BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016225
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
+ + PR+ WT LH +F+ AV+ LG ERA PK +L+LM+V LT +V SHLQ +R
Sbjct: 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFR 57
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 112 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 171
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 172 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 210
>pdb|3HSM|A Chain A, Crystal Structure Of Distal N-Terminal Beta-Trefoil Domain
Of Ryanodine Receptor Type 1
pdb|3HSM|B Chain B, Crystal Structure Of Distal N-Terminal Beta-Trefoil Domain
Of Ryanodine Receptor Type 1
Length = 213
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 115 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 174
Query: 354 SNSSREAWLH-----GKTKDSAINLPSLEEVDPKCMSYE 387
+ S E +LH G+ + A + +L ++P C E
Sbjct: 175 VSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCE 213
>pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
Length = 287
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAH-----VKSHL- 296
R R P R T+ +ARF LLG + T +M V+ ++LA V++ L
Sbjct: 5 RGERTPAARRITSRNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLY 64
Query: 297 -----------QMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHP 334
++ RTV+T A A E G + +++ ++ P
Sbjct: 65 DGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMP 113
>pdb|3ILA|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|B Chain B, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|C Chain C, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|D Chain D, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|E Chain E, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|F Chain F, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|G Chain G, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|H Chain H, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|I Chain I, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
Length = 197
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 294 SHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLW 353
+H +MY + TT R+ AF+ G D + + + HP + S ++ + +
Sbjct: 104 AHSRMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLIL 163
Query: 354 SNSSREAWLHGKT 366
+ S E +LH T
Sbjct: 164 VSVSSERYLHLST 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,759,600
Number of Sequences: 62578
Number of extensions: 238864
Number of successful extensions: 408
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 14
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)