFA 244 (393)
Q Consensus 197 ~~-~~~~~l~~~-~~~----------------~i~v~d~~~~~~~~~~~~~~-----------~v~~l~~~~~---~l~~ 244 (393)
.. .++++++.. .|. .|++++++.+....+..|.. .-....|+|| .|++
T Consensus 289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~ 368 (386)
T PF14583_consen 289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR 368 (386)
T ss_dssp EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEE
T ss_pred EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE
Confidence 33 466666552 321 46678888776543333321 1245778888 7888
Q ss_pred EeCCCcEEEEEec
Q 016224 245 GTQDGAILAWKFN 257 (393)
Q Consensus 245 ~~~dg~I~vwd~~ 257 (393)
+...|...||=+.
T Consensus 369 Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 369 SDMEGPPAVYLVE 381 (386)
T ss_dssp E-TTSS-EEEEEE
T ss_pred CCCCCCccEEEEe
Confidence 8888888777544
No 445
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.70 E-value=41 Score=31.98 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=81.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe-----EEEEEecCCceEEEEe-------CCCEEEEEcCCeEEEEECCCCc-------
Q 016224 161 GSDKLYSGSKDETVRVWDCASGQ-----CAGVINLGGEVGCMIS-------EGPWIFIGVTNFVKAWNTQTNT------- 221 (393)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~v~d~~~~~------- 221 (393)
+...|++||..|.++||+..... .+-+.+...++..+.. ....|++-.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45789999999999999986543 4555566666655432 3456777788888888873211
Q ss_pred ee---eecCCC--CcEEEEEEe-------CCEEEEEeCCCcEEEEEeccCCccccCceeec--CceeeEEEEEEcCCEEE
Q 016224 222 DL---SLSGPV--GQVYAMAVG-------NDLLFAGTQDGAILAWKFNVTTNCFEPAASLK--GHSLAVVSLVVGANKLY 287 (393)
Q Consensus 222 ~~---~~~~~~--~~v~~l~~~-------~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~l~ 287 (393)
.. .+..|. .....++.. .+++.+-+-||.+.+|+-+.-.. ...+. -..+++ +....-+.|+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~~llPgPl-~Y~~~tDsfv 190 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPDFLLPGPL-CYCPRTDSFV 190 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCCCCCCcCe-EEeecCCEEE
Confidence 11 222222 223333332 24899999999999998655321 11111 122332 3334456788
Q ss_pred EecCCCcEEEeeC
Q 016224 288 SGSMDNSIRVWNL 300 (393)
Q Consensus 288 sg~~dg~i~iwd~ 300 (393)
+++.+..|.-|..
T Consensus 191 t~sss~~l~~Yky 203 (418)
T PF14727_consen 191 TASSSWTLECYKY 203 (418)
T ss_pred EecCceeEEEecH
Confidence 8888888887765
No 446
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.40 E-value=37 Score=31.25 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=39.8
Q ss_pred CeEEEEECCCCceeeecCCC---CcEEEEEE-eCCEEEEEeCC------CcEEEEEeccCCccccCceeecC-----ce-
Q 016224 210 NFVKAWNTQTNTDLSLSGPV---GQVYAMAV-GNDLLFAGTQD------GAILAWKFNVTTNCFEPAASLKG-----HS- 273 (393)
Q Consensus 210 ~~i~v~d~~~~~~~~~~~~~---~~v~~l~~-~~~~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~~~-----~~- 273 (393)
+.+.+||..+++-..+.... ..-.+++. ...+++.|+.+ ..+.++++......+.....+.. +.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 46889999887655332211 12223333 33466666543 12455666444333333333221 11
Q ss_pred -eeEEEEEEcCCEEEEecCC
Q 016224 274 -LAVVSLVVGANKLYSGSMD 292 (393)
Q Consensus 274 -~~v~~l~~~~~~l~sg~~d 292 (393)
........++..++.|+.+
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred ccEEeeeEECCEEEEeecCC
Confidence 1222344566677777653
No 447
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.23 E-value=40 Score=31.50 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred CcEEEEEeccCCccccCce----eecCceeeEEEEEE--c---CC-EEEEecCCCcEEEeeCC---Cc----ceeeEecc
Q 016224 249 GAILAWKFNVTTNCFEPAA----SLKGHSLAVVSLVV--G---AN-KLYSGSMDNSIRVWNLE---TL----QCIQTLTE 311 (393)
Q Consensus 249 g~I~vwd~~~~~~~~~~~~----~~~~~~~~v~~l~~--~---~~-~l~sg~~dg~i~iwd~~---~~----~~~~~~~~ 311 (393)
.+|++|.+......+..+. .+......++.++. + +. +++....+|.+..|-+. .+ +++++|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 4699998874322111111 01111123455554 2 33 57777888988888764 23 45777764
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc--ceEEEEe---ecCCccEEEEEeeeCCCCCcEEEE-EeCCCeEE
Q 016224 312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG--NLEVTYT---HNEEHGVLALCGMPDSEGKPVLLC-SCNDNSVR 383 (393)
Q Consensus 312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~s-~s~dg~I~ 383 (393)
.. .+-.+..+ ..+|+.+-++--|.-|+..... ....+.. ..-...+-.++.-....+.-||+. .-.+++..
T Consensus 207 ~s-Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 207 GS-QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp SS--EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred CC-cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 33 66677777 4589999998878777775322 1122211 111123555555443333335554 44588999
Q ss_pred EEeCCc
Q 016224 384 FYDLPS 389 (393)
Q Consensus 384 iwd~~s 389 (393)
||+...
T Consensus 286 Vy~r~~ 291 (381)
T PF02333_consen 286 VYDREG 291 (381)
T ss_dssp EEESST
T ss_pred EEecCC
Confidence 999753
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.22 E-value=27 Score=29.58 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=39.6
Q ss_pred CcEEEecCCCeEEEEECC-CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC
Q 016224 120 GNCMYGEKCKFLHSWTVG-DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK 170 (393)
Q Consensus 120 ~~~~~g~~dg~i~vwd~~-~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~ 170 (393)
+.++.+.....|.+|++. +..+++.++.- -+.|..|.++..|+||+|-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 677777888899999998 34466667763 388999999999999998643
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.08 E-value=45 Score=32.29 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=55.6
Q ss_pred eEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224 275 AVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYT 351 (393)
Q Consensus 275 ~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 351 (393)
.|..+.. .|..++..+.+|.+.++=.+..-.-..++.....|+|-.+. +..|++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft----------------------- 161 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT----------------------- 161 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-----------------------
Confidence 3444444 36678888888877766544433344444444444444333 222222
Q ss_pred ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390 (393)
Q Consensus 352 ~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~ 390 (393)
......+....|+|++-....|..-++|++||+|++.+-
T Consensus 162 ss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 162 SSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred cCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 223344667888888744457888888999999998754
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=15 Score=31.01 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=63.9
Q ss_pred EEEEeCC-EEEEEeC--CCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEE-ecCCCcEEEeeCCCcceeeEe
Q 016224 234 AMAVGND-LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYS-GSMDNSIRVWNLETLQCIQTL 309 (393)
Q Consensus 234 ~l~~~~~-~l~~~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~ 309 (393)
.+.+..+ ++.+.+. ...|++||+.+++..+.. .+......--.+.--+++++. .-.+|.-..+|.++.+++..+
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~--~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSE--KLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEe--ecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence 3444444 3444333 345888888876432111 111000000111222343333 335788889999998888777
Q ss_pred ccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224 310 TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352 (393)
Q Consensus 310 ~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 352 (393)
. -.+.-..++.++..|+.+....+++.-|.++......+...
