Query 016228
Match_columns 393
No_of_seqs 141 out of 617
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:58:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05339 PEP synthetase regula 100.0 2E-105 3E-110 771.7 32.7 265 95-381 2-266 (269)
2 PF03618 Kinase-PPPase: Kinase 100.0 1E-104 2E-109 761.2 29.3 255 100-374 1-255 (255)
3 COG1806 Uncharacterized protei 100.0 4.1E-95 9E-100 695.8 29.0 270 96-382 2-271 (273)
4 PRK13947 shikimate kinase; Pro 97.7 0.0006 1.3E-08 59.8 11.9 120 254-378 3-167 (171)
5 PRK04220 2-phosphoglycerate ki 97.5 0.00061 1.3E-08 68.1 10.0 89 287-381 197-292 (301)
6 PRK03839 putative kinase; Prov 97.3 0.0018 3.9E-08 57.8 9.5 117 255-380 3-154 (180)
7 COG1936 Predicted nucleotide k 97.0 0.0027 5.9E-08 59.5 8.0 112 255-379 3-156 (180)
8 PRK03731 aroL shikimate kinase 97.0 0.0062 1.3E-07 53.7 9.9 119 255-378 5-169 (171)
9 PRK05057 aroK shikimate kinase 96.9 0.012 2.7E-07 53.1 10.9 115 255-379 7-171 (172)
10 PRK05416 glmZ(sRNA)-inactivati 96.8 0.0098 2.1E-07 58.9 10.3 115 255-379 9-160 (288)
11 PRK04040 adenylate kinase; Pro 96.7 0.011 2.4E-07 54.5 9.6 116 255-377 5-187 (188)
12 PRK14738 gmk guanylate kinase; 96.7 0.023 4.9E-07 52.7 11.5 136 246-383 3-198 (206)
13 PRK04182 cytidylate kinase; Pr 96.6 0.016 3.5E-07 50.6 9.3 27 255-281 3-30 (180)
14 PRK13477 bifunctional pantoate 96.5 0.021 4.6E-07 60.9 11.3 75 298-379 420-503 (512)
15 PRK13808 adenylate kinase; Pro 96.5 0.022 4.7E-07 57.9 10.5 123 255-380 3-194 (333)
16 TIGR02173 cyt_kin_arch cytidyl 96.3 0.026 5.7E-07 49.0 9.1 27 255-281 3-30 (171)
17 PRK13949 shikimate kinase; Pro 96.3 0.03 6.6E-07 50.6 9.5 115 255-376 4-168 (169)
18 PRK00131 aroK shikimate kinase 96.1 0.057 1.2E-06 46.7 10.0 30 348-378 141-170 (175)
19 PRK14532 adenylate kinase; Pro 95.9 0.05 1.1E-06 48.8 8.7 28 255-282 3-31 (188)
20 PRK13946 shikimate kinase; Pro 95.8 0.084 1.8E-06 47.9 9.9 26 255-280 13-39 (184)
21 PRK02496 adk adenylate kinase; 95.7 0.094 2E-06 47.0 9.9 112 255-377 4-182 (184)
22 cd00227 CPT Chloramphenicol (C 95.7 0.034 7.5E-07 49.7 6.8 22 356-377 153-174 (175)
23 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.17 3.7E-06 44.9 10.9 116 255-377 2-182 (183)
24 PRK12339 2-phosphoglycerate ki 95.2 0.099 2.1E-06 48.9 8.5 72 302-377 122-195 (197)
25 PLN02200 adenylate kinase fami 95.2 0.23 5.1E-06 47.4 11.1 117 255-380 46-225 (234)
26 TIGR01360 aden_kin_iso1 adenyl 95.2 0.33 7.2E-06 42.8 11.4 117 255-378 6-186 (188)
27 PRK08154 anaerobic benzoate ca 95.1 0.15 3.3E-06 50.4 9.9 124 254-379 135-301 (309)
28 PRK13948 shikimate kinase; Pro 94.9 0.28 6E-06 45.5 10.6 114 253-379 11-175 (182)
29 PLN02199 shikimate kinase 94.7 0.54 1.2E-05 47.5 12.7 148 217-380 77-289 (303)
30 PRK06762 hypothetical protein; 94.7 0.13 2.7E-06 45.2 7.3 25 357-381 142-166 (166)
31 TIGR00682 lpxK tetraacyldisacc 94.5 0.025 5.4E-07 56.7 2.7 29 252-280 27-62 (311)
32 PF13207 AAA_17: AAA domain; P 94.3 0.027 5.9E-07 46.4 2.0 27 255-281 2-29 (121)
33 PRK08233 hypothetical protein; 94.3 0.36 7.8E-06 42.3 9.2 74 299-380 98-178 (182)
34 PF00625 Guanylate_kin: Guanyl 94.2 0.29 6.2E-06 44.1 8.6 123 255-379 5-182 (183)
35 PRK00652 lpxK tetraacyldisacch 94.2 0.033 7.1E-07 56.2 2.7 28 253-280 49-83 (325)
36 TIGR02322 phosphon_PhnN phosph 93.6 0.79 1.7E-05 40.7 10.2 20 255-274 4-23 (179)
37 PRK10078 ribose 1,5-bisphospho 93.5 0.3 6.4E-06 44.2 7.4 41 336-379 136-176 (186)
38 cd01672 TMPK Thymidine monopho 93.5 0.72 1.6E-05 40.5 9.7 29 255-283 3-35 (200)
39 PRK00023 cmk cytidylate kinase 93.4 0.53 1.2E-05 44.6 9.2 24 357-380 199-222 (225)
40 PRK01906 tetraacyldisaccharide 93.0 0.066 1.4E-06 54.3 2.6 30 252-281 55-91 (338)
41 TIGR00017 cmk cytidylate kinas 92.9 0.64 1.4E-05 44.0 9.0 24 255-278 5-29 (217)
42 PRK14530 adenylate kinase; Pro 92.8 1.4 3E-05 40.8 10.9 27 254-280 5-32 (215)
43 PF02606 LpxK: Tetraacyldisacc 92.7 0.11 2.3E-06 52.4 3.8 40 241-280 23-69 (326)
44 PRK00625 shikimate kinase; Pro 92.7 1.2 2.6E-05 40.8 10.2 115 255-377 3-171 (173)
45 cd00464 SK Shikimate kinase (S 92.6 0.31 6.7E-06 41.6 5.9 27 255-281 2-29 (154)
46 PRK11860 bifunctional 3-phosph 92.5 1.6 3.4E-05 47.8 12.5 69 303-379 578-655 (661)
47 PRK14528 adenylate kinase; Pro 92.2 0.42 9E-06 43.7 6.5 115 255-376 4-185 (186)
48 COG1663 LpxK Tetraacyldisaccha 92.1 0.11 2.4E-06 53.0 3.0 29 252-280 46-81 (336)
49 PF03668 ATP_bind_2: P-loop AT 91.9 0.9 1.9E-05 45.6 8.9 119 255-380 4-157 (284)
50 smart00072 GuKc Guanylate kina 91.7 2.1 4.5E-05 38.7 10.4 123 255-379 5-182 (184)
51 PRK12297 obgE GTPase CgtA; Rev 91.2 0.57 1.2E-05 49.0 7.1 34 252-285 158-191 (424)
52 PRK13975 thymidylate kinase; P 91.0 1.2 2.6E-05 39.9 8.1 72 299-380 114-191 (196)
53 PRK13951 bifunctional shikimat 90.6 2.1 4.6E-05 45.5 10.7 108 255-375 3-157 (488)
54 COG0703 AroK Shikimate kinase 90.4 1.8 4E-05 40.4 8.9 113 254-379 4-168 (172)
55 PRK14527 adenylate kinase; Pro 90.2 3 6.4E-05 37.8 10.0 71 300-377 113-190 (191)
56 COG1219 ClpX ATP-dependent pro 90.1 0.18 3.9E-06 52.0 2.1 50 226-286 78-127 (408)
57 PRK12337 2-phosphoglycerate ki 89.9 1.8 3.9E-05 46.3 9.5 74 303-380 387-462 (475)
58 PF00899 ThiF: ThiF family; I 89.7 1.5 3.2E-05 37.8 7.2 68 110-195 57-124 (135)
59 PRK14021 bifunctional shikimat 89.0 2.8 6.1E-05 44.9 10.2 118 254-380 8-177 (542)
60 cd01983 Fer4_NifH The Fer4_Nif 89.0 0.32 6.9E-06 37.1 2.4 29 255-283 2-34 (99)
61 PF00004 AAA: ATPase family as 88.7 0.32 6.8E-06 39.9 2.3 24 255-278 1-25 (132)
62 TIGR02729 Obg_CgtA Obg family 88.1 1.4 3E-05 44.4 6.9 35 252-286 157-191 (329)
63 PRK00091 miaA tRNA delta(2)-is 88.0 1.2 2.7E-05 44.6 6.4 26 255-280 7-33 (307)
64 COG1100 GTPase SAR1 and relate 87.9 2.4 5.3E-05 38.1 7.7 115 253-370 6-126 (219)
65 PRK09518 bifunctional cytidyla 87.6 4.2 9.2E-05 44.9 10.8 47 334-380 179-232 (712)
66 KOG0745 Putative ATP-dependent 87.4 0.34 7.4E-06 51.7 2.1 46 237-286 211-256 (564)
67 cd00071 GMPK Guanosine monopho 86.9 0.92 2E-05 39.6 4.2 99 255-367 2-103 (137)
68 PRK14737 gmk guanylate kinase; 86.3 14 0.00031 34.0 11.9 122 255-379 7-184 (186)
69 PLN02796 D-glycerate 3-kinase 86.0 4.6 9.9E-05 41.6 9.3 112 143-284 7-136 (347)
70 PRK12296 obgE GTPase CgtA; Rev 85.5 2.6 5.6E-05 45.3 7.5 53 233-285 136-192 (500)
71 TIGR01313 therm_gnt_kin carboh 85.0 0.57 1.2E-05 40.9 2.0 24 255-278 1-25 (163)
72 PF13521 AAA_28: AAA domain; P 84.9 0.3 6.4E-06 42.9 0.1 28 255-287 2-29 (163)
73 TIGR00176 mobB molybdopterin-g 84.5 0.62 1.4E-05 41.8 2.1 28 255-282 2-33 (155)
74 TIGR03263 guanyl_kin guanylate 84.1 0.82 1.8E-05 40.4 2.6 30 255-284 4-34 (180)
75 PRK06217 hypothetical protein; 84.0 0.75 1.6E-05 41.5 2.3 26 255-280 4-30 (183)
76 PF13238 AAA_18: AAA domain; P 84.0 0.43 9.3E-06 38.9 0.7 22 255-276 1-22 (129)
77 PRK06526 transposase; Provisio 83.7 0.69 1.5E-05 44.9 2.1 49 223-282 80-132 (254)
78 cd01821 Rhamnogalacturan_acety 83.5 4.8 0.0001 36.1 7.3 55 150-204 93-162 (198)
79 cd01428 ADK Adenylate kinase ( 83.3 0.91 2E-05 40.3 2.6 28 255-282 2-30 (194)
80 cd02027 APSK Adenosine 5'-phos 83.1 7.1 0.00015 34.4 8.1 20 255-274 2-21 (149)
81 PRK07261 topology modulation p 82.8 0.91 2E-05 41.0 2.4 26 255-280 3-29 (171)
82 PRK00300 gmk guanylate kinase; 82.8 0.72 1.6E-05 41.7 1.8 21 255-275 8-28 (205)
83 PF07728 AAA_5: AAA domain (dy 82.6 0.98 2.1E-05 38.3 2.4 92 254-381 1-93 (139)
84 cd00757 ThiF_MoeB_HesA_family 82.3 5.6 0.00012 37.5 7.6 80 97-194 62-142 (228)
85 TIGR01351 adk adenylate kinase 82.2 0.97 2.1E-05 41.7 2.4 28 255-282 2-30 (210)
86 COG0190 FolD 5,10-methylene-te 82.0 8.4 0.00018 38.8 9.0 150 94-280 29-184 (283)
87 TIGR01526 nadR_NMN_Atrans nico 81.9 1.5 3.3E-05 44.0 3.8 26 254-279 164-190 (325)
88 TIGR00174 miaA tRNA isopenteny 81.7 3.2 6.9E-05 41.5 5.9 49 255-304 2-60 (287)
89 cd02020 CMPK Cytidine monophos 81.7 1.1 2.3E-05 37.8 2.2 25 255-279 2-27 (147)
90 COG2804 PulE Type II secretory 81.5 2.8 6E-05 45.2 5.7 88 103-208 308-395 (500)
91 cd00009 AAA The AAA+ (ATPases 81.2 1.1 2.5E-05 35.9 2.2 22 254-275 21-42 (151)
92 PF01202 SKI: Shikimate kinase 81.1 8.6 0.00019 34.0 7.9 143 181-377 10-157 (158)
93 cd01483 E1_enzyme_family Super 81.0 6.1 0.00013 34.1 6.8 33 163-195 89-121 (143)
94 PF03808 Glyco_tran_WecB: Glyc 81.0 21 0.00046 32.5 10.6 102 95-210 46-148 (172)
95 PLN02165 adenylate isopentenyl 80.9 1.7 3.8E-05 44.4 3.9 90 255-359 46-138 (334)
96 COG2019 AdkA Archaeal adenylat 80.7 0.31 6.6E-06 46.2 -1.5 59 255-314 7-68 (189)
97 PRK08356 hypothetical protein; 80.5 1.1 2.4E-05 40.9 2.1 24 255-278 8-31 (195)
98 PF08283 Gemini_AL1_M: Geminiv 80.3 0.92 2E-05 39.4 1.4 17 250-266 88-104 (106)
99 PF03205 MobB: Molybdopterin g 80.2 1.1 2.4E-05 39.7 1.9 26 255-280 3-32 (140)
100 PRK00279 adk adenylate kinase; 80.2 1.3 2.8E-05 41.0 2.4 28 255-282 3-31 (215)
101 cd01876 YihA_EngB The YihA (En 79.6 1.3 2.8E-05 36.9 2.1 25 254-278 1-25 (170)
102 PRK00771 signal recognition pa 79.2 1.3 2.9E-05 46.6 2.5 30 253-282 96-129 (437)
103 PRK12299 obgE GTPase CgtA; Rev 78.6 2.8 6.1E-05 42.4 4.5 34 252-285 158-191 (335)
104 PF13401 AAA_22: AAA domain; P 78.5 2.9 6.2E-05 34.5 3.8 104 255-378 7-113 (131)
105 PRK12338 hypothetical protein; 78.1 14 0.0003 37.8 9.2 34 345-381 173-206 (319)
106 TIGR01663 PNK-3'Pase polynucle 77.9 19 0.0004 39.1 10.6 126 153-282 202-400 (526)
107 PRK00889 adenylylsulfate kinas 77.8 15 0.00033 32.5 8.4 20 255-274 7-26 (175)
108 PRK14531 adenylate kinase; Pro 77.7 1.6 3.6E-05 39.4 2.3 27 254-280 4-31 (183)
109 cd01835 SGNH_hydrolase_like_3 77.6 5.4 0.00012 35.4 5.6 49 152-200 100-161 (193)
110 TIGR02355 moeB molybdopterin s 77.2 11 0.00025 36.2 8.0 78 98-193 66-144 (240)
111 cd01394 radB RadB. The archaea 76.4 7.5 0.00016 35.6 6.3 28 248-275 14-42 (218)
112 PF13671 AAA_33: AAA domain; P 76.4 1.8 4E-05 36.4 2.1 27 255-281 2-29 (143)
113 cd04122 Rab14 Rab14 subfamily. 76.4 5.2 0.00011 34.5 5.0 35 254-289 4-38 (166)
114 PRK05690 molybdopterin biosynt 75.9 11 0.00023 36.5 7.4 78 98-193 74-152 (245)
115 TIGR02356 adenyl_thiF thiazole 75.9 12 0.00025 35.0 7.4 42 150-195 102-143 (202)
116 cd04112 Rab26 Rab26 subfamily. 75.9 6.7 0.00015 35.1 5.7 125 255-380 3-165 (191)
117 cd03115 SRP The signal recogni 75.5 1.9 4.2E-05 38.0 2.1 29 255-283 3-35 (173)
118 PRK00081 coaE dephospho-CoA ki 75.4 2.1 4.6E-05 39.3 2.4 27 255-281 5-31 (194)
119 cd02023 UMPK Uridine monophosp 75.3 1.9 4.1E-05 39.0 2.1 21 255-275 2-22 (198)
120 PRK08118 topology modulation p 74.8 2.1 4.5E-05 38.7 2.2 26 255-280 4-30 (167)
121 COG3598 RepA RecA-family ATPas 74.8 7.6 0.00016 40.5 6.3 54 257-327 94-157 (402)
122 PRK08328 hypothetical protein; 74.7 8.6 0.00019 36.7 6.4 78 98-193 69-148 (231)
123 smart00382 AAA ATPases associa 74.4 1.9 4.1E-05 34.0 1.6 21 255-275 5-25 (148)
124 PRK01184 hypothetical protein; 74.3 2.1 4.5E-05 38.2 2.0 27 255-281 4-30 (184)
125 cd01918 HprK_C HprK/P, the bif 74.1 2.5 5.3E-05 38.6 2.4 25 254-278 16-40 (149)
126 PF13433 Peripla_BP_5: Peripla 73.9 15 0.00033 38.1 8.4 74 98-185 135-211 (363)
127 cd02022 DPCK Dephospho-coenzym 73.7 2.4 5.2E-05 38.2 2.3 28 255-282 2-29 (179)
128 cd00984 DnaB_C DnaB helicase C 73.7 24 0.00052 32.6 8.9 29 249-277 9-38 (242)
129 PRK05703 flhF flagellar biosyn 73.6 9.6 0.00021 39.9 6.9 88 254-367 223-313 (424)
130 KOG3327 Thymidylate kinase/ade 73.5 15 0.00032 35.6 7.5 91 271-379 104-195 (208)
131 PLN02924 thymidylate kinase 73.2 12 0.00026 35.6 7.0 73 299-384 136-208 (220)
132 PRK08939 primosomal protein Dn 73.0 3.2 7E-05 41.5 3.2 45 234-283 143-193 (306)
133 TIGR03015 pepcterm_ATPase puta 72.9 6.4 0.00014 36.8 5.0 20 255-274 46-65 (269)
134 PRK13695 putative NTPase; Prov 72.8 30 0.00064 30.8 9.0 29 254-282 2-34 (174)
135 PF02223 Thymidylate_kin: Thym 72.8 13 0.00027 33.3 6.6 68 298-373 118-186 (186)
136 cd02019 NK Nucleoside/nucleoti 72.6 2.8 6.1E-05 32.4 2.2 26 255-280 2-29 (69)
137 PLN02748 tRNA dimethylallyltra 72.1 2.4 5.2E-05 45.2 2.2 28 255-282 25-53 (468)
138 PRK06547 hypothetical protein; 71.9 2.6 5.6E-05 38.6 2.0 21 255-275 17-38 (172)
139 PTZ00088 adenylate kinase 1; P 71.4 2.9 6.3E-05 40.1 2.4 26 255-280 9-35 (229)
140 cd01485 E1-1_like Ubiquitin ac 71.2 18 0.00039 33.7 7.5 81 98-194 61-144 (198)
141 cd02034 CooC The accessory pro 71.2 3.2 7E-05 35.6 2.4 26 255-280 2-31 (116)
142 cd01898 Obg Obg subfamily. Th 71.1 2.8 6.1E-05 35.8 2.0 32 253-284 1-32 (170)
143 PRK12724 flagellar biosynthesi 71.0 13 0.00028 39.5 7.2 20 255-274 226-245 (432)
144 cd03116 MobB Molybdenum is an 70.9 3.1 6.7E-05 37.8 2.3 29 255-283 4-36 (159)
145 PRK08181 transposase; Validate 70.6 3.2 7E-05 40.9 2.6 51 223-284 87-142 (269)
146 PF00448 SRP54: SRP54-type pro 70.4 2.9 6.3E-05 39.0 2.1 19 255-273 4-22 (196)
147 PF04665 Pox_A32: Poxvirus A32 70.2 2.8 6E-05 41.1 2.0 32 254-285 15-47 (241)
148 PRK14729 miaA tRNA delta(2)-is 70.2 3.1 6.8E-05 41.8 2.4 22 255-276 7-28 (300)
149 COG1102 Cmk Cytidylate kinase 70.1 3.6 7.8E-05 38.9 2.6 27 255-281 3-30 (179)
150 COG0563 Adk Adenylate kinase a 69.9 3 6.5E-05 38.5 2.0 21 255-275 3-23 (178)
151 TIGR00455 apsK adenylylsulfate 69.7 20 0.00043 32.1 7.2 22 254-275 20-41 (184)
152 cd01832 SGNH_hydrolase_like_1 69.6 11 0.00025 32.8 5.6 50 150-199 91-156 (185)
153 cd01827 sialate_O-acetylestera 69.6 8.2 0.00018 34.0 4.7 48 151-198 93-158 (188)
154 PRK13974 thymidylate kinase; P 69.6 25 0.00054 32.7 8.1 72 299-379 135-206 (212)
155 PRK10751 molybdopterin-guanine 69.1 3.2 7E-05 38.6 2.1 29 255-283 9-41 (173)
156 TIGR00041 DTMP_kinase thymidyl 68.9 12 0.00025 33.5 5.6 68 299-373 128-195 (195)
157 TIGR01241 FtsH_fam ATP-depende 68.8 3.4 7.4E-05 43.4 2.4 20 255-274 91-110 (495)
158 TIGR02640 gas_vesic_GvpN gas v 68.5 3.7 8E-05 39.6 2.4 28 253-280 22-50 (262)
159 PRK03992 proteasome-activating 68.4 6.2 0.00013 40.5 4.1 47 223-274 135-187 (389)
160 PRK13602 putative ribosomal pr 68.4 22 0.00049 29.0 6.6 53 156-210 19-73 (82)
161 TIGR01242 26Sp45 26S proteasom 68.3 5.4 0.00012 40.1 3.6 47 223-274 126-178 (364)
162 cd01492 Aos1_SUMO Ubiquitin ac 68.3 17 0.00036 34.0 6.6 77 98-193 63-140 (197)
163 PRK03846 adenylylsulfate kinas 67.9 32 0.0007 31.4 8.4 23 253-275 25-47 (198)
164 PRK06067 flagellar accessory p 67.9 2.5 5.4E-05 39.4 1.1 37 248-284 20-61 (234)
165 cd02028 UMPK_like Uridine mono 67.6 3.5 7.6E-05 37.6 2.0 29 255-283 2-34 (179)
166 cd02021 GntK Gluconate kinase 67.3 4.3 9.4E-05 34.8 2.4 21 255-275 2-22 (150)
167 cd01838 Isoamyl_acetate_hydrol 67.3 19 0.00041 31.4 6.5 26 175-200 143-168 (199)
168 PRK07714 hypothetical protein; 67.1 28 0.00062 29.2 7.2 44 165-210 37-80 (100)
169 cd00755 YgdL_like Family of ac 66.8 30 0.00065 33.4 8.2 82 98-196 53-135 (231)
170 cd01896 DRG The developmentall 66.7 6.1 0.00013 37.5 3.5 42 253-294 1-42 (233)
171 cd01840 SGNH_hydrolase_yrhL_li 66.7 67 0.0014 27.9 9.7 90 98-197 24-119 (150)
172 PF01745 IPT: Isopentenyl tran 66.6 3.4 7.5E-05 40.5 1.8 66 255-321 4-85 (233)
173 PRK08762 molybdopterin biosynt 66.3 22 0.00048 36.2 7.6 30 165-194 227-256 (376)
174 PRK07933 thymidylate kinase; V 66.1 34 0.00075 32.1 8.3 73 299-377 133-211 (213)
175 PRK07773 replicative DNA helic 65.6 43 0.00093 38.3 10.4 109 248-379 212-325 (886)
176 TIGR03420 DnaA_homol_Hda DnaA 65.6 3.5 7.6E-05 37.6 1.6 23 253-275 39-61 (226)
177 PF01695 IstB_IS21: IstB-like 65.5 4 8.6E-05 37.4 1.9 51 223-284 29-83 (178)
178 cd04159 Arl10_like Arl10-like 65.5 4.5 9.7E-05 33.3 2.1 24 254-277 1-24 (159)
179 PRK14731 coaE dephospho-CoA ki 65.3 4.7 0.0001 37.5 2.4 27 255-281 8-34 (208)
180 PRK06683 hypothetical protein; 65.2 31 0.00066 28.4 6.9 43 165-209 30-72 (82)
181 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 65.2 15 0.00032 31.5 5.3 26 254-279 4-29 (166)
182 cd00879 Sar1 Sar1 subfamily. 65.2 31 0.00066 30.4 7.4 24 252-275 19-42 (190)
183 cd04175 Rap1 Rap1 subgroup. T 65.0 29 0.00064 29.6 7.1 30 253-283 2-31 (164)
184 TIGR00231 small_GTP small GTP- 65.0 4.6 0.0001 32.6 2.0 34 253-286 2-35 (161)
185 PHA02530 pseT polynucleotide k 64.9 4.8 0.0001 38.7 2.4 21 255-275 5-25 (300)
186 PRK08306 dipicolinate synthase 64.9 12 0.00025 37.2 5.1 94 156-281 87-180 (296)
187 PRK14526 adenylate kinase; Pro 64.9 4.1 9E-05 38.5 1.9 24 255-278 3-27 (211)
188 TIGR00696 wecB_tagA_cpsF bacte 64.6 50 0.0011 30.7 8.9 96 95-205 46-142 (177)
189 PRK14722 flhF flagellar biosyn 64.5 19 0.00042 37.4 6.8 22 253-274 138-159 (374)
190 COG1341 Predicted GTPase or GT 64.1 4.8 0.0001 42.3 2.4 57 236-293 58-121 (398)
191 TIGR03499 FlhF flagellar biosy 63.9 4.8 0.0001 39.5 2.2 21 254-274 196-216 (282)
192 PRK09183 transposase/IS protei 63.8 5 0.00011 38.9 2.3 48 224-282 85-136 (259)
193 PRK10867 signal recognition pa 63.7 4.8 0.0001 42.4 2.4 32 253-284 101-137 (433)
194 TIGR02236 recomb_radA DNA repa 63.6 5.2 0.00011 39.2 2.4 25 249-273 91-116 (310)
195 cd04119 RJL RJL (RabJ-Like) su 63.4 16 0.00035 30.6 5.1 23 255-277 3-25 (168)
196 PRK10792 bifunctional 5,10-met 63.4 93 0.002 31.4 11.2 148 95-279 33-186 (285)
197 PRK12723 flagellar biosynthesi 63.4 4.8 0.0001 41.8 2.3 22 253-274 175-196 (388)
198 PRK14190 bifunctional 5,10-met 63.1 1.2E+02 0.0027 30.5 11.9 149 95-280 32-186 (284)
199 PRK14974 cell division protein 63.1 5.6 0.00012 40.5 2.6 28 254-281 142-173 (336)
200 PRK10528 multifunctional acyl- 63.0 16 0.00036 33.1 5.4 48 150-197 94-151 (191)
201 cd04501 SGNH_hydrolase_like_4 62.9 23 0.0005 31.0 6.2 52 150-201 82-151 (183)
202 PRK13976 thymidylate kinase; P 62.8 19 0.00041 33.9 6.0 72 299-380 125-202 (209)
203 TIGR02880 cbbX_cfxQ probable R 62.5 3.6 7.7E-05 40.4 1.1 26 253-278 59-88 (284)
204 PRK14494 putative molybdopteri 62.1 5.1 0.00011 38.8 2.1 28 255-282 4-35 (229)
205 TIGR00064 ftsY signal recognit 62.0 5.4 0.00012 39.1 2.2 26 255-280 75-104 (272)
206 PF08477 Miro: Miro-like prote 61.6 4.7 0.0001 32.7 1.5 24 255-278 2-25 (119)
207 cd01123 Rad51_DMC1_radA Rad51_ 61.4 4.9 0.00011 37.0 1.7 21 255-275 22-42 (235)
208 cd03114 ArgK-like The function 61.4 6 0.00013 35.2 2.2 26 255-280 2-31 (148)
209 PRK13601 putative L7Ae-like ri 61.4 41 0.0009 27.8 7.0 52 156-209 16-69 (82)
210 cd01124 KaiC KaiC is a circadi 61.0 3.8 8.3E-05 36.0 0.9 26 255-280 2-31 (187)
211 TIGR03881 KaiC_arch_4 KaiC dom 60.7 4.1 8.9E-05 37.6 1.1 36 249-284 16-56 (229)
212 TIGR02237 recomb_radB DNA repa 60.5 7.2 0.00016 35.4 2.6 37 248-284 7-48 (209)
213 PRK14734 coaE dephospho-CoA ki 60.5 6.7 0.00014 36.5 2.4 28 255-282 4-31 (200)
214 PRK08727 hypothetical protein; 60.4 5.9 0.00013 37.5 2.1 31 255-285 44-78 (233)
215 PRK05541 adenylylsulfate kinas 60.3 4.8 0.0001 35.7 1.4 26 355-380 147-173 (176)
216 PRK13973 thymidylate kinase; P 60.2 29 0.00063 32.3 6.7 74 298-380 128-207 (213)
217 smart00178 SAR Sar1p-like memb 60.1 39 0.00084 30.2 7.2 23 253-275 18-40 (184)
218 PRK09361 radB DNA repair and r 60.0 7.3 0.00016 36.0 2.6 37 248-284 18-59 (225)
219 cd01828 sialate_O-acetylestera 60.0 22 0.00048 30.8 5.5 48 151-198 72-134 (169)
220 PRK05428 HPr kinase/phosphoryl 59.9 22 0.00048 36.2 6.2 100 149-278 67-172 (308)
221 KOG0744 AAA+-type ATPase [Post 59.8 6 0.00013 41.3 2.2 43 233-278 160-204 (423)
222 PF09439 SRPRB: Signal recogni 59.6 5 0.00011 37.6 1.5 22 254-275 5-26 (181)
223 COG3839 MalK ABC-type sugar tr 59.5 4.3 9.4E-05 41.6 1.1 19 255-273 32-50 (338)
224 KOG0780 Signal recognition par 59.4 6.9 0.00015 41.6 2.5 41 240-280 86-133 (483)
225 cd01860 Rab5_related Rab5-rela 59.2 23 0.00049 29.9 5.3 25 253-277 2-26 (163)
226 PHA02244 ATPase-like protein 59.2 4.9 0.00011 42.0 1.4 22 254-275 121-142 (383)
227 PF00910 RNA_helicase: RNA hel 59.0 5.1 0.00011 33.3 1.3 21 255-275 1-21 (107)
228 PRK04301 radA DNA repair and r 59.0 8.1 0.00018 38.2 2.9 26 249-274 98-124 (317)
229 PRK12298 obgE GTPase CgtA; Rev 58.9 11 0.00023 39.1 3.9 35 252-286 159-193 (390)
230 PRK05595 replicative DNA helic 58.8 83 0.0018 32.8 10.4 27 248-274 196-223 (444)
231 PRK08533 flagellar accessory p 58.8 7.7 0.00017 36.9 2.6 31 253-283 25-59 (230)
232 PRK14489 putative bifunctional 58.8 6.6 0.00014 39.9 2.3 29 255-283 208-240 (366)
233 PRK14192 bifunctional 5,10-met 58.8 1.3E+02 0.0028 30.1 11.2 145 95-279 33-186 (283)
234 COG0283 Cmk Cytidylate kinase 58.5 66 0.0014 31.6 8.8 68 303-378 142-218 (222)
235 TIGR03600 phage_DnaB phage rep 58.4 2E+02 0.0043 29.6 12.9 26 248-273 189-215 (421)
236 PRK05600 thiamine biosynthesis 58.4 33 0.00072 35.3 7.2 78 98-193 83-161 (370)
237 CHL00200 trpA tryptophan synth 58.1 21 0.00045 35.2 5.5 111 147-260 100-232 (263)
238 PRK14179 bifunctional 5,10-met 57.9 2.1E+02 0.0045 28.9 12.5 149 95-280 32-186 (284)
239 PRK06696 uridine kinase; Valid 57.7 7.7 0.00017 36.2 2.4 27 255-281 25-55 (223)
240 PF12627 PolyA_pol_RNAbd: Prob 57.7 7.9 0.00017 29.1 2.0 34 304-346 1-34 (64)
241 TIGR00679 hpr-ser Hpr(Ser) kin 57.6 27 0.00058 35.6 6.3 102 149-278 67-172 (304)
242 TIGR03574 selen_PSTK L-seryl-t 57.6 6.8 0.00015 37.0 2.0 20 255-274 2-21 (249)
243 cd01822 Lysophospholipase_L1_l 57.4 78 0.0017 27.2 8.5 45 151-195 88-142 (177)
244 TIGR00152 dephospho-CoA kinase 57.2 7.7 0.00017 35.0 2.2 29 255-283 2-31 (188)
245 PRK14495 putative molybdopteri 57.0 7.6 0.00017 41.5 2.4 28 255-282 4-35 (452)
246 COG0552 FtsY Signal recognitio 56.9 8.6 0.00019 39.7 2.7 26 255-280 142-171 (340)
247 PRK06835 DNA replication prote 56.7 10 0.00022 38.4 3.2 44 234-284 172-219 (329)
248 cd01489 Uba2_SUMO Ubiquitin ac 56.4 34 0.00073 34.7 6.8 30 165-194 92-121 (312)
249 PRK14478 nitrogenase molybdenu 56.4 2.3E+02 0.0051 30.1 13.3 169 149-376 103-283 (475)
250 cd01825 SGNH_hydrolase_peri1 S 56.3 33 0.00071 29.9 6.0 51 150-200 80-149 (189)
251 PLN03108 Rab family protein; P 56.2 22 0.00048 32.6 5.1 24 254-277 8-31 (210)
252 TIGR00635 ruvB Holliday juncti 56.0 7.1 0.00015 37.6 1.9 25 254-278 32-57 (305)
253 cd04128 Spg1 Spg1p. Spg1p (se 55.9 18 0.00039 32.5 4.4 35 344-379 130-167 (182)
254 TIGR01650 PD_CobS cobaltochela 55.8 8.2 0.00018 39.5 2.3 46 232-287 54-100 (327)
255 cd06533 Glyco_transf_WecG_TagA 55.7 70 0.0015 29.1 8.2 102 95-210 44-146 (171)
256 cd01834 SGNH_hydrolase_like_2 55.5 38 0.00083 29.3 6.2 29 175-203 134-162 (191)
257 COG4525 TauB ABC-type taurine 55.5 7.2 0.00016 38.4 1.8 31 255-285 34-70 (259)
258 TIGR03029 EpsG chain length de 55.5 18 0.00039 34.5 4.5 110 149-280 16-136 (274)
259 cd01120 RecA-like_NTPases RecA 55.4 7.4 0.00016 32.4 1.7 20 255-274 2-21 (165)
260 TIGR01425 SRP54_euk signal rec 55.4 7.8 0.00017 41.0 2.2 28 253-280 101-132 (429)
261 PRK10416 signal recognition pa 55.3 8.2 0.00018 38.9 2.3 19 255-273 117-135 (318)
262 PRK07878 molybdopterin biosynt 55.3 42 0.0009 34.6 7.4 78 98-193 84-162 (392)
263 PTZ00361 26 proteosome regulat 55.3 7.6 0.00016 41.0 2.1 42 230-275 194-240 (438)
264 PF01583 APS_kinase: Adenylyls 55.2 7.7 0.00017 35.6 1.9 21 255-275 5-25 (156)
265 KOG3354 Gluconate kinase [Carb 54.8 9 0.00019 36.4 2.2 24 255-278 15-39 (191)
266 cd01864 Rab19 Rab19 subfamily. 54.8 26 0.00055 30.0 5.0 20 254-273 5-24 (165)
267 TIGR02881 spore_V_K stage V sp 54.7 7.3 0.00016 37.3 1.7 21 254-274 44-64 (261)
268 cd01122 GP4d_helicase GP4d_hel 54.7 97 0.0021 29.3 9.3 35 248-282 25-65 (271)
269 PRK09267 flavodoxin FldA; Vali 54.6 1E+02 0.0023 27.3 9.0 71 250-321 78-157 (169)
270 PRK06893 DNA replication initi 54.6 8.8 0.00019 36.2 2.2 31 255-285 42-76 (229)
271 TIGR03878 thermo_KaiC_2 KaiC d 54.6 9.1 0.0002 37.0 2.4 36 248-283 31-71 (259)
272 cd01829 SGNH_hydrolase_peri2 S 54.4 33 0.00073 30.4 5.8 48 151-198 95-153 (200)
273 cd01897 NOG NOG1 is a nucleola 54.3 9 0.0002 32.7 2.1 30 255-284 3-32 (168)
274 PLN02840 tRNA dimethylallyltra 54.3 8.6 0.00019 40.6 2.3 25 255-279 24-49 (421)
275 PLN03110 Rab GTPase; Provision 54.1 27 0.00058 32.3 5.3 25 254-278 14-38 (216)
276 PF01926 MMR_HSR1: 50S ribosom 54.1 8.8 0.00019 31.4 1.9 103 254-378 1-105 (116)
277 cd03283 ABC_MutS-like MutS-lik 54.1 10 0.00022 35.2 2.6 25 255-279 28-58 (199)
278 PRK05597 molybdopterin biosynt 54.0 45 0.00097 34.0 7.3 78 98-193 70-148 (355)
279 PF13472 Lipase_GDSL_2: GDSL-l 54.0 38 0.00083 28.1 5.8 48 151-198 89-153 (179)
280 PRK05800 cobU adenosylcobinami 53.9 9.3 0.0002 34.9 2.2 21 255-275 4-24 (170)
281 PRK05201 hslU ATP-dependent pr 53.9 6.5 0.00014 41.9 1.3 31 252-286 50-80 (443)
282 PTZ00202 tuzin; Provisional 53.8 35 0.00076 37.3 6.7 97 233-362 272-368 (550)
283 cd00820 PEPCK_HprK Phosphoenol 53.8 8.9 0.00019 33.2 1.9 19 255-273 18-36 (107)
284 PRK14730 coaE dephospho-CoA ki 53.7 9.2 0.0002 35.4 2.2 28 255-282 4-32 (195)
285 PF02374 ArsA_ATPase: Anion-tr 53.6 35 0.00076 34.0 6.4 66 255-320 4-82 (305)
286 PF02421 FeoB_N: Ferrous iron 53.6 9.8 0.00021 34.8 2.3 32 255-286 3-34 (156)
287 PRK08506 replicative DNA helic 53.5 1.7E+02 0.0037 31.1 11.7 107 248-378 187-298 (472)
288 COG1125 OpuBA ABC-type proline 53.3 6.7 0.00015 39.7 1.2 14 255-268 30-43 (309)
289 PF13479 AAA_24: AAA domain 53.3 7.3 0.00016 36.3 1.4 18 255-272 6-23 (213)
290 COG3842 PotA ABC-type spermidi 53.1 7.7 0.00017 40.0 1.7 56 250-306 28-103 (352)
291 PRK05583 ribosomal protein L7A 53.0 58 0.0013 27.9 6.8 44 165-210 36-79 (104)
292 cd04118 Rab24 Rab24 subfamily. 52.8 9.1 0.0002 33.9 1.9 26 254-279 2-27 (193)
293 TIGR00959 ffh signal recogniti 52.6 9.3 0.0002 40.3 2.2 30 253-282 100-134 (428)
294 PF03698 UPF0180: Uncharacteri 52.5 15 0.00032 30.6 2.9 23 355-377 57-79 (80)
295 PRK05480 uridine/cytidine kina 52.2 7.9 0.00017 35.4 1.5 20 255-274 9-28 (209)
296 PRK04175 rpl7ae 50S ribosomal 52.2 70 0.0015 28.1 7.3 42 166-209 50-92 (122)
297 PF11009 DUF2847: Protein of u 52.2 18 0.00039 31.4 3.5 64 147-210 4-77 (105)
298 PRK14170 bifunctional 5,10-met 52.0 93 0.002 31.4 9.0 150 94-280 30-185 (284)
299 PRK12475 thiamine/molybdopteri 51.8 50 0.0011 33.5 7.2 67 110-194 81-147 (338)
300 cd01878 HflX HflX subfamily. 51.8 8.8 0.00019 34.5 1.7 31 253-283 42-72 (204)
301 PRK06851 hypothetical protein; 51.7 39 0.00084 35.1 6.5 115 255-377 33-176 (367)
302 cd01393 recA_like RecA is a b 51.7 10 0.00022 34.7 2.1 25 249-273 15-40 (226)
303 PF01121 CoaE: Dephospho-CoA k 51.5 11 0.00023 35.0 2.2 32 255-286 3-34 (180)
304 PRK12402 replication factor C 51.5 8.8 0.00019 37.1 1.7 21 254-274 38-58 (337)
305 PRK00698 tmk thymidylate kinas 51.4 1.1E+02 0.0023 27.4 8.5 73 299-379 128-202 (205)
306 cd00544 CobU Adenosylcobinamid 51.2 12 0.00025 34.3 2.4 28 255-282 2-30 (169)
307 PRK11889 flhF flagellar biosyn 51.2 72 0.0016 34.2 8.4 21 253-273 242-262 (436)
308 PRK09519 recA DNA recombinatio 51.2 21 0.00047 40.6 4.9 69 195-273 11-81 (790)
309 PRK07283 hypothetical protein; 51.0 63 0.0014 27.1 6.6 41 166-208 38-78 (98)
310 PRK07411 hypothetical protein; 51.0 51 0.0011 34.1 7.2 78 98-193 80-158 (390)
311 PRK14171 bifunctional 5,10-met 50.8 1.5E+02 0.0032 30.1 10.2 150 95-279 32-186 (288)
312 PRK05642 DNA replication initi 50.8 11 0.00024 35.8 2.2 30 253-282 46-79 (234)
313 PF06745 KaiC: KaiC; InterPro 50.6 5.7 0.00012 36.7 0.3 104 253-361 20-157 (226)
314 PRK08116 hypothetical protein; 50.6 11 0.00024 36.8 2.3 28 255-282 117-148 (268)
315 PRK03094 hypothetical protein; 50.5 17 0.00037 30.4 3.0 76 258-377 4-79 (80)
316 PRK15424 propionate catabolism 50.4 31 0.00067 37.5 5.8 41 253-294 243-293 (538)
317 PRK07952 DNA replication prote 50.4 48 0.001 32.3 6.6 30 254-283 101-134 (244)
318 PRK07667 uridine kinase; Provi 50.3 11 0.00025 34.4 2.2 20 255-274 20-39 (193)
319 cd04160 Arfrp1 Arfrp1 subfamil 50.3 60 0.0013 27.6 6.5 20 255-274 2-21 (167)
320 PRK13125 trpA tryptophan synth 50.2 28 0.00062 33.3 5.0 110 147-259 87-214 (244)
321 PRK15116 sulfur acceptor prote 50.2 86 0.0019 31.2 8.4 82 98-196 72-154 (268)
322 TIGR00235 udk uridine kinase. 50.0 8.9 0.00019 35.2 1.4 21 255-275 9-29 (207)
323 PRK05342 clpX ATP-dependent pr 49.9 9.2 0.0002 40.0 1.7 35 248-286 104-138 (412)
324 PRK08223 hypothetical protein; 49.8 29 0.00063 34.9 5.1 78 98-193 69-149 (287)
325 PLN02318 phosphoribulokinase/u 49.8 12 0.00026 41.6 2.6 47 222-275 42-88 (656)
326 cd02024 NRK1 Nicotinamide ribo 49.8 9 0.0002 35.8 1.5 21 255-275 2-22 (187)
327 TIGR01520 FruBisAldo_II_A fruc 49.6 53 0.0011 34.3 7.0 46 147-192 9-55 (357)
328 PRK14493 putative bifunctional 49.5 11 0.00024 37.2 2.1 31 255-286 4-38 (274)
329 cd01839 SGNH_arylesterase_like 49.3 58 0.0013 29.3 6.6 25 174-198 155-179 (208)
330 PRK14178 bifunctional 5,10-met 49.3 2.9E+02 0.0064 27.8 13.1 151 94-281 25-181 (279)
331 cd01841 NnaC_like NnaC (CMP-Ne 48.9 49 0.0011 28.7 5.8 51 150-200 74-142 (174)
332 PRK14529 adenylate kinase; Pro 48.9 11 0.00023 36.3 1.8 26 255-280 3-29 (223)
333 cd04156 ARLTS1 ARLTS1 subfamil 48.8 79 0.0017 26.6 7.0 22 255-276 2-23 (160)
334 PRK12377 putative replication 48.8 48 0.001 32.4 6.3 43 233-282 89-135 (248)
335 cd00157 Rho Rho (Ras homology) 48.8 12 0.00027 31.7 2.1 23 255-277 3-25 (171)
336 PRK14186 bifunctional 5,10-met 48.7 95 0.0021 31.5 8.5 148 95-279 32-185 (297)
337 cd04111 Rab39 Rab39 subfamily. 48.7 90 0.0019 28.8 7.8 35 345-380 131-168 (211)
338 TIGR00041 DTMP_kinase thymidyl 48.7 13 0.00027 33.3 2.2 28 255-282 6-37 (195)
339 PF01656 CbiA: CobQ/CobB/MinD/ 48.7 12 0.00026 32.8 2.0 28 257-284 4-35 (195)
340 KOG1707 Predicted Ras related/ 48.6 27 0.00058 38.7 4.9 105 251-363 8-123 (625)
341 TIGR00750 lao LAO/AO transport 48.5 17 0.00036 35.9 3.2 30 254-283 36-69 (300)
342 COG0536 Obg Predicted GTPase [ 48.5 46 0.001 34.9 6.3 123 251-378 158-302 (369)
343 COG3265 GntK Gluconate kinase 48.4 8.5 0.00018 35.9 1.0 21 258-278 1-22 (161)
344 PRK14183 bifunctional 5,10-met 48.0 3.1E+02 0.0066 27.8 11.9 149 95-279 31-184 (281)
345 cd04155 Arl3 Arl3 subfamily. 48.0 12 0.00025 32.3 1.8 24 252-275 14-37 (173)
346 PLN02674 adenylate kinase 47.9 12 0.00026 36.6 2.0 26 254-279 33-59 (244)
347 PRK14723 flhF flagellar biosyn 47.8 56 0.0012 37.3 7.4 85 255-365 188-275 (767)
348 cd01899 Ygr210 Ygr210 subfamil 47.7 11 0.00024 38.0 1.8 31 255-285 1-31 (318)
349 cd01484 E1-2_like Ubiquitin ac 47.7 70 0.0015 31.0 7.2 81 97-194 40-122 (234)
350 PRK08760 replicative DNA helic 47.4 1E+02 0.0022 32.8 9.0 107 248-377 224-335 (476)
351 PRK00698 tmk thymidylate kinas 47.3 11 0.00024 33.7 1.6 20 255-274 6-25 (205)
352 PRK07933 thymidylate kinase; V 47.2 15 0.00032 34.6 2.4 28 255-282 3-34 (213)
353 PF07905 PucR: Purine cataboli 46.9 33 0.00072 29.5 4.4 46 149-194 57-105 (123)
354 PRK09825 idnK D-gluconate kina 46.8 11 0.00024 34.3 1.5 20 255-274 6-25 (176)
355 PF13191 AAA_16: AAA ATPase do 46.7 9.3 0.0002 33.1 1.0 19 255-273 27-45 (185)
356 PF02224 Cytidylate_kin: Cytid 46.4 1.4E+02 0.0031 27.6 8.7 69 300-375 81-157 (157)
357 cd04158 ARD1 ARD1 subfamily. 46.4 69 0.0015 27.9 6.4 21 255-275 2-22 (169)
358 TIGR03575 selen_PSTK_euk L-ser 46.4 13 0.00028 38.1 2.1 29 255-283 2-35 (340)
359 TIGR02533 type_II_gspE general 46.3 37 0.00081 36.2 5.6 74 103-194 292-365 (486)
360 PF07724 AAA_2: AAA domain (Cd 46.2 10 0.00022 34.6 1.2 23 252-274 3-25 (171)
361 cd01849 YlqF_related_GTPase Yl 46.2 13 0.00028 32.4 1.8 35 252-286 100-135 (155)
362 PF10087 DUF2325: Uncharacteri 46.1 40 0.00087 27.7 4.6 42 165-206 52-93 (97)
363 PRK13768 GTPase; Provisional 46.0 13 0.00029 35.7 2.0 30 255-284 5-38 (253)
364 cd04127 Rab27A Rab27a subfamil 45.9 14 0.0003 32.0 2.0 25 254-278 6-30 (180)
365 PRK05537 bifunctional sulfate 45.9 1.1E+02 0.0023 33.6 8.9 21 254-274 394-414 (568)
366 PF10662 PduV-EutP: Ethanolami 45.6 12 0.00025 34.1 1.5 115 255-373 4-141 (143)
367 COG1618 Predicted nucleotide k 45.4 22 0.00047 33.8 3.2 44 255-307 8-55 (179)
368 KOG2336 Molybdopterin biosynth 45.3 55 0.0012 33.9 6.2 90 88-189 113-209 (422)
369 cd01892 Miro2 Miro2 subfamily. 45.1 14 0.0003 32.5 1.9 28 255-282 7-34 (169)
370 PF13173 AAA_14: AAA domain 45.1 13 0.00028 31.5 1.6 21 255-275 5-25 (128)
371 PF04670 Gtr1_RagA: Gtr1/RagA 44.9 8.7 0.00019 37.2 0.6 13 255-267 2-14 (232)
372 TIGR00382 clpX endopeptidase C 44.8 12 0.00025 39.4 1.5 25 250-274 114-138 (413)
373 cd01836 FeeA_FeeB_like SGNH_hy 44.8 24 0.00052 31.1 3.3 25 175-199 137-162 (191)
374 PRK14169 bifunctional 5,10-met 44.5 60 0.0013 32.7 6.4 149 95-280 30-184 (282)
375 PRK01018 50S ribosomal protein 44.5 1.2E+02 0.0026 25.6 7.3 44 166-210 36-79 (99)
376 PF13407 Peripla_BP_4: Peripla 44.4 42 0.00092 30.6 5.0 50 147-197 38-89 (257)
377 PF05707 Zot: Zonular occluden 44.4 15 0.00033 33.6 2.0 31 255-285 3-40 (193)
378 cd04106 Rab23_lke Rab23-like s 44.3 15 0.00033 31.0 1.9 21 255-275 3-23 (162)
379 CHL00176 ftsH cell division pr 44.3 12 0.00026 41.4 1.5 21 255-275 219-239 (638)
380 PRK04213 GTP-binding protein; 44.3 14 0.00031 32.9 1.9 32 253-284 10-41 (201)
381 cd01887 IF2_eIF5B IF2/eIF5B (i 44.2 16 0.00036 30.9 2.1 25 255-279 3-27 (168)
382 cd04125 RabA_like RabA-like su 44.1 40 0.00087 29.8 4.6 23 255-277 3-25 (188)
383 cd01121 Sms Sms (bacterial rad 44.1 33 0.00072 35.4 4.6 122 249-374 78-229 (372)
384 PF08423 Rad51: Rad51; InterP 44.1 10 0.00022 36.8 0.9 17 257-273 43-59 (256)
385 cd04161 Arl2l1_Arl13_like Arl2 43.9 81 0.0018 27.5 6.5 21 255-275 2-22 (167)
386 PRK08099 bifunctional DNA-bind 43.9 15 0.00032 38.3 2.1 24 255-278 222-246 (399)
387 PRK14191 bifunctional 5,10-met 43.8 3.6E+02 0.0078 27.3 12.4 148 95-279 31-184 (285)
388 TIGR03877 thermo_KaiC_1 KaiC d 43.7 11 0.00023 35.7 0.9 33 249-281 17-54 (237)
389 TIGR03880 KaiC_arch_3 KaiC dom 43.6 11 0.00023 34.9 1.0 36 249-284 12-52 (224)
390 PRK00080 ruvB Holliday junctio 43.6 14 0.0003 36.6 1.8 26 254-279 53-79 (328)
391 TIGR00630 uvra excinuclease AB 43.4 18 0.00038 41.9 2.7 103 255-377 25-141 (924)
392 TIGR03453 partition_RepA plasm 43.4 57 0.0012 33.2 6.2 78 196-280 47-137 (387)
393 cd04157 Arl6 Arl6 subfamily. 43.4 17 0.00036 30.7 2.0 29 255-283 2-30 (162)
394 PF05729 NACHT: NACHT domain 43.3 16 0.00034 30.9 1.8 19 255-273 3-21 (166)
395 cd01866 Rab2 Rab2 subfamily. 43.3 56 0.0012 28.2 5.4 22 254-275 6-27 (168)
396 PLN02459 probable adenylate ki 43.2 15 0.00032 36.5 1.9 25 254-278 31-56 (261)
397 PTZ00170 D-ribulose-5-phosphat 43.2 2.4E+02 0.0053 26.9 10.0 130 113-260 54-202 (228)
398 PF00406 ADK: Adenylate kinase 43.1 14 0.0003 32.1 1.5 26 257-282 1-27 (151)
399 COG1474 CDC6 Cdc6-related prot 43.1 18 0.00039 37.3 2.5 19 255-273 45-63 (366)
400 TIGR00376 DNA helicase, putati 43.0 21 0.00045 39.4 3.1 38 232-279 163-204 (637)
401 cd04101 RabL4 RabL4 (Rab-like4 43.0 16 0.00034 31.1 1.8 22 254-275 2-23 (164)
402 PRK04328 hypothetical protein; 43.0 11 0.00024 36.1 0.9 30 248-277 18-48 (249)
403 cd04115 Rab33B_Rab33A Rab33B/R 42.9 17 0.00036 31.6 2.0 24 253-276 3-26 (170)
404 cd04113 Rab4 Rab4 subfamily. 42.9 17 0.00036 30.9 1.9 26 254-279 2-27 (161)
405 PRK14732 coaE dephospho-CoA ki 42.7 19 0.0004 33.6 2.4 31 255-285 2-32 (196)
406 cd01981 Pchlide_reductase_B Pc 42.7 3.9E+02 0.0084 27.6 12.1 172 150-377 70-259 (430)
407 TIGR02012 tigrfam_recA protein 42.6 27 0.00059 35.6 3.7 71 195-275 6-78 (321)
408 PF02562 PhoH: PhoH-like prote 42.6 19 0.00041 34.4 2.4 19 255-273 22-40 (205)
409 PRK06851 hypothetical protein; 42.4 37 0.00081 35.3 4.7 117 255-378 217-360 (367)
410 cd04120 Rab12 Rab12 subfamily. 42.3 43 0.00093 31.1 4.7 24 254-277 2-25 (202)
411 PRK09165 replicative DNA helic 42.3 1.1E+02 0.0023 32.8 8.2 123 248-379 212-339 (497)
412 PF07475 Hpr_kinase_C: HPr Ser 42.1 15 0.00033 34.4 1.7 25 254-278 20-44 (171)
413 PF07931 CPT: Chloramphenicol 42.1 21 0.00046 33.2 2.6 65 298-377 109-173 (174)
414 cd04164 trmE TrmE (MnmE, ThdF, 42.0 17 0.00036 30.1 1.8 30 254-283 3-33 (157)
415 cd01537 PBP1_Repressors_Sugar_ 42.0 1.4E+02 0.0031 26.3 7.8 75 106-197 12-88 (264)
416 TIGR00362 DnaA chromosomal rep 41.9 16 0.00035 37.2 2.0 29 255-283 139-173 (405)
417 cd03285 ABC_MSH2_euk MutS2 hom 41.8 2.1E+02 0.0046 27.0 9.4 23 255-277 33-61 (222)
418 cd04163 Era Era subfamily. Er 41.5 35 0.00075 28.1 3.6 21 255-275 6-26 (168)
419 cd01487 E1_ThiF_like E1_ThiF_l 41.5 86 0.0019 28.6 6.5 79 97-194 40-120 (174)
420 PRK14721 flhF flagellar biosyn 41.4 84 0.0018 33.3 7.2 20 255-274 194-213 (420)
421 PHA00729 NTP-binding motif con 41.4 14 0.00031 35.9 1.4 108 254-375 19-138 (226)
422 PRK06761 hypothetical protein; 41.4 29 0.00062 34.8 3.6 21 254-274 5-25 (282)
423 PRK10536 hypothetical protein; 41.2 16 0.00034 36.5 1.7 21 254-274 76-96 (262)
424 PRK00349 uvrA excinuclease ABC 41.2 22 0.00048 41.1 3.1 103 255-377 29-145 (943)
425 KOG1051 Chaperone HSP104 and r 41.1 29 0.00062 40.2 3.9 177 102-308 44-252 (898)
426 COG1484 DnaC DNA replication p 40.9 18 0.00039 35.2 2.1 35 251-285 104-142 (254)
427 PF03215 Rad17: Rad17 cell cyc 40.9 17 0.00036 39.3 2.0 50 229-282 25-76 (519)
428 COG1126 GlnQ ABC-type polar am 40.8 14 0.0003 36.6 1.2 18 255-272 31-48 (240)
429 PRK06995 flhF flagellar biosyn 40.7 79 0.0017 34.2 6.9 20 254-273 258-277 (484)
430 cd04110 Rab35 Rab35 subfamily. 40.7 18 0.00039 32.7 1.9 25 253-277 7-31 (199)
431 TIGR02538 type_IV_pilB type IV 40.7 51 0.0011 35.8 5.6 80 103-200 366-445 (564)
432 COG0324 MiaA tRNA delta(2)-iso 40.7 21 0.00046 36.3 2.6 28 255-282 6-34 (308)
433 COG1763 MobB Molybdopterin-gua 40.7 21 0.00045 33.0 2.3 30 257-286 7-40 (161)
434 PTZ00454 26S protease regulato 40.6 16 0.00035 38.0 1.7 21 255-275 182-202 (398)
435 PTZ00106 60S ribosomal protein 40.5 1.1E+02 0.0023 26.5 6.5 45 165-210 44-88 (108)
436 PRK14176 bifunctional 5,10-met 40.5 1.5E+02 0.0033 30.0 8.5 148 95-279 38-191 (287)
437 TIGR00665 DnaB replicative DNA 40.4 61 0.0013 33.3 5.9 27 248-274 190-217 (434)
438 CHL00181 cbbX CbbX; Provisiona 40.4 16 0.00034 36.2 1.6 21 254-274 61-81 (287)
439 cd03271 ABC_UvrA_II The excisi 40.4 17 0.00037 35.6 1.8 16 255-270 24-39 (261)
440 PRK06731 flhF flagellar biosyn 40.4 1.2E+02 0.0026 30.0 7.7 21 253-273 76-96 (270)
441 PTZ00035 Rad51 protein; Provis 40.2 19 0.00041 36.6 2.1 25 249-273 114-139 (337)
442 TIGR02068 cya_phycin_syn cyano 40.2 29 0.00063 39.5 3.8 96 169-280 396-509 (864)
443 cd01673 dNK Deoxyribonucleosid 40.1 19 0.0004 32.3 1.9 26 255-280 2-28 (193)
444 COG0476 ThiF Dinucleotide-util 40.1 1.1E+02 0.0023 29.3 7.1 81 96-194 70-151 (254)
445 PRK14180 bifunctional 5,10-met 40.0 2E+02 0.0043 29.1 9.2 149 95-279 31-185 (282)
446 PRK10733 hflB ATP-dependent me 40.0 26 0.00056 38.6 3.3 24 255-278 188-212 (644)
447 PRK12726 flagellar biosynthesi 40.0 21 0.00046 37.8 2.5 21 253-273 207-227 (407)
448 PF05496 RuvB_N: Holliday junc 40.0 22 0.00047 35.0 2.4 33 254-286 52-87 (233)
449 cd04124 RabL2 RabL2 subfamily. 39.9 20 0.00044 30.9 2.0 23 255-277 3-25 (161)
450 COG2074 2-phosphoglycerate kin 39.8 1E+02 0.0022 31.4 7.1 79 300-382 210-290 (299)
451 COG0003 ArsA Predicted ATPase 39.8 58 0.0013 33.2 5.5 66 255-321 5-82 (322)
452 cd03112 CobW_like The function 39.7 23 0.0005 31.5 2.4 27 255-281 3-31 (158)
453 TIGR02239 recomb_RAD51 DNA rep 39.7 21 0.00047 35.8 2.4 25 249-273 92-117 (316)
454 cd06321 PBP1_ABC_sugar_binding 39.5 1.4E+02 0.0031 27.2 7.7 97 133-262 32-131 (271)
455 cd01867 Rab8_Rab10_Rab13_like 39.4 20 0.00043 31.0 1.9 22 255-276 6-27 (167)
456 PRK14189 bifunctional 5,10-met 39.3 2.2E+02 0.0047 28.8 9.4 148 95-280 32-186 (285)
457 cd04135 Tc10 TC10 subfamily. 39.2 22 0.00047 30.6 2.1 24 255-278 3-26 (174)
458 PRK14172 bifunctional 5,10-met 39.2 4.2E+02 0.0091 26.7 11.5 147 96-279 33-185 (278)
459 cd01895 EngA2 EngA2 subfamily. 39.1 21 0.00046 29.8 2.0 29 255-283 5-34 (174)
460 smart00177 ARF ARF-like small 39.1 20 0.00044 31.6 2.0 22 253-274 14-35 (175)
461 PRK13975 thymidylate kinase; P 39.1 17 0.00037 32.5 1.5 23 255-277 5-28 (196)
462 PF02593 dTMP_synthase: Thymid 39.0 56 0.0012 31.8 5.0 158 102-286 2-177 (217)
463 PLN02422 dephospho-CoA kinase 39.0 22 0.00048 34.5 2.3 31 255-285 4-34 (232)
464 PLN03046 D-glycerate 3-kinase; 38.8 61 0.0013 35.0 5.6 108 146-283 122-247 (460)
465 PRK14194 bifunctional 5,10-met 38.7 92 0.002 31.7 6.7 151 95-282 33-189 (301)
466 PRK06921 hypothetical protein; 38.5 20 0.00044 35.0 2.0 48 234-284 102-154 (266)
467 PTZ00258 GTP-binding protein; 38.5 22 0.00047 37.2 2.3 33 254-286 23-55 (390)
468 cd01865 Rab3 Rab3 subfamily. 38.5 21 0.00045 30.8 1.9 26 255-280 4-29 (165)
469 PF01637 Arch_ATPase: Archaeal 38.4 17 0.00037 32.3 1.4 21 255-275 23-43 (234)
470 PRK14181 bifunctional 5,10-met 38.3 2.1E+02 0.0046 28.9 9.1 147 94-276 25-177 (287)
471 PF00063 Myosin_head: Myosin h 38.3 15 0.00033 40.3 1.2 21 251-272 85-105 (689)
472 cd01861 Rab6 Rab6 subfamily. 38.2 22 0.00047 30.0 1.9 30 254-283 2-31 (161)
473 PRK14166 bifunctional 5,10-met 37.9 1.2E+02 0.0027 30.5 7.4 150 95-280 30-185 (282)
474 TIGR02928 orc1/cdc6 family rep 37.9 20 0.00042 35.3 1.8 21 254-274 42-62 (365)
475 TIGR02853 spore_dpaA dipicolin 37.9 26 0.00057 34.6 2.7 95 154-280 84-178 (287)
476 TIGR01287 nifH nitrogenase iro 37.8 22 0.00049 33.9 2.2 28 255-282 3-34 (275)
477 PRK04195 replication factor C 37.7 22 0.00049 37.3 2.3 29 254-282 41-70 (482)
478 TIGR02238 recomb_DMC1 meiotic 37.6 24 0.00052 35.5 2.4 25 249-273 92-117 (313)
479 PRK08903 DnaA regulatory inact 37.6 20 0.00044 33.1 1.8 21 255-275 45-65 (227)
480 PRK07877 hypothetical protein; 37.5 95 0.0021 35.2 7.2 78 99-194 150-227 (722)
481 COG1223 Predicted ATPase (AAA+ 37.5 19 0.00041 36.9 1.6 35 248-286 147-181 (368)
482 CHL00095 clpC Clp protease ATP 37.4 15 0.00033 41.4 1.1 25 251-275 199-223 (821)
483 PRK14185 bifunctional 5,10-met 37.4 3.7E+02 0.0081 27.3 10.7 146 95-277 31-182 (293)
484 cd01486 Apg7 Apg7 is an E1-lik 37.3 1.6E+02 0.0035 30.2 8.2 90 99-198 43-143 (307)
485 PRK00149 dnaA chromosomal repl 37.3 22 0.00047 37.0 2.1 29 255-283 151-185 (450)
486 PRK11545 gntK gluconate kinase 37.3 14 0.0003 33.1 0.6 20 258-277 1-21 (163)
487 KOG3347 Predicted nucleotide k 37.1 31 0.00067 32.6 2.8 106 253-377 8-164 (176)
488 PRK09354 recA recombinase A; P 37.1 23 0.00049 36.6 2.2 76 195-280 11-92 (349)
489 CHL00195 ycf46 Ycf46; Provisio 37.0 22 0.00048 38.1 2.2 21 255-275 262-282 (489)
490 smart00534 MUTSac ATPase domai 36.9 25 0.00054 31.9 2.2 32 255-286 2-43 (185)
491 PRK02261 methylaspartate mutas 36.8 2.7E+02 0.0059 24.7 8.7 107 264-380 19-137 (137)
492 TIGR02639 ClpA ATP-dependent C 36.8 19 0.00041 40.0 1.7 82 198-279 422-512 (731)
493 COG1136 SalX ABC-type antimicr 36.8 16 0.00034 35.6 1.0 39 341-380 149-188 (226)
494 TIGR01243 CDC48 AAA family ATP 36.7 29 0.00063 38.5 3.1 46 233-282 467-518 (733)
495 COG4988 CydD ABC-type transpor 36.7 32 0.00069 37.9 3.3 83 199-286 291-387 (559)
496 PRK07688 thiamine/molybdopteri 36.7 1.2E+02 0.0026 30.9 7.2 41 149-193 106-146 (339)
497 PRK08084 DNA replication initi 36.7 25 0.00053 33.4 2.2 31 254-284 47-81 (235)
498 COG1748 LYS9 Saccharopine dehy 36.6 78 0.0017 33.3 6.0 159 147-327 56-258 (389)
499 cd01900 YchF YchF subfamily. 36.6 21 0.00046 35.4 1.8 32 255-286 1-32 (274)
500 PRK08644 thiamine biosynthesis 36.5 1.3E+02 0.0028 28.4 7.0 78 98-194 70-149 (212)
No 1
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=100.00 E-value=1.5e-105 Score=771.71 Aligned_cols=265 Identities=45% Similarity=0.753 Sum_probs=256.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCH
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADP 174 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~ 174 (393)
++.++||+||||||+|||++++|+|+|||++ ++++++||| |+|.+++.++++++++++++|||||||+
T Consensus 2 ~~~~~i~~VSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~------v~~~~~~~~i~~~~~~~~~iV~~Tlv~~ 69 (269)
T PRK05339 2 MMKRHVFLVSDSTGETAETVGRAALSQFPNV------EFEEHRYPF------VRTEEKADEVLEEINAERPIVFYTLVDP 69 (269)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHhCCCC------CeeEEEeCC------cCCHHHHHHHHHHHHhcCCEEEEeCCCH
Confidence 5678999999999999999999999999974 578999999 9999999999999998899999999999
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016228 175 SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 254 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eAD 254 (393)
+||++|+++|+.+||+++|+|+|+++.|+++||++|.+ .||+.|+||++||+|||||||||+||||++|++|.+||
T Consensus 70 elr~~l~~~~~~~~i~~vdll~p~i~~le~~lg~~p~~----~pG~~~~ld~~Yf~RIeAiefal~hDDG~~~~~l~~AD 145 (269)
T PRK05339 70 ELREILEERCAEFGIPCIDILGPLIAPLEQELGLKPTP----EPGRTHGLDEEYFKRIEAIEFALAHDDGQDPRGLDEAD 145 (269)
T ss_pred HHHHHHHHHHHHcCCCEEeccHHHHHHHHHHHCcCCCC----CCCcccCCcHHHHHHHHHHHHHHHcCCCCCcCCcccCC
Confidence 99999999999999999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS 334 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA 334 (393)
|||||||||||||||||||++|||||||||||+++||++||+++++|||||||||++|++||++|+++||+ |.||
T Consensus 146 IiLvGVSRtsKTPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~Rl~~lg~-----s~Ya 220 (269)
T PRK05339 146 VILVGVSRTSKTPTSLYLANKGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKERLPNLGL-----SRYA 220 (269)
T ss_pred EEEECcCCCCCcHHHHHHHccCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHHHhcccCc-----CcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred CHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhcc
Q 016228 335 EMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 335 s~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r~ 381 (393)
|+++|++||+||++||+++ ||||||||+|||||||+.||++++.+.
