BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016226
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGP|A Chain A, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|B Chain B, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|C Chain C, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|D Chain D, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|E Chain E, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|F Chain F, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
Length = 393
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/393 (78%), Positives = 351/393 (89%)
Query: 1 MPGLTAPSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVD 60
MPG+ PS YSQEPPRHP L++N+KEPFNAEPPRSAL+SSYVTPVD FYKRNHGPIPIVD
Sbjct: 1 MPGIRGPSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPVDLFYKRNHGPIPIVD 60
Query: 61 DIESYYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVS 120
++SY V++ GLI+N + LF++DIR L KYN+TATLQCAGNRRTAMS VR V+GVGWDVS
Sbjct: 61 HLQSYSVTLTGLIQNPRKLFIKDIRSLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVS 120
Query: 121 AIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQA 180
AIGNAVW GAKLADVLELVGIP LT+ T G +HVEFVS+D+CKEENGGPYKASI LSQA
Sbjct: 121 AIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDRCKEENGGPYKASITLSQA 180
Query: 181 TNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD 240
TNPEADVLLAYEMNGE LNRDHG+PLRVVVPGVIGARSVKWLD+IN++AEE QGFFMQKD
Sbjct: 181 TNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKD 240
Query: 241 YKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIER 300
YKMFPPSVNWDNINW SRRP MDFPVQ ICS+EDV ++KPGK + GYAVSGGGRGIER
Sbjct: 241 YKMFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIER 300
Query: 301 VDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAA 360
VDIS+DGGKNWVEASR Q+ G YI++H SSDKWAWV FE ID+ +T+++AKAVD+AA
Sbjct: 301 VDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAA 360
Query: 361 NVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM 393
NVQPE+VE++WNLRGVLNTSWHRV +R+GHSN+
Sbjct: 361 NVQPENVESVWNLRGVLNTSWHRVLLRLGHSNL 393
>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
At Resting State
pdb|2A9A|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
pdb|2A9A|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
Length = 372
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/382 (46%), Positives = 238/382 (62%), Gaps = 17/382 (4%)
Query: 10 YSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSI 69
++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY + +
Sbjct: 3 FAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSYRLRV 61
Query: 70 CGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWS 128
G + L + ++R K+ +TATLQCAGNRR+ MS VR VKG+ WD+ AI A W
Sbjct: 62 DGPGGGTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWG 121
Query: 129 GAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVL 188
GA+L DVL G P G HV F +D + G PY ASIP +A +P ADVL
Sbjct: 122 GARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVL 175
Query: 189 LAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSV 248
LAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V
Sbjct: 176 LAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCV 235
Query: 249 NWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG
Sbjct: 236 DWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGG 295
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPES 366
+ W A P A WAW +E+ + + T +IV KAVD++ NVQP+S
Sbjct: 296 RTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDS 348
Query: 367 VETIWNLRGVLNTSWHRVQVRV 388
V IWNLRGVL+T+WHRV+V V
Sbjct: 349 VAPIWNLRGVLSTAWHRVRVSV 370
>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
pdb|2A9D|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
Length = 372
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/382 (46%), Positives = 238/382 (62%), Gaps = 17/382 (4%)
Query: 10 YSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSI 69
++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY + +
Sbjct: 3 FAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSYRLRV 61
Query: 70 CGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWS 128
G + L + ++R K+ +TATLQCAGNRR+ MS VR VKG+ WD+ AI A W
Sbjct: 62 DGPGGRTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWG 121
Query: 129 GAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVL 188
GA+L DVL G P G HV F +D + G PY ASIP +A +P ADVL