T Consensus 128 ~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT 169 (262)
T COG3823 128 S-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVT 169 (262)
T ss_pred c-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEE
Confidence 5 34455777777777777777777888777665544444433
No 451
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.94 E-value=3.9 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=20.1
Q ss_pred CCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224 283 ANKLYSGSMDNSIRVWNLETLQCIQTL 309 (393)
Q Consensus 283 ~~~l~sg~~dg~i~iwd~~~~~~~~~~ 309 (393)
+..++.++.++.+..+|.++|+.+.++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446777788888888888888776543
No 452
>PRK10115 protease 2; Provisional
Probab=82.65 E-value=61 Score=33.23 Aligned_cols=238 Identities=9% Similarity=0.013 Sum_probs=110.3
Q ss_pred CCEEEEEecCCCCEEEEEeC-C----CcEEEEECCCCeEEEE-EecCCceEEEEeCCCEEEEE-cC------CeEEEEEC
Q 016224 151 KVVSGITLPSGSDKLYSGSK-D----ETVRVWDCASGQCAGV-INLGGEVGCMISEGPWIFIG-VT------NFVKAWNT 217 (393)
Q Consensus 151 ~~I~~i~~s~~~~~l~s~s~-d----g~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~------~~i~v~d~ 217 (393)
-.+..+.++||+++|+-+.. + -.|++-|+.+++.+.. +........+..+++.++.. .+ ..|..+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 45777889999998876533 2 3688999988863322 22222234555677655543 21 26788888
Q ss_pred CCCc--ee-eecCCCCcEE-EEEEeCC--EEEEEe---CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEE
Q 016224 218 QTNT--DL-SLSGPVGQVY-AMAVGND--LLFAGT---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYS 288 (393)
Q Consensus 218 ~~~~--~~-~~~~~~~~v~-~l~~~~~--~l~~~~---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s 288 (393)
.++. .. .+........ .+..+.+ +++..+ .++.+.+++...... .....+.........+...++.|+.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ly~ 284 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA--EPFVFLPRRKDHEYSLDHYQHRFYL 284 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC--CceEEEECCCCCEEEEEeCCCEEEE
Confidence 8772 22 2332222222 2222323 333322 345688888543221 1111111111112222222343333
Q ss_pred ecC----CCcEEEeeCCCcceeeEeccC-c-cceEEEEEcCCE-EEEEeCCCcEEEEEcCC-CcceEEEEeecCCccEEE
Q 016224 289 GSM----DNSIRVWNLETLQCIQTLTEH-T-SVVMSLLCWDQF-LLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHGVLA 360 (393)
Q Consensus 289 g~~----dg~i~iwd~~~~~~~~~~~~~-~-~~v~~l~~~~~~-l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~ 360 (393)
-+. ...|...++........+..+ . ..+..+.+.+++ +++...++.-+++-+.. ...+..+.. .....+..
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~ 363 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTW 363 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEee
Confidence 222 223444455421222334344 2 367778777665 45556677655554432 222332221 11111222
Q ss_pred EEeeeCCCCCcEEEEEeC---CCeEEEEeCCcee
Q 016224 361 LCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVI 391 (393)
Q Consensus 361 ~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~ 391 (393)
+...++..+..++++.++ -+.+..+|+.+++
T Consensus 364 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 364 IAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223322222334444433 4667777776543
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.59 E-value=7.6 Score=22.74 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=23.4
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeEEEEEecCC
Q 016224 160 SGSDKLYSGS-KDETVRVWDCASGQCAGVINLGG 192 (393)
Q Consensus 160 ~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~ 192 (393)
|++++|+++. .+++|.++|..+++.+..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 4666666554 47788999988888777776543
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.31 E-value=21 Score=35.99 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=34.6
Q ss_pred eEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccC
Q 016224 211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT 259 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~ 259 (393)
.|+||+......-.+......+..+.|+.+ .|++...+|++++|++...
T Consensus 65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred eEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence 355555544333333334448889999988 8888999999999998754
No 455
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.06 E-value=39 Score=30.56 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=53.8
Q ss_pred CCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccc-cCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcc
Q 016224 228 PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCF-EPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQ 304 (393)
Q Consensus 228 ~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~ 304 (393)
....|.+|.|.++ .|......|.|+.=+.......+ +.........-.+..+++. ++.+.+++..|.+. .....|+
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGk 263 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGK 263 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTS
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCc
Confidence 4578999999998 55556688888887622221111 1111222234457888886 34555555566544 3334444
Q ss_pred eeeEe---ccCccceEEEEEc-CCEEEEEeCCCcEEEE
Q 016224 305 CIQTL---TEHTSVVMSLLCW-DQFLLSCSLDKTIKVW 338 (393)
Q Consensus 305 ~~~~~---~~~~~~v~~l~~~-~~~l~s~s~dg~i~iw 338 (393)
-=+.. ..-......+.|. ++.-.+.+.+|.|.-|
T Consensus 264 tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 264 TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred cceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 32222 2233456777776 5666667788877554
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.95 E-value=38 Score=30.30 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=42.3
Q ss_pred CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe------CCCcEEEEECCCCeE
Q 016224 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------KDETVRVWDCASGQC 184 (393)
Q Consensus 127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s------~dg~v~iwd~~~~~~ 184 (393)
.+..|.+||..+. +-...-.+-.+.|++|.|..+.++++.|. ....+..||..+..-
T Consensus 14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 5778999998876 55544455678999999987777777764 356788899877643
No 457
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=81.70 E-value=31 Score=32.34 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=22.6
Q ss_pred cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391 (393)
Q Consensus 357 ~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~ 391 (393)
.+..++ ..+++++++-+.+..|.+|.+.+..
T Consensus 432 ~i~~ls----~gGdRlfv~rs~~~~v~vw~~~~~~ 462 (465)
T KOG2714|consen 432 LIVRLS----SGGDRLFVVRSVESPVTVWEVLECE 462 (465)
T ss_pred cEEEEe----cCCeeEEEEEeccCceeEEEecCCC
Confidence 355554 3355688888889999999988754
No 458
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=81.12 E-value=51 Score=32.46 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=77.6
Q ss_pred ceEEeeEecCcEEE-ec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC----CCEEEEEeCCCcEEEEECCC-
Q 016224 111 DILCRNWVQGNCMY-GE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG----SDKLYSGSKDETVRVWDCAS- 181 (393)
Q Consensus 111 ~i~c~~~~~~~~~~-g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~----~~~l~s~s~dg~v~iwd~~~- 181 (393)
++.-++|-+++.+. .. ..|.++.= +. +.+..| ..|..+.|.|- ...|++......|.||.+.-
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds-~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFG---DS-KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccC---Cc-cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 77788888775442 11 12222221 11 334333 46889999874 44677777888999998752
Q ss_pred ----CeEE--EEEecCCc-----eEEE-EeCCCEEEEEcCC-eEEEEECCCCc--eeeecCCCCcEEEEEEeCC---EEE
Q 016224 182 ----GQCA--GVINLGGE-----VGCM-ISEGPWIFIGVTN-FVKAWNTQTNT--DLSLSGPVGQVYAMAVGND---LLF 243 (393)
Q Consensus 182 ----~~~~--~~~~~~~~-----~~~~-~~~~~~l~~~~~~-~i~v~d~~~~~--~~~~~~~~~~v~~l~~~~~---~l~ 243 (393)
++.+ ++-+..++ -.|+ .+...+|++-... .-.+++++... ...-....+.|.|.+|..| +++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 2221 22222221 1333 3566666664333 33344554332 2223356788999999887 444
Q ss_pred EEeCCCcEEEEEeccC
Q 016224 244 AGTQDGAILAWKFNVT 259 (393)
Q Consensus 244 ~~~~dg~I~vwd~~~~ 259 (393)
+.+..=.-++||-...
