Query 016228
Match_columns 393
No_of_seqs 141 out of 617
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kb2_A SPBC2 prophage-derived 97.7 9.6E-05 3.3E-09 61.8 7.5 120 255-383 4-170 (173)
2 3trf_A Shikimate kinase, SK; a 97.1 0.00033 1.1E-08 60.0 3.9 118 255-380 8-175 (185)
3 3t61_A Gluconokinase; PSI-biol 97.0 0.00084 2.9E-08 58.6 6.1 114 255-380 21-180 (202)
4 3ake_A Cytidylate kinase; CMP 97.0 0.003 1E-07 54.5 9.1 68 299-378 136-207 (208)
5 4e22_A Cytidylate kinase; P-lo 97.0 0.0042 1.4E-07 57.1 10.5 76 299-381 163-246 (252)
6 2h92_A Cytidylate kinase; ross 96.9 0.0067 2.3E-07 53.3 10.9 74 300-381 137-219 (219)
7 1via_A Shikimate kinase; struc 96.8 0.0025 8.4E-08 54.4 6.7 119 255-380 7-167 (175)
8 3lw7_A Adenylate kinase relate 96.8 0.0023 7.7E-08 52.7 6.3 114 255-379 4-176 (179)
9 3vaa_A Shikimate kinase, SK; s 96.8 0.0039 1.3E-07 54.6 8.1 121 255-380 28-196 (199)
10 1tev_A UMP-CMP kinase; ploop, 96.6 0.0079 2.7E-07 50.9 8.6 73 300-379 115-194 (196)
11 3iij_A Coilin-interacting nucl 96.4 0.0036 1.2E-07 53.5 5.5 118 254-380 13-174 (180)
12 2z0h_A DTMP kinase, thymidylat 96.4 0.0083 2.9E-07 51.2 7.8 70 298-380 121-192 (197)
13 1q3t_A Cytidylate kinase; nucl 96.3 0.031 1.1E-06 50.2 11.2 71 300-379 154-234 (236)
14 2jaq_A Deoxyguanosine kinase; 96.3 0.011 3.7E-07 50.5 7.7 77 298-380 124-201 (205)
15 4eun_A Thermoresistant glucoki 96.2 0.0071 2.4E-07 53.0 6.0 68 301-380 127-194 (200)
16 2c95_A Adenylate kinase 1; tra 96.2 0.03 1E-06 47.7 9.8 117 255-380 12-194 (196)
17 3nwj_A ATSK2; P loop, shikimat 96.1 0.0045 1.5E-07 58.0 4.9 127 254-381 50-238 (250)
18 1kag_A SKI, shikimate kinase I 96.1 0.0057 1.9E-07 51.5 5.1 42 336-378 130-171 (173)
19 1knq_A Gluconate kinase; ALFA/ 96.1 0.013 4.4E-07 49.7 6.9 113 255-379 11-173 (175)
20 1cke_A CK, MSSA, protein (cyti 95.9 0.038 1.3E-06 48.4 9.6 74 299-380 141-223 (227)
21 1qf9_A UMP/CMP kinase, protein 95.9 0.04 1.4E-06 46.4 9.1 118 255-379 9-191 (194)
22 2cdn_A Adenylate kinase; phosp 95.8 0.084 2.9E-06 45.8 11.2 124 242-378 10-200 (201)
23 1kht_A Adenylate kinase; phosp 95.7 0.011 3.7E-07 50.0 5.0 27 255-281 6-38 (192)
24 1zuh_A Shikimate kinase; alpha 95.7 0.027 9.3E-07 47.4 7.4 116 254-377 9-167 (168)
25 1ak2_A Adenylate kinase isoenz 95.7 0.048 1.6E-06 48.9 9.4 29 254-282 18-47 (233)
26 1y63_A LMAJ004144AAA protein; 95.5 0.028 9.7E-07 48.6 6.9 115 255-381 13-179 (184)
27 2bwj_A Adenylate kinase 5; pho 95.4 0.051 1.7E-06 46.4 8.0 27 255-281 15-42 (199)
28 2iyv_A Shikimate kinase, SK; t 95.3 0.015 5.1E-07 49.6 4.4 117 255-380 5-169 (184)
29 1ukz_A Uridylate kinase; trans 95.2 0.23 7.7E-06 42.9 11.8 74 299-379 121-201 (203)
30 2vli_A Antibiotic resistance p 95.2 0.16 5.4E-06 42.8 10.5 26 255-280 8-34 (183)
31 1vht_A Dephospho-COA kinase; s 95.2 0.052 1.8E-06 47.7 7.8 27 255-281 7-33 (218)
32 3cm0_A Adenylate kinase; ATP-b 95.2 0.11 3.7E-06 44.1 9.4 27 255-281 7-34 (186)
33 1e6c_A Shikimate kinase; phosp 95.1 0.075 2.6E-06 44.4 8.1 115 255-379 5-170 (173)
34 1jjv_A Dephospho-COA kinase; P 95.0 0.12 4.1E-06 44.9 9.3 26 255-280 5-30 (206)
35 3fb4_A Adenylate kinase; psych 95.0 0.12 4E-06 45.1 9.3 28 255-282 3-31 (216)
36 1nn5_A Similar to deoxythymidy 94.9 0.085 2.9E-06 45.5 8.0 70 299-380 130-201 (215)
37 1nks_A Adenylate kinase; therm 94.8 0.21 7.1E-06 42.0 10.2 20 255-274 4-23 (194)
38 3uie_A Adenylyl-sulfate kinase 94.8 0.034 1.2E-06 48.6 5.4 26 355-380 169-195 (200)
39 2if2_A Dephospho-COA kinase; a 94.8 0.08 2.7E-06 45.8 7.6 27 255-281 4-30 (204)
40 3dl0_A Adenylate kinase; phosp 94.6 0.1 3.4E-06 45.7 7.9 28 255-282 3-31 (216)
41 3be4_A Adenylate kinase; malar 94.6 0.15 5.1E-06 45.1 9.1 28 255-282 8-36 (217)
42 3r20_A Cytidylate kinase; stru 94.5 0.24 8.2E-06 46.1 10.5 71 303-380 150-228 (233)
43 2pbr_A DTMP kinase, thymidylat 94.5 0.2 6.7E-06 42.3 9.2 68 298-379 122-191 (195)
44 3tlx_A Adenylate kinase 2; str 94.4 0.14 4.7E-06 46.7 8.6 26 255-280 32-58 (243)
45 2qt1_A Nicotinamide riboside k 93.9 0.58 2E-05 40.6 11.3 25 255-279 24-50 (207)
46 2f6r_A COA synthase, bifunctio 93.9 0.37 1.3E-05 45.0 10.6 27 255-281 78-104 (281)
47 1zak_A Adenylate kinase; ATP:A 93.7 0.19 6.5E-06 44.3 7.9 27 255-281 8-35 (222)
48 3tr0_A Guanylate kinase, GMP k 93.6 0.54 1.9E-05 40.2 10.3 21 255-275 10-30 (205)
49 4eaq_A DTMP kinase, thymidylat 92.9 0.36 1.2E-05 43.9 8.6 75 298-380 148-225 (229)
50 4ehx_A Tetraacyldisaccharide 4 92.1 0.055 1.9E-06 52.5 2.1 27 253-279 36-67 (315)
51 3a4m_A L-seryl-tRNA(SEC) kinas 91.8 0.46 1.6E-05 43.5 7.8 26 255-280 7-36 (260)
52 3ney_A 55 kDa erythrocyte memb 91.5 0.49 1.7E-05 43.0 7.6 80 298-380 108-190 (197)
53 3hjn_A DTMP kinase, thymidylat 90.8 0.83 2.9E-05 40.6 8.3 67 299-380 122-192 (197)
54 1ex7_A Guanylate kinase; subst 88.2 2.8 9.4E-05 37.5 9.7 112 255-378 4-183 (186)
55 3zvl_A Bifunctional polynucleo 88.1 1.2 4.1E-05 44.0 8.0 125 153-281 92-288 (416)
56 3a00_A Guanylate kinase, GMP k 87.8 0.39 1.3E-05 41.4 3.7 19 255-273 4-22 (186)
57 1uj2_A Uridine-cytidine kinase 87.2 1.2 4.3E-05 40.1 6.9 24 255-278 25-49 (252)
58 3sr0_A Adenylate kinase; phosp 87.1 2 6.9E-05 38.7 8.1 120 255-379 3-204 (206)
59 2qmh_A HPR kinase/phosphorylas 86.8 0.36 1.2E-05 44.8 3.1 27 255-281 37-63 (205)
60 1uf9_A TT1252 protein; P-loop, 86.3 0.31 1.1E-05 41.6 2.2 26 255-280 11-36 (203)
61 3fdi_A Uncharacterized protein 85.3 1.5 5.3E-05 38.9 6.4 72 301-381 119-200 (201)
62 2v54_A DTMP kinase, thymidylat 84.8 0.33 1.1E-05 41.6 1.6 26 255-280 7-34 (204)
63 3tmk_A Thymidylate kinase; pho 84.7 0.75 2.6E-05 42.1 4.1 73 298-381 125-204 (216)
64 3eph_A TRNA isopentenyltransfe 83.3 1.5 5.2E-05 44.4 6.0 82 255-359 5-96 (409)
65 2rhm_A Putative kinase; P-loop 83.0 0.48 1.7E-05 40.0 1.9 27 255-281 8-35 (193)
66 1xjc_A MOBB protein homolog; s 82.7 0.52 1.8E-05 41.9 2.1 32 255-286 7-42 (169)
67 2pt5_A Shikimate kinase, SK; a 82.3 0.55 1.9E-05 39.0 2.0 117 255-381 3-165 (168)
68 2ze6_A Isopentenyl transferase 82.3 0.52 1.8E-05 43.3 2.0 28 255-282 4-32 (253)
69 4tmk_A Protein (thymidylate ki 82.2 7.7 0.00026 35.1 9.7 73 298-382 132-209 (213)
70 1qhx_A CPT, protein (chloramph 82.1 0.62 2.1E-05 39.0 2.3 24 255-278 6-30 (178)
71 3lv8_A DTMP kinase, thymidylat 82.0 5.1 0.00017 37.0 8.6 75 298-381 154-230 (236)
72 1ly1_A Polynucleotide kinase; 81.8 0.59 2E-05 38.8 2.0 27 255-281 5-33 (181)
73 3hdt_A Putative kinase; struct 80.8 5.2 0.00018 36.5 8.1 71 300-380 138-219 (223)
74 3a8t_A Adenylate isopentenyltr 80.2 0.69 2.4E-05 45.7 2.2 27 255-281 43-70 (339)
75 2pez_A Bifunctional 3'-phospho 79.4 0.77 2.6E-05 38.9 1.9 26 255-280 8-37 (179)
76 1zd8_A GTP:AMP phosphotransfer 78.9 0.88 3E-05 40.2 2.3 27 255-281 10-37 (227)
77 4hlc_A DTMP kinase, thymidylat 77.5 5.4 0.00019 35.7 7.0 71 299-380 125-201 (205)
78 3crm_A TRNA delta(2)-isopenten 77.4 0.97 3.3E-05 44.2 2.2 28 255-282 8-36 (323)
79 1e4v_A Adenylate kinase; trans 77.1 0.93 3.2E-05 39.7 1.8 28 255-282 3-31 (214)
80 1aky_A Adenylate kinase; ATP:A 77.1 1 3.4E-05 39.6 2.0 28 255-282 7-35 (220)
81 3exa_A TRNA delta(2)-isopenten 76.1 1.1 3.8E-05 44.1 2.2 23 255-277 6-29 (322)
82 3hp4_A GDSL-esterase; psychrot 75.7 3.4 0.00012 34.2 4.9 47 150-196 89-145 (185)
83 2xb4_A Adenylate kinase; ATP-b 75.6 1.2 4E-05 39.7 2.1 28 255-282 3-31 (223)
84 1k7c_A Rhamnogalacturonan acet 75.5 4.8 0.00016 35.8 6.1 54 150-203 111-178 (233)
85 3eie_A Vacuolar protein sortin 75.2 1.9 6.4E-05 40.5 3.5 48 232-279 31-79 (322)
86 3p94_A GDSL-like lipase; serin 75.1 4.9 0.00017 33.6 5.8 48 151-198 101-165 (204)
87 1d2n_A N-ethylmaleimide-sensit 74.8 0.8 2.7E-05 41.6 0.8 25 254-278 66-91 (272)
88 4edh_A DTMP kinase, thymidylat 74.8 7.9 0.00027 34.8 7.4 73 299-380 132-207 (213)
89 2grj_A Dephospho-COA kinase; T 74.5 1.3 4.4E-05 39.5 2.0 27 255-281 15-42 (192)
90 1jbk_A CLPB protein; beta barr 74.3 1.3 4.6E-05 36.1 2.0 22 254-275 45-66 (195)
91 3tau_A Guanylate kinase, GMP k 73.9 1.1 3.9E-05 39.3 1.6 80 298-381 97-190 (208)
92 2j41_A Guanylate kinase; GMP, 73.7 1.2 4.2E-05 37.9 1.7 22 255-276 9-30 (207)
93 2wwf_A Thymidilate kinase, put 73.5 1.2 4.2E-05 38.2 1.6 69 299-380 131-200 (212)
94 3mil_A Isoamyl acetate-hydroly 73.1 7.8 0.00027 33.1 6.7 52 151-202 100-177 (240)
95 2qor_A Guanylate kinase; phosp 73.0 1.1 3.9E-05 38.9 1.3 20 255-274 15-34 (204)
96 4hf7_A Putative acylhydrolase; 73.0 7 0.00024 33.8 6.4 48 152-199 106-171 (209)
97 3foz_A TRNA delta(2)-isopenten 72.8 1.5 5.1E-05 43.0 2.2 27 255-281 13-40 (316)
98 1ivn_A Thioesterase I; hydrola 72.8 8.9 0.0003 32.1 6.8 47 151-197 86-142 (190)
99 4a1f_A DNAB helicase, replicat 72.6 12 0.00042 36.4 8.7 144 192-379 5-153 (338)
100 3bgw_A DNAB-like replicative h 71.1 67 0.0023 32.0 13.9 26 249-274 193-219 (444)
101 3rjt_A Lipolytic protein G-D-S 70.9 8.6 0.00029 32.1 6.3 52 150-201 116-181 (216)
102 2p65_A Hypothetical protein PF 70.6 1.5 5.2E-05 35.9 1.5 22 254-275 45-66 (187)
103 1zud_1 Adenylyltransferase THI 70.6 15 0.00051 33.8 8.4 71 106-194 78-149 (251)
104 3dc7_A Putative uncharacterize 70.3 8.3 0.00028 33.4 6.2 47 151-197 114-183 (232)
105 2yvu_A Probable adenylyl-sulfa 69.6 1.7 5.9E-05 36.9 1.6 25 355-379 159-183 (186)
106 1np6_A Molybdopterin-guanine d 69.2 2.1 7.1E-05 37.7 2.1 30 255-284 9-42 (174)
107 2qp9_X Vacuolar protein sortin 69.1 3.1 0.00011 40.0 3.5 49 231-279 63-112 (355)
108 1gtv_A TMK, thymidylate kinase 68.9 0.85 2.9E-05 39.2 -0.4 26 255-280 3-32 (214)
109 3d3q_A TRNA delta(2)-isopenten 68.8 2 6.9E-05 42.3 2.1 24 255-278 10-34 (340)
110 1kgd_A CASK, peripheral plasma 68.3 1.7 5.9E-05 37.2 1.4 77 298-378 94-177 (180)
111 1ltq_A Polynucleotide kinase; 68.3 2.1 7.1E-05 39.2 2.0 26 255-280 5-32 (301)
112 3tqf_A HPR(Ser) kinase; transf 68.2 2.3 8E-05 38.8 2.3 26 255-280 19-44 (181)
113 1gvn_B Zeta; postsegregational 68.2 2.8 9.7E-05 39.3 2.9 20 255-274 36-55 (287)
114 2wjg_A FEOB, ferrous iron tran 67.8 2.5 8.7E-05 35.0 2.3 34 251-284 6-39 (188)
115 3n70_A Transport activator; si 67.2 1.9 6.5E-05 35.7 1.4 32 253-285 25-56 (145)
116 2qz4_A Paraplegin; AAA+, SPG7, 67.0 2.3 7.8E-05 37.6 1.9 25 255-279 42-67 (262)
117 3h8v_A Ubiquitin-like modifier 66.6 27 0.00094 33.4 9.5 79 103-194 82-168 (292)
118 2plr_A DTMP kinase, probable t 66.6 2 6.8E-05 36.5 1.4 25 355-380 184-208 (213)
119 3h4m_A Proteasome-activating n 66.3 2.7 9.3E-05 37.9 2.3 26 255-280 54-80 (285)
120 2px0_A Flagellar biosynthesis 66.2 2.5 8.4E-05 40.1 2.1 30 254-283 107-141 (296)
121 4bas_A ADP-ribosylation factor 66.0 55 0.0019 26.9 10.8 134 247-382 12-192 (199)
122 1zp6_A Hypothetical protein AT 65.3 2.3 8E-05 35.9 1.6 26 356-381 152-177 (191)
123 3lnc_A Guanylate kinase, GMP k 64.8 2.7 9.2E-05 37.2 2.0 19 255-273 30-48 (231)
124 2v3c_C SRP54, signal recogniti 64.1 3 0.0001 41.9 2.4 27 254-280 101-131 (432)
125 2cvh_A DNA repair and recombin 64.0 2.8 9.7E-05 35.9 1.9 34 249-282 16-51 (220)
126 2q6t_A DNAB replication FORK h 63.9 16 0.00056 36.0 7.6 26 249-274 196-222 (444)
127 3ec2_A DNA replication protein 63.8 2.2 7.5E-05 36.1 1.1 28 254-281 40-72 (180)
128 3hws_A ATP-dependent CLP prote 63.8 2.1 7.2E-05 40.7 1.1 25 251-275 50-74 (363)
129 1jw9_B Molybdopterin biosynthe 63.7 21 0.00071 32.7 7.8 70 107-194 82-152 (249)
130 1lnz_A SPO0B-associated GTP-bi 63.4 2.6 8.7E-05 41.0 1.7 35 252-286 158-192 (342)
131 1xwi_A SKD1 protein; VPS4B, AA 62.3 5.8 0.0002 37.5 3.9 51 224-274 17-67 (322)
132 2wji_A Ferrous iron transport 62.2 3 0.0001 34.4 1.7 31 253-283 4-34 (165)
133 3t15_A Ribulose bisphosphate c 62.1 3 0.0001 38.9 1.8 28 255-282 39-67 (293)
134 3dm5_A SRP54, signal recogniti 61.8 3.2 0.00011 42.3 2.1 29 253-281 101-133 (443)
135 4h08_A Putative hydrolase; GDS 61.8 10 0.00036 32.0 5.1 49 151-199 96-164 (200)
136 3d8b_A Fidgetin-like protein 1 61.6 6 0.0002 37.8 3.9 49 232-280 97-146 (357)
137 2bdt_A BH3686; alpha-beta prot 61.5 2.8 9.6E-05 35.6 1.4 20 255-274 5-24 (189)
138 2drn_C 24-residues peptide fro 61.5 4 0.00014 26.4 1.7 15 365-379 2-16 (26)
139 3b9p_A CG5977-PA, isoform A; A 61.0 3.9 0.00013 37.2 2.4 26 254-279 56-82 (297)
140 3v7e_A Ribosome-associated pro 61.0 24 0.00084 27.4 6.7 43 166-210 31-73 (82)
141 3vfd_A Spastin; ATPase, microt 60.5 6.4 0.00022 37.9 3.9 29 253-281 149-178 (389)
142 1ofh_A ATP-dependent HSL prote 60.4 3.5 0.00012 37.1 1.9 24 254-277 52-76 (310)
143 2bbw_A Adenylate kinase 4, AK4 60.3 3 0.0001 37.3 1.4 44 219-278 10-54 (246)
144 1vjg_A Putative lipase from th 60.0 11 0.00038 32.2 5.0 48 151-198 117-177 (218)
145 2plr_A DTMP kinase, probable t 59.8 25 0.00085 29.6 7.1 16 299-314 122-137 (213)
146 3cf0_A Transitional endoplasmi 59.6 4.2 0.00014 37.8 2.3 39 232-274 28-71 (301)
147 2vp4_A Deoxynucleoside kinase; 59.5 3.3 0.00011 36.9 1.5 75 298-380 146-225 (230)
148 1v5w_A DMC1, meiotic recombina 59.2 4 0.00014 39.1 2.2 26 249-274 118-144 (343)
149 4b4t_J 26S protease regulatory 59.2 4.6 0.00016 40.7 2.7 55 224-282 153-213 (405)
150 1c9k_A COBU, adenosylcobinamid 58.7 4 0.00014 36.6 2.0 25 255-279 2-26 (180)
151 2w58_A DNAI, primosome compone 58.4 3.4 0.00012 35.3 1.4 22 253-274 55-76 (202)
152 3a1s_A Iron(II) transport prot 58.3 4.5 0.00015 37.1 2.3 124 254-378 7-166 (258)
153 1lv7_A FTSH; alpha/beta domain 58.2 4.2 0.00014 36.3 2.0 20 255-274 48-67 (257)
154 2xxa_A Signal recognition part 58.1 4 0.00014 41.0 2.1 26 255-280 103-133 (433)
155 3syl_A Protein CBBX; photosynt 58.0 3.4 0.00012 37.6 1.4 21 254-274 69-89 (309)
156 1p5z_B DCK, deoxycytidine kina 57.9 41 0.0014 30.2 8.6 72 298-379 174-258 (263)
157 2bjv_A PSP operon transcriptio 57.8 3.3 0.00011 37.2 1.3 24 253-276 30-53 (265)
158 3bh0_A DNAB-like replicative h 57.8 35 0.0012 32.1 8.4 27 249-275 64-91 (315)
159 3kl4_A SRP54, signal recogniti 57.3 3.7 0.00013 41.5 1.7 27 254-280 99-129 (433)
160 1m7g_A Adenylylsulfate kinase; 57.0 3.5 0.00012 36.0 1.2 25 356-380 179-203 (211)
161 1lvg_A Guanylate kinase, GMP k 56.6 3.8 0.00013 35.8 1.4 19 255-273 7-25 (198)
162 1m7g_A Adenylylsulfate kinase; 56.6 19 0.00065 31.2 5.9 15 300-314 133-147 (211)
163 2p5t_B PEZT; postsegregational 56.2 4.9 0.00017 36.4 2.1 23 254-276 34-57 (253)
164 1rz3_A Hypothetical protein rb 55.9 5 0.00017 34.9 2.0 26 255-280 25-54 (201)
165 3v9p_A DTMP kinase, thymidylat 55.6 9.6 0.00033 34.9 4.0 71 299-378 152-225 (227)
166 3dz8_A RAS-related protein RAB 55.5 13 0.00045 31.1 4.6 35 345-380 150-187 (191)
167 3pfi_A Holliday junction ATP-d 55.3 5.3 0.00018 37.0 2.2 33 254-286 57-92 (338)
168 2vhj_A Ntpase P4, P4; non- hyd 54.9 3.1 0.00011 41.1 0.6 30 255-284 126-156 (331)
169 3bos_A Putative DNA replicatio 54.5 4.4 0.00015 34.7 1.4 30 254-283 54-87 (242)
170 2c9o_A RUVB-like 1; hexameric 54.4 4.9 0.00017 39.9 2.0 24 254-277 65-89 (456)
171 2kjq_A DNAA-related protein; s 54.2 8.1 0.00028 32.5 3.1 30 254-283 38-71 (149)
172 3co5_A Putative two-component 54.2 3.8 0.00013 33.8 0.9 24 253-276 28-51 (143)
173 1um8_A ATP-dependent CLP prote 54.0 5.6 0.00019 37.8 2.2 26 253-278 73-99 (376)
174 1j8m_F SRP54, signal recogniti 53.8 8.1 0.00028 36.6 3.3 26 255-280 101-130 (297)
175 2wsm_A Hydrogenase expression/ 53.7 5.6 0.00019 34.2 2.0 29 254-282 32-63 (221)
176 2v54_A DTMP kinase, thymidylat 53.6 21 0.00072 30.1 5.6 68 299-380 122-191 (204)
177 2chg_A Replication factor C sm 53.6 4.7 0.00016 33.6 1.4 20 255-274 41-60 (226)
178 1yzf_A Lipase/acylhydrolase; s 53.6 17 0.0006 29.6 4.9 49 151-200 93-155 (195)
179 1n0w_A DNA repair protein RAD5 53.3 4.6 0.00016 35.1 1.4 26 249-274 20-46 (243)
180 1vma_A Cell division protein F 53.2 5.6 0.00019 38.1 2.1 26 255-280 107-136 (306)
181 3b1v_A Ferrous iron uptake tra 53.0 5.2 0.00018 37.3 1.8 30 254-283 5-34 (272)
182 3k53_A Ferrous iron transport 53.0 6.6 0.00023 35.7 2.4 32 254-285 5-36 (271)
183 3uk6_A RUVB-like 2; hexameric 52.8 4.6 0.00016 37.7 1.4 22 254-275 72-93 (368)
184 1g8p_A Magnesium-chelatase 38 52.8 5.7 0.0002 36.6 2.0 21 255-275 48-68 (350)
185 2qby_B CDC6 homolog 3, cell di 52.7 5.7 0.0002 37.0 2.0 22 254-275 47-68 (384)
186 3v7q_A Probable ribosomal prot 52.6 38 0.0013 27.1 6.7 43 166-210 39-81 (101)
187 1ojl_A Transcriptional regulat 52.6 5.2 0.00018 37.6 1.7 33 253-286 26-58 (304)
188 1knx_A Probable HPR(Ser) kinas 52.5 6.3 0.00022 38.4 2.3 99 149-280 68-175 (312)
189 3asz_A Uridine kinase; cytidin 52.5 4.8 0.00016 34.6 1.4 22 255-276 9-31 (211)
190 2z43_A DNA repair and recombin 52.5 5.5 0.00019 37.6 1.9 26 249-274 103-129 (324)
191 4a74_A DNA repair and recombin 52.5 4.8 0.00017 34.6 1.4 26 249-274 21-47 (231)
192 1hqc_A RUVB; extended AAA-ATPa 52.4 5.8 0.0002 36.2 2.0 25 254-278 40-65 (324)
193 1nij_A Hypothetical protein YJ 52.2 7.4 0.00025 36.8 2.7 27 255-281 7-35 (318)
194 3on1_A BH2414 protein; structu 52.1 38 0.0013 27.0 6.6 44 165-210 37-80 (101)
195 3pxg_A Negative regulator of g 52.1 6.8 0.00023 39.2 2.6 23 253-275 202-224 (468)
196 2w0m_A SSO2452; RECA, SSPF, un 52.1 5 0.00017 34.3 1.4 25 249-273 19-44 (235)
197 3umf_A Adenylate kinase; rossm 51.9 5.3 0.00018 36.5 1.6 127 248-381 24-215 (217)
198 2qgz_A Helicase loader, putati 51.8 9.4 0.00032 36.0 3.4 40 234-279 140-184 (308)
199 3c8u_A Fructokinase; YP_612366 51.6 6.7 0.00023 34.2 2.2 30 255-284 25-58 (208)
200 3t5d_A Septin-7; GTP-binding p 51.4 21 0.00073 32.4 5.6 31 253-283 9-39 (274)
201 2cxx_A Probable GTP-binding pr 51.2 5.7 0.0002 32.7 1.6 30 254-283 3-32 (190)
202 2ehv_A Hypothetical protein PH 51.0 3.9 0.00013 35.7 0.5 26 249-274 26-52 (251)
203 4fcw_A Chaperone protein CLPB; 51.0 5.2 0.00018 36.3 1.4 22 254-275 49-70 (311)
204 4gp7_A Metallophosphoesterase; 50.8 4.1 0.00014 34.6 0.7 17 255-271 12-28 (171)
205 2r62_A Cell division protease 50.1 3 0.0001 37.4 -0.4 20 255-274 47-66 (268)
206 3iby_A Ferrous iron transport 50.1 7.3 0.00025 35.7 2.3 31 255-285 4-34 (256)
207 2qby_A CDC6 homolog 1, cell di 49.9 6.8 0.00023 36.0 2.0 30 254-283 47-83 (386)
208 4b4t_K 26S protease regulatory 49.7 6.6 0.00023 39.7 2.0 55 224-282 177-237 (428)
209 1s96_A Guanylate kinase, GMP k 49.7 5.7 0.0002 35.9 1.5 78 300-380 108-198 (219)
210 3p32_A Probable GTPase RV1496/ 49.3 6.5 0.00022 37.7 1.9 36 254-289 81-120 (355)
211 1sxj_A Activator 1 95 kDa subu 49.2 7.4 0.00025 39.3 2.3 29 254-282 79-108 (516)
212 2qu8_A Putative nucleolar GTP- 49.2 7.2 0.00025 34.0 2.0 32 253-284 30-61 (228)
213 1njg_A DNA polymerase III subu 49.1 6.2 0.00021 33.1 1.5 20 255-274 48-67 (250)
214 1jal_A YCHF protein; nucleotid 49.1 6.6 0.00023 38.8 1.9 32 254-285 4-35 (363)
215 2yhs_A FTSY, cell division pro 48.9 29 0.00099 36.0 6.7 91 171-274 222-315 (503)
216 1zu4_A FTSY; GTPase, signal re 48.8 7.2 0.00024 37.4 2.1 26 255-280 108-137 (320)
217 3l07_A Bifunctional protein fo 48.6 1.2E+02 0.0041 29.2 10.6 148 94-279 33-188 (285)
218 1ls1_A Signal recognition part 48.5 7.4 0.00025 36.6 2.1 26 255-280 101-130 (295)
219 1z6g_A Guanylate kinase; struc 48.2 6.1 0.00021 35.1 1.4 46 334-380 161-208 (218)
220 2eq5_A 228AA long hypothetical 48.2 81 0.0028 27.7 8.8 124 98-239 7-143 (228)
221 1ky3_A GTP-binding protein YPT 48.1 9.9 0.00034 30.8 2.5 24 252-275 8-31 (182)
222 3i8s_A Ferrous iron transport 48.0 8.2 0.00028 35.5 2.3 32 254-285 5-36 (274)
223 1ixz_A ATP-dependent metallopr 47.8 6.3 0.00022 35.1 1.4 20 255-274 52-71 (254)
224 2g6b_A RAS-related protein RAB 47.7 4.7 0.00016 32.9 0.5 37 345-382 138-177 (180)
225 2r44_A Uncharacterized protein 47.6 6.4 0.00022 36.5 1.5 30 254-283 48-78 (331)
226 2lkc_A Translation initiation 47.2 7.7 0.00026 31.5 1.8 126 253-381 9-173 (178)
227 2zan_A Vacuolar protein sortin 47.1 13 0.00045 36.8 3.7 51 224-274 139-189 (444)
228 1znw_A Guanylate kinase, GMP k 47.1 6.6 0.00023 34.2 1.4 25 249-273 16-41 (207)
229 2bdt_A BH3686; alpha-beta prot 46.8 21 0.00073 30.0 4.5 61 302-374 105-168 (189)
230 1sxj_D Activator 1 41 kDa subu 46.8 6.6 0.00023 36.1 1.4 21 255-275 61-81 (353)
231 3hu3_A Transitional endoplasmi 46.8 8.8 0.0003 39.0 2.4 22 254-275 240-261 (489)
232 4edh_A DTMP kinase, thymidylat 46.6 8.1 0.00028 34.8 2.0 26 255-280 9-38 (213)
233 2i1q_A DNA repair and recombin 46.5 7.9 0.00027 36.1 1.9 26 249-274 94-120 (322)
234 1z0f_A RAB14, member RAS oncog 46.5 6.4 0.00022 31.8 1.1 24 253-276 16-39 (179)
235 2hf9_A Probable hydrogenase ni 46.4 4.6 0.00016 34.9 0.2 21 254-274 40-60 (226)
236 2dr3_A UPF0273 protein PH0284; 46.2 6.9 0.00024 33.9 1.4 32 249-280 19-55 (247)
237 2ocp_A DGK, deoxyguanosine kin 46.2 8.7 0.0003 34.1 2.1 25 255-279 5-31 (241)
238 1ko7_A HPR kinase/phosphatase; 46.2 8.9 0.00031 37.3 2.3 26 255-280 147-172 (314)
239 3bzw_A Putative lipase; protei 46.1 22 0.00076 31.9 4.8 49 150-198 144-220 (274)
240 2dyk_A GTP-binding protein; GT 45.6 8.4 0.00029 30.6 1.7 29 255-283 4-33 (161)
241 3ld9_A DTMP kinase, thymidylat 45.5 8.3 0.00028 35.4 1.9 65 299-380 146-216 (223)
242 4b4t_L 26S protease subunit RP 45.5 8.4 0.00029 39.1 2.0 56 224-283 186-247 (437)
243 3tw8_B RAS-related protein RAB 45.5 7.9 0.00027 31.3 1.6 36 345-381 135-173 (181)
244 1g16_A RAS-related protein SEC 45.3 8.5 0.00029 30.8 1.7 35 345-380 129-166 (170)
245 2ffh_A Protein (FFH); SRP54, s 45.2 8.7 0.0003 38.7 2.1 26 255-280 101-130 (425)
246 2r2a_A Uncharacterized protein 45.0 11 0.00038 33.7 2.6 32 255-286 8-52 (199)
247 1l8q_A Chromosomal replication 44.7 8.6 0.0003 35.6 1.9 29 254-282 39-71 (324)
248 3v9p_A DTMP kinase, thymidylat 44.4 10 0.00035 34.8 2.3 36 232-274 12-47 (227)
249 2zts_A Putative uncharacterize 44.4 4.2 0.00014 35.3 -0.3 25 249-273 26-51 (251)
250 2q0q_A ARYL esterase; SGNH hyd 44.3 31 0.0011 29.0 5.2 24 175-198 163-186 (216)
251 1p5z_B DCK, deoxycytidine kina 43.9 7.5 0.00025 35.1 1.3 27 254-280 26-54 (263)