T Consensus 221 ~~~~i~~El~~A~~l~~k~-~~pvIdvT~kSIEEtA~~Il~~~~~~~ 266 (269)
T PRK05339 221 SLEQCREELAEAERLFRRE-GIPVIDVTNKSIEETAAKILEILGLRR 266 (269)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCCEEECCCCcHHHHHHHHHHHHHhhc
Confidence 9999999999999999997 999999999999999999999997654
No 2
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=100.00 E-value=1.1e-104 Score=761.17 Aligned_cols=255 Identities=52% Similarity=0.835 Sum_probs=249.4
Q ss_pred EEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHH
Q 016228 100 IYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAES 179 (393)
Q Consensus 100 IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~ 179 (393)
||+||||||+||++++||+|+|||+. ++++++||| |+|.+++.++++++++++++|||||||++||++
T Consensus 1 IyiVSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~------I~~~~~~~~il~~i~~~~~iV~~Tlv~~~lr~~ 68 (255)
T PF03618_consen 1 IYIVSDSTGETAETVARAALAQFPDV------EFEIHRFPF------IRTEEQLDEILEEIKEENAIVFYTLVDPELREY 68 (255)
T ss_pred CEEEecCchHHHHHHHHHHHHhCCCC------ceEEEECCC------cCCHHHHHHHHHHHhccCCEEEEeCCCHHHHHH
Confidence 79999999999999999999999974 589999999 999999999999999989999999999999999
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEc
Q 016228 180 AKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSG 259 (393)
Q Consensus 180 l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvG 259 (393)
++++|+++||+++|+|+|+++.|+++||++|.+ .||+.|+||++||+|||||||||+||||+++++|.+|||||||
T Consensus 69 l~~~~~~~~i~~~Dll~~~l~~l~~~lg~~p~~----~pg~~~~ld~~Yf~RIeAiefav~~DDG~~~~~l~~ADivLvG 144 (255)
T PF03618_consen 69 LEEFCREHGIPCVDLLGPLLSALEEFLGQKPSR----KPGLQHQLDEDYFKRIEAIEFAVKHDDGKNPRGLDEADIVLVG 144 (255)
T ss_pred HHHHHHhcCCCEEeccHHHHHHHHHHHCcCccc----ccCccccchHHHHHHHHHHHHHHHccCCCCccccccCCEEEEc
Confidence 999999999999999999999999999999975 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHH
Q 016228 260 VSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYV 339 (393)
Q Consensus 260 VSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I 339 (393)
|||||||||||||||+|||||||||||+++||++||++|++|||||||||++|++||++|++.||++ .+.|||+++|
T Consensus 145 VSRtsKTPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~ki~GLtidp~~L~~IR~~Rl~~lg~~---~s~Ya~~~~i 221 (255)
T PF03618_consen 145 VSRTSKTPLSMYLANKGYKVANVPLVPEVPLPEELFEVDPKKIFGLTIDPERLIEIRRERLKSLGLD---DSSYADLERI 221 (255)
T ss_pred ccccCCCchhHHHHhcCcceeecCcCCCCCCCHHHHhCCCCcEEEEECCHHHHHHHHHHHHhccCCC---CCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 6899999999
Q ss_pred HHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHH
Q 016228 340 REELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVL 374 (393)
Q Consensus 340 ~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il 374 (393)
++||+||+++|+|+ ||||||||+|||||||+.||
T Consensus 222 ~~El~~A~~l~~~~-~~pvIdvT~ksIEEtA~~Il 255 (255)
T PF03618_consen 222 EEELEYAERLFRKL-GCPVIDVTNKSIEETAAEIL 255 (255)
T ss_pred HHHHHHHHHHHHHc-CCCEEECCCCcHHHHHHHhC
Confidence 99999999999997 99999999999999999996
No 3
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=4.1e-95 Score=695.82 Aligned_cols=270 Identities=43% Similarity=0.636 Sum_probs=257.8
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHH
Q 016228 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPS 175 (393)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~e 175 (393)
..++||+||||||+|||.++||+|+||++.. +...+|.||+ |++.+++.+++..++.++++|.||+++++
T Consensus 2 ~~~~v~~VSDsTGeTae~~~rA~laQF~~~~----~~~~~~~~~~------i~~~~~~~~~~~~~~~~~~iv~~tiv~~~ 71 (273)
T COG1806 2 TKRHVFYVSDSTGETAELIGRAALAQFPGVK----FKAITHPFPD------IRSKAQLVEVLILAAYAPGIVRPTIVDSE 71 (273)
T ss_pred CcceEEEEeCChHHHHHHHHHHHHHhcCCCC----CCceeeeccc------chhHHHHHHHHHHHhhcCCceEEEEehHH
Confidence 4589999999999999999999999999743 3367778888 99999999999988889999999999999
Q ss_pred HHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcE
Q 016228 176 MAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 255 (393)
Q Consensus 176 Lr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADI 255 (393)
++.++.+.|.+.|++|+|+|+|+++.||.++|.+|.. .+|..|.||++||+|||||||||+||||++|++|.+|||
T Consensus 72 v~~~l~~~~~~~~~~~vdvl~p~i~~le~~lg~~~~~----~~g~~h~l~~~Yf~RIeAi~Fal~hDDG~~~~~l~~ADv 147 (273)
T COG1806 72 VRPELREICAEAGAPCVDVLGPLIALLESELGLEPTP----EPGRQHSLDDDYFDRIEAINFALAHDDGQSPRNLDEADV 147 (273)
T ss_pred hHHHHHHHHHHcCCCeehHHHHHHHHHHHHhCCCCcc----cccccccchHHHHHHHHHHHHHHhccCCCCccccCccCE
Confidence 9999999999999999999999999999999999975 899999999999999999999999999999999999999
Q ss_pred EEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC
Q 016228 256 ILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE 335 (393)
Q Consensus 256 VLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs 335 (393)
||||||||||||||+|||++|+|||||||||+++.|++||+..+.+||||||+|+||++||++||+++|+. ++|.|||
T Consensus 148 ILvGVSRtsKTPtS~YLA~q~ikaAN~PlVpe~~~p~~L~~~~~~~i~GLti~peRL~~IR~eRL~~~~~~--~~s~Ya~ 225 (273)
T COG1806 148 ILVGVSRTSKTPTSLYLALQGIKAANYPLVPEDPEPDELPAALKPLLFGLTISPERLSAIREERLKSLGLR--ENSRYAS 225 (273)
T ss_pred EEEeeccCCCCchHHHHHHhcchhccCCcCCCCCChhhhhhcccceEEEEecCHHHHHHHHHHHhhccCCC--Ccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 4899999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhccc
Q 016228 336 MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRKH 382 (393)
Q Consensus 336 ~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r~~ 382 (393)
.++|++||.||++||+++ ||||||||+|||||||+.|+.++...+.
T Consensus 226 ~~~~~eEl~~ae~l~~r~-~~pvidvt~~SIEEtAa~Il~~~~~~r~ 271 (273)
T COG1806 226 LDQCREELAYAEALFRRN-GIPVIDVTNKSIEETAAKILALLGLSRR 271 (273)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCEEecccchHHHHHHHHHHHHhcccc
Confidence 999999999999999997 9999999999999999999999966554
No 4
>PRK13947 shikimate kinase; Provisional
Probab=97.71 E-value=0.0006 Score=59.82 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=72.7
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCccccc-----------------c--CCCcEEE----E
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPKSLFQ-----------------V--DPEKVFG----L 305 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLVp----~v~lP~~L~~-----------------i--~~~KI~G----L 305 (393)
-|+|+|.++||||-++-.|| ..||..-....+- +.+++ ++|+ . ...-+++ -
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~-~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~ 81 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVA-EIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV 81 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHH-HHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence 38999999999999999999 5688776665443 12211 1111 1 1123443 2
Q ss_pred ecChhHHH---------------HHHHHHHhhcCCCCCCCC-CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHH
Q 016228 306 TINPLVLQ---------------SIRKARARSLGFRDEIRS-NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEET 369 (393)
Q Consensus 306 TIdP~rL~---------------~IR~eRl~~lGl~~~~~S-~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEt 369 (393)
.++++.+. +++.+|+..-+-. +.. .-...+++.+-++....+|... --+||+++.++||+
T Consensus 82 vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~r--p~~~~~~~~~~i~~~~~~r~~~y~~a--d~~Idt~~~~~~~i 157 (171)
T PRK13947 82 VLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSR--PLLMVGDPEERIKELLKEREPFYDFA--DYTIDTGDMTIDEV 157 (171)
T ss_pred cCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCC--CCCCCCChHHHHHHHHHHHHHHHHhc--CEEEECCCCCHHHH
Confidence 35555555 3345666432211 111 1122456666666666777652 36899999999999
Q ss_pred HHHHHH-HHh
Q 016228 370 AAVVLR-LYH 378 (393)
Q Consensus 370 Aa~Il~-~~~ 378 (393)
+..|.+ ++.
T Consensus 158 ~~~I~~~~~~ 167 (171)
T PRK13947 158 AEEIIKAYLK 167 (171)
T ss_pred HHHHHHHHHh
Confidence 999999 543
No 5
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.50 E-value=0.00061 Score=68.09 Aligned_cols=89 Identities=27% Similarity=0.344 Sum_probs=65.7
Q ss_pred CCCCCcccccc----CC-CcEEEEecChhHHHHHH-HHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhhCCCCcEE
Q 016228 287 GVELPKSLFQV----DP-EKVFGLTINPLVLQSIR-KARARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPVI 359 (393)
Q Consensus 287 ~v~lP~~L~~i----~~-~KI~GLTIdP~rL~~IR-~eRl~~lGl~~~~~S~Y-As~e~I~~EL~~A~~lf~k~~g~pVI 359 (393)
|+.+++.+.+. .+ .-.|-|+|.-+..++=| ..|.+.+.- +...| ...+.|+.+=+|--+-.+++ |||+|
T Consensus 197 Gvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r---~~~~y~~~~~~ir~iq~~l~~~a~~~-~ip~I 272 (301)
T PRK04220 197 GVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSRR---PAERYLKNFEIIREINDYIVEKAKKH-GVPVI 272 (301)
T ss_pred cCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhCC---chhhHHHHHHHHHHHHHHHHHHHHHh-CCCee
Confidence 67777777542 12 23678888777777666 567666622 35567 89999999999999999997 99999
Q ss_pred eCCCccHHHHHHHHHHHHhhcc
Q 016228 360 EVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 360 DVT~kSIEEtAa~Il~~~~~r~ 381 (393)
|.++ |++|-+.|++.+.++.
T Consensus 273 ~n~~--i~~s~~~~~~~i~~~~ 292 (301)
T PRK04220 273 ENIS--IEETVDKILEIITERL 292 (301)
T ss_pred cCcc--HHHHHHHHHHHHHHHH
Confidence 7664 7888888888776654
No 6
>PRK03839 putative kinase; Provisional
Probab=97.28 E-value=0.0018 Score=57.77 Aligned_cols=117 Identities=21% Similarity=0.347 Sum_probs=70.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccc-cCCCCCC-------------------------ccccc------cCCCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPI-VMGVELP-------------------------KSLFQ------VDPEK 301 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPL-Vp~v~lP-------------------------~~L~~------i~~~K 301 (393)
|+|+|.+++|||-++-.||+ .||...+.== +....++ ..+.+ ..++.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vIidG~~~~l~~~~~ 82 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEFKEKNVVLDGHLSHLLPVDY 82 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHhccCCCEEEEeccccccCCCE
Confidence 89999999999999999995 5887765220 1000000 00111 23456
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH--HHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 302 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA--GRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 302 I~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A--~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
+|-|+.+++.+.+ |++.-+... . ...+.+.+++... .+.|.+...+-+||++++++||++..|++.+..
T Consensus 83 vi~L~~~~~~~~~----Rl~~R~~~~---~--~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~ 153 (180)
T PRK03839 83 VIVLRAHPKIIKE----RLKERGYSK---K--KILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKS 153 (180)
T ss_pred EEEEECCHHHHHH----HHHHcCCCH---H--HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 7889999988754 443222110 0 0123344444321 133333225778999999999999999999975
Q ss_pred c
Q 016228 380 R 380 (393)
Q Consensus 380 r 380 (393)
.
T Consensus 154 ~ 154 (180)
T PRK03839 154 G 154 (180)
T ss_pred C
Confidence 4
No 7
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0027 Score=59.46 Aligned_cols=112 Identities=26% Similarity=0.383 Sum_probs=79.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec-------cccCCCC----------------CCc--------------ccccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANV-------PIVMGVE----------------LPK--------------SLFQV 297 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANv-------PLVp~v~----------------lP~--------------~L~~i 297 (393)
|++-|-.+||||-.|=-|+-.||++..+ +++-+.+ +.+ .|+.
T Consensus 3 I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl~~- 81 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHLLP- 81 (180)
T ss_pred EEEeCCCCCchHHHHHHHHHhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhhcCC-
Confidence 7889999999999999999999999864 3333221 111 2322
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH-----HHHHHHhhhCCCCcEEeCCCccHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREEL-----EFAGRIFAQNPVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL-----~~A~~lf~k~~g~pVIDVT~kSIEEtAa~ 372 (393)
+..-+|=|..+|+.|- +||+.-|-+.. -=.|+++.|+ ..|.+-|.+ .-.||+|++|.||++..
T Consensus 82 ~~dlVvVLR~~p~~L~----~RLk~RGy~~e-----KI~ENveAEi~~vi~~EA~E~~~~---v~evdtt~~s~ee~~~~ 149 (180)
T COG1936 82 DCDLVVVLRADPEVLY----ERLKGRGYSEE-----KILENVEAEILDVILIEAVERFEA---VIEVDTTNRSPEEVAEE 149 (180)
T ss_pred CCCEEEEEcCCHHHHH----HHHHHcCCCHH-----HHHHHHHHHHHHHHHHHHHHhcCc---eEEEECCCCCHHHHHHH
Confidence 4678999999999995 58865553210 1134455553 456666644 46899999999999999
Q ss_pred HHHHHhh
Q 016228 373 VLRLYHD 379 (393)
Q Consensus 373 Il~~~~~ 379 (393)
|++++..
T Consensus 150 i~~ii~~ 156 (180)
T COG1936 150 IIDIIGG 156 (180)
T ss_pred HHHHHcc
Confidence 9999984
No 8
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.00 E-value=0.0062 Score=53.70 Aligned_cols=119 Identities=19% Similarity=0.225 Sum_probs=70.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccc--------------------------------------cC----CCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVPI--------------------------------------VM----GVELP 291 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvPL--------------------------------------Vp----~v~lP 291 (393)
|+|+|.++||||-++-.|| ..|+..-+.=. |- ++.+.
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~vi~~ggg~vl~ 84 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPSTVIATGGGIILT 84 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeEEECCCCccCC
Confidence 8899999999999999999 46875544111 00 11111
Q ss_pred ccccc--cCCCcEEEEecChhHHHH-HHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHH
Q 016228 292 KSLFQ--VDPEKVFGLTINPLVLQS-IRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEE 368 (393)
Q Consensus 292 ~~L~~--i~~~KI~GLTIdP~rL~~-IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEE 368 (393)
....+ .....+|-|+.+++.+.+ |+ .|-...+-+.-.+..+ .+.+++-++.-...|++. .+-+||.+ +++||
T Consensus 85 ~~~~~~l~~~~~~v~l~~~~~~~~~Rl~-~r~~~~~rp~~~~~~~--~~~~~~~~~~r~~~y~~~-a~~~Id~~-~~~e~ 159 (171)
T PRK03731 85 EENRHFMRNNGIVIYLCAPVSVLANRLE-ANPEEDQRPTLTGKPI--SEEVAEVLAEREALYREV-AHHIIDAT-QPPSQ 159 (171)
T ss_pred HHHHHHHHhCCEEEEEECCHHHHHHHHc-cccccccCCcCCCCCh--HHHHHHHHHHHHHHHHHh-CCEEEcCC-CCHHH
Confidence 11000 134568888999887643 22 1211000000001111 244555555555688885 67899966 89999
Q ss_pred HHHHHHHHHh
Q 016228 369 TAAVVLRLYH 378 (393)
Q Consensus 369 tAa~Il~~~~ 378 (393)
++..|++.+.
T Consensus 160 v~~~i~~~l~ 169 (171)
T PRK03731 160 VVSEILSALA 169 (171)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 9
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.86 E-value=0.012 Score=53.06 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=67.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc-----------------------------------------ccCCCCC--
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVP-----------------------------------------IVMGVEL-- 290 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvP-----------------------------------------LVp~v~l-- 290 (393)
|+|+|.+++|||-++-.|| ..|+..-+.= +.-+...
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~ggg~v~ 86 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGGGSVK 86 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCchhC
Confidence 8999999999999999999 4566543221 0001011
Q ss_pred -Cc--cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC--HHHHHHHHHHH-HHHhhhCCCCcEEeCCCc
Q 016228 291 -PK--SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE--MDYVREELEFA-GRIFAQNPVWPVIEVTGK 364 (393)
Q Consensus 291 -P~--~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs--~e~I~~EL~~A-~~lf~k~~g~pVIDVT~k 364 (393)
|+ .++. ..+.+|-|+.+++.+.+ |++..+. .....+ .+...++|-.. +.+|++. -.-+||++++
T Consensus 87 ~~~~~~~l~-~~~~vv~L~~~~e~~~~----Ri~~~~~----rP~~~~~~~~~~~~~l~~~R~~~Y~~~-Ad~~idt~~~ 156 (172)
T PRK05057 87 SRETRNRLS-ARGVVVYLETTIEKQLA----RTQRDKK----RPLLQVDDPREVLEALANERNPLYEEI-ADVTIRTDDQ 156 (172)
T ss_pred CHHHHHHHH-hCCEEEEEeCCHHHHHH----HHhCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHhh-CCEEEECCCC
Confidence 11 1111 23456667777765543 4432211 111221 12223344333 4567774 5678999999
Q ss_pred cHHHHHHHHHHHHhh
Q 016228 365 AIEETAAVVLRLYHD 379 (393)
Q Consensus 365 SIEEtAa~Il~~~~~ 379 (393)
++||++..|++.+..
T Consensus 157 s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 157 SAKVVANQIIHMLES 171 (172)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998864
No 10
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.78 E-value=0.0098 Score=58.89 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=64.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee-eccccCCCCCCcc--cccc---CCC----------------------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVA-NVPIVMGVELPKS--LFQV---DPE---------------------------- 300 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVA-NvPLVp~v~lP~~--L~~i---~~~---------------------------- 300 (393)
|+|.|.|+||||-++--|++.||.+. |+|+-. +|+- +.+- +++
T Consensus 9 i~i~G~~GsGKtt~~~~l~~~g~~~~d~~~~~L---~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~ 85 (288)
T PRK05416 9 VIVTGLSGAGKSVALRALEDLGYYCVDNLPPSL---LPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERGI 85 (288)
T ss_pred EEEECCCCCcHHHHHHHHHHcCCeEECCcCHHH---HHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcCC
Confidence 88999999999999999998896554 443221 0000 0000 111
Q ss_pred --cEEEEecChhHHHHHHHHHHhhcCCCCCCCC-CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 301 --KVFGLTINPLVLQSIRKARARSLGFRDEIRS-NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 301 --KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S-~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
.+|-|+.+++.|.+ |++.-.-.. +-. .-...+.+.+|-+.-+.+++. .--+||+++++++|++..|++.+
T Consensus 86 ~~~iI~L~a~~e~L~~----Rl~~~rr~R-PLl~~~~l~e~I~~eR~~l~pl~~~--ADivIDTs~ls~~el~e~I~~~l 158 (288)
T PRK05416 86 DVRVLFLDASDEVLIR----RYSETRRRH-PLSGDGSLLEGIELERELLAPLRER--ADLVIDTSELSVHQLRERIRERF 158 (288)
T ss_pred cEEEEEEECCHHHHHH----HHhhcccCC-CccCCccHHHHHHHHHhhhhhHHHh--CCEEEECCCCCHHHHHHHHHHHH
Confidence 34555555555543 221100000 101 112233355554433334433 34799999999999999999988
Q ss_pred hh
Q 016228 378 HD 379 (393)
Q Consensus 378 ~~ 379 (393)
..
T Consensus 159 ~~ 160 (288)
T PRK05416 159 GG 160 (288)
T ss_pred hc
Confidence 55
No 11
>PRK04040 adenylate kinase; Provisional
Probab=96.72 E-value=0.011 Score=54.54 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=76.8
Q ss_pred EEEEccCCCCCChhhHHhhhc---Cceeeecccc----------------------------------------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQK---GYKVANVPIV---------------------------------------------- 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~---G~KVANvPLV---------------------------------------------- 285 (393)
|+|.|+++||||=++--|+++ |+++.|+==+
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~~~~ 84 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEGPVI 84 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCCCEE
Confidence 789999999999999999854 7877654221
Q ss_pred CC------------CCCCcccc-ccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---
Q 016228 286 MG------------VELPKSLF-QVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI--- 349 (393)
Q Consensus 286 p~------------v~lP~~L~-~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~l--- 349 (393)
-+ ..+|.++| +..+..+|-|..+|+.+.+ .|++. .. .+..|.+.+.+++.++.++..
T Consensus 85 ~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~---Rrl~d-~~---R~R~~es~e~I~~~~~~a~~~a~~ 157 (188)
T PRK04040 85 VDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILM---RRLRD-ET---RRRDVETEEDIEEHQEMNRAAAMA 157 (188)
T ss_pred EeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHH---HHhcc-cc---cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 01243333 2345678999999994443 44422 00 135678888888888777774
Q ss_pred hhhCCCCcEEeCCCcc--HHHHHHHHHHHH
Q 016228 350 FAQNPVWPVIEVTGKA--IEETAAVVLRLY 377 (393)
Q Consensus 350 f~k~~g~pVIDVT~kS--IEEtAa~Il~~~ 377 (393)
|..+.|||+.=+.|.- .|+++..|++++
T Consensus 158 ~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 158 YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 3333467755444444 999999999876
No 12
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.70 E-value=0.023 Score=52.72 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=74.4
Q ss_pred CCCCCCcCc----EEEEccCCCCCChhhHHhhhcCcee------------------eeccccCC---------CC-----
Q 016228 246 LPQNLQKAD----IILSGVSRTGKTPLSIYLAQKGYKV------------------ANVPIVMG---------VE----- 289 (393)
Q Consensus 246 ~p~~L~eAD----IVLvGVSRTsKTPlSmYLA~~G~KV------------------ANvPLVp~---------v~----- 289 (393)
+|+.+.+++ |||+|+|++|||-+.-.|+++|+++ -+|.+|.. ..
T Consensus 3 ~~~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~ 82 (206)
T PRK14738 3 NPWLFNKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWA 82 (206)
T ss_pred CccccCCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEE
Confidence 455555554 7899999999999999999887654 23443320 00
Q ss_pred --------CCc-ccc-ccCCCcEEEEecChhHHHHHHHHHHhhc---CCCCC---------CCCCCCCHHHHHHHHHHHH
Q 016228 290 --------LPK-SLF-QVDPEKVFGLTINPLVLQSIRKARARSL---GFRDE---------IRSNYSEMDYVREELEFAG 347 (393)
Q Consensus 290 --------lP~-~L~-~i~~~KI~GLTIdP~rL~~IR~eRl~~l---Gl~~~---------~~S~YAs~e~I~~EL~~A~ 347 (393)
.|. .+- ....++++=|+++++-+..+|+.--... -.+.+ .... -+.+.+.+-+..+.
T Consensus 83 ~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~-~~~~~~~~Rl~~~~ 161 (206)
T PRK14738 83 EVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRT-ESPEELERRLATAP 161 (206)
T ss_pred EEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 000 000 1123566677777777666654221000 00000 0000 12344555555544
Q ss_pred HHhhh-C-CCCcEEeCCCccHHHHHHHHHHHHhhcccc
Q 016228 348 RIFAQ-N-PVWPVIEVTGKAIEETAAVVLRLYHDRKHK 383 (393)
Q Consensus 348 ~lf~k-~-~g~pVIDVT~kSIEEtAa~Il~~~~~r~~~ 383 (393)
.-+.. . ..+-+||.+ .++||+.+.|++++...+.+
T Consensus 162 ~e~~~~~~~~~~iId~~-~~~e~v~~~i~~~l~~~~~~ 198 (206)
T PRK14738 162 LELEQLPEFDYVVVNPE-DRLDEAVAQIMAIISAEKSR 198 (206)
T ss_pred HHHhcccCCCEEEECCC-CCHHHHHHHHHHHHHHHhcc
Confidence 32322 1 135566665 58999999999999876443
No 13
>PRK04182 cytidylate kinase; Provisional
Probab=96.60 E-value=0.016 Score=50.63 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|+|.|.++||||-++-.|| ..||.+-+
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999 57987665
No 14
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.50 E-value=0.021 Score=60.89 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=56.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---------HHhhhCCCCcEEeCCCccHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---------RIFAQNPVWPVIEVTGKAIEE 368 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~---------~lf~k~~g~pVIDVT~kSIEE 368 (393)
+-..-|=|+.+++.+.+-|..+++.-|+. . .+.+.+++++..=. -+|+.. ..-+||+|++++||
T Consensus 420 ~AdlKIfL~As~evRa~RR~~~l~~Rpll---~---~~~e~i~~~i~eRd~~D~~R~i~PLy~a~-dai~IDTs~lsiee 492 (512)
T PRK13477 420 DAELKIFLTASVEERARRRALDLQAQGFP---V---IDLEQLEAQIAERDRLDSTREIAPLRKAD-DAIELITDGLSIEE 492 (512)
T ss_pred CCCEEEEEECCHHHHHHHHHhhhhhCCCc---c---CCHHHHHHHHHHHHhhhcccccccccccC-CeEEEECCCCCHHH
Confidence 33555779999999988777777655552 1 34688888876554 455553 56799999999999
Q ss_pred HHHHHHHHHhh
Q 016228 369 TAAVVLRLYHD 379 (393)
Q Consensus 369 tAa~Il~~~~~ 379 (393)
++..|++.+..
T Consensus 493 Vv~~Il~~i~~ 503 (512)
T PRK13477 493 VVDKIIDLYRD 503 (512)
T ss_pred HHHHHHHHHHH
Confidence 99999999965
No 15
>PRK13808 adenylate kinase; Provisional
Probab=96.47 E-value=0.022 Score=57.87 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=75.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec-------------------------cccCC---------------------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------------PIVMG--------------------- 287 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv-------------------------PLVp~--------------------- 287 (393)
|||+|.+++|||-+|-.|| .+|+...+. .+||+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~I 82 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFI 82 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEE
Confidence 8999999999999999999 678877774 13331
Q ss_pred -CCCCcc---------c---cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHHH-------H
Q 016228 288 -VELPKS---------L---FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREELE-------F 345 (393)
Q Consensus 288 -v~lP~~---------L---~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA--s~e~I~~EL~-------~ 345 (393)
-..|.. + +.+.++.+|-|+++++.|.+--..|+..|.... ...+. +.+.++.=|. .
T Consensus 83 LDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg--~~~R~DD~~E~i~kRL~~Y~~~t~P 160 (333)
T PRK13808 83 LDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG--EEVRADDTPEVLAKRLASYRAQTEP 160 (333)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC--CccCCCCCHHHHHHHHHHHHHHhHH
Confidence 012222 0 113577899999999988774445543322110 01111 2333332222 1
Q ss_pred HHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 346 AGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 346 A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
..+.|...-.|.+||- ..+|||+...|.+.|...
T Consensus 161 Ll~~Y~e~~~lv~IDa-~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 161 LVHYYSEKRKLLTVDG-MMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHhhccCcEEEEEC-CCCHHHHHHHHHHHHHHH
Confidence 2344655323677884 589999999999999654
No 16
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.35 E-value=0.026 Score=49.02 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVAN 281 (393)
|+|.|.++||||-++-.||+ .|+.+-|
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 78999999999999999994 6887666
No 17
>PRK13949 shikimate kinase; Provisional
Probab=96.29 E-value=0.03 Score=50.59 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=71.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc-----------------------------------------CCCCCC-
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV-----------------------------------------MGVELP- 291 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvPLV-----------------------------------------p~v~lP- 291 (393)
|+|+|..++|||=++-.|| ..|+.+-..-.+ .+...|
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~~~ 83 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGAPC 83 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 8999999999999999999 557654433321 111111
Q ss_pred ----ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCC-CCCCC-CC-HHHHHHHHHHHHHHhhhCCCCcEEeCCCc
Q 016228 292 ----KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDE-IRSNY-SE-MDYVREELEFAGRIFAQNPVWPVIEVTGK 364 (393)
Q Consensus 292 ----~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~-~~S~Y-As-~e~I~~EL~~A~~lf~k~~g~pVIDVT~k 364 (393)
.+++. ..+.+|=|+.+++.+.+ |++..+-..+ -...+ .+ .+.+++-.+.-..+|++. .-+||++++
T Consensus 84 ~~~~~~~l~-~~~~vi~L~~~~~~~~~----Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~a--d~~id~~~~ 156 (169)
T PRK13949 84 FFDNMELMN-ASGTTVYLKVSPEVLFV----RLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQA--KIIFNADKL 156 (169)
T ss_pred CHHHHHHHH-hCCeEEEEECCHHHHHH----HHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--CEEEECCCC
Confidence 11221 23567888888887643 4432221000 00111 11 235666667777788873 578999999
Q ss_pred cHHHHHHHHHHH
Q 016228 365 AIEETAAVVLRL 376 (393)
Q Consensus 365 SIEEtAa~Il~~ 376 (393)
+.||++..|++.
T Consensus 157 ~~~e~~~~I~~~ 168 (169)
T PRK13949 157 EDESQIEQLVQR 168 (169)
T ss_pred CHHHHHHHHHHh
Confidence 999999999975
No 18
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.14 E-value=0.057 Score=46.72 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=24.2
Q ss_pred HHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 348 RIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 348 ~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
..|.+. ---+||+++.++||+|+.|++.+.
T Consensus 141 ~~~~~~-~dl~idt~~~~~~e~~~~I~~~v~ 170 (175)
T PRK00131 141 PLYEEV-ADITVETDGRSPEEVVNEILEKLE 170 (175)
T ss_pred HHHHhh-cCeEEeCCCCCHHHHHHHHHHHHH
Confidence 445553 235899999999999999999885
No 19
>PRK14532 adenylate kinase; Provisional
Probab=95.86 E-value=0.05 Score=48.77 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|+|.++||||-+|--|| .+|+.....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 8999999999999999999 668877654
No 20
>PRK13946 shikimate kinase; Provisional
Probab=95.78 E-value=0.084 Score=47.87 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVA 280 (393)
|+|+|+++||||-++-+||+ .|+...
T Consensus 13 I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 13 VVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 99999999999999999995 588644
No 21
>PRK02496 adk adenylate kinase; Provisional
Probab=95.72 E-value=0.094 Score=46.97 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=67.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc-cc-------------------CCCC------------------------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVP-IV-------------------MGVE------------------------ 289 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvP-LV-------------------p~v~------------------------ 289 (393)
|+++|.+++|||-++-+|| ..|+...+.- ++ .+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~v 83 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGWI 83 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCEE
Confidence 8999999999999999999 4687655431 00 0111
Q ss_pred ---CCcc------c------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH-------HH
Q 016228 290 ---LPKS------L------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF-------AG 347 (393)
Q Consensus 290 ---lP~~------L------~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~-------A~ 347 (393)
.|.. | +...+..+|-|.++++.+. +|+..-|-. .-+.+.+++=++. ..
T Consensus 84 ldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~----~Rl~~R~~~------dd~~~~~~~r~~~y~~~~~~v~ 153 (184)
T PRK02496 84 LDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVV----ERLLARGRK------DDTEEVIRRRLEVYREQTAPLI 153 (184)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHH----HHHhcCCCC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 2221 1 1124567788888887764 344332321 1133434333333 33
Q ss_pred HHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 348 RIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 348 ~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
+.|+....+..||-+ .++||++..|.+.+
T Consensus 154 ~~~~~~~~~~~Ida~-~~~~~V~~~i~~~l 182 (184)
T PRK02496 154 DYYRDRQKLLTIDGN-QSVEAVTTELKAAL 182 (184)
T ss_pred HHHHhcCCEEEEECC-CCHHHHHHHHHHHh
Confidence 377664246788954 59999999999876
No 22
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.66 E-value=0.034 Score=49.68 Aligned_cols=22 Identities=18% Similarity=-0.012 Sum_probs=20.2
Q ss_pred CcEEeCCCccHHHHHHHHHHHH
Q 016228 356 WPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 356 ~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
+-+||++..++||+|+.|++.+
T Consensus 153 dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 153 DLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred eEEEECCCCCHHHHHHHHHHhc
Confidence 6799999999999999999875
No 23
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.57 E-value=0.17 Score=44.86 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=69.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc-cc-------------------CCCCCCccc-------------------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVP-IV-------------------MGVELPKSL------------------- 294 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvP-LV-------------------p~v~lP~~L------------------- 294 (393)
|+|+|.++||||-+|-.|| ..|+..-+.- ++ .+...|.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~vl 81 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFLI 81 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEEE
Confidence 7899999999999999999 5687766651 11 011122111
Q ss_pred ----------------cc--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHH
Q 016228 295 ----------------FQ--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRI 349 (393)
Q Consensus 295 ----------------~~--i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-------~~l 349 (393)
+. ..+..+|-|+++++.+.+ |+..-+... +-...+.+.++.-++.- .+.
T Consensus 82 Dg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~----Rl~~R~~~~--~r~dd~~e~~~~r~~~y~~~~~~i~~~ 155 (183)
T TIGR01359 82 DGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIK----RLLKRGQSS--GRVDDNIESIKKRFRTYNEQTLPVIEH 155 (183)
T ss_pred eCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHH----HHhcCCccC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 234568888898876544 332222110 11123455655544422 233
Q ss_pred hhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 350 FAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 350 f~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
|++...+-+||.+ .++||+...|++.|
T Consensus 156 ~~~~~~~~~Id~~-~~~~~v~~~i~~~l 182 (183)
T TIGR01359 156 YENKGKVKEINAE-GSVEEVFEDVEKIF 182 (183)
T ss_pred HHhCCCEEEEECC-CCHHHHHHHHHHHh
Confidence 5553247789977 89999999999876
No 24
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.20 E-value=0.099 Score=48.90 Aligned_cols=72 Identities=14% Similarity=0.042 Sum_probs=46.4
Q ss_pred EEEEec-ChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 302 VFGLTI-NPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 302 I~GLTI-dP~rL~~IR~eRl~~lGl~~~~~S~YA-s~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
.|=|.+ +++.+.+-+..|-...+... +...|. ..+.|+.==+|--+--+++ |+|||| +-.++||-..+++.+
T Consensus 122 ~i~l~v~d~e~lr~Rl~~R~~~~~~~~-p~~~~~~~~~~ir~i~~~l~~~a~~~-~i~~i~--~~~~~~~~~~~~~~~ 195 (197)
T PRK12339 122 AFYLYIRDAELHRSRLADRINYTHKNS-PGKRLAEHLPEYRTIMDYSIADARGY-NIKVID--TDNYREARNPLLDPI 195 (197)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcccCCC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeec--CccHHHHHHHHHHHh
Confidence 344555 46666566666765555433 355676 4555555445555566786 999996 456899999998865
No 25
>PLN02200 adenylate kinase family protein
Probab=95.19 E-value=0.23 Score=47.42 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=70.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec-cccC-------------------CCCCCcc--------------------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV-PIVM-------------------GVELPKS-------------------- 293 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv-PLVp-------------------~v~lP~~-------------------- 293 (393)
|+|+|.++||||=+|-.|| ..|+..-+. -|+- +...|.+
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~~~~~IL 125 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNKFLI 125 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCeEEe
Confidence 6889999999999999999 568765444 1210 1112221
Q ss_pred ---------------ccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHHHHhh
Q 016228 294 ---------------LFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-------LEFAGRIFA 351 (393)
Q Consensus 294 ---------------L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~E-------L~~A~~lf~ 351 (393)
++...+..+|-|+++++.+.+ |+..-+... ...+.+.++.= .....+.|+
T Consensus 126 DG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~----Rl~~R~~~r----~dd~~e~~~~Rl~~y~~~~~pv~~~y~ 197 (234)
T PLN02200 126 DGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVK----RVLNRNQGR----VDDNIDTIKKRLKVFNALNLPVIDYYS 197 (234)
T ss_pred cCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHH----HHHcCcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345678999999987655 332222110 01123333222 333345566
Q ss_pred hCCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 352 QNPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 352 k~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
+.-.|-+||.+. ++||+...|.+.+...
T Consensus 198 ~~~~~~~IDa~~-~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 198 KKGKLYTINAVG-TVDEIFEQVRPIFAAC 225 (234)
T ss_pred hcCCEEEEECCC-CHHHHHHHHHHHHHHc
Confidence 532478999765 9999999999988653
No 26
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.19 E-value=0.33 Score=42.77 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=68.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec--------c-----------------ccC------------------C---
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV--------P-----------------IVM------------------G--- 287 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv--------P-----------------LVp------------------~--- 287 (393)
|+++|+++||||-++--|| ..|+...+. + ++| +
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGF 85 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeE
Confidence 6789999999999999888 557765543 0 111 0
Q ss_pred --CCCCccc-----c---ccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHHh
Q 016228 288 --VELPKSL-----F---QVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRIF 350 (393)
Q Consensus 288 --v~lP~~L-----~---~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-------~~lf 350 (393)
-..|..+ | -..+..+|-|+++++.+.+-...|- .. .+....+.+.+.+-+... .+.|
T Consensus 86 i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~----~~--~~r~d~~~~~~~~r~~~~~~~~~~~~~~y 159 (188)
T TIGR01360 86 LIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRA----ET--SGRVDDNEKTIKKRLETYYKATEPVIAYY 159 (188)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccc----cc--CCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 0123221 0 0234568889999887665322332 11 011223444454444422 2345
Q ss_pred hhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 351 AQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 351 ~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
+....+-+||. +.++||+...|++.+.
T Consensus 160 ~~~~~~~~id~-~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 160 ETKGKLRKINA-EGTVDDVFLQVCTAID 186 (188)
T ss_pred HhCCCEEEEEC-CCCHHHHHHHHHHHHh
Confidence 54313557775 5999999999998874
No 27
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.09 E-value=0.15 Score=50.39 Aligned_cols=124 Identities=23% Similarity=0.311 Sum_probs=67.7
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCc-------------------cccccCCCcEEEEecC-
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPK-------------------SLFQVDPEKVFGLTIN- 308 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLVp----~v~lP~-------------------~L~~i~~~KI~GLTId- 308 (393)
-|+|+|.++||||-++-.|| ..|+.+...=..- +..+++ .+..-...-|++.-..