Sbjct: 122 GARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVL 175
Query: 189 LAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSV 248
LAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V
Sbjct: 176 LAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCV 235
Query: 249 NWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG
Sbjct: 236 DWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGG 295
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPES 366
+ W A P A WAW +E+ + + T +IV KAVD++ NVQP+S
Sbjct: 296 RTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDS 348
Query: 367 VETIWNLRGVLNTSWHRVQVRV 388
V IWNLRGVL+T+WHRV+V V
Sbjct: 349 VAPIWNLRGVLSTAWHRVRVSV 370
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/386 (45%), Positives = 239/386 (61%), Gaps = 17/386 (4%)
Query: 6 APSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESY 65
A ++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY
Sbjct: 93 AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSY 151
Query: 66 YVSICGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGN 124
+ + G + L + ++R K+ +TATLQCAGNRR+ MS VR VKG+ WD+ AI
Sbjct: 152 RLRVDGPGGGTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAIST 211
Query: 125 AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 184
A W GA+L DVL G P G HV F +D + G PY ASIP +A +P
Sbjct: 212 ARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPA 265
Query: 185 ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 244
ADVLLAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F
Sbjct: 266 ADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGF 325
Query: 245 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 304
P V+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S
Sbjct: 326 SPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVS 385
Query: 305 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANV 362
+DGG+ W A P A WAW +E+ + + T +IV KAVD++ NV
Sbjct: 386 LDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNV 438
Query: 363 QPESVETIWNLRGVLNTSWHRVQVRV 388
QP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 439 QPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 310 bits (794), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 176/386 (45%), Positives = 239/386 (61%), Gaps = 17/386 (4%)
Query: 6 APSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESY 65
A ++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY
Sbjct: 93 AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSY 151
Query: 66 YVSICGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGN 124
+ + G + L + ++R K+ +TATLQCAGNRR+ MS VR VKG+ WD+ AI
Sbjct: 152 RLRVDGPGGGTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAIST 211
Query: 125 AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 184
A W GA+L DVL G P G HV F +D + G PY ASIP +A +P
Sbjct: 212 ARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPA 265
Query: 185 ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 244
ADVLLAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q D+K F
Sbjct: 266 ADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDFKGF 325
Query: 245 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 304
P V+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S
Sbjct: 326 SPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVS 385
Query: 305 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANV 362
+DGG+ W A P A WAW +E+ + + T +IV KAVD++ NV
Sbjct: 386 LDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNV 438
Query: 363 QPESVETIWNLRGVLNTSWHRVQVRV 388
QP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 439 QPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite
Oxidase At Resting State
pdb|2A9C|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
pdb|2A9C|B Chain B, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
Length = 372
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/382 (45%), Positives = 238/382 (62%), Gaps = 17/382 (4%)
Query: 10 YSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSI 69
++ +PPRHP L++NS++PFNAEPP L ++TP + F+ +NH P+P V+ SY + +
Sbjct: 3 FAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTQNHLPVPAVEP-SSYRLRV 61
Query: 70 CGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWS 128
G + L + ++R K+ +TATLQCAGNRR+ MS VR VKG+ WD+ AI A W
Sbjct: 62 DGPGGGTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWG 121
Query: 129 GAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVL 188
GA+L DVL G P G HV F +D + G PY ASIP +A +P ADVL