252 1ye8_A Protein THEP1, hypothet 43.8 8.6 0.00029 33.4 1.6 28 255-282 3-31 (178)
253 1a7j_A Phosphoribulokinase; tr 43.6 6.1 0.00021 37.2 0.6 22 255-276 8-30 (290)
254 2j37_W Signal recognition part 43.4 8.7 0.0003 39.6 1.8 28 254-281 103-134 (504)
255 2wwf_A Thymidilate kinase, put 43.4 24 0.00083 29.9 4.4 25 96-122 9-34 (212)
256 2x8a_A Nuclear valosin-contain 43.2 11 0.00038 34.8 2.4 20 255-274 47-66 (274)
257 2v1u_A Cell division control p 43.2 8.4 0.00029 35.5 1.5 21 254-274 46-66 (387)
258 1udx_A The GTP-binding protein 43.1 8.6 0.0003 38.5 1.7 126 253-380 158-326 (416)
259 1iy2_A ATP-dependent metallopr 42.7 8.4 0.00029 35.0 1.4 20 255-274 76-95 (278)
260 3con_A GTPase NRAS; structural 42.6 8.2 0.00028 32.0 1.2 32 244-275 13-44 (190)
261 4b4t_M 26S protease regulatory 42.5 10 0.00034 38.5 2.0 47 232-282 194-246 (434)
262 1u8z_A RAS-related protein RAL 42.4 8.1 0.00028 30.7 1.1 25 252-276 4-28 (168)
263 4i1u_A Dephospho-COA kinase; s 42.4 12 0.00041 34.2 2.4 30 254-283 11-40 (210)
264 1sxj_C Activator 1 40 kDa subu 42.3 8.5 0.00029 36.0 1.4 36 232-275 34-69 (340)
265 1yrb_A ATP(GTP)binding protein 42.3 10 0.00034 33.6 1.8 31 252-282 14-47 (262)
266 2fu5_C RAS-related protein RAB 42.2 7.5 0.00025 32.0 0.9 35 345-380 135-172 (183)
267 2r6a_A DNAB helicase, replicat 41.9 28 0.00095 34.4 5.1 26 249-274 199-225 (454)
268 2r8r_A Sensor protein; KDPD, P 41.7 10 0.00036 35.4 1.9 28 253-280 7-38 (228)
269 3ld9_A DTMP kinase, thymidylat 41.6 8.5 0.00029 35.3 1.3 28 254-281 23-55 (223)
270 2gj8_A MNME, tRNA modification 41.4 11 0.00036 31.5 1.7 30 254-283 6-36 (172)
271 2dby_A GTP-binding protein; GD 41.2 7.4 0.00025 38.3 0.9 32 254-285 3-34 (368)
272 2o14_A Hypothetical protein YX 41.0 31 0.0011 33.4 5.3 52 151-202 256-323 (375)
273 1fnn_A CDC6P, cell division co 40.8 11 0.00039 34.8 2.0 29 255-283 47-80 (389)
274 1u94_A RECA protein, recombina 40.5 11 0.00039 36.7 2.1 82 194-284 13-99 (356)
275 2ohf_A Protein OLA1, GTP-bindi 40.5 9.1 0.00031 38.3 1.4 32 254-285 24-55 (396)
276 1wms_A RAB-9, RAB9, RAS-relate 40.4 12 0.00042 30.3 1.9 28 253-280 8-35 (177)
277 2zej_A Dardarin, leucine-rich 39.8 9.8 0.00034 31.8 1.3 21 254-274 4-24 (184)
278 1byi_A Dethiobiotin synthase; 39.7 13 0.00044 32.1 2.1 26 255-280 4-34 (224)
279 3q72_A GTP-binding protein RAD 39.4 9.3 0.00032 30.6 1.1 35 345-380 128-165 (166)
280 2y8e_A RAB-protein 6, GH09086P 39.4 13 0.00043 30.0 1.9 26 250-275 12-37 (179)
281 3pxi_A Negative regulator of g 39.1 14 0.00047 39.0 2.6 23 253-275 202-224 (758)
282 1z2a_A RAS-related protein RAB 39.0 13 0.00044 29.7 1.8 25 253-277 6-30 (168)
283 3hdt_A Putative kinase; struct 38.8 13 0.00043 33.9 1.9 47 255-301 17-68 (223)
284 1cr0_A DNA primase/helicase; R 38.8 10 0.00035 34.7 1.4 31 250-280 32-68 (296)
285 1z08_A RAS-related protein RAB 38.8 14 0.00047 29.7 2.0 23 253-275 7-29 (170)
286 3e70_C DPA, signal recognition 38.7 13 0.00044 35.9 2.1 19 255-273 132-150 (328)
287 2erx_A GTP-binding protein DI- 38.6 14 0.00049 29.4 2.1 31 253-283 4-34 (172)
288 3lda_A DNA repair protein RAD5 38.6 10 0.00035 37.7 1.4 25 249-273 174-199 (400)
289 2yvu_A Probable adenylyl-sulfa 38.6 21 0.00073 30.0 3.3 15 300-314 114-128 (186)
290 3rui_A Ubiquitin-like modifier 38.5 25 0.00084 34.7 4.1 73 110-194 89-170 (340)
291 3lxx_A GTPase IMAP family memb 38.5 12 0.00041 33.0 1.7 32 252-283 29-60 (239)
292 1iqp_A RFCS; clamp loader, ext 38.4 11 0.00037 34.1 1.4 22 254-275 48-69 (327)
293 3bc1_A RAS-related protein RAB 38.3 14 0.00048 30.1 2.0 35 345-380 149-186 (195)
294 2zr9_A Protein RECA, recombina 38.3 13 0.00044 36.0 2.0 81 194-283 11-96 (349)
295 1x3s_A RAS-related protein RAB 38.1 8.5 0.00029 31.8 0.6 35 345-380 142-179 (195)
296 1rj9_A FTSY, signal recognitio 38.0 11 0.00037 35.9 1.4 19 255-273 105-123 (304)
297 4dzz_A Plasmid partitioning pr 37.9 12 0.00042 31.5 1.6 28 259-286 9-40 (206)
298 2vp4_A Deoxynucleoside kinase; 37.9 28 0.00097 30.7 4.1 16 104-121 28-43 (230)
299 4b4t_I 26S protease regulatory 37.9 13 0.00044 38.0 2.0 55 223-281 186-246 (437)
300 1ek0_A Protein (GTP-binding pr 37.8 13 0.00044 29.6 1.7 25 253-277 4-28 (170)
301 3end_A Light-independent proto 37.7 14 0.00047 34.0 2.1 32 255-286 44-79 (307)
302 2hsj_A Putative platelet activ 37.7 20 0.00069 30.2 3.0 49 151-199 109-180 (214)
303 3igf_A ALL4481 protein; two-do 37.7 26 0.0009 34.5 4.2 58 255-314 5-74 (374)
304 1qhx_A CPT, protein (chloramph 37.5 12 0.0004 31.1 1.4 22 356-377 155-176 (178)
305 3tkl_A RAS-related protein RAB 37.4 13 0.00046 30.7 1.8 37 345-382 143-182 (196)
306 2chq_A Replication factor C sm 37.4 11 0.00039 33.8 1.4 21 255-275 41-61 (319)
307 3lv8_A DTMP kinase, thymidylat 37.4 11 0.00037 34.8 1.2 24 255-278 30-57 (236)
308 1odf_A YGR205W, hypothetical 3 37.4 11 0.00036 35.7 1.2 19 255-273 34-52 (290)
309 3l0i_B RAS-related protein RAB 37.4 8.9 0.0003 32.4 0.6 25 253-277 34-58 (199)
310 1oix_A RAS-related protein RAB 37.3 13 0.00046 31.4 1.8 23 253-275 30-52 (191)
311 1q57_A DNA primase/helicase; d 37.3 37 0.0012 33.9 5.2 26 249-274 238-264 (503)
312 3cph_A RAS-related protein SEC 37.2 13 0.00046 31.2 1.7 26 253-278 21-46 (213)
313 2a5j_A RAS-related protein RAB 37.1 13 0.00046 31.0 1.7 35 345-380 148-185 (191)
314 1sxj_B Activator 1 37 kDa subu 37.0 11 0.00037 34.0 1.2 21 255-275 45-65 (323)
315 3o47_A ADP-ribosylation factor 37.0 24 0.00083 33.4 3.7 29 254-283 167-195 (329)
316 1aky_A Adenylate kinase; ATP:A 37.0 1.1E+02 0.0039 26.2 7.8 30 349-379 190-219 (220)
317 1x6v_B Bifunctional 3'-phospho 36.9 13 0.00044 39.5 1.9 24 357-380 200-223 (630)
318 3q85_A GTP-binding protein REM 36.8 13 0.00043 30.0 1.5 35 345-380 131-168 (169)
319 2ce2_X GTPase HRAS; signaling 36.6 14 0.00048 29.1 1.7 23 253-275 4-26 (166)
320 2pt5_A Shikimate kinase, SK; a 36.4 50 0.0017 26.9 5.1 12 334-345 148-159 (168)
321 2f1r_A Molybdopterin-guanine d 36.4 8.1 0.00028 33.7 0.2 30 255-284 5-38 (171)
322 3nkl_A UDP-D-quinovosamine 4-d 36.3 69 0.0024 25.6 5.9 84 97-194 4-98 (141)
323 3b9q_A Chloroplast SRP recepto 36.2 12 0.00042 35.5 1.5 19 255-273 103-121 (302)
324 3fdi_A Uncharacterized protein 35.9 16 0.00054 32.3 2.1 27 255-281 9-36 (201)
325 4a9a_A Ribosome-interacting GT 35.8 9.5 0.00033 37.8 0.7 50 252-302 72-121 (376)
326 1ypw_A Transitional endoplasmi 35.6 20 0.0007 38.6 3.2 44 231-274 216-260 (806)
327 1in4_A RUVB, holliday junction 35.6 12 0.00043 35.2 1.4 38 232-274 34-73 (334)
328 3f4w_A Putative hexulose 6 pho 35.5 1.3E+02 0.0044 25.9 7.9 100 157-259 70-187 (211)
329 2f9l_A RAB11B, member RAS onco 35.4 15 0.00052 31.0 1.8 35 344-379 131-168 (199)
330 4b4t_H 26S protease regulatory 35.2 13 0.00045 38.2 1.6 52 224-280 214-272 (467)
331 2bme_A RAB4A, RAS-related prot 35.0 15 0.00051 30.1 1.7 36 345-381 137-175 (186)
332 3cbq_A GTP-binding protein REM 35.0 10 0.00036 32.3 0.7 37 345-382 152-191 (195)
333 2jeo_A Uridine-cytidine kinase 34.9 13 0.00045 33.2 1.4 23 255-277 28-51 (245)
334 2gf9_A RAS-related protein RAB 34.8 16 0.00054 30.4 1.8 35 345-380 149-186 (189)
335 3zq6_A Putative arsenical pump 34.7 29 0.001 32.7 3.8 65 255-320 17-93 (324)
336 1qvr_A CLPB protein; coiled co 34.6 14 0.00049 39.6 1.8 22 254-275 193-214 (854)
337 3kjh_A CO dehydrogenase/acetyl 34.6 11 0.00038 32.5 0.8 28 255-282 3-34 (254)
338 2jfz_A Glutamate racemase; cel 34.5 1.5E+02 0.0052 27.0 8.5 83 112-205 13-103 (255)
339 1xp8_A RECA protein, recombina 34.1 16 0.00056 35.7 2.0 36 249-284 70-110 (366)
340 3dci_A Arylesterase; SGNH_hydr 34.1 53 0.0018 28.5 5.2 22 175-196 177-198 (232)
341 2vvt_A Glutamate racemase; iso 34.1 1.8E+02 0.0063 27.1 9.3 98 97-207 24-129 (290)
342 1nlf_A Regulatory protein REPA 33.9 14 0.00047 33.6 1.4 24 250-273 27-51 (279)
343 3uhf_A Glutamate racemase; str 33.7 1.3E+02 0.0043 28.5 8.1 84 111-205 36-127 (274)
344 2e87_A Hypothetical protein PH 33.5 18 0.00062 34.4 2.2 33 253-285 168-200 (357)
345 3k1j_A LON protease, ATP-depen 33.5 21 0.00071 36.8 2.8 34 232-275 50-83 (604)
346 2og2_A Putative signal recogni 33.4 14 0.00049 36.2 1.5 20 255-274 160-179 (359)
347 2ged_A SR-beta, signal recogni 33.1 17 0.00059 30.1 1.8 27 252-278 48-74 (193)
348 1nrj_B SR-beta, signal recogni 33.1 17 0.00059 30.9 1.8 26 253-278 13-38 (218)
349 3ipz_A Monothiol glutaredoxin- 32.9 1.5E+02 0.0051 23.3 7.3 59 152-210 6-73 (109)
350 2bcg_Y Protein YP2, GTP-bindin 32.9 17 0.00057 30.7 1.6 35 345-380 135-172 (206)
351 2xb4_A Adenylate kinase; ATP-b 32.8 1.7E+02 0.0059 25.4 8.3 22 355-377 201-222 (223)
352 3hr8_A Protein RECA; alpha and 32.7 18 0.00061 35.5 2.0 69 195-273 11-82 (356)
353 1jr3_A DNA polymerase III subu 32.6 15 0.00051 34.0 1.4 20 255-274 41-60 (373)
354 1ni3_A YCHF GTPase, YCHF GTP-b 32.4 16 0.00054 36.4 1.6 32 254-285 22-54 (392)
355 1zbd_A Rabphilin-3A; G protein 32.3 18 0.00063 30.2 1.8 25 253-277 9-33 (203)
356 1g8f_A Sulfate adenylyltransfe 32.3 12 0.00043 38.6 0.9 25 356-380 482-506 (511)
357 2yc2_C IFT27, small RAB-relate 32.2 30 0.001 28.7 3.1 36 344-380 154-193 (208)
358 3b85_A Phosphate starvation-in 32.2 23 0.0008 31.6 2.6 19 255-273 25-43 (208)
359 2ce7_A Cell division protein F 32.1 18 0.0006 36.9 1.9 20 255-274 52-71 (476)
360 1z06_A RAS-related protein RAB 32.1 20 0.00068 29.8 2.0 23 253-275 21-43 (189)
361 1pzn_A RAD51, DNA repair and r 31.9 15 0.00052 35.3 1.4 25 249-273 127-152 (349)
362 2oho_A Glutamate racemase; iso 31.7 1.8E+02 0.0063 26.7 8.7 97 97-207 12-117 (273)
363 3t1o_A Gliding protein MGLA; G 31.6 17 0.00059 29.7 1.5 37 344-381 154-194 (198)
364 1mh1_A RAC1; GTP-binding, GTPa 31.6 20 0.0007 29.1 1.9 34 345-379 143-180 (186)
365 1r8s_A ADP-ribosylation factor 31.6 17 0.00058 29.0 1.4 20 255-274 3-22 (164)
366 2fh5_B SR-beta, signal recogni 31.4 19 0.00067 30.5 1.8 30 253-283 8-37 (214)
367 2f7s_A C25KG, RAS-related prot 31.4 20 0.00068 30.5 1.9 36 344-380 162-200 (217)
368 1sxj_E Activator 1 40 kDa subu 31.0 15 0.00051 34.0 1.1 20 255-274 39-58 (354)
369 3ug7_A Arsenical pump-driving 30.9 53 0.0018 31.4 5.0 81 233-320 14-107 (349)
370 2hxs_A RAB-26, RAS-related pro 30.7 19 0.00065 29.1 1.6 35 345-380 137-174 (178)
371 1bif_A 6-phosphofructo-2-kinas 30.7 15 0.00053 36.4 1.2 21 254-274 41-61 (469)
372 2il1_A RAB12; G-protein, GDP, 30.7 18 0.0006 30.4 1.4 26 253-278 27-52 (192)
373 2axn_A 6-phosphofructo-2-kinas 30.7 17 0.0006 37.1 1.6 20 255-274 38-57 (520)
374 2iwr_A Centaurin gamma 1; ANK 30.6 20 0.00068 29.2 1.7 29 249-277 4-32 (178)
375 3lfu_A DNA helicase II; SF1 he 30.5 68 0.0023 32.4 5.9 52 255-322 25-76 (647)
376 2pez_A Bifunctional 3'-phospho 30.5 35 0.0012 28.5 3.3 23 357-379 153-175 (179)
377 3gx8_A Monothiol glutaredoxin- 30.5 1.5E+02 0.0053 23.9 7.2 59 152-210 4-74 (121)
378 1es9_A PAF-AH, platelet-activa 30.4 32 0.0011 29.7 3.1 49 151-199 115-179 (232)
379 3h16_A TIR protein; bacteria T 30.2 14 0.00046 31.5 0.6 46 332-378 84-153 (154)
380 3llu_A RAS-related GTP-binding 30.1 18 0.00063 30.4 1.4 24 251-274 19-42 (196)
381 3kkq_A RAS-related protein M-R 30.0 24 0.00081 28.8 2.1 29 247-275 13-41 (183)
382 2efe_B Small GTP-binding prote 29.9 18 0.00063 29.3 1.3 24 252-275 12-35 (181)
383 1vg8_A RAS-related protein RAB 29.8 22 0.00076 29.7 1.9 25 252-276 8-32 (207)
384 2fn4_A P23, RAS-related protei 29.7 23 0.00078 28.6 1.9 36 345-381 136-174 (181)
385 3llm_A ATP-dependent RNA helic 29.6 13 0.00046 32.8 0.5 32 332-367 159-191 (235)
386 1g41_A Heat shock protein HSLU 29.5 23 0.00078 36.0 2.2 26 254-279 52-78 (444)
387 2yan_A Glutaredoxin-3; oxidore 29.5 1.9E+02 0.0065 22.1 7.7 58 152-209 5-71 (105)
388 3nbx_X ATPase RAVA; AAA+ ATPas 29.5 19 0.00063 37.0 1.6 22 254-275 43-64 (500)
389 2i3b_A HCR-ntpase, human cance 29.4 19 0.00064 31.7 1.4 29 255-283 4-36 (189)
390 3ihw_A Centg3; RAS, centaurin, 29.2 25 0.00084 29.6 2.1 36 345-381 143-182 (184)
391 3pvs_A Replication-associated 29.2 24 0.00082 35.3 2.3 42 229-278 35-77 (447)
392 2v9p_A Replication protein E1; 29.0 19 0.00063 34.7 1.4 20 255-274 129-148 (305)
393 2oil_A CATX-8, RAS-related pro 28.7 22 0.00076 29.5 1.7 36 344-380 151-189 (193)
394 3tmk_A Thymidylate kinase; pho 28.6 18 0.00062 32.8 1.2 21 255-275 8-28 (216)
395 3of5_A Dethiobiotin synthetase 28.5 25 0.00085 31.8 2.1 28 255-282 7-39 (228)
396 1svm_A Large T antigen; AAA+ f 28.5 22 0.00077 35.0 1.9 27 254-280 171-198 (377)
397 1zd9_A ADP-ribosylation factor 27.9 24 0.00083 29.4 1.8 25 253-277 23-47 (188)
398 2z4s_A Chromosomal replication 27.8 20 0.00068 35.5 1.4 21 254-274 132-152 (440)
399 3aez_A Pantothenate kinase; tr 27.8 20 0.0007 34.1 1.5 19 255-273 93-111 (312)
400 1tue_A Replication protein E1; 27.7 19 0.00065 33.4 1.2 78 175-280 9-87 (212)
401 1zco_A 2-dehydro-3-deoxyphosph 27.6 98 0.0033 29.0 6.1 20 221-240 136-155 (262)
402 2p5s_A RAS and EF-hand domain 27.6 24 0.00082 29.7 1.7 25 252-276 28-52 (199)
403 1qop_A Tryptophan synthase alp 27.5 19 0.00067 33.3 1.2 104 156-260 114-235 (268)
404 2ew1_A RAS-related protein RAB 27.5 23 0.00079 30.5 1.7 23 253-275 27-49 (201)
405 3pqc_A Probable GTP-binding pr 27.5 46 0.0016 27.1 3.4 25 251-275 22-46 (195)
406 3cnl_A YLQF, putative uncharac 27.5 22 0.00077 32.8 1.6 33 253-285 100-133 (262)
407 4tmk_A Protein (thymidylate ki 27.4 20 0.00068 32.3 1.2 23 255-277 6-32 (213)
408 2j0v_A RAC-like GTP-binding pr 27.1 32 0.0011 29.0 2.4 38 343-381 141-182 (212)
409 3cpj_B GTP-binding protein YPT 27.0 25 0.00084 30.4 1.7 36 345-381 140-178 (223)
410 4fmw_A RNA (guanine-9-)-methyl 27.0 55 0.0019 29.7 4.1 44 245-288 112-158 (197)
411 1c1y_A RAS-related protein RAP 26.9 27 0.00091 27.7 1.8 23 253-275 4-26 (167)
412 2d00_A V-type ATP synthase sub 26.7 67 0.0023 26.4 4.2 46 147-192 28-76 (109)
413 1y8q_A Ubiquitin-like 1 activa 26.6 88 0.003 30.2 5.7 78 98-194 78-156 (346)
414 1sq5_A Pantothenate kinase; P- 26.6 22 0.00074 33.3 1.4 20 255-274 83-102 (308)
415 2vos_A Folylpolyglutamate synt 26.4 21 0.00072 36.0 1.3 27 256-282 65-96 (487)
416 1m7b_A RND3/RHOE small GTP-bin 26.4 26 0.00088 29.0 1.7 23 253-275 8-30 (184)
417 2o52_A RAS-related protein RAB 26.4 23 0.00077 30.0 1.3 38 345-383 152-192 (200)
418 2pcj_A ABC transporter, lipopr 26.3 22 0.00076 31.8 1.4 19 255-273 33-51 (224)
419 1cp2_A CP2, nitrogenase iron p 26.2 29 0.00099 30.8 2.1 26 257-282 6-35 (269)
420 2nzj_A GTP-binding protein REM 26.2 24 0.00083 28.3 1.5 35 346-381 134-171 (175)
421 2oze_A ORF delta'; para, walke 26.2 28 0.00097 31.6 2.0 22 260-281 45-70 (298)
422 2gf0_A GTP-binding protein DI- 26.1 27 0.00094 28.8 1.8 36 345-381 135-173 (199)
423 4gsl_A Ubiquitin-like modifier 26.0 49 0.0017 35.2 4.1 30 165-194 433-462 (615)
424 1pui_A ENGB, probable GTP-bind 26.0 18 0.0006 30.6 0.6 20 254-273 28-47 (210)
425 2bov_A RAla, RAS-related prote 25.7 27 0.00093 29.0 1.7 36 344-380 140-178 (206)
426 1z0j_A RAB-22, RAS-related pro 25.6 27 0.00094 27.7 1.7 23 253-275 7-29 (170)
427 2fna_A Conserved hypothetical 25.6 22 0.00075 32.2 1.2 21 254-274 32-52 (357)
428 2a9k_A RAS-related protein RAL 25.5 26 0.00088 28.4 1.5 37 344-381 144-183 (187)
429 2atv_A RERG, RAS-like estrogen 25.5 28 0.00096 29.1 1.8 26 252-277 28-53 (196)
430 1fzq_A ADP-ribosylation factor 25.5 22 0.00076 29.6 1.1 24 252-275 16-39 (181)
431 1w5s_A Origin recognition comp 25.5 21 0.00071 33.4 1.0 30 255-284 53-94 (412)
432 1tt5_A APPBP1, amyloid protein 25.4 1E+02 0.0035 31.8 6.2 30 165-194 126-155 (531)
433 3clv_A RAB5 protein, putative; 25.3 30 0.001 28.1 1.9 36 344-380 167-205 (208)
434 3abi_A Putative uncharacterize 25.3 28 0.00097 33.2 2.0 127 99-233 18-151 (365)
435 1r2q_A RAS-related protein RAB 25.3 26 0.0009 27.8 1.5 22 253-274 7-28 (170)
436 2lbw_A H/ACA ribonucleoprotein 25.1 1.2E+02 0.0041 25.0 5.6 42 166-209 40-82 (121)
437 1kao_A RAP2A; GTP-binding prot 25.1 30 0.001 27.2 1.8 23 253-275 4-26 (167)
438 3pxi_A Negative regulator of g 25.0 23 0.0008 37.2 1.4 22 254-275 523-544 (758)
439 1zj6_A ADP-ribosylation factor 25.0 35 0.0012 28.1 2.3 23 253-275 17-39 (187)
440 2gzm_A Glutamate racemase; enz 24.9 2.1E+02 0.0071 26.3 7.7 86 111-207 15-108 (267)
441 1fxw_F Alpha2, platelet-activa 24.8 40 0.0014 29.2 2.7 47 152-198 117-179 (229)
442 2qen_A Walker-type ATPase; unk 24.8 24 0.00081 32.0 1.2 23 254-276 33-56 (350)
443 3c5c_A RAS-like protein 12; GD 24.7 29 0.001 29.0 1.7 25 251-275 20-44 (187)
444 4hs4_A Chromate reductase; tri 24.6 1.7E+02 0.006 25.6 6.9 29 95-123 4-34 (199)
445 3m6a_A ATP-dependent protease 24.6 24 0.00083 36.0 1.4 21 254-274 110-130 (543)
446 1r6b_X CLPA protein; AAA+, N-t 24.6 31 0.0011 36.1 2.2 25 252-276 488-513 (758)
447 3f9v_A Minichromosome maintena 24.4 21 0.00073 37.0 1.0 23 253-275 328-350 (595)
448 3h8q_A Thioredoxin reductase 3 24.3 2.5E+02 0.0086 21.9 7.2 57 154-210 7-70 (114)
449 1r6b_X CLPA protein; AAA+, N-t 24.3 23 0.00079 37.1 1.2 23 253-275 208-230 (758)
450 3gmt_A Adenylate kinase; ssgci 24.3 30 0.001 32.0 1.9 29 254-282 10-39 (230)
451 1gwn_A RHO-related GTP-binding 24.2 29 0.001 29.8 1.7 23 253-275 29-51 (205)
452 3u61_B DNA polymerase accessor 24.2 29 0.00098 31.9 1.7 26 255-280 50-77 (324)
453 3r7w_B Gtpase2, GTP-binding pr 24.2 38 0.0013 33.2 2.6 19 255-273 2-20 (331)
454 3zyw_A Glutaredoxin-3; metal b 24.2 2.2E+02 0.0074 22.6 6.8 58 153-210 5-71 (111)
455 1htw_A HI0065; nucleotide-bind 24.2 27 0.00092 29.9 1.4 20 255-274 36-55 (158)
456 2x8g_A Thioredoxin glutathione 24.1 1.3E+02 0.0043 30.4 6.6 115 147-280 4-134 (598)
457 3t5g_A GTP-binding protein RHE 24.0 28 0.00096 28.3 1.5 40 344-384 132-174 (181)
458 3bwd_D RAC-like GTP-binding pr 23.9 32 0.0011 27.9 1.7 24 252-275 8-31 (182)
459 3tif_A Uncharacterized ABC tra 23.9 26 0.00089 31.7 1.3 19 255-273 34-52 (235)
460 3kta_A Chromosome segregation 23.8 20 0.0007 29.8 0.6 14 255-268 29-42 (182)
461 2ale_A SNU13, NHP2/L7AE family 23.8 58 0.002 27.8 3.4 43 166-210 52-95 (134)
462 2dhr_A FTSH; AAA+ protein, hex 23.8 26 0.00089 35.9 1.4 20 255-274 67-86 (499)
463 4dgh_A Sulfate permease family 23.6 1.3E+02 0.0046 24.0 5.5 105 97-210 20-130 (130)
464 1mv5_A LMRA, multidrug resista 23.5 27 0.00091 31.7 1.3 19 255-273 31-49 (243)
465 1wxq_A GTP-binding protein; st 23.5 26 0.00089 34.5 1.3 31 255-285 3-33 (397)
466 2hup_A RAS-related protein RAB 23.4 31 0.0011 29.2 1.7 37 344-381 155-195 (201)
467 3gd7_A Fusion complex of cysti 23.4 27 0.00091 34.7 1.4 20 255-274 50-69 (390)
468 1upt_A ARL1, ADP-ribosylation 23.4 33 0.0011 27.4 1.7 22 253-274 8-29 (171)
469 2qtf_A Protein HFLX, GTP-bindi 23.3 28 0.00095 33.9 1.5 30 255-284 182-211 (364)
470 3rlf_A Maltose/maltodextrin im 23.1 27 0.00093 34.7 1.4 19 255-273 32-50 (381)
471 2j1l_A RHO-related GTP-binding 23.1 28 0.00097 29.8 1.3 43 223-274 14-56 (214)
472 1g5t_A COB(I)alamin adenosyltr 23.1 42 0.0014 30.5 2.5 58 228-287 6-67 (196)
473 2fz4_A DNA repair protein RAD2 23.1 41 0.0014 30.1 2.4 32 233-275 100-131 (237)
474 3oes_A GTPase rhebl1; small GT 23.0 30 0.001 29.1 1.5 36 345-381 151-189 (201)
475 3hjn_A DTMP kinase, thymidylat 23.0 34 0.0012 30.0 1.9 26 255-280 3-32 (197)
476 4dsu_A GTPase KRAS, isoform 2B 23.0 34 0.0012 27.8 1.7 36 345-381 130-168 (189)
477 3cpq_A 50S ribosomal protein L 23.0 2.1E+02 0.0072 23.0 6.6 44 166-210 41-84 (110)
478 1svi_A GTP-binding protein YSX 22.9 31 0.0011 28.4 1.5 24 252-275 23-46 (195)
479 2fg5_A RAB-22B, RAS-related pr 22.9 32 0.0011 28.7 1.6 34 344-378 149-185 (192)
480 3elf_A Fructose-bisphosphate a 22.9 1.8E+02 0.0062 28.8 7.2 45 149-193 5-50 (349)
481 2eyu_A Twitching motility prot 22.8 28 0.00097 32.1 1.4 19 255-273 28-46 (261)
482 3j21_Z 50S ribosomal protein L 22.8 1.9E+02 0.0064 22.8 6.1 43 166-209 35-77 (99)
483 2xw6_A MGS, methylglyoxal synt 22.7 1.3E+02 0.0044 25.8 5.4 54 155-209 65-129 (134)
484 2onk_A Molybdate/tungstate ABC 22.5 29 0.001 31.6 1.4 19 255-273 27-45 (240)
485 4dkx_A RAS-related protein RAB 22.4 30 0.001 30.8 1.4 34 344-378 139-175 (216)
486 2ixe_A Antigen peptide transpo 22.4 29 0.00098 32.2 1.3 19 255-273 48-66 (271)
487 1ypw_A Transitional endoplasmi 22.3 24 0.00083 38.0 0.9 21 254-274 513-533 (806)
488 4b3f_X DNA-binding protein smu 22.2 46 0.0016 34.4 2.9 32 232-273 195-226 (646)
489 1y8q_B Anthracycline-, ubiquit 22.1 90 0.0031 33.3 5.2 30 165-194 110-139 (640)
490 3fvq_A Fe(3+) IONS import ATP- 22.1 29 0.001 34.1 1.4 19 255-273 33-51 (359)
491 1b0u_A Histidine permease; ABC 22.0 30 0.001 31.9 1.3 19 255-273 35-53 (262)
492 2atx_A Small GTP binding prote 22.0 39 0.0013 28.0 2.0 23 253-275 19-41 (194)
493 2h17_A ADP-ribosylation factor 22.0 34 0.0012 28.1 1.6 26 252-277 21-46 (181)
494 1m2o_B GTP-binding protein SAR 21.8 32 0.0011 28.9 1.4 23 253-275 24-46 (190)
495 2cjw_A GTP-binding protein GEM 21.8 37 0.0013 28.7 1.8 21 253-273 7-27 (192)
496 3h5n_A MCCB protein; ubiquitin 21.7 39 0.0013 32.8 2.2 30 165-194 210-240 (353)
497 3lxw_A GTPase IMAP family memb 21.6 36 0.0012 30.6 1.8 29 253-281 22-50 (247)
498 4gzl_A RAS-related C3 botulinu 21.6 40 0.0014 28.6 2.0 25 251-275 29-53 (204)
499 2cbz_A Multidrug resistance-as 21.6 31 0.0011 31.3 1.3 43 332-377 127-170 (237)
500 1uf9_A TT1252 protein; P-loop, 21.6 75 0.0026 26.5 3.7 65 300-379 126-193 (203)
No 1
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.68 E-value=9.6e-05 Score=61.83 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=74.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccCC-CC-----------CCc---cc----------cc------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMG-VE-----------LPK---SL----------FQ------------ 296 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp~-v~-----------lP~---~L----------~~------------ 296 (393)
|+|.|.|+||||=++-.||+ .|+.+.+-+.... .. +.+ .+ |.