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~Ggg~ 214 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATGGGI 214 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECCCch
Confidence 49999999999999999999 5677433211000 111111 0001112234443222
Q ss_pred ---hh---HH------------HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHH
Q 016228 309 ---PL---VL------------QSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETA 370 (393)
Q Consensus 309 ---P~---rL------------~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtA 370 (393)
+. .| .+.|.+|+..-+-..+-.+.-+..+.+++-.+.-..+|++. --+||++.+++||++
T Consensus 215 v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~a--d~~I~t~~~s~ee~~ 292 (309)
T PRK08154 215 VSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARA--DAVVDTSGLTVAQSL 292 (309)
T ss_pred hCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC--CEEEECCCCCHHHHH
Confidence 11 11 13455676432210000111233456655555555666552 358999999999999
Q ss_pred HHHHHHHhh
Q 016228 371 AVVLRLYHD 379 (393)
Q Consensus 371 a~Il~~~~~ 379 (393)
..|++++..
T Consensus 293 ~~I~~~l~~ 301 (309)
T PRK08154 293 ARLRELVRP 301 (309)
T ss_pred HHHHHHHHH
Confidence 999998843
No 28
>PRK13948 shikimate kinase; Provisional
Probab=94.95 E-value=0.28 Score=45.47 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=70.5
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCC------------------------------------
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELP------------------------------------ 291 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp----~v~lP------------------------------------ 291 (393)
+=|+|+|.++||||=+.-.||+ .|+...-.=.+- +..+|
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~GgG~ 90 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGGGT 90 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCCcE
Confidence 5599999999999999999994 565432111000 11111
Q ss_pred -------ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC---CHHHHHHHHHHHHHHhhhCCCCcEEeC
Q 016228 292 -------KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS---EMDYVREELEFAGRIFAQNPVWPVIEV 361 (393)
Q Consensus 292 -------~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA---s~e~I~~EL~~A~~lf~k~~g~pVIDV 361 (393)
+.| . +.+.+|-|+.+++.|.+ |++.=+ ..... ..+++.+=++.-+.+|++ ..-+||+
T Consensus 91 v~~~~n~~~l-~-~~g~vV~L~~~~e~l~~----Rl~~~~-----RPll~~~~~~~~l~~l~~~R~~~Y~~--a~~~i~t 157 (182)
T PRK13948 91 FMHEENRRKL-L-SRGPVVVLWASPETIYE----RTRPGD-----RPLLQVEDPLGRIRTLLNEREPVYRQ--ATIHVST 157 (182)
T ss_pred EcCHHHHHHH-H-cCCeEEEEECCHHHHHH----HhcCCC-----CCCCCCCChHHHHHHHHHHHHHHHHh--CCEEEEC
Confidence 011 1 22457778888887765 442111 11111 234555444445566755 4679999
Q ss_pred CCccHHHHHHHHHHHHhh
Q 016228 362 TGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 362 T~kSIEEtAa~Il~~~~~ 379 (393)
.+++++|++..|++.+..
T Consensus 158 ~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 158 DGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999999865
No 29
>PLN02199 shikimate kinase
Probab=94.73 E-value=0.54 Score=47.53 Aligned_cols=148 Identities=15% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCceeeecccc-C--------
Q 016228 217 APGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV-M-------- 286 (393)
Q Consensus 217 ~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~-~G~KVANvPLV-p-------- 286 (393)
..|..+..|++- +.++-+.++-+++. .-|+|+|..+||||=+.-+||+ .||.+...--+ .
T Consensus 77 e~~~~~~~de~~---Lk~~a~~i~~~l~~-------~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI 146 (303)
T PLN02199 77 ETGSVYPFDEDI---LKRKAEEVKPYLNG-------RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSV 146 (303)
T ss_pred ccCCCCCCCHHH---HHHHHHHHHHHcCC-------CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCH
Confidence 355556677762 66677777765542 3599999999999999999995 78876543311 0
Q ss_pred -----------------------------------CCCCCccccc-cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCC-
Q 016228 287 -----------------------------------GVELPKSLFQ-VDPEKVFGLTINPLVLQSIRKARARSLGFRDEI- 329 (393)
Q Consensus 287 -----------------------------------~v~lP~~L~~-i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~- 329 (393)
++.++++-++ ...+.+|=|+.+++.|.+ |++.-|...-|
T Consensus 147 ~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~----RL~~~~~~~RPL 222 (303)
T PLN02199 147 AEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAH----RIAAVGTDSRPL 222 (303)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHH----HHhhcCCCCCCc
Confidence 2333333222 124567788888887764 55431110000
Q ss_pred -----CCCCC-CHHHHHHHHHHHHHHhhhCCCCcEEe------------CCCccHHHHHHHHHHHHhhc
Q 016228 330 -----RSNYS-EMDYVREELEFAGRIFAQNPVWPVIE------------VTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 330 -----~S~YA-s~e~I~~EL~~A~~lf~k~~g~pVID------------VT~kSIEEtAa~Il~~~~~r 380 (393)
...|. ..+.+.+=++.=+.+|++. --+|| |+++++||++.+|++.+...
T Consensus 223 L~~~~~d~~~~~~~~L~~L~~~R~plY~~A--d~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~ 289 (303)
T PLN02199 223 LHDESGDAYSVAFKRLSAIWDERGEAYTNA--NARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF 289 (303)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHhC--CEEEecccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 11222 1345554445555677773 45678 89999999999999988654
No 30
>PRK06762 hypothetical protein; Provisional
Probab=94.68 E-value=0.13 Score=45.18 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=21.8
Q ss_pred cEEeCCCccHHHHHHHHHHHHhhcc
Q 016228 357 PVIEVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 357 pVIDVT~kSIEEtAa~Il~~~~~r~ 381 (393)
.+|++++.+++|+++.|+..+.-||
T Consensus 142 ~~~~~~~~~~~~v~~~i~~~~~~~~ 166 (166)
T PRK06762 142 ETIFTDNLSLKDIFDAILTDIGLRK 166 (166)
T ss_pred eEEecCCCCHHHHHHHHHHHhccCC
Confidence 4899999999999999999886553
No 31
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=94.50 E-value=0.025 Score=56.68 Aligned_cols=29 Identities=38% Similarity=0.802 Sum_probs=24.8
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016228 252 KADIILSG---VSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 252 eADIVLvG---VSRTsKTPlSmYLA----~~G~KVA 280 (393)
..=||.|| |=+|||||+.+||| .+|+|++
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~ 62 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVG 62 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEE
Confidence 45599999 99999999999999 3678776
No 32
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.27 E-value=0.027 Score=46.41 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=23.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVAN 281 (393)
|+|.|+|+||||=+|-.||+ +|+++-+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~ 29 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVIS 29 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence 78999999999999999996 4887643
No 33
>PRK08233 hypothetical protein; Provisional
Probab=94.26 E-value=0.36 Score=42.32 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=40.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHhhh------CCCCcEEeCCCccHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQ------NPVWPVIEVTGKAIEETAA 371 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~-e~I~~EL~~A~~lf~k------~~g~pVIDVT~kSIEEtAa 371 (393)
.+.+|=|+.+++.+.+-|..|-.. +. .-.+. +.+..=+...+..|.+ ...+-+|| +++++||+.+
T Consensus 98 ~d~~i~l~~~~~~~~~R~~~R~~~-~~------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId-~~~~~e~i~~ 169 (182)
T PRK08233 98 IDVTIFIDTPLDIAMARRILRDFK-ED------TGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLD-GALSVEEIIN 169 (182)
T ss_pred cCEEEEEcCCHHHHHHHHHHHHhh-hc------cccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEc-CCCCHHHHHH
Confidence 356788888888655433334210 00 00111 2222222334444443 11345788 6699999999
Q ss_pred HHHHHHhhc
Q 016228 372 VVLRLYHDR 380 (393)
Q Consensus 372 ~Il~~~~~r 380 (393)
.|.+.+..+
T Consensus 170 ~i~~~l~~~ 178 (182)
T PRK08233 170 QIEEELYRR 178 (182)
T ss_pred HHHHHHHhC
Confidence 999998643
No 34
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.18 E-value=0.29 Score=44.10 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=72.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccCCCCCCcc--------------ccc-----------------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMGVELPKS--------------LFQ----------------------- 296 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp~v~lP~~--------------L~~----------------------- 296 (393)
|||+|+|++|||-+.-+|.+ +.-+.+ +|+.-....|.. -|+
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~-~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~ 83 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKFG-RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSK 83 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTEE-EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcccccc-cceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhhcc
Confidence 79999999999999999984 333332 333322233221 111
Q ss_pred ------cCCCcEEEEecChhHHHHHHHHHHhhcCC----CCC-------CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE
Q 016228 297 ------VDPEKVFGLTINPLVLQSIRKARARSLGF----RDE-------IRSNYSEMDYVREELEFAGRIFAQNPVWPVI 359 (393)
Q Consensus 297 ------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl----~~~-------~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVI 359 (393)
...+|+.=|+++|+-+.++|+.....+.+ ++. ..-...+.+.+.+.+..+++.|.....|-.+
T Consensus 84 ~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd~v 163 (183)
T PF00625_consen 84 SAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEFDYV 163 (183)
T ss_dssp HHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSSEE
T ss_pred chhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcCCEE
Confidence 12345555666877777776532211100 000 0112345677888999999988874123333
Q ss_pred eCCCccHHHHHHHHHHHHhh
Q 016228 360 EVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 360 DVT~kSIEEtAa~Il~~~~~ 379 (393)
=+ +.++|++...|.+++++
T Consensus 164 i~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 164 IV-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp EE-CSSHHHHHHHHHHHHHH
T ss_pred EE-CcCHHHHHHHHHHHHHh
Confidence 22 45899999999998864
No 35
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=94.15 E-value=0.033 Score=56.21 Aligned_cols=28 Identities=43% Similarity=0.612 Sum_probs=22.4
Q ss_pred CcEEEE---ccCCCCCChhhHHhh----hcCceee
Q 016228 253 ADIILS---GVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 253 ADIVLv---GVSRTsKTPlSmYLA----~~G~KVA 280 (393)
.=||-| +|.+|||||+.+||| ++|+||+
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ 83 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPG 83 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 335655 588999999999999 3788887
No 36
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.58 E-value=0.79 Score=40.66 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
+||+|.|++|||=+.-.|+.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 37
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.51 E-value=0.3 Score=44.21 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 336 MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 336 ~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
.+.+++-|+.+ ..+.+. .+-||| ++.++||+++.|++++..
T Consensus 136 ~~~i~~rl~r~-~~~~~a-d~~vi~-~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 136 ASEINARLARA-ARYQPQ-DCHTLN-NDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred HHHHHHHHHHh-hhhccC-CEEEEe-CCCCHHHHHHHHHHHHhh
Confidence 34555555332 234443 567888 788999999999998854
No 38
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.50 E-value=0.72 Score=40.51 Aligned_cols=29 Identities=38% Similarity=0.655 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVANvP 283 (393)
|+|.|+.++|||=++--||+ +|++|..++
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 78999999999999998883 488887664
No 39
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.38 E-value=0.53 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.9
Q ss_pred cEEeCCCccHHHHHHHHHHHHhhc
Q 016228 357 PVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 357 pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
-+||+|..++||++..|++++..+
T Consensus 199 l~IDTs~l~~ee~v~~I~~~i~~~ 222 (225)
T PRK00023 199 LLLDTSGLSIEEVVEKILALVEEK 222 (225)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999653
No 40
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=92.97 E-value=0.066 Score=54.34 Aligned_cols=30 Identities=33% Similarity=0.539 Sum_probs=24.9
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceeee
Q 016228 252 KADIILSG---VSRTGKTPLSIYLA----QKGYKVAN 281 (393)
Q Consensus 252 eADIVLvG---VSRTsKTPlSmYLA----~~G~KVAN 281 (393)
..=||.|| |=+|||||+.+||| ++|+|++-
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~I 91 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGV 91 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEE
Confidence 35588888 88999999999999 36888764
No 41
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=92.91 E-value=0.64 Score=44.01 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
|.|.|.|+||||-++-.|| ++|+.
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~~~ 29 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYA 29 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999 56643
No 42
>PRK14530 adenylate kinase; Provisional
Probab=92.81 E-value=1.4 Score=40.75 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.5
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceee
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
-|+|+|.+++|||=++--|| .+|+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 38999999999999999999 6787544
No 43
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=92.74 E-value=0.11 Score=52.41 Aligned_cols=40 Identities=45% Similarity=0.657 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCcCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016228 241 QDDGALPQNLQKADIILSG---VSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 241 hDDG~~p~~L~eADIVLvG---VSRTsKTPlSmYLA----~~G~KVA 280 (393)
||-|.-..-=..+=||-|| |=+|||||+.+||| .+|||++
T Consensus 23 y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~ 69 (326)
T PF02606_consen 23 YDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPA 69 (326)
T ss_pred HhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceE
Confidence 3445444444456688888 77999999999999 5788876
No 44
>PRK00625 shikimate kinase; Provisional
Probab=92.74 E-value=1.2 Score=40.85 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=72.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee----------------cc--------------------------ccC----C
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVAN----------------VP--------------------------IVM----G 287 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVAN----------------vP--------------------------LVp----~ 287 (393)
|+|+|..++|||=++-.||+ .|++.-- ++ .|- +
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~GGg 82 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVALGGG 82 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 89999999999999999994 5775411 11 000 1
Q ss_pred CCCCcccccc--CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCc-----EEe
Q 016228 288 VELPKSLFQV--DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWP-----VIE 360 (393)
Q Consensus 288 v~lP~~L~~i--~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~p-----VID 360 (393)
..+.++.|+. ..+.+|-|+.+++.+. +|++.=++.. ...| .+.+.+-++.=..+|++...+. |++
T Consensus 83 ~~~~~e~~~~l~~~~~Vv~L~~~~e~l~----~Rl~~R~~~~--~~~~--~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~~ 154 (173)
T PRK00625 83 TLMIEPSYAHIRNRGLLVLLSLPIATIY----QRLQKRGLPE--RLKH--APSLEEILSQRIDRMRSIADYIFSLDHVAE 154 (173)
T ss_pred ccCCHHHHHHHhcCCEEEEEECCHHHHH----HHHhcCCCCc--ccCc--HHHHHHHHHHHHHHHHHHCCEEEeCCCccc
Confidence 2233333322 3356888999977665 4554333321 1223 5677777888888898832232 367
Q ss_pred CCCccHHHHHHHHHHHH
Q 016228 361 VTGKAIEETAAVVLRLY 377 (393)
Q Consensus 361 VT~kSIEEtAa~Il~~~ 377 (393)
++++|+-..+..|+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 155 TSSESLMRACQSFCTLL 171 (173)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 77899888888887654
No 45
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.60 E-value=0.31 Score=41.56 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|+|+|+++||||-++-.|| ..|+..-+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7999999999999999999 55775433
No 46
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=92.49 E-value=1.6 Score=47.79 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=44.3
Q ss_pred EEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhC---------CCCcEEeCCCccHHHHHHHH
Q 016228 303 FGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQN---------PVWPVIEVTGKAIEETAAVV 373 (393)
Q Consensus 303 ~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~---------~g~pVIDVT~kSIEEtAa~I 373 (393)
|=||-+++.=.+-|-..++..|. =.+.+.+.+|+..=.+. ..+ .+--+||+|+.+|||+...|
T Consensus 578 ifl~a~~~~Ra~Rr~~~~~~~~~-------~~~~~~~~~~~~~Rd~~-d~~R~~~pl~~~~da~~idts~~~~~~v~~~i 649 (661)
T PRK11860 578 VFLTASAEARAERRYKQLISKGI-------SANIADLLADLEARDAR-DTQRSVAPLKPAQDALLLDNSDLTIEQAVAQV 649 (661)
T ss_pred EEEECChhHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHhHH-hhcCCCCCCccCCCEEEEECCCCCHHHHHHHH
Confidence 44777776544444444444443 15677888887432221 111 13458999999999999999
Q ss_pred HHHHhh
Q 016228 374 LRLYHD 379 (393)
Q Consensus 374 l~~~~~ 379 (393)
++++..
T Consensus 650 ~~~i~~ 655 (661)
T PRK11860 650 LDWWQE 655 (661)
T ss_pred HHHHHh
Confidence 999964
No 47
>PRK14528 adenylate kinase; Provisional
Probab=92.18 E-value=0.42 Score=43.66 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=70.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec------------c-------------ccC-------------CC-------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV------------P-------------IVM-------------GV------- 288 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv------------P-------------LVp-------------~v------- 288 (393)
|+++|.+++|||-+|-+|| .+|+.+.+. | ++| ..
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~v 83 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGFL 83 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcEE
Confidence 8999999999999999999 556655311 1 111 00
Q ss_pred --CCCcc------ccc------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHH-------HHHHHHH
Q 016228 289 --ELPKS------LFQ------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVR-------EELEFAG 347 (393)
Q Consensus 289 --~lP~~------L~~------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~-------~EL~~A~ 347 (393)
..|.. |++ .....++-|+++++.+.+--..|....|-.+ -+.|.++ ++..-.-
T Consensus 84 iDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~d------d~~e~i~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 84 LDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRAD------DNEATIKNRLDNYNKKTLPLL 157 (186)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCC------CCHHHHHHHHHHHHHHhHHHH
Confidence 13432 211 3567899999999988764344433233221 1233443 3344455
Q ss_pred HHhhhCCCCcEEeCCCccHHHHHHHHHHH
Q 016228 348 RIFAQNPVWPVIEVTGKAIEETAAVVLRL 376 (393)
Q Consensus 348 ~lf~k~~g~pVIDVT~kSIEEtAa~Il~~ 376 (393)
+.|++.-.|..|| .++++||+...|.+.
T Consensus 158 ~~y~~~~~~~~i~-~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 158 DFYAAQKKLSQVN-GVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHhCCCEEEEE-CCCCHHHHHHHHHHh
Confidence 6677642367777 567899999988754
No 48
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=92.13 E-value=0.11 Score=52.97 Aligned_cols=29 Identities=45% Similarity=0.748 Sum_probs=25.1
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016228 252 KADIILSG---VSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 252 eADIVLvG---VSRTsKTPlSmYLA----~~G~KVA 280 (393)
.+=||.|| |-+|||||+.|||| ++|+|+.
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~g 81 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVG 81 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeE
Confidence 47799999 88999999999999 5788775
No 49
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=91.89 E-value=0.9 Score=45.57 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=77.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCce-eeeccccC-------------------------CCCCCccccc--------cCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYK-VANVPIVM-------------------------GVELPKSLFQ--------VDPE 300 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~K-VANvPLVp-------------------------~v~lP~~L~~--------i~~~ 300 (393)
||+-|.|++|||=-.=-|=..||- |-|+|+.- .-.....+++ -..-
T Consensus 4 vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~ 83 (284)
T PF03668_consen 4 VIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELRKKGIDV 83 (284)
T ss_pred EEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHHhcCCce
Confidence 688899999999888788888854 56888642 0011111111 1123
Q ss_pred cEEEEecChhHHHHHHHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 301 KVFGLTINPLVLQSIRKA-RARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 301 KI~GLTIdP~rL~~IR~e-Rl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
+|+=|+.+.+.|.+-=++ |++ ==| ...-..+|.|++|-+.-..|-.. .--|||+|+.++-|....|.+.+..
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~-HPL----~~~~~~le~I~~Er~~L~~lr~~--Ad~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRR-HPL----SSDGSLLEAIEKERELLEPLRER--ADLVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred EEEEEECChHHHHHHHHhccCC-CCC----CCCCCcHHHHHHHHHHHHHHHHh--CCEEEECCCCCHHHHHHHHHHHhcc
Confidence 466666666666652222 221 111 12234578899998877777555 3579999999999999999998865
Q ss_pred c
Q 016228 380 R 380 (393)
Q Consensus 380 r 380 (393)
.
T Consensus 157 ~ 157 (284)
T PF03668_consen 157 D 157 (284)
T ss_pred C
Confidence 4
No 50
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=91.68 E-value=2.1 Score=38.73 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=70.0
Q ss_pred EEEEccCCCCCChhhHHhhhc---Cceeeec----cccC------------------------------------CCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQK---GYKVANV----PIVM------------------------------------GVELP 291 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~---G~KVANv----PLVp------------------------------------~v~lP 291 (393)
|||+|+|++||+-++-.|.+. +|..+-- |.-| +++.+
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~ 84 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKE 84 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHH
Confidence 899999999999999999865 4433310 1101 11111
Q ss_pred ccccccCCCcEEEEecChhHHHHHHHHHHhhcC--C--CCC-------CCCCCCCHHHHHHHHHHHHHHhhhCCC-CcEE
Q 016228 292 KSLFQVDPEKVFGLTINPLVLQSIRKARARSLG--F--RDE-------IRSNYSEMDYVREELEFAGRIFAQNPV-WPVI 359 (393)
Q Consensus 292 ~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lG--l--~~~-------~~S~YAs~e~I~~EL~~A~~lf~k~~g-~pVI 359 (393)
..--.+..+|++=|+++|+-+.++++.-....- + ++. ..-.=-+.+.+++-|..|++.+... + +-.+
T Consensus 85 ~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~-~~fd~~ 163 (184)
T smart00072 85 TIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY-HLFDYV 163 (184)
T ss_pred HHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-ccCCEE
Confidence 001112347788889998888777642111000 0 000 0000124577888888888877652 2 2222
Q ss_pred eCCCccHHHHHHHHHHHHhh
Q 016228 360 EVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 360 DVT~kSIEEtAa~Il~~~~~ 379 (393)
=+ +-..+++...+.+++..
T Consensus 164 I~-n~~l~~~~~~l~~~i~~ 182 (184)
T smart00072 164 IV-NDDLEDAYEELKEILEA 182 (184)
T ss_pred EE-CcCHHHHHHHHHHHHHh
Confidence 12 23799999999888854
No 51
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=91.19 E-value=0.57 Score=49.00 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=30.4
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
-|||.|||-+.+|||=|---|.+.--|+||||.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT 191 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT 191 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcc
Confidence 5899999999999999888888777899999976
No 52
>PRK13975 thymidylate kinase; Provisional
Probab=91.04 E-value=1.2 Score=39.91 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=45.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHH---HhhhCCCCcEEeCCCccHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGR---IFAQNPVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs---~e~I~~EL~~A~~---lf~k~~g~pVIDVT~kSIEEtAa~ 372 (393)
++.+|-|+++++.+.+ |+..-+. ..+.+ .+++.++...--. .+.+. +|-+||++++++||+++.
T Consensus 114 pd~vi~L~~~~e~~~~----Rl~~r~~-----~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~Id~~~~~~eev~~~ 183 (196)
T PRK13975 114 PDLVFLLDVDIEEALK----RMETRDK-----EIFEKKEFLKKVQEKYLELANNEKFMPKY-GFIVIDTTNKSIEEVFNE 183 (196)
T ss_pred CCEEEEEcCCHHHHHH----HHhccCc-----cccchHHHHHHHHHHHHHHHhhcccCCcC-CEEEEECCCCCHHHHHHH
Confidence 5679999999998865 3321121 12322 2344444322111 12243 689999999999999999
Q ss_pred HHHHHhhc
Q 016228 373 VLRLYHDR 380 (393)
Q Consensus 373 Il~~~~~r 380 (393)
|++.+..+
T Consensus 184 I~~~i~~~ 191 (196)
T PRK13975 184 ILNKIKDK 191 (196)
T ss_pred HHHHHHHh
Confidence 99998654
No 53
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=90.58 E-value=2.1 Score=45.49 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=64.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCc-------------------------------------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPK------------------------------------- 292 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvPLVp----~v~lP~------------------------------------- 292 (393)
|+|+|..+||||=++-.|| ..|+.+...=-+- +..+++
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv~ 82 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVVI 82 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcccc
Confidence 8999999999999999999 5777553221100 111110
Q ss_pred -----cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016228 293 -----SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 367 (393)
Q Consensus 293 -----~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIE 367 (393)
+++. +..+|-|+.+++.| .+|++.-+- +-... ..+++++-++.=+.+|++. -+||+++++++
T Consensus 83 ~~~~r~~l~--~~~vI~L~as~e~l----~~Rl~~~~R---PLl~~-~~e~l~~L~~~R~~lY~~~---~~IDt~~~s~~ 149 (488)
T PRK13951 83 DPENRELLK--KEKTLFLYAPPEVL----MERVTTENR---PLLRE-GKERIREIWERRKQFYTEF---RGIDTSKLNEW 149 (488)
T ss_pred ChHHHHHHh--cCeEEEEECCHHHH----HHHhccCCC---CCccc-cHHHHHHHHHHHHHHHhcc---cEEECCCCCHH
Confidence 1121 23366677777654 345532121 11111 2466765555556777763 48999999998
Q ss_pred HHHHHHHH
Q 016228 368 ETAAVVLR 375 (393)
Q Consensus 368 EtAa~Il~ 375 (393)
|++..|+-
T Consensus 150 e~~~~iv~ 157 (488)
T PRK13951 150 ETTALVVL 157 (488)
T ss_pred HHHHHHHH
Confidence 88877753
No 54
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=90.35 E-value=1.8 Score=40.43 Aligned_cols=113 Identities=20% Similarity=0.265 Sum_probs=73.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccC---------CCCCCccccc--------------------c-------
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM---------GVELPKSLFQ--------------------V------- 297 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp---------~v~lP~~L~~--------------------i------- 297 (393)
-|||||.-++|||-....||+. -|+|++. +..+|+ +|+ .
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~----L~~~F~D~D~~Ie~~~g~sI~e-IF~~~GE~~FR~~E~~vl~~l~~~~~~ViaT 78 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKA----LNLPFIDTDQEIEKRTGMSIAE-IFEEEGEEGFRRLETEVLKELLEEDNAVIAT 78 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHH----cCCCcccchHHHHHHHCcCHHH-HHHHHhHHHHHHHHHHHHHHHhhcCCeEEEC
Confidence 4899999999999999999943 4666664 222221 111 1
Q ss_pred ---------------CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHhhhCCCCcEEeC
Q 016228 298 ---------------DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQNPVWPVIEV 361 (393)
Q Consensus 298 ---------------~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~-e~I~~EL~~A~~lf~k~~g~pVIDV 361 (393)
....+|=|..+++.|.+ |++ .-..-|--.=.+. +.+++=++.=.-+|++. .-.++++
T Consensus 79 GGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~----Rl~--~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~-a~~~~~~ 151 (172)
T COG0703 79 GGGAVLSEENRNLLKKRGIVVYLDAPFETLYE----RLQ--RDRKRPLLQTEDPREELEELLEERQPLYREV-ADFIIDT 151 (172)
T ss_pred CCccccCHHHHHHHHhCCeEEEEeCCHHHHHH----Hhc--cccCCCcccCCChHHHHHHHHHHHHHHHHHh-CcEEecC
Confidence 23467888888888865 442 0000011111223 33444445556688886 7899999
Q ss_pred CCccHHHHHHHHHHHHhh
Q 016228 362 TGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 362 T~kSIEEtAa~Il~~~~~ 379 (393)
++++ ++++..|++.+..
T Consensus 152 ~~~~-~~v~~~i~~~l~~ 168 (172)
T COG0703 152 DDRS-EEVVEEILEALEG 168 (172)
T ss_pred CCCc-HHHHHHHHHHHHH
Confidence 9999 9999999998854
No 55
>PRK14527 adenylate kinase; Provisional
Probab=90.20 E-value=3 Score=37.82 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=41.1
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHH-------HHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYV-------REELEFAGRIFAQNPVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I-------~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~ 372 (393)
..++-|+++++.+.+ |+..-+... ..+.+ +.+.+ .++.....+.|++.-.+..|| -++++||+...
T Consensus 113 ~~vi~l~~~~~~~~~----Rl~~R~~~~-~r~dd-~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id-~~~~~~~v~~~ 185 (191)
T PRK14527 113 LAVVLLEVPDEELIR----RIVERARQE-GRSDD-NEETVRRRQQVYREQTQPLVDYYEARGHLKRVD-GLGTPDEVYAR 185 (191)
T ss_pred CEEEEEECCHHHHHH----HHHcCcccC-CCCCC-CHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEE-CCCCHHHHHHH
Confidence 346778888876654 443222211 12223 23333 234444556677642357788 66899999999
Q ss_pred HHHHH
Q 016228 373 VLRLY 377 (393)
Q Consensus 373 Il~~~ 377 (393)
|...+
T Consensus 186 i~~~l 190 (191)
T PRK14527 186 ILKAL 190 (191)
T ss_pred HHHhh
Confidence 98765
No 56
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.18 Score=51.96 Aligned_cols=50 Identities=38% Similarity=0.608 Sum_probs=39.9
Q ss_pred HHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 226 EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 226 ~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
-+.|+||..-+ ..|| =.|.+..|.|||+.+||||=|.--|| |.-|||+..
T Consensus 78 YNHYKRl~~~~---~~~d----vEL~KSNILLiGPTGsGKTlLAqTLA----k~LnVPFai 127 (408)
T COG1219 78 YNHYKRLNNKE---DNDD----VELSKSNILLIGPTGSGKTLLAQTLA----KILNVPFAI 127 (408)
T ss_pred hhHHHHHhccC---CCCc----eeeeeccEEEECCCCCcHHHHHHHHH----HHhCCCeee
Confidence 45789998766 4444 67999999999999999997777776 457999875
No 57
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=89.94 E-value=1.8 Score=46.30 Aligned_cols=74 Identities=23% Similarity=0.298 Sum_probs=43.9
Q ss_pred EEEecChhHHHHHH-HHHHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 303 FGLTINPLVLQSIR-KARARSLGFRDEIRSNYSE-MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 303 ~GLTIdP~rL~~IR-~eRl~~lGl~~~~~S~YAs-~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
|=++|+-+..+.=| ..|-+.++.+. +...|.. .+.|+.==+|--+--+++ ++|+|| +-.|++|-..|++.+-++
T Consensus 387 flv~isdeeeH~~Rf~~Ra~~~~~~r-~~~ky~~~f~~IR~IQdyLv~~A~~~-~ipvI~--n~nid~tv~~~l~~i~~~ 462 (475)
T PRK12337 387 MLVTLPDEALHRRRFELRDRETGASR-PRERYLRHFEEIRLIQDHLLRLARQE-GVPVLP--GEDLDESIDKALEVVLRR 462 (475)
T ss_pred EEEEECCHHHHHHHHHHHhhhccCCC-chhHHHHhHHHHHHHHHHHHHHHHHc-CCCeec--CccHHHHHHHHHHHHHHH
Confidence 46677766666644 34555555443 3556654 233333233444445666 999995 556888888888877655
No 58
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.70 E-value=1.5 Score=37.76 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=49.5
Q ss_pred HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 016228 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGI 189 (393)
Q Consensus 110 TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi 189 (393)
-|+.+.+.+...+|++ ++..++. .+ +.+.+.+.+++ --+||.++-+.+.+..+.+.|.++++
T Consensus 57 Ka~~~~~~l~~~np~~--------~v~~~~~-----~~-~~~~~~~~~~~----~d~vi~~~d~~~~~~~l~~~~~~~~~ 118 (135)
T PF00899_consen 57 KAEAAKERLQEINPDV--------EVEAIPE-----KI-DEENIEELLKD----YDIVIDCVDSLAARLLLNEICREYGI 118 (135)
T ss_dssp HHHHHHHHHHHHSTTS--------EEEEEES-----HC-SHHHHHHHHHT----SSEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCce--------eeeeeec-----cc-ccccccccccC----CCEEEEecCCHHHHHHHHHHHHHcCC
Confidence 4777788888888873 3444433 02 55666666633 24999999999999999999999999
Q ss_pred CEeecc
Q 016228 190 PSTDVL 195 (393)
Q Consensus 190 ~~vDll 195 (393)
|+|+..
T Consensus 119 p~i~~~ 124 (135)
T PF00899_consen 119 PFIDAG 124 (135)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 999863
No 59
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=88.97 E-value=2.8 Score=44.95 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=70.6
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeecc-ccC---CCCCCc------------------------------------
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGYKVANVP-IVM---GVELPK------------------------------------ 292 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~KVANvP-LVp---~v~lP~------------------------------------ 292 (393)
-|||||..++|||=+.-.||+ .|++.--.= ++. +..+++
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GGG~v 87 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGGGAP 87 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCCchh
Confidence 489999999999999999994 565432100 000 111111
Q ss_pred ---cccc------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHHHHHHHHhhhCCCCcEEeC
Q 016228 293 ---SLFQ------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREELEFAGRIFAQNPVWPVIEV 361 (393)
Q Consensus 293 ---~L~~------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA--s~e~I~~EL~~A~~lf~k~~g~pVIDV 361 (393)
+-.+ .....+|=|+.+++.|.+ |++.-+ ....+. +.+++++=++.=+.+|++. -.-+||+
T Consensus 88 ~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~----Rl~~~~----~RPll~~~~~~~~~~l~~~R~~~Y~~~-Ad~~i~~ 158 (542)
T PRK14021 88 MTPSTQHALASYIAHGGRVVYLDADPKEAME----RANRGG----GRPMLNGDANKRWKKLFKQRDPVFRQV-ANVHVHT 158 (542)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEECCHHHHHH----HHhCCC----CCCCCCCCcHHHHHHHHHHHHHHHHhh-CCEEEEC
Confidence 1011 122356777778777764 443111 011221 2344443334446778884 5678999
Q ss_pred CCccHHHHHHHHHHHHhhc
Q 016228 362 TGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 362 T~kSIEEtAa~Il~~~~~r 380 (393)
+++++||++..|++.+...
T Consensus 159 ~~~~~~~~~~~i~~~~~~~ 177 (542)
T PRK14021 159 RGLTPQAAAKKLIDMVAER 177 (542)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999988653
No 60
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=88.95 E-value=0.32 Score=37.11 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVANvP 283 (393)
+++.|-.++|||+++..||+ .|+||..+-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 56778899999999998883 399998775
No 61
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.72 E-value=0.32 Score=39.88 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
|+|.|+++||||=++-.|| +.|+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc
Confidence 6899999999999999999 45543
No 62
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=88.14 E-value=1.4 Score=44.38 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
-|||.|||.+.+|||=|--.|.+.-.+|+|||.+-
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT 191 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT 191 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc
Confidence 49999999999999999888887668999999763
No 63
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=88.03 E-value=1.2 Score=44.59 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVA 280 (393)
|+|+|+++||||-++.-||+ .|..+.
T Consensus 7 i~i~GptgsGKt~la~~la~~~~~~ii 33 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLNGEII 33 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCCcEE
Confidence 89999999999999999994 454333
No 64
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=87.87 E-value=2.4 Score=38.11 Aligned_cols=115 Identities=17% Similarity=0.042 Sum_probs=65.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecC---hhHHHHHHHHHHh-hcCCCC-
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTIN---PLVLQSIRKARAR-SLGFRD- 327 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTId---P~rL~~IR~eRl~-~lGl~~- 327 (393)
.-||++|.+++|||=+...|.+. .-.-++|...+...|...+..+..++--..+| -+++..++..... .-|.-.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD-EFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC-cCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 45999999999999999988754 44445665556677777766665544444444 4566666655531 111100
Q ss_pred CCCCCCCCHHHHHHHHH-HHHHHhhhCCCCcEEeCCCccHHHHH
Q 016228 328 EIRSNYSEMDYVREELE-FAGRIFAQNPVWPVIEVTGKAIEETA 370 (393)
Q Consensus 328 ~~~S~YAs~e~I~~EL~-~A~~lf~k~~g~pVIDVT~kSIEEtA 370 (393)
-....-.+.+.+.+++. ..+..... +.|+|+|-+|.=-...
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE 126 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence 01122133334444433 33333321 5899999887644433
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=87.63 E-value=4.2 Score=44.90 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHH-----HHH--hhhCCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 334 SEMDYVREELEFA-----GRI--FAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 334 As~e~I~~EL~~A-----~~l--f~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
.+.+.|.+|+..= |.+ ....-++-+||+|+.++||+...|++++.+-
T Consensus 179 ~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~~ 232 (712)
T PRK09518 179 ETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDA 232 (712)
T ss_pred CCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHhh
Confidence 6777777776432 222 2333367899999999999999999988653
No 66
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=0.34 Score=51.67 Aligned_cols=46 Identities=30% Similarity=0.485 Sum_probs=34.5
Q ss_pred hhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 237 FTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 237 FAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
++..-|+-..--.|++..|+|+|+|++|||=|.-=|| |+-|||++-
T Consensus 211 ~~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLA----r~ldVPfaI 256 (564)
T KOG0745|consen 211 IAKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLA----RVLDVPFAI 256 (564)
T ss_pred hcccccccccceeeecccEEEECCCCCchhHHHHHHH----HHhCCCeEE
Confidence 3334444443457999999999999999996555555 789999985
No 67
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.91 E-value=0.92 Score=39.59 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=51.8
Q ss_pred EEEEccCCCCCChhhHHhhhc-C-ceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHH-HHHHhhcCCCCCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-G-YKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIR-KARARSLGFRDEIRS 331 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-G-~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR-~eRl~~lGl~~~~~S 331 (393)
|+|+|.|++|||-+.-.|++. . --...++.+-.-+-+.+ .+.....-+ +.+.+.+.. +...-..+.- .+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e---~~g~~~~~v--~~~~~~~~~~~~~f~e~~~~--~~~ 74 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE---VDGVDYHFV--SKEEFERLIENGEFLEWAEF--HGN 74 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc---cCCceeEEe--CHHHHHHHHHcCCeEEEEEE--cCE
Confidence 789999999999999999954 1 11223333333333333 233333333 344443321 1111111110 123
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016228 332 NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 367 (393)
Q Consensus 332 ~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIE 367 (393)
.|...... .++++++. .++|+|++..++.
T Consensus 75 ~yg~~~~~------i~~~~~~g-~~~il~~~~~~~~ 103 (137)
T cd00071 75 YYGTSKAA------VEEALAEG-KIVILEIDVQGAR 103 (137)
T ss_pred EecCcHHH------HHHHHhCC-CeEEEEecHHHHH
Confidence 45554332 33456776 7999999877763
No 68
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.26 E-value=14 Score=34.01 Aligned_cols=122 Identities=11% Similarity=0.136 Sum_probs=65.9
Q ss_pred EEEEccCCCCCChhhHHhhhc--CceeeeccccCCCCCCccc------------c-------------------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQK--GYKVANVPIVMGVELPKSL------------F------------------------- 295 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~--G~KVANvPLVp~v~lP~~L------------~------------------------- 295 (393)
|||+|+|++|||-+.=+|.+. ++ ..-+|.+-.-+=|-|. |
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~ 85 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKA 85 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHH
Confidence 899999999999999999854 22 2224444222222211 0
Q ss_pred ----ccCCCcEEEEecChhHHHHHHHHHHhh----cCCCCC---------CCCCCCCHHHHHHHHHHHHHHhhhCCCCcE
Q 016228 296 ----QVDPEKVFGLTINPLVLQSIRKARARS----LGFRDE---------IRSNYSEMDYVREELEFAGRIFAQNPVWPV 358 (393)
Q Consensus 296 ----~i~~~KI~GLTIdP~rL~~IR~eRl~~----lGl~~~---------~~S~YAs~e~I~~EL~~A~~lf~k~~g~pV 358 (393)
....+|++=|+++++-+..+|+. ... .=+..+ ..-.--+.+.+++=|+.+..-+.+.-.|-.
T Consensus 86 ~i~~~~~~g~~~i~d~~~~g~~~l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~D~ 164 (186)
T PRK14737 86 FIEDAFKEGRSAIMDIDVQGAKIIKEK-FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDY 164 (186)
T ss_pred HHHHHHHcCCeEEEEcCHHHHHHHHHh-CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCE
Confidence 13447788888998888888752 100 001000 000112444555545554432332112332
Q ss_pred EeCCCccHHHHHHHHHHHHhh
Q 016228 359 IEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 359 IDVT~kSIEEtAa~Il~~~~~ 379 (393)
|=+.+ ..|++-..+.+++..
T Consensus 165 vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 165 KIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred EEECc-CHHHHHHHHHHHHhc
Confidence 22233 789999999888754
No 69
>PLN02796 D-glycerate 3-kinase
Probab=85.96 E-value=4.6 Score=41.64 Aligned_cols=112 Identities=24% Similarity=0.235 Sum_probs=71.4
Q ss_pred cccCcCCHHHHHHHHHHHhhCCCEEE-EEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCC
Q 016228 143 QFCQIDDVEQLMVIIKQAAKDGAMLV-YTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRN 221 (393)
Q Consensus 143 ~~~~V~t~e~l~~ii~~a~~~~~iV~-~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~ 221 (393)
+.|.|.+.+.+.+.| -.||++= +-|...++++.+.+...- ...+.+.||...
T Consensus 7 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~----------- 59 (347)
T PLN02796 7 TPPDVSDVADLREFI----CSGPLISKLGLTAEDVAESIDEWIAH------------GLRLCRLLQFDE----------- 59 (347)
T ss_pred CCCCcccHHHHHHHH----hcCcchhhhCCCHHHHHHHHHHHHHH------------HHHHHHHcCCCc-----------
Confidence 345588888877765 3455543 445566777777666541 667777888776
Q ss_pred CCCcHHHHhhhh------------hhhhhhh-CCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016228 222 FPLSEEYFRRIE------------AIEFTIK-QDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 284 (393)
Q Consensus 222 ~~ld~~YF~RIe------------AIEFAlk-hDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~----~G~KVANvPL 284 (393)
..|++.|..|+. -+++.++ +-+|...+-+- |.|+|.|+||||=|+-.|+. .|++++.+.+
T Consensus 60 ~~l~~~~~~~~~~~~~P~~~~il~~l~~~~~~~~~G~~~~pli---IGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~Isi 136 (347)
T PLN02796 60 LSLSASQKARVYHYYLPVYLWCEDQLEAHRSKFKDGDEIPPLV---IGISAPQGCGKTTLVFALVYLFNATGRRAASLSI 136 (347)
T ss_pred ccCCHHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCCCEE---EEEECCCCCcHHHHHHHHHHHhcccCCceeEEEE
Confidence 346677777765 3333331 12444322222 77889999999999988882 3677877775
No 70
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=85.47 E-value=2.6 Score=45.27 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=38.1
Q ss_pred hhhhhhhhCCCCCCCCC----CCcCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 233 EAIEFTIKQDDGALPQN----LQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 233 eAIEFAlkhDDG~~p~~----L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
.|=.||..=.-|..-.- =.-|||+|||.+.+|||-|-=-|.+.--|+||||.+
T Consensus 136 ~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT 192 (500)
T PRK12296 136 KAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFT 192 (500)
T ss_pred CCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcc
Confidence 34455555444443321 123999999999999999988888666899999976
No 71
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=84.97 E-value=0.57 Score=40.93 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
|+|+|.|+||||=++..|| +.|+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~ 25 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK 25 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe
Confidence 6899999999999999999 44633
No 72
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=84.89 E-value=0.3 Score=42.92 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMG 287 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~ 287 (393)
|+|.|-..||||=|+--||.+ |+|+|+|
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-----g~~~v~E 29 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-----GYPVVPE 29 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-----T-EEE--
T ss_pred EEEECCCCCCHHHHHHHHHHc-----CCeEEee
Confidence 799999999999999999976 7778874
No 73
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.50 E-value=0.62 Score=41.82 Aligned_cols=28 Identities=36% Similarity=0.647 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVANv 282 (393)
|.++|.+++|||-++.+|+. +||||+=+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 67899999999999998883 59999844
No 74
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.11 E-value=0.82 Score=40.39 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPL 284 (393)
|+|+|.|++|||.+.-.|++ .+....+++.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~ 34 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISA 34 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCccccccccc
Confidence 79999999999999999995 3434445443
No 75
>PRK06217 hypothetical protein; Validated
Probab=83.99 E-value=0.75 Score=41.50 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVA 280 (393)
|+|+|.|+||||=++--||+ .|+.+-
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 89999999999999999994 476544
No 76
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=83.99 E-value=0.43 Score=38.93 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G 276 (393)
|+|-|.++||||=++-||++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999774
No 77
>PRK06526 transposase; Provisional
Probab=83.72 E-value=0.69 Score=44.93 Aligned_cols=49 Identities=27% Similarity=0.450 Sum_probs=37.5
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 223 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 223 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
.++...+....+.+|.-.+ -.++|+|.++||||=|+..|+ ++|++|.-+
T Consensus 80 ~~~~~~~~~l~~~~fi~~~-----------~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 80 SLKRDTIAHLGTLDFVTGK-----------ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CcchHHHHHHhcCchhhcC-----------ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 4666777778888887321 248999999999999999887 468887553
No 78
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=83.46 E-value=4.8 Score=36.07 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhCC-CEEEEEcC--------------CHHHHHHHHHHHHHcCCCEeecchHHHHHHHH
Q 016228 150 VEQLMVIIKQAAKDG-AMLVYTLA--------------DPSMAESAKKACELWGIPSTDVLGPITEAIAS 204 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~-~iV~~Tlv--------------d~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~ 204 (393)
.+.+.++|+.+++.+ .+|+.|.. ...+.+.+++.|+++|++++|+..++...++.
T Consensus 93 ~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~~~~~~~ 162 (198)
T cd01821 93 KEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDLNAASRALYEA 162 (198)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEecHHHHHHHHHH
Confidence 345666777776555 34444421 24667899999999999999999888776554
No 79
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=83.26 E-value=0.91 Score=40.31 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|+|.++||||=+|-.|| .+|+.+-+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 7999999999999999999 458877664
No 80
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.10 E-value=7.1 Score=34.38 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+|+|.|+||||-++-.|+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999994
No 81
>PRK07261 topology modulation protein; Provisional
Probab=82.77 E-value=0.91 Score=41.00 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVA 280 (393)
|+++|.|++|||=++--|+. .|+.+-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i 29 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVL 29 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeE
Confidence 78999999999999999994 455443
No 82
>PRK00300 gmk guanylate kinase; Provisional
Probab=82.76 E-value=0.72 Score=41.70 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|+|.|+||||-|+-.|++.
T Consensus 8 i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 799999999999999999954
No 83
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.60 E-value=0.98 Score=38.32 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=53.5
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCC
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSN 332 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~ 332 (393)
.|+|+|.++||||=+.-||| ..|+++--+.+-.....- .|+. +.+++ -....+ ..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~-dl~g-------~~~~~-----------~~~~~~---~~~~ 58 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEE-DLIG-------SYDPS-----------NGQFEF---KDGP 58 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHH-HHHC-------EEET------------TTTTCE---EE-C
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccc-ccee-------eeeec-----------cccccc---cccc
Confidence 48999999999999999999 456666555554443322 2211 11111 000000 0112
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhcc
Q 016228 333 YSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 333 YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r~ 381 (393)
+...-+ +. +|-+||==+++-+++-..++..++++.
T Consensus 59 l~~a~~-------------~~-~il~lDEin~a~~~v~~~L~~ll~~~~ 93 (139)
T PF07728_consen 59 LVRAMR-------------KG-GILVLDEINRAPPEVLESLLSLLEERR 93 (139)
T ss_dssp CCTTHH-------------EE-EEEEESSCGG--HHHHHTTHHHHSSSE
T ss_pred cccccc-------------ce-eEEEECCcccCCHHHHHHHHHHHhhCc
Confidence 221111 43 788999989988999999999997764
No 84
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.35 E-value=5.6 Score=37.52 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=53.7
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHH
Q 016228 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPS 175 (393)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~e 175 (393)
.++.|+-.+..|.. |+.+++.+...+|++ ++..++. .+ +.+.+.+++.+ --+||.++-+++
T Consensus 62 ~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~--------~i~~~~~-----~i-~~~~~~~~~~~----~DvVi~~~d~~~ 123 (228)
T cd00757 62 QRQILHTEADVGQPKAEAAAERLRAINPDV--------EIEAYNE-----RL-DAENAEELIAG----YDLVLDCTDNFA 123 (228)
T ss_pred ccccccChhhCCChHHHHHHHHHHHhCCCC--------EEEEecc-----ee-CHHHHHHHHhC----CCEEEEcCCCHH
Confidence 35566655556644 566666666666763 2333332 03 34555555543 248999999999
Q ss_pred HHHHHHHHHHHcCCCEeec
Q 016228 176 MAESAKKACELWGIPSTDV 194 (393)
Q Consensus 176 Lr~~l~~~~~~~gi~~vDl 194 (393)
.|..+.+.|.++++|+|+.
T Consensus 124 ~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 124 TRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999996
No 85
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=82.21 E-value=0.97 Score=41.67 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=25.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|+|.+++|||-+|-.|| .+|+.+-+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 8999999999999999999 678887654
No 86
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=82.04 E-value=8.4 Score=38.85 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=91.7
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEEE
Q 016228 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVYT 170 (393)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~T 170 (393)
...++.+++|.|-- .+...++.=......+ +..++.+.||- --|++++.+.|++..++. +|+|+=
T Consensus 29 ~~P~Lavilvgddp--aS~~YV~~K~k~~~~i----Gi~~~~~~l~~------~~t~~eLl~~I~~lN~D~~v~GIlVQl 96 (283)
T COG0190 29 FKPGLAVILVGDDP--ASQVYVRSKKKAAEEI----GIASELYDLPE------DITEEELLALIDELNADPEVDGILVQL 96 (283)
T ss_pred CCceEEEEEeCCCH--HHHHHHHHHHHHHHHc----CCeeEEEeCCC------cCCHHHHHHHHHHhcCCCCCcEEEEeC
Confidence 36678889998877 4455555444333332 24577777777 889999999999985444 666642
Q ss_pred cCCHHH--HHHHHHHHHHcCCCEeecchH-HHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCC
Q 016228 171 LADPSM--AESAKKACELWGIPSTDVLGP-ITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALP 247 (393)
Q Consensus 171 lvd~eL--r~~l~~~~~~~gi~~vDll~p-~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p 247 (393)
=.=+.+ ...++..+-+++ +|=|.| -++.|.. | ++.-.| ..| .||=--+++=+.
T Consensus 97 PLp~hld~~~il~~I~p~KD---VDG~hp~N~g~L~~--~-~~~~~P-CTp--------------~gi~~ll~~~~i--- 152 (283)
T COG0190 97 PLPKHLDEQKLLQAIDPEKD---VDGFHPYNLGKLAQ--G-EPGFLP-CTP--------------AGIMTLLEEYGI--- 152 (283)
T ss_pred CCCCCCCHHHHHhhcCcCCC---ccccChhHhcchhc--C-CCCCCC-CCH--------------HHHHHHHHHhCC---
Confidence 222122 244555555543 477888 3333331 2 221111 133 233333333333
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 248 QNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 248 ~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
+|...++|+||-|..-=-|++++|.+.|+.|.
T Consensus 153 -~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt 184 (283)
T COG0190 153 -DLRGKNVVVVGRSNIVGKPLALLLLNANATVT 184 (283)
T ss_pred -CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE
Confidence 67778899999999999999999999888763
No 87
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=81.89 E-value=1.5 Score=43.99 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.2
Q ss_pred cEEEEccCCCCCChhhHHhhhc-Ccee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK-GYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~-G~KV 279 (393)
=|+|+|.|+||||=|+-.||++ |+.+
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4899999999999999999954 6544
No 88
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=81.70 E-value=3.2 Score=41.50 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=35.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec---------cccCCCCCCccccccCCCcEEE
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV---------PIVMGVELPKSLFQVDPEKVFG 304 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv---------PLVp~v~lP~~L~~i~~~KI~G 304 (393)
|+|+|++.+|||=+++=|| +.|..+.|+ ++.-.=+-|.++-.++ +-.++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~-hhlid 60 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIP-HHLID 60 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCcc-EEEEE
Confidence 7999999999999999999 567777766 5555556666664443 33555
No 89
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=81.67 E-value=1.1 Score=37.80 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KV 279 (393)
|++.|.++||||-++--|| +.|+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~ 27 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPY 27 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce
Confidence 6899999999999999999 556544
No 90
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.46 E-value=2.8 Score=45.20 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=73.5
Q ss_pred EeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHH
Q 016228 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 182 (393)
Q Consensus 103 VSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~ 182 (393)
|=+-+|.|=....||.|-|=|++ +=+..|+|.|.++-++ +|.-.|-+||+||-.-+....+.+
T Consensus 308 VN~k~gltfa~~LRa~LRqDPDv----------------ImVGEIRD~ETAeiav-qAalTGHLVlSTlHtnda~~ai~R 370 (500)
T COG2804 308 VNPKIGLTFARALRAILRQDPDV----------------IMVGEIRDLETAEIAV-QAALTGHLVLSTLHTNDAPGAITR 370 (500)
T ss_pred cccccCCCHHHHHHHHhccCCCe----------------EEEeccCCHHHHHHHH-HHHhcCCeEeeecccCchHHHHHH
Confidence 45678999999999999999983 2233499999988666 456688999999999999999998
Q ss_pred HHHHcCCCEeecchHHHHHHHHHhCC
Q 016228 183 ACELWGIPSTDVLGPITEAIASHLGV 208 (393)
Q Consensus 183 ~~~~~gi~~vDll~p~i~~Le~~lG~ 208 (393)
.+ ++||.-+.+-.++...+++.|=.
T Consensus 371 L~-~mGv~~~~l~s~l~gViaQRLvr 395 (500)
T COG2804 371 LL-EMGVEPYLLASSLLGVIAQRLVR 395 (500)
T ss_pred HH-HcCCCHHHHHHHHHHHHHHHHHh
Confidence 86 69999999999999988887743
No 91
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=81.22 E-value=1.1 Score=35.92 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|+|.++||||-+...+++.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999854
No 92
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=81.10 E-value=8.6 Score=33.97 Aligned_cols=143 Identities=23% Similarity=0.207 Sum_probs=85.2
Q ss_pred HHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhh--hhhCCCCCCCCCCCcCcEEEE
Q 016228 181 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEF--TIKQDDGALPQNLQKADIILS 258 (393)
Q Consensus 181 ~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEF--AlkhDDG~~p~~L~eADIVLv 258 (393)
+..++.+|.+++|+ +-+ +++.+|.... -....-.+++|++.|+--. .+... -=||-.
