Query 016225
Match_columns 393
No_of_seqs 160 out of 437
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 10:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 2.4E-28 8.3E-33 189.1 5.5 60 244-304 2-61 (64)
2 2yus_A SWI/SNF-related matrix- 89.7 0.71 2.4E-05 36.1 6.0 51 244-300 13-63 (79)
3 2hzd_A Transcriptional enhance 88.3 0.31 1.1E-05 39.5 3.1 57 247-305 4-77 (82)
4 2yum_A ZZZ3 protein, zinc fing 83.0 1.7 5.8E-05 32.6 4.7 52 248-302 7-61 (75)
5 2cu7_A KIAA1915 protein; nucle 81.4 2.7 9.2E-05 31.6 5.3 50 247-302 7-56 (72)
6 1x41_A Transcriptional adaptor 75.1 3.2 0.00011 30.2 3.9 49 246-300 5-54 (60)
7 2cqq_A RSGI RUH-037, DNAJ homo 73.8 6.2 0.00021 30.5 5.4 48 249-302 8-58 (72)
8 2cqr_A RSGI RUH-043, DNAJ homo 72.1 10 0.00035 29.4 6.3 53 246-301 15-68 (73)
9 1ity_A TRF1; helix-turn-helix, 70.3 11 0.00038 27.8 6.0 54 243-299 4-57 (69)
10 2xag_B REST corepressor 1; ami 68.4 5.5 0.00019 40.7 5.2 51 247-303 378-428 (482)
11 2iw5_B Protein corest, REST co 67.8 7.2 0.00025 36.9 5.5 52 245-302 129-180 (235)
12 1wgx_A KIAA1903 protein; MYB D 66.4 9.4 0.00032 30.0 5.1 48 251-301 10-58 (73)
13 3sjm_A Telomeric repeat-bindin 61.9 16 0.00056 27.2 5.5 45 247-294 9-53 (64)
14 2elk_A SPCC24B10.08C protein; 59.6 10 0.00036 27.4 4.0 45 250-299 10-55 (58)
15 1guu_A C-MYB, MYB proto-oncoge 53.2 25 0.00085 24.3 4.9 46 249-299 3-48 (52)
16 2d9a_A B-MYB, MYB-related prot 52.4 39 0.0013 24.1 6.0 50 245-299 4-53 (60)
17 2eqr_A N-COR1, N-COR, nuclear 45.0 18 0.00063 26.4 3.3 45 245-295 8-52 (61)
18 1gvd_A MYB proto-oncogene prot 42.4 52 0.0018 22.7 5.2 46 249-299 3-48 (52)
19 1w0t_A Telomeric repeat bindin 38.1 70 0.0024 22.3 5.3 44 249-295 2-45 (53)
20 2aje_A Telomere repeat-binding 37.9 66 0.0023 26.5 5.9 55 243-303 7-63 (105)
21 2yqk_A Arginine-glutamic acid 36.2 31 0.0011 25.5 3.3 53 247-307 7-59 (63)
22 4eef_G F-HB80.4, designed hema 34.3 19 0.00065 28.8 2.0 45 250-297 21-66 (74)
23 2dim_A Cell division cycle 5-l 34.1 94 0.0032 22.7 5.7 48 247-299 7-54 (70)
24 2cjj_A Radialis; plant develop 33.1 40 0.0014 27.1 3.8 48 249-301 8-58 (93)
25 2crg_A Metastasis associated p 25.5 60 0.0021 24.5 3.4 47 245-296 4-50 (70)
26 2roh_A RTBP1, telomere binding 24.5 1.6E+02 0.0056 24.9 6.2 55 243-303 25-81 (122)
27 3b73_A PHIH1 repressor-like pr 21.1 1.2E+02 0.0042 24.7 4.7 50 249-302 7-56 (111)
28 1gv2_A C-MYB, MYB proto-oncoge 20.1 1.7E+02 0.006 22.5 5.2 46 249-299 4-49 (105)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.94 E-value=2.4e-28 Score=189.09 Aligned_cols=60 Identities=47% Similarity=0.790 Sum_probs=57.1
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccccc
Q 016225 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (393)
Q Consensus 244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~K~ 304 (393)
+.+|+||+||+|||++||+||++|| .++|+||+||++|+|+|||++||||||||||+..+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999 79999999999999999999999999999998754
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=89.67 E-value=0.71 Score=36.10 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=40.9
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccc
Q 016225 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (393)
Q Consensus 244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (393)
.....+-.||.|=+.+|++||+..|+- =+.|-+.|+ +=|..+|+.|-++|-
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 344456789999999999999999942 366777764 799999999988873
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.28 E-value=0.31 Score=39.52 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=37.1
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhh---c-C-------------CCcccHHHHHHhhccccccccc
Q 016225 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLEL---M-D-------------VKDLTLAHVKSHLQMYRTVKTT 305 (393)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel---M-n-------------V~GLTr~hVkSHLQKYRl~K~t 305 (393)
+..-+|.++|-..|++|++..- .. -+=|.+|.. | | -.-=|+.+|+||||.-|..+..
