Query 016226
Match_columns 393
No_of_seqs 218 out of 1748
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0535 Sulfite oxidase, molyb 100.0 4E-116 8E-121 831.2 24.5 376 2-390 1-381 (381)
2 PLN00177 sulfite oxidase; Prov 100.0 6E-110 1E-114 840.1 41.7 393 1-393 1-393 (393)
3 cd02112 eukary_NR_Moco molybdo 100.0 7E-101 2E-105 772.9 37.6 368 4-386 2-386 (386)
4 cd02111 eukary_SO_Moco molybdo 100.0 2.1E-99 4E-104 758.5 35.9 359 19-388 1-365 (365)
5 PLN02252 nitrate reductase [NA 100.0 6.2E-98 1E-102 816.5 38.7 372 4-390 75-462 (888)
6 cd02114 bact_SorA_Moco sulfite 100.0 2.2E-95 5E-100 729.9 37.8 357 3-386 3-367 (367)
7 cd02113 bact_SoxC_Moco bacteri 100.0 4.8E-90 1E-94 680.3 34.1 317 34-389 2-324 (326)
8 cd02110 SO_family_Moco_dimer S 100.0 1.9E-86 4.2E-91 655.2 33.0 315 47-386 1-317 (317)
9 cd02107 YedY_like_Moco YedY_li 100.0 1.3E-48 2.8E-53 363.8 17.2 186 45-271 12-213 (218)
10 cd02108 bact_SO_family_Moco ba 100.0 1.5E-45 3.3E-50 337.8 18.3 171 39-244 7-184 (185)
11 PF00174 Oxidored_molyb: Oxido 100.0 6.1E-46 1.3E-50 336.4 14.0 169 51-238 1-169 (169)
12 cd02109 arch_bact_SO_family_Mo 100.0 5.7E-45 1.2E-49 333.0 18.6 165 45-245 8-172 (180)
13 PRK05363 TMAO/DMSO reductase; 100.0 1.1E-42 2.5E-47 338.3 17.5 197 41-271 73-285 (319)
14 cd00321 SO_family_Moco Sulfite 100.0 6.4E-38 1.4E-42 280.5 16.6 155 49-230 1-156 (156)
15 PF03404 Mo-co_dimer: Mo-co ox 100.0 2.1E-37 4.5E-42 269.4 12.4 125 259-389 2-131 (131)
16 COG2041 Sulfite oxidase and re 100.0 6.4E-37 1.4E-41 296.2 13.5 172 39-244 66-241 (271)
17 COG3915 Uncharacterized protei 99.6 1.2E-14 2.6E-19 124.5 10.5 121 66-227 25-154 (155)
18 PF02012 BNR: BNR/Asp-box repe 95.8 0.0062 1.4E-07 31.4 1.5 11 303-313 2-12 (12)
19 PF10648 Gmad2: Immunoglobulin 88.9 4.3 9.3E-05 33.0 9.0 78 269-360 4-85 (88)
20 PF15418 DUF4625: Domain of un 85.6 6.4 0.00014 34.4 8.8 83 272-365 25-125 (132)
21 PF13754 Big_3_4: Bacterial Ig 85.0 1.1 2.4E-05 32.8 3.2 28 338-365 13-42 (54)
22 cd00260 Sialidase Sialidases o 69.1 13 0.00029 36.7 6.7 52 267-318 142-193 (351)
23 cd02847 Chitobiase_C_term Chit 67.4 13 0.00028 29.6 5.0 37 273-315 13-49 (78)
24 PF06594 HCBP_related: Haemoly 60.3 7.8 0.00017 26.9 2.2 32 283-316 12-43 (43)
25 PF05547 Peptidase_M6: Immune 51.3 27 0.00059 38.4 5.6 54 297-354 383-439 (645)
26 PF12245 Big_3_2: Bacterial Ig 48.5 17 0.00037 27.1 2.6 27 338-364 11-40 (60)
27 COG4719 Uncharacterized protei 46.9 10 0.00022 33.9 1.3 32 279-314 96-128 (176)
28 TIGR02807 cas6_var CRISPR-asso 42.3 9.7 0.00021 35.4 0.4 20 187-206 4-23 (190)
29 PF08770 SoxZ: Sulphur oxidati 41.7 42 0.0009 27.9 4.1 53 297-363 42-94 (100)
30 PF03422 CBM_6: Carbohydrate b 41.4 1.5E+02 0.0032 24.5 7.6 67 281-360 44-113 (125)
31 PF13750 Big_3_3: Bacterial Ig 38.3 39 0.00084 30.3 3.7 27 338-364 2-33 (158)
32 PF14870 PSII_BNR: Photosynthe 37.5 23 0.00049 35.3 2.2 20 300-319 254-273 (302)
33 PF13750 Big_3_3: Bacterial Ig 36.6 2.4E+02 0.0052 25.2 8.5 60 297-366 81-142 (158)
34 PF01357 Pollen_allerg_1: Poll 34.1 2E+02 0.0043 22.7 6.8 28 289-316 18-45 (82)
35 PF09559 Cas6: Cas6 Crispr; I 32.8 16 0.00034 34.2 0.2 18 189-206 3-20 (195)
36 PF07495 Y_Y_Y: Y_Y_Y domain; 32.5 63 0.0014 23.6 3.5 26 340-365 30-57 (66)
37 cd00260 Sialidase Sialidases o 30.5 1.9E+02 0.0041 28.5 7.5 22 298-319 222-243 (351)
38 PF03370 CBM_21: Putative phos 29.8 1.7E+02 0.0037 24.4 6.1 82 265-357 8-96 (113)
39 PF09937 DUF2169: Uncharacteri 29.6 87 0.0019 31.0 4.9 35 275-309 52-87 (297)
40 PF13088 BNR_2: BNR repeat-lik 29.1 98 0.0021 29.1 5.1 37 281-318 118-154 (275)
41 PF08381 BRX: Transcription fa 25.1 70 0.0015 24.2 2.5 23 281-305 12-35 (59)
42 PF11797 DUF3324: Protein of u 23.0 1.6E+02 0.0035 25.6 4.9 34 262-295 84-119 (140)
No 1
>KOG0535 consensus Sulfite oxidase, molybdopterin-binding component [Energy production and conversion]
Probab=100.00 E-value=3.6e-116 Score=831.17 Aligned_cols=376 Identities=52% Similarity=0.938 Sum_probs=355.1
Q ss_pred CCCCCCCCCCCCCCCCCceeecCCCCCCCCCCccCccCCCCcCCCCceEeccCCCCcccCCCCeEEEEEeccCCceeecH
Q 016226 2 PGLTAPSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFM 81 (393)
Q Consensus 2 ~~~~~~~~~~~~p~r~~~l~~~~~~P~n~e~p~~~l~~~~iTP~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl 81 (393)
|+..+||.|.+||.|||.|.+++++|||||||++.|+++||||+++||+|||+++|.++. ++|+|+|+|++.+|++||+
T Consensus 1 p~~~~~d~~s~dp~Rhp~Lkv~~k~PFNAE~P~~~L~~~fiTP~~LfyvRNH~pVP~~~~-~~~~l~v~g~~~~~~~lt~ 79 (381)
T KOG0535|consen 1 PSILDPDEYSQDPERHPALKVNSKRPFNAEPPPSLLTEHFITPNPLFYVRNHLPVPKIDP-EDYSLEVTGLGGKPRKLTL 79 (381)
T ss_pred CCcCCccccccCcccCcceeccCCCCCCCCCChhHHHhhccCCcceeEeeccCCCCccCc-hhcEEEEEecCCCCceeeH
Confidence 456789999999999999999999999999999999999999999999999999999986 9999999999999999999
Q ss_pred HHHhcCccEeEEEEEEeecCCcccccccccccccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEcc
Q 016226 82 RDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID 161 (393)
Q Consensus 82 ~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D 161 (393)
+||+++|..+++++|+|+||||++|++++++.|+.|+.+||||+.|+|++|.|||++||+... ..+++||.|+|+|
T Consensus 80 d~l~s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~----~~~a~hV~Fegad 155 (381)
T KOG0535|consen 80 DDLKSLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSR----ETKALHVCFEGAD 155 (381)
T ss_pred HHhhhhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcc----cCcceEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999864 2467899999999
Q ss_pred CccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeecc
Q 016226 162 KCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY 241 (393)
Q Consensus 162 ~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y 241 (393)
. ++.+..|.+|||+++||+|+.||||||+||||+|+++||||+|+||||..|+|+||||+||-|+.+|+++|||++||
T Consensus 156 ~--d~tg~pYgaSI~l~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qkDy 233 (381)
T KOG0535|consen 156 D--DPTGTPYGASIPLEKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQKDY 233 (381)
T ss_pred c--CCCCCcccccccHhhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhccc
Confidence 5 44456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccCCCCCCCCccceeceEEEEEecCCCcccC--CcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCc
Q 016226 242 KMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKP--GKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQK 319 (393)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~g~~v~~--g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~ 319 (393)
+.|+|.+++++.+|+..++|++|||+|+||.|.++..+++ |+++|+|||||||||+|.|||||+|||+||..|+|++.
T Consensus 234 k~f~psvd~d~~~w~~~p~iqe~pVqsaIctp~~~~~V~~~~~~vtikGYA~SGGGr~i~RVdvslDgG~tW~v~eldqe 313 (381)
T KOG0535|consen 234 KGFSPSVDWDEVDWSSKPSIQELPVQSAICTPEDGLPVKAFDGPVTIKGYAWSGGGRKIIRVDVSLDGGETWNVAELDQE 313 (381)
T ss_pred ccCCCccCccccccccCchhhhcCcceeecccCCCceeccCCCceEEEEEEEeCCCceEEEEEEEecCCceeeeeecccc
Confidence 9999999999889999999999999999999999999997 78999999999999999999999999999999999988
Q ss_pred CCCCccccCCCCCceeeEEeEEEEECCCc---cEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEEee
Q 016226 320 TGIPYIADHMSSDKWAWVFFEVIIDIPHS---TQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGH 390 (393)
Q Consensus 320 ~~~p~~~~~~~~~~~aW~~W~~~~~~~~~---~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~n~~~~v~v~v~~ 390 (393)
+. |. .+ +.|||++|+.+++++.+ ..|++||+|++.|+|||....|||+||++||+||||++.|.+
T Consensus 314 e~-~~----~~-~~w~W~lw~a~v~V~~~~~~~~I~akAvD~a~NvQPe~~~~IWNlrGvl~nawhRV~~~v~~ 381 (381)
T KOG0535|consen 314 EK-PD----KY-KFWAWCLWSAEVPVSDGQKEKNIIAKAVDSAYNVQPETVESIWNLRGVLNNAWHRVKVNVCK 381 (381)
T ss_pred cc-CC----cc-ceEEEEEEEecccccccchhhhhHHHhhhhhhcCCcchhhhhhhHHHHhhhheeEEEeeecC
Confidence 75 21 11 58999999999998544 469999999999999999999999999999999999999864
No 2
>PLN00177 sulfite oxidase; Provisional
Probab=100.00 E-value=5.7e-110 Score=840.05 Aligned_cols=393 Identities=85% Similarity=1.397 Sum_probs=357.9
Q ss_pred CCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCccCccCCCCcCCCCceEeccCCCCcccCCCCeEEEEEeccCCceeec
Q 016226 1 MPGLTAPSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLF 80 (393)
Q Consensus 1 ~~~~~~~~~~~~~p~r~~~l~~~~~~P~n~e~p~~~l~~~~iTP~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~lt 80 (393)
|+++++|++|+++|.|++.|++++++|+|+|||++.|.+++|||+++||||||+++|.+++.++|+|+|+|+|++|++||
T Consensus 1 ~~~~~~~~~~~~~p~r~~~l~~~~~~P~n~E~p~~~L~~~~iTP~~~ffvR~h~~~P~~~d~~~w~L~V~G~V~~p~~lt 80 (393)
T PLN00177 1 MPGLRGPSDYSQEPPRHPSLKINAKEPFNAEPPRSALVSSYITPVDLFYKRNHGPIPIVDDIERYSVTITGLIENPRKLS 80 (393)
T ss_pred CCcccCCCccccCCCCCCceEECCCCCCcCCCChHHhccCCcCCCcceEEECCCCCCCcCCCCceEEEEEeecCCCeEee
Confidence 88999999999999999999999999999999999998899999999999999999998645899999999999999999
Q ss_pred HHHHhcCccEeEEEEEEeecCCcccccccccccccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEc
Q 016226 81 MRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSI 160 (393)
Q Consensus 81 l~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~ 160 (393)
++||++||+++++++|+|+||+|++|++.+++.|++|+.|+|||++|+||+|+|||++||++..+.....++++|.|+|+
T Consensus 81 l~dL~~~p~~~~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~g~ 160 (393)
T PLN00177 81 MKDIRKLPKYNVTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVSV 160 (393)
T ss_pred HHHHhcCCCEEEEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEEEe
Confidence 99999999999999999999999999988899999999999999999999999999999996322111246899999999
Q ss_pred cCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeec
Q 016226 161 DKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD 240 (393)
Q Consensus 161 D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~ 240 (393)
|.+...++.+|.+||||+++|++.+++||||+||||||+++|||||||||||++|++|||||++|+|++++++||||+++
T Consensus 161 d~~~~~~~~~y~~sipl~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~~~~ 240 (393)
T PLN00177 161 DKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQKD 240 (393)
T ss_pred ccccccCCCCcEEeEEHHHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcceecc
Confidence 96544444579999999999987568999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCCCCCCccceeceEEEEEecCCCcccCCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCcC
Q 016226 241 YKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKT 320 (393)
Q Consensus 241 Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~g~~v~~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~~ 320 (393)
|+++++..+++...|.+..+|++|+++|+|+.|.+++.++.|+++|+||||||+|++|+|||||+|||+||++|+|..+.