T Consensus 10 ~~lA~~L~~~fiD~-D~~---i~~~~g~si~-------~i~~~~G~~~fr~~E~~~l~~l~~~~----------~~VIa~ 68 (158)
T PF01202_consen 10 KLLAKRLGRPFIDL-DDE---IEERTGMSIS-------EIFAEEGEEAFRELESEALRELLKEN----------NCVIAC 68 (158)
T ss_dssp HHHHHHHTSEEEEH-HHH---HHHHHTSHHH-------HHHHHHHHHHHHHHHHHHHHHHHCSS----------SEEEEE
T ss_pred HHHHHHhCCCcccc-CHH---HHHHhCCcHH-------HHHHcCChHHHHHHHHHHHHHHhccC----------cEEEeC
Confidence 45677889999996 554 5888886652 2223445899998875332 22211 224444
Q ss_pred ccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHH
Q 016228 259 GVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDY 338 (393)
Q Consensus 259 GVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~ 338 (393)
|-. +.-+|- ++ +.| . ....+|-|..+++.|.+ |+...+. ...+.....
T Consensus 69 GGG-~~~~~~-----~~----------------~~L-~-~~g~vI~L~~~~~~l~~----Rl~~~~~----Rp~l~~~~~ 116 (158)
T PF01202_consen 69 GGG-IVLKEE-----NR----------------ELL-K-ENGLVIYLDADPEELAE----RLRARDN----RPLLKGKME 116 (158)
T ss_dssp -TT-GGGSHH-----HH----------------HHH-H-HHSEEEEEE--HHHHHH----HHHHHCT----SGGTCSHHH
T ss_pred CCC-CcCcHH-----HH----------------HHH-H-hCCEEEEEeCCHHHHHH----HHhCCCC----CCCCCCCCh
Confidence 422 111111 11 111 2 45779999999999876 3332221 122333333
Q ss_pred ---HHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 339 ---VREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 339 ---I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
+.+-+..-..+|.+. ..-+||++.++.||+|+.|++.+
T Consensus 117 ~~~~~~~~~~R~~~Y~~~-a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 117 HEEILELLFEREPLYEQA-ADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSEEEETSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CeEEEeCCCCCHHHHHHHHHHHh
Confidence 444444556788896 89999999999999999999976
No 93
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.03 E-value=6.1 Score=34.12 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecc
Q 016228 163 DGAMLVYTLADPSMAESAKKACELWGIPSTDVL 195 (393)
Q Consensus 163 ~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll 195 (393)
.--+||.+.-+.+.+..+.+.|+++++|+++.-
T Consensus 89 ~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~ 121 (143)
T cd01483 89 GVDLVIDAIDNIAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 346999999999999999999999999999964
No 94
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=81.03 E-value=21 Score=32.45 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=76.5
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC-CEEEEEcCC
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG-AMLVYTLAD 173 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd 173 (393)
..+..||++-.+- +.++.+...+..+||++. +.-+.-++ . +.++.+++++.+.+.+ -+|+--+-.
T Consensus 46 ~~~~~ifllG~~~-~~~~~~~~~l~~~yP~l~------ivg~~~g~------f-~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 46 QRGKRIFLLGGSE-EVLEKAAANLRRRYPGLR------IVGYHHGY------F-DEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred HcCCeEEEEeCCH-HHHHHHHHHHHHHCCCeE------EEEecCCC------C-ChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 4567999998886 456677778999999842 43334444 4 7778889999887766 599999988
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 174 PSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 174 ~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
|.=-..+.+.....+.+++=-.|-.++.++......|
T Consensus 112 PkQE~~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP 148 (172)
T PF03808_consen 112 PKQERWIARHRQRLPAGVIIGVGGAFDFLAGKVKRAP 148 (172)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECchhhhhccCcCccC
Confidence 8777778888788888877778988888876544444
No 95
>PLN02165 adenylate isopentenyltransferase
Probab=80.91 E-value=1.7 Score=44.41 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=49.5
Q ss_pred EEEEccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHh--hcCCCCCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR--SLGFRDEIRS 331 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~--~lGl~~~~~S 331 (393)
|+|+|.++||||=|++-||.. |+ ++|.- +.+ ++.++.=+| |.-|. .-.+..+. -++.-+....
T Consensus 46 ivIiGPTGSGKStLA~~LA~~l~~-----eIIsa----Ds~-QvYkgldIg-Takpt---~~er~gv~Hhli~~~~~~~~ 111 (334)
T PLN02165 46 VVIMGATGSGKSRLSVDLATRFPS-----EIINS----DKM-QVYDGLKIT-TNQIT---IQDRRGVPHHLLGELNPDDG 111 (334)
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----ceecC----Chh-eeECCcccc-cCCCC---HHHHcCCChhhhheeccccc
Confidence 999999999999999999954 54 22221 111 233332222 33232 11111111 1222121123
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEE
Q 016228 332 NYSEMDYVREELEFAGRIFAQNPVWPVI 359 (393)
Q Consensus 332 ~YAs~e~I~~EL~~A~~lf~k~~g~pVI 359 (393)
.|+-.+-++.+....+++..+. +.||+
T Consensus 112 ~~sv~~F~~~a~~~I~~i~~~~-~~PI~ 138 (334)
T PLN02165 112 ELTASEFRSLASLSISEITSRQ-KLPIV 138 (334)
T ss_pred eeeHHHHHHHHHHHHHHHHHCC-CcEEE
Confidence 5666666667777777888886 78876
No 96
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=80.71 E-value=0.31 Score=46.16 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.2
Q ss_pred EEEEccCCCCCChhhHHhhh-c-CceeeeccccC-CCCCCccccccCCCcEEEEecChhHHHH
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-K-GYKVANVPIVM-GVELPKSLFQVDPEKVFGLTINPLVLQS 314 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~-G~KVANvPLVp-~v~lP~~L~~i~~~KI~GLTIdP~rL~~ 314 (393)
+|++||+++|||-++=.+.+ . ++|..||=.++ ++..=+.|-+ +++.+.+|-.+-+++.+
T Consensus 7 vvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve-~rD~~Rklp~e~Q~~lq 68 (189)
T COG2019 7 VVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVE-HRDEMRKLPLENQRELQ 68 (189)
T ss_pred EEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcc-cHHHHhcCCHHHHHHHH
Confidence 79999999999998888774 3 78999999887 4444444433 55667788888777654
No 97
>PRK08356 hypothetical protein; Provisional
Probab=80.45 E-value=1.1 Score=40.94 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
|+|.|.+++|||=+|-||+.+|+.
T Consensus 8 i~~~G~~gsGK~t~a~~l~~~g~~ 31 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFFEEKGFC 31 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCc
Confidence 789999999999999999977774
No 98
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=80.26 E-value=0.92 Score=39.43 Aligned_cols=17 Identities=53% Similarity=0.786 Sum_probs=13.8
Q ss_pred CCcCcEEEEccCCCCCC
Q 016228 250 LQKADIILSGVSRTGKT 266 (393)
Q Consensus 250 L~eADIVLvGVSRTsKT 266 (393)
+.-=-||+-|-||||||
T Consensus 88 ~rp~SivieG~sRTGKT 104 (106)
T PF08283_consen 88 LRPISIVIEGDSRTGKT 104 (106)
T ss_pred CCCCceeEecCCccCcC
Confidence 33335999999999999
No 99
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=80.24 E-value=1.1 Score=39.69 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|.++|.|.||||=++-+|. .+||||+
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 6789999999999999986 5799998
No 100
>PRK00279 adk adenylate kinase; Reviewed
Probab=80.17 E-value=1.3 Score=41.01 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+++|.+++|||-+|-.|| ++|+..-+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 8999999999999999999 679888775
No 101
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=79.62 E-value=1.3 Score=36.89 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
||+|+|.+.+|||-|.-.|++.++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~ 25 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKL 25 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCce
Confidence 7999999999999999999965443
No 102
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.21 E-value=1.3 Score=46.55 Aligned_cols=30 Identities=43% Similarity=0.588 Sum_probs=23.8
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 253 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
.=|+++|+.++|||.++..|| .+|++|+=+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 458899999999999999888 346666533
No 103
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=78.56 E-value=2.8 Score=42.41 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=30.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
-|||.|||-+.+|||=|---|.+.--+|||||.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfT 191 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT 191 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc
Confidence 3999999999999999887887666899999976
No 104
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=78.54 E-value=2.9 Score=34.52 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=61.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhH-HHHHHHHHHhhcCCCCCCCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLV-LQSIRKARARSLGFRDEIRSNY 333 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~r-L~~IR~eRl~~lGl~~~~~S~Y 333 (393)
+++.|.+++|||=+..++++.-...+...- ...++.++..... ...+.++-+..+|... ...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~ 69 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQLNAEAEIKN--------------HPDVIYVNCPSSRTPRDFAQEILEALGLPL---KSR 69 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SST
T ss_pred cEEEcCCCCCHHHHHHHHHHHhHHhhhccC--------------CCcEEEEEeCCCCCHHHHHHHHHHHhCccc---ccc
Confidence 789999999999999999954211111100 4456677777666 7788889999999853 234
Q ss_pred CCHHHHHHHHHHHHHHhhhCC-CCcEEeCCCcc-HHHHHHHHHHHHh
Q 016228 334 SEMDYVREELEFAGRIFAQNP-VWPVIEVTGKA-IEETAAVVLRLYH 378 (393)
Q Consensus 334 As~e~I~~EL~~A~~lf~k~~-g~pVIDVT~kS-IEEtAa~Il~~~~ 378 (393)
.+.+.+.+.+. +.+.++. .+-|||=-+.- =.+....|..+++
T Consensus 70 ~~~~~l~~~~~---~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 70 QTSDELRSLLI---DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp S-HHHHHHHHH---HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred CCHHHHHHHHH---HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 56666654433 3344431 14667655542 2555555555444
No 105
>PRK12338 hypothetical protein; Provisional
Probab=78.11 E-value=14 Score=37.77 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=26.0
Q ss_pred HHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r~ 381 (393)
|--+.-.++ ++|+| ++.++++|.+.|++.+....
T Consensus 173 ~l~~~A~e~-~VpvI--~N~did~Tv~~ile~I~e~s 206 (319)
T PRK12338 173 HLVEQAREH-NVPVI--KNDDIDCTVKKMLSYIREVC 206 (319)
T ss_pred HHHHhHhhC-CCcee--CCCcHHHHHHHHHHHHHhhe
Confidence 334444554 88886 89999999999999997653
No 106
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=77.87 E-value=19 Score=39.13 Aligned_cols=126 Identities=21% Similarity=0.320 Sum_probs=70.3
Q ss_pred HHHHHHHHhhCC-CEEEEEcCC---------HHHHHHHHHHHHHcCCCEeecc-h--------H---HHHHHHHHhC---
Q 016228 153 LMVIIKQAAKDG-AMLVYTLAD---------PSMAESAKKACELWGIPSTDVL-G--------P---ITEAIASHLG--- 207 (393)
Q Consensus 153 l~~ii~~a~~~~-~iV~~Tlvd---------~eLr~~l~~~~~~~gi~~vDll-~--------p---~i~~Le~~lG--- 207 (393)
+.+.|+...+.| .++|.|=-. .++...+...++..|++ +|++ + | ++..+.+.++
T Consensus 202 V~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip-fdviia~~~~~~RKP~pGm~~~a~~~~~~~~ 280 (526)
T TIGR01663 202 IPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP-FQVFIAIGAGFYRKPLTGMWDHLKEEANDGT 280 (526)
T ss_pred HHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc-eEEEEeCCCCCCCCCCHHHHHHHHHhcCccc
Confidence 445567777777 677777533 35667788889999998 4554 2 2 2222223332
Q ss_pred -CCCCCC-----------CCCC------------------CCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCC------
Q 016228 208 -VSPSGL-----------PRGA------------------PGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQ------ 251 (393)
Q Consensus 208 -~~P~~~-----------~~~~------------------pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~------ 251 (393)
+.+... .+.. -|+.....++||--...-+|..- +=+|..+.
T Consensus 281 ~Id~~~S~~VGDaagr~~~g~~ag~~~~D~s~~D~~FA~n~gi~F~tPee~Fl~~~~~~~~~~---~f~p~~~~~~~~~~ 357 (526)
T TIGR01663 281 EIQEDDCFFVGDAAGRPANGKAAGKKKKDFSCADRLFAANLGIPFATPEEFFLGKPAAGFEKP---AFDPRSVQDQGPLC 357 (526)
T ss_pred CCCHHHeEEeCCcccchHHHHhcCCCcCCCChhhHHHHHHcCCcccChHHHhCCCCccccccc---CCCchhhccccccc
Confidence 332100 0001 13333445788877776666321 11111111
Q ss_pred -----------cCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 252 -----------KADIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 252 -----------eADIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
.-=||++|.++||||=++--++ ..||.+.|-
T Consensus 358 ~~~~~~~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~ 400 (526)
T TIGR01663 358 DPDDLALDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNA 400 (526)
T ss_pred CCcccccCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECc
Confidence 1128899999999999988666 567765543
No 107
>PRK00889 adenylylsulfate kinase; Provisional
Probab=77.76 E-value=15 Score=32.52 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+|+|.+++|||-++-.||.
T Consensus 7 i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998884
No 108
>PRK14531 adenylate kinase; Provisional
Probab=77.75 E-value=1.6 Score=39.37 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.4
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceee
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
-|+++|.++||||-+|--|| .+|+..-
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 48999999999999999999 6677643
No 109
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.62 E-value=5.4 Score=35.42 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCEEEEEc--CC-----------HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016228 152 QLMVIIKQAAKDGAMLVYTL--AD-----------PSMAESAKKACELWGIPSTDVLGPITE 200 (393)
Q Consensus 152 ~l~~ii~~a~~~~~iV~~Tl--vd-----------~eLr~~l~~~~~~~gi~~vDll~p~i~ 200 (393)
.+.+++.+++..-.+++.|+ ++ .++.+.+++.|++++++++|+..++..
T Consensus 100 ~~~~ii~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vd~~~~~~~ 161 (193)
T cd01835 100 GLNQLLEEAKRLVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLRRDVPFLDTFTPLLN 161 (193)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeEeCccchhc
Confidence 34455555544445777664 22 257788999999999999999987765
No 110
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=77.23 E-value=11 Score=36.23 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=52.1
Q ss_pred cEEEEEeCChH-HHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTG-eTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+++|+--+..| --|+.+.+.+...+|++ ++..++. .++ .+.+.+++++. -+||.+.-+++.
T Consensus 66 RQ~l~~~~diG~~Ka~~a~~~l~~inp~v--------~i~~~~~-----~i~-~~~~~~~~~~~----DlVvd~~D~~~~ 127 (240)
T TIGR02355 66 RQVLHSDANIGQPKVESAKDALTQINPHI--------AINPINA-----KLD-DAELAALIAEH----DIVVDCTDNVEV 127 (240)
T ss_pred cceeeeHhhCCCcHHHHHHHHHHHHCCCc--------EEEEEec-----cCC-HHHHHHHhhcC----CEEEEcCCCHHH
Confidence 55555434455 34666666666667763 3333332 143 34555555432 499999999999
Q ss_pred HHHHHHHHHHcCCCEee
Q 016228 177 AESAKKACELWGIPSTD 193 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vD 193 (393)
|..+.+.|.++++|+|.
T Consensus 128 r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 128 RNQLNRQCFAAKVPLVS 144 (240)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999999997
No 111
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=76.44 E-value=7.5 Score=35.64 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhhhc
Q 016228 248 QNLQKADII-LSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 248 ~~L~eADIV-LvGVSRTsKTPlSmYLA~~ 275 (393)
.||..-.++ |.|.++||||=+++.+|..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356655554 7899999999999999943
No 112
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=76.43 E-value=1.8 Score=36.36 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|+++|+++||||=++-.|+ ..|+.+-+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 7899999999999999999 66744433
No 113
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=76.40 E-value=5.2 Score=34.49 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=25.7
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccCCCC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 289 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~ 289 (393)
-|+++|-+.+|||-+...|.+..+ ..++|-..+..
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~ 38 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVE 38 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCccccee
Confidence 389999999999999988886554 35555444333
No 114
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=75.93 E-value=11 Score=36.46 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=50.9
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+++++=-+..|. =|+.+++.+....|++ ++..++. .+ +.+.+.+++.+. -+||-+.-+.+.
T Consensus 74 Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v--------~i~~~~~-----~i-~~~~~~~~~~~~----DiVi~~~D~~~~ 135 (245)
T PRK05690 74 RQVLHDDATIGQPKVESARAALARINPHI--------AIETINA-----RL-DDDELAALIAGH----DLVLDCTDNVAT 135 (245)
T ss_pred hhhcCChhhCCChHHHHHHHHHHHHCCCC--------EEEEEec-----cC-CHHHHHHHHhcC----CEEEecCCCHHH
Confidence 445543344563 4555566666666763 3333333 03 345555555432 489999999999
Q ss_pred HHHHHHHHHHcCCCEee
Q 016228 177 AESAKKACELWGIPSTD 193 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vD 193 (393)
|..+.++|.++++|+|.
T Consensus 136 r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 136 RNQLNRACFAAKKPLVS 152 (245)
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 99999999999999997
No 115
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.86 E-value=12 Score=34.98 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecc
Q 016228 150 VEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVL 195 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll 195 (393)
.+.+.++++++ -+||.+.-+.+.|..+.+.|.++++|+|+.-
T Consensus 102 ~~~~~~~~~~~----D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 102 AENLELLINNV----DLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHHhCC----CEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 34455544332 4899999999999999999999999999954
No 116
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=75.85 E-value=6.7 Score=35.09 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=63.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccC--------------------------CCcEEEEecC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVD--------------------------PEKVFGLTIN 308 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~--------------------------~~KI~GLTId 308 (393)
|+|||-+++|||=+-..|...-+.+.+++-..+......++.++ .--++.+..|
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D 82 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYD 82 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEE
Confidence 89999999999999877764444443443332222222111111 1125666665
Q ss_pred hh---HHHHHHHHH--HhhcCCCC-C--CCCCCCCHHHHH-HHHHHHHHHhhhCCCCcEEeC---CCccHHHHHHHHHHH
Q 016228 309 PL---VLQSIRKAR--ARSLGFRD-E--IRSNYSEMDYVR-EELEFAGRIFAQNPVWPVIEV---TGKAIEETAAVVLRL 376 (393)
Q Consensus 309 P~---rL~~IR~eR--l~~lGl~~-~--~~S~YAs~e~I~-~EL~~A~~lf~k~~g~pVIDV---T~kSIEEtAa~Il~~ 376 (393)
.. .+.+++... +..++... + --.+-.|+..-+ ...+.++++.++. ++|++.+ ++..|+|.-..|.+.
T Consensus 83 ~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 83 ITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY-GVPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 333343322 11121100 0 001335542110 1123466666664 8888877 456788888888777
Q ss_pred Hhhc
Q 016228 377 YHDR 380 (393)
Q Consensus 377 ~~~r 380 (393)
+..+
T Consensus 162 ~~~~ 165 (191)
T cd04112 162 LKHR 165 (191)
T ss_pred HHHh
Confidence 6554
No 117
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=75.48 E-value=1.9 Score=38.04 Aligned_cols=29 Identities=45% Similarity=0.557 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
++++|..++|||.++.-|| +.|.||+=+-
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999977666 4588776444
No 118
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=75.39 E-value=2.1 Score=39.31 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
|.|.|.++||||=+|-||+++|+.+-+
T Consensus 5 i~ltG~~gsGKst~~~~l~~~g~~~i~ 31 (194)
T PRK00081 5 IGLTGGIGSGKSTVANLFAELGAPVID 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCEEEE
Confidence 789999999999999999999998743
No 119
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=75.29 E-value=1.9 Score=39.02 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|.|+|.|+||||-++-+|+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999954
No 120
>PRK08118 topology modulation protein; Reviewed
Probab=74.82 E-value=2.1 Score=38.68 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
|+++|.+++|||=++--|+ ..|+.+-
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 8999999999999999999 4565533
No 121
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=74.81 E-value=7.6 Score=40.49 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=36.9
Q ss_pred EEccCCCCCChhhHHhh-h-------cCceeeeccccCCCCCCccccccCCCc--EEEEecChhHHHHHHHHHHhhcCCC
Q 016228 257 LSGVSRTGKTPLSIYLA-Q-------KGYKVANVPIVMGVELPKSLFQVDPEK--VFGLTINPLVLQSIRKARARSLGFR 326 (393)
Q Consensus 257 LvGVSRTsKTPlSmYLA-~-------~G~KVANvPLVp~v~lP~~L~~i~~~K--I~GLTIdP~rL~~IR~eRl~~lGl~ 326 (393)
|-|.|++|||=+++||. . +||+| +.|+| .+-|..+++.+-+-++.=+..|||+
T Consensus 94 ~~gdsg~GKttllL~l~IalaaG~~lfG~~v-----------------~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 94 LYGDSGVGKTTLLLYLCIALAAGKNLFGNKV-----------------KEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred EecCCcccHhHHHHHHHHHHHhhHHHhcccc-----------------cCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 44999999999999986 2 23332 33455 4566677776666566666789996
Q ss_pred C
Q 016228 327 D 327 (393)
Q Consensus 327 ~ 327 (393)
.
T Consensus 157 P 157 (402)
T COG3598 157 P 157 (402)
T ss_pred h
Confidence 4
No 122
>PRK08328 hypothetical protein; Provisional
Probab=74.66 E-value=8.6 Score=36.67 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=51.3
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccC-CCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQF-EHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPS 175 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF-~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~e 175 (393)
+++++--+..|. ....+++..+.++ |+ +++..++. .+ +.+.+.+++++ --+||.++-+.+
T Consensus 69 Rq~l~~~~dvG~~~k~~~a~~~l~~~np~--------v~v~~~~~-----~~-~~~~~~~~l~~----~D~Vid~~d~~~ 130 (231)
T PRK08328 69 RQILHWEEDLGKNPKPLSAKWKLERFNSD--------IKIETFVG-----RL-SEENIDEVLKG----VDVIVDCLDNFE 130 (231)
T ss_pred cccccChhhcCchHHHHHHHHHHHHhCCC--------CEEEEEec-----cC-CHHHHHHHHhc----CCEEEECCCCHH
Confidence 455555555776 3555555555555 54 23333332 03 45556665543 249999999999
Q ss_pred HHHHHHHHHHHcCCCEee
Q 016228 176 MAESAKKACELWGIPSTD 193 (393)
Q Consensus 176 Lr~~l~~~~~~~gi~~vD 193 (393)
.|..+.++|.++|+|+|.
T Consensus 131 ~r~~l~~~~~~~~ip~i~ 148 (231)
T PRK08328 131 TRYLLDDYAHKKGIPLVH 148 (231)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 999999999999999987
No 123
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=74.41 E-value=1.9 Score=34.02 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|+|.++||||=+..-||+.
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999944
No 124
>PRK01184 hypothetical protein; Provisional
Probab=74.35 E-value=2.1 Score=38.23 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
|+|+|.++||||=++-.+.++|+.+..
T Consensus 4 i~l~G~~GsGKsT~a~~~~~~g~~~i~ 30 (184)
T PRK01184 4 IGVVGMPGSGKGEFSKIAREMGIPVVV 30 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCcEEE
Confidence 789999999999999866688887654
No 125
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=74.06 E-value=2.5 Score=38.56 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.7
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
=|++.|.|++|||=+++.|..+|++
T Consensus 16 gvLi~G~sG~GKStlal~L~~~g~~ 40 (149)
T cd01918 16 GVLITGPSGIGKSELALELIKRGHR 40 (149)
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCe
Confidence 3899999999999999999999954
No 126
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=73.88 E-value=15 Score=38.11 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=56.6
Q ss_pred cEEEEE-eCCh-HHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC-CEEEEEcCCH
Q 016228 98 KSIYMV-SDGT-GWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG-AMLVYTLADP 174 (393)
Q Consensus 98 ~~IfiV-SDsT-GeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd~ 174 (393)
+.+|+| ||-. +.++..++|..+.+-.+ .-+..+.+|+ ...++..||+++++.+ -+||.||+=+
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~Gg------evvgE~Y~pl--------g~td~~~ii~~I~~~~Pd~V~stlvG~ 200 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGG------EVVGERYLPL--------GATDFDPIIAEIKAAKPDFVFSTLVGD 200 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-------EEEEEEEE-S---------HHHHHHHHHHHHHHT-SEEEEE--TT
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCC------EEEEEEEecC--------CchhHHHHHHHHHhhCCCEEEEeCcCC
Confidence 777777 8875 89999999999999954 2367888888 6688999999986544 6999999998
Q ss_pred HHHHHHHHHHH
Q 016228 175 SMAESAKKACE 185 (393)
Q Consensus 175 eLr~~l~~~~~ 185 (393)
.-..+.+++.+
T Consensus 201 s~~aF~r~~~~ 211 (363)
T PF13433_consen 201 SNVAFYRAYAA 211 (363)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88888887764
No 127
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=73.69 E-value=2.4 Score=38.23 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANv 282 (393)
|.|.|.++||||=++-+|+++|+.|-+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKELGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEec
Confidence 6799999999999999999999877554
No 128
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=73.66 E-value=24 Score=32.63 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhhhcCc
Q 016228 249 NLQKADII-LSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 249 ~L~eADIV-LvGVSRTsKTPlSmYLA~~G~ 277 (393)
||..-+++ |.|.+++|||=+++.+|..+.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~ 38 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIA 38 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 66666654 578999999999999985443
No 129
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.61 E-value=9.6 Score=39.87 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=51.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHH---HHHHHHhhcCCCCCCC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQS---IRKARARSLGFRDEIR 330 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~---IR~eRl~~lGl~~~~~ 330 (393)
=++++|++++|||=|+.-||..-.. .-...++.=++.|+.|... ++. -.+.+|++. .
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~-----------------~~~g~~V~li~~D~~r~~a~eqL~~-~a~~~~vp~--~ 282 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYAL-----------------LYGKKKVALITLDTYRIGAVEQLKT-YAKIMGIPV--E 282 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----------------hcCCCeEEEEECCccHHHHHHHHHH-HHHHhCCce--E
Confidence 5899999999999999999854210 0123566667888876433 222 123356642 1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016228 331 SNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 367 (393)
Q Consensus 331 S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIE 367 (393)
.. .+.+.+...|.. +... .+-+||+.+++-.
T Consensus 283 ~~-~~~~~l~~~l~~----~~~~-DlVlIDt~G~~~~ 313 (424)
T PRK05703 283 VV-YDPKELAKALEQ----LRDC-DVILIDTAGRSQR 313 (424)
T ss_pred cc-CCHHhHHHHHHH----hCCC-CEEEEeCCCCCCC
Confidence 12 223344444433 3343 6778998877543
No 130
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=73.45 E-value=15 Score=35.58 Aligned_cols=91 Identities=22% Similarity=0.384 Sum_probs=61.7
Q ss_pred HhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 016228 271 YLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF 350 (393)
Q Consensus 271 YLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf 350 (393)
|=|-|| .++=+=..+|..| +.|+-++=|+++|+.+. |+..+|. -.|-..+--+.=+..-.+|+
T Consensus 104 yS~AKg-----l~~dWc~~pd~gL--~KPDlvlfL~v~p~~~a-----~rggfG~-----Erye~v~fqekv~~~~q~l~ 166 (208)
T KOG3327|consen 104 YSAAKG-----LDLDWCKQPDVGL--PKPDLVLFLDVSPEDAA-----RRGGFGE-----ERYETVAFQEKVLVFFQKLL 166 (208)
T ss_pred hhhhcC-----CCcchhhCCccCC--CCCCeEEEEeCCHHHHH-----HhcCcch-----hHHHHHHHHHHHHHHHHHHH
Confidence 555566 3443333444455 45778999999999843 3444442 35666655555566777777
Q ss_pred h-hCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 351 A-QNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 351 ~-k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
+ ..++|.++|.+ +|+|+.-+.|..+++.
T Consensus 167 r~e~~~~~~vDAs-~sve~V~~~V~~i~e~ 195 (208)
T KOG3327|consen 167 RKEDLNWHVVDAS-KSVEKVHQQVRSLVEN 195 (208)
T ss_pred hccCCCeEEEecC-ccHHHHHHHHHHHHHH
Confidence 5 34689999999 9999999999877754
No 131
>PLN02924 thymidylate kinase
Probab=73.20 E-value=12 Score=35.58 Aligned_cols=73 Identities=21% Similarity=0.467 Sum_probs=45.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
|+.+|-|+++|+...+ |.+. + +..|.+.+. .+-+..+..-+.+. .|.+||- ++++||+...|.+.+.
T Consensus 136 PDlvi~Ld~~~~~a~~----R~~~-~-----~~~~E~~~~-~~rv~~~Y~~la~~-~~~vIDa-~~sieeV~~~I~~~I~ 202 (220)
T PLN02924 136 PDLVLYLDISPEEAAE----RGGY-G-----GERYEKLEF-QKKVAKRFQTLRDS-SWKIIDA-SQSIEEVEKKIREVVL 202 (220)
T ss_pred CCEEEEEeCCHHHHHH----Hhcc-C-----ccccccHHH-HHHHHHHHHHHhhc-CEEEECC-CCCHHHHHHHHHHHHH
Confidence 6778999999998876 3211 1 123433322 12222222222333 6889996 5999999999999997
Q ss_pred hccccC
Q 016228 379 DRKHKC 384 (393)
Q Consensus 379 ~r~~~~ 384 (393)
....+|
T Consensus 203 ~~l~~~ 208 (220)
T PLN02924 203 DTVQRC 208 (220)
T ss_pred HHHHhc
Confidence 754443
No 132
>PRK08939 primosomal protein DnaI; Reviewed
Probab=73.05 E-value=3.2 Score=41.47 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=32.8
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceee--ecc
Q 016228 234 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVA--NVP 283 (393)
Q Consensus 234 AIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVA--NvP 283 (393)
|.+|+-.+..|... --++|.|.++||||=|+.-|| ++|++|. ++|
T Consensus 143 ~~~fi~~~~~~~~~-----~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 143 ALDFLEAYPPGEKV-----KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred HHHHHHHhhccCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 46666666554322 248999999999999988887 4688886 555
No 133
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.94 E-value=6.4 Score=36.84 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|.+++|||-+...+++
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 134
>PRK13695 putative NTPase; Provisional
Probab=72.83 E-value=30 Score=30.77 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=23.1
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeec
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ----KGYKVANV 282 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~----~G~KVANv 282 (393)
.|+|+|.+++|||=+.-.+++ .|++++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~ 34 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGF 34 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999998763 37776543
No 135
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=72.77 E-value=13 Score=33.31 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=38.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hCCCCcEEeCCCccHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA-QNPVWPVIEVTGKAIEETAAVV 373 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~-k~~g~pVIDVT~kSIEEtAa~I 373 (393)
.|+.+|-|+++|+...+ |++.-+.. ......+++..+.=-+...++++ .. +|-+||.+.. +||+...|
T Consensus 118 ~PDl~~~Ldv~pe~~~~----R~~~r~~~--~~~~~~~~~~~~~~~~~y~~l~~~~~-~~~iid~~~~-~e~v~~~I 186 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALK----RIAKRGEK--DDEEEEDLEYLRRVREAYLELAKDPN-NWVIIDASRS-IEEVHEQI 186 (186)
T ss_dssp E-SEEEEEECCHHHHHH----HHHHTSST--TTTTTHHHHHHHHHHHHHHHHHHTTT-TEEEEETTS--HHHHHHHH
T ss_pred CCCEEEEEecCHHHHHH----HHHcCCcc--chHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEECCCC-HHHHHhhC
Confidence 56789999999977665 33222210 01122223333322334445564 54 8999997654 99998876
No 136
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=72.62 E-value=2.8 Score=32.37 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQK--GYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~--G~KVA 280 (393)
|++.|.+++|||=++-.|+++ |+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~ 29 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVV 29 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEE
Confidence 678999999999999999976 55544
No 137
>PLN02748 tRNA dimethylallyltransferase
Probab=72.09 E-value=2.4 Score=45.16 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|+|+++||||=|++-|| +.|..+.|.
T Consensus 25 i~i~GptgsGKs~la~~la~~~~~eii~~ 53 (468)
T PLN02748 25 VVVMGPTGSGKSKLAVDLASHFPVEIINA 53 (468)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCeeEEcC
Confidence 8999999999999999999 556555553
No 138
>PRK06547 hypothetical protein; Provisional
Probab=71.86 E-value=2.6 Score=38.58 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEE-ccCCCCCChhhHHhhhc
Q 016228 255 IILS-GVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLv-GVSRTsKTPlSmYLA~~ 275 (393)
+|+| |.|+||||=++-.||+.
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5555 99999999999999954
No 139
>PTZ00088 adenylate kinase 1; Provisional
Probab=71.43 E-value=2.9 Score=40.09 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVA 280 (393)
|||+|.+++|||=++-+||+ +|+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 99999999999999999994 577654
No 140
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=71.23 E-value=18 Score=33.74 Aligned_cols=81 Identities=7% Similarity=0.126 Sum_probs=49.7
Q ss_pred cEEEEEe--CChHHH-HHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCH
Q 016228 98 KSIYMVS--DGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADP 174 (393)
Q Consensus 98 ~~IfiVS--DsTGeT-Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~ 174 (393)
+..|+-. |..|.. |+.+++.+....|++ .++.+.... .+..+...+.+.+. -+|+.+.-+.
T Consensus 61 rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v------~i~~~~~~~------~~~~~~~~~~~~~~----dvVi~~~d~~ 124 (198)
T cd01485 61 SNFFLDAEVSNSGMNRAAASYEFLQELNPNV------KLSIVEEDS------LSNDSNIEEYLQKF----TLVIATEENY 124 (198)
T ss_pred ccEecccchhhcCchHHHHHHHHHHHHCCCC------EEEEEeccc------ccchhhHHHHHhCC----CEEEECCCCH
Confidence 4444443 556644 555555555666763 233332211 11234444444332 4888888889
Q ss_pred HHHHHHHHHHHHcCCCEeec
Q 016228 175 SMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDl 194 (393)
+.+..+.+.|+++++|++..
T Consensus 125 ~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 125 ERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999874
No 141
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=71.17 E-value=3.2 Score=35.65 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVA 280 (393)
|++.|-+++|||.++..||+ +|++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 78999999999999987774 355554
No 142
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=71.06 E-value=2.8 Score=35.78 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=24.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 284 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPL 284 (393)
|||+|||-+.+|||=|--.|.+.-..|.++|.
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~ 32 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPF 32 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCc
Confidence 89999999999999998888743234555553
No 143
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.00 E-value=13 Score=39.51 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+++|++++|||=++.-||.
T Consensus 226 i~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999994
No 144
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=70.87 E-value=3.1 Score=37.76 Aligned_cols=29 Identities=38% Similarity=0.453 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
|.++|-|+||||-+.--|+ .+|+||+-+=
T Consensus 4 i~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK 36 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 6789999999999988777 4589987654
No 145
>PRK08181 transposase; Validated
Probab=70.60 E-value=3.2 Score=40.85 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=36.0
Q ss_pred CCcHHHHhhhhhh-hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 223 PLSEEYFRRIEAI-EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 223 ~ld~~YF~RIeAI-EFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
.++.......... +|. +-| --++|+|.++||||=|+.-+| ++|++|.-++.
T Consensus 87 ~~~~~~~~~L~~~~~~~---~~~--------~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWL---AKG--------ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CCCHHHHHHHHHHHHHH---hcC--------ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 4556666666555 463 111 139999999999999998887 47999876664
No 146
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.36 E-value=2.9 Score=39.02 Aligned_cols=19 Identities=42% Similarity=0.427 Sum_probs=17.2
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
|+|||++++|||=|..=||
T Consensus 4 i~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHH
Confidence 7899999999999888777
No 147
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=70.21 E-value=2.8 Score=41.05 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.0
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeecccc
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV 285 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLV 285 (393)
=+|++|.|+||||=+.++|- +.+.+-+++=|+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 38999999999999999998 444433555444
No 148
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=70.16 E-value=3.1 Score=41.83 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G 276 (393)
|+|+|+..||||-||+-||+++
T Consensus 7 i~I~GpTasGKS~LAl~LA~~~ 28 (300)
T PRK14729 7 VFIFGPTAVGKSNILFHFPKGK 28 (300)
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 8999999999999999999663
No 149
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=70.08 E-value=3.6 Score=38.88 Aligned_cols=27 Identities=37% Similarity=0.568 Sum_probs=25.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|.+=|.++||||-.|-=|| +.||+..|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6788999999999999999 88999988
No 150
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=69.87 E-value=3 Score=38.54 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|+|.|++|||=+|=.||++
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999977
No 151
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=69.65 E-value=20 Score=32.11 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
=|+|.|.|++|||-++-.|+.+
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999888843
No 152
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=69.65 E-value=11 Score=32.84 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCC-CEEEEEcCC---------------HHHHHHHHHHHHHcCCCEeecchHHH
Q 016228 150 VEQLMVIIKQAAKDG-AMLVYTLAD---------------PSMAESAKKACELWGIPSTDVLGPIT 199 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~-~iV~~Tlvd---------------~eLr~~l~~~~~~~gi~~vDll~p~i 199 (393)
.+.+..+|+++...+ .+|+.|+.+ .++.+.+++.|++.|++++|+..++.
T Consensus 91 ~~~~~~~i~~i~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~vd~~~~~~ 156 (185)
T cd01832 91 RADLEEAVRRLRAAGARVVVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGAVHVDLWEHPE 156 (185)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcCCEEEecccCcc
Confidence 456677777776444 466666643 23677889999999999999988754
No 153
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.62 E-value=8.2 Score=33.96 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCC---CEEEEEcC-----------C----HHHHHHHHHHHHHcCCCEeecchHH
Q 016228 151 EQLMVIIKQAAKDG---AMLVYTLA-----------D----PSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 151 e~l~~ii~~a~~~~---~iV~~Tlv-----------d----~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
+.+..+|+.+.+.+ .+|+.|.. + ..+.+.+++.|+++|+++||+..++
T Consensus 93 ~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~ 158 (188)
T cd01827 93 KDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLKLIDLHTPL 158 (188)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCcEEEccccc
Confidence 35556666654322 36666653 1 3567889999999999999998775
No 154
>PRK13974 thymidylate kinase; Provisional
Probab=69.58 E-value=25 Score=32.69 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=46.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
+..+|-|+++|+.+.+-+..|- + +..........+.+..+...|.+.-.|-+||.+ +++||+...|.+.+.
T Consensus 135 pd~~i~ld~~~~~~~~R~~~R~------d--D~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~-~~~eeV~~~I~~~l~ 205 (212)
T PRK13974 135 PDLTFFLEISVEESIRRRKNRK------P--DRIEAEGIEFLERVAEGFALIAEERNWKVISAD-QSIETISNEIKETLL 205 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHhcc------c--CchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCC-CCHHHHHHHHHHHHH
Confidence 5668999999998876544442 1 111111223344455555555554357789974 789999999999887
Q ss_pred h
Q 016228 379 D 379 (393)
Q Consensus 379 ~ 379 (393)
+
T Consensus 206 ~ 206 (212)
T PRK13974 206 N 206 (212)
T ss_pred H
Confidence 5
No 155
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=69.08 E-value=3.2 Score=38.56 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
+.++|.|+||||-|.--|. .+|+||+=|=
T Consensus 9 i~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred EEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 6899999999999754444 6699998664
No 156
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=68.93 E-value=12 Score=33.54 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=40.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVV 373 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~I 373 (393)
++.+|-|.++++.+.+--..|.+ .+ ...+.+.+..+.--+.-++++.+..+|-+||.+ +++||++++|
T Consensus 128 ~d~~i~l~~~~~~~~~R~~~r~~---~~---~~~~~~~~~~~~~~~~y~~~~~~~~~~~~id~~-~~~e~v~~~i 195 (195)
T TIGR00041 128 PDLTIYLDIDPEVALERLRKRGE---LD---REEFEKLDFFEKVRQRYLELADKEKSIHVIDAT-NSVEEVEQDI 195 (195)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCC---cc---hHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeCC-CCHHHHHhhC
Confidence 56799999999988764344421 11 112333333332233344555533478899965 7999999875
No 157
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=68.77 E-value=3.4 Score=43.40 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|.|+++||||=++-.||+
T Consensus 91 iLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 158
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=68.47 E-value=3.7 Score=39.59 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceee
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~-~G~KVA 280 (393)
-.|+|.|.++||||=+..+||+ .|.++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4689999999999999999994 555443
No 159
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.44 E-value=6.2 Score=40.46 Aligned_cols=47 Identities=34% Similarity=0.485 Sum_probs=35.5
Q ss_pred CCcHHHHhhhhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 223 PLSEEYFRRIEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 223 ~ld~~YF~RIeAIEFAlkhDD-----G~-~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
.+++..-+=.++|++-+.|-+ |. .|.+ |+|.|.++||||-++-++|+
T Consensus 135 Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~g-----vLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 135 GLEEQIREVREAVELPLKKPELFEEVGIEPPKG-----VLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCc-----eEEECCCCCChHHHHHHHHH
Confidence 566666666778888777754 32 2332 89999999999999999995
No 160
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=68.35 E-value=22 Score=29.04 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=41.5
Q ss_pred HHHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 156 IIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 156 ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
+++.+++.. -+|+..=+++.+++.+...|++++||++.+. -...|....|.+.
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~--s~~eLG~a~G~~~ 73 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD--SMKKLGKACGIEV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC--CHHHHHHHHCCCc
Confidence 344444333 4677888889999999999999999999987 4588999998765
No 161
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.29 E-value=5.4 Score=40.10 Aligned_cols=47 Identities=34% Similarity=0.480 Sum_probs=32.7
Q ss_pred CCcHHHHhhhhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 223 PLSEEYFRRIEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 223 ~ld~~YF~RIeAIEFAlkhDD-----G~-~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
.+++..-+=.++|++-+.|.+ |. .|++ ++|.|.++||||-+.-.+|+
T Consensus 126 Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~g-----vLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 126 GLEEQIREIREAVELPLKHPELFEEVGIEPPKG-----VLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCce-----EEEECCCCCCHHHHHHHHHH
Confidence 344444445566777777654 21 2332 99999999999999999994
No 162
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=68.25 E-value=17 Score=33.97 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=49.5
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+..|+-.+..|. =|+.+++.+..-.|++ .++.+... +. +...+.+++. -+|+.+..+.+.
T Consensus 63 rqfl~~~~diG~~Ka~a~~~~L~~lNp~v------~i~~~~~~-------~~--~~~~~~~~~~----dvVi~~~~~~~~ 123 (197)
T cd01492 63 AQFLIPAEDLGQNRAEASLERLRALNPRV------KVSVDTDD-------IS--EKPEEFFSQF----DVVVATELSRAE 123 (197)
T ss_pred CCccccHHHcCchHHHHHHHHHHHHCCCC------EEEEEecC-------cc--ccHHHHHhCC----CEEEECCCCHHH
Confidence 344444455565 3666666677777764 34444332 22 2233334332 488888889999
Q ss_pred HHHHHHHHHHcCCCEee
Q 016228 177 AESAKKACELWGIPSTD 193 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vD 193 (393)
+..+.+.|.++|+|++.
T Consensus 124 ~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 124 LVKINELCRKLGVKFYA 140 (197)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999999875
No 163
>PRK03846 adenylylsulfate kinase; Provisional
Probab=67.90 E-value=32 Score=31.40 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
+=|+|+|.|++|||-+.--|+.+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999988854
No 164
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=67.86 E-value=2.5 Score=39.44 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhhh----cCceeeeccc
Q 016228 248 QNLQKADII-LSGVSRTGKTPLSIYLAQ----KGYKVANVPI 284 (393)
Q Consensus 248 ~~L~eADIV-LvGVSRTsKTPlSmYLA~----~G~KVANvPL 284 (393)
.|+..=-++ +.|.++||||.++..++. .|.||.-+-+
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 455554444 559999999999999863 4777765554
No 165
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=67.61 E-value=3.5 Score=37.56 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK----GYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~----G~KVANvP 283 (393)
|.+.|.|+||||=+|--|+.. |.+++-+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 578999999999999999844 66666543
No 166
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=67.32 E-value=4.3 Score=34.82 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|.|.+++|||=++-.|++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999999964
No 167
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=67.26 E-value=19 Score=31.38 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHH
Q 016228 175 SMAESAKKACELWGIPSTDVLGPITE 200 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDll~p~i~ 200 (393)
.+.+.+++.|+++|++++|+...+..
T Consensus 143 ~~~~~~~~~a~~~~~~~iD~~~~~~~ 168 (199)
T cd01838 143 QYAEACVEVAEELGVPVIDLWTAMQE 168 (199)
T ss_pred HHHHHHHHHHHHhCCcEEEHHHHHHh
Confidence 44557888999999999999876654
No 168
>PRK07714 hypothetical protein; Provisional
Probab=67.12 E-value=28 Score=29.17 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=37.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
-+|+..=+.++.++.+...|+.++||++.++ --..|...+|.++
T Consensus 37 lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~--sk~eLG~a~Gk~~ 80 (100)
T PRK07714 37 LVLLSEDASVNTTKKITDKCTYYNVPMRKVE--NRQQLGHAIGKDE 80 (100)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcCCCEEEeC--CHHHHHHHhCCCc
Confidence 3556677789999999999999999999874 4588999999886
No 169
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=66.82 E-value=30 Score=33.42 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=55.2
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+++|...+..|. =++.+++.+..-+|++. ++.+.- + ++ .+.+.+++. .+--+||.++-+.+.
T Consensus 53 Rq~~~~~~diG~~Kae~~~~~l~~inP~~~------V~~~~~-~------i~-~~~~~~l~~---~~~D~VvdaiD~~~~ 115 (231)
T cd00755 53 RQIHALLSTVGKPKVEVMAERIRDINPECE------VDAVEE-F------LT-PDNSEDLLG---GDPDFVVDAIDSIRA 115 (231)
T ss_pred chhCcChhhCCCcHHHHHHHHHHHHCCCcE------EEEeee-e------cC-HhHHHHHhc---CCCCEEEEcCCCHHH
Confidence 455554455664 56677777777777642 333322 2 33 344454442 123599999999999
Q ss_pred HHHHHHHHHHcCCCEeecch
Q 016228 177 AESAKKACELWGIPSTDVLG 196 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vDll~ 196 (393)
+..|.++|.++++|+|..+|
T Consensus 116 k~~L~~~c~~~~ip~I~s~g 135 (231)
T cd00755 116 KVALIAYCRKRKIPVISSMG 135 (231)
T ss_pred HHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999865
No 170
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=66.75 E-value=6.1 Score=37.48 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=32.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSL 294 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L 294 (393)
|-|+|+|-+.+|||-|--.|.+...+++|+|..--.+.|..+
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~ 42 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVL 42 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEE
Confidence 568999999999999988888666789999976533334433
No 171
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=66.68 E-value=67 Score=27.88 Aligned_cols=90 Identities=9% Similarity=-0.075 Sum_probs=55.9
Q ss_pred cEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCC----
Q 016228 98 KSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLAD---- 173 (393)
Q Consensus 98 ~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd---- 173 (393)
..|--.+..++.++..+.+..+.+-... ++-+..+ =.+. ..+.++++++++.+.....+|+.|.-.
T Consensus 24 ~~i~a~~g~~~~~~~~~l~~~~~~~~~~------d~vvi~l--GtNd--~~~~~nl~~ii~~~~~~~~ivlv~~~~~~~~ 93 (150)
T cd01840 24 IQIDAKVGRQMSEAPDLIRQLKDSGKLR------KTVVIGL--GTNG--PFTKDQLDELLDALGPDRQVYLVNPHVPRPW 93 (150)
T ss_pred CEEEeeecccHHHHHHHHHHHHHcCCCC------CeEEEEe--cCCC--CCCHHHHHHHHHHcCCCCEEEEEECCCCcch
Confidence 3444455555667777777666543111 1112111 1222 236789999998885434566666654
Q ss_pred -HHHHHHHHHHHHHc-CCCEeecchH
Q 016228 174 -PSMAESAKKACELW-GIPSTDVLGP 197 (393)
Q Consensus 174 -~eLr~~l~~~~~~~-gi~~vDll~p 197 (393)
.++.+.+++.|+++ +++++|+...
T Consensus 94 ~~~~n~~~~~~a~~~~~v~~id~~~~ 119 (150)
T cd01840 94 EPDVNAYLLDAAKKYKNVTIIDWYKA 119 (150)
T ss_pred HHHHHHHHHHHHHHCCCcEEecHHHH
Confidence 47788999999999 9999997654
No 172
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=66.62 E-value=3.4 Score=40.48 Aligned_cols=66 Identities=26% Similarity=0.281 Sum_probs=35.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc---------ccCCCCCCccccccCC------CcEEEEecChhHHHHHHHH
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVP---------IVMGVELPKSLFQVDP------EKVFGLTINPLVLQSIRKA 318 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvP---------LVp~v~lP~~L~~i~~------~KI~GLTIdP~rL~~IR~e 318 (393)
++|+|++.||||=+++=|| +.|.-|-+.= ..-+-|.|.+|..+.+ .-.=|- |+++..++-=..
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li~ 82 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLIS 82 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHHH
Confidence 5799999999999999999 5677776532 2226677787754432 111132 666666654444
Q ss_pred HHh
Q 016228 319 RAR 321 (393)
Q Consensus 319 Rl~ 321 (393)
++.
T Consensus 83 ~v~ 85 (233)
T PF01745_consen 83 EVN 85 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 173
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=66.26 E-value=22 Score=36.21 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=27.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDl 194 (393)
-+||.+.-+.+.|..+.+.|.++++|+|..
T Consensus 227 D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 227 DVVVDGADNFPTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred CEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 499999999999999999999999999875
No 174
>PRK07933 thymidylate kinase; Validated
Probab=66.07 E-value=34 Score=32.09 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=41.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC----HHHHHHHHHHHHHHhhhC--CCCcEEeCCCccHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE----MDYVREELEFAGRIFAQN--PVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs----~e~I~~EL~~A~~lf~k~--~g~pVIDVT~kSIEEtAa~ 372 (393)
|+.+|-|+++|+...+-.++|-.. .... ....|-. +++|++... +++++. ..|-+||- ++++||++..
T Consensus 133 PDl~i~Ldv~~e~a~~Ri~~R~~~-~~~~-~~d~~E~~~~f~~~v~~~Y~---~~~~~~~~~~~~~ida-~~~~e~v~~~ 206 (213)
T PRK07933 133 PDLQVLLDVPVELAAERARRRAAQ-DADR-ARDAYERDDGLQQRTGAVYA---ELAAQGWGGPWLVVDP-DVDPAALAAR 206 (213)
T ss_pred CCEEEEecCCHHHHHHHHHhhccc-cCCc-ccccccccHHHHHHHHHHHH---HHHHhcCCCCeEEeCC-CCCHHHHHHH
Confidence 567899999999877644445211 0000 0012222 233443322 222221 16888996 7999999999
Q ss_pred HHHHH
Q 016228 373 VLRLY 377 (393)
Q Consensus 373 Il~~~ 377 (393)
|.+.+
T Consensus 207 i~~~~ 211 (213)
T PRK07933 207 LAAAL 211 (213)
T ss_pred HHHHh
Confidence 98865
No 175
>PRK07773 replicative DNA helicase; Validated
Probab=65.62 E-value=43 Score=38.29 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=61.6
Q ss_pred CCCCcCc-EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCC
Q 016228 248 QNLQKAD-IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFR 326 (393)
Q Consensus 248 ~~L~eAD-IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~ 326 (393)
.||..-| |||.|-+++|||=+++-+|..+-+-.+ .+--+|.|.++++.|.+ |+.+....
T Consensus 212 ~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~----------------~~V~~fSlEms~~ql~~----R~~s~~~~ 271 (886)
T PRK07773 212 NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHR----------------LAVAIFSLEMSKEQLVM----RLLSAEAK 271 (886)
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcC----------------CeEEEEecCCCHHHHHH----HHHHHhcC
Confidence 5788888 556788999999999999843221111 11236778888887753 55443221
Q ss_pred CC----CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 327 DE----IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 327 ~~----~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
-+ ...... .+.- ..+..|-..+.+. .+-+-|..+.+++|+.+.|..+..+
T Consensus 272 i~~~~i~~g~l~-~~~~-~~~~~a~~~l~~~-~i~i~d~~~~~i~~i~~~~r~~~~~ 325 (886)
T PRK07773 272 IKLSDMRSGRMS-DDDW-TRLARAMGEISEA-PIFIDDTPNLTVMEIRAKARRLRQE 325 (886)
T ss_pred CCHHHHhcCCCC-HHHH-HHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 000111 1111 1233333334443 4556677888899988888776543
No 176
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=65.56 E-value=3.5 Score=37.56 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+|.|.++||||-+..++++.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999954
No 177
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.55 E-value=4 Score=37.42 Aligned_cols=51 Identities=33% Similarity=0.612 Sum_probs=29.6
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 223 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 223 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
..+....+.+.+.+|. +.|+ -++|.|.++||||=|+.=+| ++|++|.=+..