T Consensus 173 AvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeCCeEEEEEecCchh
Confidence 4444555678876544
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=81.06 E-value=6.8 Score=23.65 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=25.4
Q ss_pred EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 358 v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
+.++.|+|.+....+|+.+-.-|.|.|+|+++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 67889997654334888888889999999984
No 460
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=81.06 E-value=54 Score=35.10 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=84.1
Q ss_pred CEEEEEeC---------CCcEEEEECCC-----Ce-----EEEE---EecCCceEEEEeCCCEEEEEcCCeEEEEECCC-
Q 016224 163 DKLYSGSK---------DETVRVWDCAS-----GQ-----CAGV---INLGGEVGCMISEGPWIFIGVTNFVKAWNTQT- 219 (393)
Q Consensus 163 ~~l~s~s~---------dg~v~iwd~~~-----~~-----~~~~---~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~- 219 (393)
.+|+.|.. -|.+.|+|+-+ ++ .++. -+..+.+..+..-..+++.+....|.+|+++.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRD 1126 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccC
Confidence 57887743 48999999732 21 1222 23446667777777788888888999999944
Q ss_pred Ccee--eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCC--EEEEecCCC
Q 016224 220 NTDL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GAN--KLYSGSMDN 293 (393)
Q Consensus 220 ~~~~--~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~--~l~sg~~dg 293 (393)
...+ .+....-.|.++..-.++|+.|..-..|.+.-+........++.. ....-.++++.| +|. .++++..|+
T Consensus 1127 ~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~sr-d~~~l~v~s~EFLVdg~~L~flvsDa~r 1205 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSR-DFEPLNVYSTEFLVDGSNLSFLVSDADR 1205 (1366)
T ss_pred CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeec-CCchhhceeeeeEEcCCeeEEEEEcCCC
Confidence 4433 444444555555555668888888888888776654221111111 112233444444 444 588999999
Q ss_pred cEEEeeC
Q 016224 294 SIRVWNL 300 (393)
Q Consensus 294 ~i~iwd~ 300 (393)
.|+++-.
T Consensus 1206 Ni~vy~Y 1212 (1366)
T KOG1896|consen 1206 NIHVYMY 1212 (1366)
T ss_pred cEEEEEe
Confidence 9998754
No 461
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=80.48 E-value=4.9 Score=23.59 Aligned_cols=24 Identities=13% Similarity=-0.141 Sum_probs=15.4
Q ss_pred EEEEcCCEEEEEeCCCcEEEEEcC
Q 016224 318 SLLCWDQFLLSCSLDKTIKVWFAT 341 (393)
Q Consensus 318 ~l~~~~~~l~s~s~dg~i~iwd~~ 341 (393)
++...+..++.++.||.|..+|.+
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT
T ss_pred CCEEECCEEEEEcCCCEEEEEeCC
Confidence 345567777777788888877764
No 462
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.66 E-value=61 Score=31.32 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=71.5
Q ss_pred EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-------CCEEEEecCCCcEEEeeCCC-cceeeEeccC
Q 016224 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-------ANKLYSGSMDNSIRVWNLET-LQCIQTLTEH 312 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~ 312 (393)
++..|.....++-.|+..+ +.+.....|...+....+. ...-+.|-++..|.-.|.+- +..+.... .
T Consensus 482 i~~dg~~~~kLykmDIErG----kvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-s 556 (776)
T COG5167 482 IYLDGGERDKLYKMDIERG----KVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-S 556 (776)
T ss_pred EEecCCCcccceeeecccc----eeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-e
Confidence 4555666666777777766 4455555555444333221 23455666777777778764 32222221 1
Q ss_pred ccceEEEEE------cCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224 313 TSVVMSLLC------WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386 (393)
Q Consensus 313 ~~~v~~l~~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd 386 (393)
...++.-.| ...+++++|..|.|++||--.-.....+...... +..+....++. +|++.+. ..+.+-|
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~a--Ik~idvta~Gk---~ilaTCk-~yllL~d 630 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA--IKHIDVTANGK---HILATCK-NYLLLTD 630 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccc--eeeeEeecCCc---EEEEeec-ceEEEEe
Confidence 112222222 2579999999999999986432222222333332 33344333332 5554443 4666666
Q ss_pred CC
Q 016224 387 LP 388 (393)
Q Consensus 387 ~~ 388 (393)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 463
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.62 E-value=49 Score=30.14 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=33.4
Q ss_pred EEEcCCEEEEecCC-----CcEEEeeCCCcce---eeEecc---CccceEEEEEcCCEEEEEeC-----CCcEEEEEcCC
Q 016224 279 LVVGANKLYSGSMD-----NSIRVWNLETLQC---IQTLTE---HTSVVMSLLCWDQFLLSCSL-----DKTIKVWFATD 342 (393)
Q Consensus 279 l~~~~~~l~sg~~d-----g~i~iwd~~~~~~---~~~~~~---~~~~v~~l~~~~~~l~s~s~-----dg~i~iwd~~~ 342 (393)
+..++.+++.|+.+ ..+..+|+.+.+. ...+.. .........+.+.+.+.|+. ...+..||+.+
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 44556666777654 3566777766542 122211 11112233344566666664 23578888765
Q ss_pred C
Q 016224 343 S 343 (393)
Q Consensus 343 ~ 343 (393)
.
T Consensus 149 ~ 149 (323)
T TIGR03548 149 Q 149 (323)
T ss_pred C
Confidence 4
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.21 E-value=12 Score=30.66 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=19.7
Q ss_pred EEeeEecCcEEEecCCCeEEEEEC
Q 016224 113 LCRNWVQGNCMYGEKCKFLHSWTV 136 (393)
Q Consensus 113 ~c~~~~~~~~~~g~~dg~i~vwd~ 136 (393)
.|++||.|+.++...+..|+|.+.