T Consensus 241 Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~i~~g~~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~ 320 (393)
T PLN00177 241 YKMFPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIKPGKVTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQKP 320 (393)
T ss_pred cccCCCCCCccccCccccCcceeecCCeEEecCCCCCcccCceEEEEEEEECCCCccEEEEEEEcCCCCCceeeeecccc
Confidence 99998887776666877789999999999999999999998899999999998888999999999999999999997653
Q ss_pred CCCccccCCCCCceeeEEeEEEEECCCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEEeecCC
Q 016226 321 GIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM 393 (393)
Q Consensus 321 ~~p~~~~~~~~~~~aW~~W~~~~~~~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~n~~~~v~v~v~~~~~ 393 (393)
+.|+.......++|+|++|+++|..++.++|+|||||++||+||+....+||.+||+||+||+|+|+|.+++|
T Consensus 321 ~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wN~~Gy~~n~~~rv~v~v~~~~~ 393 (393)
T PLN00177 321 GVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAANVQPESVESIWNLRGILNTSWHRVQLRVGHSNM 393 (393)
T ss_pred ccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCCCCCCCCCcCCcCCCCcccccEEEEEEEEeeccC
Confidence 2221111223458999999999988888999999999999999998777899999999999999999999986
No 3
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=7.3e-101 Score=772.91 Aligned_cols=368 Identities=34% Similarity=0.684 Sum_probs=327.2
Q ss_pred CCCCCCCCCCCCCCCcee-ecCCCCCCCCCCccCcc-CCCCcCCCCceEeccCCCCcccCCCCeEEEEEeccCCceeecH
Q 016226 4 LTAPSSYSQEPPRHPILQ-INSKEPFNAEPPRSALI-SSYVTPVDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFM 81 (393)
Q Consensus 4 ~~~~~~~~~~p~r~~~l~-~~~~~P~n~e~p~~~l~-~~~iTP~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl 81 (393)
.+|||+|++ |+|.|+ ++.++|+|+|||+..|+ +++|||+++||+|||+++|.+|. ++|+|+|+|+|++|++||+
T Consensus 2 ~~~~~~~~~---r~~~li~~~~~~p~n~e~p~~~l~~~~~iTP~~~~yvr~h~~~P~id~-~~w~L~V~G~V~~p~~ltl 77 (386)
T cd02112 2 LGTPDAWIP---RDPRLIRLTGKHPFNSEPPLTELMDHGFITPSNLHYVRNHGPVPREKW-EDWTVEVTGLVEKPTTLTM 77 (386)
T ss_pred CCCCccccc---CCcceEEEcCCCCCcCCCChHHhcccCCcCCccceEEEcCCCCCcccC-CCcEEEEEeecCCCeEEeH
Confidence 579999998 999996 55668999999999865 78999999999999999999987 9999999999999999999
Q ss_pred HHHhcC-ccEeEEEEEEeecCCcccccccccccccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEc
Q 016226 82 RDIRML-RKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSI 160 (393)
Q Consensus 82 ~dL~~l-p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~ 160 (393)
+||++| |+++++++|+|+||+|++|+..+++.|.+|+.|+|+|++|+||+|+|||++||++... .++++|.|+|+
T Consensus 78 ~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~----~~a~~V~~~g~ 153 (386)
T cd02112 78 DELVAMFPSVTFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPK----GGARHVCFEGA 153 (386)
T ss_pred HHHHhcCCceEEEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCcc----CCceEEEEEcc
Confidence 999986 9999999999999999999878889999999999999999999999999999998521 15899999999
Q ss_pred cCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeec
Q 016226 161 DKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD 240 (393)
Q Consensus 161 D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~ 240 (393)
|.....+...|.+||||+++|++..++||||+||||||+.+|||||||||||++|++|||||++|+|+++++++|||+.+
T Consensus 154 D~~~~~~~~~y~~slpl~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~ 233 (386)
T cd02112 154 DDLLPGPNGKYGTSITLSWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHD 233 (386)
T ss_pred CcccccCCCCcEeeeEHHHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeecc
Confidence 95322233469999999999987568999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccC---C-CCC-CCCccceeceEEEEEecCCCcc-----c-CCcEEEEEEEEeCCCCCeEEEEEEeCCCC
Q 016226 241 YKMFPPSVNWDNI---N-WKS-RRPLMDFPVQCVICSLEDVNVM-----K-PGKAKVSGYAVSGGGRGIERVDISVDGGK 309 (393)
Q Consensus 241 Y~~~~~~~~~~~~---~-~~~-~~~i~~~~v~S~I~~P~~g~~v-----~-~g~v~i~G~A~sGgg~~V~rVEVS~DgG~ 309 (393)
|+++++..+++.. . |.+ ..+|++|+++|+|+.|.+++++ + .|+++|+||||||+|++|+|||||+|||+
T Consensus 234 y~~~~~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~P~~~~~v~~~~~~~~~~~~i~G~A~sg~g~~I~rVeVS~DgG~ 313 (386)
T cd02112 234 NRVLPSHVDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDGK 313 (386)
T ss_pred cccCCcccCccccccccccccCCceeeeeccCeEEeccCCCCEeeccccCCCCeEEEEEEEEcCCCCcEEEEEEEcCCCC
Confidence 9998776554422 1 443 3579999999999999999998 3 45899999999988889999999999999
Q ss_pred CceEeecCCcCCCCccccCCCCCceeeEEeEEEEEC---CCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 016226 310 NWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 386 (393)
Q Consensus 310 tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~---~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~n~~~~v~v 386 (393)
||++|+|.++.. | .++.++|||++|+++|++ ++.++|+|||||++||+||+.. +||.+||+||+||+|+|
T Consensus 314 tW~~A~L~~~~~-~----~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~--~wN~~Gy~~n~~~~v~v 386 (386)
T cd02112 314 SWKLASIDYPED-P----TKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNTQPRDM--TWNVMGMMNNCWFRVKI 386 (386)
T ss_pred CceeCCCCCCCC-c----cccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCcCCCCC--CccccceeeceEEEEcC
Confidence 999999977642 1 122348999999999976 3678999999999999999975 49999999999999985
No 4
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.1e-99 Score=758.49 Aligned_cols=359 Identities=54% Similarity=0.929 Sum_probs=325.5
Q ss_pred ceeecCCCCCCCCCCccCccCCCCcCCCCceEeccCCCCcccCCCCeEEEEEeccCCceeecHHHHhcC-ccEeEEEEEE
Q 016226 19 ILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFMRDIRML-RKYNITATLQ 97 (393)
Q Consensus 19 ~l~~~~~~P~n~e~p~~~l~~~~iTP~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~l-p~~~~~~~l~ 97 (393)
.||+++++|+|+|||+..|.+++|||+++||||||+++|.+|. ++|+|+|+|+|++|++||++||++| |+++++++|+
T Consensus 1 ~l~~~~~~P~n~E~p~~~l~~~~iTP~~~~yvr~h~~~P~~d~-~~w~L~V~G~V~~p~~ltl~dL~~~~p~~~~~~~l~ 79 (365)
T cd02111 1 ALKVNSKKPFNAEPPSSLLASSFITPNELFYVRNHLPVPVVDP-DTYSLEVEGPDGTTLSLSLEDLKSLFPKHEVTATLQ 79 (365)
T ss_pred CceEcCCCCCcCCCChHHhCcCCcCCCCceEEECCCCCCccCc-cccEEEEEeecCCCcEEeHHHHHhhCCcEEEEEEEE
Confidence 3799999999999999999888999999999999999999987 9999999999999999999999986 9999999999
Q ss_pred eecCCcccccccccccccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEec
Q 016226 98 CAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPL 177 (393)
Q Consensus 98 C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl 177 (393)
|+||+|++|...+++.|.+|+.|+|+|++|+||+|+|||++||++..+ ..++++|.|.|+|... +..+|.+||||
T Consensus 80 C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~---~~~a~~V~~~~~d~~~--~~~~y~~sipl 154 (365)
T cd02111 80 CAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDD---SQGGLHVHFEGLDVDP--TGTPYGASIPL 154 (365)
T ss_pred ecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCcc---CCCceEEEEEecCCCC--CCCCeeeeeEH
Confidence 999999999888889999999999999999999999999999998531 0147899999998433 23479999999
Q ss_pred hhhcCCCCCEEEEEecCCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeeccccCCCCCCcccCCCCC
Q 016226 178 SQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKS 257 (393)
Q Consensus 178 ~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~ 257 (393)
+++|+|.+++||||+||||||+.+|||||||||||++|++|||||++|+|++++++||||+++|+++++..+.+...|.+
T Consensus 155 ~~a~~p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~ 234 (365)
T cd02111 155 SKALDPEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDYKGFSPSVDWDNVDFSK 234 (365)
T ss_pred HHhhCcCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceecceeecCCCCCccccCccc
Confidence 99999655899999999999999999999999999999999999999999999999999999999988776666556777
Q ss_pred CCCccceeceEEEEEecCCCc---ccCCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCce
Q 016226 258 RRPLMDFPVQCVICSLEDVNV---MKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKW 334 (393)
Q Consensus 258 ~~~i~~~~v~S~I~~P~~g~~---v~~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~ 334 (393)
..+|++|+++|+|+.|.++++ +..|.++|+||||+|||++|+|||||+|||+||++|+|..+.. + .+++++|
T Consensus 235 ~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~-~----~~~~~~~ 309 (365)
T cd02111 235 APAIQEMPVQSAICSPSVGAPVVTVPPGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEEN-V----WPSGRKW 309 (365)
T ss_pred cCceeeeccCEEEecCCCCCeeeccCCceEEEEEEEECCCCCcEEEEEEECCCCCcceeCCcCCCCC-c----cccCCCC
Confidence 789999999999999999994 5567999999999988889999999999999999999987753 1 1234579
Q ss_pred eeEEeEEEEEC-C-CccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEE
Q 016226 335 AWVFFEVIIDI-P-HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 388 (393)
Q Consensus 335 aW~~W~~~~~~-~-~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~n~~~~v~v~v 388 (393)
||++|+++|++ + +.++|+|||||++||+||+....+||.+||+||+||+|+|.+
T Consensus 310 aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~QP~~~~~~wn~~Gy~~n~~~~v~v~~ 365 (365)
T cd02111 310 AWTLWEATVPVPAGKEAEIIAKAVDSAYNVQPETVEPIWNLRGVLNNAWHRVKVVV 365 (365)