T Consensus 29 ~~~~~~~~~l~~~~~~---~~~~--------~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 29 GIDKAQIAQLAALEFI---ENGE--------NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp -----HHHHHHHH-S----SC----------EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred hHHHHHHHHHhcCCCc---ccCe--------EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 3445566666666664 1222 29999999999999988776 47888865543
No 178
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=65.52 E-value=4.5 Score=33.31 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
||+|+|.+++|||-|--.|...-+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC
Confidence 699999999999999888875433
No 179
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=65.34 E-value=4.7 Score=37.52 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
|.|.|.++||||=++=+|+.+|++|-+
T Consensus 8 igitG~igsGKSt~~~~l~~~g~~v~d 34 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAEMGCELFE 34 (208)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEe
Confidence 678999999999999999999988865
No 180
>PRK06683 hypothetical protein; Provisional
Probab=65.24 E-value=31 Score=28.40 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=37.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 209 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~ 209 (393)
-+++..=+++.+++-+...|+.++||++.+. ....|....|.+
T Consensus 30 lViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~--t~~eLG~A~G~~ 72 (82)
T PRK06683 30 EVVIAEDADMRLTHVIIRTALQHNIPITKVE--SVRKLGKVAGIQ 72 (82)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCEEEEC--CHHHHHHHhCCc
Confidence 3666777889999999999999999999877 668888888875
No 181
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=65.20 E-value=15 Score=31.48 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.5
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
-|+++|-+++|||-+-..|.+..+..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~ 29 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTE 29 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 48999999999999998888654544
No 182
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=65.20 E-value=31 Score=30.36 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..-|+|+|.+++|||-|-..|.+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999998888743
No 183
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=65.03 E-value=29 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=22.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
.-|+++|-+.+|||=+-..+.+. .-+.+++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~-~~~~~~~ 31 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG-IFVEKYD 31 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC-CCCcccC
Confidence 45899999999999987777743 3344554
No 184
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=65.02 E-value=4.6 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
+=|+|+|.+++|||-+--.|..........|.+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~ 35 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTT 35 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCce
Confidence 3489999999999999888885546666655444
No 185
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=64.92 E-value=4.8 Score=38.68 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|||+|+++||||=++-.||++
T Consensus 5 iil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678899999999999999954
No 186
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.90 E-value=12 Score=37.18 Aligned_cols=94 Identities=17% Similarity=0.285 Sum_probs=59.7
Q ss_pred HHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhh
Q 016228 156 IIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAI 235 (393)
Q Consensus 156 ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAI 235 (393)
.++. ..++.+||..+.++.+. +.|+++||.++|.+.- +.+. . ...+...+. |+
T Consensus 87 ~l~~-l~~~~~v~~G~~~~~~~----~~~~~~gi~~~~~~~~--~~~~----~------------~ns~~~aeg----av 139 (296)
T PRK08306 87 LLEL-TPEHCTIFSGIANPYLK----ELAKETNRKLVELFER--DDVA----I------------LNSIPTAEG----AI 139 (296)
T ss_pred HHHh-cCCCCEEEEecCCHHHH----HHHHHCCCeEEEEecc--chhh----h------------hccHhHHHH----HH
Confidence 3444 34567788899999855 5678999999997754 1110 0 112222333 34
Q ss_pred hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeee
Q 016228 236 EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 236 EFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
..++++- +..+..+-+.++|..++|++ +...|..+|.+|.=
T Consensus 140 ~~a~~~~----~~~l~g~kvlViG~G~iG~~-~a~~L~~~Ga~V~v 180 (296)
T PRK08306 140 MMAIEHT----PITIHGSNVLVLGFGRTGMT-LARTLKALGANVTV 180 (296)
T ss_pred HHHHHhC----CCCCCCCEEEEECCcHHHHH-HHHHHHHCCCEEEE
Confidence 3444332 24566788999999999965 77778888976543
No 187
>PRK14526 adenylate kinase; Provisional
Probab=64.86 E-value=4.1 Score=38.48 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
|+|+|.++||||-+|-.|| ..|+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~ 27 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY 27 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8999999999999999999 56765
No 188
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=64.61 E-value=50 Score=30.70 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=64.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC-CEEEEEcCC
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG-AMLVYTLAD 173 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd 173 (393)
..+..||++ -++=++++.+++.+..+||++. +.-+ ..+ .+ .++-+++++++.+.+ -+|+--|-.
T Consensus 46 ~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l~------i~g~-~g~------f~-~~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 46 KEKLPIFLY-GGKPDVLQQLKVKLIKEYPKLK------IVGA-FGP------LE-PEERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HcCCeEEEE-CCCHHHHHHHHHHHHHHCCCCE------EEEE-CCC------CC-hHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 455799999 5555688999999999999853 3333 555 54 344466888887666 588888888
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHHHHHHHHH
Q 016228 174 PSMAESAKKACELWGIPSTDVLGPITEAIASH 205 (393)
Q Consensus 174 ~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~ 205 (393)
|.=-..+.+.....+..++=-.|-.++.++..
T Consensus 111 PkQE~~~~~~~~~~~~~v~~gvGg~fd~~aG~ 142 (177)
T TIGR00696 111 PKQEIWMRNHRHLKPDAVMIGVGGSFDVFSGL 142 (177)
T ss_pred cHhHHHHHHhHHhCCCcEEEEeceeeeecccC
Confidence 87656666555554444433356666666644
No 189
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.52 E-value=19 Score=37.39 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~ 274 (393)
--++|+|++++|||=|..=||.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998884
No 190
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=64.10 E-value=4.8 Score=42.29 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=38.7
Q ss_pred hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccccC---CCCCCcc
Q 016228 236 EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPIVM---GVELPKS 293 (393)
Q Consensus 236 EFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~----~G~KVANvPLVp---~v~lP~~ 293 (393)
+++..+|- ++...-...=+.|||..-||||=|+-|||| +|+||+=+=+=+ ++-+|..
T Consensus 58 ~i~~~~~~-~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ 121 (398)
T COG1341 58 EIADTWES-KSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGF 121 (398)
T ss_pred HHhhcccc-cchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCce
Confidence 44454444 333334456689999999999999999995 488988665443 4555544
No 191
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=63.86 E-value=4.8 Score=39.48 Aligned_cols=21 Identities=38% Similarity=0.333 Sum_probs=18.5
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-|.|+|++++|||=|+.-||.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988873
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=63.75 E-value=5 Score=38.93 Aligned_cols=48 Identities=31% Similarity=0.520 Sum_probs=33.1
Q ss_pred CcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 224 LSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
++..-...+.+++| +.. | --++|+|.++||||=|+.-|+ +.|++|.=+
T Consensus 85 ~~~~~i~~L~~~~~-i~~--~--------~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 85 APQKQLQSLRSLSF-IER--N--------ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCHHHHHHHhcCCc-hhc--C--------CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 44445555666666 332 1 248999999999999988885 468887643
No 193
>PRK10867 signal recognition particle protein; Provisional
Probab=63.68 E-value=4.8 Score=42.43 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=24.8
Q ss_pred CcEEEEccCCCCCChhhHHhh----hc-Cceeeeccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLA----QK-GYKVANVPI 284 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA----~~-G~KVANvPL 284 (393)
.=|+++|+.++|||=++..|| .+ |+||+-+-.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 458999999999999777776 34 888775543
No 194
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=63.64 E-value=5.2 Score=39.17 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhh
Q 016228 249 NLQKADI-ILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eADI-VLvGVSRTsKTPlSmYLA 273 (393)
|+..-.| .+.|.++||||-+|+.||
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~ 116 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLA 116 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5555566 488999999999999998
No 195
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=63.41 E-value=16 Score=30.63 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
|+++|.+.+|||=+...|.+.-+
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~ 25 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRF 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999998888875543
No 196
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.38 E-value=93 Score=31.39 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=84.1
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-. +...++.-...+..+ ++.++.+.||- -.|++++.+.|+++.++. +|+++ =
T Consensus 33 ~P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~s~~el~~~I~~lN~d~~V~GIlvqlP 100 (285)
T PRK10792 33 APGLAVVLVGSDPA--SQVYVASKRKACEEV----GFVSRSYDLPE------TTSEAELLALIDELNADPTIDGILVQLP 100 (285)
T ss_pred CceEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34577888887664 445555555555432 35677888876 778899999998875443 66665 3
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-.+.+....-+++ ||-|.|. +..|. .|.+. -.| ..|- .=++.++|. | -
T Consensus 101 LP~~~~~~~i~~~I~p~KD---VDGl~~~n~g~l~--~~~~~-~~P-cTp~----------av~~ll~~~-----~---i 155 (285)
T PRK10792 101 LPAHIDNVKVLERIHPDKD---VDGFHPYNVGRLA--QRIPL-LRP-CTPR----------GIMTLLERY-----G---I 155 (285)
T ss_pred CCCCCCHHHHHhccCcccc---cCccChhhHhHHh--CCCCC-CCC-CCHH----------HHHHHHHHc-----C---C
Confidence 321 122333444433433 3656654 22221 23211 101 1221 112222221 1 1
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
+|...++++||=|++-=-||+++|.++|-.|
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atV 186 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTV 186 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeE
Confidence 6777899999999955569999999988544
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.37 E-value=4.8 Score=41.82 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~ 274 (393)
--|+++|+.++|||=|+.-||.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999994
No 198
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.06 E-value=1.2e+02 Score=30.51 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=85.4
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-+ +...++.-...+..+ ++.++.+.||- -.+++++.+.|+++.++. +|+++ =
T Consensus 32 ~P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIlvq~P 99 (284)
T PRK14190 32 VPGLAVILVGDDPA--SHSYVRGKKKAAEKV----GIYSELYEFPA------DITEEELLALIDRLNADPRINGILVQLP 99 (284)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 44567777876654 344444444444332 35688888887 778889999998885543 55554 4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-.+.+....-+++ ||-|.|. +..| +.|.+. -.| ..| .|+=.-++|= |.
T Consensus 100 Lp~~i~~~~i~~~I~p~KD---VDGl~~~n~g~l--~~~~~~-~~P-cTp--------------~av~~lL~~~-~i--- 154 (284)
T PRK14190 100 LPKHIDEKAVIERISPEKD---VDGFHPINVGRM--MLGQDT-FLP-CTP--------------HGILELLKEY-NI--- 154 (284)
T ss_pred CCCCCCHHHHHhcCCcccc---ccccCHhhHHHH--hcCCCC-CCC-CCH--------------HHHHHHHHHc-CC---
Confidence 431 122223333333333 3666664 2222 234321 111 122 1222222221 11
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
+|...++++||=|.+==-|++++|.++|..|-
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt 186 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVT 186 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 57778999999999999999999999986665
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=63.05 E-value=5.6 Score=40.54 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=21.0
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeee
Q 016228 254 DIILSGVSRTGKTPLSIYLA----QKGYKVAN 281 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA----~~G~KVAN 281 (393)
=|+++|+.++|||=++--|| ++|++|+-
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 38899999999999665555 45666554
No 200
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=63.03 E-value=16 Score=33.05 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhCC-CEEEEEcC---------CHHHHHHHHHHHHHcCCCEeecchH
Q 016228 150 VEQLMVIIKQAAKDG-AMLVYTLA---------DPSMAESAKKACELWGIPSTDVLGP 197 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~-~iV~~Tlv---------d~eLr~~l~~~~~~~gi~~vDll~p 197 (393)
.+.++.+++++++.+ .+|+.++. ...+.+.+++.|++++++++|++.+
T Consensus 94 ~~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~~~~~~~~~~~~a~~~~v~~id~~~~ 151 (191)
T PRK10528 94 EQTLRQIIQDVKAANAQPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDIPLLPFFME 151 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCcccHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 356677777776555 33443331 1356778999999999999997643
No 201
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=62.94 E-value=23 Score=31.02 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhCCC-EEEEEcC-----------------CHHHHHHHHHHHHHcCCCEeecchHHHHH
Q 016228 150 VEQLMVIIKQAAKDGA-MLVYTLA-----------------DPSMAESAKKACELWGIPSTDVLGPITEA 201 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~~-iV~~Tlv-----------------d~eLr~~l~~~~~~~gi~~vDll~p~i~~ 201 (393)
.+.++++++.+++.++ +|+.|.. -..+.+.+++.|++.|++++|+.+.+.+.
T Consensus 82 ~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~~~~~~~~ 151 (183)
T cd04501 82 KDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLLFLDFYSPLLDE 151 (183)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCCEEechhhhhcc
Confidence 3455666777766664 4555421 13667789999999999999998876543
No 202
>PRK13976 thymidylate kinase; Provisional
Probab=62.84 E-value=19 Score=33.94 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCC-CCcEEeCCC--cc---HHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNP-VWPVIEVTG--KA---IEETAAV 372 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~-g~pVIDVT~--kS---IEEtAa~ 372 (393)
|+.+|-|+++|+...+-.+.| ++.. .+. .-+++|++.-. +++++.. +|.+||-+. ++ +||+.+.
T Consensus 125 PDl~i~Ldv~~e~a~~Ri~~~----~~e~-~~~--~~l~~v~~~Y~---~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~ 194 (209)
T PRK13976 125 PDITFVLDIDIELSLSRADKN----GYEF-MDL--EFYDKVRKGFR---EIVIKNPHRCHVITCIDAKDNIEDINSVHLE 194 (209)
T ss_pred CCEEEEEeCCHHHHHHHhccc----chhc-ccH--HHHHHHHHHHH---HHHHhCCCCeEEEECCCCccCcCCHHHHHHH
Confidence 467899999999776522111 1100 001 11234444422 2333321 588999853 45 9999999
Q ss_pred HHHHHhhc
Q 016228 373 VLRLYHDR 380 (393)
Q Consensus 373 Il~~~~~r 380 (393)
|++.+...
T Consensus 195 i~~~i~~~ 202 (209)
T PRK13976 195 IVKLLHAV 202 (209)
T ss_pred HHHHHHHH
Confidence 99988654
No 203
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=62.53 E-value=3.6 Score=40.39 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCCChhh----HHhhhcCce
Q 016228 253 ADIILSGVSRTGKTPLS----IYLAQKGYK 278 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlS----mYLA~~G~K 278 (393)
..++|.|.++||||-+. .+|...|+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYV 88 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 46999999999999999 455556664
No 204
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=62.07 E-value=5.1 Score=38.79 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
|-++|.|++|||=++--|+ .+||||+=+
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 5689999999999988555 679999987
No 205
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=61.98 E-value=5.4 Score=39.11 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|+++|+.++|||=|+.=|| ++|+||+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 7789999999999887776 4566664
No 206
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=61.62 E-value=4.7 Score=32.65 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
|+++|-+++|||-|.-+|++.-+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 799999999999999999966544
No 207
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=61.44 E-value=4.9 Score=37.03 Aligned_cols=21 Identities=33% Similarity=0.262 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
+.|.|.|+||||-+++.||..
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999843
No 208
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=61.43 E-value=6 Score=35.15 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|.++|.+++|||.++.-|+ ..|.||.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 6789999999999887766 3566653
No 209
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=61.42 E-value=41 Score=27.80 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=40.1
Q ss_pred HHHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016228 156 IIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 209 (393)
Q Consensus 156 ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~ 209 (393)
+++.++... -+|+..=+++++++.+...|+.++||++..+ -...|...+|.+
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~--t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID--TMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC--CHHHHHHHHCCc
Confidence 344444333 3666777889999999999999999997554 568899999987
No 210
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=61.00 E-value=3.8 Score=35.99 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVA 280 (393)
++|.|.++||||=+++-++. .|.+|.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~ 31 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGL 31 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 68899999999999987664 455553
No 211
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=60.68 E-value=4.1 Score=37.64 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=25.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
|+..-. ++|.|.++||||-+++.+| ++|.+|.-+-+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 444444 5668999999999998655 45666655544
No 212
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=60.47 E-value=7.2 Score=35.44 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=27.6
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 248 QNLQKADII-LSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 248 ~~L~eADIV-LvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
.|+..-.++ |.|.++||||=+|+-+| ..|.+|+-+-.
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 355555554 67999999999999988 34677776655
No 213
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=60.46 E-value=6.7 Score=36.50 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANv 282 (393)
|.|.|-++||||=.|-+|+.+|+.+-|-
T Consensus 4 igitG~igsGKst~~~~l~~~g~~vid~ 31 (200)
T PRK14734 4 IGLTGGIGSGKSTVADLLSSEGFLIVDA 31 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEeC
Confidence 7899999999999999999999988775
No 214
>PRK08727 hypothetical protein; Validated
Probab=60.44 E-value=5.9 Score=37.49 Aligned_cols=31 Identities=42% Similarity=0.592 Sum_probs=25.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPLV 285 (393)
++|.|.|+||||=|.-.++ ++|++|.=+|+.
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 9999999999999888874 568888777753
No 215
>PRK05541 adenylylsulfate kinase; Provisional
Probab=60.34 E-value=4.8 Score=35.75 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=20.9
Q ss_pred CCcEEeCCC-ccHHHHHHHHHHHHhhc
Q 016228 355 VWPVIEVTG-KAIEETAAVVLRLYHDR 380 (393)
Q Consensus 355 g~pVIDVT~-kSIEEtAa~Il~~~~~r 380 (393)
.--+||+.+ ++.||.+..|++.+..+
T Consensus 147 Ad~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 147 ADLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred CCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 456889876 69999999999988554
No 216
>PRK13973 thymidylate kinase; Provisional
Probab=60.20 E-value=29 Score=32.25 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=42.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhC-CCCcEEeCCCccHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-----MDYVREELEFAGRIFAQN-PVWPVIEVTGKAIEETAA 371 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs-----~e~I~~EL~~A~~lf~k~-~g~pVIDVT~kSIEEtAa 371 (393)
.++.+|-|+++|+.+.+-=.+|.. .+ ....|-. .++++++-. ++.++. ..|-+||- ++++||+.+
T Consensus 128 ~PD~vi~Ldv~~e~~~~Rl~~R~~----~~-~~~~~e~~~~~~~~~~~~~y~---~l~~~~~~~~~~Ida-~~~~e~V~~ 198 (213)
T PRK13973 128 MPDLTLILDIPAEVGLERAAKRRG----SD-TPDRFEKEDLAFHEKRREAFL---QIAAQEPERCVVIDA-TASPEAVAA 198 (213)
T ss_pred CCCEEEEEeCCHHHHHHHHHhccC----CC-ccCchhhchHHHHHHHHHHHH---HHHHhCCCcEEEEcC-CCCHHHHHH
Confidence 467799999999987652233321 10 0112221 123333322 222211 14788995 689999999
Q ss_pred HHHHHHhhc
Q 016228 372 VVLRLYHDR 380 (393)
Q Consensus 372 ~Il~~~~~r 380 (393)
.|.+++...
T Consensus 199 ~I~~~i~~~ 207 (213)
T PRK13973 199 EIWAAVDQR 207 (213)
T ss_pred HHHHHHHHH
Confidence 999988653
No 217
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=60.08 E-value=39 Score=30.17 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.-|+++|.+.+|||=+...|...
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999998887743
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=60.04 E-value=7.3 Score=35.97 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=27.8
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 248 QNLQKADI-ILSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 248 ~~L~eADI-VLvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
.|+..-.+ .|.|.++||||-+++-|| ..|.+|.-+-.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 46666665 577999999999999999 35677765543
No 219
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.99 E-value=22 Score=30.78 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhh--CC-CEEEEEcCC------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016228 151 EQLMVIIKQAAK--DG-AMLVYTLAD------------PSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 151 e~l~~ii~~a~~--~~-~iV~~Tlvd------------~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
+.+.++|+.+.+ .+ .+|+.|+.. .++.+.+++.|++.|++++|+...+
T Consensus 72 ~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~~~ 134 (169)
T cd01828 72 ANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQEGVTFLDLWAVF 134 (169)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCEEEechhhh
Confidence 455666666654 33 466655521 3477889999999999999998655
No 220
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=59.88 E-value=22 Score=36.17 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHhhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEeec---chHHHHHHHHHhCC--CCCCCCCCCCCCCC
Q 016228 149 DVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPSTDV---LGPITEAIASHLGV--SPSGLPRGAPGRNF 222 (393)
Q Consensus 149 t~e~l~~ii~~a~~~~-~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDl---l~p~i~~Le~~lG~--~P~~~~~~~pG~~~ 222 (393)
+.++..+.+++.-+.+ |.|+.|= +-+.-..+.+.|+++++|.+=- -.-++..|..+|.. +|.. ..+|..
T Consensus 67 ~~~~r~~~~~~l~~~~~P~iIvt~-~~~~p~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~la~~~---~iHg~~- 141 (308)
T PRK05428 67 SEEERKERLKKLFSLEPPCIIVTR-GLEPPPELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKLAPRT---SVHGVL- 141 (308)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEC-cCCCCHHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHhhhcc---eeeeEE-
Confidence 5566677777775444 5555553 3333455778999999998732 23334444444443 2211 134422
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCce
Q 016228 223 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 223 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
. ++..-=|+|.|.|+.||+=|++-|-.+|++
T Consensus 142 ----------------------v---~V~G~GvLi~G~SG~GKSelALeLi~rGh~ 172 (308)
T PRK05428 142 ----------------------V---DIYGIGVLITGESGIGKSETALELIKRGHR 172 (308)
T ss_pred ----------------------E---EECCEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence 1 122234899999999999999999999976
No 221
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.81 E-value=6 Score=41.31 Aligned_cols=43 Identities=35% Similarity=0.415 Sum_probs=28.7
Q ss_pred hhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHhhhc-Cce
Q 016228 233 EAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYLAQK-GYK 278 (393)
Q Consensus 233 eAIEFAlkhDDG~~p~~L~eAD-IVLvGVSRTsKTPlSmYLA~~-G~K 278 (393)
.|.-|+=++=+ +.-+.--- |.|=|+.+||||-||-=|||| .++
T Consensus 160 s~l~fsek~vn---tnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 160 SALLFSEKKVN---TNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred HHHHHHhcCCC---CceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 44555555544 44333333 556699999999999999976 555
No 222
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=59.62 E-value=5 Score=37.64 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.0
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.|+|+|.|.+|||=|-..|.+.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHS
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 223
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=59.49 E-value=4.3 Score=41.63 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.6
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+||||+|+||||=|-=-+|
T Consensus 32 ~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999998766666
No 224
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.37 E-value=6.9 Score=41.61 Aligned_cols=41 Identities=39% Similarity=0.521 Sum_probs=30.7
Q ss_pred hCCCCCCCCCCCc---CcEEEEccCCCCCChhhHHhh----hcCceee
Q 016228 240 KQDDGALPQNLQK---ADIILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 240 khDDG~~p~~L~e---ADIVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
--|-|++.-...+ +=|.+||+-++|||-+|-=|| ++|||++
T Consensus 86 l~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~ 133 (483)
T KOG0780|consen 86 LLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVA 133 (483)
T ss_pred HhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCcee
Confidence 3455666554443 447889999999999887666 5799987
No 225
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=59.20 E-value=23 Score=29.95 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
..|+++|.+++|||=+...|.+.-+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~ 26 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF 26 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5699999999999999988885433
No 226
>PHA02244 ATPase-like protein
Probab=59.19 E-value=4.9 Score=42.01 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.|.|.|.++||||-+..+||+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999954
No 227
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=59.00 E-value=5.1 Score=33.33 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|.|-|.+++|||=++..||..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999954
No 228
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=58.97 E-value=8.1 Score=38.21 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.9
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhhh
Q 016228 249 NLQKADII-LSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eADIV-LvGVSRTsKTPlSmYLA~ 274 (393)
|+..=.|+ |.|.++||||-+|+.||-
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~ 124 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAV 124 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHH
Confidence 45545555 889999999999999993
No 229
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=58.94 E-value=11 Score=39.07 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=30.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
-|||.|||-+.+|||=|.=-|.+.-.+|+|||.+-
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT 193 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTT 193 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCc
Confidence 58999999999999999888886557999999764
No 230
>PRK05595 replicative DNA helicase; Provisional
Probab=58.83 E-value=83 Score=32.82 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=22.6
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhh
Q 016228 248 QNLQKADIIL-SGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 248 ~~L~eADIVL-vGVSRTsKTPlSmYLA~ 274 (393)
.||..-|+|+ -|-++.|||=+++.+|.
T Consensus 196 ~G~~~g~liviaarpg~GKT~~al~ia~ 223 (444)
T PRK05595 196 SGFQKGDMILIAARPSMGKTTFALNIAE 223 (444)
T ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHH
Confidence 5788888876 67889999999999884
No 231
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=58.82 E-value=7.7 Score=36.88 Aligned_cols=31 Identities=45% Similarity=0.598 Sum_probs=24.3
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 253 ADIILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
.=++|+|.++||||=+|+.++ ++|.++.-+.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 457889999999999987654 4677876665
No 232
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=58.79 E-value=6.6 Score=39.91 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
|-++|-|+||||-+.--|. ++||||+=+=
T Consensus 208 ~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 208 LGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 7789999999999976655 7899998554
No 233
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.77 E-value=1.3e+02 Score=30.05 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=84.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEEE-
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVYT- 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~T- 170 (393)
...+.|+.|.|.-+.....-.+.-.++--+ ++++.+.||- --+++++.+.|++..+++ +++++-
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~G------i~~~~~~l~~------~~~~~~l~~~i~~Ln~d~~v~Gi~VqlP 100 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRRVG------MDSLKVELPQ------ETTTEQLLAKIEELNANPDVHGILLQHP 100 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcC------CeEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 556889999988876665555444433323 4577778865 446788999999886653 566542
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCC
Q 016228 171 ----LADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGAL 246 (393)
Q Consensus 171 ----lvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~ 246 (393)
+...++.+.+ ..++ -+|-+.|+. .|.--.+ .+......+..+. +.+++ | |.
T Consensus 101 lp~~i~~~~~ld~I-~~aK-----DVdg~n~~n------~G~l~~~----~~~~~p~T~~gii---~~L~~---~--~i- 155 (283)
T PRK14192 101 VPAQIDERACFDAI-SLAK-----DVDGVTCLG------FGRMAMG----EAAYGSATPAGIM---RLLKA---Y--NI- 155 (283)
T ss_pred CccccCHHHHHhcc-CHHH-----hcCCCCccc------cCccccC----CCcccCCcHHHHH---HHHHH---c--CC-
Confidence 2223344444 3333 345566652 2221111 2332234443343 34443 1 22
Q ss_pred CCCCCcCcEEEEccCC-CCCChhhHHhhhcCcee
Q 016228 247 PQNLQKADIILSGVSR-TGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 247 p~~L~eADIVLvGVSR-TsKTPlSmYLA~~G~KV 279 (393)
++....++++|-|+ .|| |++++|.++|..|
T Consensus 156 --~l~Gk~vvViG~gg~vGk-pia~~L~~~gatV 186 (283)
T PRK14192 156 --ELAGKHAVVVGRSAILGK-PMAMMLLNANATV 186 (283)
T ss_pred --CCCCCEEEEECCcHHHHH-HHHHHHHhCCCEE
Confidence 34445799999999 665 9999999998654
No 234
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=58.50 E-value=66 Score=31.60 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=46.5
Q ss_pred EEEecChhHHHHHHHHH-HhhcCCCCCCCCCCCCHHHHHHHHHHHHHH--------hhhCCCCcEEeCCCccHHHHHHHH
Q 016228 303 FGLTINPLVLQSIRKAR-ARSLGFRDEIRSNYSEMDYVREELEFAGRI--------FAQNPVWPVIEVTGKAIEETAAVV 373 (393)
Q Consensus 303 ~GLTIdP~rL~~IR~eR-l~~lGl~~~~~S~YAs~e~I~~EL~~A~~l--------f~k~~g~pVIDVT~kSIEEtAa~I 373 (393)
|=||-+|+. |-+| ++.++- ......+|++.+|+..=... .++-.+.-+||+|++||||+...|
T Consensus 142 iFLtAS~e~----RA~RR~~q~~~----~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~i 213 (222)
T COG0283 142 IFLTASPEE----RAERRYKQLQA----KGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKI 213 (222)
T ss_pred EEEeCCHHH----HHHHHHHHHHh----ccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHH
Confidence 449999964 5444 343432 23355589999998653322 112235679999999999999999
Q ss_pred HHHHh
Q 016228 374 LRLYH 378 (393)
Q Consensus 374 l~~~~ 378 (393)
+++++
T Consensus 214 l~~~~ 218 (222)
T COG0283 214 LELIR 218 (222)
T ss_pred HHHHH
Confidence 99987
No 235
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=58.43 E-value=2e+02 Score=29.57 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=21.3
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhh
Q 016228 248 QNLQKADIIL-SGVSRTGKTPLSIYLA 273 (393)
Q Consensus 248 ~~L~eADIVL-vGVSRTsKTPlSmYLA 273 (393)
.|+..-|+|+ -|.+++|||=+++.+|
T Consensus 189 ~G~~~g~liviag~pg~GKT~~al~ia 215 (421)
T TIGR03600 189 NGLVKGDLIVIGARPSMGKTTLALNIA 215 (421)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 3677777655 6789999999999998
No 236
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=58.38 E-value=33 Score=35.31 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=50.2
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+.+++=-+..|. -|+.+++.+..-+|++ ++..++. .+ +.+.+.+++++. -+|+.+.-+.+.
T Consensus 83 RQ~l~~~~diG~~Ka~~~~~~l~~~np~v--------~i~~~~~-----~i-~~~~~~~~~~~~----DlVid~~Dn~~~ 144 (370)
T PRK05600 83 RQILFGASDVGRPKVEVAAERLKEIQPDI--------RVNALRE-----RL-TAENAVELLNGV----DLVLDGSDSFAT 144 (370)
T ss_pred ccccCChhHCCCHHHHHHHHHHHHHCCCC--------eeEEeee-----ec-CHHHHHHHHhCC----CEEEECCCCHHH
Confidence 455544455564 4555555555555653 2333332 13 344555555432 499999999999
Q ss_pred HHHHHHHHHHcCCCEee
Q 016228 177 AESAKKACELWGIPSTD 193 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vD 193 (393)
|..+.+.|.++++|+|.
T Consensus 145 r~~in~~~~~~~iP~v~ 161 (370)
T PRK05600 145 KFLVADAAEITGTPLVW 161 (370)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999999885
No 237
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=58.12 E-value=21 Score=35.23 Aligned_cols=111 Identities=18% Similarity=0.310 Sum_probs=70.2
Q ss_pred cCCHHH--HHHHHHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHH--HHHHHHhCCCC------CCCC
Q 016228 147 IDDVEQ--LMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPIT--EAIASHLGVSP------SGLP 214 (393)
Q Consensus 147 V~t~e~--l~~ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i--~~Le~~lG~~P------~~~~ 214 (393)
.+..-+ +++.++++++.| ++++.=+--.| .+.+.+.|+++|+..+-++.|.. +.|........ +.
T Consensus 100 ~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee-~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~-- 176 (263)
T CHL00200 100 YNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE-SDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVST-- 176 (263)
T ss_pred ccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHH-HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcC--
Confidence 444333 466777777766 68888776544 55677789999999999999976 46666555554 11
Q ss_pred CCCCCCCCCCc---HHHHhhhhhh-hhhhhCCCCCC-CCCCCc-----CcEEEEcc
Q 016228 215 RGAPGRNFPLS---EEYFRRIEAI-EFTIKQDDGAL-PQNLQK-----ADIILSGV 260 (393)
Q Consensus 215 ~~~pG~~~~ld---~~YF~RIeAI-EFAlkhDDG~~-p~~L~e-----ADIVLvGV 260 (393)
.+..|....+. .+|.+||... +-=+..+=|.+ +++..+ ||.|+||=
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 177 TGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred CCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 12455444444 6788888752 11133444555 433332 89999993
No 238
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.90 E-value=2.1e+02 Score=28.94 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=84.7
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-+.. ..++.-...+..+ ++.++.+.||- -.|++++.+.|+++.++. +|+++ =
T Consensus 32 ~P~Laii~vg~d~as~--~Yv~~k~k~~~~~----Gi~~~~~~l~~------~~~~~~l~~~I~~lN~d~~V~GIivqlP 99 (284)
T PRK14179 32 VPGLVVILVGDNPASQ--VYVRNKERSALAA----GFKSEVVRLPE------TISQEELLDLIERYNQDPTWHGILVQLP 99 (284)
T ss_pred CceEEEEEeCCChhHH--HHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 4567888888776543 3343333333322 35678888887 778899999999885543 55554 4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-...+....-+++ ||-|.|. +..|. .|.+. -.| ..| .. = |+=++| | |.
T Consensus 100 lp~~i~~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~~~-~~P-cTp---~a----v---i~lL~~---~--~i--- 154 (284)
T PRK14179 100 LPKHINEEKILLAIDPKKD---VDGFHPMNTGHLW--SGRPV-MIP-CTP---AG----I---MEMFRE---Y--NV--- 154 (284)
T ss_pred CCCCCCHHHHHhccCcccc---ccccCHhhHHHHh--CCCCC-CcC-CCH---HH----H---HHHHHH---h--CC---
Confidence 431 122223333333333 3666664 22332 23221 111 122 11 1 111221 1 22
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
+|...+|++||-|..==.|++++|.++|+.|.
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt 186 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT 186 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE
Confidence 56677899999999999999999999998775
No 239
>PRK06696 uridine kinase; Validated
Probab=57.75 E-value=7.7 Score=36.20 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh-hc---Cceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QK---GYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~---G~KVAN 281 (393)
|.+-|.|+||||-++--|| .. |.+|.-
T Consensus 25 I~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 25 VAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 6677899999999999999 33 666654
No 240
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=57.73 E-value=7.9 Score=29.15 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=24.8
Q ss_pred EEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH
Q 016228 304 GLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA 346 (393)
Q Consensus 304 GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A 346 (393)
|.+|+|+....|++..- . =.+.+.|||..|+...
T Consensus 1 gF~ie~~t~~ai~~~~~---~------L~~is~ERi~~El~ki 34 (64)
T PF12627_consen 1 GFKIEPETEEAIKENAE---L------LSKISKERIREELEKI 34 (64)
T ss_dssp T-EE-HHHHHHHHHHGG---G------GGGS-HHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHH---H------HhcCCHHHHHHHHHHH
Confidence 67999999999998754 2 2468999999998763
No 241
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=57.64 E-value=27 Score=35.58 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchH---HHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 016228 149 DVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPSTDVLGP---ITEAIASHLGVSPSGLPRGAPGRNFPL 224 (393)
Q Consensus 149 t~e~l~~ii~~a~~~~-~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p---~i~~Le~~lG~~P~~~~~~~pG~~~~l 224 (393)
++++-.+.+++.-+.+ |.|+.|= +-+.-+.+.+.|+++++|.+=..-+ ++..+..+|...-.+.. ..+|.
T Consensus 67 ~~e~~~~~~~~~~~~~~P~iIvt~-~~~~p~~l~~~a~~~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~-~~hg~---- 140 (304)
T TIGR00679 67 PEEEQKQIIHNLLTLNPPAIILSK-SFTDPTVLLQVNETYQVPILKTDLFSTELSFRLETYLNEQFAPTA-AIHGV---- 140 (304)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEC-cCCCCHHHHHHHHHhCCcEEEeCCcHHHHHHHHHHHHHHhhccce-eeeeE----
Confidence 5566677788775544 5555442 1122267778899999998754332 23333443433321100 12221
Q ss_pred cHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCce
Q 016228 225 SEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 225 d~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
+| .+..-=|+|.|.|+.||+=|.+-|-.+|++
T Consensus 141 ---------~v-------------~i~g~gvli~G~sg~GKS~lal~Li~rg~~ 172 (304)
T TIGR00679 141 ---------LV-------------EVYGVGVLITGKSGVGKSETALELINRGHR 172 (304)
T ss_pred ---------EE-------------EECCEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence 11 222234899999999999999999999976
No 242
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=57.63 E-value=6.8 Score=37.04 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|||+|.++||||=++-.||.
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999983
No 243
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=57.41 E-value=78 Score=27.21 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCC-CEEEEEcC---------CHHHHHHHHHHHHHcCCCEeecc
Q 016228 151 EQLMVIIKQAAKDG-AMLVYTLA---------DPSMAESAKKACELWGIPSTDVL 195 (393)
Q Consensus 151 e~l~~ii~~a~~~~-~iV~~Tlv---------d~eLr~~l~~~~~~~gi~~vDll 195 (393)
+.+.++++.+.+.+ .+|+.++. ...+.+.+++.|++++++++|.+
T Consensus 88 ~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~~ 142 (177)
T cd01822 88 ANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPFF 142 (177)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEechH
Confidence 45667777776555 46665542 24678899999999999999974
No 244
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=57.18 E-value=7.7 Score=35.02 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=25.4
Q ss_pred EEEEccCCCCCChhhHHhhhcC-ceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKG-YKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G-~KVANvP 283 (393)
|.|.|-.+||||=.|-+|+++| +.+-+.=
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D 31 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDAD 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCC
Confidence 7899999999999999999887 7776653
No 245
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=57.01 E-value=7.6 Score=41.46 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
|-++|-|+||||=|+--|. ++||||+=|
T Consensus 4 i~IvG~sgSGKTTLiekLI~~L~~rG~rVavI 35 (452)
T PRK14495 4 YGIIGWKDAGKTGLVERLVAAIAARGFSVSTV 35 (452)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4589999999999987655 789999974
No 246
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.93 E-value=8.6 Score=39.69 Aligned_cols=26 Identities=42% Similarity=0.607 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceee
Q 016228 255 IILSGVSRTGKTPLS----IYLAQKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlS----mYLA~~G~KVA 280 (393)
|.+|||.++|||-|. -||-+.|+||.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~Vl 171 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVL 171 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEE
Confidence 788999999999864 45557788873
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=56.65 E-value=10 Score=38.41 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=31.6
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016228 234 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 284 (393)
Q Consensus 234 AIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~----~G~KVANvPL 284 (393)
|.+|+=.++.+. --++|.|.++||||=|+.=+|+ +|++|.=++.
T Consensus 172 ~~~f~~~f~~~~-------~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 172 CKNFIENFDKNN-------ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred HHHHHHHHhccC-------CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 444666665432 2399999999999999988874 6887765544
No 248
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=56.41 E-value=34 Score=34.72 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=28.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDl 194 (393)
-+||.++-+.+.|.++.+.|..+++|+|+.
T Consensus 92 DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 92 DLVFNALDNLAARRHVNKMCLAADVPLIES 121 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 499999999999999999999999999994
No 249
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=56.36 E-value=2.3e+02 Score=30.07 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHhhC-C--CEEEEE-----cCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCC
Q 016228 149 DVEQLMVIIKQAAKD-G--AMLVYT-----LADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGR 220 (393)
Q Consensus 149 t~e~l~~ii~~a~~~-~--~iV~~T-----lvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~ 220 (393)
..++|.+.|.++.+. + .|+++| +.-.++...+++.-++.|+|++-+ ..||.
T Consensus 103 g~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v---------------------~t~Gf 161 (475)
T PRK14478 103 GEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPV---------------------NSPGF 161 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEE---------------------ECCCc
Confidence 457888888877442 2 344444 333455555555555556666622 24554
Q ss_pred CCCCcHHHHhhhhhh-hhhhhCCCCCCCCCCCcCcEEEEccCCC-CC-ChhhHHhhhcCceeeeccccCCCCCCcccccc
Q 016228 221 NFPLSEEYFRRIEAI-EFTIKQDDGALPQNLQKADIILSGVSRT-GK-TPLSIYLAQKGYKVANVPIVMGVELPKSLFQV 297 (393)
Q Consensus 221 ~~~ld~~YF~RIeAI-EFAlkhDDG~~p~~L~eADIVLvGVSRT-sK-TPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i 297 (393)
......-|..=.+|| +.-+.. ..+..-..-.|-|||-... |. .=+.-+|...|++|-- .+++-
T Consensus 162 ~g~~~~G~~~a~~al~~~l~~~---~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~--~~~~~--------- 227 (475)
T PRK14478 162 VGNKNLGNKLAGEALLDHVIGT---VEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVVA--CITGD--------- 227 (475)
T ss_pred ccchhhhHHHHHHHHHHHHhcc---CCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEE--EcCCC---------
Confidence 443445566555655 222211 1122222356888884321 21 1234567777887752 11111
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-HHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-LEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRL 376 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~E-L~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~ 376 (393)
..+.+|++.-- .-.++--|... +..|+.|=++ .|.|++.++--.+|+|..-+.++
T Consensus 228 ------------~s~eei~~~~~-----------A~lniv~~~~~~~~~A~~L~er-fGiP~~~~~p~G~~~T~~~l~~l 283 (475)
T PRK14478 228 ------------ARYDDVASAHR-----------ARANMMVCSGAMINLARKMEER-YGIPFFEGSFYGIEDTSDSLRQI 283 (475)
T ss_pred ------------CCHHHHHhccc-----------CcEEEEEcHHHHHHHHHHHHHH-hCCCEEecCCCcHHHHHHHHHHH
Confidence 23455553211 11122222322 2345555445 48888877666777777776554
No 250
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.30 E-value=33 Score=29.89 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhh--CC-CEEEEEcCC----------------HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016228 150 VEQLMVIIKQAAK--DG-AMLVYTLAD----------------PSMAESAKKACELWGIPSTDVLGPITE 200 (393)
Q Consensus 150 ~e~l~~ii~~a~~--~~-~iV~~Tlvd----------------~eLr~~l~~~~~~~gi~~vDll~p~i~ 200 (393)
.+.++.+++++.+ .+ .+|+.+... .++.+.+++.|++.|++++|+..++-.
T Consensus 80 ~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vd~~~~~~~ 149 (189)
T cd01825 80 RQQLREFIKRLRQILPNASILLVGPPDSLQKTGAGRWRTPPGLDAVIAAQRRVAKEEGIAFWDLYAAMGG 149 (189)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCCCCcccCCcHHHHHHHHHHHHHHcCCeEEeHHHHhCC
Confidence 3556666777655 23 355555421 246788999999999999999877643
No 251
>PLN03108 Rab family protein; Provisional
Probab=56.18 E-value=22 Score=32.63 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
-|+|||.+++|||=|...|++..+
T Consensus 8 kivivG~~gvGKStLi~~l~~~~~ 31 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 399999999999999998885433
No 252
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=56.01 E-value=7.1 Score=37.57 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~K 278 (393)
-++|.|.++||||=++.-+|+ .|.+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999999999994 4543
No 253
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=55.89 E-value=18 Score=32.54 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhh
Q 016228 344 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHD 379 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~ 379 (393)
+.++++.+++ +|+++-++ +..|+|.=..|++.+.+
T Consensus 130 ~~~~~~a~~~-~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 130 KQARKYAKAM-KAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4556666665 78888774 56688888877766543
No 254
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=55.79 E-value=8.2 Score=39.50 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=34.2
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeeccccCC
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMG 287 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLVp~ 287 (393)
+.+|--++.+. -.|+|.|+++||||=+...|| ..|+....|=+.+.
T Consensus 54 ~~~vl~~l~~~----------~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~ 100 (327)
T TIGR01650 54 TKAICAGFAYD----------RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSH 100 (327)
T ss_pred HHHHHHHHhcC----------CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34566666542 249999999999999999999 67877766655543
No 255
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=55.68 E-value=70 Score=29.10 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=65.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC-CEEEEEcCC
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG-AMLVYTLAD 173 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd 173 (393)
.++..||++-. +=++++.+++.+..+||++. +.-..-++ -+. +...++++.+.+.+ -+|+-.+-.
T Consensus 44 ~~~~~v~llG~-~~~~~~~~~~~l~~~yp~l~------i~g~~~g~------~~~-~~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 44 QKGLRVFLLGA-KPEVLEKAAERLRARYPGLK------IVGYHHGY------FGP-EEEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred HcCCeEEEECC-CHHHHHHHHHHHHHHCCCcE------EEEecCCC------CCh-hhHHHHHHHHHHcCCCEEEEECCC
Confidence 44689999944 44456666677889999853 33323333 333 34445788887666 589999988
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 174 PSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 174 ~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
|.=-..+.+.....+..++=-+|-.++.++......|
T Consensus 110 PkQE~~~~~~~~~l~~~v~~~vG~~~d~~aG~~~raP 146 (171)
T cd06533 110 PKQELWIARHKDRLPVPVAIGVGGSFDFLAGTVKRAP 146 (171)
T ss_pred CHHHHHHHHHHHHCCCCEEEEeceeeEeccCCcccCc
Confidence 8766666666666656666666777776665444333
No 256
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.50 E-value=38 Score=29.27 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHHHHH
Q 016228 175 SMAESAKKACELWGIPSTDVLGPITEAIA 203 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDll~p~i~~Le 203 (393)
++.+.+++.|++.++++||+...+.....
T Consensus 134 ~~n~~l~~~a~~~~~~~iD~~~~~~~~~~ 162 (191)
T cd01834 134 AYADAVRELAAENGVAFVDLFTPMKEAFQ 162 (191)
T ss_pred HHHHHHHHHHHHcCCeEEecHHHHHHHHH
Confidence 34566788899999999999887765443
No 257
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=55.50 E-value=7.2 Score=38.38 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChhhHHhh-----hcC-ceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLA-----QKG-YKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-----~~G-~KVANvPLV 285 (393)
+|++|.|+||||-|---+| .+| +...+-|+.
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence 7999999999999887777 344 344445554
No 258
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=55.45 E-value=18 Score=34.52 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHhhCC-C----EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 016228 149 DVEQLMVIIKQAAKDG-A----MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFP 223 (393)
Q Consensus 149 t~e~l~~ii~~a~~~~-~----iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ 223 (393)
+.++++++.+.....+ + ++=-.++++ .+.++..++.+|+|++|+ ..+ ..++.......|. -.
T Consensus 16 ~~e~l~~a~~~~~~~~~~l~~~L~~~~~ls~--~~l~~~la~~~~~p~vdl-~~~--------~~~~~~~~~~~~~--~~ 82 (274)
T TIGR03029 16 SEDEAERILRLQKQENIRFGEAALRLGLINE--DDIRQALSRQFEYPYLPP-NDG--------SFSPDLIAAYQPF--SP 82 (274)
T ss_pred CHHHHHHHHHHHHhhCccHHHHHHHcCCCCH--HHHHHHHHHHhCCCCccc-ccc--------ccccccccccCCC--CH
Confidence 5788888776654433 1 122223333 245555667778999984 211 1111110011221 12
Q ss_pred CcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEE--ccCCCCCChhhHHhh----hcCceee
Q 016228 224 LSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILS--GVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLv--GVSRTsKTPlSmYLA----~~G~KVA 280 (393)
+.|.|..=-..+.|......+ =+|.| +-.+.|||=+++.|| +.|.||.
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~---------~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vl 136 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGR---------KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTL 136 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCC---------eEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 445655544455555432221 13333 567899999888877 6799995
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=55.41 E-value=7.4 Score=32.40 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=17.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|.|.++||||=++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 57899999999999888873
No 260
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.39 E-value=7.8 Score=40.99 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=22.3
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceee
Q 016228 253 ADIILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
.=|.|+|+.++|||=|+-=|| ++|+||+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~ 132 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPC 132 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 358899999999999887777 4577665
No 261
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=55.31 E-value=8.2 Score=38.86 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=17.1
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
|.|+|++++|||=|+.=||
T Consensus 117 i~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7799999999999887777
No 262
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=55.28 E-value=42 Score=34.63 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=49.1
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+++++=-+..|. -|+.+++.+....|++ .++.+.- . ++ .+.+.+++++. -+||-+.-+...
T Consensus 84 Rq~l~~~~diG~~Ka~~a~~~l~~~np~v------~i~~~~~-~------i~-~~~~~~~~~~~----D~Vvd~~d~~~~ 145 (392)
T PRK07878 84 RQVIHGQSDVGRSKAQSARDSIVEINPLV------NVRLHEF-R------LD-PSNAVELFSQY----DLILDGTDNFAT 145 (392)
T ss_pred cccccChhcCCChHHHHHHHHHHHhCCCc------EEEEEec-c------CC-hhHHHHHHhcC----CEEEECCCCHHH
Confidence 555543333564 4555555555556653 2332221 2 33 34455555432 489999999999
Q ss_pred HHHHHHHHHHcCCCEee
Q 016228 177 AESAKKACELWGIPSTD 193 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vD 193 (393)
|..+.+.|.++++|+|.
T Consensus 146 r~~ln~~~~~~~~p~v~ 162 (392)
T PRK07878 146 RYLVNDAAVLAGKPYVW 162 (392)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999999875
No 263
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=55.25 E-value=7.6 Score=41.03 Aligned_cols=42 Identities=33% Similarity=0.480 Sum_probs=29.2
Q ss_pred hhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 230 RRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 230 ~RIeAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.=-+++++-+.|-+ |..+. --++|.|+++||||-+.-++|+.
T Consensus 194 ~l~e~v~lpl~~p~~~~~~gi~~p----~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 194 EIKEAVELPLTHPELYDDIGIKPP----KGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHHHHHHhhhhCHHHHHhcCCCCC----cEEEEECCCCCCHHHHHHHHHHh
Confidence 33456666666644 33322 12899999999999999999953
No 264
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=55.23 E-value=7.7 Score=35.59 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|.|.|.|++|||-++-.|.++
T Consensus 5 IwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 265
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=54.83 E-value=9 Score=36.35 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
||++|||+|||+-.-=-|+ ..|+|
T Consensus 15 i~vmGvsGsGKSTigk~L~~~l~~~ 39 (191)
T KOG3354|consen 15 IVVMGVSGSGKSTIGKALSEELGLK 39 (191)
T ss_pred EEEEecCCCChhhHHHHHHHHhCCc
Confidence 8999999999999988888 46755
No 266
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=54.80 E-value=26 Score=30.04 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=17.3
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016228 254 DIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA 273 (393)
-|+++|.+++|||=+-..|-
T Consensus 5 kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998877764
No 267
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=54.75 E-value=7.3 Score=37.26 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.4
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-++|.|.++||||-++-.+|+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 268
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=54.69 E-value=97 Score=29.26 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhhhc-----Cceeeec
Q 016228 248 QNLQKADI-ILSGVSRTGKTPLSIYLAQK-----GYKVANV 282 (393)
Q Consensus 248 ~~L~eADI-VLvGVSRTsKTPlSmYLA~~-----G~KVANv 282 (393)
.|+..-.+ +|.|.+++|||=+++.+|.. |++|.=+
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 35555554 56789999999999877733 5555433
No 269
>PRK09267 flavodoxin FldA; Validated
Probab=54.65 E-value=1e+02 Score=27.27 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=48.5
Q ss_pred CCcCcEEEEccCCCCCCh---------hhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHH
Q 016228 250 LQKADIILSGVSRTGKTP---------LSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARA 320 (393)
Q Consensus 250 L~eADIVLvGVSRTsKTP---------lSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl 320 (393)
|..=-+.++|+..+...+ +--.|.++|.+++..-...+...+... .+...+..||.+|+++=...+.+|+
T Consensus 78 l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~-~~~~~~~~g~~~d~~~~~~~td~~i 156 (169)
T PRK09267 78 FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASK-AVDDGKFVGLALDEDNQSELTDERI 156 (169)
T ss_pred CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccc-eeeCCEEEEEEecCCCchhhhHHHH
Confidence 344458899986554444 122356889998887666677766654 3345667999999988777777777
Q ss_pred h
Q 016228 321 R 321 (393)
Q Consensus 321 ~ 321 (393)
+
T Consensus 157 ~ 157 (169)
T PRK09267 157 E 157 (169)
T ss_pred H
Confidence 3
No 270
>PRK06893 DNA replication initiation factor; Validated
Probab=54.63 E-value=8.8 Score=36.17 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVANvPLV 285 (393)
++|.|.|+||||=|..=+|| +|.+|.=+++.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 78999999999999888774 57777666553
No 271
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=54.56 E-value=9.1 Score=36.96 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=25.2
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhhh----cCceeeecc
Q 016228 248 QNLQKADII-LSGVSRTGKTPLSIYLAQ----KGYKVANVP 283 (393)
Q Consensus 248 ~~L~eADIV-LvGVSRTsKTPlSmYLA~----~G~KVANvP 283 (393)
.|+..--++ +.|.++||||=+|+-+|. +|.||.=+=
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 356555554 589999999999997763 466664433
No 272
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.37 E-value=33 Score=30.38 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCC-CEEEEEcCCH----------HHHHHHHHHHHHcCCCEeecchHH
Q 016228 151 EQLMVIIKQAAKDG-AMLVYTLADP----------SMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 151 e~l~~ii~~a~~~~-~iV~~Tlvd~----------eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
+.+..+++++.+.+ .+|+.+.... ++.+.+++.|++.+++++|+...+
T Consensus 95 ~~l~~lv~~~~~~~~~vili~~pp~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (200)
T cd01829 95 QRIDELLNVARAKGVPVIWVGLPAMRSPKLSADMVYLNSLYREEVAKAGGEFVDVWDGF 153 (200)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCCChhHhHHHHHHHHHHHHHHHHcCCEEEEhhHhh
Confidence 44566666665444 4555554221 578889999999999999987665
No 273
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=54.33 E-value=9 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPL 284 (393)
|+|+|-+.+|||-+--.|.+.-..+.++|.
T Consensus 3 i~~~G~~~~GKssli~~l~~~~~~~~~~~~ 32 (168)
T cd01897 3 LVIAGYPNVGKSSLVNKLTRAKPEVAPYPF 32 (168)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCccCCCCC
Confidence 799999999999999999865455555554
No 274
>PLN02840 tRNA dimethylallyltransferase
Probab=54.30 E-value=8.6 Score=40.65 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KV 279 (393)
|+|+|++++|||=+++.|| +.|..+
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~~i 49 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNGEI 49 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCe
Confidence 8999999999999999999 456444
No 275
>PLN03110 Rab GTPase; Provisional
Probab=54.11 E-value=27 Score=32.30 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
-|++||-+.+|||-|-..|.+..+.