Sbjct: 122 GARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVL 175
Query: 189 LAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSV 248
LAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V
Sbjct: 176 LAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCV 235
Query: 249 NWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG
Sbjct: 236 DWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGG 295
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPES 366
+ W A P A WAW +E+ + + T +IV KAVD++ NVQP+S
Sbjct: 296 RTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDS 348
Query: 367 VETIWNLRGVLNTSWHRVQVRV 388
V IWNLRGVL+T+WHRV+V V
Sbjct: 349 VAPIWNLRGVLSTAWHRVRVSV 370
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 176/386 (45%), Positives = 238/386 (61%), Gaps = 17/386 (4%)
Query: 6 APSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESY 65
A ++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY
Sbjct: 93 AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSY 151
Query: 66 YVSICGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGN 124
+ + G + L + ++R K+ +TATLQ AGNRR+ MS VR VKG+ WD+ AI
Sbjct: 152 RLRVDGPGGGTLSLSLAELRSRFPKHEVTATLQAAGNRRSEMSRVRPVKGLPWDIGAIST 211
Query: 125 AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 184
A W GA+L DVL G P G HV F +D + G PY ASIP +A +P
Sbjct: 212 ARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPA 265
Query: 185 ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 244
ADVLLAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F
Sbjct: 266 ADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGF 325
Query: 245 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 304
P V+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S
Sbjct: 326 SPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVS 385
Query: 305 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANV 362
+DGG+ W A P A WAW +E+ + + T +IV KAVD++ NV
Sbjct: 386 LDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNV 438
Query: 363 QPESVETIWNLRGVLNTSWHRVQVRV 388
QP+SV IWNLRGVL+T+WHRV+V V
Sbjct: 439 QPDSVAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 308 bits (788), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/382 (45%), Positives = 237/382 (62%), Gaps = 17/382 (4%)
Query: 10 YSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSI 69
++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY + +
Sbjct: 97 FAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSYRLRV 155
Query: 70 CGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWS 128
G + L + ++R K+ +TATLQ AGNRR+ MS VR VKG+ WD+ AI A W
Sbjct: 156 DGPGGGTLSLSLAELRSRFPKHEVTATLQSAGNRRSEMSRVRPVKGLPWDIGAISTARWG 215
Query: 129 GAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVL 188
GA+L DVL G P G HV F +D + G PY ASIP +A +P ADVL
Sbjct: 216 GARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPAADVL 269
Query: 189 LAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSV 248
LAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q DYK F P V
Sbjct: 270 LAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCV 329
Query: 249 NWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S+DGG
Sbjct: 330 DWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGG 389
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPES 366
+ W A P A WAW +E+ + + T +IV KAVD++ NVQP+S
Sbjct: 390 RTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDS 442
Query: 367 VETIWNLRGVLNTSWHRVQVRV 388
V IWNLRGVL+T+WHRV+V V
Sbjct: 443 VAPIWNLRGVLSTAWHRVRVSV 464
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 175/386 (45%), Positives = 237/386 (61%), Gaps = 17/386 (4%)
Query: 6 APSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESY 65
A ++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY
Sbjct: 93 AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSY 151
Query: 66 YVSICGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGN 124
+ + G + L + ++R K+ +TATLQCAGNRR+ MS VR VKG+ WD+ AI
Sbjct: 152 RLRVDGPGGGTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAIST 211
Query: 125 AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 184
A W GA+L DVL G P G HV F +D + G PY ASIP +A +P
Sbjct: 212 ARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPA 265
Query: 185 ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 244
ADVLLAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q D K F
Sbjct: 266 ADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDNKGF 325
