Query 016227
Match_columns 393
No_of_seqs 19 out of 21
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 10:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016227.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016227hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dkza1 a.8.4.1 (A:507-603) Dn 50.2 11 0.00081 27.2 4.8 74 263-343 23-96 (97)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 43.5 6.2 0.00045 25.2 2.1 16 8-23 8-23 (30)
3 d1seta1 a.2.7.1 (A:1-110) Sery 40.5 60 0.0043 23.4 10.0 81 238-320 7-87 (110)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 31.6 57 0.0041 22.6 6.0 15 236-250 19-33 (80)
5 d1fqia_ a.91.1.1 (A:) RGS9, RG 28.9 82 0.006 22.9 6.9 73 234-341 61-133 (138)
6 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 28.7 21 0.0015 24.7 3.1 26 232-257 14-39 (77)
7 d2bnxa1 a.118.1.23 (A:133-475) 26.1 99 0.0072 26.2 7.8 81 259-346 173-276 (343)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 25.7 87 0.0063 21.8 6.2 46 236-281 19-72 (88)
9 d2jm5a1 a.91.1.1 (A:3-134) Reg 24.1 1.2E+02 0.0084 21.6 6.9 37 293-341 93-129 (132)
10 d2fbha1 a.4.5.28 (A:8-144) Tra 21.2 1E+02 0.0073 21.8 5.9 54 222-276 84-137 (137)
11 d1nkpb_ a.38.1.1 (B:) Max prot 20.8 1.2E+02 0.009 20.7 6.4 15 236-250 15-29 (83)
12 d1fpoa1 a.2.3.1 (A:1-76) HSC20 20.2 81 0.0059 21.2 4.9 44 231-274 13-62 (76)
No 1
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=50.22 E-value=11 Score=27.22 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=47.1
Q ss_pred HHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCHHHHHHHHh
Q 016227 263 TKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFEV 342 (393)
Q Consensus 263 ~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekDa~VYN~LQqQLKlSpAYKkMlE~ 342 (393)
...+|++||++..=...+++.+.-.+..|+...+. +|-+.|..|+.-.+ ..|...++...+.|+ .+..+++|.
T Consensus 23 ~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~---~i~~~i~~l~~~l~--~~d~~~i~~~~~~L~--~~~~~l~e~ 95 (97)
T d1dkza1 23 FEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKT---AIESALTALETALK--GEDKAAIEAKMQELA--QVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHH---HHHHHHHHHHHHHT--SSCHHHHHHHHHHHH--HHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH---HHHHHHHHHHHHHh--cCCHHHHHHHHHHHH--HHHHHHHHh
Confidence 45689999999887777777776666666655444 45555555544333 347777777777765 345555555
Q ss_pred h
Q 016227 343 C 343 (393)
Q Consensus 343 g 343 (393)
+
T Consensus 96 a 96 (97)
T d1dkza1 96 A 96 (97)
T ss_dssp H
T ss_pred h
Confidence 4
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=43.49 E-value=6.2 Score=25.24 Aligned_cols=16 Identities=38% Similarity=0.972 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 016227 8 LFMLLVISFFFLTIFF 23 (393)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (393)
+....+|..||..|||
T Consensus 8 ~ifac~i~lfffaiff 23 (30)
T d2axtt1 8 FIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444567777778887
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=40.48 E-value=60 Score=23.37 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhh
Q 016227 238 IKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLE 317 (393)
Q Consensus 238 IkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLe 317 (393)
|.+-.+........+..++ +|.+|+ .|-..|.+|+++.+.+|..-.....-..++.....+-|.+++..|-.+.+.|+
T Consensus 7 ir~n~e~v~~~l~~R~~~~-~ld~i~-~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le 84 (110)
T d1seta1 7 LRQEPEVFHRAIREKGVAL-DLEALL-ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (110)
T ss_dssp HHHCHHHHHHHHHHTTCCC-CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCcc-CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455554 254444 57789999999999999876554444455555555556666665555555555
Q ss_pred hhH
Q 016227 318 EDV 320 (393)
Q Consensus 318 kDa 320 (393)
+..