T Consensus 14 Ki~ivG~~~vGKStLi~~l~~~~~~ 38 (216)
T PLN03110 14 KIVLIGDSGVGKSNILSRFTRNEFC 38 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999988777655443
No 276
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=54.10 E-value=8.8 Score=31.45 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=55.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSN 332 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~-G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~ 332 (393)
+|+|+|.+++|||=+-=.|.+. -.++++.|-.-..... ..++.+..++. |. .+-|+.+ .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~~~~~~~~~~~-~v--------------DtpG~~~----~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-GQFEYNNKKFI-LV--------------DTPGIND----G 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-EEEEETTEEEE-EE--------------ESSSCSS----S
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-eeeeeceeeEE-EE--------------eCCCCcc----c
Confidence 4899999999999999999954 4578887655432211 12234444432 21 2223421 0
Q ss_pred CCCHHHHHHHHH-HHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 333 YSEMDYVREELE-FAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 333 YAs~e~I~~EL~-~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
...+.-.++.. +-+.+..-+.-+-|+|.++ -+++....|++.++
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~ 105 (116)
T PF01926_consen 61 -ESQDNDGKEIRKFLEQISKSDLIIYVVDASN-PITEDDKNILRELK 105 (116)
T ss_dssp -SHHHHHHHHHHHHHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH
T ss_pred -chhhHHHHHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh
Confidence 11111001222 3333322223467789666 56777888888884
No 277
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=54.07 E-value=10 Score=35.21 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChh------hHHhhhcCcee
Q 016228 255 IILSGVSRTGKTPL------SIYLAQKGYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPl------SmYLA~~G~KV 279 (393)
++|+|.+++|||=+ .++||+.|.-|
T Consensus 28 ~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 28 ILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 68999999999987 47888899755
No 278
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=54.03 E-value=45 Score=33.99 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=48.4
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+++++--+..|. -|+.+++.+..-.|++ .++.+.- . + +.+.+.+++++. -+|+-+.-+.+.
T Consensus 70 Rq~l~~~~diG~~Ka~~a~~~l~~~np~v------~v~~~~~-~------i-~~~~~~~~~~~~----DvVvd~~d~~~~ 131 (355)
T PRK05597 70 RQVIHSTAGVGQPKAESAREAMLALNPDV------KVTVSVR-R------L-TWSNALDELRDA----DVILDGSDNFDT 131 (355)
T ss_pred cCcccChhHCCChHHHHHHHHHHHHCCCc------EEEEEEe-e------c-CHHHHHHHHhCC----CEEEECCCCHHH
Confidence 444443344553 4555555555545653 2333322 2 3 344555555432 399999999999
Q ss_pred HHHHHHHHHHcCCCEee
Q 016228 177 AESAKKACELWGIPSTD 193 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vD 193 (393)
|..+.++|.++++|+|.
T Consensus 132 r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 132 RHLASWAAARLGIPHVW 148 (355)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999999885
No 279
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=53.97 E-value=38 Score=28.13 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCCCEEEEEcC-----------------CHHHHHHHHHHHHHcCCCEeecchHH
Q 016228 151 EQLMVIIKQAAKDGAMLVYTLA-----------------DPSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 151 e~l~~ii~~a~~~~~iV~~Tlv-----------------d~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
+.+.++++.+...+.+++.++. -..+.+.+++.|+++|++++|+...+
T Consensus 89 ~~l~~~i~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (179)
T PF13472_consen 89 QNLRRIIEQLRPHGPVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFIDLFDAF 153 (179)
T ss_dssp HHHHHHHHHHHTTSEEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEEEHHHHH
T ss_pred HHHHHHHHhhcccCcEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEEECHHHH
Confidence 3456667777666677777662 15678889999999999999987663
No 280
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=53.92 E-value=9.3 Score=34.89 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+++|.+|||||=++.-||..
T Consensus 4 ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 789999999999999999954
No 281
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=53.87 E-value=6.5 Score=41.86 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=25.4
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
.--|+|+|+++||||.++--||.. .|+|++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~----l~~~fi~ 80 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKL----ANAPFIK 80 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH----hCChhee
Confidence 356999999999999999999964 3566654
No 282
>PTZ00202 tuzin; Provisional
Probab=53.82 E-value=35 Score=37.27 Aligned_cols=97 Identities=18% Similarity=0.288 Sum_probs=56.4
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHH
Q 016228 233 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVL 312 (393)
Q Consensus 233 eAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL 312 (393)
+++.=++...|...++ =++|+|.++||||=|+-.++...-++ .+| +|.. --
T Consensus 272 a~Lr~VL~~~d~~~pr-----ivvLtG~~G~GKTTLlR~~~~~l~~~-------------qL~-vNpr----------g~ 322 (550)
T PTZ00202 272 SWVRQVLRRLDTAHPR-----IVVFTGFRGCGKSSLCRSAVRKEGMP-------------AVF-VDVR----------GT 322 (550)
T ss_pred HHHHHHHhccCCCCce-----EEEEECCCCCCHHHHHHHHHhcCCce-------------EEE-ECCC----------CH
Confidence 4455555444443332 46899999999999999888542211 221 1222 11
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCC
Q 016228 313 QSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVT 362 (393)
Q Consensus 313 ~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT 362 (393)
.+..+.=++.||++. ......=+++|++.|..+.+ .+. ..|||=++
T Consensus 323 eElLr~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~--e~G-rtPVLII~ 368 (550)
T PTZ00202 323 EDTLRSVVKALGVPN-VEACGDLLDFISEACRRAKK--MNG-ETPLLVLK 368 (550)
T ss_pred HHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHHHHH--hCC-CCEEEEEE
Confidence 444555678899843 22223455788888887766 223 46766444
No 283
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=53.80 E-value=8.9 Score=33.17 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
++|+|.|++|||=|..-|.
T Consensus 18 v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 18 VLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCCCCHHHHHHHhh
Confidence 7899999999999887765
No 284
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=53.74 E-value=9.2 Score=35.44 Aligned_cols=28 Identities=36% Similarity=0.549 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-GYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-G~KVANv 282 (393)
|.|.|..+||||=.|=+|+++ |+.+-+-
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~ 32 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDA 32 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeC
Confidence 789999999999999999987 9877653
No 285
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=53.61 E-value=35 Score=34.05 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=44.0
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceeeeccccC--------CCCCCccccccC-CCcEEEEecChhHHHHHHHHHH
Q 016228 255 IILSGVSRTGKTPLS----IYLAQKGYKVANVPIVM--------GVELPKSLFQVD-PEKVFGLTINPLVLQSIRKARA 320 (393)
Q Consensus 255 IVLvGVSRTsKTPlS----mYLA~~G~KVANvPLVp--------~v~lP~~L~~i~-~~KI~GLTIdP~rL~~IR~eRl 320 (393)
|+..|-=++|||=+| +++|++|.||--+=+=| +.++..+..++. .+.++++.|||+...+=..++.
T Consensus 4 ~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~~ 82 (305)
T PF02374_consen 4 LFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEEV 82 (305)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHHH
Confidence 577899999999965 88889999998775555 556666666666 2458999999986555444444
No 286
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=53.57 E-value=9.8 Score=34.78 Aligned_cols=32 Identities=34% Similarity=0.315 Sum_probs=28.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
|.|+|-+.+|||=+=--|...-.+|+|+|=+-
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~T 34 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQKVGNWPGTT 34 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEESTTSS
T ss_pred EEEECCCCCCHHHHHHHHHCCCceecCCCCCC
Confidence 78999999999988888887669999999764
No 287
>PRK08506 replicative DNA helicase; Provisional
Probab=53.51 E-value=1.7e+02 Score=31.07 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=58.0
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh--cC
Q 016228 248 QNLQKADIIL-SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS--LG 324 (393)
Q Consensus 248 ~~L~eADIVL-vGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~--lG 324 (393)
.||...|+|+ -|-++.|||=+++.+|....+ .+ .+--+|.|.++++.|.. |+-+ -|
T Consensus 187 ~G~~~G~LivIaarpg~GKT~fal~ia~~~~~-~g----------------~~V~~fSlEMs~~ql~~----Rlla~~s~ 245 (472)
T PRK08506 187 KGFNKGDLIIIAARPSMGKTTLCLNMALKALN-QD----------------KGVAFFSLEMPAEQLML----RMLSAKTS 245 (472)
T ss_pred CCCCCCceEEEEcCCCCChHHHHHHHHHHHHh-cC----------------CcEEEEeCcCCHHHHHH----HHHHHhcC
Confidence 5777787665 567899999999999954221 01 11226777777777764 3322 12
Q ss_pred CCCC--CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 325 FRDE--IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 325 l~~~--~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
++.. ..... +.+.. ..+..|-.-+.+. .+-+.|..+.+++++.+.+.++..
T Consensus 246 v~~~~i~~~~l-~~~e~-~~~~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~ 298 (472)
T PRK08506 246 IPLQNLRTGDL-DDDEW-ERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKS 298 (472)
T ss_pred CCHHHHhcCCC-CHHHH-HHHHHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHH
Confidence 2100 00001 11111 1233333334443 466666777788888887766543
No 288
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=53.30 E-value=6.7 Score=39.74 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.7
Q ss_pred EEEEccCCCCCChh
Q 016228 255 IILSGVSRTGKTPL 268 (393)
Q Consensus 255 IVLvGVSRTsKTPl 268 (393)
+||||.|+||||-|
T Consensus 30 ~vliGpSGsGKTTt 43 (309)
T COG1125 30 LVLIGPSGSGKTTT 43 (309)
T ss_pred EEEECCCCCcHHHH
Confidence 79999999999965
No 289
>PF13479 AAA_24: AAA domain
Probab=53.29 E-value=7.3 Score=36.32 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=16.1
Q ss_pred EEEEccCCCCCChhhHHh
Q 016228 255 IILSGVSRTGKTPLSIYL 272 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYL 272 (393)
++|-|+|++|||.++.++
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 789999999999998765
No 290
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=53.12 E-value=7.7 Score=40.05 Aligned_cols=56 Identities=30% Similarity=0.466 Sum_probs=35.7
Q ss_pred CCcCcEE-EEccCCCCCChhhHHhhh-----cC------ceeeecccc--------CCCCCCccccccCCCcEEEEe
Q 016228 250 LQKADII-LSGVSRTGKTPLSIYLAQ-----KG------YKVANVPIV--------MGVELPKSLFQVDPEKVFGLT 306 (393)
Q Consensus 250 L~eADIV-LvGVSRTsKTPlSmYLA~-----~G------~KVANvPLV--------p~v~lP~~L~~i~~~KI~GLT 306 (393)
+.+-+++ |+|+|+||||=|-.-+|= .| --+.++|-- .+..|-+.| .+-.+=-|||.
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl-tV~~NVafGLk 103 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM-TVEENVAFGLK 103 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCC-cHHHHhhhhhh
Confidence 4445555 999999999999888882 23 245555541 144444544 45555568887
No 291
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=53.01 E-value=58 Score=27.87 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=37.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
-+|+.+=+.++.++.+.+.|+..+||++.++.. ..|...+|.++
T Consensus 36 lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~--~eLg~a~Gk~~ 79 (104)
T PRK05583 36 LIIISNDISENSKNKFKNYCNKYNIPYIEGYSK--EELGNAIGRDE 79 (104)
T ss_pred EEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCH--HHHHHHhCCCC
Confidence 355566677999999999999999999998544 78999999876
No 292
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=52.77 E-value=9.1 Score=33.89 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.0
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
-|+++|-+.+|||-|...|.+..+.+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~ 27 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV 27 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 48999999999999999888655554
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=52.60 E-value=9.3 Score=40.26 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCCChhhHHhh-----hcCceeeec
Q 016228 253 ADIILSGVSRTGKTPLSIYLA-----QKGYKVANV 282 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA-----~~G~KVANv 282 (393)
.=|+++|+.++|||=++.-|| ++|+||+=+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 458999999999999977776 246666533
No 294
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=52.46 E-value=15 Score=30.61 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.3
Q ss_pred CCcEEeCCCccHHHHHHHHHHHH
Q 016228 355 VWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 355 g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
+.||||-++++.||+...|-+.+
T Consensus 57 ~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 57 KVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred CceEEecCCCCHHHHHHHHHHhh
Confidence 57999999999999999987655
No 295
>PRK05480 uridine/cytidine kinase; Provisional
Probab=52.25 E-value=7.9 Score=35.40 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|.|.|.|+||||=|+--|++
T Consensus 9 I~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999984
No 296
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=52.21 E-value=70 Score=28.08 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=34.4
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016228 166 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 209 (393)
Q Consensus 166 iV~~Tlvd~-eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~ 209 (393)
+|+..=++| ++.+.+...|+++|||++.+..- ..|...+|.+
T Consensus 50 VilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk--~eLG~a~Gk~ 92 (122)
T PRK04175 50 VVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK--KDLGKAAGLE 92 (122)
T ss_pred EEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH--HHHHHHhCCC
Confidence 555666666 68899999999999999887644 8999999987
No 297
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=52.19 E-value=18 Score=31.44 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHhhCCCEEE-EEcCCH-------HHHHHHHHHHHHcCCCEeecch--HHHHHHHHHhCCCC
Q 016228 147 IDDVEQLMVIIKQAAKDGAMLV-YTLADP-------SMAESAKKACELWGIPSTDVLG--PITEAIASHLGVSP 210 (393)
Q Consensus 147 V~t~e~l~~ii~~a~~~~~iV~-~Tlvd~-------eLr~~l~~~~~~~gi~~vDll~--p~i~~Le~~lG~~P 210 (393)
++|.+++++++++......+|| |+..=+ ++.+.+.....+..+.++||+. |+=+.+++.||+.=
T Consensus 4 L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H 77 (105)
T PF11009_consen 4 LTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH 77 (105)
T ss_dssp --SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---
T ss_pred cCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc
Confidence 7899999999988654444555 444222 2222333222224578899984 89999999999874
No 298
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.96 E-value=93 Score=31.43 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=87.1
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-
Q 016228 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY- 169 (393)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~- 169 (393)
....+.++.|.|.-... ..++.-......+ ++.++.+.||- -.+++++.+.|+++.++. +|+++
T Consensus 30 ~~P~Laii~vg~d~as~--~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIivql 97 (284)
T PRK14170 30 KKPGLAVVLVGDNQASR--TYVRNKQKRTEEA----GMKSVLIELPE------NVTEEKLLSVVEELNEDKTIHGILVQL 97 (284)
T ss_pred CCCeEEEEEeCCCHHHH--HHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEec
Confidence 35568888898876543 3444444333322 35678888887 778889999998875443 56665
Q ss_pred EcC-CHHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCC
Q 016228 170 TLA-DPSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALP 247 (393)
Q Consensus 170 Tlv-d~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p 247 (393)
=|- .-+-.+.++...-+++ ||-|.|. +..|. .|.+. -.| ..|-....|-+.| |.
T Consensus 98 PlP~~i~~~~i~~~I~p~KD---VDGl~p~N~g~l~--~~~~~-~~P-cTp~avi~lL~~~---------------~i-- 153 (284)
T PRK14170 98 PLPEHISEEKVIDTISYDKD---VDGFHPVNVGNLF--IGKDS-FVP-CTPAGIIELIKST---------------GT-- 153 (284)
T ss_pred CCCCCCCHHHHHhccCcccC---cccCChhhhhHHh--CCCCC-CCC-CCHHHHHHHHHHh---------------CC--
Confidence 443 1222234444443433 3666665 33332 34221 111 1221111111111 22
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 248 QNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 248 ~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
+|...++++||=|.+-=-||+++|.++|..|.
T Consensus 154 -~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt 185 (284)
T PRK14170 154 -QIEGKRAVVIGRSNIVGKPVAQLLLNENATVT 185 (284)
T ss_pred -CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 56677999999999999999999999986654
No 299
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=51.83 E-value=50 Score=33.54 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=44.7
Q ss_pred HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 016228 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGI 189 (393)
Q Consensus 110 TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi 189 (393)
-|+.+++.+..-+|++ +++.+.. --+.+.+.+++++ --+||-+.-+.+.|..+.+.|.++|+
T Consensus 81 Ka~aa~~~l~~inp~v--------~i~~~~~------~~~~~~~~~~~~~----~DlVid~~D~~~~r~~in~~~~~~~i 142 (338)
T PRK12475 81 KAIAAKEHLRKINSEV--------EIVPVVT------DVTVEELEELVKE----VDLIIDATDNFDTRLLINDLSQKYNI 142 (338)
T ss_pred HHHHHHHHHHHHCCCc--------EEEEEec------cCCHHHHHHHhcC----CCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 4566666666556653 3333332 2244555555432 24888888999999999999999999
Q ss_pred CEeec
Q 016228 190 PSTDV 194 (393)
Q Consensus 190 ~~vDl 194 (393)
|.|..
T Consensus 143 p~i~~ 147 (338)
T PRK12475 143 PWIYG 147 (338)
T ss_pred CEEEE
Confidence 98863
No 300
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=51.77 E-value=8.8 Score=34.48 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=24.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
.-|+|+|-+++|||-+--.|.+....+.|.|
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~ 72 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQL 72 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCcc
Confidence 5799999999999999988886654555544
No 301
>PRK06851 hypothetical protein; Provisional
Probab=51.73 E-value=39 Score=35.13 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=64.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec--cccC----------------CCCCCccccccCCC---cEE--EEec
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANV--PIVM----------------GVELPKSLFQVDPE---KVF--GLTI 307 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANv--PLVp----------------~v~lP~~L~~i~~~---KI~--GLTI 307 (393)
+||-|.++||||-|.-=|+ .+||.|-=+ |+-| +-.-|-.++...++ .++ |-..
T Consensus 33 ~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~l~~aivDgtaph~~~P~~pgav~eiinL~~~~ 112 (367)
T PRK06851 33 FILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPELKIAILDGTAPHVVDPKAPGAVEEIINLGDAW 112 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecCCCEEEEcCCCcCcCCCCCCCcceEEEEHHHHh
Confidence 8999999999999887644 568886643 4333 11223223222222 456 4457
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhhCCCCcEE-eCCCccHHHHHHHHHHHH
Q 016228 308 NPLVLQSIRKARARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPVI-EVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 308 dP~rL~~IR~eRl~~lGl~~~~~S~Y-As~e~I~~EL~~A~~lf~k~~g~pVI-DVT~kSIEEtAa~Il~~~ 377 (393)
|.+.|..-|++ +..+. ..| .-.++..+.|..|.++..++ -.-++ .+....+.|.+..+++.+
T Consensus 113 d~~~l~~~k~e-I~~~~------~~~~~~~~~Ay~~l~~A~~ihdd~-e~~y~~~md~~k~~~~~~~l~~~l 176 (367)
T PRK06851 113 DEDKLRKHKEE-ILKIN------EEISRCFQRAYEYLNEALAIHDEW-EKIYIENMDFAKANELTDELIQEL 176 (367)
T ss_pred ChHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88888776653 22221 112 23567778888888887663 22222 223334445555555444
No 302
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=51.65 E-value=10 Score=34.73 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=19.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA 273 (393)
|+..-+ +.|.|.|+||||-+++.+|
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHH
Confidence 444444 4578999999999999998
No 303
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=51.49 E-value=11 Score=34.98 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=27.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
|-|.|-.+||||=.|-||+++|++|-+---+-
T Consensus 3 IglTG~igsGKStv~~~l~~~G~~vidaD~i~ 34 (180)
T PF01121_consen 3 IGLTGGIGSGKSTVSKILAELGFPVIDADEIA 34 (180)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT-EEEEHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHCCCCEECccHHH
Confidence 56889999999999999999999999876553
No 304
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=51.48 E-value=8.8 Score=37.08 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.3
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-++|.|.++||||-+...+|+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999985
No 305
>PRK00698 tmk thymidylate kinase; Validated
Probab=51.35 E-value=1.1e+02 Score=27.39 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHhhhC-CCCcEEeCCCccHHHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE-FAGRIFAQN-PVWPVIEVTGKAIEETAAVVLRL 376 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~-~A~~lf~k~-~g~pVIDVT~kSIEEtAa~Il~~ 376 (393)
++.+|-|+.+|+.+.+ |++.-|-.+ .....+++. ...+. +-+.++++. ..|-+||.+ .++||+...|.++
T Consensus 128 pd~~i~l~~~~~~~~~----Rl~~R~~~~--~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~Id~~-~~~e~v~~~i~~~ 199 (205)
T PRK00698 128 PDLTLYLDVPPEVGLA----RIRARGELD--RIEQEGLDF-FERVREGYLELAEKEPERIVVIDAS-QSLEEVHEDILAV 199 (205)
T ss_pred CCEEEEEeCCHHHHHH----HHHhcCCcc--hhhhhhHHH-HHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHH
Confidence 3468999999977644 432222110 011111111 11121 222333221 147788865 6899999999998
Q ss_pred Hhh
Q 016228 377 YHD 379 (393)
Q Consensus 377 ~~~ 379 (393)
+.+
T Consensus 200 i~~ 202 (205)
T PRK00698 200 IKA 202 (205)
T ss_pred HHH
Confidence 864
No 306
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=51.24 E-value=12 Score=34.30 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANv 282 (393)
+.++|-+|||||=++..+|. .|-++.-+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 57899999999999999984 35444444
No 307
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.22 E-value=72 Score=34.18 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.1
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA 273 (393)
--|.|+|+.++|||=|..=||
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 468999999999999998888
No 308
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=51.21 E-value=21 Score=40.60 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCC-CCCCcCcEE-EEccCCCCCChhhHHh
Q 016228 195 LGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALP-QNLQKADII-LSGVSRTGKTPLSIYL 272 (393)
Q Consensus 195 l~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p-~~L~eADIV-LvGVSRTsKTPlSmYL 272 (393)
|.-.+..|++.+|....- .+.+.=-..++.|..-+..=|-.-. .||..--|+ |.|.++||||-||+.+
T Consensus 11 ~~~~~~~~~~~~g~~~~~----------~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~ 80 (790)
T PRK09519 11 LELAVAQIEKSYGKGSVM----------RLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHA 80 (790)
T ss_pred HHHHHHHHHHHhccchhc----------ccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHH
Confidence 556788888888876632 1221111122223332222222222 466666665 7799999999999776
Q ss_pred h
Q 016228 273 A 273 (393)
Q Consensus 273 A 273 (393)
+
T Consensus 81 ~ 81 (790)
T PRK09519 81 V 81 (790)
T ss_pred H
Confidence 5
No 309
>PRK07283 hypothetical protein; Provisional
Probab=51.00 E-value=63 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=35.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCC
Q 016228 166 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGV 208 (393)
Q Consensus 166 iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~ 208 (393)
+|+.+=+.++.++.+.+.|+.++||++.++ -...|...+|.
T Consensus 38 Vi~A~Das~~~~kk~~~~~~~~~Vp~~~~~--t~~eLG~a~Gk 78 (98)
T PRK07283 38 VFLANDAGPNLTKKVTDKSNYYQVEVSTVF--STLELSAAVGK 78 (98)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEeC--CHHHHHHHhCC
Confidence 555667789999999999999999999987 45789999997
No 310
>PRK07411 hypothetical protein; Validated
Probab=50.96 E-value=51 Score=34.09 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=51.3
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+++++=.+..|. -|+.+++.+...+|++ ++..++. .+ +.+.+.+++.+. -+|+.+.-+.+.
T Consensus 80 RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v--------~v~~~~~-----~~-~~~~~~~~~~~~----D~Vvd~~d~~~~ 141 (390)
T PRK07411 80 RQVIHGTSWVGKPKIESAKNRILEINPYC--------QVDLYET-----RL-SSENALDILAPY----DVVVDGTDNFPT 141 (390)
T ss_pred cCcccChHHCCCcHHHHHHHHHHHHCCCC--------eEEEEec-----cc-CHHhHHHHHhCC----CEEEECCCCHHH
Confidence 555553444553 4666666666677763 3333332 03 334555555432 399999999999
Q ss_pred HHHHHHHHHHcCCCEee
Q 016228 177 AESAKKACELWGIPSTD 193 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vD 193 (393)
|..+.+.|.+.++|.|.
T Consensus 142 r~~ln~~~~~~~~p~v~ 158 (390)
T PRK07411 142 RYLVNDACVLLNKPNVY 158 (390)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999999884
No 311
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.82 E-value=1.5e+02 Score=30.07 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=84.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-+ +...++.-...+..+ ++.++.+.||- --+++++.+.|+++.++. +|+++ =
T Consensus 32 ~P~LaiI~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~~l~~~I~~LN~D~~V~GIlvqlP 99 (288)
T PRK14171 32 SPKLAIVLVGDNPA--SIIYVKNKIKNAHKI----GIDTLLVNLST------TIHTNDLISKINELNLDNEISGIIVQLP 99 (288)
T ss_pred CCeEEEEEeCCCcc--HHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHcCCCCCCEEEEeCC
Confidence 44577888877654 445555555555443 35688888887 778889999998875543 66665 3
Q ss_pred cC-CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCC
Q 016228 171 LA-DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQN 249 (393)
Q Consensus 171 lv-d~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~ 249 (393)
|- .-+-.+.++...-+++| |-|.|. +.-.-+.|..+.-.| ..|-.. |+=++| | |. +
T Consensus 100 LP~~id~~~i~~~I~p~KDV---DGl~~~-N~g~l~~g~~~~~~P-cTp~av----------~~lL~~---y--~i---~ 156 (288)
T PRK14171 100 LPSSIDKNKILSAVSPSKDI---DGFHPL-NVGYLHSGISQGFIP-CTALGC----------LAVIKK---Y--EP---N 156 (288)
T ss_pred CCCCCCHHHHHhccCccccc---ccCCcc-chhhhhcCCCCCCcC-CCHHHH----------HHHHHH---h--CC---C
Confidence 32 11222334433334333 556554 111112333121111 122111 111121 1 22 4
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 250 LQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 250 L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
|...++|+||=|.+==-|++++|.++|.-|
T Consensus 157 l~GK~vvViGrS~iVGkPla~lL~~~~ATV 186 (288)
T PRK14171 157 LTGKNVVIIGRSNIVGKPLSALLLKENCSV 186 (288)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence 666789999999999999999999988555
No 312
>PRK05642 DNA replication initiation factor; Validated
Probab=50.80 E-value=11 Score=35.81 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 253 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
-=++|.|.++||||=|...++ ++|.+|.=+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~ 79 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL 79 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe
Confidence 347899999999999987765 457776533
No 313
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=50.63 E-value=5.7 Score=36.72 Aligned_cols=104 Identities=24% Similarity=0.266 Sum_probs=55.7
Q ss_pred CcEEEEccCCCCCChhhHHhhh----c-CceeeeccccCCCCCCccccc------------cCCCcEEEEecChhH----
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ----K-GYKVANVPIVMGVELPKSLFQ------------VDPEKVFGLTINPLV---- 311 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~----~-G~KVANvPLVp~v~lP~~L~~------------i~~~KI~GLTIdP~r---- 311 (393)
.-++|.|.++||||=+|+-++. . |-||.=+=+- +.|+++.+ .+.+++.-++..+..
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e---e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE---EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS---S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec---CCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 3477889999999999996653 3 6666533322 22222110 123456666555442
Q ss_pred -------HHHHHHHHHhhcCCC----CC--CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeC
Q 016228 312 -------LQSIRKARARSLGFR----DE--IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEV 361 (393)
Q Consensus 312 -------L~~IR~eRl~~lGl~----~~--~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDV 361 (393)
+..|++. ++.++.. ++ .-..|.+.+..+.-+..-.+.+++. ||.+|=+
T Consensus 97 ~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-~~t~llt 157 (226)
T PF06745_consen 97 PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-GVTTLLT 157 (226)
T ss_dssp SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-TEEEEEE
T ss_pred ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 2334432 2222210 00 1135677777777777777777775 7776633
No 314
>PRK08116 hypothetical protein; Validated
Probab=50.56 E-value=11 Score=36.79 Aligned_cols=28 Identities=43% Similarity=0.504 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVANv 282 (393)
++|.|.++||||-|..-+|| +|++|.=+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 89999999999999998886 46665433
No 315
>PRK03094 hypothetical protein; Provisional
Probab=50.49 E-value=17 Score=30.36 Aligned_cols=76 Identities=26% Similarity=0.272 Sum_probs=49.1
Q ss_pred EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHH
Q 016228 258 SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMD 337 (393)
Q Consensus 258 vGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e 337 (393)
|||. .|=|++-=||.++||.|.++.- +..+..+|-==+-|++.| .||..+
T Consensus 4 IaVE-~~Ls~i~~~L~~~GYeVv~l~~------~~~~~~~Da~VitG~d~n-------------~mgi~d---------- 53 (80)
T PRK03094 4 IGVE-QSLTDVQQALKQKGYEVVQLRS------EQDAQGCDCCVVTGQDSN-------------VMGIAD---------- 53 (80)
T ss_pred EEee-cCcHHHHHHHHHCCCEEEecCc------ccccCCcCEEEEeCCCcc-------------eecccc----------
Confidence 4565 6778999999999999988752 111323333334453322 133211
Q ss_pred HHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 338 YVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 338 ~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
...+.||||.++++.||+...|-+.+
T Consensus 54 --------------~~t~~pVI~A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 54 --------------TSTKGSVITASGLTADEICQQVESRL 79 (80)
T ss_pred --------------cccCCcEEEcCCCCHHHHHHHHHHhh
Confidence 11368999999999999999886544
No 316
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=50.44 E-value=31 Score=37.49 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=28.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc--------CceeeeccccC--CCCCCccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK--------GYKVANVPIVM--GVELPKSL 294 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~--------G~KVANvPLVp--~v~lP~~L 294 (393)
+-|+|.|-++|||+=+.-++-+. +.+ +|-|+|. -..+|+.+
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r-~~~pfv~inCaal~e~l 293 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGK-KSHPFVAVNCGAIAESL 293 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCcc-CCCCeEEeecccCChhh
Confidence 46999999999999988777654 333 6778875 22344444
No 317
>PRK07952 DNA replication protein DnaC; Validated
Probab=50.39 E-value=48 Score=32.28 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.6
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
-++|.|.++||||=|+.-+| .+|++|.-++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 58999999999999887766 4588887664
No 318
>PRK07667 uridine kinase; Provisional
Probab=50.29 E-value=11 Score=34.43 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.2
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|-|=|.|++|||.++-.|++
T Consensus 20 IgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55668999999999999984
No 319
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=50.27 E-value=60 Score=27.56 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+++|-+++|||-|-..|.+
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 78999999999999888874
No 320
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.22 E-value=28 Score=33.34 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHHhhCC--CEEEEEcC-C-HHHHHHHHHHHHHcCCCEeecchHH--HHHHHHHhCCCCCCC-CCCCCC
Q 016228 147 IDDVEQLMVIIKQAAKDG--AMLVYTLA-D-PSMAESAKKACELWGIPSTDVLGPI--TEAIASHLGVSPSGL-PRGAPG 219 (393)
Q Consensus 147 V~t~e~l~~ii~~a~~~~--~iV~~Tlv-d-~eLr~~l~~~~~~~gi~~vDll~p~--i~~Le~~lG~~P~~~-~~~~pG 219 (393)
+...++ .++++++.| +++|+-+. + .+-.+.+.+.|+++|+..+=++.|- .+.++..+...+.-. -...||
T Consensus 87 ~~~~~~---~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~ 163 (244)
T PRK13125 87 VDSLDN---FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPA 163 (244)
T ss_pred hhCHHH---HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCC
Confidence 555554 455554444 67777543 2 2333457778999999999999992 345555444333100 001222
Q ss_pred CCCCCcH---HHHhhhhhh--hhhhhCCCCC-CCCCCCc-----CcEEEEc
Q 016228 220 RNFPLSE---EYFRRIEAI--EFTIKQDDGA-LPQNLQK-----ADIILSG 259 (393)
Q Consensus 220 ~~~~ld~---~YF~RIeAI--EFAlkhDDG~-~p~~L~e-----ADIVLvG 259 (393)
.-..+.. ++.+++..+ +--+.-|=|. +++++.+ ||.+++|
T Consensus 164 ~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 164 TGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 2123443 355555543 2235567777 7666655 7999999
No 321
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=50.16 E-value=86 Score=31.17 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=52.4
Q ss_pred cEEEEEeCChHHH-HHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGeT-Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+.+|..-+..|.. ++.+++.+..-.|++ .++.+. .+ ++ .+.+.+++. .+--+||.++-+..-
T Consensus 72 RQ~~~~~~~vG~~Kve~~~~rl~~INP~~------~V~~i~-~~------i~-~e~~~~ll~---~~~D~VIdaiD~~~~ 134 (268)
T PRK15116 72 RQIHALRDNVGLAKAEVMAERIRQINPEC------RVTVVD-DF------IT-PDNVAEYMS---AGFSYVIDAIDSVRP 134 (268)
T ss_pred cccccChhhcChHHHHHHHHHHHhHCCCc------EEEEEe-cc------cC-hhhHHHHhc---CCCCEEEEcCCCHHH
Confidence 5565544455543 555556555556663 233321 23 43 455555542 122489999999889
Q ss_pred HHHHHHHHHHcCCCEeecch
Q 016228 177 AESAKKACELWGIPSTDVLG 196 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vDll~ 196 (393)
+..|.+.|.++++|+|..+|
T Consensus 135 k~~L~~~c~~~~ip~I~~gG 154 (268)
T PRK15116 135 KAALIAYCRRNKIPLVTTGG 154 (268)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 99999999999999998764
No 322
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=50.02 E-value=8.9 Score=35.24 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|.|+|.|++|||=++-.|++.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999853
No 323
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=49.92 E-value=9.2 Score=39.99 Aligned_cols=35 Identities=40% Similarity=0.582 Sum_probs=27.8
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 248 QNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 248 ~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
-.+...-|+|+|+++||||=+.-.||.. .|+|++.
T Consensus 104 ~~~~~~~iLl~Gp~GtGKT~lAr~lA~~----l~~pf~~ 138 (412)
T PRK05342 104 VELQKSNILLIGPTGSGKTLLAQTLARI----LDVPFAI 138 (412)
T ss_pred cccCCceEEEEcCCCCCHHHHHHHHHHH----hCCCcee
Confidence 3456678999999999999999999943 3667663
No 324
>PRK08223 hypothetical protein; Validated
Probab=49.81 E-value=29 Score=34.92 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=48.3
Q ss_pred cEEEEEeCChHHH-HHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCH--
Q 016228 98 KSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADP-- 174 (393)
Q Consensus 98 ~~IfiVSDsTGeT-Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~-- 174 (393)
+.+++-.+..|.. |+.+.+.+....|. ++++.++. .+ +.+.+.++++.. -+|+-.+-+.
T Consensus 69 RQ~l~~~~diG~~Kve~a~~~l~~iNP~--------v~V~~~~~-----~l-~~~n~~~ll~~~----DlVvD~~D~~~~ 130 (287)
T PRK08223 69 RQAGAMMSTLGRPKAEVLAEMVRDINPE--------LEIRAFPE-----GI-GKENADAFLDGV----DVYVDGLDFFEF 130 (287)
T ss_pred cccCcChhHCCCcHHHHHHHHHHHHCCC--------CEEEEEec-----cc-CccCHHHHHhCC----CEEEECCCCCcH
Confidence 5555544556754 44555555555565 33444432 03 345566666443 3777666554
Q ss_pred HHHHHHHHHHHHcCCCEee
Q 016228 175 SMAESAKKACELWGIPSTD 193 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vD 193 (393)
+.|..+.++|.++|+|+|.
T Consensus 131 ~~r~~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 131 DARRLVFAACQQRGIPALT 149 (287)
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 8899999999999999987
No 325
>PLN02318 phosphoribulokinase/uridine kinase
Probab=49.80 E-value=12 Score=41.65 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=39.5
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 222 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 222 ~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..+|.-||--|.|++.--++++|.-. |-|.|.|++|||=++-.|+..
T Consensus 42 ~sfd~g~~~~ira~qlL~~~~~~riI-------IGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 42 LSFEKGFFVVIRACQLLAQKNDGIIL-------VGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred cccccchhhhhHHHHHHHhcCCCeEE-------EEEECCCCCcHHHHHHHHHhh
Confidence 46778899999999998887775332 778999999999999999954
No 326
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=49.80 E-value=9 Score=35.81 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|.+.|.|+||||=+|-.|+..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999999954
No 327
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=49.56 E-value=53 Score=34.27 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHhhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEe
Q 016228 147 IDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPST 192 (393)
Q Consensus 147 V~t~e~l~~ii~~a~~~~-~iV~~Tlvd~eLr~~l~~~~~~~gi~~v 192 (393)
|-|-+++.++++.|.+++ ++--+.+.|.+..+.+-+.+++.+-|+|
T Consensus 9 ~~~~~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvI 55 (357)
T TIGR01520 9 VITGDDVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPII 55 (357)
T ss_pred ccCHHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEE
Confidence 889999999999998888 8999999999999999999999998876
No 328
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=49.50 E-value=11 Score=37.24 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp 286 (393)
|.++|-|.||||=|+.-|+ ++| +|+=+=--+
T Consensus 4 i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 4 LSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 6789999999999988776 678 887654433
No 329
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.34 E-value=58 Score=29.35 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHH
Q 016228 174 PSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 174 ~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
.++.+.+++.|++++++++|+.+.+
T Consensus 155 ~~~~~~~~~~a~~~~~~~iD~~~~~ 179 (208)
T cd01839 155 KGLADAYRALAEELGCHFFDAGSVG 179 (208)
T ss_pred HHHHHHHHHHHHHhCCCEEcHHHHh
Confidence 4677889999999999999986643
No 330
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.28 E-value=2.9e+02 Score=27.82 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=84.3
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-
Q 016228 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY- 169 (393)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~- 169 (393)
....+.++.|.|--+.. ..++.-......+ +..++.+.||- -.|++++.+.|+++.++. +|+++
T Consensus 25 ~~P~Laii~vg~d~as~--~Yv~~k~k~~~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIlvql 92 (279)
T PRK14178 25 LYPRLATVIVGDDPASQ--MYVRMKHRACERV----GIGSVGIELPG------DATTRTVLERIRRLNEDPDINGILVQL 92 (279)
T ss_pred CCCeEEEEEeCCChhHH--HHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEcC
Confidence 35567888888776543 3333333333322 35678888888 788999999999875443 55554
Q ss_pred EcCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCC
Q 016228 170 TLAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALP 247 (393)
Q Consensus 170 Tlvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p 247 (393)
=|-. -+-.+.+....-+++ ||=|.|. +..| +.|.+. -.| ..|-....+-+.| |.
T Consensus 93 PLp~~i~~~~v~~~I~p~KD---VDGl~~~n~g~l--~~~~~~-~~P-cTp~av~~ll~~~---------------~i-- 148 (279)
T PRK14178 93 PLPKGVDTERVIAAILPEKD---VDGFHPLNLGRL--VSGLPG-FAP-CTPNGIMTLLHEY---------------KI-- 148 (279)
T ss_pred CCCCCCCHHHHHhccCcccC---cccCChhhHHHH--hCCCCC-CCC-CCHHHHHHHHHHc---------------CC--
Confidence 4431 122233333333333 3666664 2223 234321 111 1221111111222 12
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcCceeee
Q 016228 248 QNLQKADIILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 248 ~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
+|..++++++|-|-.-=-|++++|.++|..|.-
T Consensus 149 -~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv 181 (279)
T PRK14178 149 -SIAGKRAVVVGRSIDVGRPMAALLLNADATVTI 181 (279)
T ss_pred -CCCCCEEEEECCCccccHHHHHHHHhCCCeeEE
Confidence 678899999999965556999999999866643
No 331
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=48.87 E-value=49 Score=28.74 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhC--C-CEEEEEcC---------------CHHHHHHHHHHHHHcCCCEeecchHHHH
Q 016228 150 VEQLMVIIKQAAKD--G-AMLVYTLA---------------DPSMAESAKKACELWGIPSTDVLGPITE 200 (393)
Q Consensus 150 ~e~l~~ii~~a~~~--~-~iV~~Tlv---------------d~eLr~~l~~~~~~~gi~~vDll~p~i~ 200 (393)
.+.+..+++.+.+. + .+|+.|+. -.++.+.+++.|+++++++||+...+..
T Consensus 74 ~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~~~~~ 142 (174)
T cd01841 74 IKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPELGVTFIDLNDVLVD 142 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHHCCCEEEEcHHHHcC
Confidence 44566667766543 2 36666642 1346688899999999999999887643
No 332
>PRK14529 adenylate kinase; Provisional
Probab=48.86 E-value=11 Score=36.35 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
|+|+|..++|||-.|-.|| ..|+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 8999999999999999999 5666543
No 333
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=48.76 E-value=79 Score=26.63 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G 276 (393)
|+++|.+++|||=|--.|.+..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7999999999998877777543
No 334
>PRK12377 putative replication protein; Provisional
Probab=48.76 E-value=48 Score=32.40 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=29.1
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 233 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 233 eAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
.|.+|+-.+..+ ..-++|.|.++||||=|+.=+| ++|++|.=+
T Consensus 89 ~a~~~a~~~~~~-------~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 89 QAKSIADELMTG-------CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred HHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 455565555432 1358999999999999877666 457766433
No 335
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=48.75 E-value=12 Score=31.72 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
|+++|.+++|||=+.--|.+..+
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 79999999999999877776554
No 336
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.73 E-value=95 Score=31.52 Aligned_cols=148 Identities=15% Similarity=0.096 Sum_probs=83.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-+. ...++.-...+..+ ++.++.+.||- -.+++++.+.|+++.++. +|+++ =
T Consensus 32 ~p~LaiI~vgdd~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIivq~P 99 (297)
T PRK14186 32 PPGLAVLRVGDDPAS--AVYVRNKEKACARV----GIASFGKHLPA------DTSQAEVEALIAQLNQDERVDGILLQLP 99 (297)
T ss_pred CceEEEEEeCCChHH--HHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 455778888877643 34444444444332 35677788876 668889999998875433 66665 4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-.+.+....-+++ ||-|.|. +..| +.|... -.| ..|-....|-+.| |.
T Consensus 100 LP~~i~~~~i~~~I~p~KD---VDGl~~~n~g~l--~~~~~~-~~P-cTp~aii~lL~~~---------------~i--- 154 (297)
T PRK14186 100 LPKHLDEVPLLHAIDPDKD---ADGLHPLNLGRL--VKGEPG-LRS-CTPAGVMRLLRSQ---------------QI--- 154 (297)
T ss_pred CCCCCCHHHHHhccCcccC---cccCChhhHHHH--hCCCCC-CCC-CCHHHHHHHHHHh---------------CC---
Confidence 421 112333333333333 3666654 2222 233221 111 1221111111222 22
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
+|...++++||=|.+==-|++++|.++|..|
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atV 185 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATV 185 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEE
Confidence 5566789999999998889999999999666
No 337
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=48.69 E-value=90 Score=28.80 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHhhhCCCCcEEeCCCc---cHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVTGK---AIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT~k---SIEEtAa~Il~~~~~r 380 (393)
.++++.+++ +|+++.++.+ .|+|.=..|.+.+.++
T Consensus 131 ~~~~~~~~~-~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 131 EAEKLAKDL-GMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHh-CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 355566665 8999987654 8888888888766544
No 338
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=48.69 E-value=13 Score=33.30 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=23.7
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVANv 282 (393)
|||.|..++|||=++=-||+ .|++|.-+
T Consensus 6 IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 6 IVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 89999999999999999993 37787643
No 339
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=48.65 E-value=12 Score=32.79 Aligned_cols=28 Identities=39% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 257 LSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 257 LvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
.=|-.++|||-++..|| ++|+||+=+=+
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EcCCCCccHHHHHHHHHhcccccccccccccc
Confidence 33557899999888766 67998874433
No 340
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=48.58 E-value=27 Score=38.75 Aligned_cols=105 Identities=27% Similarity=0.343 Sum_probs=63.1
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeecc-ccCCCCCCccccccCCCcEE----EEecChhHHHHHHHHHHhhcCC
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVP-IVMGVELPKSLFQVDPEKVF----GLTINPLVLQSIRKARARSLGF 325 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvP-LVp~v~lP~~L~~i~~~KI~----GLTIdP~rL~~IR~eRl~~lGl 325 (393)
..-=|||+|--|+|||-|-|=|+.--| +-||| ..|.+.+|...+ +.++- ----+++-...+|++= +.+..
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef-~~~VP~rl~~i~IPadvt---Pe~vpt~ivD~ss~~~~~~~l~~Ei-rkA~v 82 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEF-VDAVPRRLPRILIPADVT---PENVPTSIVDTSSDSDDRLCLRKEI-RKADV 82 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhc-cccccccCCccccCCccC---cCcCceEEEecccccchhHHHHHHH-hhcCE
Confidence 334499999999999999999996644 44555 446899997664 34332 2223445455555542 22322
Q ss_pred CCCCCCCC-----CCHHHHHH-HHHHHHHHhhhCCCCcEEeCCC
Q 016228 326 RDEIRSNY-----SEMDYVRE-ELEFAGRIFAQNPVWPVIEVTG 363 (393)
Q Consensus 326 ~~~~~S~Y-----As~e~I~~-EL~~A~~lf~k~~g~pVIDVT~ 363 (393)
--..| .++++|+. =|=..+++|-+....|||=|-+
T Consensus 83 ---i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGN 123 (625)
T KOG1707|consen 83 ---ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGN 123 (625)
T ss_pred ---EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEee
Confidence 12345 45566653 3556677774444689995533
No 341
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=48.54 E-value=17 Score=35.86 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=23.8
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
=|.++|.+++|||=|+--|+ ..|++|+-+=
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47889999999999776655 5699998543
No 342
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=48.49 E-value=46 Score=34.87 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=73.2
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeecccc---CCCC--------------CCccccccCCCcEEEEecChhHHH
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV---MGVE--------------LPKSLFQVDPEKVFGLTINPLVLQ 313 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV---p~v~--------------lP~~L~~i~~~KI~GLTIdP~rL~ 313 (393)
.-|||=|||-.-.||.-|---+.+--=|+||||++ |..- +|--+---..+ +|| --+-|.
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G--~GL--G~~FLr 233 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG--VGL--GLRFLR 233 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccC--CCc--cHHHHH
Confidence 35999999999999988777777878999999987 3221 12111111111 122 234566
Q ss_pred HHHHHHHhhcCCCCC---CCCCCCCHHHHHHHHH-HHHHHhhhCCCCcEEeCCC-ccHHHHHHHHHHHHh
Q 016228 314 SIRKARARSLGFRDE---IRSNYSEMDYVREELE-FAGRIFAQNPVWPVIEVTG-KAIEETAAVVLRLYH 378 (393)
Q Consensus 314 ~IR~eRl~~lGl~~~---~~S~YAs~e~I~~EL~-~A~~lf~k~~g~pVIDVT~-kSIEEtAa~Il~~~~ 378 (393)
-|=+-|+-..=++-. ....+.+.+.|..||+ |...|+.| +.|-|.|=-+ ---||.+....+.+.
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K-~~ivv~NKiD~~~~~e~~~~~~~~l~ 302 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEK-PRIVVLNKIDLPLDEEELEELKKALA 302 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccC-ceEEEEeccCCCcCHHHHHHHHHHHH
Confidence 666666532222111 1234778888888886 45777777 4777777666 333444444444443
No 343
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=48.36 E-value=8.5 Score=35.92 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=18.7
Q ss_pred EccCCCCCChhhHHhh-hcCce
Q 016228 258 SGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 258 vGVSRTsKTPlSmYLA-~~G~K 278 (393)
.|||+||||-..-=|| +.|+|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAK 22 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCc
Confidence 5999999999999999 67865
No 344
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.00 E-value=3.1e+02 Score=27.76 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=83.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-. ....++.-..++..+ ++.++.+.||- --+++++.+.|+++.++. +|+++ -
T Consensus 31 ~P~Laii~vgdd~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~~l~~~I~~lN~D~~V~GIlvq~P 98 (281)
T PRK14183 31 VPGLAVILVGDDPA--SHTYVKMKAKACDRV----GIYSITHEMPS------TISQKEILETIAMMNNNPNIDGILVQLP 98 (281)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCccCeEEEeCC
Confidence 55677888877654 344445544444432 35677888877 668888999998885443 55554 4
Q ss_pred cC-CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCC
Q 016228 171 LA-DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQN 249 (393)
Q Consensus 171 lv-d~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~ 249 (393)
|- .-+-.+.++...-+++ +|-|.|. +.-.-+.|.+. - .|--.... |+=++| | |. +
T Consensus 99 lP~~i~~~~i~~~I~p~KD---VDGl~~~-n~g~l~~g~~~-~----~PcTp~av-------i~lL~~---~--~i---~ 154 (281)
T PRK14183 99 LPKHIDTTKILEAIDPKKD---VDGFHPY-NVGRLVTGLDG-F----VPCTPLGV-------MELLEE---Y--EI---D 154 (281)
T ss_pred CCCCCCHHHHHhccCchhc---ccccChh-hhhHHhcCCCC-C----CCCcHHHH-------HHHHHH---c--CC---C
Confidence 42 1122223333333333 3666663 11111234321 1 12111111 111111 1 11 6
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 250 LQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 250 L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
|...++++||=|.+==.|++++|.++|--|
T Consensus 155 l~Gk~vvViGrS~~VG~Pla~lL~~~~AtV 184 (281)
T PRK14183 155 VKGKDVCVVGASNIVGKPMAALLLNANATV 184 (281)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence 677799999999998899999999988544
No 345
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=48.00 E-value=12 Score=32.25 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..-|+|+|.+++|||-+-..|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 466999999999999999988854
No 346
>PLN02674 adenylate kinase
Probab=47.94 E-value=12 Score=36.63 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.1
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KV 279 (393)
-|+|+|..++|||=+|-.|| .+|+..
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 49999999999999999999 567655
No 347
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.79 E-value=56 Score=37.27 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=47.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCC-CcEEEEecChhHHHHHHHHH--HhhcCCCCCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDP-EKVFGLTINPLVLQSIRKAR--ARSLGFRDEIRS 331 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~-~KI~GLTIdP~rL~~IR~eR--l~~lGl~~~~~S 331 (393)
|.|||++++|||=|.-=||.+ |+ ..+. +||.=++.|..|.-.+-+-+ .+.+|++. ..
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~-~~-----------------~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv--~~ 247 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAAR-CV-----------------AREGADQLALLTTDSFRIGALEQLRIYGRILGVPV--HA 247 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhh-HH-----------------HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc--cc
Confidence 679999999999999888853 11 1122 23444466666643332211 12345532 12
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCcc
Q 016228 332 NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKA 365 (393)
Q Consensus 332 ~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kS 365 (393)
.| +.+.+.+.|+. ++.. ..-+||+.+++
T Consensus 248 ~~-~~~~l~~al~~----~~~~-D~VLIDTAGRs 275 (767)
T PRK14723 248 VK-DAADLRFALAA----LGDK-HLVLIDTVGMS 275 (767)
T ss_pred cC-CHHHHHHHHHH----hcCC-CEEEEeCCCCC
Confidence 23 44445544443 3443 56788988865
No 348
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=47.73 E-value=11 Score=38.00 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=27.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
|.|||-+.+|||-|---|.+...+|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pft 31 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFT 31 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCc
Confidence 5799999999998877777777899999996
No 349
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=47.66 E-value=70 Score=31.02 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=50.0
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHH-HHHHHHHhhCCCEEEEEcCCH
Q 016228 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQL-MVIIKQAAKDGAMLVYTLADP 174 (393)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l-~~ii~~a~~~~~iV~~Tlvd~ 174 (393)
.+++++=.+..|.. |+.+++.+....|++ +++.+. -. |.+.+.. .+.+++ --+|+.++-+.
T Consensus 40 nRQflf~~~dvGk~Ka~va~~~l~~~np~v------~i~~~~-~~------i~~~~~~~~~f~~~----~DvVi~a~Dn~ 102 (234)
T cd01484 40 NRQFLFRPKDIGRPKSEVAAEAVNDRNPNC------KVVPYQ-NK------VGPEQDFNDTFFEQ----FHIIVNALDNI 102 (234)
T ss_pred ccccCCChhhCChHHHHHHHHHHHHHCCCC------EEEEEe-cc------CChhhhchHHHHhC----CCEEEECCCCH
Confidence 35666655666754 444455555555653 232211 12 4322221 223322 35999999999
Q ss_pred HHHHHHHHHHHHcCCCEeec
Q 016228 175 SMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDl 194 (393)
+.|.++.+.|...++|+||.
T Consensus 103 ~aR~~ln~~c~~~~iplI~~ 122 (234)
T cd01484 103 IARRYVNGMLIFLIVPLIES 122 (234)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999994
No 350
>PRK08760 replicative DNA helicase; Provisional
Probab=47.36 E-value=1e+02 Score=32.81 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=55.0
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCC
Q 016228 248 QNLQKADIIL-SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFR 326 (393)
Q Consensus 248 ~~L~eADIVL-vGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~ 326 (393)
.||...|+|+ .|-++.|||=+++-+|....+-.+. +--+|.|..+++.|.. |+.+++-.
T Consensus 224 ~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~----------------~V~~fSlEMs~~ql~~----Rl~a~~s~ 283 (476)
T PRK08760 224 AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKK----------------GVAVFSMEMSASQLAM----RLISSNGR 283 (476)
T ss_pred cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCC----------------ceEEEeccCCHHHHHH----HHHHhhCC
Confidence 5778888766 5778999999999998443211111 1125667777766653 44333210
Q ss_pred CC----CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 327 DE----IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 327 ~~----~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
-+ ......+.+ - ..+..|-..+.+. .+-+-|..+.+++++.+.+.++.