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~ 83 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTER 83 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCHHHHHHHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHHHHHHHHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHH
Confidence 79999999999999999995 4877665443110 00 000 00 00
Q ss_pred ---------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016228 297 ---------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 367 (393)
Q Consensus 297 ---------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIE 367 (393)
..+..+|-|+.+++.+.+--..| +-+ ...-...+++.+..+.-...+. . .+-+||.+++++|
T Consensus 84 ~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r----~r~---~~~~~~~~~~~~~~~~~~~~~~-~-~~~~id~~~~~~~ 154 (173)
T 3kb2_A 84 QLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR----GDE---YIEGKDIDSILELYREVMSNAG-L-HTYSWDTGQWSSD 154 (173)
T ss_dssp HHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH----SCS---CCCHHHHHHHHHHHHHHHHTCS-S-CEEEEETTTSCHH
T ss_pred HHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc----CCc---chhhhHHHHHHHHHHHHHhhcC-C-CEEEEECCCCCHH
Confidence 13457899999999887633334 211 1111123334433333333333 2 5778999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 016228 368 ETAAVVLRLYHDRKHK 383 (393)
Q Consensus 368 EtAa~Il~~~~~r~~~ 383 (393)
|++..|++.++...++
T Consensus 155 ev~~~I~~~~~~~~~~ 170 (173)
T 3kb2_A 155 EIAKDIIFLVELEHHH 170 (173)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCcc
Confidence 9999999999876543
No 2
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.08 E-value=0.00033 Score=59.96 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=69.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCccccc---------------------------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPKSLFQ--------------------------------- 296 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp----~v~lP~~L~~--------------------------------- 296 (393)
|+|+|.++||||-++-.||+ .|+.+-+.--+- +.++++ +|+
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~~~ 86 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAW-IFEMEGEAGFRRREREMIEALCKLDNIILATGGGVV 86 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhh-HHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCcee
Confidence 89999999999999999995 477655431110 111111 000
Q ss_pred c---------CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHHHhhhCCCCcEEeCCCc
Q 016228 297 V---------DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGRIFAQNPVWPVIEVTGK 364 (393)
Q Consensus 297 i---------~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs---~e~I~~EL~~A~~lf~k~~g~pVIDVT~k 364 (393)
. ....+|=|+.+++.|. +|+...+-. ....+.+ .+.++.=...-+.+|++. ..-+||+++.
T Consensus 87 ~~~~~~~~l~~~~~vi~L~~~~e~l~----~Rl~~~~~~--~rp~~~~~~~~~~l~~~~~~r~~~y~~~-ad~~Idt~~~ 159 (185)
T 3trf_A 87 LDEKNRQQISETGVVIYLTASIDTQL----KRIGQKGEM--RRPLFIKNNSKEKLQQLNEIRKPLYQAM-ADLVYPTDDL 159 (185)
T ss_dssp GSHHHHHHHHHHEEEEEEECCHHHHH----HHHHCCTTC--SSCCCCCHHHHHHHHHHHHHHHHHHHHH-CSEEEECTTC
T ss_pred cCHHHHHHHHhCCcEEEEECCHHHHH----HHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhhc-CCEEEECCCC
Confidence 0 0124677788877653 455111100 0112233 234444344445567663 4679999999
Q ss_pred cHHHHHHHHHHHHhhc
Q 016228 365 AIEETAAVVLRLYHDR 380 (393)
Q Consensus 365 SIEEtAa~Il~~~~~r 380 (393)
++||++..|++.+..+
T Consensus 160 ~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 160 NPRQLATQILVDIKQT 175 (185)
T ss_dssp CHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988654
No 3
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.03 E-value=0.00084 Score=58.64 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=72.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----------CCCC-----------------------------Cc--
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----------GVEL-----------------------------PK-- 292 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp----------~v~l-----------------------------P~-- 292 (393)
|+|+|.|++|||=++-.||. .|+.+-+---+. +..+ -+
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~~~~~~~~ 100 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSY 100 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEECCCCSHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 99999999999999999995 487655321110 0000 00
Q ss_pred --ccccc--CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHH
Q 016228 293 --SLFQV--DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEE 368 (393)
Q Consensus 293 --~L~~i--~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEE 368 (393)
.|.+. .+..+|-|+.+++.|.+--..|- ..+.+.+.++.-++..+.++... .+-+||++ .++||
T Consensus 101 ~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~-~~~~e 168 (202)
T 3t61_A 101 RDKLRESAPGGLAFVFLHGSESVLAERMHHRT----------GHFMPSSLLQTQLETLEDPRGEV-RTVAVDVA-QPLAE 168 (202)
T ss_dssp HHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH----------SSCCCHHHHHHHHHHCCCCTTST-TEEEEESS-SCHHH
T ss_pred HHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh----------ccCCCHHHHHHHHHhcCCCCCCC-CeEEEeCC-CCHHH
Confidence 11111 11368999999988876334443 12334555554444444445443 57789988 99999
Q ss_pred HHHHHHHHHhhc
Q 016228 369 TAAVVLRLYHDR 380 (393)
Q Consensus 369 tAa~Il~~~~~r 380 (393)
++..|++.+...
T Consensus 169 ~~~~I~~~l~~~ 180 (202)
T 3t61_A 169 IVREALAGLARL 180 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 4
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.98 E-value=0.003 Score=54.47 Aligned_cols=68 Identities=24% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh----hhCCCCcEEeCCCccHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF----AQNPVWPVIEVTGKAIEETAAVVL 374 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf----~k~~g~pVIDVT~kSIEEtAa~Il 374 (393)
...+|=|+.+++.+.+-+..|. +.+.+.+++.+..-...+ .+...+-+||.+++++||++..|+
T Consensus 136 ~d~~i~l~a~~e~~~~R~~~r~------------~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~ 203 (208)
T 3ake_A 136 AAHKFYLTASPEVRAWRRARER------------PQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVL 203 (208)
T ss_dssp CSEEEEEECCHHHHHHHHHHTS------------SSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhhc------------ccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHH
Confidence 4568889999988765333331 145577777666444444 333235899999999999999999
Q ss_pred HHHh
Q 016228 375 RLYH 378 (393)
Q Consensus 375 ~~~~ 378 (393)
+++.
T Consensus 204 ~~~~ 207 (208)
T 3ake_A 204 AHIR 207 (208)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
No 5
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.98 E-value=0.0042 Score=57.12 Aligned_cols=76 Identities=13% Similarity=0.041 Sum_probs=47.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--------hCCCCcEEeCCCccHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA--------QNPVWPVIEVTGKAIEETA 370 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~--------k~~g~pVIDVT~kSIEEtA 370 (393)
....|-|+.+++...+-|...++..|.. .+.+.+.+++..-...-. +...--+||+|++++||++
T Consensus 163 ~~~~ifl~A~~e~r~~R~~~~l~~~~~~-------~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~ 235 (252)
T 4e22_A 163 APVKIFLDASSQERAHRRMLQLQERGFN-------VNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVI 235 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHH
Confidence 3456789999987666555445444431 356777766633222111 1101258999999999999
Q ss_pred HHHHHHHhhcc
Q 016228 371 AVVLRLYHDRK 381 (393)
Q Consensus 371 a~Il~~~~~r~ 381 (393)
..|++++..+.
T Consensus 236 ~~I~~~i~~~~ 246 (252)
T 4e22_A 236 EQALAYAQRIL 246 (252)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999997653
No 6
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.92 E-value=0.0067 Score=53.28 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=47.6
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---------HHhhhCCCCcEEeCCCccHHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---------RIFAQNPVWPVIEVTGKAIEETA 370 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~---------~lf~k~~g~pVIDVT~kSIEEtA 370 (393)
..+|=|+.+++.+.+-+..|+..-|+ ..+.+.+++.+..-. .++... ..-+||++++++||++
T Consensus 137 ~~vi~l~a~~e~~~~R~~~~~~~r~~-------~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~-d~~~Id~~~~~~ee~~ 208 (219)
T 2h92_A 137 DLKVYMIASVEERAERRYKDNQLRGI-------ESNFEDLKRDIEARDQYDMNREISPLRKAD-DAVTLDTTGKSIEEVT 208 (219)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHCSSSCSCCCT-TCEEEECTTCCHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCc-------ccCHHHHHHHHHHHHHhhhhhhccccccCC-CeEEEECCCCCHHHHH
Confidence 45788888888776643333322232 135677777664221 234332 4589999999999999
Q ss_pred HHHHHHHhhcc
Q 016228 371 AVVLRLYHDRK 381 (393)
Q Consensus 371 a~Il~~~~~r~ 381 (393)
..|++++..+|
T Consensus 209 ~~I~~~l~~~~ 219 (219)
T 2h92_A 209 DEILAMVSQIK 219 (219)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHhccC
Confidence 99999987653
No 7
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.78 E-value=0.0025 Score=54.40 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=72.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc----CCCCC--------------------------Cccccc-------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV----MGVEL--------------------------PKSLFQ------- 296 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvPLV----p~v~l--------------------------P~~L~~------- 296 (393)
|+|+|.++||||=++-.|| ..|+..-+.=.+ .+.++ ...++.
T Consensus 7 i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~~~ 86 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGFVN 86 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCCEeh
Confidence 8999999999999999999 457654322000 00000 000000
Q ss_pred ----cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHH
Q 016228 297 ----VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 297 ----i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~ 372 (393)
.+...+|-|+.+++.+.+-...|.. . . .....+.+.+++-+..-..+|.+. ..-+||++++++||++..
T Consensus 87 ~~~l~~~~~~i~l~~~~e~~~~R~~~r~~--~-~---r~~~~~~~~i~~~~~~r~~~y~~~-~~~~Idt~~~~~eev~~~ 159 (175)
T 1via_A 87 VSNLEKAGFCIYLKADFEYLKKRLDKDEI--S-K---RPLFYDEIKAKKLYNERLSKYEQK-ANFILNIENKNIDELLSE 159 (175)
T ss_dssp STTGGGGCEEEEEECCHHHHTTCCCGGGT--T-T---SCTTCCHHHHHHHHHHHHHHHHHH-CSEEEECTTCCHHHHHHH
T ss_pred hhHHhcCCEEEEEeCCHHHHHHHHhcccC--C-C---CCCcccHHHHHHHHHHHHHHHHhc-CCEEEECCCCCHHHHHHH
Confidence 0234688899998876542222210 0 1 112233666666555555677664 578999999999999999
Q ss_pred HHHHHhhc
Q 016228 373 VLRLYHDR 380 (393)
Q Consensus 373 Il~~~~~r 380 (393)
|++.+..-
T Consensus 160 I~~~l~~~ 167 (175)
T 1via_A 160 IKKVIKEG 167 (175)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhc
Confidence 99998643
No 8
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.0023 Score=52.75 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=69.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec-----------------------------c--------------------cc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANV-----------------------------P--------------------IV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANv-----------------------------P--------------------LV 285 (393)
|+|.|.++||||=++-.|...|+.+... + ++
T Consensus 4 I~l~G~~GsGKsT~a~~L~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~ 83 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVF 83 (179)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 7899999999999999997779887662 0 00
Q ss_pred CCCCCCc------cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH----HHHHHHhhhCCC
Q 016228 286 MGVELPK------SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREEL----EFAGRIFAQNPV 355 (393)
Q Consensus 286 p~v~lP~------~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL----~~A~~lf~k~~g 355 (393)
.++.-|. .++. .+..+|-|+.+++.+.+ |+..-+-. ..-.+.+.+.+.+ .+....+.+. .
T Consensus 84 dg~~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~----R~~~R~~~----~~~~~~~~~~~r~~~~~~~~~~~~~~~-a 153 (179)
T 3lw7_A 84 DGVRSLAEVEEFKRLLG-DSVYIVAVHSPPKIRYK----RMIERLRS----DDSKEISELIRRDREELKLGIGEVIAM-A 153 (179)
T ss_dssp ECCCCHHHHHHHHHHHC-SCEEEEEEECCHHHHHH----HHHTCC--------CCCHHHHHHHHHHHHHHTHHHHHHT-C
T ss_pred eCCCCHHHHHHHHHHhC-CCcEEEEEECCHHHHHH----HHHhccCC----CCcchHHHHHHHHHhhhccChHhHHHh-C
Confidence 0111011 1111 22368889999877654 44322211 1113455554443 2223345554 5
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhh
Q 016228 356 WPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 356 ~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
.-+||.++ ++||++..|.+++..
T Consensus 154 d~vId~~~-~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 154 DYIITNDS-NYEEFKRRCEEVTDR 176 (179)
T ss_dssp SEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CEEEECCC-CHHHHHHHHHHHHHH
Confidence 67899666 999999999998864
No 9
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.0039 Score=54.62 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=73.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc-C---CCCC--------------------------Cccccc-------
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV-M---GVEL--------------------------PKSLFQ------- 296 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvPLV-p---~v~l--------------------------P~~L~~------- 296 (393)
|+|+|.|+||||=++-.|| ..|+...+.--+ . +..+ ...+..
T Consensus 28 i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~ 107 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGGGAPC 107 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCCcEEc
Confidence 8999999999999999999 457665432110 0 0000 000100
Q ss_pred --------cCCCcEEEEecChhHHHH-HHHHHHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHhhhCCCCcEEeCCCccH
Q 016228 297 --------VDPEKVFGLTINPLVLQS-IRKARARSLGFRDEIRSNYSE-MDYVREELEFAGRIFAQNPVWPVIEVTGKAI 366 (393)
Q Consensus 297 --------i~~~KI~GLTIdP~rL~~-IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSI 366 (393)
.....+|-|+.+++.|.+ +++.|. .-.+- .+....+ .+.+++-++....+|++ ..-+||++++++
T Consensus 108 ~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~-~Rp~~--~~~~~~~~~~~i~~~~~~r~~~y~~--ad~~Idt~~~s~ 182 (199)
T 3vaa_A 108 FYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQ-QRPIL--QGKEDDELMDFIIQALEKRAPFYTQ--AQYIFNADELED 182 (199)
T ss_dssp STTHHHHHHHHSEEEEEECCHHHHHHHHHHTGG-GCGGG--TTCCHHHHHHHHHHHHHHHHHHHTT--SSEEEECCCCSS
T ss_pred cHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCC-CCCCc--CCCChhhHHHHHHHHHHHHHHHHhh--CCEEEECCCCCH
Confidence 013568889999988865 221111 00000 0111111 34566666666677776 367999999999
Q ss_pred HHHHHHHHHHHhhc
Q 016228 367 EETAAVVLRLYHDR 380 (393)
Q Consensus 367 EEtAa~Il~~~~~r 380 (393)
||++..|++.+...
T Consensus 183 ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 183 RWQIESSVQRLQEL 196 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 10
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0079 Score=50.94 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=44.0
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH----HH---HHhhhCCCCcEEeCCCccHHHHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF----AG---RIFAQNPVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~----A~---~lf~k~~g~pVIDVT~kSIEEtAa~ 372 (393)
..+|-|+.+++.+.+-...|-..-+-. -.+.+.+++.+.. .+ ..|.+.-.|.+||.+ +++||++..
T Consensus 115 ~~~i~l~~~~e~~~~R~~~R~~~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~-~~~~~v~~~ 187 (196)
T 1tev_A 115 SFVLFFDCNNEICIERCLERGKSSGRS------DDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS-KSVDEVFDE 187 (196)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHTSSCC------SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETT-SCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHcccccCCCC------CCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECC-CCHHHHHHH
Confidence 468899999988766444453211211 1123444333322 11 145553235689988 999999999
Q ss_pred HHHHHhh
Q 016228 373 VLRLYHD 379 (393)
Q Consensus 373 Il~~~~~ 379 (393)
|++.+..
T Consensus 188 i~~~l~~ 194 (196)
T 1tev_A 188 VVQIFDK 194 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998864
No 11
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.43 E-value=0.0036 Score=53.48 Aligned_cols=118 Identities=23% Similarity=0.221 Sum_probs=67.3
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeecccc-------------------C-------------------CCCCCccc
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV-------------------M-------------------GVELPKSL 294 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLV-------------------p-------------------~v~lP~~L 294 (393)
=|+|.|.|+||||=++-.|| ..|+.+.+.--+ . .... ..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~~~~-~~~ 91 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHG-CDF 91 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEEECSC-CTT
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEEEech-hhh
Confidence 38999999999999999999 458776544110 0 0000 111
Q ss_pred ccc-CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHH---
Q 016228 295 FQV-DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEET--- 369 (393)
Q Consensus 295 ~~i-~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~Y-As~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEt--- 369 (393)
|.- ....+|=|+.+++.|.+--.+| |... +.... ...+.++.-++....+|.. ..+||++++++||+
T Consensus 92 ~~~~~~~~vi~L~~~~e~l~~R~~~r----~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~---~~~i~~~~~~~~ev~~~ 163 (180)
T 3iij_A 92 FPERWFHIVFVLRTDTNVLYERLETR----GYNE-KKLTDNIQCEIFQVLYEEATASYKE---EIVHQLPSNKPEELENN 163 (180)
T ss_dssp SCGGGCSEEEEEECCHHHHHHHHHHT----TCCH-HHHHHHHHHHHTTHHHHHHHHHSCG---GGEEEEECSSHHHHHHH
T ss_pred cchhcCCEEEEEECCHHHHHHHHHHc----CCCH-HHHHHHHHHHHHHHHHHHHHHHcCC---CeEEEcCCCCHHHHHHH
Confidence 110 1356888999999887633333 2110 00000 0011222223334444542 57999999999999
Q ss_pred HHHHHHHHhhc
Q 016228 370 AAVVLRLYHDR 380 (393)
Q Consensus 370 Aa~Il~~~~~r 380 (393)
+..|++.+...
T Consensus 164 v~~i~~~l~~~ 174 (180)
T 3iij_A 164 VDQILKWIEQW 174 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677766553
No 12
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.43 E-value=0.0083 Score=51.24 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=40.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHhhhCC-CCcEEeCCCccHHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFAQNP-VWPVIEVTGKAIEETAAVVLR 375 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-~~lf~k~~-g~pVIDVT~kSIEEtAa~Il~ 375 (393)
.++.+|=|+.+|+.+.+-...| + .|... .+.+.+... .++..+.. .|-+||. +.++||+...|++
T Consensus 121 ~~d~vi~l~~~~e~~~~Rl~~R----~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id~-~~~~e~~~~~i~~ 187 (197)
T 2z0h_A 121 IPDLTFYIDVDVETALKRKGEL----N-------RFEKR-EFLERVREGYLVLAREHPERIVVLDG-KRSIEEIHRDVVR 187 (197)
T ss_dssp CCSEEEEEECCHHHHHHHC-------C-------CCCCH-HHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhcc----C-------cccHH-HHHHHHHHHHHHHHHhCCCCEEEEeC-CCCHHHHHHHHHH
Confidence 3567899999998765533333 1 23332 333333322 22333221 3678994 6899999999999
Q ss_pred HHhhc
Q 016228 376 LYHDR 380 (393)
Q Consensus 376 ~~~~r 380 (393)
.+...
T Consensus 188 ~l~~~ 192 (197)
T 2z0h_A 188 EVKRR 192 (197)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 88653
No 13
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.33 E-value=0.031 Score=50.24 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=45.5
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH----------HhhhCCCCcEEeCCCccHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGR----------IFAQNPVWPVIEVTGKAIEET 369 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~----------lf~k~~g~pVIDVT~kSIEEt 369 (393)
..+|-|+.+++.+.+-|..|+..-|. ..+.+.+.+.+.. +. ++... ..-+||++++++||+
T Consensus 154 d~vi~L~a~~e~~~~R~~~~~~~R~~-------~~~~e~~~~~i~~-R~~~~~~~~~~p~~~~~-d~~vId~~~~s~eev 224 (236)
T 1q3t_A 154 ELKIFLVASVDERAERRYKENIAKGI-------ETDLETLKKEIAA-RDYKDSHRETSPLKQAE-DAVYLDTTGLNIQEV 224 (236)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHH-HHHHHTTCSSSCCSCCT-TCEEEECSSCCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHH-HhhhhhhcccccccccC-CEEEEcCCCCCHHHH
Confidence 45788999998877644334322222 1245666666532 11 33331 347899999999999
Q ss_pred HHHHHHHHhh
Q 016228 370 AAVVLRLYHD 379 (393)
Q Consensus 370 Aa~Il~~~~~ 379 (393)
+..|++++..
T Consensus 225 ~~~I~~~l~~ 234 (236)
T 1q3t_A 225 VEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 14
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.28 E-value=0.011 Score=50.54 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=43.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hCCCCcEEeCCCccHHHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA-QNPVWPVIEVTGKAIEETAAVVLRL 376 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~-k~~g~pVIDVT~kSIEEtAa~Il~~ 376 (393)
.++.+|-|+.+++.+.+--.+|-+.+.. ...-.-.+++.+....-...|+ +. .+-+||.++ ++||++..|++.
T Consensus 124 ~~d~vi~L~~~~e~~~~Rl~~R~r~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~Id~~~-~~~~v~~~I~~~ 197 (205)
T 2jaq_A 124 SFDIVIYLRVSTKTAISRIKKRGRSEEL----LIGEEYWETLNKNYEEFYKQNVYDF-PFFVVDAEL-DVKTQIELIMNK 197 (205)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHTCHHHH----HSCHHHHHHHHHHHHHHHHHHTTTS-CEEEEETTS-CHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCChhhh----cCcHHHHHHHHHHHHHHHHHccccC-cEEEEECCC-CHHHHHHHHHHH
Confidence 3557999999998776521233111100 0000111233333322233454 32 577899887 999999999999
Q ss_pred Hhhc
Q 016228 377 YHDR 380 (393)
Q Consensus 377 ~~~r 380 (393)
+...
T Consensus 198 l~~~ 201 (205)
T 2jaq_A 198 LNSI 201 (205)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8653
No 15
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.18 E-value=0.0071 Score=53.00 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=46.2
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 301 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 301 KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
.+|.|+.+++.|.+ |+..-+ ..+...+.++..++..+.+|.+. ..-+||++ .++||++..|++.+...
T Consensus 127 ~vv~l~~~~e~l~~----Rl~~R~------~~~~~~~~l~~~~~~~~~~~~~~-~~~~Id~~-~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 127 DFLHLDGPAEVIKG----RMSKRE------GHFMPASLLQSQLATLEALEPDE-SGIVLDLR-QPPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEEEECCHHHHHH----HHTTCS------CCSSCGGGHHHHHHHCCCCCTTS-CEEEEETT-SCHHHHHHHHHHHHCCC
T ss_pred EEEEEeCCHHHHHH----HHHhcc------cCCCCHHHHHHHHHHhCCCCCCC-CeEEEECC-CCHHHHHHHHHHHHHhc
Confidence 57899999877643 553221 22344556666555555666664 57789986 59999999999999654
No 16
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.17 E-value=0.03 Score=47.74 Aligned_cols=117 Identities=11% Similarity=0.192 Sum_probs=69.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc----------------------------------ccC---------CC--
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANVP----------------------------------IVM---------GV-- 288 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANvP----------------------------------LVp---------~v-- 288 (393)
|+|.|.++||||=++-.|| ..|+++.+.- ++. +-
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~v 91 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGF 91 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcE
Confidence 8999999999999999999 5688765320 000 00
Q ss_pred ---CCCccc---------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHH-------
Q 016228 289 ---ELPKSL---------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGR------- 348 (393)
Q Consensus 289 ---~lP~~L---------~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA-s~e~I~~EL~~A~~------- 348 (393)
..|..+ + ..+..+|-|+.+++.+.+--..|-. . ...+. +.+.+++.+....+
T Consensus 92 i~d~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~~----~---~~~~~~~~~~~~~r~~~~~~~~~~~~~ 163 (196)
T 2c95_A 92 LIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPETMTQRLLKRGE----T---SGRVDDNEETIKKRLETYYKATEPVIA 163 (196)
T ss_dssp EEESCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHT----S---SSCGGGSHHHHHHHHHHHHHHTHHHHH
T ss_pred EEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHccCC----c---CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 112211 1 2456899999999887663333421 1 11222 23333333332211
Q ss_pred HhhhCCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 349 IFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 349 lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
.|...-.|-+||. +.++||++..|++.+...