T Consensus 8 ~~l~WS~Dg~laV~t~~~v~IL~~ 31 (173)
T PF12657_consen 8 NALAWSEDGQLAVATGESVHILDP 31 (173)
T ss_pred cCeeECCCCCEEEEcCCeEEEEec
Confidence 688999998888888888888843
No 465
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.52 E-value=7.8 Score=20.75 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.0
Q ss_pred CcEEEEEEeCCEEEEEeCCCcEEEE
Q 016224 230 GQVYAMAVGNDLLFAGTQDGAILAW 254 (393)
Q Consensus 230 ~~v~~l~~~~~~l~~~~~dg~I~vw 254 (393)
..|.+++..+.++++++..+.+++|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 3578888888899999988888887
No 466
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.42 E-value=6.4 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=20.1
Q ss_pred EEEEecCCCcEEEeeCCCcceeeEecc
Q 016224 285 KLYSGSMDNSIRVWNLETLQCIQTLTE 311 (393)
Q Consensus 285 ~l~sg~~dg~i~iwd~~~~~~~~~~~~ 311 (393)
.++.++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 455667888888888888888777653
No 467
>PRK10115 protease 2; Provisional
Probab=76.08 E-value=98 Score=31.77 Aligned_cols=183 Identities=9% Similarity=-0.006 Sum_probs=86.7
Q ss_pred EeCCCEEEEEcC--C----eEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCC-----CcEEEEEeccCCc
Q 016224 198 ISEGPWIFIGVT--N----FVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQD-----GAILAWKFNVTTN 261 (393)
Q Consensus 198 ~~~~~~l~~~~~--~----~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~d-----g~I~vwd~~~~~~ 261 (393)
.+++++|+.+.| | .|++.|+.++..+ .+... . ..++|.++ ++++...+ ..|+.+++.+...
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 467888777532 2 6889999888643 22221 1 45888765 44444332 3567777776532
Q ss_pred cccCceeecCceeeEEEEEE-cCCEEEEec---CCCcEEEeeCC--CcceeeEeccCccceEEEEEcCCEEEEEeC----
Q 016224 262 CFEPAASLKGHSLAVVSLVV-GANKLYSGS---MDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLCWDQFLLSCSL---- 331 (393)
Q Consensus 262 ~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~---~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~---- 331 (393)
.-.++..-......+..... ++.+++..+ .++.+.+++.. +++....+.........+...+..|..-+.
T Consensus 212 ~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~ 291 (686)
T PRK10115 212 QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGK 291 (686)
T ss_pred HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCC
Confidence 22223222222222222222 455544333 34678888853 333222222222222333322333332222
Q ss_pred CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224 332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387 (393)
Q Consensus 332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~ 387 (393)
...|...++........+..+.....+..+.+. .+.++++...+|.-+++-+
T Consensus 292 ~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~----~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 292 NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF----TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CceEEEecCCCcccCeEEECCCCCCEEEEEEEE----CCEEEEEEEeCCEEEEEEE
Confidence 123444444433334455554333346666654 2236667766777555543
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.69 E-value=0.39 Score=45.05 Aligned_cols=102 Identities=21% Similarity=0.327 Sum_probs=64.2
Q ss_pred CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcc
Q 016224 230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ 304 (393)
Q Consensus 230 ~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~ 304 (393)
+....|+|+-+ .++.+-..+.+.+||+.+... ..+..-..|.... +.|+ ...++.+...+.+.|++..+.+
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~eyt--qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT--QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhhH--HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchh
Confidence 33445555443 566677888999999987532 1111111222222 3344 3457777788999999988777
Q ss_pred eeeEeccCccceEEEEEc-CCEEEEEeCCCcE
Q 016224 305 CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTI 335 (393)
Q Consensus 305 ~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i 335 (393)
.+-..-.|...++++++. .++.+.++.|..+
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred hhhhhcccccceeEEEecccceeeecCcHHHH
Confidence 666665588888888887 5666666655443
No 469
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=75.14 E-value=65 Score=29.24 Aligned_cols=213 Identities=11% Similarity=0.076 Sum_probs=100.3
Q ss_pred ecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceE--EEEeCCCEEEEEcCCeEEEEECCCCce-eeec-----CC
Q 016224 158 LPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGVTNFVKAWNTQTNTD-LSLS-----GP 228 (393)
Q Consensus 158 ~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~i~v~d~~~~~~-~~~~-----~~ 228 (393)
|.++.. ++.+--..+.|.-|+..+++. ..+..+..+. .....+..|++. +..+.+++.+++.. ..+. ..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEE-ccccEEEeccCCceeEEeccccCCCC
Confidence 566655 344444567888888776543 2333333332 223344444443 33344455554444 2111 11
Q ss_pred CCcEEEEEEeCC-EEEEEeCCC----------cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC-CCc
Q 016224 229 VGQVYAMAVGND-LLFAGTQDG----------AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-DNS 294 (393)
Q Consensus 229 ~~~v~~l~~~~~-~l~~~~~dg----------~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg~ 294 (393)
....+.+...++ .+..++... .-.+|.+.... ........+-..-..|+|+ ++.|+.+.. .+.
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 234456666666 444444331 01233333211 2223333333333556665 555555544 578
Q ss_pred EEEeeCCC--cce-----eeEeccCccceEEEEEc--CCEEEEEeCCC-cEEEEEcCCCcceEEEEeecCCccEEEEEee
Q 016224 295 IRVWNLET--LQC-----IQTLTEHTSVVMSLLCW--DQFLLSCSLDK-TIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364 (393)
Q Consensus 295 i~iwd~~~--~~~-----~~~~~~~~~~v~~l~~~--~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 364 (393)
|.-|++.. +.. ...+....+.--.++.+ +.+.+++-.+| .|.+|+.. ++.+..+..... .+.+++|-
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~--~~t~~~Fg 263 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK--RPTNPAFG 263 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC--CCccceEe
Confidence 88887752 111 11111222333333444 55554444444 89999987 766666655432 35556654
Q ss_pred eCCCCCcEEEEEeCC
Q 016224 365 PDSEGKPVLLCSCND 379 (393)
Q Consensus 365 ~~~~~~~~l~s~s~d 379 (393)
-.. .+.+++|+...