T Consensus 284 i~~~~i~~g~l~~~e-~-~~~~~a~~~l~~~-~l~I~d~~~~t~~~I~~~~r~l~ 335 (476)
T PRK08760 284 INAQRLRTGALEDED-W-ARVTGAIKMLKET-KIFIDDTPGVSPEVLRSKCRRLK 335 (476)
T ss_pred CcHHHHhcCCCCHHH-H-HHHHHHHHHHhcC-CEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 000001100 0 1122333333443 45556666777777777665544
No 351
>PRK00698 tmk thymidylate kinase; Validated
Probab=47.32 E-value=11 Score=33.72 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|++.|++++|||=++-.|++
T Consensus 6 I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 6 ITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999985
No 352
>PRK07933 thymidylate kinase; Validated
Probab=47.17 E-value=15 Score=34.56 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
|++-|+.++|||-++--|+ .+|++|.=.
T Consensus 3 IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 3 IAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 7899999999999777666 568887643
No 353
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=46.85 E-value=33 Score=29.48 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHhhCC--CEEEEEc-CCHHHHHHHHHHHHHcCCCEeec
Q 016228 149 DVEQLMVIIKQAAKDG--AMLVYTL-ADPSMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 149 t~e~l~~ii~~a~~~~--~iV~~Tl-vd~eLr~~l~~~~~~~gi~~vDl 194 (393)
+.+.+.+.+++..+.+ ++++.+- --+++-+.+.+.|.++++|.+.+
T Consensus 57 ~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 57 DEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEI 105 (123)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEe
Confidence 4666899999988777 7888765 44588889999999999998864
No 354
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=46.77 E-value=11 Score=34.34 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|+|++|||=+.--|+.
T Consensus 6 i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999988884
No 355
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=46.71 E-value=9.3 Score=33.14 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=14.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
++|.|.+++|||=+.-.+.
T Consensus 27 ~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp EEE-B-TTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999988555
No 356
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=46.42 E-value=1.4e+02 Score=27.60 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=39.1
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH--------hhhCCCCcEEeCCCccHHHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI--------FAQNPVWPVIEVTGKAIEETAA 371 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~l--------f~k~~g~pVIDVT~kSIEEtAa 371 (393)
.--|=||-+|+.=.+-|-.=++..| .=.+++.|.++|..=.+. .++-.+.-+||+|+++|||+-+
T Consensus 81 ~~KifLtAs~e~RA~RR~~e~~~~g-------~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~ 153 (157)
T PF02224_consen 81 DLKIFLTASPEVRARRRYKELQEKG-------KKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVE 153 (157)
T ss_dssp SEEEEEE--HHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHH
Confidence 3346699999754443332233333 235788888888653322 1122366799999999999999
Q ss_pred HHHH
Q 016228 372 VVLR 375 (393)
Q Consensus 372 ~Il~ 375 (393)
.|++
T Consensus 154 ~il~ 157 (157)
T PF02224_consen 154 KILE 157 (157)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9985
No 357
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=46.41 E-value=69 Score=27.86 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|+|.+++|||-+-..|.+.
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 799999999999998888753
No 358
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=46.39 E-value=13 Score=38.12 Aligned_cols=29 Identities=31% Similarity=0.618 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhh-----hcCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLA-----QKGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-----~~G~KVANvP 283 (393)
+||.|++++|||=+.-.|+ ..|++|+=+-
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~ 35 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVIT 35 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEc
Confidence 5899999999999954444 4788887654
No 359
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=46.28 E-value=37 Score=36.24 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=58.7
Q ss_pred EeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHH
Q 016228 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 182 (393)
Q Consensus 103 VSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~ 182 (393)
|....|.|-..+.+++|-|=|++ ..+-- |++.+.+..+++. ...|-+|+.||--.+....+.+
T Consensus 292 v~~~~g~~f~~~lr~~LR~dPDv----------I~vGE------iRd~eta~~a~~a-a~tGHlvlsTlHa~sa~~ai~R 354 (486)
T TIGR02533 292 VNPKIGLTFAAGLRAILRQDPDI----------IMVGE------IRDLETAQIAIQA-SLTGHLVLSTLHTNDAAGAVTR 354 (486)
T ss_pred EccccCccHHHHHHHHHhcCCCE----------EEEeC------CCCHHHHHHHHHH-HHhCCcEEEEECCCCHHHHHHH
Confidence 45677999999999999999873 33445 9999988877765 4578899999999999999998
Q ss_pred HHHHcCCCEeec
Q 016228 183 ACELWGIPSTDV 194 (393)
Q Consensus 183 ~~~~~gi~~vDl 194 (393)
.. .+|++-..+
T Consensus 355 L~-~lg~~~~~l 365 (486)
T TIGR02533 355 LI-DMGVEPFLL 365 (486)
T ss_pred HH-HhCCCHHHH
Confidence 87 567764433
No 360
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=46.24 E-value=10 Score=34.65 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=19.9
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
.+-++|+|+|++|||=|+-=||+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~ 25 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE 25 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999999998884
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=46.20 E-value=13 Score=32.40 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.3
Q ss_pred cCcEEEEccCCCCCChhhHHhh-hcCceeeeccccC
Q 016228 252 KADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM 286 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLVp 286 (393)
.-.++++|.+.+||+.+-=+|. .++.++++.|-+-
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t 135 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT 135 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc
Confidence 4669999999999999988888 6678888887554
No 362
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.13 E-value=40 Score=27.71 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=34.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHh
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHL 206 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~l 206 (393)
.||+...++.++...+++.|++.|+|++=.=+.-+..|++.+
T Consensus 52 VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 52 VIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred EEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 466677999999999999999999999977656666666554
No 363
>PRK13768 GTPase; Provisional
Probab=45.97 E-value=13 Score=35.73 Aligned_cols=30 Identities=37% Similarity=0.695 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhH----HhhhcCceeeeccc
Q 016228 255 IILSGVSRTGKTPLSI----YLAQKGYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSm----YLA~~G~KVANvPL 284 (393)
+++.|.+++|||=++. +|+++|.+|+=+=+
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 6889999999999664 55578888765533
No 364
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=45.92 E-value=14 Score=32.05 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
-|+++|.+++|||=|...|.+.-+.
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~~~~ 30 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFN 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3899999999999998888754343
No 365
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=45.91 E-value=1.1e+02 Score=33.61 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
=|+|+|.|+||||=++-.||.
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred EEEEECCCCChHHHHHHHHHH
Confidence 488999999999999999994
No 366
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=45.56 E-value=12 Score=34.09 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=57.2
Q ss_pred EEEEccCCCCCChhhHHhhhcC--ceeeecccc--CCCCCCccccccCC-----------CcEEEEecChhHHHHHHHH-
Q 016228 255 IILSGVSRTGKTPLSIYLAQKG--YKVANVPIV--MGVELPKSLFQVDP-----------EKVFGLTINPLVLQSIRKA- 318 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G--~KVANvPLV--p~v~lP~~L~~i~~-----------~KI~GLTIdP~rL~~IR~e- 318 (393)
|+|||.+++|||=|+--|-..- |+--..-.. .-+.-|-|.++... -.+|+|..|...-..+=.-
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~ 83 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG 83 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch
Confidence 7899999999999998887432 321111000 12455555554321 2466666665421110000
Q ss_pred -----HHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHH
Q 016228 319 -----RARSLGFRD--EIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVV 373 (393)
Q Consensus 319 -----Rl~~lGl~~--~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~I 373 (393)
+...+|.=. +-.++-++.+++++.|..|-- ++ + ++|=-+|+..|||.-..|
T Consensus 84 fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--~~-i-f~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 84 FASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--KE-I-FEVSAVTGEGIEELKDYL 141 (143)
T ss_pred hhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCC--CC-e-EEEECCCCcCHHHHHHHH
Confidence 011122200 001123555555555555421 22 2 455577899999876654
No 367
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=45.38 E-value=22 Score=33.80 Aligned_cols=44 Identities=39% Similarity=0.616 Sum_probs=33.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccCCCCCCccccccCCCcEEEEec
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTI 307 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTI 307 (393)
|.+-|..++|||-++.-+| ++||||.-+ ++|++. +.+|-+|.+|
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf-~t~EVR--------~gGkR~GF~I 55 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGF-ITPEVR--------EGGKRIGFKI 55 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeE-Eeeeee--------cCCeEeeeEE
Confidence 7889999999999999777 789999876 444433 4556666654
No 368
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=45.27 E-value=55 Score=33.85 Aligned_cols=90 Identities=14% Similarity=0.280 Sum_probs=70.7
Q ss_pred CcccccccCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---
Q 016228 88 GEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG--- 164 (393)
Q Consensus 88 ~~~~~~~~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~--- 164 (393)
+.+.++..+.-.+|+--|..|.+--..+...|+.-.. ++.++.|.| . |.|.+-.+.++..+...+
T Consensus 113 DYDkVElANMNRLFf~P~QaGlsKv~AA~~TL~~iNP-----DV~iE~hn~-N------ITTvenFd~F~~~is~g~~~~ 180 (422)
T KOG2336|consen 113 DYDKVELANMNRLFFQPDQAGLSKVDAAVQTLAEINP-----DVVIEVHNY-N------ITTVENFDTFTDRISNGSLCP 180 (422)
T ss_pred ecchhhhhcccccccCcccccchHHHHHHHHHHhcCC-----CeEEEEeec-c------eeeehhHHHHHHHhhcCCCCC
Confidence 5677778888899999999999998888888887732 234666666 4 788888888887764322
Q ss_pred ----CEEEEEcCCHHHHHHHHHHHHHcCC
Q 016228 165 ----AMLVYTLADPSMAESAKKACELWGI 189 (393)
Q Consensus 165 ----~iV~~Tlvd~eLr~~l~~~~~~~gi 189 (393)
-+|++-.-|=|-|-.+..+|.+.+-
T Consensus 181 gkpvDLVLSCVDNfEARMavN~ACNE~~q 209 (422)
T KOG2336|consen 181 GKPVDLVLSCVDNFEARMAVNQACNELNQ 209 (422)
T ss_pred CCcceEEeeehhhHHHHHHHHHHHHHhhh
Confidence 3899999899999999999997643
No 369
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=45.12 E-value=14 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANv 282 (393)
|+|||-+++|||-+-.-+.+..+.+.+|
T Consensus 7 v~~vG~~~vGKTsli~~~~~~~f~~~~~ 34 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSLNAY 34 (169)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCcccC
Confidence 8999999999999988777655553444
No 370
>PF13173 AAA_14: AAA domain
Probab=45.09 E-value=13 Score=31.50 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|.|+-|+|||=+...+|+.
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888854
No 371
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=44.89 E-value=8.7 Score=37.22 Aligned_cols=13 Identities=54% Similarity=0.843 Sum_probs=12.0
Q ss_pred EEEEccCCCCCCh
Q 016228 255 IILSGVSRTGKTP 267 (393)
Q Consensus 255 IVLvGVSRTsKTP 267 (393)
|+|+|.+|+|||=
T Consensus 2 iLLmG~~~SGKTS 14 (232)
T PF04670_consen 2 ILLMGPRRSGKTS 14 (232)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEEcCCCCChhh
Confidence 7999999999985
No 372
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=44.83 E-value=12 Score=39.40 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=22.0
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhh
Q 016228 250 LQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 250 L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
+...-|+|+|+++||||=++-.||.
T Consensus 114 ~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 114 LSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHH
Confidence 4456799999999999999999993
No 373
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.80 E-value=24 Score=31.14 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHc-CCCEeecchHHH
Q 016228 175 SMAESAKKACELW-GIPSTDVLGPIT 199 (393)
Q Consensus 175 eLr~~l~~~~~~~-gi~~vDll~p~i 199 (393)
.+.+.+++.|.+. ++.++|+.+++.
T Consensus 137 ~~n~~~~~~a~~~~~~~~id~~~~~~ 162 (191)
T cd01836 137 LLNRALERLASEAPRVTLLPATGPLF 162 (191)
T ss_pred HHHHHHHHHHhcCCCeEEEecCCccc
Confidence 6778889999999 999999988764
No 374
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.54 E-value=60 Score=32.68 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=85.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-. +...++.-...+..+ ++.++.+.||- -.+++++.+.|+++.++. +|+++ =
T Consensus 30 ~P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIlvqlP 97 (282)
T PRK14169 30 TPTLAVVLVGSDPA--SEVYVRNKQRRAEDI----GVRSLMFRLPE------ATTQADLLAKVAELNHDPDVDAILVQLP 97 (282)
T ss_pred CCeEEEEEeCCChh--HHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 45677888887654 344455444444432 35688888887 778899999998875433 56554 4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-.+.+....-+++ ||-|.|. +..|. +|.+. -.| ..|-....|-+.| |.
T Consensus 98 Lp~~i~~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~~~-~~P-cTp~avi~lL~~~---------------~i--- 152 (282)
T PRK14169 98 LPAGLDEQAVIDAIDPDKD---VDGFSPVSVGRLW--ANEPT-VVA-STPYGIMALLDAY---------------DI--- 152 (282)
T ss_pred CCCCCCHHHHHhhcCcccC---cccCChhhhHHHh--cCCCC-CCC-CCHHHHHHHHHHh---------------CC---
Confidence 431 122334443333433 3666663 22222 23221 101 1221111111222 22
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
+|...++++||=|.+==-||+++|.++|..|.
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt 184 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT 184 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 45567899999999988899999999987664
No 375
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=44.46 E-value=1.2e+02 Score=25.60 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=35.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 166 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 166 iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
+|+.+=+.++.++.+...|++++||++...+ -...|...+|.+.
T Consensus 36 ViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~-tk~eLG~a~Gk~~ 79 (99)
T PRK01018 36 VIVASNCPKDIKEDIEYYAKLSGIPVYEYEG-SSVELGTLCGKPF 79 (99)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECC-CHHHHHHHhCCCC
Confidence 5556667899999999999999999987533 4488999999764
No 376
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=44.44 E-value=42 Score=30.57 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchH
Q 016228 147 IDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGP 197 (393)
Q Consensus 147 V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p 197 (393)
-.+.++-.+.++++...+ +||+.+.-...+...+++ |.+.|||+|-+-.+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~-~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEK-AKAAGIPVVTVDSD 89 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHH-HHHTTSEEEEESST
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHH-HhhcCceEEEEecc
Confidence 567777778888876665 688887777778877765 67789999987666
No 377
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=44.35 E-value=15 Score=33.62 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=17.8
Q ss_pred EEEEccCCCCCChhhHHh-h----hcCce-eeecc-cc
Q 016228 255 IILSGVSRTGKTPLSIYL-A----QKGYK-VANVP-IV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYL-A----~~G~K-VANvP-LV 285 (393)
.++.|..|+|||=.++.. . .+|-+ ++|+| |-
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~tni~gL~ 40 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYTNIPGLN 40 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE--TTB-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEEccCCcc
Confidence 478999999999988777 3 34655 67988 54
No 378
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=44.33 E-value=15 Score=31.01 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+++|-+.+|||-|.-.|.+.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999888754
No 379
>CHL00176 ftsH cell division protein; Validated
Probab=44.30 E-value=12 Score=41.41 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|.|.++||||=+.-+||+.
T Consensus 219 VLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999953
No 380
>PRK04213 GTP-binding protein; Provisional
Probab=44.29 E-value=14 Score=32.91 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 284 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPL 284 (393)
.-|+++|-+.+|||=|--.|.+.-+++.+.|-
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~ 41 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG 41 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCc
Confidence 46999999999999999888865567666663
No 381
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=44.19 E-value=16 Score=30.89 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
|+++|-+.+|||-+.--|....+..
T Consensus 3 i~iiG~~~~GKtsli~~l~~~~~~~ 27 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAA 27 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhccccc
Confidence 7899999999999999988554443
No 382
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=44.11 E-value=40 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
|+++|.+++|||-+...|.+.-+
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~~ 25 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDEF 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999885534
No 383
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=44.10 E-value=33 Score=35.42 Aligned_cols=122 Identities=24% Similarity=0.265 Sum_probs=60.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccccCCCCCCcccc------ccCCCcEEE-EecChhHHHH-H
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIVMGVELPKSLF------QVDPEKVFG-LTINPLVLQS-I 315 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~----~G~KVANvPLVp~v~lP~~L~------~i~~~KI~G-LTIdP~rL~~-I 315 (393)
|+..-. ++|.|.+++|||=+++.+|. .|.||.-+-. -+-+..+. ..+.++++- ...+.+.|.+ |
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~---EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG---EESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC---CcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 444444 45679999999999998873 4556654432 12222221 112222221 1122232222 2
Q ss_pred HHHHHhhcCCCC-------CCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeC---CC-------ccHHHHHHHHH
Q 016228 316 RKARARSLGFRD-------EIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEV---TG-------KAIEETAAVVL 374 (393)
Q Consensus 316 R~eRl~~lGl~~-------~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDV---T~-------kSIEEtAa~Il 374 (393)
++.+.+-+=+++ ..++..-+..++++-+..-.++.+++ ++++|=| |. +.+|..+..++
T Consensus 155 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~-~itvilvghvtk~g~~aG~~~leh~vD~Vi 229 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER-NIPIFIVGHVTKEGSIAGPKVLEHMVDTVL 229 (372)
T ss_pred HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEeeccCCCcccCcccchhhceEEE
Confidence 222211111110 00122334677887777778888886 9998644 32 23566666555
No 384
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=44.06 E-value=10 Score=36.78 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=16.5
Q ss_pred EEccCCCCCChhhHHhh
Q 016228 257 LSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 257 LvGVSRTsKTPlSmYLA 273 (393)
|+|.|+||||=+||-||
T Consensus 43 i~G~~gsGKTql~l~l~ 59 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLA 59 (256)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EEEecccccchHHHHHH
Confidence 89999999999999998
No 385
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=43.94 E-value=81 Score=27.50 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+++|.+.+|||=+--+|.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999887777643
No 386
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=43.86 E-value=15 Score=38.26 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cce
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-GYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-G~K 278 (393)
|+|+|.++||||=|+--||++ |..
T Consensus 222 IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 222 VAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 999999999999999999954 654
No 387
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.79 E-value=3.6e+02 Score=27.28 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=84.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-.... .++.-...+..+ ++.++.+.||- -.|++++.+.|+++.++. +|+++ =
T Consensus 31 ~P~LaiI~vg~d~as~~--Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIlvq~P 98 (285)
T PRK14191 31 RPKLAVILVGKDPASQT--YVNMKIKACERV----GMDSDLHTLQE------NTTEAELLSLIKDLNTDQNIDGILVQLP 98 (285)
T ss_pred CCeEEEEEeCCCHHHHH--HHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 45678888887765433 333333333221 35688888887 778999999999885543 55554 4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-.+.+....-+++ ||-|.|. +..| +.|.+.. .| ..| .||=-=++|- |.
T Consensus 99 lP~~i~~~~i~~~I~p~KD---VDGl~~~n~g~l--~~g~~~~-~P-cTp--------------~avi~lL~~~-~i--- 153 (285)
T PRK14191 99 LPRHIDTKMVLEAIDPNKD---VDGFHPLNIGKL--CSQLDGF-VP-ATP--------------MGVMRLLKHY-HI--- 153 (285)
T ss_pred CCCCCCHHHHHhcCCcccc---ccccChhhHHHH--hcCCCCC-CC-CcH--------------HHHHHHHHHh-CC---
Confidence 431 122233333333433 3666665 3333 2343211 01 122 1221112211 12
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
+|....+++||=|.+==+|++++|.++|..|
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtV 184 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASV 184 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEE
Confidence 5667789999999888899999999998555
No 388
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.71 E-value=11 Score=35.70 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh----hcCceeee
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA----QKGYKVAN 281 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA----~~G~KVAN 281 (393)
|+..-. +++.|.++||||-+++-++ +.|-|+.=
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~ly 54 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIY 54 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 444444 4558999999999998544 34666643
No 389
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=43.65 E-value=11 Score=34.89 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=25.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 284 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~----~G~KVANvPL 284 (393)
|+..-. ++|.|.+++|||=+|+++|. .|.+|..+=+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 454444 45689999999999998884 3666655433
No 390
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=43.57 E-value=14 Score=36.57 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.9
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KV 279 (393)
-++|.|.++||||=+...+| ..|.++
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 37999999999999999999 456543
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.44 E-value=18 Score=41.88 Aligned_cols=103 Identities=20% Similarity=0.369 Sum_probs=58.9
Q ss_pred EEEEccCCCCCChhhH---Hhh-hcCceeeecc-----ccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCC
Q 016228 255 IILSGVSRTGKTPLSI---YLA-QKGYKVANVP-----IVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGF 325 (393)
Q Consensus 255 IVLvGVSRTsKTPlSm---YLA-~~G~KVANvP-----LVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl 325 (393)
+|+-|||++||+=|.+ |-- |+-| +-.++ +++..+- ++-++|-||.=.. .|.+.+ .+
T Consensus 25 ~v~TGvSGSGKSSLafDtl~aEgqRry-~es~s~y~rq~l~~~~~------P~vd~i~gl~pai----ai~Q~~---~~- 89 (924)
T TIGR00630 25 VVITGLSGSGKSSLAFDTIYAEGQRRY-VESLSAYARQFLGVMDK------PDVDSIEGLSPAI----SIDQKT---TS- 89 (924)
T ss_pred EEEecCCCCCchhHHHHHHHHHHHHHH-HhhccHHHHHhhccCCC------CCcCeEcCCCceE----EEeccC---CC-
Confidence 6899999999999874 222 3322 11222 3333332 3334555553211 112222 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE-----eCCCccHHHHHHHHHHHH
Q 016228 326 RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-----EVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 326 ~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVI-----DVT~kSIEEtAa~Il~~~ 377 (393)
.+..++...+-+=-+|-+-||.+. |.|+- .+...+.+++++.|+.+.
T Consensus 90 ----~n~RSTVgT~Tei~~~LrlLfar~-g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 141 (924)
T TIGR00630 90 ----HNPRSTVGTITEIYDYLRLLFARV-GTPYCPNCGRPISSQSVSQIVDQILALP 141 (924)
T ss_pred ----CCCCcccchHHHHHHHHHHHHHhc-CCCCCCCCCCCcccCCHHHHHHHHHhCC
Confidence 233444445555478999999995 85543 356778999999998754
No 392
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=43.42 E-value=57 Score=33.20 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCC-------CcCcEEEE--ccCCCCCC
Q 016228 196 GPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNL-------QKADIILS--GVSRTGKT 266 (393)
Q Consensus 196 ~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L-------~eADIVLv--GVSRTsKT 266 (393)
...|...++.-...+ |.+.+|..+..+++=+++|..+=... ++..+.+ ..+-||.| +--++|||
T Consensus 47 ~~tlr~~e~~~~~~~---~~r~~~g~r~yt~~di~~l~~~~~~~----~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKT 119 (387)
T TIGR03453 47 DSYLRQLSLEGKGPE---PETLSNGRRSYTLEQINELRRHLAQR----GREARRYLPHRRGGEHLQVIAVTNFKGGSGKT 119 (387)
T ss_pred HHHHHHHHHcCCCCC---CCcCCCCceeeCHHHHHHHHHHHHhc----cccccccCCCcCCCCCceEEEEEccCCCcCHH
Confidence 445555555444322 13466667777776666666443321 3332222 22335444 34489999
Q ss_pred hhhHHhh----hcCceee
Q 016228 267 PLSIYLA----QKGYKVA 280 (393)
Q Consensus 267 PlSmYLA----~~G~KVA 280 (393)
-+|+.|| .+|+||.
T Consensus 120 T~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 120 TTAAHLAQYLALRGYRVL 137 (387)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 9988777 6799996
No 393
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=43.38 E-value=17 Score=30.67 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
|+++|-+++|||=|-..|.+......++.
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~~~~ 30 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIV 30 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcceec
Confidence 79999999999998888876544455553
No 394
>PF05729 NACHT: NACHT domain
Probab=43.35 E-value=16 Score=30.86 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
++|.|..++|||=++-+++
T Consensus 3 l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6899999999999999988
No 395
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=43.32 E-value=56 Score=28.24 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-|++||.+.+|||=|.-.|.+.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998888743
No 396
>PLN02459 probable adenylate kinase
Probab=43.19 E-value=15 Score=36.46 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.2
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCce
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
-|||+|..++|||=+|-.|| .+|+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~ 56 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVP 56 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 49999999999999999999 56765
No 397
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=43.16 E-value=2.4e+02 Score=26.91 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=64.7
Q ss_pred HHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC--CEEEEEcCCHH-HHHHHHHHHHHcCC
Q 016228 113 HAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG--AMLVYTLADPS-MAESAKKACELWGI 189 (393)
Q Consensus 113 ~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~e-Lr~~l~~~~~~~gi 189 (393)
.+++++..++|+ ..++.|.. +++.+...+. +.+-| -+.||.-...+ +.+.++ .++++|+
T Consensus 54 ~~v~~lr~~~~~------~~lDvHLm--------~~~p~~~i~~---~~~~Gad~itvH~ea~~~~~~~~l~-~ik~~G~ 115 (228)
T PTZ00170 54 PVVKSLRKHLPN------TFLDCHLM--------VSNPEKWVDD---FAKAGASQFTFHIEATEDDPKAVAR-KIREAGM 115 (228)
T ss_pred HHHHHHHhcCCC------CCEEEEEC--------CCCHHHHHHH---HHHcCCCEEEEeccCCchHHHHHHH-HHHHCCC
Confidence 455556666654 34677776 4466554433 33333 35666655555 444444 4444543
Q ss_pred C-Eeecch-HHHHHHHHHh--CCCC-CCCCCCCCCCCCC-CcHHHHhhhhhh-----hhhhhCCCCCCCCCCCc-----C
Q 016228 190 P-STDVLG-PITEAIASHL--GVSP-SGLPRGAPGRNFP-LSEEYFRRIEAI-----EFTIKQDDGALPQNLQK-----A 253 (393)
Q Consensus 190 ~-~vDll~-p~i~~Le~~l--G~~P-~~~~~~~pG~~~~-ld~~YF~RIeAI-----EFAlkhDDG~~p~~L~e-----A 253 (393)
. -+.+.- .-++.++..+ +.-- -..-..+||..-+ ....-+.+|..+ ++.+.-|-|.++.++.+ |
T Consensus 116 ~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGa 195 (228)
T PTZ00170 116 KVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGA 195 (228)
T ss_pred eEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCC
Confidence 2 222221 1234444443 1000 0000113343222 223444454443 57788899999998854 7
Q ss_pred cEEEEcc
Q 016228 254 DIILSGV 260 (393)
Q Consensus 254 DIVLvGV 260 (393)
|++++|=
T Consensus 196 d~iVvGs 202 (228)
T PTZ00170 196 NVIVAGS 202 (228)
T ss_pred CEEEEch
Confidence 9999993
No 398
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=43.15 E-value=14 Score=32.07 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.0
Q ss_pred EEccCCCCCChhhHHhh-hcCceeeec
Q 016228 257 LSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 257 LvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|..++|||-+|-.|| .+|+..-++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 68999999999999999 567765554
No 399
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=43.07 E-value=18 Score=37.28 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+++.|.++||||=++.|++
T Consensus 45 ~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred EEEECCCCCCHhHHHHHHH
Confidence 9999999999999999999
No 400
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=43.03 E-value=21 Score=39.38 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=28.9
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCcee
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKV 279 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KV 279 (393)
.+|+++++.+.+ -.++.|..+||||=|..-+. +.|.+|
T Consensus 163 ~~Av~~~l~~~~----------~~lI~GpPGTGKT~t~~~ii~~~~~~g~~V 204 (637)
T TIGR00376 163 KEAVSFALSSKD----------LFLIHGPPGTGKTRTLVELIRQLVKRGLRV 204 (637)
T ss_pred HHHHHHHhcCCC----------eEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 458999887633 47899999999999887655 357654
No 401
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=42.98 E-value=16 Score=31.06 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.5
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.|++||-+.+|||=|...|.+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888754
No 402
>PRK04328 hypothetical protein; Provisional
Probab=42.97 E-value=11 Score=36.10 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCCCcCc-EEEEccCCCCCChhhHHhhhcCc
Q 016228 248 QNLQKAD-IILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 248 ~~L~eAD-IVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
.|+..-. ++|.|.++||||-+|+.++..|.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3454333 55689999999999997764343
No 403
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=42.87 E-value=17 Score=31.64 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
..|++||.+.+|||-|...|.+..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~ 26 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR 26 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999998886443
No 404
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=42.87 E-value=17 Score=30.90 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
-|+++|.+++|||=+.-.|.+..+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~ 27 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKE 27 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 48999999999999998887654443
No 405
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=42.66 E-value=19 Score=33.62 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=26.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
|.|.|-+++|||=++=+|+..|+.+-+---+
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~D~i 32 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFGISADRL 32 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEecchH
Confidence 6789999999999999999999887765433
No 406
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.65 E-value=3.9e+02 Score=27.61 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhC-C--CEEEEEc-C----CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCC
Q 016228 150 VEQLMVIIKQAAKD-G--AMLVYTL-A----DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRN 221 (393)
Q Consensus 150 ~e~l~~ii~~a~~~-~--~iV~~Tl-v----d~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~ 221 (393)
.+++.+.|.++.+. + .|+++|- + -.++...+++.-++.|++++-+ ..||..
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v---------------------~t~gf~ 128 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPL---------------------DVNHYR 128 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEe---------------------cCCCcc
Confidence 57888888877542 2 3444443 2 2333333333333334444433 245544
Q ss_pred CCCcHHHHhhhhhhhhhhhCCC---CCCCCCCCcCcEEEEccCCCCC------ChhhHHhhhcCceeeeccccCCCCCCc
Q 016228 222 FPLSEEYFRRIEAIEFTIKQDD---GALPQNLQKADIILSGVSRTGK------TPLSIYLAQKGYKVANVPIVMGVELPK 292 (393)
Q Consensus 222 ~~ld~~YF~RIeAIEFAlkhDD---G~~p~~L~eADIVLvGVSRTsK------TPlSmYLA~~G~KVANvPLVp~v~lP~ 292 (393)
-...+.|-.-+++|=..+..+. +.....-.+-.|-|||.+--+- .=+.-+|...|++|--+
T Consensus 129 g~~~~g~~~al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~---------- 198 (430)
T cd01981 129 VNELQAADETFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVV---------- 198 (430)
T ss_pred chHHHHHHHHHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEE----------
Confidence 4444567666666544432221 1000011245689999874331 23567788889988431
Q ss_pred cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-HHHHHHHhhhCCCCcEEeCCCccHHHHHH
Q 016228 293 SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-LEFAGRIFAQNPVWPVIEVTGKAIEETAA 371 (393)
Q Consensus 293 ~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~E-L~~A~~lf~k~~g~pVIDVT~kSIEEtAa 371 (393)
|.-. ..|.+||+.--..+. .-.|.+. ...|+.+-++. |+|++...--.+++|..
T Consensus 199 ----------~~~~---~~~~~i~~~~~A~ln-----------iv~~~~~~~~~a~~L~~~~-GiP~~~~~p~G~~~t~~ 253 (430)
T cd01981 199 ----------IPEG---ASVDDLNELPKAWFN-----------IVPYREYGLSAALYLEEEF-GMPSVKITPIGVVATAR 253 (430)
T ss_pred ----------EcCC---CCHHHHHhhhhCeEE-----------EEecHHHHHHHHHHHHHHh-CCCeEeccCCChHHHHH
Confidence 1111 234444433221111 1123222 33455555664 89988886666777766
Q ss_pred HHHHHH
Q 016228 372 VVLRLY 377 (393)
Q Consensus 372 ~Il~~~ 377 (393)
-+.++.
T Consensus 254 ~l~~i~ 259 (430)
T cd01981 254 FLREIQ 259 (430)
T ss_pred HHHHHH
Confidence 665544
No 407
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=42.63 E-value=27 Score=35.56 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCc-HHHHhhhhhhhhhhhCCCCCCCCCCCcCcE-EEEccCCCCCChhhHHh
Q 016228 195 LGPITEAIASHLGVSPSGLPRGAPGRNFPLS-EEYFRRIEAIEFTIKQDDGALPQNLQKADI-ILSGVSRTGKTPLSIYL 272 (393)
Q Consensus 195 l~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld-~~YF~RIeAIEFAlkhDDG~~p~~L~eADI-VLvGVSRTsKTPlSmYL 272 (393)
|...+..|++.+|....- .-|...... +..=--+.+++.++. .| ||..=-| .|.|.++||||=||+-+
T Consensus 6 ~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~i~TGi~~LD~~Lg--~G----Glp~G~iteI~G~~GsGKTtLaL~~ 75 (321)
T TIGR02012 6 LEAALAQIEKQFGKGSIM----RLGEKSVMDVETISTGSLSLDLALG--VG----GLPRGRIIEIYGPESSGKTTLALHA 75 (321)
T ss_pred HHHHHHHHHHHcCcceeE----ECcccccccCceecCCCHHHHHHhc--CC----CCcCCeEEEEECCCCCCHHHHHHHH
Confidence 556777788888876532 111111101 111112456666663 23 5554444 48899999999999987
Q ss_pred hhc
Q 016228 273 AQK 275 (393)
Q Consensus 273 A~~ 275 (393)
+..
T Consensus 76 ~~~ 78 (321)
T TIGR02012 76 IAE 78 (321)
T ss_pred HHH
Confidence 743
No 408
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=42.55 E-value=19 Score=34.41 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=15.8
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+++.|..+||||=|++..|
T Consensus 22 v~~~G~AGTGKT~LA~a~A 40 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAA 40 (205)
T ss_dssp EEEE--TTSSTTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7889999999999999988
No 409
>PRK06851 hypothetical protein; Provisional
Probab=42.35 E-value=37 Score=35.27 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=69.1
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec--cccC----CCC------------CCcccccc-CCCcEEEE---ecC
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANV--PIVM----GVE------------LPKSLFQV-DPEKVFGL---TIN 308 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANv--PLVp----~v~------------lP~~L~~i-~~~KI~GL---TId 308 (393)
++|-|..+||||=+...+| .+|++|.=| |+-| .|= -|-.++.. +...++-| -+|
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD~viIPel~~ai~d~t~ph~~~P~~~g~e~i~ly~~~~d 296 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMVIIPELNFAIFDSTAPHEYFPSREGDEIIDMYDELID 296 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcceEEeccCCEEEEeCCCCcccCCCCCcceeeechhhhcC
Confidence 8999999999999998877 579988765 3444 111 23333211 22467777 889
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE-eCCCccHHHHHHHHHHHHh
Q 016228 309 PLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-EVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 309 P~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVI-DVT~kSIEEtAa~Il~~~~ 378 (393)
++.|..-+++-. ... ...+.-+++...=|..|+.+..++ -.-+| ++--..+++....|++.+.
T Consensus 297 ~~~l~~~~~eI~-~~~-----~~~~~~~~~A~~~l~~Ak~~hD~l-E~~Y~~amDf~kv~~~~~~l~~~i~ 360 (367)
T PRK06851 297 PGTDEKYAEEIK-KAK-----ERYKAKLNEATSFLAKAKALHDKL-EEIYIPAMDFSKVDAIKEEILERIL 360 (367)
T ss_pred HHhHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999988665433 221 122344555556666666665553 22222 2233456666666665553
No 410
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=42.30 E-value=43 Score=31.13 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
.||+||-+++|||=+-..+.+.-+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f 25 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF 25 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 489999999999999988885433
No 411
>PRK09165 replicative DNA helicase; Provisional
Probab=42.25 E-value=1.1e+02 Score=32.80 Aligned_cols=123 Identities=20% Similarity=0.164 Sum_probs=65.4
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhc--C
Q 016228 248 QNLQKADIIL-SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSL--G 324 (393)
Q Consensus 248 ~~L~eADIVL-vGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~l--G 324 (393)
.||..-|+|+ .|-+++|||=+++-+|...-+--+-+..+... ...-+-.+--+|.|.++++.|.. |+-+. |
T Consensus 212 gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~--~~~~~g~~vl~fSlEMs~~ql~~----R~la~~s~ 285 (497)
T PRK09165 212 GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGS--KKAVNGGVVGFFSLEMSAEQLAT----RILSEQSE 285 (497)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhccccccccc--ccccCCCeEEEEeCcCCHHHHHH----HHHHHhcC
Confidence 4677777655 67889999999999984432222222222110 00000011237999999998875 33222 3
Q ss_pred CCCC--CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 325 FRDE--IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 325 l~~~--~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
++.. ...... .+.. ..+..|-..+.+. .+-+-|..+.+++++.+.|.++..+
T Consensus 286 v~~~~i~~~~l~-~~e~-~~l~~a~~~l~~~-~l~I~d~~~~ti~~i~~~ir~l~~~ 339 (497)
T PRK09165 286 ISSSKIRRGKIS-EEDF-EKLVDASQELQKL-PLYIDDTPALSISQLRARARRLKRQ 339 (497)
T ss_pred CCHHHHhcCCCC-HHHH-HHHHHHHHHHhcC-CeEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3210 000111 1111 1233333333443 5667778888999999998765543
No 412
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=42.09 E-value=15 Score=34.43 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
=|+|.|.|++||+=|++=|..+|++
T Consensus 20 GVLi~G~SG~GKS~lAl~Li~rGh~ 44 (171)
T PF07475_consen 20 GVLITGPSGIGKSELALELIKRGHR 44 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT-E
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCe
Confidence 3889999999999999999999984
No 413
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=42.08 E-value=21 Score=33.15 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
.+--.||+..+++.|.+ +||.+ +.....+.+-+.+ .+++-..-=-.||+|..+.||.|..|++.+
T Consensus 109 ~~vl~VgV~Cpleil~~--RE~~R--------gDR~~G~a~~q~~-----~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 109 LPVLFVGVRCPLEILER--RERAR--------GDRPIGLAAWQAE-----HVHEGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp S-EEEEEEE--HHHHHH--HHHHH--------TSSSTTHHHHHTT-----GGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred CceEEEEEECCHHHHHH--HHHhc--------CCcchHHHHHHHh-----hcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 33357999999997766 33432 1223334333333 222211111358999999999999998765
No 414
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=42.03 E-value=17 Score=30.09 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=21.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcC-ceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKG-YKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G-~KVANvP 283 (393)
.|+|+|.+.+|||=+.-.|.... -++.|.|
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~ 33 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIA 33 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCC
Confidence 48999999999997777776433 2345544
No 415
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=41.96 E-value=1.4e+02 Score=26.34 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC--CEEEEEcCCHHHHHHHHHH
Q 016228 106 GTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKA 183 (393)
Q Consensus 106 sTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~ 183 (393)
+.+.....-.+.++.|+. +++..++. -.+.+...+.++++...+ ++|+.+.....+. +.+.
T Consensus 12 ~~~~~~~~g~~~~~~~~g---------~~l~~~~~------~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~--~~~~ 74 (264)
T cd01537 12 PFFAQVLKGIEEAAKAAG---------YQVLLANS------QNDAEKQLSALENLIARGVDGIIIAPSDLTAPT--IVKL 74 (264)
T ss_pred hHHHHHHHHHHHHHHHcC---------CeEEEEeC------CCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh--HHHH
Confidence 344555555666666653 33444444 446666777777765444 6777665444443 4566
Q ss_pred HHHcCCCEeecchH
Q 016228 184 CELWGIPSTDVLGP 197 (393)
Q Consensus 184 ~~~~gi~~vDll~p 197 (393)
+.+.++|+|-+-..
T Consensus 75 l~~~~ip~v~~~~~ 88 (264)
T cd01537 75 ARKAGIPVVLVDRD 88 (264)
T ss_pred hhhcCCCEEEeccC
Confidence 67889999875443
No 416
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=41.94 E-value=16 Score=37.17 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhhhc------Cceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK------GYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~------G~KVANvP 283 (393)
++|.|.++||||=|...+|+. |.+|.-++
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 789999999999999988842 56665554
No 417
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=41.76 E-value=2.1e+02 Score=27.02 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEEccCCCCCCh------hhHHhhhcCc
Q 016228 255 IILSGVSRTGKTP------LSIYLAQKGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTP------lSmYLA~~G~ 277 (393)
++|.|++.+|||= +..||||-|.
T Consensus 33 ~~l~G~n~~GKstll~~i~~~~~la~~g~ 61 (222)
T cd03285 33 LIITGPNMGGKSTYIRQIGVIVLMAQIGC 61 (222)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhCC
Confidence 6999999999998 4578999994
No 418
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=41.52 E-value=35 Score=28.07 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+++|..++|||-+.-.|..+
T Consensus 6 i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 6 VAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999988743
No 419
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=41.48 E-value=86 Score=28.61 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=46.5
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHH
Q 016228 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPS 175 (393)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~e 175 (393)
.+++|..+| .|. -|+.+.+.+..-.|++ +++.+.-. + +.+.+.++++. --+||.+.-+.+
T Consensus 40 ~Rq~~~~~~-vg~~Ka~~~~~~l~~lnp~v------~i~~~~~~-------~-~~~~~~~~l~~----~DlVi~~~d~~~ 100 (174)
T cd01487 40 NRQQYFLSQ-IGEPKVEALKENLREINPFV------KIEAINIK-------I-DENNLEGLFGD----CDIVVEAFDNAE 100 (174)
T ss_pred hcccccHhh-CCChHHHHHHHHHHHHCCCC------EEEEEEee-------c-ChhhHHHHhcC----CCEEEECCCCHH
Confidence 355566544 564 3444444444444653 23222221 3 33455555533 249999999999
Q ss_pred HHHHHHHHHHHc-CCCEeec
Q 016228 176 MAESAKKACELW-GIPSTDV 194 (393)
Q Consensus 176 Lr~~l~~~~~~~-gi~~vDl 194 (393)
.|..+.+.|.+. ++|+|--
T Consensus 101 ~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 101 TKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred HHHHHHHHHHHHCCCCEEEE
Confidence 999887777776 9999854
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.42 E-value=84 Score=33.28 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|.|||++++|||=|.--||.
T Consensus 194 i~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999988884
No 421
>PHA00729 NTP-binding motif containing protein
Probab=41.42 E-value=14 Score=35.90 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=55.5
Q ss_pred cEEEEccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHH-HHHHHHhh-----cCCC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQS-IRKARARS-----LGFR 326 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~-G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~-IR~eRl~~-----lGl~ 326 (393)
-|+|.|.++||||=+++=||+. |.++. +|+ .+..-+ ++. .-++.+|.+.|.+ |+..+-.. +-++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~--~l~----~~~~~~--d~~-~~~~fid~~~Ll~~L~~a~~~~~~~dlLIID 89 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLN--NLS----TKDDAW--QYV-QNSYFFELPDALEKIQDAIDNDYRIPLIIFD 89 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcc--ccc----chhhHH--hcC-CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 5999999999999999999964 42211 222 112222 222 2467777776655 54433210 0010
Q ss_pred C--CCCCCCC-CHH--HHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHH
Q 016228 327 D--EIRSNYS-EMD--YVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLR 375 (393)
Q Consensus 327 ~--~~~S~YA-s~e--~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~ 375 (393)
+ ---+.|. ..+ .+..+|..| +.. .|-++=++..+.|++...+-+
T Consensus 90 d~G~~~~~~~wh~~~~~~yf~L~~a---LrS--R~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 90 DAGIWLSKYVWYEDYMKTFYKIYAL---IRT--RVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CCchhhcccchhhhccchHHHHHHH---HHh--hCcEEEEecCCHHHHHHHHHh
Confidence 0 0012221 111 222233222 222 367777888888887776554
No 422
>PRK06761 hypothetical protein; Provisional
Probab=41.36 E-value=29 Score=34.77 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-|++.|++++|||-++-.|++
T Consensus 5 lIvI~G~~GsGKTTla~~L~~ 25 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLND 25 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999993
No 423
>PRK10536 hypothetical protein; Provisional
Probab=41.24 E-value=16 Score=36.50 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=18.2
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
=++++|..+||||=|+..+|.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367779999999999999884
No 424
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=41.19 E-value=22 Score=41.14 Aligned_cols=103 Identities=20% Similarity=0.357 Sum_probs=58.9
Q ss_pred EEEEccCCCCCChhhH---Hhh-hcCceeeecc-----ccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCC
Q 016228 255 IILSGVSRTGKTPLSI---YLA-QKGYKVANVP-----IVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGF 325 (393)
Q Consensus 255 IVLvGVSRTsKTPlSm---YLA-~~G~KVANvP-----LVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl 325 (393)
+|+-|||++||+=|.+ |-- |+-|= -.++ +++..+ +++-++|-||.-.. .|.+.+ .+
T Consensus 29 ~v~TGvSGSGKSSLafDtl~aEgqRry~-Es~s~y~rq~l~~~~------~P~vd~i~gl~p~I----ai~Q~~---~~- 93 (943)
T PRK00349 29 VVFTGLSGSGKSSLAFDTIYAEGQRRYV-ESLSAYARQFLGQMD------KPDVDSIEGLSPAI----SIDQKT---TS- 93 (943)
T ss_pred EEEecCCCCCchhHHHHHHHHHHHHHHH-hhccHHHHHhhccCC------CCCcCeEcCCCceE----EEEecC---CC-
Confidence 6899999999999874 222 33221 1122 333333 23334555553221 122222 12
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE-----eCCCccHHHHHHHHHHHH
Q 016228 326 RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-----EVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 326 ~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVI-----DVT~kSIEEtAa~Il~~~ 377 (393)
.+..+....+-+=-+|-+-||.+. |.|+- .+...+.+++++.|+.+.
T Consensus 94 ----~n~RSTVgT~Tei~~~LrlLfar~-g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 145 (943)
T PRK00349 94 ----HNPRSTVGTVTEIYDYLRLLYARV-GKPHCPNCGRPIEAQTVSQMVDRVLELP 145 (943)
T ss_pred ----CCCCccchhHHHHHHHHHHHHHhc-CCCCCCCCCCCcccCCHHHHHHHHHhCC
Confidence 233444555555578999999995 85543 346678899999998754
No 425
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=41.09 E-value=29 Score=40.17 Aligned_cols=177 Identities=21% Similarity=0.213 Sum_probs=95.3
Q ss_pred EEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHH---hhCCC-------------
Q 016228 102 MVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQA---AKDGA------------- 165 (393)
Q Consensus 102 iVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a---~~~~~------------- 165 (393)
++|+.||.......++.--||-..+ .-..+...+.|-.+..| +. -.+...++.+ ++.++
T Consensus 44 LLs~~t~~lr~ac~~~~~l~~rale--lc~~v~l~rlpt~~~p~-~s--n~l~aalkr~qa~qrr~~~~~~~~~vkvE~~ 118 (898)
T KOG1051|consen 44 LLSSPTGILRRACIKSHPLQCRALE--LCFNVSLNRLPTSYGPP-VS--NALMAALKRAQAHQRRGCEEQQQQAVKVELE 118 (898)
T ss_pred HHcCCchHHHHHHHhcCcccHHHHH--HHHHHHHHhccCCCCCc-cc--hHhHHHHHHHHHHHHhcchhhccchhhHhHH
Confidence 5799999998888887745664332 00235556666622211 11 1222223221 22222
Q ss_pred -EEEEEcCCHHHHHHHHHHHHH-----------cCCCEeecchH--HHHHHHHH-hCCCCCCCCC-CCCCCCCCCcHHHH
Q 016228 166 -MLVYTLADPSMAESAKKACEL-----------WGIPSTDVLGP--ITEAIASH-LGVSPSGLPR-GAPGRNFPLSEEYF 229 (393)
Q Consensus 166 -iV~~Tlvd~eLr~~l~~~~~~-----------~gi~~vDll~p--~i~~Le~~-lG~~P~~~~~-~~pG~~~~ld~~YF 229 (393)
+|++++-||.+.+.++++.-. .|..-++..+| -...|+.+ ....|....+ ..|- ..+.++++-
T Consensus 119 ~li~silDdp~vsrv~reag~~s~~vK~~ve~~~g~~~~~~~~~~~~~~~L~~~~~dl~p~a~~gkldPv-igr~deeir 197 (898)
T KOG1051|consen 119 QLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQFRSPSRGPLWPLLFLENYGTDLTPRARQGKLDPV-IGRHDEEIR 197 (898)
T ss_pred hhheeeecCchHHHHHHHhcCChHHHHHHHHhhccccCCCCcCCccchhHHHhcccccChhhhccCCCCc-cCCchHHHH
Confidence 888999998998888876420 01122222333 23444442 2233321000 1111 112456666
Q ss_pred hhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecC
Q 016228 230 RRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTIN 308 (393)
Q Consensus 230 ~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTId 308 (393)
+=|+= +.-.+..|| ||||.++.|||=+.--||++.. .-.+|..|. ..|++-|.+-
T Consensus 198 Rvi~i----L~Rrtk~NP--------vLVG~~gvgktaiv~gla~ri~---------~G~vp~~l~---~~~l~~l~~g 252 (898)
T KOG1051|consen 198 RVIEI----LSRKTKNNP--------VLVGEPGVGKTAIVEGLAQRIA---------TGDVPETLK---DKKLIALDFG 252 (898)
T ss_pred HHHHH----HhccCCCCc--------eEEecCCCCchhHHHHHHHHhh---------cCCCCcccc---ccceEEEEhh
Confidence 65552 333444444 9999999999999999999843 246666663 3567777664
No 426
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.90 E-value=18 Score=35.15 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=26.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhh----hcCceeeecccc
Q 016228 251 QKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPIV 285 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANvPLV 285 (393)
...-++|.|.++||||=|..=+| ++|++|.=+++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 44569999999999999888777 457776655543
No 427
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=40.87 E-value=17 Score=39.34 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=34.1
Q ss_pred HhhhhhhhhhhhCC-CCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 229 FRRIEAIEFTIKQD-DGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 229 F~RIeAIEFAlkhD-DG~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
-++|+-+.-.++.. .|..+.. =++|-|+++||||=+---|| ..|++|.-.
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~----iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKR----ILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcc----eEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 35566665555532 2333222 36788999999999999999 679998753
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=40.76 E-value=14 Score=36.55 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=14.7
Q ss_pred EEEEccCCCCCChhhHHh
Q 016228 255 IILSGVSRTGKTPLSIYL 272 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYL 272 (393)
++++|+|+||||-+---|
T Consensus 31 v~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999875444
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.72 E-value=79 Score=34.15 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.2
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016228 254 DIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA 273 (393)
=+.|||+.++|||=|..=||
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 48899999999999998888
No 430
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=40.72 E-value=18 Score=32.74 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
--|++||.+++|||-+...|.+.-+
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~ 31 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTF 31 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999999988875433
No 431
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=40.71 E-value=51 Score=35.77 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=61.3
Q ss_pred EeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHH
Q 016228 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 182 (393)
Q Consensus 103 VSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~ 182 (393)
|.-.+|.|-..+.+++|-|=|++ ..+-- |++.|.+..+++.+ ..|-+|+.||--.+....+.+
T Consensus 366 v~~~~g~~~~~~l~~~LR~dPDv----------I~vGE------iRd~eta~~a~~aa-~tGHlv~tTlHa~~a~~~i~R 428 (564)
T TIGR02538 366 VNPKIGLTFAAALRSFLRQDPDI----------IMVGE------IRDLETAEIAIKAA-QTGHLVLSTLHTNDAPETLAR 428 (564)
T ss_pred eccccCCCHHHHHHHHhccCCCE----------EEeCC------CCCHHHHHHHHHHH-HcCCcEEEEeccCCHHHHHHH
Confidence 44566899999999999999873 33445 99999998888754 577789999999999999998
Q ss_pred HHHHcCCCEeecchHHHH
Q 016228 183 ACELWGIPSTDVLGPITE 200 (393)
Q Consensus 183 ~~~~~gi~~vDll~p~i~ 200 (393)
... +|++-..+-+.+..
T Consensus 429 l~~-lg~~~~~la~~l~~ 445 (564)
T TIGR02538 429 LVN-MGIAPFNIASSVNL 445 (564)
T ss_pred HHH-cCCCHHHHHHHHHH
Confidence 864 77775555444333
No 432
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=40.67 E-value=21 Score=36.32 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|||+|+--||||=|++=|| ..|--|-|+
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eIIs~ 34 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEIISL 34 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEec
Confidence 8999999999999999999 567666654
No 433
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=40.66 E-value=21 Score=32.98 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=24.0
Q ss_pred EEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016228 257 LSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 286 (393)
Q Consensus 257 LvGVSRTsKTPlSmYLA----~~G~KVANvPLVp 286 (393)
++|-|.||||=|.==|. .+|||||=|=-..
T Consensus 7 ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 7 IVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred EEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 68999999998877664 7899999764443
No 434
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=40.59 E-value=16 Score=37.98 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|.|.++||||-+.-.+|+.
T Consensus 182 vLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999953
No 435
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=40.52 E-value=1.1e+02 Score=26.53 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=37.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
-+|+.+=+.+..++.++..|+..+||++..-+ ....|....|.++
T Consensus 44 lViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~-t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 44 LVIISNNCPPIRRSEIEYYAMLSKTGVHHYAG-NNNDLGTACGRHF 88 (108)
T ss_pred EEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCC-CHHHHHHHhCCcc
Confidence 36778888899999999999999999986422 4588999999776
No 436
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.48 E-value=1.5e+02 Score=29.96 Aligned_cols=148 Identities=16% Similarity=0.237 Sum_probs=84.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-. .+..++.-...+..+ ++.++.+.||- -.+++++.+.|+++.++. +|+++ =
T Consensus 38 ~P~Laii~vg~d~a--S~~Yv~~k~k~~~~~----Gi~~~~~~l~~------~~~~~el~~~I~~LN~D~~V~GIlvqlP 105 (287)
T PRK14176 38 TPGLATILVGDDPA--SKMYVRLKHKACERV----GIRAEDQFLPA------DTTQEELLELIDSLNKRKDVHGILLQLP 105 (287)
T ss_pred CCeEEEEEECCCcc--hHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 45677888877653 344455544444432 35688888887 778999999998885443 56654 4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-.+.+....-+++ ||-|.|. +..| ++|.+. -.| ..| .||=..++|- |.