T Consensus 164 ~~~~~~~~~~Id~-~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 164 FYEKRGIVRKVNA-EGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHTCEEEEEC-CSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEEC-CCCHHHHHHHHHHHHHHh
Confidence 2443102567995 499999999999988653
No 17
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.14 E-value=0.0045 Score=57.99 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=75.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeeccccC-----CCCCCc-------------------cccc------------
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM-----GVELPK-------------------SLFQ------------ 296 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp-----~v~lP~-------------------~L~~------------ 296 (393)
=|+|+|.|++|||=++-.||. .|+......-+- +..++. +|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG 129 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGG 129 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCC
Confidence 399999999999999999994 787665433210 111111 0000
Q ss_pred ----------cCCCcEEEEecChhHHHHHHHHH-HhhcCCCCC--CCCCC-CCHHHHHHHHHHHHHHhhhCCCCcE----
Q 016228 297 ----------VDPEKVFGLTINPLVLQSIRKAR-ARSLGFRDE--IRSNY-SEMDYVREELEFAGRIFAQNPVWPV---- 358 (393)
Q Consensus 297 ----------i~~~KI~GLTIdP~rL~~IR~eR-l~~lGl~~~--~~S~Y-As~e~I~~EL~~A~~lf~k~~g~pV---- 358 (393)
...+.+|=|+.+++.|.+-...| ...-++-.. +...+ ...+++++-++.-..+|.+. ..-|
T Consensus 130 ~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~a-d~vi~~~~ 208 (250)
T 3nwj_A 130 AVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKA-SARVSLEN 208 (250)
T ss_dssp GGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTS-SEEEEHHH
T ss_pred eecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhC-CEEEEecc
Confidence 01144788999998877632211 001111100 00000 01466777777777888774 4444
Q ss_pred -------EeCCCccHHHHHHHHHHHHhhcc
Q 016228 359 -------IEVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 359 -------IDVT~kSIEEtAa~Il~~~~~r~ 381 (393)
||+|++++||++..|++.+....
T Consensus 209 ~~~~~~~iDTs~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 209 ITLKLGYRSVSDLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp HHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 39999999999999999997653
No 18
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.14 E-value=0.0057 Score=51.48 Aligned_cols=42 Identities=5% Similarity=0.080 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 336 MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 336 ~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
.+.++.-+.....+|++. ..-+||+++.++||++..|++.+.
T Consensus 130 ~~~~~~~~~~r~~~~~~~-a~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 130 REVLEALANERNPLYEEI-ADVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HHHHHHHHHHHHHHHHHH-CSEEC-----CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 455655555545677764 578999999999999999999874
No 19
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.07 E-value=0.013 Score=49.65 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=65.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeecc------------------------------------------ccCCCCCC
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVP------------------------------------------IVMGVELP 291 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvP------------------------------------------LVp~v~lP 291 (393)
|+|+|.|++|||=++-.||. .|+.+-+-= +|-+...+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 90 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSAL 90 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEECCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEEEEeCch
Confidence 88999999999999999984 476544310 01111111
Q ss_pred cc----cc-ccCCC-cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-hhhCCCCcEEeCCCc
Q 016228 292 KS----LF-QVDPE-KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI-FAQNPVWPVIEVTGK 364 (393)
Q Consensus 292 ~~----L~-~i~~~-KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~l-f~k~~g~pVIDVT~k 364 (393)
.+ ++ +...+ .+|-|+.+++.+.+ |+..-+ ..+.+.+.+...+...+.+ |.+. ..-+||++ .
T Consensus 91 ~~~~~~~l~~~~~~~~vv~l~~~~e~~~~----R~~~R~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~-~ 158 (175)
T 1knq_A 91 KKHYRDLLREGNPNLSFIYLKGDFDVIES----RLKARK------GHFFKTQMLVTQFETLQEPGADET-DVLVVDID-Q 158 (175)
T ss_dssp SHHHHHHHHTTCTTEEEEEEECCHHHHHH----HHHTST------TCCCCHHHHHHHHHHCCCCCTTCT-TEEEEECS-S
T ss_pred HHHHHHHHHhcCCCEEEEEEECCHHHHHH----HHHhcc------CCCCchHHHHHHHHhhhCcccCCC-CeEEEeCC-C
Confidence 00 11 11112 68888888876543 443211 1222344444333322233 3443 46789976 8
Q ss_pred cHHHHHHHHHHHHhh
Q 016228 365 AIEETAAVVLRLYHD 379 (393)
Q Consensus 365 SIEEtAa~Il~~~~~ 379 (393)
++||++..|++.+..
T Consensus 159 ~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 159 PLEGVVASTIEVIKK 173 (175)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998854
No 20
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.94 E-value=0.038 Score=48.39 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=45.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH------H---HHHhhhCCCCcEEeCCCccHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF------A---GRIFAQNPVWPVIEVTGKAIEET 369 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~------A---~~lf~k~~g~pVIDVT~kSIEEt 369 (393)
.+.+|=|+.+++.+.+-|..++..-|.. .+.+.+.+++.. - +.++... .+-+||.++.++||+
T Consensus 141 ~d~~i~l~~~~e~~~~R~~~~l~~rg~~-------~~~~~~~~~i~~R~~~~~~~~~~pl~~~~-~~~~Id~~~~~~~ev 212 (227)
T 1cke_A 141 APVKIFLDASSEERAHRRMLQLQVKGFS-------VNFERLLAEIKERDDRDRNRAVAPLVPAA-DALVLDSTTLSIEQV 212 (227)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHC-------------CCCCT-TCEEEETTTSCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCcc-------CCHHHHHHHHHHHHHhhhhhcccCccCCC-CEEEEeCCCCCHHHH
Confidence 4567889999987666444433222431 234555555431 1 2232221 347899998999999
Q ss_pred HHHHHHHHhhc
Q 016228 370 AAVVLRLYHDR 380 (393)
Q Consensus 370 Aa~Il~~~~~r 380 (393)
...|++.+...
T Consensus 213 ~~~I~~~l~~~ 223 (227)
T 1cke_A 213 IEKALQYARQK 223 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 21
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.86 E-value=0.04 Score=46.45 Aligned_cols=118 Identities=16% Similarity=0.200 Sum_probs=69.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec-------c-----cc--------CCCCCCcc------------------c-
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANV-------P-----IV--------MGVELPKS------------------L- 294 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANv-------P-----LV--------p~v~lP~~------------------L- 294 (393)
|+|.|.++||||=++-.||+ .|+.+-+. | +- .+...|.. +
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~vi~ 88 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLV 88 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 89999999999999999995 58877654 1 00 01111110 0
Q ss_pred ------------c----c--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHH
Q 016228 295 ------------F----Q--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRI 349 (393)
Q Consensus 295 ------------~----~--i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-------~~l 349 (393)
+ + ..+..+|-|+.+++.+.+--..|-...+- .. .+.+.+++.+... .+.
T Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r-----~~-~~~~~~~~ri~~~~~~~~~~~~~ 162 (194)
T 1qf9_A 89 DGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGR-----SD-DNIESIKKRFNTFNVQTKLVIDH 162 (194)
T ss_dssp ETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCC-----TT-CSHHHHHHHHHHHHHTHHHHHHH
T ss_pred eCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCC-----CC-CCHHHHHHHHHHHHHhHHHHHHH
Confidence 1 1 02346889999998776533344211111 11 1234444433321 234
Q ss_pred hhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 350 FAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 350 f~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
|++.-.|-+||.+ .++||++..|.+.+..
T Consensus 163 ~~~~~~~~~id~~-~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 163 YNKFDKVKIIPAN-RDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHTTCEEEEECS-SCHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEECC-CCHHHHHHHHHHHHHH
Confidence 4443125789987 8999999999998864
No 22
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.83 E-value=0.084 Score=45.78 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=70.7
Q ss_pred CCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCceeeec------------c-------------ccCC--------
Q 016228 242 DDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKVANV------------P-------------IVMG-------- 287 (393)
Q Consensus 242 DDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~-~G~KVANv------------P-------------LVp~-------- 287 (393)
|-|-.......-=|+|.|.++||||=++-.||. .|+.+-+. + +++.
T Consensus 10 ~~~~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~ 89 (201)
T 2cdn_A 10 HSSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVD 89 (201)
T ss_dssp ------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 444333333333499999999999999999994 69887654 1 1110
Q ss_pred --CC------------CCcc----------ccc--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHH
Q 016228 288 --VE------------LPKS----------LFQ--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVRE 341 (393)
Q Consensus 288 --v~------------lP~~----------L~~--i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~ 341 (393)
+. .|.. |.+ ..+..+|-|+++++.+.+ |+..-|-. . .+.+.+++
T Consensus 90 ~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~----Rl~~R~r~---~---~~~e~~~~ 159 (201)
T 2cdn_A 90 DRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE----RLKGRGRA---D---DTDDVILN 159 (201)
T ss_dssp HHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHH----HHHHHCCT---T---CSHHHHHH
T ss_pred HHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHH----HHHcCCCC---C---CCHHHHHH
Confidence 00 0211 111 124579999999987654 33222211 1 23444544
Q ss_pred HHHHHHH-------HhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 342 ELEFAGR-------IFAQNPVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 342 EL~~A~~-------lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
-++...+ .| .. .+-+||. +.++||++..|++.+.
T Consensus 160 r~~~~~~~~~~~~~~~-~~-~~~~Id~-~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 160 RMKVYRDETAPLLEYY-RD-QLKTVDA-VGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHTTTHHHHT-TT-TEEEEEC-CSCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHh-cC-cEEEEeC-CCCHHHHHHHHHHHHc
Confidence 4433221 23 32 4778997 5899999999998774
No 23
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.74 E-value=0.011 Score=50.04 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cC-----ceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KG-----YKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G-----~KVAN 281 (393)
|+|.|+++||||=++-.||. .| +.+-+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 89999999999999999994 56 66544
No 24
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.70 E-value=0.027 Score=47.40 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=67.4
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeec----------cc---cC--CC---------------CCCcc-ccc-----
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGYKVANV----------PI---VM--GV---------------ELPKS-LFQ----- 296 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~KVANv----------PL---Vp--~v---------------~lP~~-L~~----- 296 (393)
-|+|.|.++||||=++-.||. .|+++-.. ++ +. +- ..... +..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~g~ 88 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGI 88 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCCCE
Confidence 489999999999999999995 68876431 10 00 00 00000 000
Q ss_pred ------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHH
Q 016228 297 ------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETA 370 (393)
Q Consensus 297 ------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtA 370 (393)
.....+|=|+.+++.+.+ |+..-+... ...+.+.+++++-+..-...|.+. ..-+||+++ ++||++
T Consensus 89 ~~~~~l~~~~~vi~l~~~~e~~~~----Rl~~r~~~~--r~~~~~~~~~~~~~~~r~~~~~~~-a~~~Id~~~-~~e~~~ 160 (168)
T 1zuh_A 89 VMHENLKGLGTTFYLKMDFETLIK----RLNQKEREK--RPLLNNLTQAKELFEKRQALYEKN-ASFIIDARG-GLNNSL 160 (168)
T ss_dssp GGCGGGTTSEEEEEEECCHHHHHH----HHCC----------CCTTHHHHHHHHHHHHHHHHT-CSEEEEGGG-CHHHHH
T ss_pred echhHHhcCCEEEEEECCHHHHHH----HHhccCCCC--CCCccCHHHHHHHHHHHHHHHHHH-CCEEEECCC-CHHHHH
Confidence 123468889999986544 442110000 011112455554444444567664 578999998 999999
Q ss_pred HHHHHHH
Q 016228 371 AVVLRLY 377 (393)
Q Consensus 371 a~Il~~~ 377 (393)
..|++++
T Consensus 161 ~~I~~~l 167 (168)
T 1zuh_A 161 KQVLQFI 167 (168)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998765
No 25
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.68 E-value=0.048 Score=48.89 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=25.2
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
=|+|+|.++||||=++-.|| ..|+.+-..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 39999999999999999999 578877654
No 26
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.50 E-value=0.028 Score=48.61 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=66.3
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceeeecc-------ccCCC-------CC---Cc-----------------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQK--GYKVANVP-------IVMGV-------EL---PK----------------------- 292 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~--G~KVANvP-------LVp~v-------~l---P~----------------------- 292 (393)
|+|+|.++||||=++-+||.+ |+.+.+.= +.... -+ ++
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~~vi~~~~ 92 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHS 92 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEEEEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCCEEEeCch
Confidence 999999999999999999966 98776521 11100 01 10
Q ss_pred -ccccc-CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-----HHHHHHHhhhCCCCcEEeCCCcc
Q 016228 293 -SLFQV-DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-----LEFAGRIFAQNPVWPVIEVTGKA 365 (393)
Q Consensus 293 -~L~~i-~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~E-----L~~A~~lf~k~~g~pVIDVT~kS 365 (393)
.+|+- ....+|-|+.+++.|.+ |+..-|.+. + .. .+++..| .......|.. -.|||+++.+
T Consensus 93 ~~~~~~~~~~~vi~l~~~~e~~~~----Rl~~R~~~~-~--~~--~~~~~~q~~~~l~~~~~~~y~~---~~vi~~n~~~ 160 (184)
T 1y63_A 93 SELFPERWFHMVVVLHTSTEVLFE----RLTKRQYSE-A--KR--AENMEAEIQCICEEEARDAYED---DIVLVRENDT 160 (184)
T ss_dssp CTTSCGGGCSEEEEEECCHHHHHH----HHHHTTCCH-H--HH--HHHHHHHHTTHHHHHHHHHSCG---GGEEEEECSS
T ss_pred HhhhhhccCCEEEEEECCHHHHHH----HHHhCCCCh-h--hh--HhhHHHHHHHHHHHHHHHHhcc---CcEEECCCCC
Confidence 11221 13478889999887654 553222210 0 00 1222222 1222334432 3589999999
Q ss_pred HHHH---HHHHHHHHhhcc
Q 016228 366 IEET---AAVVLRLYHDRK 381 (393)
Q Consensus 366 IEEt---Aa~Il~~~~~r~ 381 (393)
+||+ +..|++.+...+
T Consensus 161 ~~~~~~~v~~i~~~l~~~~ 179 (184)
T 1y63_A 161 LEQMAATVEEIRERVEVLK 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999 777777775443
No 27
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.37 E-value=0.051 Score=46.39 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVAN 281 (393)
|+|.|.++||||=++-+||+ .|+.+-+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 89999999999999999995 5887754
No 28
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.30 E-value=0.015 Score=49.61 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=68.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCc----------------------------------ccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPK----------------------------------SLF 295 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp----~v~lP~----------------------------------~L~ 295 (393)
|+|+|.++||||=++-.||. .|+.+-+.=.+- +.+++. .++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~~v~ 84 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVT 84 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCcEEc
Confidence 89999999999999999995 587654321110 111100 000
Q ss_pred c------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHH-HHHHHHhhhCCCCcEEeCCCccH
Q 016228 296 Q------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREEL-EFAGRIFAQNPVWPVIEVTGKAI 366 (393)
Q Consensus 296 ~------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA--s~e~I~~EL-~~A~~lf~k~~g~pVIDVT~kSI 366 (393)
+ .....+|-|+.+++.+ .+|+..-+- ...+. +.+...+++ ......|.+. ..-+||+++.++
T Consensus 85 ~~~~~~~l~~~~vV~L~~~~e~~----~~Rl~~r~~----r~~~~~~~~~~~i~~~~~~r~~~~~~~-~~~~Idt~~~s~ 155 (184)
T 2iyv_A 85 SPGVRAALAGHTVVYLEISAAEG----VRRTGGNTV----RPLLAGPDRAEKYRALMAKRAPLYRRV-ATMRVDTNRRNP 155 (184)
T ss_dssp SHHHHHHHTTSCEEEEECCHHHH----HHHTTCCCC----CSSTTSCCHHHHHHHHHHHHHHHHHHH-CSEEEECSSSCH
T ss_pred CHHHHHHHcCCeEEEEeCCHHHH----HHHHhCCCC----CCCccCCCHHHHHHHHHHHHHHHHhcc-CCEEEECCCCCH
Confidence 0 0024677788887654 456532210 01122 223333333 2234556664 578999999999
Q ss_pred HHHHHHHHHHHhhc
Q 016228 367 EETAAVVLRLYHDR 380 (393)
Q Consensus 367 EEtAa~Il~~~~~r 380 (393)
||++..|++.+..+
T Consensus 156 ee~~~~I~~~l~~~ 169 (184)
T 2iyv_A 156 GAVVRHILSRLQVP 169 (184)
T ss_dssp HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887543
No 29
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.25 E-value=0.23 Score=42.89 Aligned_cols=74 Identities=8% Similarity=0.102 Sum_probs=42.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH----H---HHhhhCCCCcEEeCCCccHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA----G---RIFAQNPVWPVIEVTGKAIEETAA 371 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A----~---~lf~k~~g~pVIDVT~kSIEEtAa 371 (393)
+..+|-|+.+++.+.+-...|-..-|.. -.+.+.+++-+... . +.|+..-.+-+||.+ .++||+..
T Consensus 121 ~~~~i~l~~~~e~~~~Rl~~R~~~~~~~------~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~-~~~e~v~~ 193 (203)
T 1ukz_A 121 SKFILFFDCPEDIMLERLLERGKTSGRS------DDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD-RSVEDVYK 193 (203)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHCCT------TCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECS-SCHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHhccccCCCC------CCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECC-CCHHHHHH
Confidence 4678999999987765434443222221 12345544433221 1 123332123457876 99999999
Q ss_pred HHHHHHhh
Q 016228 372 VVLRLYHD 379 (393)
Q Consensus 372 ~Il~~~~~ 379 (393)
.|.+.+..
T Consensus 194 ~i~~~l~~ 201 (203)
T 1ukz_A 194 DVQDAIRD 201 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998864
No 30
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.21 E-value=0.16 Score=42.81 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
|+|.|.++||||=++-.|| ..|+.+.
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 8899999999999999999 5688765
No 31
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.20 E-value=0.052 Score=47.71 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
|+|.|.++||||=++-.||..|+.+.+
T Consensus 7 I~i~G~~GSGKST~~~~L~~lg~~~id 33 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFADLGINVID 33 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHcCCEEEE
Confidence 889999999999999999998887654
No 32
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.17 E-value=0.11 Score=44.09 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|+|+|.++||||=++-.|| ..|+.+-+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 8999999999999999999 56887755
No 33
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.10 E-value=0.075 Score=44.39 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=65.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeecccc----CCCCC--------------------------------------C
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV----MGVEL--------------------------------------P 291 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLV----p~v~l--------------------------------------P 291 (393)
|+|.|.++||||=++-.||+ .|+.+-+.--+ .+.++ .
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~g~~~~~~ 84 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATGGGMVLL 84 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECCTTGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhhcCCeEEECCCcEEeC
Confidence 89999999999999999995 58766432100 01000 0
Q ss_pred cccccc--CCCcEEEEecChhHHHHHHHHHHh--hcCCCCCCCCCCCCHHHHHHHHH----HHHHHhhhCCCCcEEeCCC
Q 016228 292 KSLFQV--DPEKVFGLTINPLVLQSIRKARAR--SLGFRDEIRSNYSEMDYVREELE----FAGRIFAQNPVWPVIEVTG 363 (393)
Q Consensus 292 ~~L~~i--~~~KI~GLTIdP~rL~~IR~eRl~--~lGl~~~~~S~YAs~e~I~~EL~----~A~~lf~k~~g~pVIDVT~ 363 (393)
+...+. ....+|-|+.+++.+.+ |+. .-+-. ...+. .+...+++. .....|.+ ..-+||+++
T Consensus 85 ~~~~~~l~~~~~~i~l~~~~e~~~~----R~~~~~r~~~---r~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~ 154 (173)
T 1e6c_A 85 EQNRQFMRAHGTVVYLFAPAEELAL----RLQASLQAHQ---RPTLT-GRPIAEEMEAVLREREALYQD--VAHYVVDAT 154 (173)
T ss_dssp HHHHHHHHHHSEEEEEECCHHHHHH----HHHHHHCSCC---CCCTT-HHHHHHHHHHHHHHHHHHHHH--HCSEEEETT
T ss_pred HHHHHHHHcCCeEEEEECCHHHHHH----HHhhccCCCC---CCcCC-CCCHHHHHHHHHHHHHHHHHh--CcEEEECCC
Confidence 000000 12467888888876553 332 11100 11122 122222222 22233444 256999999
Q ss_pred ccHHHHHHHHHHHHhh
Q 016228 364 KAIEETAAVVLRLYHD 379 (393)
Q Consensus 364 kSIEEtAa~Il~~~~~ 379 (393)
.++||++..|++.+..
T Consensus 155 ~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 155 QPPAAIVCELMQTMRL 170 (173)
T ss_dssp SCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999998854
No 34
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.00 E-value=0.12 Score=44.89 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
|.|+|.++||||=++-.||..|+.+-
T Consensus 5 i~l~G~~GsGKST~~~~La~lg~~~i 30 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDLGVPLV 30 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCccc
Confidence 78999999999999999999887653
No 35
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.96 E-value=0.12 Score=45.13 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|.|.++||||=++-+|| .+|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 7999999999999999998 578766543
No 36
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.85 E-value=0.085 Score=45.54 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=39.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh-C-CCCcEEeCCCccHHHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-N-PVWPVIEVTGKAIEETAAVVLRL 376 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k-~-~g~pVIDVT~kSIEEtAa~Il~~ 376 (393)
+..+|-|+.+++.+.+ |+. -+ ...|.+ +...+.+..+..-+.+ . ..|-+|| ++.++||++..|++.
T Consensus 130 ~d~vi~l~~~~e~~~~----Rl~-r~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Id-~~~~~e~~~~~i~~~ 197 (215)
T 1nn5_A 130 PDLVLFLQLQLADAAK----RGA-FG-----HERYEN-GAFQERALRCFHQLMKDTTLNWKMVD-ASKSIEAVHEDIRVL 197 (215)
T ss_dssp CSEEEEEECCHHHHHH----C-----------CTTCS-HHHHHHHHHHHHHHTTCTTSCEEEEE-TTSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHH----Hhc-cC-----ccccch-HHHHHHHHHHHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHH
Confidence 4568888888875543 331 01 012333 2333334333222222 1 1367899 478999999999998
Q ss_pred Hhhc
Q 016228 377 YHDR 380 (393)
Q Consensus 377 ~~~r 380 (393)
+...
T Consensus 198 l~~~ 201 (215)
T 1nn5_A 198 SEDA 201 (215)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 37
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.83 E-value=0.21 Score=41.99 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+|.|+++||||=++-.||+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999983
No 38
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.83 E-value=0.034 Score=48.62 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.6
Q ss_pred CCcEEeCCC-ccHHHHHHHHHHHHhhc
Q 016228 355 VWPVIEVTG-KAIEETAAVVLRLYHDR 380 (393)
Q Consensus 355 g~pVIDVT~-kSIEEtAa~Il~~~~~r 380 (393)
..-+||+++ +++||+++.|++.+..+
T Consensus 169 ~~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 169 CEISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp CSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 356999999 89999999999999654
No 39
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.78 E-value=0.08 Score=45.81 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
|+|+|.++||||=++-+||..|+++.+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~~g~~~i~ 30 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRELGAYVLD 30 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCcCHHHHHHHHHHCCCEEEE
Confidence 789999999999999999988877643
No 40
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.58 E-value=0.1 Score=45.69 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|.|.++||||=++-+|| .+|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 8999999999999999998 578766544
No 41
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.57 E-value=0.15 Score=45.15 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|+|.++||||=++-.|| ..|+.+...
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 8999999999999999999 468877653
No 42
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.47 E-value=0.24 Score=46.09 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=43.4
Q ss_pred EEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhC--------CCCcEEeCCCccHHHHHHHHH
Q 016228 303 FGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQN--------PVWPVIEVTGKAIEETAAVVL 374 (393)
Q Consensus 303 ~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~--------~g~pVIDVT~kSIEEtAa~Il 374 (393)
|=||-+++.=.+-|-.++..-|. -.+.+.+.+++..-.+.=... -+.-+||+|+.+|||+...|+
T Consensus 150 ifl~A~~e~Ra~Rr~~~l~~~~~-------~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~ 222 (233)
T 3r20_A 150 IFLTASAEERARRRNAQNVANGL-------PDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLL 222 (233)
T ss_dssp EEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHH
Confidence 45777776544433333433343 147778877776654432221 012689999999999999999
Q ss_pred HHHhhc
Q 016228 375 RLYHDR 380 (393)
Q Consensus 375 ~~~~~r 380 (393)
+++..+
T Consensus 223 ~~i~~~ 228 (233)
T 3r20_A 223 DLVTAQ 228 (233)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 998654
No 43
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.46 E-value=0.2 Score=42.31 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=40.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHhhh-CCCCcEEeCCCccHHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFAQ-NPVWPVIEVTGKAIEETAAVVLR 375 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-~~lf~k-~~g~pVIDVT~kSIEEtAa~Il~ 375 (393)
.+..+|-|+.+++.+. +|+..-+ .+. .+...+.+... ++.... . .|-+||. +.++||++..|.+
T Consensus 122 ~~d~vi~l~~~~e~~~----~Rl~~r~-------~~~-~~~~~~~~~~~~~~~~~~~~-~~~~Id~-~~~~~~~~~~i~~ 187 (195)
T 2pbr_A 122 KPDITLLLDIPVDIAL----RRLKEKN-------RFE-NKEFLEKVRKGFLELAKEEE-NVVVIDA-SGEEEEVFKEILR 187 (195)
T ss_dssp CCSEEEEEECCHHHHH----HHHHTTT-------CCC-CHHHHHHHHHHHHHHHHHST-TEEEEET-TSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHH----HHhhccC-------ccc-hHHHHHHHHHHHHHHHhhCC-CEEEEEC-CCCHHHHHHHHHH
Confidence 3567889999987654 4443101 122 22333333221 112211 2 4788997 6899999999999
Q ss_pred HHhh
Q 016228 376 LYHD 379 (393)
Q Consensus 376 ~~~~ 379 (393)
.+..
T Consensus 188 ~l~~ 191 (195)
T 2pbr_A 188 ALSG 191 (195)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8864
No 44
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.40 E-value=0.14 Score=46.69 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
|+|.|.+++|||=+|-.|| .+|+.+-
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 9999999999999999999 4687654
No 45
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.93 E-value=0.58 Score=40.62 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEEccCCCCCChhhHHhhhc--Ccee
Q 016228 255 IILSGVSRTGKTPLSIYLAQK--GYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~--G~KV 279 (393)
|.|+|.|++|||=++-.|+.+ |+.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 679999999999999999964 6544
No 46
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.88 E-value=0.37 Score=44.99 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
|+|.|.++||||=++-+||..|+.+.+
T Consensus 78 I~I~G~~GSGKSTva~~La~lg~~~id 104 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKNLGAYIID 104 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCcEEe
Confidence 899999999999999999988987754
No 47
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.69 E-value=0.19 Score=44.29 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|+|+|+++||||=++-.|| ..|+..-+
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 8999999999999999999 55765544
No 48
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.56 E-value=0.54 Score=40.20 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|+|+|+|++|||=|+-.|+..
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 789999999999999999843
No 49
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.92 E-value=0.36 Score=43.87 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=41.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHHH-HHHHhhhCC-CCcEEeCCCccHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELEF-AGRIFAQNP-VWPVIEVTGKAIEETAAVVL 374 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~~-A~~lf~k~~-g~pVIDVT~kSIEEtAa~Il 374 (393)
.+..+|=|+++|+.+.+--..| |-. ...|-+ .....+.+.. -+++..+.. .|-+||. ++++||+...|+
T Consensus 148 ~pd~vi~L~~~~e~~~~R~~~R----~~~---~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa-~~s~eev~~~I~ 219 (229)
T 4eaq_A 148 YPDLTIYLNVSAEVGRERIIKN----SRD---QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTY 219 (229)
T ss_dssp CCSEEEEEECCHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEET-TSCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CCC---ccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeC-CCCHHHHHHHHH
Confidence 3566888999998775522223 211 122321 1222233322 223333221 3778996 589999999999
Q ss_pred HHHhhc
Q 016228 375 RLYHDR 380 (393)
Q Consensus 375 ~~~~~r 380 (393)
+.+...
T Consensus 220 ~~l~~~ 225 (229)
T 4eaq_A 220 QTIIKY 225 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 50
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=92.10 E-value=0.055 Score=52.52 Aligned_cols=27 Identities=41% Similarity=0.653 Sum_probs=22.4
Q ss_pred CcEEEEc---cCCCCCChhhHHhhh--cCcee
Q 016228 253 ADIILSG---VSRTGKTPLSIYLAQ--KGYKV 279 (393)
Q Consensus 253 ADIVLvG---VSRTsKTPlSmYLA~--~G~KV 279 (393)
.=||.|| |=+|||||+++|||+ +++++
T Consensus 36 vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~ 67 (315)
T 4ehx_A 36 VPVISVGNLSVGGSGKTSFVMYLADLLKDKRV 67 (315)
T ss_dssp SCEEEEEESBSSCCSHHHHHHHHHHHTTTSCE
T ss_pred CCEEEECCEEeCCCChHHHHHHHHHHHhhcCc
Confidence 4589999 999999999999995 45544
No 51
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.76 E-value=0.46 Score=43.54 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.5
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVA 280 (393)
|+|.|.++||||=++-.||. .|+.+.
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999995 688766
No 52
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.49 E-value=0.49 Score=42.98 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=48.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcC--C-CCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLG--F-RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVL 374 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lG--l-~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il 374 (393)
..+|++=|+||++-+.++|+.-...+- + +..-+..-.+.+++.+.++.++.-|.....+-|+|- .+|++.+.+.
T Consensus 108 ~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~~~~e~~~~i~~r~~~~~~~~~~~fd~vivNd---~l~~a~~~l~ 184 (197)
T 3ney_A 108 KQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNN---GVDETLKKLQ 184 (197)
T ss_dssp HTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBSSCCHHHHHHHHHHHHHHHHHGGGCSEEEEES---CHHHHHHHHH
T ss_pred hcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCccccchHHHHHHHHHHHHHHhhccCCCEEEECC---CHHHHHHHHH
Confidence 468899999999999988753221110 0 110111112356777777766643443345566654 5999999999
Q ss_pred HHHhhc
Q 016228 375 RLYHDR 380 (393)
Q Consensus 375 ~~~~~r 380 (393)
.++...