Query: 245 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 304
P V+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S
Sbjct: 326 SPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVS 385
Query: 305 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANV 362
+DGG+ W A P A WAW +E+ + + T +IV KAVD++ NV
Sbjct: 386 LDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNV 438
Query: 363 QPESVETIWNLRGVLNTSWHRVQVRV 388
QP+SV IWNL GVL+T+WHRV+V V
Sbjct: 439 QPDSVAPIWNLMGVLSTAWHRVRVSV 464
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 304 bits (778), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 174/386 (45%), Positives = 237/386 (61%), Gaps = 17/386 (4%)
Query: 6 APSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESY 65
A ++ +PPRHP L++NS++PFNAEPP L ++TP + F+ RNH P+P V+ SY
Sbjct: 93 AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEP-SSY 151
Query: 66 YVSICGLIENSKDLFMRDIR-MLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGN 124
+ + G + L + ++R K+ +TATLQCAGNRR+ MS VR VKG+ WD+ AI
Sbjct: 152 RLRVDGPGGGTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAIST 211
Query: 125 AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPE 184
A W GA+L DVL G P G HV F +D + G PY ASIP +A +P
Sbjct: 212 ARWGGARLRDVLLHAGFPE----ELQGEWHVCFEGLDA--DPGGAPYGASIPYGRALSPA 265
Query: 185 ADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 244
ADVLLAYEMNG L RDHG+P+RVVVPGV+GARSVKWL + + +E + Q D K F
Sbjct: 266 ADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDNKGF 325
Query: 245 PPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDIS 304
P V+WD +++++ + + PVQ + + PG+ V GYA SGGGR + RVD+S
Sbjct: 326 SPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVS 385
Query: 305 VDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANV 362
+DGG+ W A P A WAW +E+ + + T +IV KAVD++ NV
Sbjct: 386 LDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNV 438
Query: 363 QPESVETIWNLRGVLNTSWHRVQVRV 388
QP+SV IWNL G+L+T+WHRV+V V
Sbjct: 439 QPDSVAPIWNLMGMLSTAWHRVRVSV 464
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 203/400 (50%), Gaps = 39/400 (9%)
Query: 19 ILQINSKEPFNAEPPRSALISS-YVTPVDFFYKRNHGPIPIVDD--IESYYVSICGLIEN 75
+L++ PFN+EPP + L S ++TPV + RNHGP+P V D I + VSI G++E
Sbjct: 46 LLRLTGSHPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEGMVET 105
Query: 76 SKDLFMRDI-RMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLAD 134
+ + DI Y+ T+ CAGNRR + V+ G W + ++W+G L D
Sbjct: 106 PYKIKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGD 165
Query: 135 VLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMN 194
V+ K FV ++ G Y I LS +PE +++AY+ N
Sbjct: 166 VIG----------KARPSKRARFVWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQN 215
Query: 195 GEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVN----- 249
GE L+ DHG PLRVV+PGVIG RSVKWL + + + ++ D ++ P V
Sbjct: 216 GEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAK 275
Query: 250 WDNINWKSRR-PLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGGRGIERVDISVD 306
D+ WK R + D +Q +IC E+ V+K + +++G+ +GGG I R+++S+D
Sbjct: 276 SDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLD 335
Query: 307 GGKNWVEA------SRYQKT-------GIPYIADHMSSDKWAWVFFEV-IIDIPHSTQIV 352
GK+W A RY++ G+ + D MS W + +V + ++ S I+
Sbjct: 336 KGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDIL 395
Query: 353 AKAVDTAANVQPESVETIWNLRGVLNTSWHRVQ-VRVGHS 391
+ +D VQP ++ WN+ +LN W+RV +R G S
Sbjct: 396 IRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGES 433
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 199/393 (50%), Gaps = 39/393 (9%)
Query: 26 EPFNAEPPRSALI-SSYVTPVDFFYKRNHGPIPIVDD--IESYYVSICGLIENSKDLFMR 82
PFN+EPP + L S ++TPV + RNHGP+P V D I + VSI G++E + +
Sbjct: 3 HPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEGMVETPYKIKLS 62
Query: 83 DI-RMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGI 141
DI Y+ T+ CAGNRR + V+ G W + ++W+G L DV+
Sbjct: 63 DIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIG---- 118
Query: 142 PNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRD 201
K FV ++ G Y I LS +PE +++AY+ NGE L+ D
Sbjct: 119 ------KARPSKRARFVWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPD 172
Query: 202 HGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVN-----WDNINWK 256
HG PLRVV+PGVIG RSVKWL + + + ++ D ++ P V D+ WK
Sbjct: 173 HGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWK 232