T Consensus 85 ~~~ 87 (110)
T d1seta1 85 EAL 87 (110)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.60 E-value=57 Score=22.63 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhc
Q 016227 236 RKIKELYHQLVQSCE 250 (393)
Q Consensus 236 RRIkeqYDELvran~ 250 (393)
.+|++.|++|..+.-
T Consensus 19 ~~in~~~~~L~~llP 33 (80)
T d1am9a_ 19 SSINDKIIELKDLVV 33 (80)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC
Confidence 468999999987764
No 5
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.94 E-value=82 Score=22.86 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Q 016227 234 TQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQ 313 (393)
Q Consensus 234 tQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~Eq 313 (393)
++-.....|+.-+.....+.+.+.. ..|+++.+. +.+++...|++....|+++
T Consensus 61 ~~~~a~~Iy~~yi~~~s~~~vni~~---------~~r~~i~~~--------------~~~~~~~~F~~aq~~V~~~---- 113 (138)
T d1fqia_ 61 VKEKAEEIYKLFLAPGARRWINIDG---------KTMDITVKG--------------LKHPHRYVLDAAQTHIYML---- 113 (138)
T ss_dssp HHHHHHHHHHHHTSTTCTTCCCCCH---------HHHHHHHHH--------------TTSCCTTTTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHccccccccCCCH---------HHHHHHHHH--------------cCCCCHHHHHHHHHHHHHH----
Confidence 4455667777777665555554442 234443322 2456788999999999876
Q ss_pred HhhhhhHHHHHHHHHHhccCHHHHHHHH
Q 016227 314 RRLEEDVYVYNWLQDQLRLSPACKKMFE 341 (393)
Q Consensus 314 kRLekDa~VYN~LQqQLKlSpAYKkMlE 341 (393)
|++|. | .....|+.|++++.
T Consensus 114 --l~~~~--~----~~Fl~S~~y~~~l~ 133 (138)
T d1fqia_ 114 --MKKDS--Y----ARYLKSPIYKEMLA 133 (138)
T ss_dssp --HHHHT--H----HHHHTSHHHHHHHH
T ss_pred --HHHhH--H----HhHhcCHHHHHHHH
Confidence 44442 2 23456999999874
No 6
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.73 E-value=21 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHhhhccCcchHH
Q 016227 232 SATQRKIKELYHQLVQSCESNELTLA 257 (393)
Q Consensus 232 sAtQRRIkeqYDELvran~aK~LTLa 257 (393)
.|++..|+.+|..|+....-.+..-.
T Consensus 14 ~as~~eIk~ay~~l~~~~hPD~~~~~ 39 (77)
T d1hdja_ 14 GASDEEIKRAYRRQALRYHPDKNKEP 39 (77)
T ss_dssp TCCHHHHHHHHHHHHHTTCTTTCCCT
T ss_pred CcCHHHHHHHHHHHHHHhccccccch
Confidence 57888999999999998886655433
No 7
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.15 E-value=99 Score=26.22 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=48.8
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHh--------hcCCcchHHHHHHHHHHHHHHHHh---------------
Q 016227 259 VGEFTKCLAQAREELEDKSETIKRKFSIQKALL--------SKADRSSIDRLRQQIYNLEKQQRR--------------- 315 (393)
Q Consensus 259 V~eF~NcLVdARnEL~~KSE~iqRkftI~KALL--------skadRSS~DRL~qQIykLE~EqkR--------------- 315 (393)
.-.|+|+||.. .+.++-++.|+.-|. .+-+....+.|-.||.+.+.+...
T Consensus 173 ~m~lIN~li~~-------~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~~f~~~~~~D~~el~~~~~~~~~d 245 (343)
T d2bnxa1 173 CLQLINALITP-------AEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRME 245 (343)
T ss_dssp HHHHHHHHHTT-------CSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------cccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHHHHHHHHHHHHhHHHHHHhcccccccc
Confidence 45689999853 223333333333222 222334567888888887643211
Q ss_pred hhhhHHHHHHHHHHhccCHHHHHHHHhhhhh
Q 016227 316 LEEDVYVYNWLQDQLRLSPACKKMFEVCADM 346 (393)
Q Consensus 316 LekDa~VYN~LQqQLKlSpAYKkMlE~ga~~ 346 (393)
+..-..+|+-|.++.+-+|++.-++-+=+..