T Consensus 264 G~~-~~~L~iTs~~~ 277 (307)
T COG3386 264 GPD-LNTLYITSARS 277 (307)
T ss_pred CCC-cCEEEEEecCC
Confidence 321 23355555444
No 470
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.82 E-value=10 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.9
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 016224 164 KLYSGSKDETVRVWDCASGQCAGVINLGG 192 (393)
Q Consensus 164 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 192 (393)
.++.++.||.|.-.|.++|+.+..++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45666889999999999999888776543
No 471
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.42 E-value=8.5 Score=21.15 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEE
Q 016224 164 KLYSGSKDETVRVWDCASGQCAGV 187 (393)
Q Consensus 164 ~l~s~s~dg~v~iwd~~~~~~~~~ 187 (393)
.++.++.+|.+..+|.++|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677788889999999988887654
No 472
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=74.40 E-value=12 Score=37.93 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=79.6
Q ss_pred EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCC-----cceeeEeccCccc
Q 016224 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET-----LQCIQTLTEHTSV 315 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~~~~ 315 (393)
.+..|++++.|.++.-...................+.++.+....+..|.-||++-.+--.- +++-..+.....+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lP 628 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLP 628 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCCcc
Confidence 78888999999998766333221222223334556677777666666666666665542211 1122333344557
Q ss_pred eEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC-ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224 316 VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE-HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389 (393)
Q Consensus 316 v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s 389 (393)
|.++++..++++ ++.+|.|.++...+.........|..+ ..|..+.+. ..+ +.++-...-.+++++.++
T Consensus 629 vrsla~~ed~~w-as~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~---~~g-VwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 629 VRSLAFQEDFVW-ASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYL---DNG-VWVAFASGDEERLFHTET 698 (925)
T ss_pred ccchhhhhceee-eecCCceEEEechhccccchhHHHHhhcceEEEEEee---CCc-eEEEEcCCCEEEEecccc
Confidence 777777766544 567999999998776554444444333 234444433 233 333333333555555443
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.02 E-value=26 Score=28.62 Aligned_cols=29 Identities=24% Similarity=0.145 Sum_probs=24.6
Q ss_pred CcEEEEEEeCC--------EEEEEeCCCcEEEEEecc
Q 016224 230 GQVYAMAVGND--------LLFAGTQDGAILAWKFNV 258 (393)
Q Consensus 230 ~~v~~l~~~~~--------~l~~~~~dg~I~vwd~~~ 258 (393)
..+..++|+|. +|++-+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 38899999984 899999999999996543
No 474
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.61 E-value=69 Score=28.86 Aligned_cols=210 Identities=16% Similarity=0.175 Sum_probs=114.9
Q ss_pred CEEEEEecCCCCEEEEEeCCCcEEEEECC------CC-eEEEEEecC-------CceEEEE--------------eCCCE
Q 016224 152 VVSGITLPSGSDKLYSGSKDETVRVWDCA------SG-QCAGVINLG-------GEVGCMI--------------SEGPW 203 (393)
Q Consensus 152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~------~~-~~~~~~~~~-------~~~~~~~--------------~~~~~ 203 (393)
.-+.|+++|.+.+-++...-+...+||.. .. ..+-++... .+...++ ....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34678999988877777777899999986 12 223333211 1111111 12346
Q ss_pred EEEEcCCeEEEEECCCCce------eeecC-CCCcE-EEEEEe----CC-EEEEEeCCCcEEEEEeccCCccccCceeec
Q 016224 204 IFIGVTNFVKAWNTQTNTD------LSLSG-PVGQV-YAMAVG----ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK 270 (393)
Q Consensus 204 l~~~~~~~i~v~d~~~~~~------~~~~~-~~~~v-~~l~~~----~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~ 270 (393)
|+++.+++|.-|....... +.+.. ....| ..+++. .+ +.++--..++|.|||-.-.... ....+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--LPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--CCCCcc
Confidence 8889999999999654433 22221 12333 344443 23 4455556889999975543210 000111
Q ss_pred Cc-----eeeEEEEEEcCCE-------------EEEecCCCcEEEeeCCCcceeeEeccCccc---eEEEEE--------
Q 016224 271 GH-----SLAVVSLVVGANK-------------LYSGSMDNSIRVWNLETLQCIQTLTEHTSV---VMSLLC-------- 321 (393)
Q Consensus 271 ~~-----~~~v~~l~~~~~~-------------l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~l~~-------- 321 (393)
.. -.+-.-....+++ =+.|..-|.|-+||+. ++.++++. +.+. -+.|+.
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~a-s~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVA-SSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEec-cCCcccCCceeeeChhhhCCC
Confidence 00 0000001111222 2334455799999975 78888774 2222 233333
Q ss_pred cCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC----ccEEEEEeee
Q 016224 322 WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE----HGVLALCGMP 365 (393)
Q Consensus 322 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~ 365 (393)
++.+|+---.||+|..||..+++.+-.+...... .....+.|-.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 2567777777999999999888766666543322 2355666654
No 475
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=73.58 E-value=57 Score=32.00 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=56.9
Q ss_pred CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeec-CceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCc
Q 016224 227 GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETL 303 (393)
Q Consensus 227 ~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~ 303 (393)
....+|..+.++-+ .+.+|+.||- ..||..+++ ...... .....|..+..+ ...|..|+.+| |.+.+.+..
T Consensus 162 l~d~~V~aLv~D~~g~lWvgT~dGL-~~fd~~~gk----alql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 162 LKDTPVVALVFDANGRLWVGTPDGL-SYFDAGRGK----ALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred ccCccceeeeeeccCcEEEecCCcc-eEEccccce----EEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhc
Confidence 34567888888776 8888888874 455555432 111111 112344444444 45688887766 677776652
Q ss_pred ceeeEec-cCccceEEEEEc-CCEEEEEeCCCcEEE
Q 016224 304 QCIQTLT-EHTSVVMSLLCW-DQFLLSCSLDKTIKV 337 (393)
Q Consensus 304 ~~~~~~~-~~~~~v~~l~~~-~~~l~s~s~dg~i~i 337 (393)
+...... -....|..+.-+ ...+-.|+..|..+.
T Consensus 236 ~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~ 271 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRT 271 (671)
T ss_pred cccccCCCCcchheeeeecccCCCEEEeecccceeE
Confidence 2221111 123344555444 346666776665543
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.50 E-value=15 Score=21.17 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=20.2
Q ss_pred ecCCcCCEEEEEecCCCCEEEEEeC-C--CcEEEE
Q 016224 146 LEGHQKVVSGITLPSGSDKLYSGSK-D--ETVRVW 177 (393)
Q Consensus 146 l~~h~~~I~~i~~s~~~~~l~s~s~-d--g~v~iw 177 (393)
+......-....|+|||+.|+-++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445567778899999988776543 4 555554
No 477
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=72.44 E-value=2.1 Score=21.89 Aligned_cols=19 Identities=37% Similarity=0.793 Sum_probs=15.4
Q ss_pred eeeeccc-ccCCCCCCcccc
Q 016224 38 CNYWRAG-KCNRFPCPYLHR 56 (393)
Q Consensus 38 ~~~~~~~-~~~~~~~~~~~~ 56 (393)
|.|=.+| .||..-|+|+|-
T Consensus 3 C~yEl~Gg~Cnd~~C~~QHf 22 (23)
T PF10650_consen 3 CPYELTGGVCNDPDCEFQHF 22 (23)
T ss_pred CccccCCCeeCCCCCCcccc
Confidence 5666677 899999999984
No 478
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=72.03 E-value=3.2 Score=42.25 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=37.7
Q ss_pred EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEe-----------cCCCCEEEEEeCCCcEEEEEC
Q 016224 124 YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-----------PSGSDKLYSGSKDETVRVWDC 179 (393)
Q Consensus 124 ~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~-----------s~~~~~l~s~s~dg~v~iwd~ 179 (393)
.+..++.|++...... ....+.+|...++.++| +|||..++.+..||.++.|.+
T Consensus 200 ~~~~~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 200 YGLKGGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eccCCCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 5778888888776654 22455678888777765 577777777777777777764
No 479
>PLN02193 nitrile-specifier protein
Probab=70.59 E-value=1.1e+02 Score=29.77 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=63.0
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEec---CC---ceEEEEeCCCEEEEE-cC-----CeEEEEECCCCcee
Q 016224 161 GSDKLYSGSKD-----ETVRVWDCASGQCAGVINL---GG---EVGCMISEGPWIFIG-VT-----NFVKAWNTQTNTDL 223 (393)
Q Consensus 161 ~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~---~~---~~~~~~~~~~~l~~~-~~-----~~i~v~d~~~~~~~ 223 (393)
++.+.+.|+.+ ..+.++|+.+.+-...... +. .......++++++.| .+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45566666654 3578888887654332221 11 112223455555554 22 35778888877644
Q ss_pred eecC------CCCcEEEEEEeCCEEEEEeCC----CcEEEEEeccCCccccCceee---cCceeeEEEEEEcCCEEEEec
Q 016224 224 SLSG------PVGQVYAMAVGNDLLFAGTQD----GAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVGANKLYSGS 290 (393)
Q Consensus 224 ~~~~------~~~~v~~l~~~~~~l~~~~~d----g~I~vwd~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~l~sg~ 290 (393)
.+.. .........+...+++.++.+ ..+.+||+.+.. +..+... ........++.+++.+++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 3221 111222233444566666655 457888877643 2222111 111112233445566677777
Q ss_pred C
Q 016224 291 M 291 (393)
Q Consensus 291 ~ 291 (393)
.