Query: 257 SRR-PLMDFPVQCVICSLEDVNVMK--PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVE 313
R + D +Q +IC E+ V+K + +++G+ +GGG I R+++S+D GK+W
Sbjct: 233 DERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKL 292
Query: 314 A------SRYQKT-------GIPYIADHMSSDKWAWVFFEV-IIDIPHSTQIVAKAVDTA 359
A RY++ G+ + D MS W + +V + ++ S I+ + +D
Sbjct: 293 ADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDER 352
Query: 360 ANVQPESVETIWNLRGVLNTSWHRVQ-VRVGHS 391
VQP ++ WN+ +LN W+RV +R G S
Sbjct: 353 MMVQPRTM--YWNVTSMLNNWWYRVAIIREGES 383
>pdb|2BLF|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
pdb|2BPB|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
Length = 373
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 174/370 (47%), Gaps = 33/370 (8%)
Query: 14 PPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNH-GPIPIVDDIESYYVSICGL 72
P + P++ + ++ P E P S +TP D F+ R H IP+ D +++ + I G
Sbjct: 19 PGKRPLIGLTARPP-QLETPFSVFDEGLITPNDAFFVRYHLAGIPLEIDPDAFRLEIKGK 77
Query: 73 IENSKDLFMRDIRM-LRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAK 131
+ L ++D++ + A QC+GN R + V G A+GNA W G
Sbjct: 78 VGTPLSLSLQDLKNDFPASEVVAVNQCSGNSRGFVEP--RVGGGQLANGAMGNARWRGVP 135
Query: 132 LADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAY 191
L VLE G+ ++G K V F +D + ++ + AT+ E V+LAY
Sbjct: 136 LKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDGE--VMLAY 186
Query: 192 EMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWD 251
MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ Y++ P +
Sbjct: 187 SMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI-PDNACAC 245
Query: 252 NINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
K+ P+ F V+ I ++E+ +K G+ + G A GG GI +V +S D G
Sbjct: 246 TEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAG 304
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESV 367
K+W A+ G K+++ ++ ++ + ++ +A + QP +
Sbjct: 305 KSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNARGETQP--M 351
Query: 368 ETIWNLRGVL 377
+ WN G +
Sbjct: 352 QATWNPAGYM 361
>pdb|2C9X|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Y236f Mutant
Length = 373
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 174/370 (47%), Gaps = 33/370 (8%)
Query: 14 PPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNH-GPIPIVDDIESYYVSICGL 72
P + P++ + ++ P E P S +TP D F+ R H IP+ D +++ + I G
Sbjct: 19 PGKRPLIGLTARPP-QLETPFSVFDEGLITPNDAFFVRYHLAGIPLEIDPDAFRLEIKGK 77
Query: 73 IENSKDLFMRDIRM-LRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAK 131
+ L ++D++ + A QC+GN R + V G A+GNA W G
Sbjct: 78 VGTPLSLSLQDLKNDFPASEVVAVNQCSGNSRGFVEP--RVGGGQLANGAMGNARWRGVP 135
Query: 132 LADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAY 191
L VLE G+ ++G K V F +D + ++ + AT+ E V+LAY
Sbjct: 136 LKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDGE--VMLAY 186
Query: 192 EMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWD 251
MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ +++ P +
Sbjct: 187 SMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAFRI-PDNACAC 245
Query: 252 NINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
K+ P+ F V+ I ++E+ +K G+ + G A GG GI +V +S D G
Sbjct: 246 TEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAG 304
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESV 367
K+W A+ G K+++ ++ ++ + ++ +A + QP +
Sbjct: 305 KSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNARGETQP--M 351
Query: 368 ETIWNLRGVL 377
+ WN G +
Sbjct: 352 QATWNPAGYM 361
>pdb|2CA3|A Chain A, Sulfite Dehydrogenase From Starkeya Novella R55m Mutant
Length = 373
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 173/370 (46%), Gaps = 33/370 (8%)
Query: 14 PPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNH-GPIPIVDDIESYYVSICGL 72
P + P++ + ++ P E P S +TP D F+ H IP+ D +++ + I G
Sbjct: 19 PGKRPLIGLTARPP-QLETPFSVFDEGLITPNDAFFVMYHLAGIPLEIDPDAFRLEIKGK 77
Query: 73 IENSKDLFMRDIRM-LRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAK 131
+ L ++D++ + A QC+GN R + V G A+GNA W G
Sbjct: 78 VGTPLSLSLQDLKNDFPASEVVAVNQCSGNSRGFVE--PRVGGGQLANGAMGNARWRGVP 135
Query: 132 LADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAY 191
L VLE G+ ++G K V F +D + ++ + AT+ E V+LAY
Sbjct: 136 LKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDGE--VMLAY 186
Query: 192 EMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWD 251
MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ Y++ P +
Sbjct: 187 SMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI-PDNACAC 245