T Consensus 185 ~ii~~~ 190 (197)
T 3ney_A 185 EAFDQA 190 (197)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 988553
No 53
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.76 E-value=0.83 Score=40.62 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHH---HHHHHHHHHHHHhhhCC-CCcEEeCCCccHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMD---YVREELEFAGRIFAQNP-VWPVIEVTGKAIEETAAVVL 374 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e---~I~~EL~~A~~lf~k~~-g~pVIDVT~kSIEEtAa~Il 374 (393)
|+.+|=|+++|+...+ |.. ....|-+.+ +|++ .-.++.++++ .|-+||- +++|||++..|+
T Consensus 122 PDl~i~Ld~~~e~~~~----R~~-------~~dr~e~~ef~~rv~~---~y~~la~~~~~~~~~IDa-~~~~eeV~~~I~ 186 (197)
T 3hjn_A 122 PDLTFYIDVDVETALK----RKG-------ELNRFEKREFLERVRE---GYLVLAREHPERIVVLDG-KRSIEEIHRDVV 186 (197)
T ss_dssp CSEEEEEECCHHHHHH----HC----------CTTCCHHHHHHHHH---HHHHHHHHCTTTEEEEET-TSCHHHHHHHHH
T ss_pred CCceeecCcChHHHHH----hCc-------CcCccccHHHHHHHHH---HHHHHHHhCCCCEEEEcC-CCCHHHHHHHHH
Confidence 5668889999998765 321 112455543 2322 2234555542 3788995 589999999999
Q ss_pred HHHhhc
Q 016228 375 RLYHDR 380 (393)
Q Consensus 375 ~~~~~r 380 (393)
+.+.++
T Consensus 187 ~~i~~r 192 (197)
T 3hjn_A 187 REVKRR 192 (197)
T ss_dssp HHHSCC
T ss_pred HHHHHH
Confidence 999764
No 54
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.22 E-value=2.8 Score=37.49 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=65.2
Q ss_pred EEEEccCCCCCChhhHHhhh-c--CceeeeccccCCCCCCcc--------------------------------------
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-K--GYKVANVPIVMGVELPKS-------------------------------------- 293 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~--G~KVANvPLVp~v~lP~~-------------------------------------- 293 (393)
|||+|+|++|||-|+=.|.. . ++.. -++-+-.-+=|-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~-svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGF-SVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEE-CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEE-EEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 89999999999999999873 2 2322 2333211111110
Q ss_pred --cc-ccCCCcEEEEecChhHHHHHHH--------------------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 016228 294 --LF-QVDPEKVFGLTINPLVLQSIRK--------------------ARARSLGFRDEIRSNYSEMDYVREELEFAGRIF 350 (393)
Q Consensus 294 --L~-~i~~~KI~GLTIdP~rL~~IR~--------------------eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf 350 (393)
+. ....++.+=|+||++-+.+||+ +||+.-|. -+.+.|+.=|..|+.=+
T Consensus 83 ~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~--------e~~e~i~~Rl~~a~~e~ 154 (186)
T 1ex7_A 83 ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT--------ETEESINKRLSAAQAEL 154 (186)
T ss_dssp HHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC--------SCHHHHHHHHHHHHHHH
T ss_pred ceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHH
Confidence 00 0123567777788777776653 34444443 24566777677666544
Q ss_pred hhC----CCCcEEeCCCccHHHHHHHHHHHHh
Q 016228 351 AQN----PVWPVIEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 351 ~k~----~g~pVIDVT~kSIEEtAa~Il~~~~ 378 (393)
... ...-|+ |-.+|++...|.+++.
T Consensus 155 ~~~~~~~fD~vIv---Nddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 155 AYAETGAHDKVIV---NDDLDKAYKELKDFIF 183 (186)
T ss_dssp HHHTTTCSSEEEE---CSSHHHHHHHHHHHHT
T ss_pred hhccccCCcEEEE---CcCHHHHHHHHHHHHH
Confidence 321 122334 3469999999998874
No 55
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.14 E-value=1.2 Score=44.02 Aligned_cols=125 Identities=19% Similarity=0.322 Sum_probs=74.0
Q ss_pred HHHHHHHHhhCC-CEEEEEcCC---------HHHHHHHHHHHHHcCCCEeecc-h-----------HHHHHHHHHhC---
Q 016228 153 LMVIIKQAAKDG-AMLVYTLAD---------PSMAESAKKACELWGIPSTDVL-G-----------PITEAIASHLG--- 207 (393)
Q Consensus 153 l~~ii~~a~~~~-~iV~~Tlvd---------~eLr~~l~~~~~~~gi~~vDll-~-----------p~i~~Le~~lG--- 207 (393)
+.++|+.+++.| .+++.|=-. ..+++.+....+..|++ +|++ . -++..+.+.+|
T Consensus 92 v~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~-fd~i~~~~~~~~~KP~p~~~~~a~~~l~~~~ 170 (416)
T 3zvl_A 92 IPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVP-FQVLVATHAGLNRKPVSGMWDHLQEQANEGI 170 (416)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSC-CEEEEECSSSTTSTTSSHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 567777777777 566666522 45566678888888886 4543 1 23445555666
Q ss_pred -CCCCCCC--CCCC--------------------------CCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCc------
Q 016228 208 -VSPSGLP--RGAP--------------------------GRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQK------ 252 (393)
Q Consensus 208 -~~P~~~~--~~~p--------------------------G~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~e------ 252 (393)
+.|.... +-.. |+....-++||---.+.+|.+. +-+|..+..
T Consensus 171 ~v~~~~~l~VGDs~gr~~~~~~~~~~~d~s~~Di~~A~~aGi~f~~pe~~f~~~~~~~~~~~---~f~p~~~~~~~~~~~ 247 (416)
T 3zvl_A 171 PISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELP---AFDPRTISSAGPLYL 247 (416)
T ss_dssp CCCGGGCEEECSCSCBCTTSSTTCCSCCSCCHHHHHHHHHTCCEECHHHHHSCCCCCCBCCC---SCCGGGCCSCSCSSB
T ss_pred CCCHHHeEEEECCCCCcccccccccccCCChhhHHHHHHcCCcccCcHHhhCCCCcCccccC---CCChhhhcccccccC
Confidence 7663210 0111 2222333778877776666642 222222221
Q ss_pred -----------CcEEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 253 -----------ADIILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 253 -----------ADIVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
-=|||+|+|+||||=++--|+ ..||.+.+
T Consensus 248 p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 248 PESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp STTSCSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCccccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 117889999999999999998 45654433
No 56
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.81 E-value=0.39 Score=41.42 Aligned_cols=19 Identities=47% Similarity=0.551 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
++|+|+|++|||=|.=.|+
T Consensus 4 i~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEESSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999988887
No 57
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.24 E-value=1.2 Score=40.15 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~K 278 (393)
|.|.|.++||||=+|-+||. .|+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhh
Confidence 88999999999999999996 6865
No 58
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.07 E-value=2 Score=38.68 Aligned_cols=120 Identities=21% Similarity=0.338 Sum_probs=70.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec------------c-------------ccCC-------------------CC
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV------------P-------------IVMG-------------------VE 289 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv------------P-------------LVp~-------------------v~ 289 (393)
|||+|..++||+-.|-.|| .+|+..-.. + |||+ -.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilDG 82 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFDG 82 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEecC
Confidence 7999999999999999999 567653321 0 1220 01
Q ss_pred CCccccc------------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCC------------------CCHHHH
Q 016228 290 LPKSLFQ------------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNY------------------SEMDYV 339 (393)
Q Consensus 290 lP~~L~~------------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~Y------------------As~e~I 339 (393)
.|..+-+ .....++=|.++.+.|.+ |+..-......+..| -+.|.|
T Consensus 83 fPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~----Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i 158 (206)
T 3sr0_A 83 FPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE----RLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI 158 (206)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHH----HHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred CchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHH----HHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence 2332211 245678999999988876 332221111111111 123444
Q ss_pred HHHHH-------HHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 340 REELE-------FAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 340 ~~EL~-------~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
+.-|+ -..+.|++.-.+..||.+ .++||+.+.|++.+.+
T Consensus 159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~-~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 159 KKRLEVYREQTAPLIEYYKKKGILRIIDAS-KPVEEVYRQVLEVIGD 204 (206)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETT-SCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHcc
Confidence 44333 233456664235678865 5999999999999864
No 59
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.78 E-value=0.36 Score=44.83 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
|+|+|.|++|||=|++-||++|+.+.|
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~~iIs 63 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGHRLIA 63 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCeEEe
Confidence 899999999999999999999976555
No 60
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.35 E-value=0.31 Score=41.56 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
|.|+|.++||||=++-.||.+|+.+-
T Consensus 11 I~i~G~~GsGKST~~~~La~~g~~~i 36 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSWGYPVL 36 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEE
Confidence 88999999999999999997787664
No 61
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.30 E-value=1.5 Score=38.91 Aligned_cols=72 Identities=6% Similarity=0.016 Sum_probs=45.5
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhC----C-----CCcEEeCCCccHHHHH
Q 016228 301 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF-AQN----P-----VWPVIEVTGKAIEETA 370 (393)
Q Consensus 301 KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf-~k~----~-----g~pVIDVT~kSIEEtA 370 (393)
..|=|+.+++.+.+-+.+|. |+ .+.+...--.+++..++-| +.. + ---+||+++.++||++
T Consensus 119 ~~V~L~A~~e~r~~R~~~~~---~~------~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv 189 (201)
T 3fdi_A 119 ISAFILGDKDTKTKRVMERE---GV------DEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTAT 189 (201)
T ss_dssp EEEEEEECHHHHHHHHHHHH---TC------CHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHh---CC------CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHH
Confidence 47889999998877555442 22 1222223233334555443 321 0 1358999999999999
Q ss_pred HHHHHHHhhcc
Q 016228 371 AVVLRLYHDRK 381 (393)
Q Consensus 371 a~Il~~~~~r~ 381 (393)
..|++++..+.
T Consensus 190 ~~I~~~i~~~~ 200 (201)
T 3fdi_A 190 DMIIKYIDSRD 200 (201)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhc
Confidence 99999997653
No 62
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.80 E-value=0.33 Score=41.56 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQK--GYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~--G~KVA 280 (393)
|+|.|.++||||=++-.||++ |+++.
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~ 34 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIK 34 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence 899999999999999999965 77654
No 63
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.71 E-value=0.75 Score=42.08 Aligned_cols=73 Identities=16% Similarity=0.293 Sum_probs=45.1
Q ss_pred CCCcEEEE-ecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHhhh----C-CCCcEEeCCCccHHHHH
Q 016228 298 DPEKVFGL-TINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE-FAGRIFAQ----N-PVWPVIEVTGKAIEETA 370 (393)
Q Consensus 298 ~~~KI~GL-TIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~-~A~~lf~k----~-~g~pVIDVT~kSIEEtA 370 (393)
.|+.+|=| +++|+.+.+ |.. .+ ...|-..+ -.+-+. .-.+++++ . ..|-+||+.++++||++
T Consensus 125 ~PDlti~L~dv~pe~~~~----R~~-~~-----~dr~E~~~-f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~ 193 (216)
T 3tmk_A 125 KPDLTLFLSTQDVDNNAE----KSG-FG-----DERYETVK-FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVE 193 (216)
T ss_dssp CCSEEEEEECSCCSCGGG----CCS-SS-----CCTTCCHH-HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHH
T ss_pred CCCEEEEEeCCCHHHHHH----Hhc-cC-----cccccHHH-HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHH
Confidence 46678889 999998653 321 11 12454422 222222 12233332 1 26999999999999999
Q ss_pred HHHHHHHhhcc
Q 016228 371 AVVLRLYHDRK 381 (393)
Q Consensus 371 a~Il~~~~~r~ 381 (393)
+.|.+.+....
T Consensus 194 ~~I~~~i~~~l 204 (216)
T 3tmk_A 194 ALIWQIVEPVL 204 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 64
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.31 E-value=1.5 Score=44.38 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=48.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee---------ccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcC
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN---------VPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLG 324 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN---------vPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lG 324 (393)
|+|+|+|++|||=|+..|| ..|..+-| +++.-.-+-|.+.-.++.+ .+ +
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hh-li--------------------d 63 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHH-VM--------------------N 63 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEE-SC--------------------S
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhh-cC--------------------C
Confidence 7899999999999999999 55655544 2333333344444322221 11 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE
Q 016228 325 FRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI 359 (393)
Q Consensus 325 l~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVI 359 (393)
.-+ ....|+.-+-++.-....++++.+. ..||+
T Consensus 64 ~~~-~~~~~s~~~F~~~a~~~i~~i~~~g-~~pil 96 (409)
T 3eph_A 64 HVD-WSEEYYSHRFETECMNAIEDIHRRG-KIPIV 96 (409)
T ss_dssp CBC-TTSCCCHHHHHHHHHHHHHHHHTTT-CEEEE
T ss_pred ccC-hHhHhhHHHHHHHHHHHHHHHHhcC-CCEEE
Confidence 111 2345666666666666667777775 56655
No 65
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.97 E-value=0.48 Score=40.01 Aligned_cols=27 Identities=41% Similarity=0.456 Sum_probs=23.2
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVAN 281 (393)
|+|.|+++||||=++-.||. .|+.+-+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 89999999999999999994 6876543
No 66
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.70 E-value=0.52 Score=41.89 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.3
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp 286 (393)
|+++|.|++|||-+..-|+ .+|+||+-+-.-+
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 7899999999999988777 4699998666444
No 67
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.31 E-value=0.55 Score=38.96 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=65.6
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCC---------------------------------------C
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVE---------------------------------------L 290 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp----~v~---------------------------------------l 290 (393)
|+|.|.++||||=++-+||+ .|+.+-+.=-+. +.. +
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~~~ 82 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGLGA 82 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCEeC
Confidence 89999999999999999996 688765410000 000 0
Q ss_pred C-cccccc-CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHH
Q 016228 291 P-KSLFQV-DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEE 368 (393)
Q Consensus 291 P-~~L~~i-~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEE 368 (393)
. ..+... ....+|-|+.+++.+. +|+..-+ .. +... ...+++++-+......|.+ .. -+| .++.++||
T Consensus 83 ~~~~~~~l~~~~~~i~l~~~~e~~~----~R~~~r~-~r-~~~~-~~~~~i~~~~~~~~~~~~~-~~-~~i-~~~~~~~~ 152 (168)
T 2pt5_A 83 NEEALNFMKSRGTTVFIDIPFEVFL----ERCKDSK-ER-PLLK-RPLDEIKNLFEERRKIYSK-AD-IKV-KGEKPPEE 152 (168)
T ss_dssp CHHHHHHHHTTSEEEEEECCHHHHH----HHCBCTT-CC-BGGG-SCGGGTHHHHHHHHHHHTT-SS-EEE-ECSSCHHH
T ss_pred CHHHHHHHHcCCEEEEEECCHHHHH----HHHhCCC-CC-CCCc-chHHHHHHHHHHHHHHHHh-CC-EEE-CCCCCHHH
Confidence 0 000000 1346777888876543 4542111 00 1100 1134444444333344554 23 466 66799999
Q ss_pred HHHHHHHHHhhcc
Q 016228 369 TAAVVLRLYHDRK 381 (393)
Q Consensus 369 tAa~Il~~~~~r~ 381 (393)
++..|++.+..+.
T Consensus 153 ~~~~i~~~l~~~~ 165 (168)
T 2pt5_A 153 VVKEILLSLEGNA 165 (168)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987643
No 68
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.25 E-value=0.52 Score=43.27 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|+|+++||||=++.-|| +.|+.+.|.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 7899999999999999999 567766543
No 69
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=82.18 E-value=7.7 Score=35.05 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CH---HHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EM---DYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA--s~---e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~ 372 (393)
.|+.+|=|+++|+.+.+-...| |- ...|- +. +++++.. .++.++...|-+||. ++++||+.+.
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R----~~----~dr~E~~~~~f~~rv~~~y---~~la~~~~~~~vIDa-~~s~eeV~~~ 199 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARAR----GE----LDRIEQESFDFFNRTRARY---LELAAQDKSIHTIDA-TQPLEAVMDA 199 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----SS----CCTTTTSCHHHHHHHHHHH---HHHHHTCTTEEEEET-TSCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CC----ccchhhhHHHHHHHHHHHH---HHHHHHCCcEEEECC-CCCHHHHHHH
Confidence 3567899999999887644445 21 11232 22 2333322 223333225899995 6899999999
Q ss_pred HHHHHhhccc
Q 016228 373 VLRLYHDRKH 382 (393)
Q Consensus 373 Il~~~~~r~~ 382 (393)
|.+.+.....
T Consensus 200 I~~~l~~~l~ 209 (213)
T 4tmk_A 200 IRTTVTHWVK 209 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 70
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.06 E-value=0.62 Score=39.00 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~K 278 (393)
|||.|.|+||||=++-.||+ .|+.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999994 4544
No 71
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.97 E-value=5.1 Score=37.00 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=44.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHH-HHHHHhhhCCCCcEEeCCCccHHHHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELE-FAGRIFAQNPVWPVIEVTGKAIEETAAVVLR 375 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~-~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~ 375 (393)
.++.+|=|+++|+.+.+--+.| |- ...|-. .....+.+. .-.+++++..+|-+||. ++++||+.+.|.+
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R----~~----~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa-~~sieeV~~~I~~ 224 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGR----GE----LDRIEKMDISFFERARERYLELANSDDSVVMIDA-AQSIEQVTADIRR 224 (236)
T ss_dssp CCSEEEEEECCHHHHHHC---------C----CCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEET-TSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CC----cchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeC-CCCHHHHHHHHHH
Confidence 3567899999998876632333 21 122332 122223332 22355555446899996 4899999999999
Q ss_pred HHhhcc
Q 016228 376 LYHDRK 381 (393)
Q Consensus 376 ~~~~r~ 381 (393)
.+...-
T Consensus 225 ~l~~~l 230 (236)
T 3lv8_A 225 ALQDWL 230 (236)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
No 72
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.83 E-value=0.59 Score=38.83 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ--KGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~--~G~KVAN 281 (393)
|+|.|+++||||=++-.||+ .|+.+-+
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 78999999999999999996 4655443
No 73
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=80.80 E-value=5.2 Score=36.52 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=46.9
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh-----------CCCCcEEeCCCccHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-----------NPVWPVIEVTGKAIEE 368 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k-----------~~g~pVIDVT~kSIEE 368 (393)
...|=|+.+++.+.+-+.+|. |+ .+.+..+--++++..++-|-+ . ---+||++..++||
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~---~~------~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~-~dl~IdT~~l~~ee 207 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVD---CI------DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKN-YDLPINTTKLTLEE 207 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHH---TC------CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGG-CSEEEECTTCCHHH
T ss_pred eEEEEEECCHHHHHHHHHHhc---CC------CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CeEEEECCCCCHHH
Confidence 357889999988777444442 32 123333434445555554332 2 23589999999999
Q ss_pred HHHHHHHHHhhc
Q 016228 369 TAAVVLRLYHDR 380 (393)
Q Consensus 369 tAa~Il~~~~~r 380 (393)
++..|++++..+
T Consensus 208 vv~~I~~~i~~~ 219 (223)
T 3hdt_A 208 TAELIKAYIRLK 219 (223)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999653
No 74
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.23 E-value=0.69 Score=45.69 Aligned_cols=27 Identities=44% Similarity=0.572 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|||+|+++||||=|++-|| ..|..+.|
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 8999999999999999999 56755544
No 75
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.44 E-value=0.77 Score=38.89 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQK----GYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~----G~KVA 280 (393)
|+|+|.++||||=++-.||.+ |+.+.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 789999999999999999964 87764
No 76
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=78.94 E-value=0.88 Score=40.22 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|+|.|.++||||=++-.|| ..|+.+-+
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 8999999999999999999 67887664
No 77
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=77.53 E-value=5.4 Score=35.66 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhCC-CCcEEeCCCccHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-----MDYVREELEFAGRIFAQNP-VWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs-----~e~I~~EL~~A~~lf~k~~-g~pVIDVT~kSIEEtAa~ 372 (393)
|+.+|=|+++|+...+--..| |-. ...|-. .++|++- -.+++++.. .|.+||. ++++||+.+.
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r----~~~---~dr~e~~~~~f~~~v~~~---Y~~l~~~~~~~~~~IDa-~~~~e~V~~~ 193 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKN----SRD---QNRLDQEDLKFHEKVIEG---YQEIIHNESQRFKSVNA-DQPLENVVED 193 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC--------------CCHHHHHHHHHHHHH---HHHHHHSCCTTEEEEET-TSCHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhc----CCc---ccchhccCHHHHHHHHHH---HHHHHHhCCCCEEEEEC-CCCHHHHHHH
Confidence 567899999999876522222 111 112211 1222221 123444432 4899995 5899999999
Q ss_pred HHHHHhhc
Q 016228 373 VLRLYHDR 380 (393)
Q Consensus 373 Il~~~~~r 380 (393)
|++.+.+.
T Consensus 194 i~~~i~~~ 201 (205)
T 4hlc_A 194 TYQTIIKY 201 (205)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 78
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.37 E-value=0.97 Score=44.21 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|+|+|+++||||=++..|| +.|+.+.|.
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 8999999999999999999 567666664
No 79
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=77.14 E-value=0.93 Score=39.69 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=25.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANv 282 (393)
|+|.|.++||||=++-.||+ .|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 89999999999999999994 79888765
No 80
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.12 E-value=1 Score=39.57 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANv 282 (393)
|+|+|.++||||=++-.||+ .|+.+-+.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 89999999999999999994 68877653
No 81
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.13 E-value=1.1 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCc
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~ 277 (393)
|||+|+|++|||-|++.|| ..|.
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEECCCcCCHHHHHHHHHHhCcc
Confidence 7899999999999999999 4553
No 82
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=75.70 E-value=3.4 Score=34.24 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCCC-EEEEEcCC---------HHHHHHHHHHHHHcCCCEeecch
Q 016228 150 VEQLMVIIKQAAKDGA-MLVYTLAD---------PSMAESAKKACELWGIPSTDVLG 196 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~~-iV~~Tlvd---------~eLr~~l~~~~~~~gi~~vDll~ 196 (393)
.+.+.++++.+.+.++ +|+.++.. .++.+.+++.|+++|++++|++.
T Consensus 89 ~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 89 QTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 4456777777766664 55555422 37889999999999999999864
No 83
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=75.60 E-value=1.2 Score=39.66 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANv 282 (393)
|+|.|.++||||=++-.||+ .|+.+.+.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 79999999999999999994 69887765
No 84
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=75.55 E-value=4.8 Score=35.84 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhCCC-EEEEEcCC-------------HHHHHHHHHHHHHcCCCEeecchHHHHHHH
Q 016228 150 VEQLMVIIKQAAKDGA-MLVYTLAD-------------PSMAESAKKACELWGIPSTDVLGPITEAIA 203 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~~-iV~~Tlvd-------------~eLr~~l~~~~~~~gi~~vDll~p~i~~Le 203 (393)
.+.++++|+++++.++ +|+.|..- .++.+.+++.|+++|+++||+...+.+.++
T Consensus 111 ~~~l~~~i~~~~~~g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~iD~~~~~~~~~~ 178 (233)
T 1k7c_A 111 PAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYVDHWSYVDSIYE 178 (233)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEEecHHHHHHHHH
Confidence 4567888888766663 45555431 146789999999999999999988876654
No 85
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=75.17 E-value=1.9 Score=40.53 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=32.1
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCcee
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKV 279 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~-~G~KV 279 (393)
.+++.+.+++.+--.-..-..--|+|.|.++||||=+.-.+|+ .|..+
T Consensus 31 ~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 31 KEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp HHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 4567777777642211122223599999999999999999994 45443
No 86
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=75.11 E-value=4.9 Score=33.60 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCC-CEEEEEcCC----------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016228 151 EQLMVIIKQAAKDG-AMLVYTLAD----------------PSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 151 e~l~~ii~~a~~~~-~iV~~Tlvd----------------~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
+.+.++++.+.+.+ .+|+.|+.- ..+.+.+++.|+++|++++|+...+
T Consensus 101 ~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~ 165 (204)
T 3p94_A 101 GNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYHSAM 165 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEchhhhh
Confidence 34566677776656 466666421 5677889999999999999987766
No 87
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=74.78 E-value=0.8 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~K 278 (393)
-++|.|.++||||=+.-.+|+ .|+.
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 489999999999999999995 4443
No 88
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=74.78 E-value=7.9 Score=34.84 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=42.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHH-HHHHHhhhCC-CCcEEeCCCccHHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELE-FAGRIFAQNP-VWPVIEVTGKAIEETAAVVLR 375 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~-~A~~lf~k~~-g~pVIDVT~kSIEEtAa~Il~ 375 (393)
|+.+|=|+++|+.+.+ |+..-|- ...|-. .....+.+. .-+++.++.. .|-+||.+ +++||+++.|++
T Consensus 132 PDlvi~Ld~~~e~~~~----Ri~~R~~----~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~-~s~eeV~~~I~~ 202 (213)
T 4edh_A 132 PDLTLVFDLPVEIGLA----RAAARGR----LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAG-LPLAEVQAGLDR 202 (213)
T ss_dssp CSEEEEEECCHHHHHH----HHCCCSS----CCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETT-SCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHH----HHHhcCC----cCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHHHHHH
Confidence 5678999999988865 4422221 112322 111222222 2223333321 48899964 799999999999
Q ss_pred HHhhc
Q 016228 376 LYHDR 380 (393)
Q Consensus 376 ~~~~r 380 (393)
.+...
T Consensus 203 ~l~~~ 207 (213)
T 4edh_A 203 LLPNL 207 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 89
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.45 E-value=1.3 Score=39.45 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceeee
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-GYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-G~KVAN 281 (393)
|.|.|.++||||=++-+||.+ |+.+-+
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 789999999999999999977 988766
No 90
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=74.26 E-value=1.3 Score=36.06 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|.|.++||||=+...+|+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999954
No 91
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.90 E-value=1.1 Score=39.30 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=44.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhc----CCCCC--------CCCCCCCHHHHHHHHHHHHHHhh--hCCCCcEEeCCC
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSL----GFRDE--------IRSNYSEMDYVREELEFAGRIFA--QNPVWPVIEVTG 363 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~l----Gl~~~--------~~S~YAs~e~I~~EL~~A~~lf~--k~~g~pVIDVT~ 363 (393)
..++.+=|+++++-...+++.-.... -.++. .... -+.+.+++-|+.+..-+. +...+-|+|
T Consensus 97 ~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~-~~~e~i~~Rl~~~~~e~~~~~~~d~vivN--- 172 (208)
T 3tau_A 97 AAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT-ESMEVVEERMETAKKEIEMMASYDYAVVN--- 172 (208)
T ss_dssp HTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC--------CCHHHHHHHHHHHHHHHHGGGSSEEEEC---
T ss_pred HcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhccCCEEEEC---
Confidence 35667778999988888765321100 00100 0011 244667777777764222 222333443
Q ss_pred ccHHHHHHHHHHHHhhcc
Q 016228 364 KAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 364 kSIEEtAa~Il~~~~~r~ 381 (393)
-.+|++...|.+++...+
T Consensus 173 ~~~~~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 173 DVVANAVQKIKGIVETEH 190 (208)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 259999999999997644
No 92
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.65 E-value=1.2 Score=37.87 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016228 255 IILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G 276 (393)
|+|+|.|++|||=++-.|+..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999999654
No 93
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.51 E-value=1.2 Score=38.16 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-HHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG-RIFAQNPVWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~-~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
+..+|-|+.+++.+. +|+.. + ...|.+ +.+.+.+..+. +...+. .+-+||.+ .++||++..|++.+
T Consensus 131 ~d~vi~l~~~~e~~~----~Rl~~-r-----~~r~~~-~~~~~~~~~~~~~~~~~~-~~~~Id~~-~~~~~~~~~i~~~l 197 (212)
T 2wwf_A 131 PDVVFYLNVPPNYAQ----NRSDY-G-----EEIYEK-VETQKKIYETYKHFAHED-YWINIDAT-RKIEDIHNDIVKEV 197 (212)
T ss_dssp CSEEEEEECCTTGGG----GSTTT-T-----SSTTCS-HHHHHHHHHHGGGGTTCT-TEEEEECS-SCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHH----Hhhcc-C-----cccccH-HHHHHHHHHHHHHHhccC-CEEEEECC-CCHHHHHHHHHHHH
Confidence 445777777776543 34321 1 112433 34444443222 222222 57899976 89999999999998
Q ss_pred hhc
Q 016228 378 HDR 380 (393)
Q Consensus 378 ~~r 380 (393)
...
T Consensus 198 ~~~ 200 (212)
T 2wwf_A 198 TKI 200 (212)
T ss_dssp TTS
T ss_pred HHh
Confidence 654
No 94
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=73.13 E-value=7.8 Score=33.15 Aligned_cols=52 Identities=4% Similarity=-0.011 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhCC-CEEEEEcCC-------------------------HHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016228 151 EQLMVIIKQAAKDG-AMLVYTLAD-------------------------PSMAESAKKACELWGIPSTDVLGPITEAI 202 (393)
Q Consensus 151 e~l~~ii~~a~~~~-~iV~~Tlvd-------------------------~eLr~~l~~~~~~~gi~~vDll~p~i~~L 202 (393)
+.+.++|+.+.+.+ .+|+.|... .++.+.+++.|++.|++++|+...+....
T Consensus 100 ~~l~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vD~~~~~~~~~ 177 (240)
T 3mil_A 100 DNIRQMVSLMKSYHIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFVALNKAFQQEG 177 (240)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHhCCeEEehHHHHhhcC
Confidence 45666777776666 466666511 26667888999999999999877766554
No 95
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=73.01 E-value=1.1 Score=38.95 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+|+|+|++|||=++-.|+.