T Consensus 106 LP~~i~~~~i~~~I~p~KD---VDGl~~~N~g~l--~~g~~~-~~P-cTp--------------~av~~ll~~~-~i--- 160 (287)
T PRK14176 106 LPKHLDPQEAMEAIDPAKD---ADGFHPYNMGKL--MIGDEG-LVP-CTP--------------HGVIRALEEY-GV--- 160 (287)
T ss_pred CCCCCCHHHHHhccCcccc---ccccChhhhhhH--hcCCCC-CCC-CcH--------------HHHHHHHHHc-CC---
Confidence 421 122233433333333 3556553 2222 233221 111 122 2222223321 11
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
+|...++++||=|++==-|++++|.++|..|
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atV 191 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATV 191 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEE
Confidence 6777899999999955559999999998554
No 437
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=40.44 E-value=61 Score=33.32 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=20.8
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhhh
Q 016228 248 QNLQKADII-LSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 248 ~~L~eADIV-LvGVSRTsKTPlSmYLA~ 274 (393)
.||..-+++ |.|.+++|||=+++-+|.
T Consensus 190 ~G~~~G~l~vi~g~pg~GKT~~~l~~a~ 217 (434)
T TIGR00665 190 SGLQPSDLIILAARPSMGKTAFALNIAE 217 (434)
T ss_pred CCCCCCeEEEEEeCCCCChHHHHHHHHH
Confidence 356666655 468899999999998873
No 438
>CHL00181 cbbX CbbX; Provisional
Probab=40.39 E-value=16 Score=36.15 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
.++|.|.++||||-+.-.||+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999985
No 439
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=40.35 E-value=17 Score=35.63 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.4
Q ss_pred EEEEccCCCCCChhhH
Q 016228 255 IILSGVSRTGKTPLSI 270 (393)
Q Consensus 255 IVLvGVSRTsKTPlSm 270 (393)
+++.|||++|||=|..
T Consensus 24 ~~vtGvSGsGKStL~~ 39 (261)
T cd03271 24 TCVTGVSGSGKSSLIN 39 (261)
T ss_pred EEEECCCCCchHHHHH
Confidence 5899999999999875
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.35 E-value=1.2e+02 Score=30.04 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=17.8
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA 273 (393)
--+.++|.+++|||=+..=||
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999877666
No 441
>PTZ00035 Rad51 protein; Provisional
Probab=40.23 E-value=19 Score=36.57 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016228 249 NLQKADII-LSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eADIV-LvGVSRTsKTPlSmYLA 273 (393)
|+..-.|+ |.|.++||||-+|+.|+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~ 139 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLC 139 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHH
Confidence 66666665 89999999999999987
No 442
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=40.21 E-value=29 Score=39.54 Aligned_cols=96 Identities=26% Similarity=0.342 Sum_probs=60.6
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCE--eecchHHHHH-HHH----HhCCCCCCCCCCCCCCCCC------CcHHHHhhhhhh
Q 016228 169 YTLADPSMAESAKKACELWGIPS--TDVLGPITEA-IAS----HLGVSPSGLPRGAPGRNFP------LSEEYFRRIEAI 235 (393)
Q Consensus 169 ~Tlvd~eLr~~l~~~~~~~gi~~--vDll~p~i~~-Le~----~lG~~P~~~~~~~pG~~~~------ld~~YF~RIeAI 235 (393)
...+.|+..+...++++..|+.+ ||++-+=+.. +.. .+.+.+ .||+..- ...+....|-++
T Consensus 396 td~i~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~------~p~~~~h~~p~~g~~r~v~~~Il~~ 469 (864)
T TIGR02068 396 TDEIHPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNA------APGLRMHLAPSQGKPRNVARAIVDM 469 (864)
T ss_pred ccccCHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEEEEcC------CcchhhcccccCCCCeeHHHHHHHH
Confidence 55889999999999999877765 7887664432 111 122222 4554311 123344555443
Q ss_pred hhhhhCCCCCCCCCCCcCcEEEEccCCC-CCChhhHHhh----hcCceee
Q 016228 236 EFTIKQDDGALPQNLQKADIILSGVSRT-GKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 236 EFAlkhDDG~~p~~L~eADIVLvGVSRT-sKTPlSmYLA----~~G~KVA 280 (393)
=|. .+.+ ..+=+|||.+| |||-|+-+|+ +.|++|.
T Consensus 470 lfp-~~~~---------~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG 509 (864)
T TIGR02068 470 LFP-AEDD---------GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVG 509 (864)
T ss_pred hcc-cCCC---------CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEE
Confidence 333 1122 45668999999 9999999999 4688884
No 443
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=40.14 E-value=19 Score=32.33 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVA 280 (393)
|++-|..+||||-++=.|++ .|+.+.
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 78999999999999999995 565433
No 444
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=40.14 E-value=1.1e+02 Score=29.30 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccC-CCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCH
Q 016228 96 EGKSIYMVSDGTGWTAEHAVNAALGQF-EHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADP 174 (393)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~l~~AaLaQF-~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~ 174 (393)
-.+.+++=.+-.|..-..+++..+.+. |. +++..+.. --+.+.+.+++ +..-+|+..+.|-
T Consensus 70 L~rq~~~~~~dig~~Ka~~a~~~l~~ln~~--------v~v~~~~~------~l~~~~~~~~~----~~~d~v~d~~dn~ 131 (254)
T COG0476 70 LQRQFLFTEADVGKPKAEVAAKALRKLNPL--------VEVVAYLE------RLDEENAEELI----AQFDVVLDCTDNF 131 (254)
T ss_pred cCceeeecccccCCcHHHHHHHHHHHhCCC--------CeEEEeec------ccChhhHHHHh----ccCCEEEECCCCH
Confidence 457777778888884444444455555 43 34444433 22454444443 3445999999999
Q ss_pred HHHHHHHHHHHHcCCCEeec
Q 016228 175 SMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDl 194 (393)
+-|..+..+|..+++|+++.
T Consensus 132 ~~r~~iN~~~~~~~~pli~~ 151 (254)
T COG0476 132 ETRYLINDACVKLGIPLVHG 151 (254)
T ss_pred HHHHHHHHHHHHhCCCeEee
Confidence 99999999999999999883
No 445
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.05 E-value=2e+02 Score=29.06 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=85.4
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|--. +...++.-...+... ++.++.+.||- -.+++++.++|+++.++. +|+++ =
T Consensus 31 ~P~La~I~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIivq~P 98 (282)
T PRK14180 31 TPKLVAIIVGNDPA--SKTYVASKEKACAQV----GIDSQVITLPE------HTTESELLELIDQLNNDSSVHAILVQLP 98 (282)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 45567777876654 344555555555432 35688888887 788899999998885543 55554 4
Q ss_pred cC-CHHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LA-DPSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lv-d~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|- .-+-.+.+....-+++ ||-|.|. +..|. .|..+.-.| ..| .||=.=+++- |.
T Consensus 99 lP~~i~~~~i~~~I~p~KD---VDGl~~~n~g~l~--~g~~~~~~P-cTp--------------~aii~lL~~y-~i--- 154 (282)
T PRK14180 99 LPAHINKNNVIYSIKPEKD---VDGFHPTNVGRLQ--LRDKKCLES-CTP--------------KGIMTMLREY-GI--- 154 (282)
T ss_pred CCCCCCHHHHHhhcCcccc---ccccChhhHHHHh--cCCCCCcCC-CCH--------------HHHHHHHHHh-CC---
Confidence 43 1122233333333333 3556554 33332 341111101 122 1221112210 22
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
+|...++++||=|.+==-|++++|.++|..|
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATV 185 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATV 185 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence 4667789999999998889999999998555
No 446
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=40.00 E-value=26 Score=38.60 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
|+|+|.++||||-++-.|| +.|..
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999 44543
No 447
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.99 E-value=21 Score=37.76 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=17.8
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA 273 (393)
-=|+|+|++++|||=|..=||
T Consensus 207 ~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999887777
No 448
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=39.96 E-value=22 Score=35.04 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=25.5
Q ss_pred cEEEEccCCCCCChhhHHhh-hcC--ceeeeccccC
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKG--YKVANVPIVM 286 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G--~KVANvPLVp 286 (393)
.++|-|+.++|||=|+.-+| ..| ++..|=|.+.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 48999999999999999999 444 5666666554
No 449
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=39.89 E-value=20 Score=30.86 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
|++||-+.+|||=|...|.+..+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~ 25 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999877765433
No 450
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=39.84 E-value=1e+02 Score=31.44 Aligned_cols=79 Identities=24% Similarity=0.168 Sum_probs=54.6
Q ss_pred CcEEEEecChhHHHHHHHH-HHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKA-RARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~e-Rl~~lGl~~~~~S~YAs~-e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
--.|=|++.-+.+++=|=. |..-.-... ++..|.+. +.++.=-+|-.+.-+++ |+||||. --|+||...||+.+
T Consensus 210 ~~~~~l~i~dee~Hr~RF~~R~~~t~~~r-p~~Ryl~yf~EiR~I~Dyl~~~Are~-gVPvI~n--~di~etv~~il~~i 285 (299)
T COG2074 210 VFMFMLYIADEELHRERFYDRIRYTHASR-PGGRYLEYFKEIRTIHDYLVERAREH-GVPVIEN--DDIDETVDRILEDI 285 (299)
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHHHHHHHHhc-CCCeecc--ccHHHHHHHHHHHH
Confidence 3478899999999886643 332221122 46677663 44555556777777887 9999965 45899999999999
Q ss_pred hhccc
Q 016228 378 HDRKH 382 (393)
Q Consensus 378 ~~r~~ 382 (393)
.++-.
T Consensus 286 ~~~~~ 290 (299)
T COG2074 286 RKRTV 290 (299)
T ss_pred HHHHH
Confidence 77643
No 451
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.79 E-value=58 Score=33.21 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=48.2
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHHHHHHHHh
Q 016228 255 IILSGVSRTGKTPLS----IYLAQKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR 321 (393)
Q Consensus 255 IVLvGVSRTsKTPlS----mYLA~~G~KVANvPLVp--------~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~ 321 (393)
++..|=.+.|||=+| .|||..|.||.=+=.=| +.+++....++. +-+.|+-|||+.+.+=..+.++
T Consensus 5 v~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~-~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 5 VFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG-PNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC-CCCceeeecHHHHHHHHHHHHH
Confidence 456799999998754 89999998865443223 456666666666 4488999999998876655554
No 452
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=39.70 E-value=23 Score=31.52 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ--KGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~--~G~KVAN 281 (393)
++|+|-+++|||=+.-.|.+ +|++++-
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~~~~~~~~ 31 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQHGRKIAV 31 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcccCCcEEE
Confidence 68999999999999998873 4777754
No 453
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=39.69 E-value=21 Score=35.79 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=20.7
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016228 249 NLQKADII-LSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eADIV-LvGVSRTsKTPlSmYLA 273 (393)
|+..-+|+ |.|.+++|||.+|+-||
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~ 117 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLA 117 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHH
Confidence 55556655 88999999999999887
No 454
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.46 E-value=1.4e+02 Score=27.25 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=53.9
Q ss_pred eeEEEccCCccccCcCCHHHHHHHHHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 133 VNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 133 ~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
+....+.. -.+.++..+.++.+...+ ++|+++.......+.+++. .+.|+|+|-+-.+ .
T Consensus 32 ~~~~~~~~------~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~-~~~~ipvv~~~~~------------~ 92 (271)
T cd06321 32 VKVTVVSA------DYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRA-QAAGIVVVAVDVA------------A 92 (271)
T ss_pred eEEEEccC------CCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHH-HHCCCeEEEecCC------------C
Confidence 55555544 456666667777654433 7888764333355666554 5678999887322 1
Q ss_pred CCCCCCCCCCCCCCc-HHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCC
Q 016228 211 SGLPRGAPGRNFPLS-EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSR 262 (393)
Q Consensus 211 ~~~~~~~pG~~~~ld-~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSR 262 (393)
. +....+. ++|--=-.|.+|.+++=.|. .+|.++|-..
T Consensus 93 ~-------~~~~~V~~d~~~~g~~~~~~l~~~~~g~-------~~i~~i~g~~ 131 (271)
T cd06321 93 E-------GADATVTTDNVQAGEISCQYLADRLGGK-------GNVAILNGPP 131 (271)
T ss_pred C-------CccceeeechHHHHHHHHHHHHHHhCCC-------ceEEEEeCCC
Confidence 0 1011233 34444455677777653232 3688886443
No 455
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=39.40 E-value=20 Score=30.97 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G 276 (393)
|+++|.+++|||=+.-.|.+.-
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~~ 27 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDS 27 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhCc
Confidence 8999999999999988887543
No 456
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.28 E-value=2.2e+02 Score=28.78 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=83.0
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.+..|.|.-+ +...++.-...+..+ ++.++.+.||- --+++++.+.|++..++. +|+++ =
T Consensus 32 ~p~Laii~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~------~~~~~~l~~~I~~lN~d~~V~GIlvq~P 99 (285)
T PRK14189 32 QPGLAVILVGDNPA--SQVYVRNKVKACEDN----GFHSLKDRYPA------DLSEAELLARIDELNRDPKIHGILVQLP 99 (285)
T ss_pred CCeEEEEEeCCCch--HHHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHcCCCCCCeEEEeCC
Confidence 45677888877664 344444444444332 35678888887 678899999999875443 55554 4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LAD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|-. -+-.+.+....-+++ ||=|.|. +..|. .|.+. -.| ..|-..-.+-+.| | -
T Consensus 100 lp~~i~~~~i~~~I~p~KD---VDGl~~~n~g~l~--~~~~~-~~P-cTp~aii~lL~~~---------------~---i 154 (285)
T PRK14189 100 LPKHIDSHKVIEAIAPEKD---VDGFHVANAGALM--TGQPL-FRP-CTPYGVMKMLESI---------------G---I 154 (285)
T ss_pred CCCCCCHHHHHhhcCcccC---cccCChhhhhHhh--CCCCC-CcC-CCHHHHHHHHHHc---------------C---C
Confidence 421 122223333333333 3556654 22221 23221 101 1221111111222 1 1
Q ss_pred CCCcCcEEEEccCCC-CCChhhHHhhhcCceee
Q 016228 249 NLQKADIILSGVSRT-GKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 249 ~L~eADIVLvGVSRT-sKTPlSmYLA~~G~KVA 280 (393)
++....+++||-|.+ || |++++|.++|..|.
T Consensus 155 ~l~Gk~vvViGrs~iVGk-Pla~lL~~~~atVt 186 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGK-PMAMLLLQAGATVT 186 (285)
T ss_pred CCCCCEEEEECCCCccHH-HHHHHHHHCCCEEE
Confidence 667789999999999 65 99999999997775
No 457
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=39.21 E-value=22 Score=30.59 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
|+++|-+++|||=+...|.+..+.
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~~~ 26 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFP 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC
Confidence 899999999999998877755553
No 458
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.17 E-value=4.2e+02 Score=26.72 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=83.4
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-Ec
Q 016228 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-TL 171 (393)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-Tl 171 (393)
..+.++.|.|.-.. ...++.-...+..+ ++.++.+.||- --+++++.+.|+++.++. +|+++ =|
T Consensus 33 P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~d~~V~GIlvqlPL 100 (278)
T PRK14172 33 PKIASILVGNDGGS--IYYMNNQEKVANSL----GIDFKKIKLDE------SISEEDLINEIEELNKDNNVHGIMLQLPL 100 (278)
T ss_pred ceEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEcCCC
Confidence 45778888877543 33444444444332 35688888887 778889999998875443 56665 44
Q ss_pred CC-HHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCC
Q 016228 172 AD-PSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQN 249 (393)
Q Consensus 172 vd-~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~ 249 (393)
-. -+-.+.+....-+++ ||-|.|. +..|. .|.+. -.| ..|- ||=.=++|- |. +
T Consensus 101 P~~~~~~~i~~~I~p~KD---VDGl~~~n~g~l~--~g~~~-~~P-cTp~--------------av~~lL~~~-~i---~ 155 (278)
T PRK14172 101 PKHLDEKKITNKIDANKD---IDCLTFISVGKFY--KGEKC-FLP-CTPN--------------SVITLIKSL-NI---D 155 (278)
T ss_pred CCCCCHHHHHhccCcccc---cCccCHhhHHHHh--CCCCC-CcC-CCHH--------------HHHHHHHHh-CC---C
Confidence 21 122233433333433 3666665 22222 33221 111 1221 111111111 11 6
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 250 LQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 250 L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
|...++++||=|.+==-||+++|.++|..|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~AtV 185 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKPVAQLLLNENATV 185 (278)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEE
Confidence 777899999999999999999999998555
No 459
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=39.10 E-value=21 Score=29.82 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-GYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-G~KVANvP 283 (393)
|+++|.+++|||-+.-.|.+. ...+-+.|
T Consensus 5 i~i~G~~~~GKstli~~l~~~~~~~~~~~~ 34 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGEERVIVSDIA 34 (174)
T ss_pred EEEEcCCCCCHHHHHHHHhCccceeccCCC
Confidence 899999999999998888643 33344444
No 460
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=39.06 E-value=20 Score=31.62 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~ 274 (393)
--|+|+|.+++|||-|-.+|..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~ 35 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL 35 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4599999999999999988864
No 461
>PRK13975 thymidylate kinase; Provisional
Probab=39.06 E-value=17 Score=32.48 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~ 277 (393)
|++.|+.++|||=++--||. .+.
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 89999999999999999994 453
No 462
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=39.04 E-value=56 Score=31.79 Aligned_cols=158 Identities=16% Similarity=0.285 Sum_probs=85.5
Q ss_pred EEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCcccc-CcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHH
Q 016228 102 MVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFC-QIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 180 (393)
Q Consensus 102 iVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~-~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l 180 (393)
||+| |.=.+.+...+...|+.+ ..+.+..+|- .+| ||++. ++.|.++.+-+-+|.|++ +|+|--.|
T Consensus 2 vi~~--G~yGeR~~~~i~~~~~~~-----~~v~~~~~p~--~l~efId~p---ee~Lp~i~~~Dl~I~y~l-HPDl~~~l 68 (217)
T PF02593_consen 2 VIYD--GKYGERVIENIKNYFDFC-----RSVIVYEIPE--DLPEFIDDP---EEYLPKIPEADLLIAYGL-HPDLTYEL 68 (217)
T ss_pred eeee--CcchHHHHHHHHhcCCCC-----ceEEEEeCCc--cccccccCh---HHHccCCCCCCEEEEecc-CchhHHHH
Confidence 4555 777788888888877643 1255666664 222 26655 344555444444555555 88888888
Q ss_pred HHHHHHcCCCEeec--chH------HHHHHHHHhCCCCCCCCCCCCCCCCCCc-------HHHHhhhhhhhhhhhCCCCC
Q 016228 181 KKACELWGIPSTDV--LGP------ITEAIASHLGVSPSGLPRGAPGRNFPLS-------EEYFRRIEAIEFTIKQDDGA 245 (393)
Q Consensus 181 ~~~~~~~gi~~vDl--l~p------~i~~Le~~lG~~P~~~~~~~pG~~~~ld-------~~YF~RIeAIEFAlkhDDG~ 245 (393)
-+.|++.|+..+=+ ..| -+....+.+|+.-. .|-..-.|+ ++|.+++=.=+|-|.-+||+
T Consensus 69 ~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~-----~P~~~CsL~~~~~p~i~~F~~~fGkP~~ei~v~~~~ 143 (217)
T PF02593_consen 69 PEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVE-----FPKPFCSLEENGNPQIDEFAEYFGKPKVEIEVENGK 143 (217)
T ss_pred HHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceee-----cCccccccCCCCChhHHHHHHHhCCceEEEEecCCc
Confidence 88888888887722 111 34445555554421 111112222 44555544455666666664
Q ss_pred CCCCCCcCcEEEEccCCCCCChhhHHhh--hcCceeeeccccC
Q 016228 246 LPQNLQKADIILSGVSRTGKTPLSIYLA--QKGYKVANVPIVM 286 (393)
Q Consensus 246 ~p~~L~eADIVLvGVSRTsKTPlSmYLA--~~G~KVANvPLVp 286 (393)
= .+++|+ ==|=|| -..|.| -.|..+-+.+..-
T Consensus 144 I----~~V~Vl--R~aPCG---sT~~vAk~l~G~~~~d~~~~~ 177 (217)
T PF02593_consen 144 I----KDVKVL--RSAPCG---STWFVAKRLIGKEVEDAPEKA 177 (217)
T ss_pred E----EEEEEE--ecCCCc---cHHHHHHHhcCCccchhhhhh
Confidence 2 334333 122233 336666 2466666555443
No 463
>PLN02422 dephospho-CoA kinase
Probab=39.02 E-value=22 Score=34.49 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
|.|.|-.+||||=.|=+|+.+|+.+.|---+
T Consensus 4 igltG~igsGKstv~~~l~~~g~~~idaD~~ 34 (232)
T PLN02422 4 VGLTGGIASGKSTVSNLFKSSGIPVVDADKV 34 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEehhHH
Confidence 7889999999999999999999999865443
No 464
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=38.85 E-value=61 Score=34.96 Aligned_cols=108 Identities=23% Similarity=0.199 Sum_probs=65.4
Q ss_pred CcCCHHHHHHHHHHHhhCCCEEEE-EcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 016228 146 QIDDVEQLMVIIKQAAKDGAMLVY-TLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPL 224 (393)
Q Consensus 146 ~V~t~e~l~~ii~~a~~~~~iV~~-Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~l 224 (393)
.|.+.+.+.+.| -.||+|=- -+.+.++.+.+.+. --.-..|.+.|+..- ++|
T Consensus 122 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~w------------~~~~~~~~~~~~~~~-----------~~L 174 (460)
T PLN03046 122 LVSSVQDLYEFI----CSGPLVDKIGYTPEKIAQSIDKW------------LLYGSQLCRLFQLNE-----------LKL 174 (460)
T ss_pred ccccHHHHHHHH----hcCccchhccCCHHHHHHHHHHH------------HHHHHHHHHHhcccc-----------ccC
Confidence 377777776664 45666542 34445555544433 234567788888664 578
Q ss_pred cHHHHhhhhhhhh-------------hhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016228 225 SEEYFRRIEAIEF-------------TIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVP 283 (393)
Q Consensus 225 d~~YF~RIeAIEF-------------AlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANvP 283 (393)
++.|-.|+...=. .-++-+|...+-+- |-|.|.|+||||=++-.|. ..|++++-+.
T Consensus 175 ~~~~~~~~~~~ylPl~~w~~~~i~~h~~~~~~~~~~~PlI---IGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvIS 247 (460)
T PLN03046 175 TEPQKARIYHYYIPVFIWCEDQIAEHRSKFKDGDDIPPLV---IGFSAPQGCGKTTLVFALDYLFRVTGRKSATLS 247 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEE---EEEECCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 8888888773211 11222332222232 5589999999999998886 2477777764
No 465
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.72 E-value=92 Score=31.67 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=84.1
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-.. ...++.-...+..+ ++.++.+.||- -.|++++.+.|+++.++. +|+++ =
T Consensus 33 ~P~LaiI~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~t~~~l~~~I~~lN~D~~V~GIlvqlP 100 (301)
T PRK14194 33 EPALAVILVGNDPAS--QVYVRNKILRAEEA----GIRSLEHRLPA------DTSQARLLALIAELNADPSVNGILLQLP 100 (301)
T ss_pred CCeEEEEEeCCChhH--HHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHcCCCCCCeEEEeCC
Confidence 456778888776543 33333333333221 35677888877 778999999998885544 56665 4
Q ss_pred cC-CHHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LA-DPSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lv-d~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|- .-+-.+.+....-+++ ||=|.|. +..| +.|.+.. .| ..|-....|-+.| |.
T Consensus 101 LP~~i~~~~i~~~I~p~KD---VDGl~~~N~g~l--~~~~~~~-~P-cTp~aii~lL~~~---------------~i--- 155 (301)
T PRK14194 101 LPAHIDEARVLQAINPLKD---VDGFHSENVGGL--SQGRDVL-TP-CTPSGCLRLLEDT---------------CG--- 155 (301)
T ss_pred CCCCCCHHHHHhccCchhc---cCccChhhhhHH--hcCCCCC-CC-CcHHHHHHHHHHh---------------CC---
Confidence 32 1122223333333333 3666665 2222 1332211 11 1221111122222 22
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCceeeec
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKVANV 282 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANv 282 (393)
+|...+|++||-|..==.|++++|.++|+.|.=+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~ 189 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVV 189 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 5667789999999777779999999999877543
No 466
>PRK06921 hypothetical protein; Provisional
Probab=38.51 E-value=20 Score=35.00 Aligned_cols=48 Identities=31% Similarity=0.362 Sum_probs=32.5
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----c-Cceeeeccc
Q 016228 234 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----K-GYKVANVPI 284 (393)
Q Consensus 234 AIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~----~-G~KVANvPL 284 (393)
|.+|+-.+++=.... .-=++|.|.++||||=|+.=+|+ + |++|.=++.
T Consensus 102 ~~~~~~~f~~~~~~~---~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 102 AVEYVKDFEKIQESR---KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred HHHHHHHHHHhcccC---CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 456766555311000 12389999999999999988774 4 888877775
No 467
>PTZ00258 GTP-binding protein; Provisional
Probab=38.50 E-value=22 Score=37.21 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
-|.|||...+|||-|==-|.+....++|||.+-
T Consensus 23 kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftT 55 (390)
T PTZ00258 23 KMGIVGLPNVGKSTTFNALCKQQVPAENFPFCT 55 (390)
T ss_pred EEEEECCCCCChHHHHHHHhcCcccccCCCCCc
Confidence 489999999999999888888789999999974
No 468
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=38.47 E-value=21 Score=30.76 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=21.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
|+++|-+++|||-+--.|.+.-+..+
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~~~~~ 29 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFTSA 29 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 89999999999998888876555433
No 469
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=38.37 E-value=17 Score=32.25 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|.|..|+|||=|.-++.+.
T Consensus 23 ~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 23 ILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCcCCHHHHHHHHHHH
Confidence 778899999999999988853
No 470
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.26 E-value=2.1e+02 Score=28.94 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=83.4
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-
Q 016228 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY- 169 (393)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~- 169 (393)
....+.++.|.|--+. ...++.-...+..+ ++.++.+.||- --|++++.+.|+++.++. +|+++
T Consensus 25 ~~P~LaiI~vg~d~as--~~Yv~~k~k~~~~~----Gi~~~~~~l~~------~~t~~el~~~I~~lN~d~~V~GIlvql 92 (287)
T PRK14181 25 TAPGLAVVLIGNDPAS--EVYVGMKVKKATDL----GMVSKAHRLPS------DATLSDILKLIHRLNNDPNIHGILVQL 92 (287)
T ss_pred CCCcEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEcC
Confidence 3556788888877654 33444444444332 35678888887 778999999999885443 66665
Q ss_pred EcC-CHHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCC
Q 016228 170 TLA-DPSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALP 247 (393)
Q Consensus 170 Tlv-d~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p 247 (393)
=|- .-+-.+.+....-+++ ||=|.|. +..| ++|..+.-.| ..|-....|-+.| |.
T Consensus 93 PlP~~i~~~~i~~~I~p~KD---VDGl~p~n~g~l--~~g~~~~~~P-cTp~avi~lL~~~---------------~i-- 149 (287)
T PRK14181 93 PLPKHLDAQAILQAISPDKD---VDGLHPVNMGKL--LLGETDGFIP-CTPAGIIELLKYY---------------EI-- 149 (287)
T ss_pred CCCCCcCHHHHHhccCcccC---cccCChhhHHHH--hcCCCCCCCC-CCHHHHHHHHHHh---------------CC--
Confidence 332 1122223333333333 3556553 2222 2454221111 1221111222222 22
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcC
Q 016228 248 QNLQKADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 248 ~~L~eADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
+|...++++||=|.+==-||+++|.++|
T Consensus 150 -~l~Gk~vvViGrS~iVGkPla~lL~~~~ 177 (287)
T PRK14181 150 -PLHGRHVAIVGRSNIVGKPLAALLMQKH 177 (287)
T ss_pred -CCCCCEEEEECCCccchHHHHHHHHhCc
Confidence 5667789999999998889999999983
No 471
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=38.25 E-value=15 Score=40.31 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=17.4
Q ss_pred CcCcEEEEccCCCCCChhhHHh
Q 016228 251 QKADIILSGVSRTGKTPLSIYL 272 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYL 272 (393)
.++ ||+.|.|++|||..+-++
T Consensus 85 ~Q~-IiisGeSGsGKTe~~k~i 105 (689)
T PF00063_consen 85 NQS-IIISGESGSGKTETSKLI 105 (689)
T ss_dssp EEE-EEEEESTTSSHHHHHHHH
T ss_pred ccc-eeeccccccccccchHHH
Confidence 366 999999999999987543
No 472
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=38.21 E-value=22 Score=30.01 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=20.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
-|+|+|.+.+|||.|--=|-+..+.....|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~ 31 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQA 31 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCC
Confidence 489999999999998655544444443333
No 473
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.94 E-value=1.2e+02 Score=30.49 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=85.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-.. ...++.-......+ ++.++.+.||- -.|++++.+.|+++.++. +|+++ =
T Consensus 30 ~P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~t~~~l~~~I~~lN~D~~V~GIivq~P 97 (282)
T PRK14166 30 ESCLAVILVGDNPAS--QTYVKSKAKACEEC----GIKSLVYHLNE------NTTQNELLALINTLNHDDSVHGILVQLP 97 (282)
T ss_pred CceEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 456778888876653 34444444444432 35677778876 668888999998875443 56665 4
Q ss_pred cC-CHHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LA-DPSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lv-d~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|- .-+-.+.++...-+++| |-|.|. +..| +.|..+.-.| ..| .|+=.=++|- |.
T Consensus 98 LP~~i~~~~i~~~I~p~KDV---DGl~~~N~g~l--~~g~~~~~~P-cTp--------------~avi~lL~~y-~i--- 153 (282)
T PRK14166 98 LPDHICKDLILESIISSKDV---DGFHPINVGYL--NLGLESGFLP-CTP--------------LGVMKLLKAY-EI--- 153 (282)
T ss_pred CCCCCCHHHHHhccCcccCc---ccCChhhhHHH--hcCCCCCCcC-CCH--------------HHHHHHHHHh-CC---
Confidence 43 22333344444444433 666654 2222 2342221111 122 1111112211 22
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
++...++++||=|.+-=-|++++|.++|.-|.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt 185 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVS 185 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 56778999999999988999999999886664
No 474
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=37.93 E-value=20 Score=35.35 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
.++|.|.+|||||=+..++++
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998873
No 475
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=37.92 E-value=26 Score=34.65 Aligned_cols=95 Identities=12% Similarity=0.234 Sum_probs=59.7
Q ss_pred HHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhh
Q 016228 154 MVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIE 233 (393)
Q Consensus 154 ~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIe 233 (393)
.+++++.. .+.+++.-+.++++.+ .|+++||.++|+++ .+.+ +. .......+ -
T Consensus 84 ~~~l~~~~-~~~~~~~G~~~~~l~~----~a~~~gi~v~~~~~--~~~v---------------a~-~n~~~~Ae----~ 136 (287)
T TIGR02853 84 PELLESTK-GHCTIYVGISNPYLEQ----LAADAGVKLIELFE--RDDV---------------AI-YNSIPTAE----G 136 (287)
T ss_pred HHHHHhcC-CCCEEEEecCCHHHHH----HHHHCCCeEEEEEe--ccce---------------EE-EccHhHHH----H
Confidence 34555554 4677788888887764 88899999999988 2111 11 11111111 1
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 234 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 234 AIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
||..++++ ...+|...-++++|--|.|+ .+...|+.+|.+|.
T Consensus 137 ai~~al~~----~~~~l~gk~v~IiG~G~iG~-avA~~L~~~G~~V~ 178 (287)
T TIGR02853 137 AIMMAIEH----TDFTIHGSNVMVLGFGRTGM-TIARTFSALGARVF 178 (287)
T ss_pred HHHHHHHh----cCCCCCCCEEEEEcChHHHH-HHHHHHHHCCCEEE
Confidence 23334433 22367778899999999995 57778888897754
No 476
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=37.83 E-value=22 Score=33.86 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=22.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
|.+.|=-++|||=+|.-|| ++|+||.=+
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5567999999999888776 789998644
No 477
>PRK04195 replication factor C large subunit; Provisional
Probab=37.68 E-value=22 Score=37.33 Aligned_cols=29 Identities=34% Similarity=0.546 Sum_probs=24.1
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
=++|.|.++||||=+.-.|| ..|+.+..+
T Consensus 41 ~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 38999999999999999999 577766543
No 478
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=37.61 E-value=24 Score=35.49 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016228 249 NLQKADII-LSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eADIV-LvGVSRTsKTPlSmYLA 273 (393)
|+..--|+ |.|.++||||-+|+-||
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla 117 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLC 117 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHH
Confidence 34444455 89999999999999988
No 479
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=37.61 E-value=20 Score=33.10 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|.|.++||||=|...+++.
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988853
No 480
>PRK07877 hypothetical protein; Provisional
Probab=37.52 E-value=95 Score=35.16 Aligned_cols=78 Identities=12% Similarity=-0.018 Sum_probs=54.3
Q ss_pred EEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHH
Q 016228 99 SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAE 178 (393)
Q Consensus 99 ~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~ 178 (393)
.+|-.+|=----++.+++.+..-.|+ +++..|+. +| +.+.+.++++.. -+||--+-|.+.|-
T Consensus 150 q~~~~~diG~~Kv~~a~~~l~~inp~--------i~v~~~~~-----~i-~~~n~~~~l~~~----DlVvD~~D~~~~R~ 211 (722)
T PRK07877 150 VPAGVFDLGVNKAVVAARRIAELDPY--------LPVEVFTD-----GL-TEDNVDAFLDGL----DVVVEECDSLDVKV 211 (722)
T ss_pred ccCChhhcccHHHHHHHHHHHHHCCC--------CEEEEEec-----cC-CHHHHHHHhcCC----CEEEECCCCHHHHH
Confidence 45666773234566666666666665 34444443 14 467777776543 49999999999999
Q ss_pred HHHHHHHHcCCCEeec
Q 016228 179 SAKKACELWGIPSTDV 194 (393)
Q Consensus 179 ~l~~~~~~~gi~~vDl 194 (393)
.+.++|.++|||+|--
T Consensus 212 ~ln~~a~~~~iP~i~~ 227 (722)
T PRK07877 212 LLREAARARRIPVLMA 227 (722)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999998753
No 481
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=37.46 E-value=19 Score=36.94 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=29.8
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 248 QNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 248 ~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
.+|.--.|..-|.++||||=+.-=|||. +|+||++
T Consensus 147 g~WAPknVLFyGppGTGKTm~Akalane----~kvp~l~ 181 (368)
T COG1223 147 GDWAPKNVLFYGPPGTGKTMMAKALANE----AKVPLLL 181 (368)
T ss_pred cccCcceeEEECCCCccHHHHHHHHhcc----cCCceEE
Confidence 3555566899999999999999999987 7899886
No 482
>CHL00095 clpC Clp protease ATP binding subunit
Probab=37.44 E-value=15 Score=41.35 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=22.0
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..--+||+|.++||||=+.-.||+.
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999999975
No 483
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.37 E-value=3.7e+02 Score=27.31 Aligned_cols=146 Identities=18% Similarity=0.248 Sum_probs=82.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEE-E
Q 016228 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVY-T 170 (393)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~-T 170 (393)
...+.++.|.|.-+. ...++.-...+..+ ++.++.+.||. -.+++++.+.|+++.++. +|+++ =
T Consensus 31 ~P~LaiI~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIlvqlP 98 (293)
T PRK14185 31 RPHLAAILVGHDGGS--ETYVANKVKACEEC----GFKSSLIRYES------DVTEEELLAKVRELNQDDDVDGFIVQLP 98 (293)
T ss_pred CCeEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 456778888777653 34444444444332 35677788887 778899999998885443 56655 3
Q ss_pred cC-CHHHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LA-DPSMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lv-d~eLr~~l~~~~~~~gi~~vDll~p~-i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
|- .-+-.+.+....-+++ ||=|.|. +..|. .|. |.-.| ..|-....|-+.| |.
T Consensus 99 LP~~i~~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~-~~~~P-cTp~av~~lL~~~---------------~i--- 153 (293)
T PRK14185 99 LPKHISEQKVIEAIDYRKD---VDGFHPINVGRMS--IGL-PCFVS-ATPNGILELLKRY---------------HI--- 153 (293)
T ss_pred CCCCCCHHHHHhccCcccC---cCCCCHhhHHHHh--CCC-CCCCC-CCHHHHHHHHHHh---------------CC---
Confidence 32 1122223333333333 4667665 33332 232 21111 1221111111211 11
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCc
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
.|...++|+||=|.+==-|++++|.++||
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~ 182 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAY 182 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCC
Confidence 36667899999999988999999999874
No 484
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=37.32 E-value=1.6e+02 Score=30.20 Aligned_cols=90 Identities=13% Similarity=0.040 Sum_probs=54.8
Q ss_pred EEEEEeCC-hHH-HHHHHHHHHHccCCCCcccCccceeEEE--ccCCc------ccc-CcCCHHHHHHHHHHHhhCCCEE
Q 016228 99 SIYMVSDG-TGW-TAEHAVNAALGQFEHCLVDRNCAVNTHL--FSGLQ------QFC-QIDDVEQLMVIIKQAAKDGAML 167 (393)
Q Consensus 99 ~IfiVSDs-TGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~--~p~~~------~~~-~V~t~e~l~~ii~~a~~~~~iV 167 (393)
.+|-.+|. .|. -|+.+++.+..-+|+++ ++.+. .|+.- .++ .-.+.+.+.+++++. -+|
T Consensus 43 ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~------v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~----DvV 112 (307)
T cd01486 43 SLFTFEDCKGGKPKAEAAAERLKEIFPSID------ATGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDH----DVI 112 (307)
T ss_pred cccccchhhcCccHHHHHHHHHHHHCCCcE------EEEeeeeccccccccccccccccccCHHHHHHHHhhC----CEE
Confidence 34556662 453 46666666666678743 33222 22100 000 013455566665443 378
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCEeecchHH
Q 016228 168 VYTLADPSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 168 ~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
|-.+-+.+-|-.+...|..+++++|+..--+
T Consensus 113 ~d~tDn~esR~L~~~~~~~~~k~~I~aalGf 143 (307)
T cd01486 113 FLLTDSRESRWLPTLLSAAKNKLVINAALGF 143 (307)
T ss_pred EECCCCHHHHHHHHHHHHHhCCcEEEEEecc
Confidence 8888899999999999999999999864433
No 485
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=37.30 E-value=22 Score=36.97 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhhhc------Cceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK------GYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~------G~KVANvP 283 (393)
++|.|.++||||=|...+|+. |.+|.-++
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 899999999999999999854 66665544
No 486
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=37.29 E-value=14 Score=33.07 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=0.0
Q ss_pred EccCCCCCChhhHHhh-hcCc
Q 016228 258 SGVSRTGKTPLSIYLA-QKGY 277 (393)
Q Consensus 258 vGVSRTsKTPlSmYLA-~~G~ 277 (393)
+|+|+||||=++-.|| ..|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~ 21 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHA 21 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCC
No 487
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=37.12 E-value=31 Score=32.62 Aligned_cols=106 Identities=30% Similarity=0.445 Sum_probs=76.8
Q ss_pred CcEEEEccCCCCCChhhHHhh-hcCceeeec-------------------cccC----------------------CC-C
Q 016228 253 ADIILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------PIVM----------------------GV-E 289 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA-~~G~KVANv-------------------PLVp----------------------~v-~ 289 (393)
-.|++-|-.+||||-||-.|| -.|++--|+ |++. +. =
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVDyHgCd~ 87 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVDYHGCDF 87 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEEeecccCc
Confidence 469999999999999999999 679988776 3332 11 2
Q ss_pred CCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH---HHHHHH-----HHHHHHHhhhCCCCcEEeC
Q 016228 290 LPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM---DYVREE-----LEFAGRIFAQNPVWPVIEV 361 (393)
Q Consensus 290 lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~---e~I~~E-----L~~A~~lf~k~~g~pVIDV 361 (393)
.|+.+|+ .||-|+.+-..|-. ||++-| |... +.++-| ++.|++-|... +|..-
T Consensus 88 Fperwfd----lVvVLr~~~s~LY~----RL~sRg--------Y~e~Ki~eNiecEIfgv~~eea~eSy~~~---iV~eL 148 (176)
T KOG3347|consen 88 FPERWFD----LVVVLRTPNSVLYD----RLKSRG--------YSEKKIKENIECEIFGVVLEEARESYSPK---IVVEL 148 (176)
T ss_pred cchhhee----EEEEEecCchHHHH----HHHHcC--------CCHHHHhhhcchHHHHHHHHHHHHHcCCc---ceeec
Confidence 4666664 59999999999975 776555 3331 122233 46799999884 78899
Q ss_pred CCccHHHHHHHHHHHH
Q 016228 362 TGKAIEETAAVVLRLY 377 (393)
Q Consensus 362 T~kSIEEtAa~Il~~~ 377 (393)
.....||.-+.|=+++
T Consensus 149 ~s~~~Eem~~ni~ri~ 164 (176)
T KOG3347|consen 149 QSETKEEMESNISRIL 164 (176)
T ss_pred CcCCHHHHHHHHHHHH
Confidence 9999988877655544
No 488
>PRK09354 recA recombinase A; Provisional
Probab=37.08 E-value=23 Score=36.59 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=45.3
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHH-hhhhhhhhhhhCCCCCCCCCCCcCcEE-EEccCCCCCChhhHHh
Q 016228 195 LGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYF-RRIEAIEFTIKQDDGALPQNLQKADII-LSGVSRTGKTPLSIYL 272 (393)
Q Consensus 195 l~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF-~RIeAIEFAlkhDDG~~p~~L~eADIV-LvGVSRTsKTPlSmYL 272 (393)
|...+..|++.+|....-. -|.......+.+ --+.+++.++-- .||..=-|+ |.|.++||||=||+.+
T Consensus 11 ~~~~~~~i~~~~g~~~~~~----~~~~~~~~~~~isTGi~~LD~~LG~------GGip~G~IteI~G~~GsGKTtLal~~ 80 (349)
T PRK09354 11 LEAALKQIEKQFGKGSIMR----LGDDAAMDVEVISTGSLALDIALGI------GGLPRGRIVEIYGPESSGKTTLALHA 80 (349)
T ss_pred HHHHHHHHHHHhCCCCceE----cccccccCCceecCCcHHHHHHhcC------CCCcCCeEEEEECCCCCCHHHHHHHH
Confidence 6678899999999876421 111111111111 114455555521 356655555 7899999999999987
Q ss_pred h----hcCceee
Q 016228 273 A----QKGYKVA 280 (393)
Q Consensus 273 A----~~G~KVA 280 (393)
+ ..|-+|+
T Consensus 81 ~~~~~~~G~~~~ 92 (349)
T PRK09354 81 IAEAQKAGGTAA 92 (349)
T ss_pred HHHHHHcCCcEE
Confidence 7 3455555
No 489
>CHL00195 ycf46 Ycf46; Provisional
Probab=36.99 E-value=22 Score=38.07 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|.|+++||||=++-.+|+.
T Consensus 262 ILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999953
No 490
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=36.91 E-value=25 Score=31.95 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=25.4
Q ss_pred EEEEccCCCCCChh------hHHhhhcCcee----eeccccC
Q 016228 255 IILSGVSRTGKTPL------SIYLAQKGYKV----ANVPIVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPl------SmYLA~~G~KV----ANvPLVp 286 (393)
++|.|+-.+|||=+ ..+|||.|.-| +++|++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d 43 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFD 43 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccc
Confidence 68999999999976 88999999644 5555554
No 491
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=36.82 E-value=2.7e+02 Score=24.67 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=59.7
Q ss_pred CCChhhHHhhhcCceeeeccc-cCCCCCCccccccCCCcEEEEecC----hhHHHHHHHHHHhhcCCCCC----CCC---
Q 016228 264 GKTPLSIYLAQKGYKVANVPI-VMGVELPKSLFQVDPEKVFGLTIN----PLVLQSIRKARARSLGFRDE----IRS--- 331 (393)
Q Consensus 264 sKTPlSmYLA~~G~KVANvPL-Vp~v~lP~~L~~i~~~KI~GLTId----P~rL~~IR~eRl~~lGl~~~----~~S--- 331 (393)
||-=.+++|.++||+|-++-. +|.-++.+..-+ ..-.++||..- ...+.++. ++++..|+.+- .++
T Consensus 19 G~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~-~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 19 GNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLR-EKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHH-HHHHhcCCCCCeEEEECCCCC
Confidence 344467888899999999864 333333344434 34458888652 22222322 23444444211 011
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 332 NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 332 ~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
.=.+.+.++++ +++. |+-.|=..+..+||++..|.+.++.|
T Consensus 97 ~~~~~~~~~~~-------l~~~-G~~~vf~~~~~~~~i~~~l~~~~~~~ 137 (137)
T PRK02261 97 GKHDFEEVEKK-------FKEM-GFDRVFPPGTDPEEAIDDLKKDLNQR 137 (137)
T ss_pred CccChHHHHHH-------HHHc-CCCEEECcCCCHHHHHHHHHHHhccC
Confidence 11123333333 4564 87666666779999999998877653
No 492
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=36.81 E-value=19 Score=40.04 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhh-------hhhhhhhhC-CCCCCCCCCCcCcEEEEccCCCCCChhh
Q 016228 198 ITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRI-------EAIEFTIKQ-DDGALPQNLQKADIILSGVSRTGKTPLS 269 (393)
Q Consensus 198 ~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RI-------eAIEFAlkh-DDG~~p~~L~eADIVLvGVSRTsKTPlS 269 (393)
+-..++..+|++.........+....+...--+|| ++|-=++.. -=|-...+=..+=++++|+++||||=++
T Consensus 422 i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 422 IENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred HHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Q ss_pred HHhh-hcCcee
Q 016228 270 IYLA-QKGYKV 279 (393)
Q Consensus 270 mYLA-~~G~KV 279 (393)
-.|| ..|.++
T Consensus 502 ~~la~~l~~~~ 512 (731)
T TIGR02639 502 KQLAEALGVHL 512 (731)
T ss_pred HHHHHHhcCCe
No 493
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=36.79 E-value=16 Score=35.61 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhCCCCcEEe-CCCccHHHHHHHHHHHHhhc
Q 016228 341 EELEFAGRIFAQNPVWPVIE-VTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 341 ~EL~~A~~lf~k~~g~pVID-VT~kSIEEtAa~Il~~~~~r 380 (393)
+=+.-||.++.+ +.+-+-| =|+--=.+++..|++++.+.
T Consensus 149 QRVAIARAL~~~-P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 149 QRVAIARALINN-PKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHHHHHHHHhcC-CCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 346677777766 4443333 36666678888888888654
No 494
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=36.75 E-value=29 Score=38.46 Aligned_cols=46 Identities=35% Similarity=0.517 Sum_probs=0.0
Q ss_pred hhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 233 EAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 233 eAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
++++|.++|.+ |..+..= |+|.|.++||||=+.-+|| ..|...-.+
T Consensus 467 ~~v~~~~~~~~~~~~~g~~~~~g----iLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 467 EAVEWPLKHPEIFEKMGIRPPKG----VLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred HHHHhhhhCHHHHHhcCCCCCce----EEEECCCCCCHHHHHHHHHHhcCCCEEEE
No 495
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=32 Score=37.86 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhh--hhhhhhhhCCCC-CCCCCCC-----cCcEEEEccCCCCCChhhH
Q 016228 199 TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRI--EAIEFTIKQDDG-ALPQNLQ-----KADIILSGVSRTGKTPLSI 270 (393)
Q Consensus 199 i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RI--eAIEFAlkhDDG-~~p~~L~-----eADIVLvGVSRTsKTPlSm 270 (393)
-+.+..++..++. .+|....-...-...| .+-+..+.|+|| ..+.++. .--++|||.|++|||-|--
T Consensus 291 ~d~i~~~l~~~~~-----~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~ 365 (559)
T COG4988 291 ADKLFTLLESPVA-----TPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLN 365 (559)
T ss_pred HHHHHHHhcCCCC-----CCCCccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHH
Confidence 3445555554443 3333333233333333 345899999999 6666654 2347999999999998766
Q ss_pred Hhh--h---cC-ceeeeccccC
Q 016228 271 YLA--Q---KG-YKVANVPIVM 286 (393)
Q Consensus 271 YLA--~---~G-~KVANvPLVp 286 (393)
-|+ + -| +++--+|+-.
T Consensus 366 lL~G~~~~~~G~I~vng~~l~~ 387 (559)
T COG4988 366 LLLGFLAPTQGEIRVNGIDLRD 387 (559)
T ss_pred HHhCcCCCCCceEEECCccccc
Confidence 665 2 23 5665555543
No 496
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=36.70 E-value=1.2e+02 Score=30.90 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEee
Q 016228 149 DVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTD 193 (393)
Q Consensus 149 t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~vD 193 (393)
+.+.+.++++. --+|+.+.-+.+.|..+.+.|.++++|+|-
T Consensus 106 ~~~~~~~~~~~----~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~ 146 (339)
T PRK07688 106 TAEELEELVTG----VDLIIDATDNFETRFIVNDAAQKYGIPWIY 146 (339)
T ss_pred CHHHHHHHHcC----CCEEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 44555555533 249999999999999999999999999885
No 497
>PRK08084 DNA replication initiation factor; Provisional
Probab=36.67 E-value=25 Score=33.39 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=22.4
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 254 DIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
=++|.|.++||||=|..=+| +.|++|.=+++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 38999999999999876555 35666654443
No 498
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=36.59 E-value=78 Score=33.33 Aligned_cols=159 Identities=24% Similarity=0.302 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeec--chHH---HHHHHHHhCCCCCCCCCCCCCCC
Q 016228 147 IDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDV--LGPI---TEAIASHLGVSPSGLPRGAPGRN 221 (393)
Q Consensus 147 V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDl--l~p~---i~~Le~~lG~~P~~~~~~~pG~~ 221 (393)
+.+.+.+.++|++. -+|-...-+-+-..+.++|-+.|+.++|+ ..+. ++.....-|.......+-.||
T Consensus 56 ~~d~~al~~li~~~-----d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPG-- 128 (389)
T COG1748 56 AADVDALVALIKDF-----DLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPG-- 128 (389)
T ss_pred ccChHHHHHHHhcC-----CEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcc--
Confidence 55666666666553 34445557777778888999999999997 3444 455555556554432334555
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhH---------Hhh--------hcCce------
Q 016228 222 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSI---------YLA--------QKGYK------ 278 (393)
Q Consensus 222 ~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSm---------YLA--------~~G~K------ 278 (393)
++.-|-.+.. -.+|| .+...||...|.-==+..||.. .+. +.|=-
T Consensus 129 --i~nv~a~~a~-----~~~~~-----~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~~ 196 (389)
T COG1748 129 --ITNVLAAYAA-----KELFD-----EIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDPL 196 (389)
T ss_pred --hHHHHHHHHH-----HHhhc-----cccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecCc
Confidence 4444433322 23333 4445555544443333233221 111 11211
Q ss_pred ----eeeccccC----------C-CCCCccccccCCCcEEEEecC-hhHHHHHHHHHHhhcCCCC
Q 016228 279 ----VANVPIVM----------G-VELPKSLFQVDPEKVFGLTIN-PLVLQSIRKARARSLGFRD 327 (393)
Q Consensus 279 ----VANvPLVp----------~-v~lP~~L~~i~~~KI~GLTId-P~rL~~IR~eRl~~lGl~~ 327 (393)
+-.+|++. + ..|++.+ ..-.+..|..|+. |..+.-|+--| .||+-+
T Consensus 197 ~~~~~~~~~~~G~~~~y~~~~~el~sL~~~i-~~~~~~~~~~t~r~~g~~~~i~~L~--~lGll~ 258 (389)
T COG1748 197 EEREVFEFPVIGYGDVYAFYHDELRSLVKTI-PGVVRTRFEMTFRYPGHLEVIKALR--DLGLLS 258 (389)
T ss_pred ccccccccCCCCceeEEecCCccHHHHHHhC-cccceeeEEeecCcccHHHHHHHHH--HcCCCc
Confidence 22344432 1 1223333 1114568999999 99999998855 688854
No 499
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=36.56 E-value=21 Score=35.39 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=28.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
|.|||...+|||-|==-|.+...+++|||.+-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftT 32 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCT 32 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccc
Confidence 46899999999998888888788999999874
No 500
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=36.50 E-value=1.3e+02 Score=28.42 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=48.5
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+.+|+-+| .|. -|+.+++.+..-.|++ +++.+.- . ++ .+.+.+++++ --+||.+.-+.+.
T Consensus 70 Rq~~~~~d-vG~~Ka~~a~~~l~~lnp~v------~v~~~~~-~------i~-~~~~~~~~~~----~DvVI~a~D~~~~ 130 (212)
T PRK08644 70 RQQYFISQ-IGMPKVEALKENLLEINPFV------EIEAHNE-K------ID-EDNIEELFKD----CDIVVEAFDNAET 130 (212)
T ss_pred ccEeehhh-CCChHHHHHHHHHHHHCCCC------EEEEEee-e------cC-HHHHHHHHcC----CCEEEECCCCHHH
Confidence 44565444 664 4555555444445653 2333322 2 33 3445555533 2488988899999
Q ss_pred HHHHHHHHHHc-CCCEeec
Q 016228 177 AESAKKACELW-GIPSTDV 194 (393)
Q Consensus 177 r~~l~~~~~~~-gi~~vDl 194 (393)
|..+.+.|.++ ++|+|--
T Consensus 131 r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 131 KAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred HHHHHHHHHHhCCCCEEEe
Confidence 99999999998 9999965
Done!