T Consensus 386 ~ 386 (470)
T PLN02193 386 E 386 (470)
T ss_pred c
Confidence 5
No 480
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.40 E-value=27 Score=29.61 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=37.2
Q ss_pred cEEEEEEeC-CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEec
Q 016224 231 QVYAMAVGN-DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS 290 (393)
Q Consensus 231 ~v~~l~~~~-~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~ 290 (393)
+...+...+ |.|+.+.....|.+|++.... .++...+.. -+.|..+.++ |++|+|--
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEE--CPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCC--CceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 344455555 766666788889999998432 244555543 3677777775 78888754
No 481
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=70.10 E-value=39 Score=34.34 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=61.8
Q ss_pred EEEEEeCCCcEEEEEeccCC----------------ccccCceeecCceeeEEEEEEc----CCEEEEecCCCcEEEeeC
Q 016224 241 LLFAGTQDGAILAWKFNVTT----------------NCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVWNL 300 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~----------------~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~iwd~ 300 (393)
.|+++.+||.|.+|.++.-. ...++...+. -...+..+++. .++||+++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 89999999999999763210 0011222222 23456777765 457888888888888765
Q ss_pred CCc--ce-eeEeccCccceEEEEEc-----CC---EEEEEeCCCcEEEEEc
Q 016224 301 ETL--QC-IQTLTEHTSVVMSLLCW-----DQ---FLLSCSLDKTIKVWFA 340 (393)
Q Consensus 301 ~~~--~~-~~~~~~~~~~v~~l~~~-----~~---~l~s~s~dg~i~iwd~ 340 (393)
... +. ...-..+...|-+|+|- +. .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 431 11 11111255567777775 22 6888899999999887
No 482
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.80 E-value=1.1e+02 Score=29.37 Aligned_cols=121 Identities=9% Similarity=0.069 Sum_probs=68.9
Q ss_pred CCEEEEEcCCeEEEEECCCCc---eee-ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCcee
Q 016224 201 GPWIFIGVTNFVKAWNTQTNT---DLS-LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL 274 (393)
Q Consensus 201 ~~~l~~~~~~~i~v~d~~~~~---~~~-~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~ 274 (393)
++.+++...+.+.-|-+.... .+. -....++|.++.|++| .|++--.+.+|.+++..............+....
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~ 113 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNA 113 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcc
Confidence 445555555544444443221 122 2234569999999998 8899999999999998654433333344444556
Q ss_pred eEEEEEEcCC-EEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc
Q 016224 275 AVVSLVVGAN-KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW 322 (393)
Q Consensus 275 ~v~~l~~~~~-~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~ 322 (393)
.|..+.|..+ -+|.-+..| +-+|-... .+.++..+.|...|.-..|.
T Consensus 114 ~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 114 NILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred eeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc
Confidence 6888888654 344443333 44554322 22334444555555444444
No 483
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.57 E-value=1e+02 Score=29.16 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=72.0
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCeEE-EEEe--cCCceEE--EEeCCCEEEEEcCCeEEEEECCCCc-----ee
Q 016224 154 SGITLPSGSDKLYSGSKDETVRVWDCASGQCA-GVIN--LGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNT-----DL 223 (393)
Q Consensus 154 ~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~--~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~-----~~ 223 (393)
..+..++++.+++.+..-..++-||- ++.. .... ....+.. ...++.+++++..+.+..-+ ..++ .+
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d~G~~~~~~~f 318 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSK-GTGLTEEDFDF 318 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEec-CCCCcccccce
Confidence 34455677766665543332333442 2221 1111 2222222 23578888888777765433 3332 12
Q ss_pred e-ec--CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEe
Q 016224 224 S-LS--GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVW 298 (393)
Q Consensus 224 ~-~~--~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iw 298 (393)
. .. .....+.++.+.++ .+++++..|.+.... .+...++.......-....+.+.+. ++..+..+.+|.|.-|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~--D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST--DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC--CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 1 11 12235888888776 777778888776653 2222222222112223456777764 4667777778877654
No 484
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.71 E-value=11 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEcCCEEEEecCCCcEEEeeCCC
Q 016224 279 LVVGANKLYSGSMDNSIRVWNLET 302 (393)
Q Consensus 279 l~~~~~~l~sg~~dg~i~iwd~~~ 302 (393)
+...++.++.++.||.|..+|.++
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 366788999999999999999864
No 485
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=67.52 E-value=13 Score=38.29 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=64.6
Q ss_pred EEEEEeCCCcEEEEEeccCCccccCceeecCceee-------------EEEEEEcCCEEEEecCCCcEEEeeC-----CC
Q 016224 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA-------------VVSLVVGANKLYSGSMDNSIRVWNL-----ET 302 (393)
Q Consensus 241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~-------------v~~l~~~~~~l~sg~~dg~i~iwd~-----~~ 302 (393)
++..+-.++.|++..++.... ..+.+|... +..++++|..|+.+..||.++.|-+ ..
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~ 271 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV 271 (1283)
T ss_pred eeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence 677777888888887765421 222334333 3456778899999999998877755 34
Q ss_pred cceeeEeccCc-cceEEEEEcC-----------CEEEEEeC-CCcEEEEEcCCCcce
Q 016224 303 LQCIQTLTEHT-SVVMSLLCWD-----------QFLLSCSL-DKTIKVWFATDSGNL 346 (393)
Q Consensus 303 ~~~~~~~~~~~-~~v~~l~~~~-----------~~l~s~s~-dg~i~iwd~~~~~~~ 346 (393)
-++++.++.|. .+-.|..|.. .++++++. ...+++|.....+++
T Consensus 272 ~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 272 HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 56677778777 4444444552 24555544 456999976655544
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=67.50 E-value=18 Score=36.40 Aligned_cols=35 Identities=9% Similarity=0.236 Sum_probs=29.1
Q ss_pred cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224 150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
..-+++|.-+|.++.+++++.||.|++|+......
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 34577788889999999999999999999865543
No 487
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=66.67 E-value=1.7e+02 Score=30.46 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=25.7
Q ss_pred EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184 (393)
Q Consensus 143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 184 (393)
+.-+.+| .|.+|+.+.+..+++| .+|.|.-|-++....
