BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016228
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 36/228 (15%)
Query: 85 ISDGEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQF 144
I D + VEA GK++ ++ G WT ++ + L + E + +N H+ S +
Sbjct: 111 IRDQKARVEAEGGKAL-VLDGGDTWT--NSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWT 167
Query: 145 CQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAI-- 202
+ VE+L+ + + G L Y + D + A + +GP A+
Sbjct: 168 LGRERVEELLGLFR-----GEFLSYNIVDDLFGDPLFPAYRI------HRVGPYALAVVG 216
Query: 203 ASHLGVSPSGLPRGAPGRNFPLSEEYFR------RIEAIEFTI------KQDDGALPQNL 250
AS+ V S G +F L E + R E + Q D AL + +
Sbjct: 217 ASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERI 276
Query: 251 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVD 298
+ D+ILSG + L + ++V IV G K+L +VD
Sbjct: 277 RGIDLILSGHTHD--------LTPRPWRVGKTWIVAGSAAGKALMRVD 316
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 39 PQLNRWSRARAVRSGRKLDRLGHRSPQSSVNF--KVRDRDGVDLEPERISDGEDNVEAME 96
P + RW R +++G+K+D P S+++ V G L +RI DG D + +E
Sbjct: 358 PGILRW--PRVIQAGQKIDE-----PTSNMDIFPTVAKLAGAPLPEDRIIDGRDLMPLLE 410
Query: 97 GKS 99
GKS
Sbjct: 411 GKS 413
>pdb|1YA0|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Smg7
pdb|1YA0|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Smg7
Length = 497
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 309 PLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF 350
P +++KA +++L RDE+++ + D+++ ++F G ++
Sbjct: 220 PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY 261
>pdb|3E7D|A Chain A, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|B Chain B, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|C Chain C, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|D Chain D, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
Length = 212
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 167 LVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPR 215
++YTL+DPS+ E AKK + D+ P E +G +P+ L R
Sbjct: 98 VIYTLSDPSVPELAKKIGNTRSAAALDLWLPHIEGSIVAIGNAPTALFR 146
>pdb|4F9D|A Chain A, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
pdb|4F9D|B Chain B, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
Length = 618
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 325 FRDEIRSNYSEM-DYVREELEFAGRIFAQNPVWPVIEVTGKAIEE 368
+R+ IR + +M +Y+R ++E +F VWP E G AIEE
Sbjct: 185 YRERIRLDAVKMTEYLRTKVEVNPHVF----VWPYGEANGIAIEE 225
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 127 VDRNCAVNTHLFS--GLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTL--ADPSMAESAKK 182
V +N A+ +S + I DV +++ A +GA V T+ P + K
Sbjct: 302 VAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKV 361
Query: 183 ACELWGIPSTDVLGPITEAIA 203
AC ++ IP V G + E A
Sbjct: 362 ACAVFSIPPMGVCGYVEEDAA 382
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 127 VDRNCAVNTHLFS--GLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTL--ADPSMAESAKK 182
V +N A+ +S + I DV +++ A +GA V T+ P + K
Sbjct: 302 VAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKV 361
Query: 183 ACELWGIPSTDVLGPITEAIA 203
AC ++ IP V G + E A
Sbjct: 362 ACAVFSIPPMGVCGYVEEDAA 382
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 127 VDRNCAVNTHLFS--GLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTL--ADPSMAESAKK 182
V +N A+ +S + I DV +++ A +GA V T+ P + K
Sbjct: 303 VAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKV 362
Query: 183 ACELWGIPSTDVLGPITEAIA 203
AC ++ IP V G + E A
Sbjct: 363 ACAVFSIPPMGVCGYVEEDAA 383
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 127 VDRNCAVNTHLFS--GLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTL--ADPSMAESAKK 182
V +N A+ +S + I DV +++ A +GA V T+ P + K
Sbjct: 303 VAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKV 362
Query: 183 ACELWGIPSTDVLGPITEAIA 203
AC ++ IP V G + E A
Sbjct: 363 ACAVFSIPPMGVCGYVEEDAA 383
>pdb|3VUS|A Chain A, Escherichia Coli Pgab N-terminal Domain
pdb|3VUS|B Chain B, Escherichia Coli Pgab N-terminal Domain
Length = 268
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 325 FRDEIRSNYSEM-DYVREELEFAGRIFAQNPVWPVIEVTGKAIEE 368
+R+ IR + +M +Y+R ++E +F VWP E G AIEE
Sbjct: 181 YRERIRLDAVKMTEYLRTKVEVNPHVF----VWPYGEANGIAIEE 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,660,409
Number of Sequences: 62578
Number of extensions: 480763
Number of successful extensions: 1255
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 15
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)