T ss_pred EeEEEEEEEEeCCCCeEEEEEEEEcCCCCcCCCCCCCCCCccceecceEEEEEeeC
Confidence 99999999998 3 357999999999999999977667999999999999999974
No 5
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=6.2e-98 Score=816.54 Aligned_cols=372 Identities=34% Similarity=0.691 Sum_probs=335.5
Q ss_pred CCCCCCCCCCCCCCCcee-ecCCCCCCCCCCccCcc-CCCCcCCCCceEeccCCCCcccCCCCeEEEEEeccCCceeecH
Q 016226 4 LTAPSSYSQEPPRHPILQ-INSKEPFNAEPPRSALI-SSYVTPVDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFM 81 (393)
Q Consensus 4 ~~~~~~~~~~p~r~~~l~-~~~~~P~n~e~p~~~l~-~~~iTP~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl 81 (393)
..|||+|+. |+|+|+ +++++|||+|||+..|. .++|||+++||||||+++|.++. ++|+|+|+|+|++|++|||
T Consensus 75 ~~t~d~~~~---r~~~li~~~~~~P~n~E~p~~~L~~~~~iTP~~~~yVRnH~~vP~~~~-~~w~l~V~G~V~~p~~ltl 150 (888)
T PLN02252 75 EGTPDEWIP---RHPSLVRLTGKHPFNCEPPLARLMEHGFITPAPLHYVRNHGAVPRADW-DEWTVEVTGLVKRPARLTM 150 (888)
T ss_pred cCCCccccC---CCccceEEcCCCCCcCCCChHHhccCCCcCCCcceEEECCCCCCccCC-CCeEEEEeeecCCCeEeeH
Confidence 469999997 999996 77789999999999998 47999999999999999999977 9999999999999999999
Q ss_pred HHHhcCccEeEEEEEEeecCCcccccccccccccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEcc
Q 016226 82 RDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSID 161 (393)
Q Consensus 82 ~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D 161 (393)
+||++||+++++++|+|+||+|++|++++++.|++|+.|+|||+.|+||+|+|||++||++... .++++|.|+|+|
T Consensus 151 ~dL~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~~----~~a~~V~f~g~d 226 (888)
T PLN02252 151 DELVRFPARELPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSRK----GGALNVCFEGAE 226 (888)
T ss_pred HHHhhCCCeeEEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCCC----CCceEEEEEccc
Confidence 9999999999999999999999999999999999999999999999999999999999998421 368999999998
Q ss_pred CccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeecc
Q 016226 162 KCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDY 241 (393)
Q Consensus 162 ~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y 241 (393)
.....++..|.+||||+++|++.+++||||+||||||+++|||||||||||++|++|||||++|+|+++++++|||.++|
T Consensus 227 ~~~~~~~~~y~~sipl~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~d~ 306 (888)
T PLN02252 227 DLPGGGGSKYGTSITLERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYRDN 306 (888)
T ss_pred ccccCCCCCceeeeeHHHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeeccc
Confidence 54433334799999999999976689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccC---CCC-CC-CCccceeceEEEEEecCCCccc------CCcEEEEEEEEeCCCCCeEEEEEEeCCCCC
Q 016226 242 KMFPPSVNWDNI---NWK-SR-RPLMDFPVQCVICSLEDVNVMK------PGKAKVSGYAVSGGGRGIERVDISVDGGKN 310 (393)
Q Consensus 242 ~~~~~~~~~~~~---~~~-~~-~~i~~~~v~S~I~~P~~g~~v~------~g~v~i~G~A~sGgg~~V~rVEVS~DgG~t 310 (393)
+++|+.++.+.+ .|. +. .+|++|++||+|+.|.+++.+. .++++|+||||+|||++|+|||||+|||+|
T Consensus 307 r~~p~~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~~~~i~G~A~sggg~~I~rVEVS~DgG~t 386 (888)
T PLN02252 307 RVLPSHVDAELANAEGWWYKPEYIINELNINSVITTPAHDEILPINASTTQRPYTMKGYAYSGGGRKVTRVEVSLDGGET 386 (888)
T ss_pred ccCCCcccccccccccccccCCccceeeccceEEecCCCCCEecccccCCCceEEEEEEEECCCCCceEEEEEEcCCCCc
Confidence 999887665432 243 32 3799999999999999999986 347999999999989999999999999999
Q ss_pred ceEeecCCcCCCCccccCCCCCceeeEEeEEEEEC---CCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEE
Q 016226 311 WVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI---PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVR 387 (393)
Q Consensus 311 W~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~---~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~n~~~~v~v~ 387 (393)
|+.|+|..++. | .++++.|||++|+++|.+ .+.++|+|||||++||+||+.. +||++||+||+||+|+|+
T Consensus 387 W~~a~l~~~~~-~----~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~--~wN~~G~~nN~~~rv~v~ 459 (888)
T PLN02252 387 WRLCDLDHPEK-P----TKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMNTQPEKL--IWNLMGMMNNCWFRVKVN 459 (888)
T ss_pred ceeCccCCCCC-c----cccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCCcCCCCC--ccCcCceEEeeEEEEEEE
Confidence 99999988753 1 234556899999999975 4678999999999999999875 499999999999999999
Q ss_pred Eee
Q 016226 388 VGH 390 (393)
Q Consensus 388 v~~ 390 (393)
|.+
T Consensus 460 v~~ 462 (888)
T PLN02252 460 VCK 462 (888)
T ss_pred Eee
Confidence 854
No 6
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.2e-95 Score=729.93 Aligned_cols=357 Identities=29% Similarity=0.505 Sum_probs=312.7
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCCCCCCCCccCccCCCCcCCCCceEeccC-CCC-cccCCCCeEEEEEeccCCceeec
Q 016226 3 GLTAPSSYSQEPPRHPILQINSKEPFNAEPPRSALISSYVTPVDFFYKRNHG-PIP-IVDDIESYYVSICGLIENSKDLF 80 (393)
Q Consensus 3 ~~~~~~~~~~~p~r~~~l~~~~~~P~n~e~p~~~l~~~~iTP~~~~yvr~h~-~~P-~~~~~~~w~L~V~G~V~~p~~lt 80 (393)
+.+...+....|.++ .|+++..+|+|+|||++.|.+++|||+++||+|||. ++| .+|. ++|+|+|+|+|++|++||
T Consensus 3 ~~~~~~~~~~~~~~~-~li~~~~~p~n~e~p~~~l~~~~iTP~~~~fvr~h~~~~p~~~d~-~~w~L~V~G~V~~p~~~t 80 (367)
T cd02114 3 FDNGWRELVPFPQKR-PLIRLTTRPPHLETPFSVFNEGLITPNDAFFVRYHLAGIPLDIDP-DAYTLTIDGKVRTPLTLS 80 (367)
T ss_pred CCCCCcccccCCCCC-CceEecCCCCcCCCCHHHhCcCCcCCCCcceEEcCCCCCCccccC-CCcEEEEeEEeCCCeEEE
Confidence 444444444455564 467777799999999999888899999999999996 677 8876 999999999999999999
Q ss_pred HHHHhcC-ccEeEEEEEEeecCCcccccccccccccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEE
Q 016226 81 MRDIRML-RKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVS 159 (393)
Q Consensus 81 l~dL~~l-p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~ 159 (393)
++||++| |+++++++++|+||+|+.+. +++.|.+|+.|+|++++|+||+|+|||++||++. ++++|.|+|
T Consensus 81 l~dL~~~~p~~~~~~~l~C~gN~r~~~~--~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~-------~a~~V~f~g 151 (367)
T cd02114 81 LAELKRIEPRFEVVAVNQCSGNSRGFFQ--PRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQD-------GARQVAFRG 151 (367)
T ss_pred HHHHhhcCCceEEEEEEEECCCCccccc--ccccCCCcccceEEeeEEEeeEHHHHHHHcCCCC-------CCcEEEEEe
Confidence 9999985 99999999999999998874 5788999999999999999999999999999985 589999999
Q ss_pred ccCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeee
Q 016226 160 IDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQK 239 (393)
Q Consensus 160 ~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~ 239 (393)
+|.........|.+||||++++++ ++||||+||||||+++|||||||||||++|++|||||++|+|++++++||||++
T Consensus 152 ~D~~~~~~~~~y~~sipl~~a~~~--~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~ 229 (367)
T cd02114 152 LDQPVLDVTPDFVKSLDIDHALDG--EVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQ 229 (367)
T ss_pred cCCccccCCCCeEEeeeHHHhcCC--CeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeec
Confidence 995332233359999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccc--CCCCCCCCccceeceEEEEEecCCCcccCC-cEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeec
Q 016226 240 DYKMFPPSVNWDN--INWKSRRPLMDFPVQCVICSLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR 316 (393)
Q Consensus 240 ~Y~~~~~~~~~~~--~~~~~~~~i~~~~v~S~I~~P~~g~~v~~g-~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l 316 (393)
+|+++........ ..+.+..+|++|+++|+|+.|.+|+.++.| +++|+||||+| +++|+|||||+|||+||++|+|
T Consensus 230 ~Y~~~~~~~~~~~~g~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~i~G~A~~G-~~~I~rVEVS~DgG~tW~~A~l 308 (367)
T cd02114 230 AYRIPDNADAGVEPGTAPDRTAPINRFKVRSFITSLENGAIVAPAGELALRGIAFDG-GSGIRRVDVSADGGDSWTQATL 308 (367)
T ss_pred ccccCCCcccccCCcccccccceeeeeecceEEecCCCCCEecCCCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEe
Confidence 9997644321111 112345689999999999999999998865 89999999997 6689999999999999999999
Q ss_pred CCcCCCCccccCCCCCceeeEEeEEEEEC--CCccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEE
Q 016226 317 YQKTGIPYIADHMSSDKWAWVFFEVIIDI--PHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQV 386 (393)
Q Consensus 317 ~~~~~~p~~~~~~~~~~~aW~~W~~~~~~--~~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~n~~~~v~v 386 (393)
.++.+ +|+|++|+|+|++ ++.++|+|||||++||+||+... ||.+||+||+||+|+|
T Consensus 309 ~~~~~-----------~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~--wn~~Gy~~n~~~~v~v 367 (367)
T cd02114 309 GPDLG-----------RFSFRGWKLTLDGVKKGPLTLMVRATNNDGQTQPLRAP--WNPGGYMRNVVERTRI 367 (367)
T ss_pred CCCCC-----------CcEEEEEEEEEECCCCCcEEEEEEEEcCCCCCCCCCCc--cCcccEecceEEEEeC
Confidence 87654 7999999999987 46789999999999999998654 9999999999999986
No 7
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=4.8e-90 Score=680.26 Aligned_cols=317 Identities=28% Similarity=0.452 Sum_probs=288.4
Q ss_pred ccCccCCCCcCCCCceEeccCCCCcccCCCCeEEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCccccccccccc
Q 016226 34 RSALISSYVTPVDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVK 113 (393)
Q Consensus 34 ~~~l~~~~iTP~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~ 113 (393)
+..| +++|||+++||||||+++|.+|. ++|+|+|+|+|++|++||++||++||+++++++|+|+||+|+.|+.. ++.