T Consensus 223 V~gL~gh--~~~qisvs~~HslvLT--~~g~Vys~GlN~~hq 260 (1267)
T KOG0783|consen 223 VPGLIGH--KVIQISVSHTHSLVLT--KFGSVYSWGLNGSHQ 260 (1267)
T ss_pred ccccccc--ceEEEEeecceeEEEe--ecceEEEeecCcccc
Confidence 3344555 5778888777665554 688999998875443
No 488
>PRK13684 Ycf48-like protein; Provisional
Probab=65.90 E-value=1.1e+02 Score=28.12 Aligned_cols=206 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCCCCcccccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCE
Q 016224 85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK 164 (393)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~ 164 (393)
..+...+|........... .+.......++..+.+...|.|..=+-.-. .-......-...+.++.+.+++.+
T Consensus 114 S~DgG~tW~~~~~~~~~~~------~~~~i~~~~~~~~~~~g~~G~i~~S~DgG~-tW~~~~~~~~g~~~~i~~~~~g~~ 186 (334)
T PRK13684 114 TTDGGKNWTRIPLSEKLPG------SPYLITALGPGTAEMATNVGAIYRTTDGGK-NWEALVEDAAGVVRNLRRSPDGKY 186 (334)
T ss_pred ECCCCCCCeEccCCcCCCC------CceEEEEECCCcceeeeccceEEEECCCCC-CceeCcCCCcceEEEEEECCCCeE
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE---eCCCEEEEEcCCeEEEEECCCCceeeecCCC-----CcEEEEE
Q 016224 165 LYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI---SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV-----GQVYAMA 236 (393)
Q Consensus 165 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~-----~~v~~l~ 236 (393)
++++..-...+.++-....-.............. +++..++++..+.+.+-....+......... ..+.++.
T Consensus 187 v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~ 266 (334)
T PRK13684 187 VAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLA 266 (334)
T ss_pred EEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEE
Q ss_pred EeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE-cCCEEEEecCCCcEEEee
Q 016224 237 VGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-GANKLYSGSMDNSIRVWN 299 (393)
Q Consensus 237 ~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~iwd 299 (393)
+.++ .+++++.+|.|.. -......++.......-......+.+ +++..+..+..|.|..|+
T Consensus 267 ~~~~~~~~~~G~~G~v~~--S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 267 YRTPGEIWAGGGNGTLLV--SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred EcCCCCEEEEcCCCeEEE--eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
No 489
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.18 E-value=95 Score=33.27 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=61.4
Q ss_pred CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc
Q 016224 229 VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL 303 (393)
Q Consensus 229 ~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~ 303 (393)
.....++.|+|. ..++...|+.|.+..+..... .... .......++++|+ |.+++.|-..|++.-|-.. +
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~---~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-l 229 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ---NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-L 229 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhh---hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-c
Confidence 345667888886 678888999999987665421 1111 2245567888887 5689999999999988764 3
Q ss_pred ceeeEecc----CccceEEEEEcCC
Q 016224 304 QCIQTLTE----HTSVVMSLLCWDQ 324 (393)
Q Consensus 304 ~~~~~~~~----~~~~v~~l~~~~~ 324 (393)
+....+.. ....|.+|.|-+.
T Consensus 230 eik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 230 EIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred ceeecccCCCcCCCcceeEEEEecc
Confidence 33333321 1367899999854
No 490
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=64.58 E-value=1.2e+02 Score=28.25 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=9.5
Q ss_pred eEEEEECCCCceee
Q 016224 211 FVKAWNTQTNTDLS 224 (393)
Q Consensus 211 ~i~v~d~~~~~~~~ 224 (393)
.+..||..+++-..
T Consensus 107 ~v~~YD~~~n~W~~ 120 (376)
T PRK14131 107 DVYKYDPKTNSWQK 120 (376)
T ss_pred cEEEEeCCCCEEEe
Confidence 47778888776543
No 491
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=64.13 E-value=1.5e+02 Score=29.18 Aligned_cols=264 Identities=13% Similarity=0.075 Sum_probs=116.1
Q ss_pred eecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224 108 IKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185 (393)
Q Consensus 108 ~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 185 (393)
...+|..+-+... .+..|+.||- ..||..++ +.++.-.... .+|..+..+-.++ |..|+.+| |.+.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL-~~fd~~~g-kalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGL-SYFDAGRG-KALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcc-eEEccccc-eEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc
Confidence 3446677777644 5566777765 45677777 5554333333 6777776666554 66677665 677776542211
Q ss_pred EEEe--cCCceEEEEeC-CCEEEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEec
Q 016224 186 GVIN--LGGEVGCMISE-GPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFN 257 (393)
Q Consensus 186 ~~~~--~~~~~~~~~~~-~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~ 257 (393)
.... ....+..+..| ...+-.|.++-+-.+........ ......+.|.++..+.+ -|-+++.++.+.+-+-.
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred ccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch
Confidence 1110 01112222221 11222333322222233322222 11222345666666666 77888887766654322
Q ss_pred cCCccccCceeecCceeeE---EEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEc-CCEEEEEe
Q 016224 258 VTTNCFEPAASLKGHSLAV---VSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW-DQFLLSCS 330 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v---~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~-~~~l~s~s 330 (393)
- .....+....+.+ ...++ ....+--...-|.+.+-+-.++..+.+... -...|+.+.+. ...+-.++
T Consensus 319 w-----~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs 393 (671)
T COG3292 319 W-----KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGS 393 (671)
T ss_pred h-----hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEe
Confidence 1 1111111111111 11111 011111122222333344444444443221 12234444444 44566677
Q ss_pred CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384 (393)
Q Consensus 331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i 384 (393)
...-+..|+..+...............+.++.-.|++. |..|+.+|.++.
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns----LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS----LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC----EEEeccCCeEec
Confidence 76566667665422111111111122344444333332 778888876653
No 492
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=61.78 E-value=1e+02 Score=30.36 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEEcCCEEEEecCCCcEEEeeC---CCcceeeEeccCccceEEEEEcCCEEEEEe-------------------------
Q 016224 279 LVVGANKLYSGSMDNSIRVWNL---ETLQCIQTLTEHTSVVMSLLCWDQFLLSCS------------------------- 330 (393)
Q Consensus 279 l~~~~~~l~sg~~dg~i~iwd~---~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s------------------------- 330 (393)
+.-+|++|++.. ++.|.|+|. .+.+.+.++..... +..|-.+++.|++-+
T Consensus 18 VKTDG~yIY~v~-~~~l~Iida~p~~~~~~~s~I~~~~~-~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (521)
T PF09826_consen 18 VKTDGEYIYVVS-GGRLYIIDAYPAEEMKVVSRIDLDGS-PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYK 95 (521)
T ss_pred EEECCCEEEEEe-CCEEEEEECCCchhceEEEEEecCCC-hhheEEcCCEEEEEEeccccccccccccccccccccccCC
Q ss_pred CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224 331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375 (393)
Q Consensus 331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s 375 (393)
.--.+.+||+...+.+..+..........+....-+.- ++++
T Consensus 96 ~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~v---y~Vt 137 (521)
T PF09826_consen 96 SSTKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYV---YLVT 137 (521)
T ss_pred ceeEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEE---EEEE
No 493
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=59.76 E-value=4.5 Score=28.20 Aligned_cols=17 Identities=35% Similarity=0.829 Sum_probs=14.0
Q ss_pred ccccCCCCCCcccccCC
Q 016224 43 AGKCNRFPCPYLHRELP 59 (393)
Q Consensus 43 ~~~~~~~~~~~~~~~~p 59 (393)
-|+|+..|||.+|-+-.