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 3456899999999999999774 11 111222311 1 1 0346888999999988766543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.98 E-value=1.7 Score=32.62 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCh---hHHHhhcCCCcccHHHHHHhhcccccc
Q 016225 248 PRMRWTTTLHARFVHAVELLGGHERATP---KSVLELMDVKDLTLAHVKSHLQMYRTV 302 (393)
Q Consensus 248 pRLrWT~ELH~rFV~AVeqLGG~dkAtP---K~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (393)
.+-.||.|=+++|+++|+.+| .+...| +.|-+.| +|=|..+|+.|-|+|-..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999 222112 3455554 689999999999998654
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=81.40 E-value=2.7 Score=31.55 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccc
Q 016225 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (393)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (393)
..+-.||.|=++.|+++|+.+|- .=+.|-.. |+|=|..+|+.|-++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999992 34566665 4789999999998887543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=75.08 E-value=3.2 Score=30.21 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=38.0
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCChhHHHhhcCCCcccHHHHHHhhcccc
Q 016225 246 RAPRMRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (393)
Q Consensus 246 kKpRLrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (393)
.-.|-.||+|=.+++++||+.+| +- =+.|-+.| +|=|..+|+.|-++|=
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHc
Confidence 34556799999999999999999 32 35566666 6788999998877664
No 7
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=73.76 E-value=6.2 Score=30.46 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=37.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChh---HHHhhcCCCcccHHHHHHhhcccccc
Q 016225 249 RMRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRTV 302 (393)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (393)
+-.||.|=.++|+.||..+++ -+|. +|-+.| |=|-++|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 447999999999999999983 3455 466666 57999999998777554
No 8
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=72.08 E-value=10 Score=29.38 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHh-hcCCCcccHHHHHHhhccccc
Q 016225 246 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLE-LMDVKDLTLAHVKSHLQMYRT 301 (393)
Q Consensus 246 kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILe-lMnV~GLTr~hVkSHLQKYRl 301 (393)
+..+-.||.|=..+|++||..+| +-+|.+--. ..-|+|=|-.+|+.|-+.+..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34455799999999999999998 236765443 233479999999999776643
No 9
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=70.31 E-value=11 Score=27.83 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=41.2
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (393)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (393)
...++.|-.||+|=-.+.+++|+.+|. -.=+.|.+.|...|=|-.+|+-+-..|
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 446678889999999999999999991 133677788865578888888664444
No 10
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=68.39 E-value=5.5 Score=40.71 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccccccc
Q 016225 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 303 (393)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~K 303 (393)
+..-+||.|=|..|++||.+.|- -=+.|-+.++- =|..+|++|-++||...
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence 45689999999999999999982 35677777664 48999999999999754
No 11
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=67.79 E-value=7.2 Score=36.87 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=43.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccc
Q 016225 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (393)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (393)
..+..-+||+|=++.|++|+...| -+ =..|-++ |.+=|..+|+.|-.+||..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KD---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RD---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SC---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 446677999999999999999999 22 4567666 6789999999999999864
No 12
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=66.38 E-value=9.4 Score=29.99 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChhHHHh-hcCCCcccHHHHHHhhccccc
Q 016225 251 RWTTTLHARFVHAVELLGGHERATPKSVLE-LMDVKDLTLAHVKSHLQMYRT 301 (393)
Q Consensus 251 rWT~ELH~rFV~AVeqLGG~dkAtPK~ILe-lMnV~GLTr~hVkSHLQKYRl 301 (393)
.||.+=..+|.+|+..++ +.+|-+--. ..-|+|=|.++|..|-+....