T Consensus 2 ~~~l-~~~iTP~~~~fvr~h~~~P~~d~-~~w~L~V~G~V~~p~~ltl~dL~~~p~~~~~~~l~C~gn~r~~~~~~-~~~ 78 (326)
T cd02113 2 LQDL-EGIITPNGLHFERHHGGVPDIDP-AQHRLMIHGMVKKPLVFTMDDLKRFPSVSRIYFLECSGNGGTGWRGA-PLP 78 (326)
T ss_pred hhhc-cCCcCCCcceEEECCCCCCccCc-cccEEEEEEecCCCeEeeHHHHhcCCCEEEEEEEEecCCCccccccc-ccc
Confidence 3444 67999999999999999999987 99999999999999999999999999999999999999999999753 478
Q ss_pred ccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEec
Q 016226 114 GVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEM 193 (393)
Q Consensus 114 G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~m 193 (393)
|++|+.|+|+|++|+||+|+|||++||+++ ++++|.|.|+| +..|.+||||+++|+ ++||||+|
T Consensus 79 G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~-------~a~~V~~~g~D------~~~y~~sipl~~a~~---~~lLAy~m 142 (326)
T cd02113 79 TAQYTHGMLSCSEWTGVPLSTLLEEAGVKP-------GAKWLLAEGAD------AAAMTRSIPLEKALD---DALVAYAQ 142 (326)
T ss_pred cccccccceeEEEEEeeEHHHHHHhcCCCC-------CceEEEEEecC------CCceeEEeeHHHhCc---CcEEEEee
Confidence 999999999999999999999999999985 68999999998 225999999999993 79999999
Q ss_pred CCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeeccccCCCCCCcccCCCCCCCCccceeceEEEEEe
Q 016226 194 NGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSL 273 (393)
Q Consensus 194 NGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P 273 (393)
|||||+.+|||||||||||++|++|||||++|+|++++++++||+.+|+..++... ...++++|+++|+|+.|
T Consensus 143 NGepL~~~hG~PlRlvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~Y~~~~~~~~-------~~~~~~~~~v~S~I~~P 215 (326)
T cd02113 143 NGEALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQPWMTREETSKYTDLLPDGR-------ARQFSFVMEAKSVITSP 215 (326)
T ss_pred CCeECChhhCceEEEEeCCccceeCceEeeEEEEEecccCCchhhccccccCCCCc-------ccccceEecccEEEecC
Confidence 99999999999999999999999999999999999999999999999998655432 12466789999999999
Q ss_pred cCCCccc-CCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCceeeEEeEEEEECCC-ccEE
Q 016226 274 EDVNVMK-PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPH-STQI 351 (393)
Q Consensus 274 ~~g~~v~-~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~~~-~~~i 351 (393)
.+++.+. .|+++|+||||+|++ +|+|||||+|||+||++|+|..+.+ +|+|++|++.|.+.+ .++|
T Consensus 216 ~~~~~~~~~~~~~i~G~A~sG~~-~I~rVEVS~DgG~tW~~A~l~~~~~-----------~~aW~~w~~~w~~~~g~~~i 283 (326)
T cd02113 216 SGGQRLREPGFHEISGLAWSGRG-RIRRVDVSFDGGRTWQDARLEGPVL-----------PKALTRFRLPWKWDGRPAVL 283 (326)
T ss_pred CCCCEecCCCeEEEEEEEECCCC-CEEEEEEEcCCCCCceECccCCCCC-----------CCceEEEeEEEEcCCCeEEE
Confidence 9999996 568999999999755 6999999999999999999988865 899999999999854 5899
Q ss_pred EEEeEeCCCCCCCCCccccccccc----CCCCceEEEEEEEe
Q 016226 352 VAKAVDTAANVQPESVETIWNLRG----VLNTSWHRVQVRVG 389 (393)
Q Consensus 352 ~~RA~D~~G~~QP~~~~~~wN~~G----~~~n~~~~v~v~v~ 389 (393)
+|||||++||+||+.. .+||.+| |++|++|++.|.|+
T Consensus 284 ~~RA~D~~G~~QP~~~-~~~n~~g~n~gy~~n~~~~~~v~~~ 324 (326)
T cd02113 284 QSRATDETGYVQPTRA-ELRAVRGTNSIYHNNAIQSWRVDED 324 (326)
T ss_pred EEEEEcCCCCCCCCCc-ccchhcccccceecceEEEEEEEcC
Confidence 9999999999999864 4577776 99999999999985
No 8
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=100.00 E-value=1.9e-86 Score=655.18 Aligned_cols=315 Identities=44% Similarity=0.776 Sum_probs=284.7
Q ss_pred CceEeccCCCCcccCCCCeEEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCcccccccccccccccccCccccee
Q 016226 47 FFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAV 126 (393)
Q Consensus 47 ~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~ 126 (393)
+||||||+++|.+|. ++|+|+|+|+|++|++||++||++||+++++++|+|+||+|++|++. ..|++|+.|+|++++
T Consensus 1 ~~fvr~h~~~P~~d~-~~w~L~V~G~v~~p~~~tl~dL~~lp~~~~~~~l~C~gn~r~~~~~~--~~g~~W~~g~i~~~~ 77 (317)
T cd02110 1 LFFVRNHGGVPDIDP-DAWRLEIHGLVERPLTLTLDDLKRLPSVEVVATLECSGNGRGGFIPV--RSGAQWGHGAVGNAR 77 (317)
T ss_pred CeEEECCCCCCccCc-cccEEEEEeeeCCCcEEeHHHHhhCCCeeEEEEEEcCCCCccccccc--ccCCccccCceeecE
Confidence 599999999999987 99999999999999999999999999999999999999999999754 349999999999999
Q ss_pred EEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcE
Q 016226 127 WSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPL 206 (393)
Q Consensus 127 w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~Pl 206 (393)
|+||+|+|||++||++. ++++|.|+|+|......+.+|.++|||++++++ ++||||+||||||+.+|||||
T Consensus 78 w~GV~L~dlL~~ag~~~-------~a~~V~~~~~D~~~~~~~~~Y~~sipl~~~~~~--~~iLAy~mNGepL~~~hG~Pl 148 (317)
T cd02110 78 WTGVPLKDLLEEAGVKP-------GAKHVLFEGADVPPGEKAADYTRSVPLSKALDD--DALLAYEMNGEPLPPDHGYPL 148 (317)
T ss_pred EECcCHHHHHHHhCCCC-------CCcEEEEEccCcccccCCCCeEEEEEHHHhcCC--CcEEEehhcCccCCHHhCCce
Confidence 99999999999999985 589999999985444344579999999999984 899999999999999999999
Q ss_pred EEEecCccccccccceeEEEEEeccCCCceeeeccccCCCCCCcccCCCCCCCCccceeceEEEEEecCCCcccC-CcEE
Q 016226 207 RVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKP-GKAK 285 (393)
Q Consensus 207 RLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~g~~v~~-g~v~ 285 (393)
|||+||++|++|||||++|+|++++++||||+++|+++++..++ ..+.+..++++|+++|+|+.|.+++.+.. ++++
T Consensus 149 RlvvPg~~G~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~--~~~~~~~~~~~~~~~s~I~~p~~~~~~~~~~~~~ 226 (317)
T cd02110 149 RLVVPGWYGARSVKWLRRIEVTDQPSDGYWQTRDYTVPPPDVDA--VGGKARRPIGEMPVKSVITSPSPGAELVSGGRVE 226 (317)
T ss_pred EEEcCCceeeEeeEEeeEEEEEecCCCCceEccccccCCCcccc--cCCCccceeEEEccCEEEeccCCCCEecCCCeEE
Confidence 99999999999999999999999999999999999998776443 22345678999999999999999976664 4899
Q ss_pred EEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCceeeEEeEEEEEC-CCccEEEEEeEeCCCCCCC
Q 016226 286 VSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVDTAANVQP 364 (393)
Q Consensus 286 i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~-~~~~~i~~RA~D~~G~~QP 364 (393)
|+|+||+| +++|+|||||+|||+||++|+|.++.. ++|+|++|+|+|++ ++.++|+|||+|++||+||
T Consensus 227 i~G~A~~g-~~~I~rVEvS~DgG~tW~~A~l~~~~~----------~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~QP 295 (317)
T cd02110 227 IGGVAWSG-GRGIRRVEVSLDGGRTWQEARLEGPLA----------GPRAWRQWELDWDLPPGEYELVARATDSTGNVQP 295 (317)
T ss_pred EEEEEEcC-CCCEEEEEEEeCCCCcceEeEccCCcC----------CCCEEEEEEEEEEcCCCcEEEEEEEECCCCCcCC
Confidence 99999996 668999999999999999999987751 27999999999998 5678999999999999999
Q ss_pred CCcccccccccCCCCceEEEEE
Q 016226 365 ESVETIWNLRGVLNTSWHRVQV 386 (393)
Q Consensus 365 ~~~~~~wN~~G~~~n~~~~v~v 386 (393)
+.....||++||++|+||+|+|
T Consensus 296 ~~~~~~~n~~g~~~n~~~~v~v 317 (317)
T cd02110 296 ERAEWNWNPGGYGNNHWHRVQV 317 (317)
T ss_pred CcccccccCCCceeeeEEEEEC
Confidence 9877445679999999999986
No 9
>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=1.3e-48 Score=363.81 Aligned_cols=186 Identities=26% Similarity=0.370 Sum_probs=160.4
Q ss_pred CCCceEeccCCCCcccCCCCeEEEEEeccCCceeecHHHHhc-CccEeEEEEEEeecCCcccccccccccccccccCccc
Q 016226 45 VDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFMRDIRM-LRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIG 123 (393)
Q Consensus 45 ~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~-lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~ 123 (393)
+.++|+||| |.+|. ++|+|+|+|+|++|++||++||++ ||+++++++|+|++ +|+.
T Consensus 12 ~~~~~~~~~---~~vd~-~~w~L~V~GlV~~p~~ltl~eL~~~lP~~~~~~~l~Cv~---------------gWs~---- 68 (218)
T cd02107 12 GKDDPARNA---GNLPT-RPWTVSVSGLVKKPKTLDIDDLMKTFPLEERIYRFRCVE---------------GWSM---- 68 (218)
T ss_pred CCccHHHhc---CCCCc-CCeEEEEEeEcCCCeEEEHHHHHhcCCCeEEEEEEEEeC---------------CCcc----
Confidence 445677777 45666 899999999999999999999998 99999999999985 4763
Q ss_pred ceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCcc---ccC------CCCeEEEEechhhcCCCCCEEEEEecC
Q 016226 124 NAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EEN------GGPYKASIPLSQATNPEADVLLAYEMN 194 (393)
Q Consensus 124 ~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~---~~~------~~~Y~~sipl~~~~~~~~~vlLAy~mN 194 (393)
+++|+||+|++||++||+++ ++++|.|+|+|... +.+ ..+|.+||||+++|++ ++||||+||
T Consensus 69 ~a~W~GV~L~dlLe~ag~~~-------~A~~V~f~~~d~~~~~~g~~g~~~~~~~~Y~~slpl~~Al~~--~~LLAy~mN 139 (218)
T cd02107 69 VVPWVGFPLAALLARAEPTS-------EAKYVRFTTLLDKEQMPGQSGLFGVLPWPYVEGLRLDEAMHP--LTLLAVGLY 139 (218)
T ss_pred eeEEEeeEHHHHHHHcCCCC-------CCCEEEEEecCccccccCCccccccccCCcccceeHHHhhCc--ccEEEeeeC
Confidence 69999999999999999985 68999999997311 111 1259999999999996 799999999
Q ss_pred CccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeec------cccCCCCCCcccCCCCCCCCccceeceE
Q 016226 195 GEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKD------YKMFPPSVNWDNINWKSRRPLMDFPVQC 268 (393)
Q Consensus 195 GepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~------Y~~~~~~~~~~~~~~~~~~~i~~~~v~S 268 (393)
||||+++|||||||||||+||++|||||++|+|++++++||||+++ |+..++.++ .|+++|.++|
T Consensus 140 GepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyWe~~~~~~~~~y~~~~~~~~---------~~~~~~~~~~ 210 (218)
T cd02107 140 GEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTWNLAAPDEYGFYANVNPSVD---------HPRWSQATER 210 (218)
T ss_pred CcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcccccCcccccccccCCCCCC---------CCccccceee
Confidence 9999999999999999999999999999999999999999999994 554444321 5799999999
Q ss_pred EEE
Q 016226 269 VIC 271 (393)
Q Consensus 269 ~I~ 271 (393)
.|.