T Consensus 15 i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 96
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=72.99 E-value=7 Score=33.81 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCC-EEEEEcC--C---------------HHHHHHHHHHHHHcCCCEeecchHHH
Q 016228 152 QLMVIIKQAAKDGA-MLVYTLA--D---------------PSMAESAKKACELWGIPSTDVLGPIT 199 (393)
Q Consensus 152 ~l~~ii~~a~~~~~-iV~~Tlv--d---------------~eLr~~l~~~~~~~gi~~vDll~p~i 199 (393)
.+..+++.++..++ +|+.|+. + .++.+.+++.|++.|+++||+..+++
T Consensus 106 ~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~~iD~~~~~~ 171 (209)
T 4hf7_A 106 NIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIPFVNYYQPMV 171 (209)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCCEECSHHHHE
T ss_pred HHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCeEeecHHHHh
Confidence 45666776666663 6666652 0 35677899999999999999987763
No 97
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=72.81 E-value=1.5 Score=43.05 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|||+|++++|||-|++-|| ..|..+.|
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis 40 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELIS 40 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEe
Confidence 7899999999999999999 45554444
No 98
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=72.81 E-value=8.9 Score=32.08 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhCCC-EEEEEcCC---------HHHHHHHHHHHHHcCCCEeecchH
Q 016228 151 EQLMVIIKQAAKDGA-MLVYTLAD---------PSMAESAKKACELWGIPSTDVLGP 197 (393)
Q Consensus 151 e~l~~ii~~a~~~~~-iV~~Tlvd---------~eLr~~l~~~~~~~gi~~vDll~p 197 (393)
+.+.++++.+.+.++ +|+.|+.. .++.+.+++.|+++|++++|++..
T Consensus 86 ~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~ 142 (190)
T 1ivn_A 86 QTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFME 142 (190)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCTHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccHHh
Confidence 456777777766564 55566421 567888999999999999999743
No 99
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=72.62 E-value=12 Score=36.44 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=76.4
Q ss_pred eecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhH
Q 016228 192 TDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSI 270 (393)
Q Consensus 192 vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eAD-IVLvGVSRTsKTPlSm 270 (393)
-|++...++.|++....... ...|+.-. |..++.+ + .||..-| +||.|.+++|||-+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~----~~~gi~TG-----~~~LD~~---~--------gGl~~G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 5 KEVLESAMDLITENQRKGSL----EVTGIPTG-----FVQLDNY---T--------SGFNKGSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTT----CCCSBCCS-----CHHHHHH---H--------CSBCTTCEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC----CcCcccCC-----ChHHHHH---h--------cCCCCCcEEEEEeCCCCCHHHHHH
Confidence 36778888888876541221 12333222 2222222 2 2455555 6678999999999999
Q ss_pred HhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhc--CCCCC--CCCCCCCHHHHHHHHHHH
Q 016228 271 YLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSL--GFRDE--IRSNYSEMDYVREELEFA 346 (393)
Q Consensus 271 YLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~l--Gl~~~--~~S~YAs~e~I~~EL~~A 346 (393)
-+|....+ .+ .+--+|.|..+++.|.. |+.+. |++.. ...... .+. ...|..|
T Consensus 65 ~ia~~~a~-~g----------------~~Vl~fSlEms~~ql~~----Rlls~~~~v~~~~l~~g~Ls-~~e-~~~l~~a 121 (338)
T 4a1f_A 65 NMVLSALN-DD----------------RGVAVFSLEMSAEQLAL----RALSDLTSINMHDLESGRLD-DDQ-WENLAKC 121 (338)
T ss_dssp HHHHHHHH-TT----------------CEEEEEESSSCHHHHHH----HHHHHHHCCCHHHHHHTCCC-HHH-HHHHHHH
T ss_pred HHHHHHHH-cC----------------CeEEEEeCCCCHHHHHH----HHHHHhhCCCHHHHhcCCCC-HHH-HHHHHHH
Confidence 99854221 00 00114777788877755 22111 11100 000111 111 1224445
Q ss_pred HHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 347 GRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 347 ~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
-..+.+. .+-+.|....+++|+.+.+-.+...
T Consensus 122 ~~~l~~~-~l~I~d~~~~si~~i~~~ir~l~~~ 153 (338)
T 4a1f_A 122 FDHLSQK-KLFFYDKSYVRIEQIRLQLRKLKSQ 153 (338)
T ss_dssp HHHHHHS-CEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CeEEeCCCCCcHHHHHHHHHHHHHh
Confidence 4555553 5667787788899888887765543
No 100
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=71.13 E-value=67 Score=32.00 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
||..-| +||.|.+++|||=+++-+|.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 566666 56679999999999999984
No 101
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=70.94 E-value=8.6 Score=32.10 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhCC-CEEEEEc--CC-----------HHHHHHHHHHHHHcCCCEeecchHHHHH
Q 016228 150 VEQLMVIIKQAAKDG-AMLVYTL--AD-----------PSMAESAKKACELWGIPSTDVLGPITEA 201 (393)
Q Consensus 150 ~e~l~~ii~~a~~~~-~iV~~Tl--vd-----------~eLr~~l~~~~~~~gi~~vDll~p~i~~ 201 (393)
.+.+.++++.+.+.+ .+|+.|. .. .++.+.+++.|+++|++++|+...+.+.
T Consensus 116 ~~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~~~~~~~ 181 (216)
T 3rjt_A 116 RDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRL 181 (216)
T ss_dssp HHHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcHHHHHHH
Confidence 345677777776556 4666651 11 2578889999999999999987776654
No 102
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=70.61 E-value=1.5 Score=35.93 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|.|.++||||=+...+|+.
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999854
No 103
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=70.60 E-value=15 Score=33.79 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=49.8
Q ss_pred ChH-HHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHH
Q 016228 106 GTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKAC 184 (393)
Q Consensus 106 sTG-eTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~ 184 (393)
..| .-|+.+++.+...+|++ ++..++. ++ +.+.+.+++.+. -+|+-+.-+.+.|..+.+.|
T Consensus 78 diG~~Ka~~~~~~l~~~np~~--------~v~~~~~-----~~-~~~~~~~~~~~~----DvVi~~~d~~~~r~~l~~~~ 139 (251)
T 1zud_1 78 DIDRPKSQVSQQRLTQLNPDI--------QLTALQQ-----RL-TGEALKDAVARA----DVVLDCTDNMATRQEINAAC 139 (251)
T ss_dssp GTTSBHHHHHHHHHHHHCTTS--------EEEEECS-----CC-CHHHHHHHHHHC----SEEEECCSSHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCC--------EEEEEec-----cC-CHHHHHHHHhcC----CEEEECCCCHHHHHHHHHHH
Confidence 345 35777777777777763 2333332 02 456666666543 38888888999999999999
Q ss_pred HHcCCCEeec
Q 016228 185 ELWGIPSTDV 194 (393)
Q Consensus 185 ~~~gi~~vDl 194 (393)
.+.++|+|+.
T Consensus 140 ~~~~~p~i~~ 149 (251)
T 1zud_1 140 VALNTPLITA 149 (251)
T ss_dssp HHTTCCEEEE
T ss_pred HHhCCCEEEE
Confidence 9999999985
No 104
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=70.33 E-value=8.3 Score=33.36 Aligned_cols=47 Identities=11% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhC--C-CEEEEEcCC--------------------HHHHHHHHHHHHHcCCCEeecchH
Q 016228 151 EQLMVIIKQAAKD--G-AMLVYTLAD--------------------PSMAESAKKACELWGIPSTDVLGP 197 (393)
Q Consensus 151 e~l~~ii~~a~~~--~-~iV~~Tlvd--------------------~eLr~~l~~~~~~~gi~~vDll~p 197 (393)
..+.++|+.+.+. + .+|+.|... .++.+.+++.|+++|++++|+...
T Consensus 114 ~~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~~~~ 183 (232)
T 3dc7_A 114 GALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRD 183 (232)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEecccc
Confidence 3667777776544 2 577776532 779999999999999999998765
No 105
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.57 E-value=1.7 Score=36.91 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 355 VWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 355 g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
.+-+||++++++||++..|++.+..
T Consensus 159 ~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 159 PQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp CSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998854
No 106
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=69.18 E-value=2.1 Score=37.70 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
++++|.|++|||-+.--|+ .+|++|+-+=.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 7899999999999987776 36888875443
No 107
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=69.15 E-value=3.1 Score=39.97 Aligned_cols=49 Identities=22% Similarity=0.179 Sum_probs=31.2
Q ss_pred hhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCcee
Q 016228 231 RIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKV 279 (393)
Q Consensus 231 RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KV 279 (393)
=.+++.+.++|.+--.-..-..--|+|.|.++||||=++-.+| ..|..+
T Consensus 63 l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 63 LKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp HHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3456666666654211111112248999999999999999999 445443
No 108
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=68.95 E-value=0.85 Score=39.23 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVA 280 (393)
|+|+|+|+||||=++-.|+. .|++|.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 78999999999999999883 366653
No 109
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=68.84 E-value=2 Score=42.30 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
|+|+|.|++|||=++.-|| +.|..
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~~ 34 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNGE 34 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred EEEECCCcCcHHHHHHHHHHHcCCc
Confidence 7899999999999999999 56743
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.33 E-value=1.7 Score=37.16 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=40.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhh--cCCCCCCCCCCCC-HHHHHHHHHHHH-HH---hhhCCCCcEEeCCCccHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARS--LGFRDEIRSNYSE-MDYVREELEFAG-RI---FAQNPVWPVIEVTGKAIEETA 370 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~--lGl~~~~~S~YAs-~e~I~~EL~~A~-~l---f~k~~g~pVIDVT~kSIEEtA 370 (393)
..++++=|++|++-+.++|+.-.+. .-+..+....... .+.| +.+..|. ++ +... +-++ +.+-.+|++.
T Consensus 94 ~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R~~~i-~r~~~~~~~~~~~~~~~--~d~~-i~n~~~~~~~ 169 (180)
T 1kgd_A 94 EQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESL-QRLQKESDILQRTYAHY--FDLT-IINNEIDETI 169 (180)
T ss_dssp HTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCCSHHH-HHHHHHHHHHHHHHGGG--CSEE-EECSSHHHHH
T ss_pred HCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhhHHHH-HHHHHHHHHHHHhhhCC--CcEE-EECcCHHHHH
Confidence 4578899999999988886421110 0111111112222 1334 4455553 22 2332 3333 1223799999
Q ss_pred HHHHHHHh
Q 016228 371 AVVLRLYH 378 (393)
Q Consensus 371 a~Il~~~~ 378 (393)
+.|.+++.
T Consensus 170 ~~l~~~i~ 177 (180)
T 1kgd_A 170 RHLEEAVE 177 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 111
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=68.25 E-value=2.1 Score=39.17 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ--KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~--~G~KVA 280 (393)
|+|.|+|+||||=++-.||+ .|+.+-
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 79999999999999999996 366554
No 112
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=68.25 E-value=2.3 Score=38.81 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
|+|.|.|++||+=|++.|.++|++..
T Consensus 19 vli~G~SGaGKStlal~L~~rG~~lv 44 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDRGHQLV 44 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHTTCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCeEe
Confidence 89999999999999999999998754
No 113
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.19 E-value=2.8 Score=39.25 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|||.|+|+||||=++-.|+.
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=67.80 E-value=2.5 Score=35.02 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=27.2
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 284 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPL 284 (393)
..--|+|+|.+++|||=|.-.|++....+.++|-
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~ 39 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPG 39 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCC
Confidence 3456999999999999999999876566666663
No 115
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.23 E-value=1.9 Score=35.67 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=24.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
.-|+|.|.++||||=+.-++++..-+ .+.|++
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~v 56 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRN-AQGEFV 56 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTT-TTSCCE
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCc-cCCCEE
Confidence 45999999999999999999976322 244544
No 116
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=67.05 E-value=2.3 Score=37.60 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCcee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KV 279 (393)
|+|.|.++||||=+.-.+|+ .|..+
T Consensus 42 vll~G~~GtGKT~la~~la~~~~~~~ 67 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQVPF 67 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 89999999999999999994 45443
No 117
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=66.57 E-value=27 Score=33.41 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=52.2
Q ss_pred EeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHh-------hCCCEEEEEcCCH
Q 016228 103 VSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAA-------KDGAMLVYTLADP 174 (393)
Q Consensus 103 VSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~-------~~~~iV~~Tlvd~ 174 (393)
-.+..|. -|+.+++.+....|+ +++..++. .+++.+.+.++++.+. +.--+|+-..-|.
T Consensus 82 ~~~diG~~Ka~aa~~~L~~iNP~--------v~v~~~~~-----~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~ 148 (292)
T 3h8v_A 82 QPHQAGLSKVQAAEHTLRNINPD--------VLFEVHNY-----NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF 148 (292)
T ss_dssp --CCTTSBHHHHHHHHHHHHCTT--------SEEEEECC-----CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH
T ss_pred ChhhcCchHHHHHHHHHHhhCCC--------cEEEEecc-----cCCcHHHHHHHhhhhcccccccCCCCCEEEECCcch
Confidence 3455665 355555555555565 34444432 1666667777665431 2235999999999
Q ss_pred HHHHHHHHHHHHcCCCEeec
Q 016228 175 SMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDl 194 (393)
+.|..+.+.|.+.++|+|+.
T Consensus 149 ~~R~~in~~c~~~~~Pli~~ 168 (292)
T 3h8v_A 149 EARMTINTACNELGQTWMES 168 (292)
T ss_dssp HHHHHHHHHHHHHTCCEEEE
T ss_pred hhhhHHHHHHHHhCCCEEEe
Confidence 99999999999999999874
No 118
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=66.56 E-value=2 Score=36.52 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 355 VWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 355 g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
.|-+||.+ +++||++..|++.+...
T Consensus 184 ~~~~Id~~-~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 184 NFIVIDGT-KTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp TCEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred CEEEEECC-CCHHHHHHHHHHHHHHH
Confidence 57899975 79999999999988653
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=66.25 E-value=2.7 Score=37.89 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
++|.|.++||||=+.-.+| ..|..+.
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999 4455443
No 120
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.16 E-value=2.5 Score=40.13 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=23.3
Q ss_pred cEEEEccCCCCCChhhHHhh-----hcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLA-----QKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-----~~G~KVANvP 283 (393)
=|+|+|++++|||=|+.-|| ..|+||.=+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 37789999999999988877 3687765433
No 121
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=66.03 E-value=55 Score=26.93 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeecccc--------------------CCCCCCccccc--cCCCcEEE
Q 016228 247 PQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV--------------------MGVELPKSLFQ--VDPEKVFG 304 (393)
Q Consensus 247 p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV--------------------p~v~lP~~L~~--i~~~KI~G 304 (393)
+..-...-|+|+|-+.+|||=|.-.|.+..+...++.-. |+.+--..+.. ...-.++=
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 334455679999999999998888887544433222111 11111111111 11223444
Q ss_pred EecC---hhHHHHHHHHHHhhcCC-----------CCC--------CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCC
Q 016228 305 LTIN---PLVLQSIRKARARSLGF-----------RDE--------IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVT 362 (393)
Q Consensus 305 LTId---P~rL~~IR~eRl~~lGl-----------~~~--------~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT 362 (393)
|.+| ++.+..+++.-...+.. ..+ .-..-.+.+.+.+++. ...++++. +|+++-++
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~S 169 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD-LTTLMGDH-PFVIFASN 169 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT-HHHHHTTS-CEEEEECB
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc-chhhccCC-eeEEEEee
Confidence 4444 44455554433222111 000 0111123455655554 22333665 89999885
Q ss_pred ---CccHHHHHHHHHHHHhhccc
Q 016228 363 ---GKAIEETAAVVLRLYHDRKH 382 (393)
Q Consensus 363 ---~kSIEEtAa~Il~~~~~r~~ 382 (393)
+..|+|.-..|++.+.++..
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC-
T ss_pred CCCccCHHHHHHHHHHHHHHHhc
Confidence 45799999999988866543
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=65.25 E-value=2.3 Score=35.86 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.2
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhhcc
Q 016228 356 WPVIEVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 356 ~pVIDVT~kSIEEtAa~Il~~~~~r~ 381 (393)
..+||+++.++||++..|++.+....
T Consensus 152 ~~~i~t~~~~~~~~~~~i~~~l~~~~ 177 (191)
T 1zp6_A 152 HHVLPVSGKDTDQALQSAINALQSGR 177 (191)
T ss_dssp GGEEECTTCCTTTTTTTTHHHHHHTT
T ss_pred ccEEECCCCCHHHHHHHHHHHHHhhh
Confidence 45899999999999999999986543
No 123
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.84 E-value=2.7 Score=37.15 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=14.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
++|+|+|++|||=|+-.|+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEECSCC----CHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 124
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=64.11 E-value=3 Score=41.91 Aligned_cols=27 Identities=41% Similarity=0.588 Sum_probs=23.2
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceee
Q 016228 254 DIILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
=|+++|.+++|||=|+.-|| ++|+||+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 48899999999999988777 4689986
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=64.02 E-value=2.8 Score=35.86 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
++..-. ++|+|.+++|||=+++-|| ..|.+|.=+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i 51 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYV 51 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEE
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 344444 5789999999999999998 445555443
No 126
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=63.94 E-value=16 Score=36.01 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=21.5
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhhh
Q 016228 249 NLQKADI-ILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eADI-VLvGVSRTsKTPlSmYLA~ 274 (393)
||..-++ +|.|.+++|||=+++-+|.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5666665 6679999999999999984
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=63.80 E-value=2.2 Score=36.06 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-----cCceeee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-----KGYKVAN 281 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-----~G~KVAN 281 (393)
=++|+|.++||||=|...+|+ .|+++.-
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 389999999999999988873 3665544
No 128
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=63.80 E-value=2.1 Score=40.68 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.7
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
...-|+|.|.++||||=++-.||+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999954
No 129
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=63.70 E-value=21 Score=32.73 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=47.6
Q ss_pred hH-HHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHH
Q 016228 107 TG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACE 185 (393)
Q Consensus 107 TG-eTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~ 185 (393)
.| .-|+.+++.+...+|++ ++..++. ++ +.+.+.+++.+ --+|+-+.-+.+.+..+.+.|.
T Consensus 82 iG~~Ka~~~~~~l~~~np~~--------~v~~~~~-----~~-~~~~~~~~~~~----~DvVi~~~d~~~~~~~l~~~~~ 143 (249)
T 1jw9_B 82 VGQPKVESARDALTRINPHI--------AITPVNA-----LL-DDAELAALIAE----HDLVLDCTDNVAVRNQLNAGCF 143 (249)
T ss_dssp TTSBHHHHHHHHHHHHCTTS--------EEEEECS-----CC-CHHHHHHHHHT----SSEEEECCSSHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHCCCc--------EEEEEec-----cC-CHhHHHHHHhC----CCEEEEeCCCHHHHHHHHHHHH
Confidence 45 35677777666667753 2333332 02 34555555533 2488888899999999999999
Q ss_pred HcCCCEeec
Q 016228 186 LWGIPSTDV 194 (393)
Q Consensus 186 ~~gi~~vDl 194 (393)
+.|+|+|+.
T Consensus 144 ~~~~p~i~~ 152 (249)
T 1jw9_B 144 AAKVPLVSG 152 (249)
T ss_dssp HHTCCEEEE
T ss_pred HcCCCEEEe
Confidence 999999984
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=63.40 E-value=2.6 Score=41.01 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=30.6
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
-|||+|||-+.+|||=|.-.|.+.-.+++|||..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftT 192 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTT 192 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccc
Confidence 48999999999999999888887778999999653
No 131
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=62.33 E-value=5.8 Score=37.51 Aligned_cols=51 Identities=25% Similarity=0.132 Sum_probs=32.9
Q ss_pred CcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 224 LSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
+++.--.=.+++.+.++|.+--.-..-.--=|+|.|.++||||=+.-.+|+
T Consensus 17 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 17 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 333333334677888887754221111112489999999999999999995
No 132
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=62.20 E-value=3 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=22.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
.-|+|||.+++|||=|.--|+..-..+.++|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~ 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWP 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC---
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCC
Confidence 3489999999999998888886545566665
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=62.10 E-value=3 Score=38.92 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
++|.|.++||||=++-.+| ..|+++..+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 5566999999999999999 456655443
No 134
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=61.85 E-value=3.2 Score=42.26 Aligned_cols=29 Identities=34% Similarity=0.595 Sum_probs=23.2
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeee
Q 016228 253 ADIILSGVSRTGKTPLSIYLA----QKGYKVAN 281 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA----~~G~KVAN 281 (393)
.=|+++|++++|||-|+.-|| ++|+||+=
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 348899999999999876666 56999853
No 135
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=61.81 E-value=10 Score=31.99 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhCC---CEEEEEcC--------------C---HHHHHHHHHHHHHcCCCEeecchHHH
Q 016228 151 EQLMVIIKQAAKDG---AMLVYTLA--------------D---PSMAESAKKACELWGIPSTDVLGPIT 199 (393)
Q Consensus 151 e~l~~ii~~a~~~~---~iV~~Tlv--------------d---~eLr~~l~~~~~~~gi~~vDll~p~i 199 (393)
+.++++|+.+++.+ .+|+.|+. + .++.+.+++.|++.|++++|+...+.
T Consensus 96 ~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~ 164 (200)
T 4h08_A 96 KSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIEVNDLWKVVI 164 (200)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTCEEECHHHHHT
T ss_pred HHHHHHHHHHhhhCCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhhcceEEEecHHhHh
Confidence 34566677765443 35555542 1 24567788999999999999876654
No 136
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=61.64 E-value=6 Score=37.85 Aligned_cols=49 Identities=24% Similarity=0.210 Sum_probs=30.2
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceee
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
.+++++.+.+.+--.--+-...-|+|.|.++||||=+.-.+| ..|..+.
T Consensus 97 ~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 97 KEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp HHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 345555555554211000112249999999999999999999 4565443
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.55 E-value=2.8 Score=35.58 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|.|++|||=++-.||.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68999999999999999984
No 138
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=61.48 E-value=4 Score=26.37 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHhh
Q 016228 365 AIEETAAVVLRLYHD 379 (393)
Q Consensus 365 SIEEtAa~Il~~~~~ 379 (393)
||||+|.+|.+..-+
T Consensus 2 sIEEaA~RIVdaVi~ 16 (26)
T 2drn_C 2 LIEEAASRIVDAVIE 16 (26)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 899999999986644
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=61.03 E-value=3.9 Score=37.15 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.7
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KV 279 (393)
-++|.|.++||||=+.-.+| ..|...
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 48999999999999999999 455443
No 140
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=60.98 E-value=24 Score=27.35 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=36.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 166 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 166 iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
+|+..=++|++...+...|++++||++.+.+ ...|....|.+.
T Consensus 31 ViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~s--k~eLG~a~Gk~~ 73 (82)
T 3v7e_A 31 VVVAKDADPILTSSVVSLAEDQGISVSMVES--MKKLGKACGIEV 73 (82)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHTCCEEEESC--HHHHHHHHTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHhCCCC
Confidence 5566678899999999999999999999874 478888888764
No 141
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=60.52 E-value=6.4 Score=37.85 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=23.3
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceeee
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ-KGYKVAN 281 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~-~G~KVAN 281 (393)
.-|+|.|.++||||=+.-.+|+ .|..+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 4599999999999999999994 4554433
No 142
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=60.44 E-value=3.5 Score=37.11 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.7
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGY 277 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~ 277 (393)
-++|.|.++||||=++-++|+ .|.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 499999999999999999994 443
No 143
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=60.27 E-value=3 Score=37.29 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=21.2
Q ss_pred CCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCce
Q 016228 219 GRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYK 278 (393)
Q Consensus 219 G~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~K 278 (393)
|.--.+-+.||..+.. .+ -=|+|+|.+++|||=++--|| ..|+.
T Consensus 10 ~~~~~~~~~~~~~~~~-----------~~-----~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 10 GVDLGTENLYFQSMAS-----------KL-----LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp ---------------------------CC-----CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ccchhHHHHHHHHhcC-----------CC-----cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3333444788887542 11 138999999999999999998 33553
No 144
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=59.97 E-value=11 Score=32.20 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCC-------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016228 151 EQLMVIIKQAAKDGAMLVYTLAD-------------PSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 151 e~l~~ii~~a~~~~~iV~~Tlvd-------------~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
+.+.++|+.+.+...+|+.|+.- .++.+.+++.|+++|++++|+...+
T Consensus 117 ~~l~~li~~l~~~~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~ 177 (218)
T 1vjg_A 117 KNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLL 177 (218)
T ss_dssp HHHHHHHHHHHHHSCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECCTGGG
T ss_pred HHHHHHHHHHHHhCcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEehHHhh
Confidence 44555666653324577766532 2578899999999999999998765
No 145
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=59.81 E-value=25 Score=29.58 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.1
Q ss_pred CCcEEEEecChhHHHH
Q 016228 299 PEKVFGLTINPLVLQS 314 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~ 314 (393)
+..+|-|+++++.+.+
T Consensus 122 ~~~vi~l~~~~e~~~~ 137 (213)
T 2plr_A 122 PDITFYIRVSPDIALE 137 (213)
T ss_dssp CSEEEEEECCHHHHHH
T ss_pred CCEEEEEeCCHHHHHH
Confidence 4568999999976643
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=59.59 E-value=4.2 Score=37.82 Aligned_cols=39 Identities=26% Similarity=0.500 Sum_probs=27.3
Q ss_pred hhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 232 IEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 232 IeAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
.+++++.++|.+ |..+ ..-|+|.|.++||||=++-.||+
T Consensus 28 ~~~v~~~~~~~~~~~~~~~~~----~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 28 QELVQYPVEHPDKFLKFGMTP----SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp HHHHHHHHHCHHHHHHHCCCC----CSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHcCCCC----CceEEEECCCCcCHHHHHHHHHH
Confidence 345666665544 2222 12389999999999999999994
No 147
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=59.55 E-value=3.3 Score=36.92 Aligned_cols=75 Identities=13% Similarity=0.007 Sum_probs=27.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHHHh--hhCCCCcEEeCCCccHHHHHHH
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGRIF--AQNPVWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs---~e~I~~EL~~A~~lf--~k~~g~pVIDVT~kSIEEtAa~ 372 (393)
.++.+|=|+++|+.+.+--.+| |-.. ..+.+ .++++.-....-+.| ++.-.|-+||. +.++||+...
T Consensus 146 ~pD~vi~Ld~~~e~~~~Ri~~R----~r~~---e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-~~~~eev~~~ 217 (230)
T 2vp4_A 146 QADLIIYLRTSPEVAYERIRQR----ARSE---ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-DLNLENIGTE 217 (230)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----CCGG---GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-CC--------
T ss_pred CCCEEEEEeCCHHHHHHHHHHc----CCcc---cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-CCCHHHHHHH
Confidence 4677999999998776522234 3211 11222 233332221111111 12113678996 5699999999
Q ss_pred HHHHHhhc
Q 016228 373 VLRLYHDR 380 (393)
Q Consensus 373 Il~~~~~r 380 (393)
|.+.+...
T Consensus 218 I~~~l~~~ 225 (230)
T 2vp4_A 218 YQRSESSI 225 (230)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99988653
No 148
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=59.23 E-value=4 Score=39.13 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
+|..-. ++|.|.++||||-+++.||.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 555555 46889999999999999994
No 149
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.16 E-value=4.6 Score=40.74 Aligned_cols=55 Identities=31% Similarity=0.394 Sum_probs=39.5
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 224 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
|++.--.=-|+|+|-++|-+ |..|. -=|+|.|+++||||=+.--+| +.|...-++
T Consensus 153 l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~p----rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 153 LTKQIKEIKEVIELPVKHPELFESLGIAQP----KGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----CCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 44444444588999998876 55542 138999999999999999999 456555443
No 150
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=58.67 E-value=4 Score=36.61 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
|.++|-+|||||=++.-||..|.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCe
Confidence 6789999999999999999556443
No 151
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=58.39 E-value=3.4 Score=35.31 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~ 274 (393)
--++|.|.++||||=++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988884
No 152
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=58.30 E-value=4.5 Score=37.12 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=66.8
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccC-----------C-----CCCCc---------------cccccCCCcE
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM-----------G-----VELPK---------------SLFQVDPEKV 302 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp-----------~-----v~lP~---------------~L~~i~~~KI 302 (393)
-|+|+|-+.+|||=|.-.|.....++.|+|-+- + +.+|- ..+....--+
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ 86 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADL 86 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCE
Confidence 489999999999999988887778899998432 0 01111 1111112234
Q ss_pred EEEecChhHHHHHHHH--HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHH
Q 016228 303 FGLTINPLVLQSIRKA--RARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLY 377 (393)
Q Consensus 303 ~GLTIdP~rL~~IR~e--Rl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~ 377 (393)
+=+.+|...+.+.-.. .+..+|.+-----+=.|+..-+.--..++++.+++ |||++-++ +..|+|.-..|.+.+
T Consensus 87 ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 87 VILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp EEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 5566665443322111 12223321000001112211000001245666674 99999886 568999999998877
Q ss_pred h
Q 016228 378 H 378 (393)
Q Consensus 378 ~ 378 (393)
.
T Consensus 166 ~ 166 (258)
T 3a1s_A 166 Q 166 (258)
T ss_dssp H
T ss_pred h
Confidence 5
No 153
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.21 E-value=4.2 Score=36.33 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|.++||||=++-.||+
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 99999999999999999994
No 154
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=58.08 E-value=4 Score=40.99 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEEEccCCCCCChhhHHhh----hc-Cceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QK-GYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~-G~KVA 280 (393)
|+++|.+++|||=++.-|| .+ |+||.
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 7788999999999888777 45 99887
No 155
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=57.96 E-value=3.4 Score=37.59 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-++|.|.++||||=+.-.+|+
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999988884
No 156
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=57.95 E-value=41 Score=30.15 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=43.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------hhCCCCcEEeCCCc
Q 016228 298 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF-------------AQNPVWPVIEVTGK 364 (393)
Q Consensus 298 ~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf-------------~k~~g~pVIDVT~k 364 (393)
.+..+|=|+++|+.+.+-...| |-+ ...+-+.+ ..+.|....+-| .+. .|-+||.+.
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R----~r~---~~~~~~~~-~~~~l~~~~~~~~~~~~v~~~y~~~~~~-~~~~Id~~~- 243 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLR----GRN---EEQGIPLE-YLEKLHYKHESWLLHRTLKTNFDYLQEV-PILTLDVNE- 243 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----CCG---GGTTCCHH-HHHHHHHHHHHHHTTCCCCCSCGGGGGS-CEEEEECCS-
T ss_pred CCCeEEEEECCHHHHHHHHHhc----CCc---cccCccHH-HHHHHHHHHHHHHhhccchhhhhhhccC-CEEEEECCC-
Confidence 3567999999999887644444 211 01122322 222333322222 233 377899886
Q ss_pred cHHHHHHHHHHHHhh
Q 016228 365 AIEETAAVVLRLYHD 379 (393)
Q Consensus 365 SIEEtAa~Il~~~~~ 379 (393)
++||++..|++.+..