Query: 252 NINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
K+ P+ F V+ I ++E+ +K G+ + G A GG GI +V +S D G
Sbjct: 246 TEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAG 304
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESV 367
K+W A+ G K+++ ++ ++ + ++ +A + QP +
Sbjct: 305 KSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNARGETQP--M 351
Query: 368 ETIWNLRGVL 377
+ WN G +
Sbjct: 352 QATWNPAGYM 361
>pdb|2CA4|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Mutant
Length = 373
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 173/370 (46%), Gaps = 33/370 (8%)
Query: 14 PPRHPILQINSKEPFNAEPPRSALISSYVTPVD-FFYKRNHGPIPIVDDIESYYVSICGL 72
P + P++ + ++ P E P S +TP D FF + IP+ D +++ + I G
Sbjct: 19 PGKRPLIGLTARPP-QLETPFSVFDEGLITPNDAFFVRYALAGIPLEIDPDAFRLEIKGK 77
Query: 73 IENSKDLFMRDIRM-LRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAK 131
+ L ++D++ + A QC+GN R + V G A+GNA W G
Sbjct: 78 VGTPLSLSLQDLKNDFPASEVVAVNQCSGNSRGFVEP--RVGGGQLANGAMGNARWRGVP 135
Query: 132 LADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAY 191
L VLE G+ ++G K V F +D + ++ + AT+ E V+LAY
Sbjct: 136 LKAVLEKAGV-------QAGAKQVTFGGLDGPVIPETPDFVKALSIDHATDGE--VMLAY 186
Query: 192 EMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWD 251
MNG L +GYPLR+VVPG G VK L+ I ++ +E GF+M+ Y++ P +
Sbjct: 187 SMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI-PDNACAC 245
Query: 252 NINWKSRR---PLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGG 308
K+ P+ F V+ I ++E+ +K G+ + G A GG GI +V +S D G
Sbjct: 246 TEPGKAPTATIPINRFDVRSFITNVENGASVKAGEVPLRGIAFD-GGYGITQVSVSADAG 304
Query: 309 KNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIV-AKAVDTAANVQPESV 367
K+W A+ G K+++ ++ ++ + ++ +A + QP +
Sbjct: 305 KSWTNATLDPGLG-----------KYSFRGWKAVLPLTKGDHVLMCRATNARGETQP--M 351
Query: 368 ETIWNLRGVL 377
+ WN G +
Sbjct: 352 QATWNPAGYM 361
>pdb|2XTS|A Chain A, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
pdb|2XTS|C Chain C, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
Length = 390
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 145/332 (43%), Gaps = 44/332 (13%)
Query: 38 ISSYVTPVDFFYKRNH-GPIPIVDDIESYYVSICGLIENSKDLFMRDIRMLRKYNITATL 96
+ +TP ++R+H G I + + Y + I GL+E D+ + TA
Sbjct: 61 LEGTITPQGCAFERHHSGAIELSK--QDYRLMINGLVEKPLVFTFEDLLRFPRTTTTAFC 118
Query: 97 QCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGK-HV 155
+CA N G+ W + + ++ + + +E VG+P + +G K
Sbjct: 119 ECAAN-----------GGMEWGGAQLEGCQYTQGMIHN-MEYVGVPLSVLLAEAGVKPEG 166
Query: 156 EFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIG 215
+++ + + G S P+ + + DV+LA+ NGE L ++HGYP R+VVPG G
Sbjct: 167 KWLYAEGADASSNG---RSFPMEKVMD---DVMLAFFANGEALRKEHGYPARLVVPGWEG 220
Query: 216 ARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLED 275
VKW+ + I + + Y P W +MD + VI S
Sbjct: 221 NMWVKWVRRLGIYDKAVESREETSKYTDLMPDGRARKWTW-----VMD--AKSVITSPSP 273
Query: 276 VNVMKPGKAK--VSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK 333
++ GK +SG A SG GR I RVD+S+DGGKNW A R +P
Sbjct: 274 QVPIRHGKGPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTA-RITGQALPK--------- 322
Query: 334 WAWVFFEVIIDIPHSTQIV-AKAVDTAANVQP 364
A F + ID S ++ ++AVD VQP
Sbjct: 323 -ALTRFHLDIDWDGSEMLLQSRAVDETGYVQP 353
>pdb|1XDQ|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDY|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|F Chain F, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|G Chain G, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|H Chain H, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|I Chain I, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|J Chain J, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
Length = 298
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 127 WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGG-----------PYKASI 175
W G L +L L + S K+V F +I ++ G PY +
Sbjct: 112 WIGFPLHKLLAL-------AEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGL 164
Query: 176 PLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAE 230
L +A +P L+ + G+ L +G P+R++VP G + +K + +I + E
Sbjct: 165 RLDEAMHPL--TLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRE 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,643,423
Number of Sequences: 62578
Number of extensions: 528071
Number of successful extensions: 1511
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 26
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)