T Consensus 211 ~i~ 213 (218)
T cd02107 211 RIG 213 (218)
T ss_pred eec
Confidence 996
No 10
>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=1.5e-45 Score=337.76 Aligned_cols=171 Identities=32% Similarity=0.580 Sum_probs=153.9
Q ss_pred CCCCc-CCCCceEeccCCCCcccCCCCeEEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCccccccccccccccc
Q 016226 39 SSYVT-PVDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGW 117 (393)
Q Consensus 39 ~~~iT-P~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W 117 (393)
.+.|| |+++||.|+|.. +. ++|+|+|+|+|++|++||++||++||+++++++++|++ +|
T Consensus 7 ~~~~~~p~~~~y~~~~~~----~~-~~w~l~V~G~v~~p~~ltl~dL~~lp~~~~~~~~~Cv~---------------gw 66 (185)
T cd02108 7 RNGIRKPEALAYKALEAN----DF-ADYRLEVGGLVEHPLSLSLEELRALPQRTQITRHICVE---------------GW 66 (185)
T ss_pred hhhccCCCccceeccCCC----CC-CCEEEEEEcccCCCEEEEHHHHhCCCCEEEEEEEEEcC---------------CC
Confidence 34577 999999999874 44 89999999999999999999999999999999999986 35
Q ss_pred ccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEecCCcc
Q 016226 118 DVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEP 197 (393)
Q Consensus 118 ~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGep 197 (393)
+. .++|+||+|+|||++||++. ++++|.|+|+|.... ..+|.++|||++++++ ++||||+|||||
T Consensus 67 s~----~~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~d~~~~--~~~Y~~sipl~~~~~~--~~iLA~~~nGep 131 (185)
T cd02108 67 SA----IGKWGGVPLRTILELVGPLP-------EAKYVVFKCADDFAG--GDRYYESIDMASALHP--QTLLAYEMNGQP 131 (185)
T ss_pred ce----EEEEEEEEHHHHHHHhCCCC-------CCcEEEEEecCcCCC--CCCeEEEEEHHHhcCC--CcEEEEeeCCeE
Confidence 42 47999999999999999985 578999999985422 2379999999999985 799999999999
Q ss_pred CCCCCCCcEEEEecCccccccccceeEEEEEeccCC------CceeeeccccC
Q 016226 198 LNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQ------GFFMQKDYKMF 244 (393)
Q Consensus 198 L~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~------~~~~~~~Y~~~ 244 (393)
|+.+|||||||||||++|.+|||||++|+|++++.+ |||++++|+.+
T Consensus 132 L~~~hG~PlRLvvPg~~G~k~vKwl~~I~~~~~~~~~~~~~~g~We~~gy~~~ 184 (185)
T cd02108 132 LPIKNGAPLRLRVETQLGYKQAKWVTEIELVNDLPGIGGGKGGYWEDQGYNWF 184 (185)
T ss_pred CChhcCceEEEEcCCcccccCceEccEEEEEeccCccccCCCCccccCCcccc
Confidence 999999999999999999999999999999999999 99999999864
No 11
>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....
Probab=100.00 E-value=6.1e-46 Score=336.35 Aligned_cols=169 Identities=47% Similarity=0.843 Sum_probs=144.2
Q ss_pred eccCCCCcccCCCCeEEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCcccccccccccccccccCcccceeEEcc
Q 016226 51 RNHGPIPIVDDIESYYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGA 130 (393)
Q Consensus 51 r~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV 130 (393)
|||+++|.+++.++|+|+|+|+|++|++||++||++||++++.++++|++|+|. |.+|+.++|+++.|+||
T Consensus 1 r~~~~~p~~~~~~~~~l~V~G~v~~~~~ltl~dL~~lp~~~~~~~~~c~~~~~~---------~~~w~~~~i~~~~~~GV 71 (169)
T PF00174_consen 1 RNHGPVPSIDDRESWTLTVSGLVENPLTLTLADLKALPQVTQTVTLHCVGNRRA---------GFPWSAGAIGNAEWTGV 71 (169)
T ss_dssp EESSSB-EESTCTT-EEEEEESBSSEEEEEHHHHHHS-EEEEEEEEEETTTTHH---------SHHCCSTSEEEEEEEEE
T ss_pred CCcCCCCccCCCCCEEEEEEeecCCceEecHHHHhCCcCeEEEEEEEecCCCcc---------CccccccceeeeeeEEE
Confidence 899999999866899999999999999999999999999999999999999876 56899999999999999
Q ss_pred cHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEEEEe
Q 016226 131 KLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVV 210 (393)
Q Consensus 131 ~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVv 210 (393)
+|++||++||+++ ++++|.|+|.|.... ...+|.++||++++++. ++||||+|||+||+.+||+|+|||+
T Consensus 72 ~L~dlL~~ag~~~-------~a~~V~~~~~D~~~~-~~~gY~~~l~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlvv 141 (169)
T PF00174_consen 72 PLSDLLEKAGIKP-------DAKYVVFTGADGYPM-THDGYSVSLPLEDALEE--DVILAYEMNGEPLPPEHGGPLRLVV 141 (169)
T ss_dssp EHHHHHHHHTB-T-------T-EEEEEEESCETTC-TTSSEEEEEEHHHHHST--CSEEEEEETTEE--GGGTTT-EEE-
T ss_pred cHHHHHHHcCCCC-------CccEEEEEEcCCCcc-cCCCeEEEEEHHHhhcC--CeEEEEccCCccccccccCcEEEec
Confidence 9999999999985 589999999983222 23489999999999984 8999999999999999999999999
Q ss_pred cCccccccccceeEEEEEeccCCCceee
Q 016226 211 PGVIGARSVKWLDTINILAEECQGFFMQ 238 (393)
Q Consensus 211 Pg~~G~~~VKwL~~Iev~~~~~~~~~~~ 238 (393)
|+.+|++|||||++|+|++++++||||+
T Consensus 142 P~~~g~~~vKwv~~Ie~~~~~~~g~we~ 169 (169)
T PF00174_consen 142 PGKYGYRSVKWVSRIEVTDEESPGYWEE 169 (169)
T ss_dssp TTBBGGGS-BSEEEEEEESS---SHHHH
T ss_pred CCeEccCCceECCEEEEEeCCCCCCccC
Confidence 9999999999999999999999999984
No 12
>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=5.7e-45 Score=332.98 Aligned_cols=165 Identities=35% Similarity=0.571 Sum_probs=154.5
Q ss_pred CCCceEeccCCCCcccCCCCeEEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCcccccccccccccccccCcccc
Q 016226 45 VDFFYKRNHGPIPIVDDIESYYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGN 124 (393)
Q Consensus 45 ~~~~yvr~h~~~P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~ 124 (393)
.+.||+++|.++|.++. ++|+|+|+|+|++|++||++||++||+++++++++|++ +|+. ++
T Consensus 8 ~~~~~~~~~~~~p~~~~-~~~~L~V~G~v~~p~~ltl~dL~~lp~~~~~~~~~C~~---------------~w~~---~~ 68 (180)
T cd02109 8 TEKFPVLDAGDVPEVDL-EKWRLRVTGLVENPLSLTYEDLLALPQTEYTADFHCVT---------------GWSK---LD 68 (180)
T ss_pred cCCccEeccCCCCcccC-CCeEEEEEeecCCceEEEHHHHhCCCCEEEEEEEEecC---------------CCcc---cC
Confidence 35699999999999977 99999999999999999999999999999999999986 4653 47
Q ss_pred eeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCC
Q 016226 125 AVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGY 204 (393)
Q Consensus 125 ~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~ 204 (393)
++|+||+|++||++||++. ++++|.|+|+| +|.++||+++++++ ++||||+||||||+.+|||
T Consensus 69 ~~w~Gv~L~dlL~~ag~~~-------~a~~V~~~a~D--------gY~~~ipl~~~~~~--~~iLA~~~nG~pL~~~~Gg 131 (180)
T cd02109 69 VVWEGVSLKDLLEAARPDP-------EATFVMAHSYD--------GYTTNLPLEDLLRE--DSLLATKMDGEPLPPEHGG 131 (180)
T ss_pred cEEEeeEHHHHHHHcCCCC-------CCeEEEEEecC--------CceEEeEHHHhcCC--CeEEEEeeCCeECChhcCc
Confidence 9999999999999999984 58999999998 89999999999985 8999999999999999999
Q ss_pred cEEEEecCccccccccceeEEEEEeccCCCceeeeccccCC
Q 016226 205 PLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMFP 245 (393)
Q Consensus 205 PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y~~~~ 245 (393)
|+|||+||++|.+|||||++|+|++.+.+|||++++|+...
T Consensus 132 Plrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~~gy~~~~ 172 (180)
T cd02109 132 PARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYHERG 172 (180)
T ss_pred eEEEEeCCeeeeeCceECCEEEEEeCCCCCcccccCcCCCC
Confidence 99999999999999999999999999999999999998753
No 13
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=100.00 E-value=1.1e-42 Score=338.34 Aligned_cols=197 Identities=24% Similarity=0.322 Sum_probs=165.2
Q ss_pred CCcCCCCceEeccCC-C-----CcccCCCCeEEEEEeccCCceeecHHHHhc-CccEeEEEEEEeecCCccccccccccc
Q 016226 41 YVTPVDFFYKRNHGP-I-----PIVDDIESYYVSICGLIENSKDLFMRDIRM-LRKYNITATLQCAGNRRTAMSNVRTVK 113 (393)
Q Consensus 41 ~iTP~~~~yvr~h~~-~-----P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~-lp~~~~~~~l~C~gN~r~~~~~~~~~~ 113 (393)
.+|+++.||...... . +.++. +.|+|+|+|+|++|++||++||++ ||+++++++|+|++
T Consensus 73 ~~t~ynnFYef~t~k~dp~~~~~~~~~-~~W~L~V~G~V~kP~~ltldDL~~~~P~~eri~~l~CVe------------- 138 (319)
T PRK05363 73 DVTTYNNFYEFGTDKADPARNAGSLKT-DPWTVKIDGEVEKPGTLDIDDLLKLFPLEERIYRLRCVE------------- 138 (319)
T ss_pred HcCCCCCeEEecCCcCChhHhcCcCCC-CCeEEEEeeecCCCeEEEHHHHHhcCCCeEEEEEEEEcC-------------
Confidence 489999999998765 2 45766 999999999999999999999997 89999999999986
Q ss_pred ccccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCcc---cc----CCCCeEEEEechhhcCCCCC
Q 016226 114 GVGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCK---EE----NGGPYKASIPLSQATNPEAD 186 (393)
Q Consensus 114 G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~---~~----~~~~Y~~sipl~~~~~~~~~ 186 (393)
+|+. ++.|+||+|++||++||+++ +|++|.|+++|..+ +. .+..|..+|||+++|++ +
T Consensus 139 --gWs~----~~~W~GvpL~dLLe~agp~~-------~AkyV~f~s~~d~~~~~g~~~~~~~~pY~~~LpL~eAm~p--~ 203 (319)
T PRK05363 139 --AWSM----VIPWIGFPLAKLLKRVEPTS-------NAKYVAFETLYDPEQMPGQRSRFLDWPYVEGLRLDEAMHP--L 203 (319)
T ss_pred --CCce----eeEEEeeEHHHHHHHcCCCC-------CCcEEEEEecCccccccCCcccccCCCeeccccHHHHhCc--c
Confidence 3762 79999999999999999985 68999999986322 11 11259999999999996 7
Q ss_pred EEEEEecCCccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeecccc--CCCCCCcccCCCCCCCCccce
Q 016226 187 VLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKM--FPPSVNWDNINWKSRRPLMDF 264 (393)
Q Consensus 187 vlLAy~mNGepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y~~--~~~~~~~~~~~~~~~~~i~~~ 264 (393)
+||||+|||||||.+||+||||||||+||++|||||.+|+|++++..||||+++|+. |-..++++ -.-|-|++
T Consensus 204 tlLA~~mnGepLp~qhG~PlRLVVPg~YG~KsvKWI~~Ie~~~~~~~g~We~~~~~eygfyanvnp~-----v~hPrwsq 278 (319)
T PRK05363 204 TLLAVGLYGKTLPNQNGAPIRLVVPWKYGFKSIKSIVRIRLTEEQPPTTWNLLAPNEYGFYANVNPN-----VDHPRWSQ 278 (319)
T ss_pred ceehhhhCCcCCchhhCCceEEEeCCceeeecceeeeEEEEEeCCCCCchhccCccccceeeecCCC-----CCCCcccc
Confidence 999999999999999999999999999999999999999999999999999998765 22223222 11245566
Q ss_pred eceEEEE
Q 016226 265 PVQCVIC 271 (393)
Q Consensus 265 ~v~S~I~ 271 (393)
...+.|.