T Consensus 246 ~~~~~~~~~~l~~~~~~t~~e~~flSilQhL 276 (343)
T d2bnxa1 246 MDDFGEVFQIILNTVKDSKAEPHFLSILQHL 276 (343)
T ss_dssp CCCHHHHHHHHHHHHTTSTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 1112468999999999999998777666554
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.66 E-value=87 Score=21.76 Aligned_cols=46 Identities=9% Similarity=0.253 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhc----cCcc----hHHHHHHHHHhHHHHHHHHhhhhhhhh
Q 016227 236 RKIKELYHQLVQSCE----SNEL----TLAQVGEFTKCLAQAREELEDKSETIK 281 (393)
Q Consensus 236 RRIkeqYDELvran~----aK~L----TLaQV~eF~NcLVdARnEL~~KSE~iq 281 (393)
.+|++.|++|-.+.- ..+. .|.+..+|+..|-..-.+|..+-+.++
T Consensus 19 ~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~ 72 (88)
T d1nkpa_ 19 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999987632 2333 344556666666555555544444333
No 9
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.07 E-value=1.2e+02 Score=21.60 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=26.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCHHHHHHHH
Q 016227 293 KADRSSIDRLRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPACKKMFE 341 (393)
Q Consensus 293 kadRSS~DRL~qQIykLE~EqkRLekDa~VYN~LQqQLKlSpAYKkMlE 341 (393)
++...-|+...++|+++ |+.|. | .....|+.|+.+++
T Consensus 93 ~~~~~~F~~aq~~V~~~------l~~~~--y----p~Fl~S~~y~~ll~ 129 (132)
T d2jm5a1 93 QPTLHSFDAAQSRVYQL------MEQDS--Y----TRFLKSDIYLDLME 129 (132)
T ss_dssp SCCTTTTHHHHHHHHHH------HHHHH--H----HHHHTSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH------HHhhh--h----hhhccCHHHHHHHc
Confidence 45667899999999876 44442 2 34567999999875
No 10
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.17 E-value=1e+02 Score=21.80 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=43.4
Q ss_pred CCCCcccccchhHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhh
Q 016227 222 GCLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDK 276 (393)
Q Consensus 222 ~c~yPfTS~~sAtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~K 276 (393)
....=+|.-+.++-.++.+.+..+....-+ .++-.++..|...|-..+..|.+|
T Consensus 84 ~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~l~~~l~~r 137 (137)
T d2fbha1 84 AKHIVLTPKADVLIADIEAIAASVRNDVLT-GIDESEQALCQQVLLRILANLENR 137 (137)
T ss_dssp SCEEEECTTHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhCc
Confidence 335567778888888898888887766544 699999999999999888888765
No 11
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.79 E-value=1.2e+02 Score=20.70 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhc
Q 016227 236 RKIKELYHQLVQSCE 250 (393)
Q Consensus 236 RRIkeqYDELvran~ 250 (393)
.+|++.|++|-.+--
T Consensus 15 ~~in~~f~~L~~llP 29 (83)
T d1nkpb_ 15 DHIKDSFHSLRDSVP 29 (83)
T ss_dssp HHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHhC
Confidence 479999999987764
No 12
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=20.22 E-value=81 Score=21.21 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHhhhccCcch---HH---HHHHHHHhHHHHHHHHh
Q 016227 231 GSATQRKIKELYHQLVQSCESNELT---LA---QVGEFTKCLAQAREELE 274 (393)
Q Consensus 231 ~sAtQRRIkeqYDELvran~aK~LT---La---QV~eF~NcLVdARnEL~ 274 (393)
+.+.+..|+++|.+|++...--+.+ .. ...++...+.+|.+-|-
T Consensus 13 ~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~ 62 (76)
T d1fpoa1 13 YQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62 (76)
T ss_dssp SCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566899999999999988754432 11 12344445555555554
Done!