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 599999999999999987 447775543 334678999999987555433
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=61.91 E-value=16 Score=27.16 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=34.7
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHH
Q 016225 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKS 294 (393)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkS 294 (393)
+.|-.||+|=-++.+++|++.|. -.=+.|.+.+.+.|=|-.+++-
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~ 53 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKD 53 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHH
Confidence 34567999999999999999992 1245778877777888888873
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=59.63 E-value=10 Score=27.38 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=33.7
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225 250 MRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (393)
Q Consensus 250 LrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (393)
-.||+|=.+++++||++.| +- =+.|-+.|+. +=|..+++.|-++|
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHH
Confidence 3699999999999999999 43 3455555532 67888888876655
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=53.22 E-value=25 Score=24.32 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=34.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (393)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (393)
|-.||+|=..+++++|+++|. ..=+.|-+.| +|=|-.+|+.+-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 2345666665 577888888765544
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=52.44 E-value=39 Score=24.06 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=36.6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (393)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (393)
....|-.||+|=.++++++|+++|- -.=+.|-+.| +|=|-.+|+.+-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456678999999999999999982 1234565554 577888888776555
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.02 E-value=18 Score=26.39 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=33.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHh
Q 016225 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 295 (393)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSH 295 (393)
.|+..-.||+|=|+.|++|+.+.|- + =..|-.+ |++=|..+|..+
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk--~--w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK--N--FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT--C--HHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHH
Confidence 3456678999999999999999982 2 2456544 467888888754
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=42.40 E-value=52 Score=22.71 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=33.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (393)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (393)
|-.||+|=..+++++|++.|- ..=+.|.+.| +|=|..+|+.+-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999982 1224555555 577888888765554
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=38.08 E-value=70 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=33.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHh
Q 016225 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 295 (393)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSH 295 (393)
|-.||+|=.+..+++|+..|. -.=+.|.+.|+..|=|-.+++-+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~R 45 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDR 45 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHH
Confidence 457999999999999999992 13366777776557777777754
No 20
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=37.93 E-value=66 Score=26.55 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=40.2
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcC--CCcccHHHHHHhhccccccc
Q 016225 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHLQMYRTVK 303 (393)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~GLTr~hVkSHLQKYRl~K 303 (393)
...++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|--+||- |||...
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKd---rWrnll 63 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKD---KWKTLV 63 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHH---HHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence 457788999999999999999999992 12346777552 37888888884 455543
No 21
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.16 E-value=31 Score=25.53 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccccccCc
Q 016225 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDR 307 (393)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~K~td~ 307 (393)
..+-.||+|=+++|.+|+.+.| -+ =..|...| |+.-|..+|..+ |=..|++++
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f---YY~wKkt~~ 59 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF---YYYWKKTSG 59 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH---HHHHHCSSC
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH---HhcccCCCC
Confidence 3456899999999999999999 22 23443311 566777777643 444555543
No 22
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=34.28 E-value=19 Score=28.75 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.3
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChhHHHhh-cCCCcccHHHHHHhhc
Q 016225 250 MRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQ 297 (393)
Q Consensus 250 LrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVkSHLQ 297 (393)
-.||.|=.+.|..|+...+ +-+|.+--.+ --|+|=|.+.|+.|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3699999999999999886 4566654332 3357999999999865
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.15 E-value=94 Score=22.74 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (393)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (393)
..|-.||+|=-++++++|.++|- ..=+.|-+.|+ |=|..+|+-+-..|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34558999999999999999991 23466777765 78888898776655
No 24
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=33.11 E-value=40 Score=27.13 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=37.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChh---HHHhhcCCCcccHHHHHHhhccccc
Q 016225 249 RMRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRT 301 (393)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVkSHLQKYRl 301 (393)
.-.||.|=.+.|++||..+| . -+|. +|-+.| +|=|-++|+.|-+++..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD-K--DTPDRWANVARAV--EGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHS--TTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 34699999999999999998 2 2554 444444 69999999999887654
No 25
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.55 E-value=60 Score=24.51 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=33.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhh
Q 016225 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (393)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHL 296 (393)
.++..-.||+|=+..|.+|+...| -+ =..|-.. -|++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 456667899999999999999999 22 2344331 15677777777554
No 26
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=24.52 E-value=1.6e+02 Score=24.86 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=40.6
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhc--CCCcccHHHHHHhhccccccc
Q 016225 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM--DVKDLTLAHVKSHLQMYRTVK 303 (393)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelM--nV~GLTr~hVkSHLQKYRl~K 303 (393)
...+|.|-.||+|=-+..+++|+++|. -.=+.|++.+ ..+|=|--++| .|||...
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlK---dRWrnll 81 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLK---DKWKTLV 81 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHH---HHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHH---HHHHHHH
Confidence 457788899999999999999999992 1234666654 34788888888 4566543
No 27
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=21.14 E-value=1.2e+02 Score=24.65 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=39.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhcccccc
Q 016225 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (393)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (393)
+..|-...-++.++.+..-| .++|+.|-+.+++ |+|+..|..||++-...
T Consensus 7 ~~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Confidence 35688888888888887777 6899999886622 67999999999987654
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=20.09 E-value=1.7e+02 Score=22.50 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=34.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCcccHHHHHHhhccc
Q 016225 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (393)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (393)
+-.||+|=-++++++|+..|.. .=+.|-+.| +|=|..+|+.+-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 4479999999999999999831 234666666 688888888766554
Done!