T Consensus 279 a~er~ig 285 (319)
T PRK05363 279 ATERRIG 285 (319)
T ss_pred chhceec
Confidence 6777774
No 14
>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=6.4e-38 Score=280.50 Aligned_cols=155 Identities=46% Similarity=0.865 Sum_probs=139.0
Q ss_pred eEeccCCC-CcccCCCCeEEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCcccccccccccccccccCcccceeE
Q 016226 49 YKRNHGPI-PIVDDIESYYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVW 127 (393)
Q Consensus 49 yvr~h~~~-P~~~~~~~w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w 127 (393)
|+|+|... |.++. ++|+|+|.|.|+++++||++||++||++++.++++|++|+ |+.+.++++.|
T Consensus 1 ~~~~~~~~~~~~d~-~~w~l~v~G~v~~~~~~tl~eL~~lp~~~~~~~~~c~~n~--------------~~~~~~~~~~~ 65 (156)
T cd00321 1 FVRNHGGVPPEIDP-DDWRLEVDGLVEKPLSLTLDDLKALPQVEVIATLHCVGNR--------------WGGGAVSNAEW 65 (156)
T ss_pred CeeCCCCCCCccCC-CCeEEEEEeecCCCeEEEHHHHhcCCCEEEEEEEEECCCC--------------CCCccEeccEE
Confidence 67889765 45766 8999999999999999999999999999999999999984 66666778999
Q ss_pred EcccHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEE
Q 016226 128 SGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLR 207 (393)
Q Consensus 128 ~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlR 207 (393)
+||+|++||+++|++. ++++|.|+|.|.. ++.+|.++||+++++++ ++||||+||||||+.+||+|+|
T Consensus 66 ~Gv~L~~lL~~ag~~~-------~~~~v~~~a~d~~---~~dgY~~~i~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlr 133 (156)
T cd00321 66 TGVPLRDLLEEAGPKP-------GARYVVFEGADDP---GGDGYTTSLPLEKALDP--DVLLAYEMNGEPLPPDHGFPLR 133 (156)
T ss_pred EEEEHHHHHHHcCCCC-------CCeEEEEEeeCCC---CCCCEEEEEEHHHhhCC--CCEEEeeeCCeECchhhCCceE
Confidence 9999999999999985 5899999999421 22389999999999984 8999999999999999999999
Q ss_pred EEecCccccccccceeEEEEEec
Q 016226 208 VVVPGVIGARSVKWLDTINILAE 230 (393)
Q Consensus 208 LVvPg~~G~~~VKwL~~Iev~~~ 230 (393)
||+|+.+|.+|||||++|||++.
T Consensus 134 lv~P~~~g~k~vK~v~~Iev~~~ 156 (156)
T cd00321 134 LVVPGLYGWKSVKWLRRIEVTDE 156 (156)
T ss_pred EEcCCceeeEcceeeeEEEEEcC
Confidence 99999999999999999999863
No 15
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=100.00 E-value=2.1e-37 Score=269.40 Aligned_cols=125 Identities=44% Similarity=0.791 Sum_probs=94.1
Q ss_pred CCccceeceEEEEEecCCCcccCC--cEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCceee
Q 016226 259 RPLMDFPVQCVICSLEDVNVMKPG--KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAW 336 (393)
Q Consensus 259 ~~i~~~~v~S~I~~P~~g~~v~~g--~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW 336 (393)
.+|++|+|||+|++|.+++.|..| +++|+||||+|+|++|+|||||+|||+||++|+|..+.. |.. ....+|+|
T Consensus 2 ~~i~~~~v~S~I~~P~~~~~v~~~~~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~-~~~---~g~~~~aW 77 (131)
T PF03404_consen 2 YPINEMPVNSVITSPSDGETVKAGDGTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPES-PPR---YGEARWAW 77 (131)
T ss_dssp CB--B---EEEEEESBTTEEEESESEEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSC-CCH---HTS-TTS-
T ss_pred cchhhcCCCEEEEecCCCCEEccCCcEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCC-ccc---ccccCccc
Confidence 478999999999999999999987 899999999998889999999999999999999998853 110 01126999
Q ss_pred EEeEEEEECC---CccEEEEEeEeCCCCCCCCCcccccccccCCCCceEEEEEEEe
Q 016226 337 VFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVG 389 (393)
Q Consensus 337 ~~W~~~~~~~---~~~~i~~RA~D~~G~~QP~~~~~~wN~~G~~~n~~~~v~v~v~ 389 (393)
++|+|+|+++ +.++|+|||+|++|++||+.. +||.+||++|+||+|+|+|.
T Consensus 78 ~~W~~~~~~~~~~G~~~i~~RA~D~~G~~QP~~~--~wN~~G~~~n~~~~v~v~v~ 131 (131)
T PF03404_consen 78 RLWEYDWPPPSLPGEYTIMVRATDESGNVQPEEP--IWNPRGYMNNGWHRVKVTVE 131 (131)
T ss_dssp EEEEEEEEECSHCCEEEEEEEEEETTS-B--SCH--HCHTT-SS--SSEEEEEEE-
T ss_pred ceeeeccCcCccccceEEEEEEeecccccCCCcc--cccccCceeccEEEEEEEEC
Confidence 9999999984 457999999999999999954 59999999999999999984
No 16
>COG2041 Sulfite oxidase and related enzymes [General function prediction only]
Probab=100.00 E-value=6.4e-37 Score=296.23 Aligned_cols=172 Identities=32% Similarity=0.550 Sum_probs=149.4
Q ss_pred CCCCcCCCCceEeccC---CCCcccCCCC-eEEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCcccccccccccc
Q 016226 39 SSYVTPVDFFYKRNHG---PIPIVDDIES-YYVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKG 114 (393)
Q Consensus 39 ~~~iTP~~~~yvr~h~---~~P~~~~~~~-w~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G 114 (393)
+..+|++..+..+.+. ..|.++. ++ |+|+|+|+|++|++||++||++||+.++..+++|++|.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~l~V~G~V~~p~~~t~~dl~~~p~~~~~~~~~Cv~~Ws~---------- 134 (271)
T COG2041 66 QIVTTYFPFYDLGGDKPPAASPEIDL-EKPWRLRVDGLVEKPLTLTYEDLLALPLEERIYTFHCVEGWSM---------- 134 (271)
T ss_pred ccccccccceeeccCCCcccCccccc-cCCeEEEEeeeecCcceecHHHHhhCCcccEEEEEEEecCceE----------
Confidence 3444555544444433 3778866 56 9999999999999999999999999999999999986422
Q ss_pred cccccCcccceeEEcccHHHHHHHcCCCCCCccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEecC
Q 016226 115 VGWDVSAIGNAVWSGAKLADVLELVGIPNLTSVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMN 194 (393)
Q Consensus 115 ~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mN 194 (393)
- ...|+||+|++||+.+|+++ +|++|.|+++|. ..|.++++|+++|++ ++||||+||
T Consensus 135 -----~---~~~W~Gv~l~~lL~~~~p~~-------~A~~V~f~~~d~------~~y~~~l~l~~a~~p--~~llA~~~~ 191 (271)
T COG2041 135 -----V---DAPWTGVPLRELLDRAGPKD-------NAKYVMFHSLDG------PDYTTGLPLDDALHP--LTLLAYGMN 191 (271)
T ss_pred -----e---ecceeeeeHHHHHHHhCcCC-------CCeEEEEEccCc------cccccCCCHHHhcCc--HhhHHHHhc
Confidence 1 12899999999999999996 689999999981 129999999999997 699999999
Q ss_pred CccCCCCCCCcEEEEecCccccccccceeEEEEEeccCCCceeeeccccC
Q 016226 195 GEPLNRDHGYPLRVVVPGVIGARSVKWLDTINILAEECQGFFMQKDYKMF 244 (393)
Q Consensus 195 GepL~~~hG~PlRLVvPg~~G~~~VKwL~~Iev~~~~~~~~~~~~~Y~~~ 244 (393)
|+|||++||||+|||||++||.+++|||.+|+|++++..+||+..+|+..
T Consensus 192 G~~Lp~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~~gy~~~ 241 (271)
T COG2041 192 GEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGYHEY 241 (271)
T ss_pred CccCccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhhcCcccc
Confidence 99999999999999999999999999999999999999999999999874
No 17
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.58 E-value=1.2e-14 Score=124.47 Aligned_cols=121 Identities=21% Similarity=0.307 Sum_probs=101.8
Q ss_pred EEEEEeccCCceeecHHHHhcCccEeEEEEEEeecCCcccccccccccccccccCcccceeEEcccHHHHHHHcCCCCCC
Q 016226 66 YVSICGLIENSKDLFMRDIRMLRKYNITATLQCAGNRRTAMSNVRTVKGVGWDVSAIGNAVWSGAKLADVLELVGIPNLT 145 (393)
Q Consensus 66 ~L~V~G~V~~p~~ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~~~w~GV~L~dlL~~aG~~~~~ 145 (393)
-|+|.-.-..+..||++||.++|.+++.+.+ +|..| +++|+||+|++||+.+|.+
T Consensus 25 ilTiq~ad~~~~~ft~qeLeal~~~T~ete~-------------------Pw~~g---n~rf~Gvsls~Ll~~l~ak--- 79 (155)
T COG3915 25 ILTIQIADGPTVSFTLQELEALPDETIETET-------------------PWTQG---NTRFKGVSLSALLAWLGAK--- 79 (155)
T ss_pred eEEEEecCCCceeecHHHHhcCCcceEEEec-------------------CcccC---ceeecceeHHHHHHHhhcc---
Confidence 4666633345677999999999999998753 78776 8999999999999999966
Q ss_pred ccccCCceEEEEEEccCccccCCCCeEEEEechhhcCCCCCEEEEEecCCccCCCCCCCcEEEEecCc---------ccc
Q 016226 146 SVTRSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGV---------IGA 216 (393)
Q Consensus 146 ~~~~~~a~~V~f~~~D~~~~~~~~~Y~~sipl~~~~~~~~~vlLAy~mNGepL~~~hG~PlRLVvPg~---------~G~ 216 (393)
.+.|.|.+++ +|.+.||.+++-.. +.||||.+||.++...|.+|+.+|.|-. |-.