T Consensus 244 ~~eev~~~I~~~l~~ 258 (263)
T 1p5z_B 244 DFKDKYESLVEKVKE 258 (263)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998864
No 157
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=57.84 E-value=3.3 Score=37.19 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
.-|+|.|.++||||=+.-++++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 459999999999999999999653
No 158
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=57.75 E-value=35 Score=32.09 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhhc
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~~ 275 (393)
||..-+ ++|.|.+++|||=+++-+|..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 444444 677899999999999999943
No 159
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=57.35 E-value=3.7 Score=41.52 Aligned_cols=27 Identities=48% Similarity=0.668 Sum_probs=22.4
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceee
Q 016228 254 DIILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
=|+++|++++|||-|+.-|| .+|+||+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 37889999999999877666 5688885
No 160
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.02 E-value=3.5 Score=36.00 Aligned_cols=25 Identities=0% Similarity=0.062 Sum_probs=22.3
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 356 WPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 356 ~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
.-+||++++++||++..|++.+..+
T Consensus 179 ~~~IDt~~~s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 179 EVHVKNYELPVQDAVKQIIDYLDTK 203 (211)
T ss_dssp SEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999754
No 161
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=56.58 E-value=3.8 Score=35.80 Aligned_cols=19 Identities=42% Similarity=0.523 Sum_probs=17.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
++|+|+|++|||=|.--|+
T Consensus 7 i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999988886
No 162
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=56.56 E-value=19 Score=31.21 Aligned_cols=15 Identities=7% Similarity=-0.173 Sum_probs=12.1
Q ss_pred CcEEEEecChhHHHH
Q 016228 300 EKVFGLTINPLVLQS 314 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~ 314 (393)
..+|-|+.+++.+.+
T Consensus 133 ~~vi~Ld~~~e~~~~ 147 (211)
T 1m7g_A 133 FVEVYVDVPVEVAEQ 147 (211)
T ss_dssp EEEEEEECCHHHHHT
T ss_pred eEEEEEeCCHHHHHH
Confidence 468999999998765
No 163
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.20 E-value=4.9 Score=36.37 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KG 276 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G 276 (393)
=|+|+|.|+||||=++--||. .|
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999994 44
No 164
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=55.94 E-value=5 Score=34.88 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVA 280 (393)
|.|+|.|++|||=++-.|+. .|.+|.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 78999999999999999984 476654
No 165
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=55.58 E-value=9.6 Score=34.92 Aligned_cols=71 Identities=10% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHH-HHHHHhhhCC-CCcEEeCCCccHHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELE-FAGRIFAQNP-VWPVIEVTGKAIEETAAVVLR 375 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~-e~I~~EL~-~A~~lf~k~~-g~pVIDVT~kSIEEtAa~Il~ 375 (393)
|+.+|=|+++|+.+.+ |+..-|- ...|-.. ....+.+. .-+++.++.. .|-+||. ++++||+.+.|++
T Consensus 152 PDl~I~Ldv~~e~~~~----Ri~~R~~----~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa-~~s~eeV~~~I~~ 222 (227)
T 3v9p_A 152 PDLTVLFDVPPQIASA----RRGAVRM----PDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDS-SEPIAQIRKQLEG 222 (227)
T ss_dssp CSEEEEEECCSSCGGG----TTTCCCC----C---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHH----HHHhccC----ccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHH
Confidence 5678899999988754 3321121 1234331 11222222 2223443321 4889995 4899999999998
Q ss_pred HHh
Q 016228 376 LYH 378 (393)
Q Consensus 376 ~~~ 378 (393)
.+.
T Consensus 223 ~l~ 225 (227)
T 3v9p_A 223 VLA 225 (227)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 166
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=55.49 E-value=13 Score=31.05 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=25.3
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ ||+++.++ +..|+|.-..|++.+.++
T Consensus 150 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 150 KGQLLAEQL-GFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 455666674 88988874 566888888888877554
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.30 E-value=5.3 Score=37.01 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc--eeeeccccC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGY--KVANVPIVM 286 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~--KVANvPLVp 286 (393)
-++|.|.++||||=+.-++|+ .|. ...|-+.+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE 92 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc
Confidence 499999999999999999994 443 345555543
No 168
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=54.90 E-value=3.1 Score=41.07 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPL 284 (393)
++|.|.++||||-+++.+|+ .|++|.=+-+
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 58899999999999999994 5666554444
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=54.49 E-value=4.4 Score=34.69 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=23.2
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ----KGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~----~G~KVANvP 283 (393)
-++|.|.++||||=+...+|+ .|+++.-+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 499999999999999988883 345554443
No 170
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=54.44 E-value=4.9 Score=39.85 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=21.0
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGY 277 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~ 277 (393)
-++|.|+++||||-++..||+ .|.
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCC
Confidence 399999999999999999994 453
No 171
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=54.23 E-value=8.1 Score=32.55 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=23.4
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ----KGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~----~G~KVANvP 283 (393)
=++|+|.++||||=|.--+++ .|+++.-++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 488999999999999888773 376665544
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=54.21 E-value=3.8 Score=33.84 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
.-|+|.|.++||||=+.-++++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 349999999999999999998654
No 173
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=54.04 E-value=5.6 Score=37.85 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCce
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ-KGYK 278 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~-~G~K 278 (393)
.-++|.|.++||||=+.-.||+ .|..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3599999999999999999994 4443
No 174
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=53.79 E-value=8.1 Score=36.61 Aligned_cols=26 Identities=54% Similarity=0.727 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|+++|.+++|||=++.-|| ..|.||.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6789999999999988877 4588876
No 175
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=53.68 E-value=5.6 Score=34.19 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc---Cceeeec
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK---GYKVANV 282 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~---G~KVANv 282 (393)
-|+++|-+++|||-|.-.|++. .+|++.+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i 63 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGNEVKIGAM 63 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEE
Confidence 4899999999999999888832 3566544
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.64 E-value=21 Score=30.09 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-HHhhhC-CCCcEEeCCCccHHHHHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG-RIFAQN-PVWPVIEVTGKAIEETAAVVLRL 376 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~-~lf~k~-~g~pVIDVT~kSIEEtAa~Il~~ 376 (393)
++.+|=|+++|+.+.+ .| |- ..+.. +.+.+.+..+. ++.... ..|-+||. +.++||++..|++.
T Consensus 122 ~d~vi~l~~~~e~~~~---~R----~~-----d~~e~-~~~~~rl~~~y~~~~~~~~~~~~~Id~-~~~~~~v~~~i~~~ 187 (204)
T 2v54_A 122 PDLVIFLESGSKEINR---NV----GE-----EIYED-VTFQQKVLQEYKKMIEEGDIHWQIISS-EFEEDVKKELIKNI 187 (204)
T ss_dssp CSEEEEECCCHHHHTT---CC----SS-----STTCC-SHHHHHHHHHHHHHHTTCSSCEEEECT-TSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHh---hc----Cc-----ccccH-HHHHHHHHHHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHH
Confidence 4578999999997766 22 11 12322 24444443322 222221 14678996 69999999999998
Q ss_pred Hhhc
Q 016228 377 YHDR 380 (393)
Q Consensus 377 ~~~r 380 (393)
+...
T Consensus 188 l~~~ 191 (204)
T 2v54_A 188 VIEA 191 (204)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=53.61 E-value=4.7 Score=33.59 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|.|.++||||=+.-.+|+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998884
No 178
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=53.59 E-value=17 Score=29.64 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhCCCEEEEEcCC--------------HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016228 151 EQLMVIIKQAAKDGAMLVYTLAD--------------PSMAESAKKACELWGIPSTDVLGPITE 200 (393)
Q Consensus 151 e~l~~ii~~a~~~~~iV~~Tlvd--------------~eLr~~l~~~~~~~gi~~vDll~p~i~ 200 (393)
+.+..+++.+. ...+|+.|+.. .++.+.+++.|++.|++++|+...+..
T Consensus 93 ~~l~~~i~~~~-~~~vi~~~~~p~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~iD~~~~~~~ 155 (195)
T 1yzf_A 93 ENLETMIHEIG-SEKVILITPPYADSGRRPERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTV 155 (195)
T ss_dssp HHHHHHHHHHC-GGGEEEECCCCCCTTTCTTSCHHHHHHHHHHHHHHHHHTTCCEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCEEEEEcCCCCccccchhhhHHHHHHHHHHHHHHHHHhCCeEEehHHHHhh
Confidence 34566666665 33577777641 356788899999999999998877653
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=53.29 E-value=4.6 Score=35.06 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
++..-. ++|+|.+++|||=|+.-||.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 455544 57899999999999999985
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=53.19 E-value=5.6 Score=38.07 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|.++|++++|||=|+.-|| ..|.||.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 6799999999999998777 3577764
No 181
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=52.97 E-value=5.2 Score=37.29 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=25.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
-|+|+|-+.+|||=|---|......+.|+|
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p 34 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWP 34 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCCCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCC
Confidence 489999999999988777776556788888
No 182
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=52.97 E-value=6.6 Score=35.73 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=27.5
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
-|+|+|-+++|||=|.-.|.....++.|+|-+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~ 36 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGV 36 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCe
Confidence 48999999999999998888666788888855
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=52.82 E-value=4.6 Score=37.70 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.0
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|.|.++||||=+...+|+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999943
No 184
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.78 E-value=5.7 Score=36.59 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|.|.++||||=+.-+||+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 999999999999999999953
No 185
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=52.71 E-value=5.7 Score=37.00 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|.|.++||||=+.-.+|+.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999953
No 186
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=52.60 E-value=38 Score=27.13 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=37.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 166 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 166 iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
+|+..=+++..+..+...|+.++||++.+ +--..|...+|.++
T Consensus 39 ViiA~D~~~~~~~~i~~~c~~~~vp~~~~--~s~~eLG~A~Gk~~ 81 (101)
T 3v7q_A 39 VLLTEDASSNTAKKVTDKCNYYKVPYKKV--ESRAVLGRSIGKEA 81 (101)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHTTSSC
T ss_pred EEEeccccccchhhhcccccccCCCeeee--chHHHHHhhhCccc
Confidence 55667778999999999999999999998 46778999999886
No 187
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.58 E-value=5.2 Score=37.59 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=25.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 286 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp 286 (393)
.-|+|.|.++||||=+.-++++..-+ .+.|+|.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~ 58 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSAR-SDRPLVT 58 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSC-SSSCCCE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcc-cCCCeEE
Confidence 45999999999999999999975322 3456553
No 188
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=52.55 E-value=6.3 Score=38.40 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEe-------ecchHHHHHHHHHhCCCCCCCCCCCCC
Q 016228 149 DVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPST-------DVLGPITEAIASHLGVSPSGLPRGAPG 219 (393)
Q Consensus 149 t~e~l~~ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~v-------Dll~p~i~~Le~~lG~~P~~~~~~~pG 219 (393)
+.++-.+.++++-..+ ++||..=.. .-+.+.+.|+++|||.+ .+++-+...|+..|...-. .
T Consensus 68 ~~~~r~~~~~~l~~~~iP~IIvtrg~~--pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~~~~-----~-- 138 (312)
T 1knx_A 68 TLVEQQQILHNLLKLNPPAIILTKSFT--DPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQ-----I-- 138 (312)
T ss_dssp CHHHHTTTHHHHHTTCCSCEEEETTTC--CCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCCCEE-----E--
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECCCC--CCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhhcce-----e--
Confidence 4444455677764433 555544322 33466678999999976 4677777777777742110 1
Q ss_pred CCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 220 RNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 220 ~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
|. .+++. +| .+ |++.|.|++||+=|.+.|..+|++..
T Consensus 139 --H~---------~~v~~-----~g-------~g-vli~G~sG~GKStlal~l~~~G~~lv 175 (312)
T 1knx_A 139 --HG---------VLLEV-----FG-------VG-VLLTGRSGIGKSECALDLINKNHLFV 175 (312)
T ss_dssp --EE---------EEEEE-----TT-------EE-EEEEESSSSSHHHHHHHHHTTTCEEE
T ss_pred --EE---------EEEEE-----CC-------EE-EEEEcCCCCCHHHHHHHHHHcCCEEE
Confidence 21 12211 12 22 99999999999999999999998754
No 189
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=52.50 E-value=4.8 Score=34.62 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cC
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KG 276 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G 276 (393)
|.|+|.|+||||=++-.|+. .|
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999994 35
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=52.47 E-value=5.5 Score=37.62 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.8
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
+|..-. ++|.|.+++|||-+++.||.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 444444 67889999999999999983
No 191
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.45 E-value=4.8 Score=34.55 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
++..-+ +.|+|.|++|||=|..-||.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455444 56899999999999998874
No 192
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=52.44 E-value=5.8 Score=36.23 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGYK 278 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~K 278 (393)
-++|.|.++||||=+.-.+|+ .|..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 499999999999999999994 4543
No 193
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=52.20 E-value=7.4 Score=36.78 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhh--hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA--QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA--~~G~KVAN 281 (393)
++|+|.|++|||=+--.|+ ..|+|+|=
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aV 35 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAV 35 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEE
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEE
Confidence 6899999999999887777 34555443
No 194
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=52.10 E-value=38 Score=27.03 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=37.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
-+|+..=+++..+..+...|++++||++.+ +--..|...+|.++
T Consensus 37 lViiA~D~~~~~~~~i~~~c~~~~ip~~~~--~s~~eLG~a~Gk~~ 80 (101)
T 3on1_A 37 LVILSSDAGIHTKKKLLDKCGSYQIPVKVV--GNRQMLGRAIGKHE 80 (101)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCCEEEE--SCHHHHHHHTTSSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEEe--CCHHHHHHHhCCcC
Confidence 356677778999999999999999999976 45678999999875
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=52.09 E-value=6.8 Score=39.17 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..++|+|.++||||=+.-.||+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999965
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=52.07 E-value=5 Score=34.25 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA 273 (393)
++..-+ ++|+|.+++|||=|+..||
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344444 5688999999999999888
No 197
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=51.91 E-value=5.3 Score=36.50 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=70.7
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhh-hcCceeeec-------------------------cccCC-------------
Q 016228 248 QNLQKADI-ILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------------PIVMG------------- 287 (393)
Q Consensus 248 ~~L~eADI-VLvGVSRTsKTPlSmYLA-~~G~KVANv-------------------------PLVp~------------- 287 (393)
..+.++=| +|+|..++||+=.|-.|| .+|+..-.. -|||+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~ 103 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIK 103 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 34455554 568999999999999999 668764321 12220
Q ss_pred ---C-------CCCcccc--------ccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-----
Q 016228 288 ---V-------ELPKSLF--------QVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE----- 344 (393)
Q Consensus 288 ---v-------~lP~~L~--------~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~----- 344 (393)
. ..|..+- -.....++-|.++.+.+.+ |+..-+... +-.=-+.|.|+.=|+
T Consensus 104 ~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~----Rl~~R~~~~--~R~DD~~e~i~~Rl~~Y~~~ 177 (217)
T 3umf_A 104 LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRK----RLLKRAETS--NRVDDNEETIVKRFRTFNEL 177 (217)
T ss_dssp HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHH----HHSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHH----HHhcccccC--CCCCCCHHHHHHHHHHHHHH
Confidence 0 1222111 1244568888888877654 542111100 000011233332222
Q ss_pred --HHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhcc
Q 016228 345 --FAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 --~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r~ 381 (393)
-..+.|++.-.|-.||.+ .++||+...|.+.+.+..
T Consensus 178 t~pl~~~Y~~~~~l~~Idg~-~~~eeV~~~I~~~l~k~G 215 (217)
T 3umf_A 178 TKPVIEHYKQQNKVITIDAS-GTVDAIFDKVNHELQKFG 215 (217)
T ss_dssp THHHHHHHHTTTCEEEEETT-SCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHHHcC
Confidence 223457764236678866 699999999999997654
No 198
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=51.83 E-value=9.4 Score=36.03 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.3
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-----hcCcee
Q 016228 234 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-----QKGYKV 279 (393)
Q Consensus 234 AIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA-----~~G~KV 279 (393)
|.+|+-.+.++ ..--++|.|.++||||=|+..+| .+|++|
T Consensus 140 ~~~~i~~~~~~------~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 140 ILDFVEQYPSA------EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp HHHHHHHCSCS------SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHhcccc------CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 44566555443 12459999999999999988877 346666
No 199
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=51.62 E-value=6.7 Score=34.16 Aligned_cols=30 Identities=40% Similarity=0.567 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceeeeccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK----GYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~----G~KVANvPL 284 (393)
|.|+|.|++|||=|.--|+.. |.++.-+++
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 669999999999998877732 444555554
No 200
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=51.42 E-value=21 Score=32.42 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=20.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
--|+|||-+++|||=|.--|...+....++|
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~ 39 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYP 39 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCC
Confidence 4599999999999987766666667777775
No 201
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=51.21 E-value=5.7 Score=32.69 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=24.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
-|+++|-+++|||=|.-.|.+.-+.+.+.|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~ 32 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP 32 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSST
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCC
Confidence 389999999999999988886656666665
No 202
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=51.00 E-value=3.9 Score=35.65 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=20.3
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
++.+-+ +.|+|.+++|||=|..-|+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455544 56899999999999987773
No 203
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.98 E-value=5.2 Score=36.29 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|+|.++||||=+.-+||+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999999954
No 204
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=50.77 E-value=4.1 Score=34.64 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.5
Q ss_pred EEEEccCCCCCChhhHH
Q 016228 255 IILSGVSRTGKTPLSIY 271 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmY 271 (393)
+.|+|.|++|||=|.--
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57999999999988764
No 205
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=50.14 E-value=3 Score=37.38 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|.|.++||||=+.-.||+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999994
No 206
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=50.09 E-value=7.3 Score=35.71 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=26.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
|+|+|-+.+|||=|.-.|.....++.|+|-+
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~ 34 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGV 34 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEECTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCccCCCCc
Confidence 8999999999998888888666889998855
No 207
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=49.94 E-value=6.8 Score=36.02 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=23.6
Q ss_pred cEEEEccCCCCCChhhHHhhh-c------Cceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-K------GYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~------G~KVANvP 283 (393)
=++|.|.+|||||=+.-.+++ . |+.+.-+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 389999999999999999884 2 66655443
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.73 E-value=6.6 Score=39.67 Aligned_cols=55 Identities=31% Similarity=0.328 Sum_probs=38.1
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 224 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
+++.--.=.++|++-++|-+ |..+. -=|+|.|+++||||=+.-.+| +.|....++
T Consensus 177 l~~~k~~l~e~v~~pl~~p~~~~~~g~~~p----rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 177 LDMQKQEIREAVELPLVQADLYEQIGIDPP----RGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----ceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 33333334478888888865 54432 128999999999999999999 456555444
No 209
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=49.65 E-value=5.7 Score=35.86 Aligned_cols=78 Identities=8% Similarity=0.018 Sum_probs=43.4
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCC-----CCC--------CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGF-----RDE--------IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAI 366 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl-----~~~--------~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSI 366 (393)
++++=|++|++-..+|++. +.. |. +.+ -.-..-+.+.|+.-+..|+.-+....++-++ +.+-..
T Consensus 108 G~illLDLD~~~~~~i~~~-l~~-~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~~~d~~-i~Nd~l 184 (219)
T 1s96_A 108 GVDVFLDIDWQGAQQIRQK-MPH-ARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYL-IVNDDF 184 (219)
T ss_dssp TCEEEEECCHHHHHHHHHH-CTT-CEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGGGSSEE-EECSSH
T ss_pred CCeEEEEECHHHHHHHHHH-ccC-CEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccCCCEE-EECcCH
Confidence 5677788888777777642 210 10 000 0001346677887777775544421122222 334588
Q ss_pred HHHHHHHHHHHhhc
Q 016228 367 EETAAVVLRLYHDR 380 (393)
Q Consensus 367 EEtAa~Il~~~~~r 380 (393)
|++...+..++...
T Consensus 185 ~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 185 DTALTDLKTIIRAE 198 (219)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888543
No 210
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=49.32 E-value=6.5 Score=37.68 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=27.7
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeeccccCCCC
Q 016228 254 DIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMGVE 289 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp~v~ 289 (393)
-|+|+|..++|||=++.-|+ ..|.||+.+..-|..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 48999999999999888776 4699999988776433
No 211
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.22 E-value=7.4 Score=39.28 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.2
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
-++|.|.++||||=+...|| ..|+.+..+
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 48999999999999999999 567766544
No 212
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=49.16 E-value=7.2 Score=34.01 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=24.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 284 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPL 284 (393)
--|+|+|-+++|||=|.-.|.+..+.+.++|.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~ 61 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSF 61 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCC
Confidence 45999999999999998888866565565554
No 213
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=49.11 E-value=6.2 Score=33.08 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|.|.++||||=+.-.+|+
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999884
No 214
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=49.06 E-value=6.6 Score=38.82 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
-|+|||.+.+|||=|---|.+...+++|||..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~t 35 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFC 35 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCc
Confidence 48999999999998888888766899999964
No 215
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=48.85 E-value=29 Score=36.01 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCC--CCCCCcHHHHhhhhhhhhhhhCCCCCCCC
Q 016228 171 LADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPG--RNFPLSEEYFRRIEAIEFTIKQDDGALPQ 248 (393)
Q Consensus 171 lvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG--~~~~ld~~YF~RIeAIEFAlkhDDG~~p~ 248 (393)
-+|.++.+.|+..--+.+| -+++-.-+++.|.+.....-. .++ +...+.+..-+.+. ..+++.+..
T Consensus 222 ~ide~~l~el~~~Ll~aDv-~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~~l~~~l~~~l~------~~~~~Isl~ 289 (503)
T 2yhs_A 222 KIDDDLFEELEEQLLIADV-GVETTRKIITNLTEGASRKQL-----RDAEALYGLLKEEMGEILA------KVDEPLNVE 289 (503)
T ss_dssp BCSHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHTC-----CBGGGHHHHHHHHHHHHHH------TTBCCCCCC
T ss_pred CCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHhC------CCCCCceee
Confidence 3567777777766666555 445556666666543321110 111 00011111111111 123444443
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
+..-. |.|||+|++|||=|.--||.
T Consensus 290 -i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 290 -GKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp -SCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred -ccCCeEEEEECCCcccHHHHHHHHHH
Confidence 33333 66999999999999888874
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=48.83 E-value=7.2 Score=37.44 Aligned_cols=26 Identities=46% Similarity=0.626 Sum_probs=21.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|.++|++++|||=|+.-|| ..|.||.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6788999999999888776 4677774
No 217
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=48.61 E-value=1.2e+02 Score=29.18 Aligned_cols=148 Identities=16% Similarity=0.057 Sum_probs=87.0
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCC---CEEEEE
Q 016228 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDG---AMLVYT 170 (393)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~---~iV~~T 170 (393)
...++.|++|.|--+.. ..++.-...+..+ +..+..+.||- =.|++++.+.|+++.++. +|+++-
T Consensus 33 ~~P~Lavilvg~dpaS~--~Yv~~k~k~~~~~----Gi~~~~~~lp~------~~s~~ell~~I~~lN~d~~v~GIlvql 100 (285)
T 3l07_A 33 ITPKLVAIIVGNDPASK--TYVASKEKACAQV----GIDSQVITLPE------HTTESELLELIDQLNNDSSVHAILVQL 100 (285)
T ss_dssp CCCEEEEEEESCCHHHH--HHHHHHHHHHHHH----TCEEEEEEECT------TCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred CCceEEEEEECCCHHHH--HHHHHHHHHHHHc----CCeEEEEECCC------CCCHHHHHHHHHHHhCCCCCcEEEEcC
Confidence 35667889998877643 3333333333222 24577788876 678999999999886553 555543
Q ss_pred -cC----CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCC
Q 016228 171 -LA----DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGA 245 (393)
Q Consensus 171 -lv----d~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~ 245 (393)
|- ...+.+++. -+. =+|-|+|+ +.-.-..|..|.. +--.-..=|+.++.. +
T Consensus 101 Plp~~id~~~v~~~I~---p~K---DVDG~~~~-N~G~l~~g~~~~~-----------~PcTp~gv~~lL~~~----~-- 156 (285)
T 3l07_A 101 PLPAHINKNNVIYSIK---PEK---DVDGFHPT-NVGRLQLRDKKCL-----------ESCTPKGIMTMLREY----G-- 156 (285)
T ss_dssp SCCTTSCHHHHHHHSC---GGG---BTTCCSHH-HHHHHHHTCTTCC-----------CCHHHHHHHHHHHHT----T--
T ss_pred CCCCCcCHHHHHhhCC---ccc---ccccCChh-heeehhcCCCCCC-----------CCCCHHHHHHHHHHh----C--
Confidence 22 123333332 232 34667774 2223334532321 222333334444432 1
Q ss_pred CCCCCCcCcEEEEccCCCCCChhhHHhhhcCcee
Q 016228 246 LPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKV 279 (393)
Q Consensus 246 ~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KV 279 (393)
-+|..+.+++||-|+.==.|+++.|+++|..|
T Consensus 157 --i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtV 188 (285)
T 3l07_A 157 --IKTEGAYAVVVGASNVVGKPVSQLLLNAKATV 188 (285)
T ss_dssp --CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred --CCCCCCEEEEECCCchhHHHHHHHHHHCCCeE
Confidence 26788999999999964569999999998765
No 218
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=48.45 E-value=7.4 Score=36.64 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|.++|.+++|||-++.-|| ..|.||.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 6688999999999998887 3466664
No 219
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=48.24 E-value=6.1 Score=35.05 Aligned_cols=46 Identities=4% Similarity=0.008 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHhh-h-CCCCcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 334 SEMDYVREELEFAGRIFA-Q-NPVWPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 334 As~e~I~~EL~~A~~lf~-k-~~g~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
.+.+.|++.|..+.+-+. . ..+|..|=|++ ..||+.+.+.+++...
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~-~~~ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELHEANLLNFNLSIIND-DLTLTYQQLKNYLLNS 208 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCEEEECC-CHHHHHHHHHHHHHHH
Confidence 355667777766544322 0 01578887777 6899999988888654
No 220
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=48.22 E-value=81 Score=27.74 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=64.5
Q ss_pred cEEEEEeCCh-HHH--HHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHH-------HHHHHHHhhCC--C
Q 016228 98 KSIYMVSDGT-GWT--AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQL-------MVIIKQAAKDG--A 165 (393)
Q Consensus 98 ~~IfiVSDsT-GeT--Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l-------~~ii~~a~~~~--~ 165 (393)
..|-+|-=+| ..| .+.-.+++..+.|+. .+...++|+ .-..+.+..+. .+.++.+.+.| +
T Consensus 7 ~~ig~i~p~~~~~~~e~~~~~~~~~~~~p~~------~i~~~~~p~--g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~ 78 (228)
T 2eq5_A 7 YTIGLIRVITLEDKEILNLHGRIIESAFPEL------KVVSRCIED--QPKGIYNEETEREAEPKIIRLAKEFEREGVDA 78 (228)
T ss_dssp EEEEEEESSCCCCHHHHTHHHHHHHHHCTTE------EEEEEECSS--CTTCCSSHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred eEEEEEeccCccCHHHHHHHHHHHHhhCCCC------eEEEEeCCC--CchhccccccHHHhHHHHHHHHHHHHHCCCCE
Confidence 3455553333 223 344456667778863 355577776 22235443222 22233334444 5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhh-hhhhhhh
Q 016228 166 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRI-EAIEFTI 239 (393)
Q Consensus 166 iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RI-eAIEFAl 239 (393)
+|+..... - .+....+..++|++.+.+|.+..... .| .-.+ .-+-...+...|.+.+ ++..+.+
T Consensus 79 iviaCnta-~---~~~~l~~~~~iPvi~i~~~~~~~a~~-~~-~rig----Vlat~~t~~~~~~~~~~~~~g~~~ 143 (228)
T 2eq5_A 79 IIISCAAD-P---AVEKVRKLLSIPVIGAGSSVSALALA-YG-RRVG----VLNLTEETPKVIRSILGNNLIAED 143 (228)
T ss_dssp EEECSTTC-T---THHHHHHHCSSCEEEHHHHHHHHHHT-TC-SSEE----EECSSSCCCHHHHHHHGGGEEEEE
T ss_pred EEEeCCch-H---HHHHHHHhCCCCEeCccHHHHHHHHH-hC-CeEE----EEecCcccHHHHHHHHHHHhCccc
Confidence 66655444 2 23333345589999999999987653 44 2211 1111234446788888 7655444
No 221
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=48.09 E-value=9.9 Score=30.79 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..-|+++|.+++|||=|.-.|.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999998887754
No 222
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=47.98 E-value=8.2 Score=35.53 Aligned_cols=32 Identities=34% Similarity=0.266 Sum_probs=27.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
-|+|+|-+.+|||=|.-.|......|.|+|=+
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~ 36 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGV 36 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCe
Confidence 48999999999999998888666888998854
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.79 E-value=6.3 Score=35.06 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|.++||||=|.-.||+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998884
No 224
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.75 E-value=4.7 Score=32.89 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhccc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRKH 382 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~~ 382 (393)
.++++.+++ ||+++-++ +..|+|.-..|.+.+.++..