T Consensus 25 vg~CSppPCPvi~veYk 41 (96)
T PF15500_consen 25 VGLCSPPPCPVIRVEYK 41 (96)
T ss_pred ccccCCCCCCchhHHHH
Confidence 48999999999996543
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=58.76 E-value=1.4e+02 Score=26.80 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=52.5
Q ss_pred eEEEEECCCCceeee-cCCCCcEEEEEEe-CC-EEEEEe------CCCcEEEEEeccCCccccCcee-e-cCceeeEEEE
Q 016224 211 FVKAWNTQTNTDLSL-SGPVGQVYAMAVG-ND-LLFAGT------QDGAILAWKFNVTTNCFEPAAS-L-KGHSLAVVSL 279 (393)
Q Consensus 211 ~i~v~d~~~~~~~~~-~~~~~~v~~l~~~-~~-~l~~~~------~dg~I~vwd~~~~~~~~~~~~~-~-~~~~~~v~~l 279 (393)
.|.+||..+.+-..+ .+-.+.|.+|.|. .+ +++.|. ....+..||+....- ..... . ..-..+|..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEEEE
Confidence 566777766665533 3456789999986 44 445443 355677888876531 11111 1 1123566666
Q ss_pred EE---cCC-EEEEec---CCCcEEEeeCCCcceeeE
Q 016224 280 VV---GAN-KLYSGS---MDNSIRVWNLETLQCIQT 308 (393)
Q Consensus 280 ~~---~~~-~l~sg~---~dg~i~iwd~~~~~~~~~ 308 (393)
.+ +.. ..+.|. .+..|..||-.+...+..
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 66 343 343433 234577787655444433
No 495
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.95 E-value=1.1e+02 Score=32.94 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=36.3
Q ss_pred CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCc
Q 016224 283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG 344 (393)
Q Consensus 283 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~ 344 (393)
.+.++.+..-+.+.+|+.........+....... ...+..++++..||.+..||...+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 209 PTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE---SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred CCCcceeeeeeeeeehhcccccchhhcccccccC---ccCCceEEEEEecCCEEeeecCCCc
Confidence 3445556666777777765443333332211111 3447789999999999999987653
No 496
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=56.75 E-value=1.4e+02 Score=26.21 Aligned_cols=181 Identities=8% Similarity=0.049 Sum_probs=88.6
Q ss_pred eCCCEEEE-E-cCCeEEEEECCCCcee-ee-cCCCCcEEEEEEeCC-EEEEEe-CCCcEEEEEeccCCccccC--cee--
Q 016224 199 SEGPWIFI-G-VTNFVKAWNTQTNTDL-SL-SGPVGQVYAMAVGND-LLFAGT-QDGAILAWKFNVTTNCFEP--AAS-- 268 (393)
Q Consensus 199 ~~~~~l~~-~-~~~~i~v~d~~~~~~~-~~-~~~~~~v~~l~~~~~-~l~~~~-~dg~I~vwd~~~~~~~~~~--~~~-- 268 (393)
++...|++ . ..+.|..++.. ++.+ .+ ....+..-.|++..+ .++... .++.+.++++......... ...
T Consensus 31 pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~ 109 (248)
T PF06977_consen 31 PDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKIS 109 (248)
T ss_dssp TTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE
T ss_pred CCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEe
Confidence 45555554 4 44577778865 4554 22 222466788888766 444444 5899999998543321111 011
Q ss_pred --e-cCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC---cceeeEe--------ccCccceEEEEEc---CCEEEEE
Q 016224 269 --L-KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET---LQCIQTL--------TEHTSVVMSLLCW---DQFLLSC 329 (393)
Q Consensus 269 --~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~---~~~~~~~--------~~~~~~v~~l~~~---~~~l~s~ 329 (393)
+ ..+...+-.++|+ .+.|+.+-......|+.+.. ...+... ......+.++.++ +.+++..
T Consensus 110 l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS 189 (248)
T PF06977_consen 110 LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS 189 (248)
T ss_dssp ---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE
T ss_pred cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEE
Confidence 1 1234457788887 35677777766666666543 1111111 1123346778887 4577778
Q ss_pred eCCCcEEEEEcCCCcceEEEEeecC-------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224 330 SLDKTIKVWFATDSGNLEVTYTHNE-------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFY 385 (393)
Q Consensus 330 s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw 385 (393)
..+..|.++|. +++.+..+.-... -...-.+++.+++. |+..++-+.+++|
T Consensus 190 ~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~----LYIvsEpNlfy~f 247 (248)
T PF06977_consen 190 DESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN----LYIVSEPNLFYRF 247 (248)
T ss_dssp TTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT------EEEEETTTEEEEE
T ss_pred CCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCC----EEEEcCCceEEEe
Confidence 88888999984 4554443332211 12355677766543 5666677766665
No 497
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=56.61 E-value=41 Score=20.15 Aligned_cols=34 Identities=3% Similarity=-0.020 Sum_probs=23.8
Q ss_pred ceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEE
Q 016224 315 VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348 (393)
Q Consensus 315 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 348 (393)
....+...++++..+..++-+.|.|+.+......
T Consensus 3 ~a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~~ 36 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNGLVIVDISNPSNPVL 36 (42)
T ss_pred eEEEEEEECCEEEEEeCCCCEEEEECCCCCCCEE
Confidence 3456677788887777777788888876655443
No 498
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=55.81 E-value=1.6e+02 Score=26.77 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcC---------------------CeEEEEECCC
Q 016224 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT---------------------NFVKAWNTQT 219 (393)
Q Consensus 161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~i~v~d~~~ 219 (393)
++++-++=+..|.|..+|.++|+.......++....+...|.++++|.. .-|.+.|+++
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~t 291 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNS 291 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCC
Confidence 5667777778889999998888777666666655555545777776522 1245566666
Q ss_pred Ccee---eecCCCCcEEEEEEeCC
Q 016224 220 NTDL---SLSGPVGQVYAMAVGND 240 (393)
Q Consensus 220 ~~~~---~~~~~~~~v~~l~~~~~ 240 (393)
+..+ .+.+...++.++++-|.
T Consensus 292 G~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 292 GDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CCEEEEEEeCCceeEEEEEEEecC
Confidence 6644 44455555555555554
No 499
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=53.43 E-value=2.9e+02 Score=28.98 Aligned_cols=66 Identities=6% Similarity=0.062 Sum_probs=34.7
Q ss_pred cCCEEEEEeCCCcEEEEEcCCC-cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224 322 WDQFLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388 (393)
Q Consensus 322 ~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~ 388 (393)
-+++|+.|..-..+.++-.... -.+..+........+++..|.-.+ +..+++++..+|.|+++...
T Consensus 1101 ~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G-~~lyf~~~Da~gnih~l~Y~ 1167 (1319)
T COG5161 1101 VKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTG-NELYFLCCDAKGNIHGLTYS 1167 (1319)
T ss_pred hhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccC-CeeEEEEEcCCCCEEEEecC
Confidence 3667777765555555444321 122222222222334455555444 33478888888998887553
No 500
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=52.44 E-value=57 Score=28.63 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=46.4
Q ss_pred ceeeEEEEEE------c---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc------CCEEEEEeCCCcEE
Q 016224 272 HSLAVVSLVV------G---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW------DQFLLSCSLDKTIK 336 (393)
Q Consensus 272 ~~~~v~~l~~------~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~------~~~l~s~s~dg~i~ 336 (393)
+...|+|++. + -..|+.|+++|.|.|.|.+....+..+.-..-++ .+... +-.|+.++.||.|+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEE
Confidence 3456777754 1 2369999999999999999888888776555444 22222 23578888898887
Q ss_pred EE
Q 016224 337 VW 338 (393)
Q Consensus 337 iw 338 (393)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
Done!