T Consensus 80 ------~tslt~iALN--------dY~a~Ip~sDi~ky--npIlA~~~nGn~M~IRerGPl~~IYplds~peL~nqvyys 143 (155)
T COG3915 80 ------QTSLTVIALN--------DYWAEIPYSDIEKY--NPILAIQNNGNYMQIRERGPLWSIYPLDSSPELDNQVYYS 143 (155)
T ss_pred ------CcceEEEEec--------ceeccCcHHHhhhc--ccEEEEEeCCcEEEEeccCceEEEeecCCChhhhhhhhhh
Confidence 3678999997 89999999998664 7999999999999999999999999964 556
Q ss_pred ccccceeEEEE
Q 016226 217 RSVKWLDTINI 227 (393)
Q Consensus 217 ~~VKwL~~Iev 227 (393)
|.|--+++|++
T Consensus 144 r~vWQissi~i 154 (155)
T COG3915 144 RMVWQISSIEI 154 (155)
T ss_pred hheeeeeeEEe
Confidence 77777777775
No 18
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=95.79 E-value=0.0062 Score=31.44 Aligned_cols=11 Identities=55% Similarity=1.114 Sum_probs=8.7
Q ss_pred EEeCCCCCceE
Q 016226 303 ISVDGGKNWVE 313 (393)
Q Consensus 303 VS~DgG~tW~~ 313 (393)
.|.|+|+||+.
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 69999999974
No 19
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=88.86 E-value=4.3 Score=32.96 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=55.0
Q ss_pred EEEEecCCCcccCCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCceeeEEeEEEEECC--
Q 016226 269 VICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIP-- 346 (393)
Q Consensus 269 ~I~~P~~g~~v~~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~~-- 346 (393)
.|+.|..|+.|.. +++|+|.|-.- .+-..++|.-+.|+.=.+....-..+ .-+|-.|+..+..+
T Consensus 4 ~V~~P~pg~~V~s-p~~V~G~A~~F--Egtv~~rv~D~~g~vl~e~~~~a~~g-----------~~~~g~F~~tv~~~~~ 69 (88)
T PF10648_consen 4 WVTAPAPGDTVSS-PVKVSGKARVF--EGTVNIRVRDGHGEVLAEGFVTATGG-----------APSWGPFEGTVSFPPP 69 (88)
T ss_pred EEcCCCCcCCcCC-CEEEEEEEEEe--eeEEEEEEEcCCCcEEEEeeEEeccC-----------CCcccceEEEEEeCCC
Confidence 4789999999986 79999999876 35888889777775432222211111 45899999999873
Q ss_pred --CccEEEEEeEeCCC
Q 016226 347 --HSTQIVAKAVDTAA 360 (393)
Q Consensus 347 --~~~~i~~RA~D~~G 360 (393)
+.++|.+...|..+
T Consensus 70 ~~~~g~l~v~~~s~~d 85 (88)
T PF10648_consen 70 PPGKGTLEVFEDSAKD 85 (88)
T ss_pred CCCceEEEEEEeCCCC
Confidence 34578887777654
No 20
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=85.61 E-value=6.4 Score=34.44 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=56.2
Q ss_pred EecCCCcccCC-cEEEEEEEEeCCCCCeEEEEEEe--------CC------CCCceEeecCCcCCCCccccCCCCCceee
Q 016226 272 SLEDVNVMKPG-KAKVSGYAVSGGGRGIERVDISV--------DG------GKNWVEASRYQKTGIPYIADHMSSDKWAW 336 (393)
Q Consensus 272 ~P~~g~~v~~g-~v~i~G~A~sGgg~~V~rVEVS~--------Dg------G~tW~~A~l~~~~~~p~~~~~~~~~~~aW 336 (393)
.|.+.+++..| .+.++.-.-+ ..+|..++|.+ .+ .+.|.--+.-.-.+ +..-.=
T Consensus 25 ~p~~~~~~~~G~~ihfe~~i~d--~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~---------g~~~~~ 93 (132)
T PF15418_consen 25 FPENCKVATRGDDIHFEADISD--NSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYG---------GKKNYD 93 (132)
T ss_pred CCCCCeEEecCCcEEEEEEEEc--ccceeEEEEEEecCcCcccccccccccccCcEEEEEEcccC---------CcccEe
Confidence 67888888888 6999977665 45799999998 33 45676654321111 011122
Q ss_pred EEeEEEEEC---CCccEEEEEeEeCCCCCCCC
Q 016226 337 VFFEVIIDI---PHSTQIVAKAVDTAANVQPE 365 (393)
Q Consensus 337 ~~W~~~~~~---~~~~~i~~RA~D~~G~~QP~ 365 (393)
..+.++++. +|.|.+++|.+|.+||.+-.
T Consensus 94 ~h~~i~IPa~a~~G~YH~~i~VtD~~Gn~~~~ 125 (132)
T PF15418_consen 94 FHEHIDIPADAPAGDYHFMITVTDAAGNQTEE 125 (132)
T ss_pred EEEeeeCCCCCCCcceEEEEEEEECCCCEEEE
Confidence 356666665 56789999999999998754
No 21
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=84.97 E-value=1.1 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.1
Q ss_pred EeEEEEEC--CCccEEEEEeEeCCCCCCCC
Q 016226 338 FFEVIIDI--PHSTQIVAKAVDTAANVQPE 365 (393)
Q Consensus 338 ~W~~~~~~--~~~~~i~~RA~D~~G~~QP~ 365 (393)
.|++.++. .+.+.|.++|+|.+||+...
T Consensus 13 ~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 13 NWSFTVPALADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred cEEEeCCCCCCccEEEEEEEEeCCCCCCCc
Confidence 34444443 46689999999999999875
No 22
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=69.07 E-value=13 Score=36.69 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=37.1
Q ss_pred eEEEEEecCCCcccCCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCC
Q 016226 267 QCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ 318 (393)
Q Consensus 267 ~S~I~~P~~g~~v~~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~ 318 (393)
+..+..|..|..+..|++.+-.+.....+.....+-+|-|+|+||+......
T Consensus 142 ~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~ 193 (351)
T cd00260 142 AALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVN 193 (351)
T ss_pred eEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCC
Confidence 3445556666667778877666666544456888999999999998776544
No 23
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=67.44 E-value=13 Score=29.56 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=23.7
Q ss_pred ecCCCcccCCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEee
Q 016226 273 LEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEAS 315 (393)
Q Consensus 273 P~~g~~v~~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~ 315 (393)
|..|..+..|.+.+. .++-| ..+|.|+|||++|+..+
T Consensus 13 P~pga~i~~g~l~~n-~~~pg-----~~i~Yt~dgg~~w~~Y~ 49 (78)
T cd02847 13 PVPGAKVENGKLEMN-VSLPG-----LTLQYSTDGGKNWNIYD 49 (78)
T ss_pred CCCCeEEEcCEEEEe-ccCCC-----cEEEEEecCCccCeecc
Confidence 344555555543332 36653 35899999999999864
No 24
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=60.35 E-value=7.8 Score=26.88 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.6
Q ss_pred cEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeec
Q 016226 283 KAKVSGYAVSGGGRGIERVDISVDGGKNWVEASR 316 (393)
Q Consensus 283 ~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l 316 (393)
.++|+++-.+.+..+|+++++ ++|.+|..+++
T Consensus 12 ~iti~~~f~~~~~~~Ie~i~F--aDGt~w~~~~I 43 (43)
T PF06594_consen 12 SITIKNWFSSDGSYRIEQIEF--ADGTVWTRAQI 43 (43)
T ss_pred EEEEeeeECccCCCcEeEEEE--cCCCEecHHHC
Confidence 699999876654678998775 67899987754
No 25
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=51.29 E-value=27 Score=38.43 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=32.8
Q ss_pred CeEEEE-EEeCCCCCceEeecCCcCCCCccccCCCCCceeeEEeEEEEEC-CCc-cEEEEE
Q 016226 297 GIERVD-ISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-PHS-TQIVAK 354 (393)
Q Consensus 297 ~V~rVE-VS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~-~~~-~~i~~R 354 (393)
--..|| ||+|||.||+.-....... +. ......-.|+.-+|+++. .+. .+|..|
T Consensus 383 Dy~~VevvStdGg~Twt~~~g~~~~~-~~---~~~~~sg~Wv~~~~DLSayAGqtV~LrFr 439 (645)
T PF05547_consen 383 DYAYVEVVSTDGGKTWTPLPGNTTGN-GN---PNGGSSGGWVDASFDLSAYAGQTVQLRFR 439 (645)
T ss_pred ceEEEEEEEcCCCceeEecCcccccc-CC---CCCCCccceeEeEeccccccCCeEEEEEE
Confidence 466899 9999999998755432211 11 011111359999999987 333 356666
No 26
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=48.51 E-value=17 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.3
Q ss_pred EeEEEEEC---CCccEEEEEeEeCCCCCCC
Q 016226 338 FFEVIIDI---PHSTQIVAKAVDTAANVQP 364 (393)
Q Consensus 338 ~W~~~~~~---~~~~~i~~RA~D~~G~~QP 364 (393)
.|...++- .+.++|.++++|.+||.--
T Consensus 11 ~~~~~~P~~~~dg~yt~~v~a~D~AGN~~~ 40 (60)
T PF12245_consen 11 VWSTVIPENDADGEYTLTVTATDKAGNTSS 40 (60)
T ss_pred ceeccccCccCCccEEEEEEEEECCCCEEE
Confidence 34444443 3457999999999999764
No 27
>COG4719 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.95 E-value=10 Score=33.90 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=22.0
Q ss_pred ccCC-cEEEEEEEEeCCCCCeEEEEEEeCCCCCceEe
Q 016226 279 MKPG-KAKVSGYAVSGGGRGIERVDISVDGGKNWVEA 314 (393)
Q Consensus 279 v~~g-~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A 314 (393)
|+.+ .+...|.+.+ .-...|||+|||+||+.-
T Consensus 96 ip~~t~yv~a~~dva----~ka~~~~sIDgG~sf~~n 128 (176)
T COG4719 96 IPSNTSYVDAGRDVA----LKAAFEVSIDGGESFQGN 128 (176)
T ss_pred cCCCcEEEechhhhh----hhhcEEEEecCCcccccC
Confidence 3445 3556665554 245789999999999865
No 28
>TIGR02807 cas6_var CRISPR-associated protein, Cas6-related. Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=42.33 E-value=9.7 Score=35.42 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=17.8
Q ss_pred EEEEEecCCccCCCCCCCcE
Q 016226 187 VLLAYEMNGEPLNRDHGYPL 206 (393)
Q Consensus 187 vlLAy~mNGepL~~~hG~Pl 206 (393)
+=|+|.++|+.||.+|||+|
T Consensus 4 vDl~F~v~g~~lP~DHay~L 23 (190)
T TIGR02807 4 IDLLFPVRGGTVPADHAYML 23 (190)
T ss_pred EEEEeEecCccccccchHHH
Confidence 44899999999999999985
No 29
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=41.68 E-value=42 Score=27.86 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=34.7
Q ss_pred CeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCceeeEEeEEEEECCCccEEEEEeEeCCCCCC
Q 016226 297 GIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQ 363 (393)
Q Consensus 297 ~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~~~~~~i~~RA~D~~G~~Q 363 (393)
=|+.|+|+.+ |+.=-.|++..... ..+ +.+|.+......+|.++.+|..|++-
T Consensus 42 ~I~~v~v~~n-g~~v~~~~~~~siS---------~NP----~l~F~~~~~~~g~l~v~~~Dn~G~~~ 94 (100)
T PF08770_consen 42 FIEEVEVTYN-GKPVFRADWGPSIS---------ENP----YLRFSFKGKKSGTLTVTWTDNKGNSF 94 (100)
T ss_dssp -EEEEEEEET-TEEEEEEEE-TTB----------SS-----EEEEEEEESSSEEEEEEEEETTS-EE
T ss_pred heEEEEEEEC-CEEEEEEEeCCccc---------CCC----cEEEEEecCCCcEEEEEEEECCCCEE
Confidence 4888888874 55666677655421 012 67788887555599999999999863
No 30
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=41.41 E-value=1.5e+02 Score=24.51 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEEeCC--CCCceEeecCCcCCCCccccCCCCCceeeEEeEEEEEC-CCccEEEEEeEe
Q 016226 281 PGKAKVSGYAVSGGGRGIERVDISVDG--GKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDI-PHSTQIVAKAVD 357 (393)
Q Consensus 281 ~g~v~i~G~A~sGgg~~V~rVEVS~Dg--G~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~~-~~~~~i~~RA~D 357 (393)
.|.+.|+ +.++.++.. .++||.+|+ |+.-....+.. .+ .-..|..=+..+.. .+.++|..+...
T Consensus 44 ~g~y~~~-~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~-tg----------~w~~~~~~~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 44 AGTYTLT-IRYANGGGG-GTIELRIDGPDGTLIGTVSLPP-TG----------GWDTWQTVSVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp SEEEEEE-EEEEESSSS-EEEEEEETTTTSEEEEEEEEE--ES----------STTEEEEEEEEEEEESEEEEEEEEESS
T ss_pred CceEEEE-EEEECCCCC-cEEEEEECCCCCcEEEEEEEcC-CC----------CccccEEEEEEEeeCCCeeEEEEEEEC
Confidence 4567777 333433334 899999999 55555555522 22 01234444444554 455688888877
Q ss_pred CCC
Q 016226 358 TAA 360 (393)
Q Consensus 358 ~~G 360 (393)
..+
T Consensus 111 ~~~ 113 (125)
T PF03422_consen 111 GDG 113 (125)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 31
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=38.33 E-value=39 Score=30.32 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=21.0
Q ss_pred EeEEEEEC----CCccEEEE-EeEeCCCCCCC
Q 016226 338 FFEVIIDI----PHSTQIVA-KAVDTAANVQP 364 (393)
Q Consensus 338 ~W~~~~~~----~~~~~i~~-RA~D~~G~~QP 364 (393)
.|.|.|.. .|.+.|.+ +|+|.+||..-
T Consensus 2 ~~~~~fd~~~l~dG~Y~l~~~~a~D~agN~~~ 33 (158)
T PF13750_consen 2 NYTYTFDLSTLPDGSYTLTVVTATDAAGNTST 33 (158)
T ss_pred cEEEEEEeCcCCCccEEEEEEEEEecCCCEEE
Confidence 36777775 35579999 89999999753
No 32
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=37.45 E-value=23 Score=35.33 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=14.1
Q ss_pred EEEEEeCCCCCceEeecCCc
Q 016226 300 RVDISVDGGKNWVEASRYQK 319 (393)
Q Consensus 300 rVEVS~DgG~tW~~A~l~~~ 319 (393)
.+=+|.|||+||+..+...+
T Consensus 254 ~l~~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 254 TLLVSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp -EEEESSTTSS-EE-GGGTT
T ss_pred cEEEeCCCCccceECccccC
Confidence 57789999999999876543
No 33
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=36.65 E-value=2.4e+02 Score=25.22 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=32.6
Q ss_pred CeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCceeeEEeEEE--EECCCccEEEEEeEeCCCCCCCCC
Q 016226 297 GIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVI--IDIPHSTQIVAKAVDTAANVQPES 366 (393)
Q Consensus 297 ~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~--~~~~~~~~i~~RA~D~~G~~QP~~ 366 (393)
.|++|+ ++||.++....|..... .+..+.-...++- .+..+-|+|.|.|+|.+||+--..
T Consensus 81 ~i~sv~--l~Gg~~~d~v~ls~~~~--------~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~~~~s 142 (158)
T PF13750_consen 81 KITSVS--LTGGPASDSVSLSWTNK--------GNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQSTKS 142 (158)
T ss_pred eEEEEE--EECCcccceEEEeeEec--------cCceEEeecccccCCcCCCCeEEEEEEEEecCCCEEEEE
Confidence 455544 47787776665543321 0112322222221 111344799999999999986543
No 34
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=34.11 E-value=2e+02 Score=22.71 Aligned_cols=28 Identities=29% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEeCCCCCeEEEEEEeCCCCCceEeec
Q 016226 289 YAVSGGGRGIERVDISVDGGKNWVEASR 316 (393)
Q Consensus 289 ~A~sGgg~~V~rVEVS~DgG~tW~~A~l 316 (393)
+-+.||...|..|||.-.+...|.....
T Consensus 18 v~n~gG~gdi~~Vevk~~~s~~W~~m~r 45 (82)
T PF01357_consen 18 VKNVGGDGDIKAVEVKQSGSGNWIPMKR 45 (82)
T ss_dssp EEECCTTS-EEEEEEEETTSSS-EE-EE
T ss_pred EEEcCCCccEEEEEEEeCCCCCceEeec
Confidence 3345545479999999888888998764
No 35
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=32.83 E-value=16 Score=34.23 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=16.5
Q ss_pred EEEecCCccCCCCCCCcE
Q 016226 189 LAYEMNGEPLNRDHGYPL 206 (393)
Q Consensus 189 LAy~mNGepL~~~hG~Pl 206 (393)
|+|.++|+.||.+|||+|
T Consensus 3 l~F~i~g~~LP~DH~y~L 20 (195)
T PF09559_consen 3 LVFSIRGKTLPADHAYAL 20 (195)
T ss_pred EEEEeCCcccCcccHHHH
Confidence 789999999999999975
No 36
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=32.47 E-value=63 Score=23.62 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=19.3
Q ss_pred EEEEEC--CCccEEEEEeEeCCCCCCCC
Q 016226 340 EVIIDI--PHSTQIVAKAVDTAANVQPE 365 (393)
Q Consensus 340 ~~~~~~--~~~~~i~~RA~D~~G~~QP~ 365 (393)
++.++. +|.++|.|||.|..|.....
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCcc
Confidence 667776 56689999999999887664
No 37
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=30.48 E-value=1.9e+02 Score=28.48 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=17.7
Q ss_pred eEEEEEEeCCCCCceEeecCCc
Q 016226 298 IERVDISVDGGKNWVEASRYQK 319 (393)
Q Consensus 298 V~rVEVS~DgG~tW~~A~l~~~ 319 (393)
-..+-.|.|+|+||.++.....
T Consensus 222 ~~~~~~S~D~G~tWs~~~~~~~ 243 (351)
T cd00260 222 RRPVYESRDMGTTWTEALGTLS 243 (351)
T ss_pred cEEEEEEcCCCcCcccCcCCcc
Confidence 4568899999999999876443
No 38
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=29.84 E-value=1.7e+02 Score=24.45 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=47.8
Q ss_pred eceEEEEEecCCCcccCCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCCcCCCCccccCCCCCceeeEEeEEEEE
Q 016226 265 PVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIID 344 (393)
Q Consensus 265 ~v~S~I~~P~~g~~v~~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~~~~~p~~~~~~~~~~~aW~~W~~~~~ 344 (393)
-+.|+-.. .++..| .|.+.|+.+||. +-..|..|+|+-+||.+..-..-...+ .....-.+-+|+|.++
T Consensus 8 ~Le~~~~~-~~~~~L-~G~V~V~Nlaye----K~V~VryT~D~W~t~~d~~a~y~~~~~-----~~~~~~~~d~F~F~i~ 76 (113)
T PF03370_consen 8 CLESVSLS-PDQQSL-SGTVRVRNLAYE----KEVTVRYTFDNWRTFSDVPASYVSSCP-----GPSPSGNYDRFSFSIP 76 (113)
T ss_dssp EEEEEEEC---SSEE-EEEEEEE-SSSS----EEEEEEEETSCTSSCCEEEEEEEE--------EESTTSSEEEEEEEEE
T ss_pred EEEEEEEc-CCCCEE-EEEEEEEcCCCC----eEEEEEEeeCCCCceeEEeeEEecccc-----CCCCCCcccEEEEEEE
Confidence 34555544 223333 478899998873 688899999999999776532221000 0001346779999998
Q ss_pred CCC------c-cEEEEEeEe
Q 016226 345 IPH------S-TQIVAKAVD 357 (393)
Q Consensus 345 ~~~------~-~~i~~RA~D 357 (393)
++. . .++++|-.-
T Consensus 77 l~~~~~~~~~~lef~I~Y~~ 96 (113)
T PF03370_consen 77 LPDLLPPEGGRLEFCIRYEV 96 (113)
T ss_dssp -SSE--T-TS-SEEEEEEEE
T ss_pred CCcccccCCceEEEEEEEEe
Confidence 731 2 378888743
No 39
>PF09937 DUF2169: Uncharacterized protein conserved in bacteria (DUF2169); InterPro: IPR018683 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.59 E-value=87 Score=31.02 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=27.7
Q ss_pred CCCcccCC-cEEEEEEEEeCCCCCeEEEEEEeCCCC
Q 016226 275 DVNVMKPG-KAKVSGYAVSGGGRGIERVDISVDGGK 309 (393)
Q Consensus 275 ~g~~v~~g-~v~i~G~A~sGgg~~V~rVEVS~DgG~ 309 (393)
+-...|.+ .+.|.|.||+-+|+++.+++|++.=|.
T Consensus 52 D~~~~Kp~~dvlv~G~A~ap~g~p~~~~~V~v~vg~ 87 (297)
T PF09937_consen 52 DLAPPKPRTDVLVNGHAYAPGGRPVTSWDVRVRVGD 87 (297)
T ss_pred hccCCCCCceEEEEEEEeCCCCCccceEEEEEEEcC
Confidence 33334445 699999999988999999999888774
No 40
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=29.06 E-value=98 Score=29.10 Aligned_cols=37 Identities=35% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCcEEEEEEEEeCCCCCeEEEEEEeCCCCCceEeecCC
Q 016226 281 PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQ 318 (393)
Q Consensus 281 ~g~v~i~G~A~sGgg~~V~rVEVS~DgG~tW~~A~l~~ 318 (393)
.|.+.+..|.-. .+..-..+.+|.|+|+||+......
T Consensus 118 ~G~l~~~~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~ 154 (275)
T PF13088_consen 118 DGRLIAPYYHES-GGSFSAFVYYSDDGGKTWSSGSPIP 154 (275)
T ss_dssp TTEEEEEEEEES-SCEEEEEEEEESSTTSSEEEEEECE
T ss_pred CCCEEEEEeecc-ccCcceEEEEeCCCCceeecccccc
Confidence 566555544443 3457888999999999998887653
No 41
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=25.05 E-value=70 Score=24.19 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=17.4
Q ss_pred CC-cEEEEEEEEeCCCCCeEEEEEEe
Q 016226 281 PG-KAKVSGYAVSGGGRGIERVDISV 305 (393)
Q Consensus 281 ~g-~v~i~G~A~sGgg~~V~rVEVS~ 305 (393)
+| .+|+. +..+|++.+.||.+|=
T Consensus 12 pGVyiTl~--~~p~G~~~LkRVRFSR 35 (59)
T PF08381_consen 12 PGVYITLV--SLPDGGNDLKRVRFSR 35 (59)
T ss_pred CeeEEEEE--ECCCCCeeEEEEEEhh
Confidence 56 35555 7777788999999984
No 42
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=23.01 E-value=1.6e+02 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=27.8
Q ss_pred cceeceEEEEEec--CCCcccCCcEEEEEEEEeCCC
Q 016226 262 MDFPVQCVICSLE--DVNVMKPGKAKVSGYAVSGGG 295 (393)
Q Consensus 262 ~~~~v~S~I~~P~--~g~~v~~g~v~i~G~A~sGgg 295 (393)
..|.+||.+..|- .++.|++|.|++..-|.++..
T Consensus 84 ~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~ 119 (140)
T PF11797_consen 84 MQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKSGKK 119 (140)
T ss_pred CEECCCCeEEeEecCCCcCccCCEEEEEEEEEcCCc
Confidence 4577889888875 468999999999999998644
Done!