T Consensus 138 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 138 DGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 445666665 89998874 56789998888888765443
No 225
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=47.65 E-value=6.4 Score=36.51 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=23.5
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G~KVANvP 283 (393)
-++|.|.++||||=+.-.||+ .|....-+.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 599999999999999999994 454443333
No 226
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=47.22 E-value=7.7 Score=31.52 Aligned_cols=126 Identities=12% Similarity=0.133 Sum_probs=64.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC-CCCC-----Cc---ccccc--------------CCCcEEEEecC-
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM-GVEL-----PK---SLFQV--------------DPEKVFGLTIN- 308 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp-~v~l-----P~---~L~~i--------------~~~KI~GLTId- 308 (393)
--|+|+|-+.+|||=|.-.|.+..+...+.|-+. .... .. .|++. ..-.++=|.+|
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAA 88 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEEC
Confidence 3599999999999999988876544444433221 0000 00 01111 11113344443
Q ss_pred -----hhHHHHHHHHHHhhcCCC-----CCCCCCCCCHHHHHHHHHHHHHHhhhCCC--CcEEeCCC---ccHHHHHHHH
Q 016228 309 -----PLVLQSIRKARARSLGFR-----DEIRSNYSEMDYVREELEFAGRIFAQNPV--WPVIEVTG---KAIEETAAVV 373 (393)
Q Consensus 309 -----P~rL~~IR~eRl~~lGl~-----~~~~S~YAs~e~I~~EL~~A~~lf~k~~g--~pVIDVT~---kSIEEtAa~I 373 (393)
++.+..++..+. .+.+ .-.+-.-.+.+++.+++...+.+.+++ | ++++-++. ..|+|.-..|
T Consensus 89 ~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 89 DDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEW-GGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp TCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTT-TSSEEEEECCSSSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHc-CCcccEEEEecCCCCCHHHHHHHH
Confidence 444555543322 2210 000111124456666554444333332 4 68888754 5788888888
Q ss_pred HHHHhhcc
Q 016228 374 LRLYHDRK 381 (393)
Q Consensus 374 l~~~~~r~ 381 (393)
++.+...+
T Consensus 166 ~~~~~~~~ 173 (178)
T 2lkc_A 166 LLVSEMEE 173 (178)
T ss_dssp HHHHHHTT
T ss_pred HHhhhhhc
Confidence 88776544
No 227
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=47.11 E-value=13 Score=36.79 Aligned_cols=51 Identities=25% Similarity=0.132 Sum_probs=32.5
Q ss_pred CcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 224 LSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
+++.--.=.+++.+.++|.+--.-..-.--=|+|.|.++||||=+.-.+|+
T Consensus 139 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 333333334567777777654221011112489999999999999999995
No 228
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.07 E-value=6.6 Score=34.15 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.5
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA 273 (393)
.+.+-+ +.|+|.|++|||=|.--|+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 445555 5599999999999988887
No 229
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=46.84 E-value=21 Score=30.01 Aligned_cols=61 Identities=8% Similarity=-0.146 Sum_probs=37.7
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCc---cHHHHHHHHH
Q 016228 302 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGK---AIEETAAVVL 374 (393)
Q Consensus 302 I~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~k---SIEEtAa~Il 374 (393)
++.|..+++.|.+ |.+..+++. .-+.+.++. .+.-+.++ +. +..+||+|+. .+||++..|+
T Consensus 105 ~i~L~~~~e~l~~----R~~~r~~d~-----~ld~~~~~~-~~~~~~~~-~~-~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 105 FIILWTNREELLR----RDALRKKDE-----QMGERCLEL-VEEFESKG-ID-ERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp EEEEECCHHHHHH----HTTTSCC---------CGGGGHH-HHHHHHTT-CC-TTSEEECSSSCGGGHHHHHHHHH
T ss_pred EEEEeCCHHHHHH----HHHhccccc-----cCCHHHHHH-HHHHhhcC-CC-ccEEEeCCCCChhhHHHHHHHHh
Confidence 5778888886643 555444421 123333333 33333443 33 6789999999 9999999998
No 230
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.76 E-value=6.6 Score=36.10 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|.|+++||||-+.-.||+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999843
No 231
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=46.75 E-value=8.8 Score=39.05 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-|+|.|.++||||=+.-.+|+.
T Consensus 240 ~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999999953
No 232
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=46.59 E-value=8.1 Score=34.76 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|++-|++++|||=++-.|+ .+|++|.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 8899999999999998887 3577764
No 233
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=46.50 E-value=7.9 Score=36.13 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=21.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
+|..-. ++|.|.+++|||-+++.||.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444 67889999999999999994
No 234
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=46.46 E-value=6.4 Score=31.85 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
--|+++|-+.+|||=|.-.|.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999998888543
No 235
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=46.40 E-value=4.6 Score=34.88 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
=|+|+|-+++|||-|...|+.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998883
No 236
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=46.17 E-value=6.9 Score=33.92 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceee
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVA 280 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~----~G~KVA 280 (393)
++..-. ++|+|.+++|||=+++.+|. .|.+|.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~ 55 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI 55 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 344443 57889999999999988762 455554
No 237
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=46.17 E-value=8.7 Score=34.13 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhhc--Ccee
Q 016228 255 IILSGVSRTGKTPLSIYLAQK--GYKV 279 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~--G~KV 279 (393)
|++-|++++|||=++-.||++ |+.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 789999999999999999954 6654
No 238
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=46.16 E-value=8.9 Score=37.31 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
++|+|.|++||+=|.+.|..+|++..
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~g~~lv 172 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKRGHRLV 172 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCcee
Confidence 89999999999999999999998754
No 239
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=46.07 E-value=22 Score=31.92 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhC--C-CEEEEEcC-------------------------CHHHHHHHHHHHHHcCCCEeecchHH
Q 016228 150 VEQLMVIIKQAAKD--G-AMLVYTLA-------------------------DPSMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 150 ~e~l~~ii~~a~~~--~-~iV~~Tlv-------------------------d~eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
.+.+.++|+.+.+. + .||+.|.. -.++.+.+++.|+++|+++||+...+
T Consensus 144 ~~~l~~li~~lr~~~p~a~Iilitp~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~n~~i~~~a~~~~v~~vD~~~~~ 220 (274)
T 3bzw_A 144 RGRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKNVQPDESYQNGCGEYIDAYVQAIKEAGNIWGIPVIDFNAVT 220 (274)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECCCCCCCEECSTTEEECCTTBCCTTSCCHHHHHHHHHHHHHHHTCCEECHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHcCCCEEcchhhh
Confidence 35677777777543 3 35555541 15688999999999999999987643
No 240
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=45.61 E-value=8.4 Score=30.64 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCc-eeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGY-KVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~-KVANvP 283 (393)
|+++|-+++|||=+.-.|.+... .+.++|
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~ 33 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVP 33 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCCC-------
T ss_pred EEEECCCCCCHHHHHHHHhCCCeeeccCCC
Confidence 79999999999999988885433 244443
No 241
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=45.55 E-value=8.3 Score=35.38 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=33.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhCC-CCcEEeCCCccHHHHHHH
Q 016228 299 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-----MDYVREELEFAGRIFAQNP-VWPVIEVTGKAIEETAAV 372 (393)
Q Consensus 299 ~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs-----~e~I~~EL~~A~~lf~k~~-g~pVIDVT~kSIEEtAa~ 372 (393)
|+.+|=|+++|+...+ |+ +. ..|-. .++|++-- .+++++.. .|-+||. ++++||+ +.
T Consensus 146 PDl~I~Ldv~~e~~~~----Ri---~r-----dr~E~~~~e~~~rv~~~y---~~la~~~~~~~~vIDa-~~sieeV-~~ 208 (223)
T 3ld9_A 146 PDITFIIDVDINESLS----RS---CK-----NGYEFADMEFYYRVRDGF---YDIAKKNPHRCHVITD-KSETYDI-DD 208 (223)
T ss_dssp CSEEEEEECC----------------------------CHHHHHHHHHHH---HHHHHHCTTTEEEEES-SCSSSCC-CH
T ss_pred CCeEEEEeCCHHHHHH----Hh---cc-----CccccchHHHHHHHHHHH---HHHHHHCCCCEEEEcC-CCCHHHH-HH
Confidence 5678999999998765 22 10 12322 23343322 23333321 5889996 5799999 99
Q ss_pred HHHHHhhc
Q 016228 373 VLRLYHDR 380 (393)
Q Consensus 373 Il~~~~~r 380 (393)
|.+.+.+.
T Consensus 209 I~~~l~~~ 216 (223)
T 3ld9_A 209 INFVHLEV 216 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888653
No 242
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.52 E-value=8.4 Score=39.06 Aligned_cols=56 Identities=32% Similarity=0.425 Sum_probs=41.0
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeecc
Q 016228 224 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANVP 283 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVANvP 283 (393)
+++.--.=.++|+|.++|-+ |..|. -=|+|.|+++||||=+.--+| ..|....++.
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~p----rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPP----KGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 44444445589999999876 55542 238999999999999999999 5576655543
No 243
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=45.51 E-value=7.9 Score=31.35 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=26.9
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
.++++..++ ||+++-|+ +..|+|.-..|.+.+..++
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 135 DAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHH-TCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 456666775 89999875 5679999988888776554
No 244
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=45.30 E-value=8.5 Score=30.80 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=25.8
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ ||+++-++ +..|+|.-..|.+.+.++
T Consensus 129 ~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 129 QGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHH-TCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445566665 89998874 567999998888877654
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=45.25 E-value=8.7 Score=38.70 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|+++|.+++|||-++.-|| ..|.||.
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 6788999999999988887 3466654
No 246
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=45.01 E-value=11 Score=33.71 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh---------hcC-ce--eeecc-ccC
Q 016228 255 IILSGVSRTGKTPLSIYLA---------QKG-YK--VANVP-IVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA---------~~G-~K--VANvP-LVp 286 (393)
+++.|..|||||=.++.++ .+| .+ ++|++ |..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~ 52 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI 52 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc
Confidence 5789999999999998864 245 33 58887 543
No 247
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=44.73 E-value=8.6 Score=35.57 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=22.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc----Cceeeec
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK----GYKVANV 282 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~----G~KVANv 282 (393)
-++|.|.++||||=+.-.+|+. |.++.-+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i 71 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3899999999999999888842 5655443
No 248
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=44.40 E-value=10 Score=34.76 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=17.9
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
.||+.++ +|...++.- ||+.|++++|||=++-.|++
T Consensus 12 ~~~~~~~----~~~m~~g~~---I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 12 LEAQTQG----PGSMARGKF---ITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp ---------------CCCCE---EEEECCC---CHHHHHHHHH
T ss_pred HHHHHhc----CccccCCeE---EEEECCCCCCHHHHHHHHHH
Confidence 4555442 444445543 99999999999999998884
No 249
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=44.37 E-value=4.2 Score=35.30 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=20.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA 273 (393)
||..-+ ++|.|.+++|||=+++-+|
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 555555 5778999999999999876
No 250
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=44.30 E-value=31 Score=28.99 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCCEeecchHH
Q 016228 175 SMAESAKKACELWGIPSTDVLGPI 198 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDll~p~ 198 (393)
++.+.+++.|++.|++++|+...+
T Consensus 163 ~~n~~~~~~a~~~~v~~iD~~~~~ 186 (216)
T 2q0q_A 163 ELARVYSALASFMKVPFFDAGSVI 186 (216)
T ss_dssp THHHHHHHHHHHHTCCEEEGGGTC
T ss_pred HHHHHHHHHHHHcCCcEEchhHhc
Confidence 467789999999999999986544
No 251
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=43.93 E-value=7.5 Score=35.13 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=22.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc--Cceee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK--GYKVA 280 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~--G~KVA 280 (393)
=|+|.|..++|||=++-.||++ |+.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3899999999999999999954 65554
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.78 E-value=8.6 Score=33.44 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
+.|+|.+++|||=|.--|+ ..++.+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~g~ 31 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAIGF 31 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCCCE
Confidence 6899999999999988888 445555443
No 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=43.60 E-value=6.1 Score=37.16 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cC
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KG 276 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G 276 (393)
|.|-|.|+||||=++-+|++ .|
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 77899999999999999995 56
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=43.44 E-value=8.7 Score=39.58 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=23.5
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ----KGYKVAN 281 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~----~G~KVAN 281 (393)
=|+++|..++|||=|+.-||. +|+||+=
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVll 134 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL 134 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 388999999999999988883 4888863
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=43.43 E-value=24 Score=29.89 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=13.5
Q ss_pred CccEEEEE-eCChHHHHHHHHHHHHccC
Q 016228 96 EGKSIYMV-SDGTGWTAEHAVNAALGQF 122 (393)
Q Consensus 96 ~~~~IfiV-SDsTGeTAe~l~~AaLaQF 122 (393)
.++.|.|. -+|+|-| ++++.+..+|
T Consensus 9 ~~~~I~l~G~~GsGKS--T~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKS--TQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHH--HHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHH--HHHHHHHHHH
Confidence 34444443 6888876 3555454444
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=43.24 E-value=11 Score=34.85 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|+++||||=|.--||.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999988883
No 257
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=43.17 E-value=8.4 Score=35.53 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-++|.|.+|||||=+.-.+++
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 258
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=43.09 E-value=8.6 Score=38.49 Aligned_cols=126 Identities=19% Similarity=0.244 Sum_probs=69.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC---C---CCCCc----ccccc---------------------CCCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM---G---VELPK----SLFQV---------------------DPEK 301 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp---~---v~lP~----~L~~i---------------------~~~K 301 (393)
++|.|||.+.+|||=|.--|+..--+++++|+.- . +..+. .+++. ..-.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 8999999999999988777775545788887532 0 11110 01110 1111
Q ss_pred --EEEEecC---hhHHHHHHHHHHhh---c-CCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCC---ccHHHH
Q 016228 302 --VFGLTIN---PLVLQSIRKARARS---L-GFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTG---KAIEET 369 (393)
Q Consensus 302 --I~GLTId---P~rL~~IR~eRl~~---l-Gl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~---kSIEEt 369 (393)
++=++++ .+.|..+.++|..- | ..+.----+=.|+... +.++...+.+++. |+++|-+|. ..|+|.
T Consensus 238 ~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~-g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 238 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALARE-GLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTT-TSCEEECCTTTCTTHHHH
T ss_pred hhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhc-CCeEEEEECCCccCHHHH
Confidence 2222332 34566777766531 1 1000000000122111 3445556666775 899998875 568999
Q ss_pred HHHHHHHHhhc
Q 016228 370 AAVVLRLYHDR 380 (393)
Q Consensus 370 Aa~Il~~~~~r 380 (393)
-..|.+.+...
T Consensus 316 ~~~i~~~l~~~ 326 (416)
T 1udx_A 316 KEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhc
Confidence 99999888654
No 259
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=42.69 E-value=8.4 Score=34.99 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|.++||||=|.-.||+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999988884
No 260
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=42.57 E-value=8.2 Score=32.00 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 244 GALPQNLQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 244 G~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
+...+++.+--|+++|-+++|||=|.-.|++.
T Consensus 13 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34445666778999999999999999998854
No 261
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.45 E-value=10 Score=38.47 Aligned_cols=47 Identities=30% Similarity=0.369 Sum_probs=34.2
Q ss_pred hhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 232 IEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 232 IeAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
.++|++-++|-+ |..+. -=|+|.|+++||||=+.--+| +.|....++
T Consensus 194 ~e~v~~pl~~pe~f~~~g~~~p----rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 194 VEAIVLPMKRADKFKDMGIRAP----KGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp HHHTHHHHHCSHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhCHHHHHhCCCCCC----CeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467888888765 44322 238999999999999999999 556554443
No 262
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=42.43 E-value=8.1 Score=30.68 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
.--|+++|-+++|||=|.-.|.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3459999999999999988888554
No 263
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=42.36 E-value=12 Score=34.22 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
-|-|.|-.+||||=.|-+|+.+|+.|-+-=
T Consensus 11 ~iglTGgigsGKStv~~~l~~~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAARGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCcEEECc
Confidence 489999999999999999999999887643
No 264
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.28 E-value=8.5 Score=36.03 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=27.5
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
++.+.++++. |. +. -++|.|.++||||-+...||+.
T Consensus 34 ~~~L~~~i~~--g~----~~--~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 34 ITTVRKFVDE--GK----LP--HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHT--TC----CC--CEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CC----Cc--eEEEECCCCCCHHHHHHHHHHH
Confidence 4567777775 32 22 3899999999999999999953
No 265
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=42.25 E-value=10 Score=33.58 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhh---cCceeeec
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQ---KGYKVANV 282 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~---~G~KVANv 282 (393)
.-=++++|-.++|||=++..||. .|+||+=+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vv 47 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 47 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 34578899999999999888874 48888643
No 266
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=42.15 E-value=7.5 Score=31.97 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=24.9
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ ||+++-++ +..|+|.-..|++.+..+
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 135 RGEKLALDY-GIKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHH-TCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 345566675 89999886 457888888888777544
No 267
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=41.94 E-value=28 Score=34.44 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=21.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~ 274 (393)
||..-+ ++|.|.+++|||-+++-+|.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 566666 56779999999999999984
No 268
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=41.68 E-value=10 Score=35.37 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.4
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceee
Q 016228 253 ADIILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
--|++.|..++|||=+++-|| ++|++|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 348999999999999977666 5799985
No 269
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=41.57 E-value=8.5 Score=35.30 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.0
Q ss_pred cEEEEccCCCCCChhhHHhhh-----cCceeee
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-----KGYKVAN 281 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-----~G~KVAN 281 (393)
=|++.|++++|||=++-.|++ .|++|.-
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 389999999999999988884 6766654
No 270
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=41.37 E-value=11 Score=31.50 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=21.7
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc-eeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGY-KVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~-KVANvP 283 (393)
-|+|||.+.+|||=|--.|+.... .+.++|
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~ 36 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIA 36 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSST
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeeCCC
Confidence 489999999999987777774332 344544
No 271
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=41.18 E-value=7.4 Score=38.27 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.3
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
-|.|||.+.+|||-|---|.+....++|||..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~ 34 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFA 34 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCc
Confidence 37899999999998877777655788999864
No 272
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=41.01 E-value=31 Score=33.42 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhCCC-EEEEEcC---------------CHHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016228 151 EQLMVIIKQAAKDGA-MLVYTLA---------------DPSMAESAKKACELWGIPSTDVLGPITEAI 202 (393)
Q Consensus 151 e~l~~ii~~a~~~~~-iV~~Tlv---------------d~eLr~~l~~~~~~~gi~~vDll~p~i~~L 202 (393)
+.+..+|+++.+.++ +|+.|.. ...+++.+++.|++.++++||+...+.+.+
T Consensus 256 ~~l~~ii~~lr~~~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~~v~~iDl~~~~~~~~ 323 (375)
T 2o14_A 256 EVMRDMIRQVKAKGADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEEKTYLIDLNVLSSAYF 323 (375)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence 346677777766663 5555543 235678899999999999999877765544
No 273
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=40.81 E-value=11 Score=34.82 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=22.7
Q ss_pred EEEEccCCCCCChhhHHhhhc-----Cceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-----GYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-----G~KVANvP 283 (393)
++|.|.+|||||=+.-.+++. ++.+.-+.
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 899999999999999988832 45555443
No 274
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=40.51 E-value=11 Score=36.66 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHh
Q 016228 194 VLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYL 272 (393)
Q Consensus 194 ll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eAD-IVLvGVSRTsKTPlSmYL 272 (393)
.|.-.+..|++.+|.......+..+ +.-....---+..++..+. ..||..-. ++|.|.+++|||-+++-|
T Consensus 13 ~l~~~~~~i~~~~~~~~~~~l~~~~---~~~~~~i~TG~~~LD~~Lg------~GGl~~G~ii~I~G~pGsGKTtLal~l 83 (356)
T 1u94_A 13 ALAAALGQIEKQFGKGSIMRLGEDR---SMDVETISTGSLSLDIALG------AGGLPMGRIVEIYGPESSGKTTLTLQV 83 (356)
T ss_dssp HHHHHHHHHHHHHCTTSSCCTTCCC---BCCCCEECCSCHHHHHHTS------SSSEETTSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCceEccccc---cccCCcccCCCHHHHHHhc------cCCccCCeEEEEECCCCCCHHHHHHHH
Confidence 4667788888888865421000000 0000001111334554442 13555555 577899999999999998
Q ss_pred hh----cCceeeeccc
Q 016228 273 AQ----KGYKVANVPI 284 (393)
Q Consensus 273 A~----~G~KVANvPL 284 (393)
|. .|.+|+=+-+
T Consensus 84 a~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 84 IAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHTTCCEEEEES
T ss_pred HHHHHHCCCeEEEEeC
Confidence 83 5777775544
No 275
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=40.49 E-value=9.1 Score=38.34 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=18.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
-|.|||.+.+|||=|---|......++|+|.+
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~t 55 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFC 55 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCcc
Confidence 49999999999998877777666799999965
No 276
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=40.36 E-value=12 Score=30.28 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
.-|+++|-+++|||=|.-.|.+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~ 35 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQ 35 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4699999999999999888875444433
No 277
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=39.78 E-value=9.8 Score=31.81 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.5
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-|+|||.|++|||=|.-.|+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999998887774
No 278
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=39.70 E-value=13 Score=32.09 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEcc-CCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGV-SRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGV-SRTsKTPlSmYLA----~~G~KVA 280 (393)
|.+.|- .++|||-+|+-|| ++|+||.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVl 34 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTA 34 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 344554 6899999887766 7899997
No 279
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=39.45 E-value=9.3 Score=30.63 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=25.2
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++...+ +++++-++ +..|+|.-..|.+.+..+
T Consensus 128 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 128 EGRACAVVF-DCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHT-TCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 345566665 89998775 567888888888877554
No 280
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=39.41 E-value=13 Score=30.05 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 250 LQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 250 L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
+.+.-|+++|-+.+|||=|.-.|.+.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999888744
No 281
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.09 E-value=14 Score=38.99 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..++|+|.++||||=+.-.||+.
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999965
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=38.96 E-value=13 Score=29.69 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
--|+++|-+++|||=|.-.|.+..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3589999999999999988885433
No 283
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=38.84 E-value=13 Score=33.94 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=26.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCccccccCCCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPKSLFQVDPEK 301 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp----~v~lP~~L~~i~~~K 301 (393)
|.|-|.++||||-++-.||. .||.+.+==++. +..++.+.|+-...+
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~~~~E~ 68 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEK 68 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC-------------
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 78899999999999999994 698876643332 445555555443333
No 284
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=38.83 E-value=10 Score=34.65 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=22.3
Q ss_pred CCcCc-EEEEccCCCCCChhhHHhh-----hcCceee
Q 016228 250 LQKAD-IILSGVSRTGKTPLSIYLA-----QKGYKVA 280 (393)
Q Consensus 250 L~eAD-IVLvGVSRTsKTPlSmYLA-----~~G~KVA 280 (393)
+..-+ ++|+|.+++|||=|+.-|| +.|.+|.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 33344 5689999999999998776 2375553
No 285
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=38.76 E-value=14 Score=29.67 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+++|-+++|||=|.-.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999998888754
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=38.71 E-value=13 Score=35.91 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|+|++|||=|.--||
T Consensus 132 i~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7799999999999887777
No 287
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=38.63 E-value=14 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
--|+++|-+.+|||=|.-.|.+.-+.....|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~ 34 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP 34 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC
Confidence 3589999999999999888875444333333
No 288
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=38.63 E-value=10 Score=37.73 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=20.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA 273 (393)
+|..-. +.|+|.|+||||-|++-||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 555444 5688999999999999776
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=38.59 E-value=21 Score=29.99 Aligned_cols=15 Identities=0% Similarity=-0.356 Sum_probs=11.0
Q ss_pred CcEEEEecChhHHHH
Q 016228 300 EKVFGLTINPLVLQS 314 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~ 314 (393)
..+|-|+.+++.+.+
T Consensus 114 ~~~v~L~~~~e~~~~ 128 (186)
T 2yvu_A 114 FLEIYVKASLEEVIR 128 (186)
T ss_dssp EEEEEEECCHHHHHH
T ss_pred eEEEEEeCCHHHHHH
Confidence 457888888887754
No 290
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=38.50 E-value=25 Score=34.66 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=46.9
Q ss_pred HHHHHHHHHHccCCCCcccCccceeEEEccCCccc--cCcCC-------HHHHHHHHHHHhhCCCEEEEEcCCHHHHHHH
Q 016228 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQF--CQIDD-------VEQLMVIIKQAAKDGAMLVYTLADPSMAESA 180 (393)
Q Consensus 110 TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~--~~V~t-------~e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l 180 (393)
-|+.+++.+...+|++ ++..++.-+.. -.+.+ .+.+.+++++ --+||-+.-+.+-|..+
T Consensus 89 Ka~aaa~~L~~inP~v--------~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~----~DlVvd~tDn~~tR~li 156 (340)
T 3rui_A 89 KAELAAASLKRIFPLM--------DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE----HDIIFLLVDSRESRWLP 156 (340)
T ss_dssp HHHHHHHHHHHHCTTC--------EEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHH----CSEEEECCSSTGGGHHH
T ss_pred HHHHHHHHHHHhCCCC--------EEEEEeccccccCcccchhhhhcCCHHHHHhhhcc----CCEEEecCCCHHHHHHH
Confidence 5777778777788874 33333210000 00222 2334444433 24999999999999999
Q ss_pred HHHHHHcCCCEeec
Q 016228 181 KKACELWGIPSTDV 194 (393)
Q Consensus 181 ~~~~~~~gi~~vDl 194 (393)
.+.|.++|+|+|+.
T Consensus 157 n~~c~~~~~plI~a 170 (340)
T 3rui_A 157 SLLSNIENKTVINA 170 (340)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHcCCcEEEe
Confidence 99999999999984
No 291
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=38.47 E-value=12 Score=32.97 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=22.6
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
.--|+|||.+++|||=|.-.|...-....+.|
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 34599999999999988877775545555555
No 292
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=38.39 E-value=11 Score=34.08 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|.|.++||||-+.-.+|+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999999954
No 293
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=38.30 E-value=14 Score=30.14 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=26.1
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++..++ |++++-++ +..|+|.-..|++.+.++
T Consensus 149 ~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 149 EARELAEKY-GIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp HHHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456667775 89999885 458899888888877554
No 294
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.27 E-value=13 Score=36.01 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHh
Q 016228 194 VLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYL 272 (393)
Q Consensus 194 ll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eAD-IVLvGVSRTsKTPlSmYL 272 (393)
.|.-.+..|++.+|..........+ +.-.+..---+..++..+. .-+|..-. ++|.|.++||||-+++-|
T Consensus 11 ~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~~~i~TG~~~LD~~Lg------~GGl~~G~iv~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 11 ALELAMAQIDKNFGKGSVMRLGEEV---RQPISVIPTGSISLDVALG------IGGLPRGRVIEIYGPESSGKTTVALHA 81 (349)
T ss_dssp HHHHHHHHHHHHHCTTSSCCTTCCC---CCCCCEECCSCHHHHHHTS------SSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCceeccccc---cccCCccccCCHHHHHHhc------cCCccCCeEEEEECCCCCCHHHHHHHH
Confidence 3566777888888765321000000 0000001111344555542 13565555 677899999999999998
Q ss_pred hh----cCceeeecc
Q 016228 273 AQ----KGYKVANVP 283 (393)
Q Consensus 273 A~----~G~KVANvP 283 (393)
|. .|.+|+=+-
T Consensus 82 a~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 82 VANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTTCCEEEEE
T ss_pred HHHHHhCCCeEEEEE
Confidence 82 466666443
No 295
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=38.06 E-value=8.5 Score=31.75 Aligned_cols=35 Identities=6% Similarity=-0.020 Sum_probs=26.0
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.+.++.+++ +|+++-++ +..|+|.=..|++.+...
T Consensus 142 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 142 EGLKFARKH-SMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHc-CCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 455667775 89999765 567888888888877554
No 296
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=38.04 E-value=11 Score=35.94 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
|.|+|+|++|||=|.--||
T Consensus 105 i~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6789999999999888777
No 297
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=37.94 E-value=12 Score=31.53 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=20.6
Q ss_pred ccCCCCCChhhHHhh----hcCceeeeccccC
Q 016228 259 GVSRTGKTPLSIYLA----QKGYKVANVPIVM 286 (393)
Q Consensus 259 GVSRTsKTPlSmYLA----~~G~KVANvPLVp 286 (393)
+-.++|||-+++.|| ++|+||.=+=+=|
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 456799999988776 6899987554433
No 298
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.91 E-value=28 Score=30.74 Aligned_cols=16 Identities=25% Similarity=0.111 Sum_probs=9.5
Q ss_pred eCChHHHHHHHHHHHHcc
Q 016228 104 SDGTGWTAEHAVNAALGQ 121 (393)
Q Consensus 104 SDsTGeTAe~l~~AaLaQ 121 (393)
-||.|-| ++++.+...
T Consensus 28 ~~GsGKS--Tl~~~L~~~ 43 (230)
T 2vp4_A 28 NIGSGKT--TYLNHFEKY 43 (230)
T ss_dssp STTSCHH--HHHHTTGGG
T ss_pred CCCCCHH--HHHHHHHhc
Confidence 5777876 456544433
No 299
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.90 E-value=13 Score=38.00 Aligned_cols=55 Identities=27% Similarity=0.369 Sum_probs=39.1
Q ss_pred CCcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 223 PLSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 223 ~ld~~YF~RIeAIEFAlkhDD-----G~~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
+|++.--.=.|+|+|-++|-+ |..+. -=|+|.|+++||||=+.--+| ..|....+
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p----rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGIKPP----KGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTCCCC----SEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 355555555688999888865 43321 238999999999999999999 45654443
No 300
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=37.83 E-value=13 Score=29.62 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=20.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
--|+++|-+++|||=|.-.|.+.-+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3589999999999999887774433
No 301
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=37.70 E-value=14 Score=33.96 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=23.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 286 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp 286 (393)
|.+.|-.++|||-++.-|| ++|+||.=|=+=|
T Consensus 44 I~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred EEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4555999999999887655 7899997554333
No 302
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=37.69 E-value=20 Score=30.17 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCC---CEEEEEcCC----H---------------HHHHHHHHHHHHc-CCCEeecchHHH
Q 016228 151 EQLMVIIKQAAKDG---AMLVYTLAD----P---------------SMAESAKKACELW-GIPSTDVLGPIT 199 (393)
Q Consensus 151 e~l~~ii~~a~~~~---~iV~~Tlvd----~---------------eLr~~l~~~~~~~-gi~~vDll~p~i 199 (393)
+.+..+++.+.+.+ .+|+.|+.. + ++.+.+++.|+++ |++++|+...+.
T Consensus 109 ~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~~iD~~~~~~ 180 (214)
T 2hsj_A 109 NNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASAYMQVEFVPVFDCLT 180 (214)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHHHTTCCHHHHHHHHHHHHHHHTTCTTEEEECCGGGSB
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCCcccccccccccccHHHHHHHHHHHHHHHHHcCCCEEEEhHHHHh
Confidence 45666676665443 366666542 1 6788999999999 999999987654
No 303
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=37.66 E-value=26 Score=34.51 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=39.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHH
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQS 314 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp--------~v~lP~~L~~i~~~KI~GLTIdP~rL~~ 314 (393)
++..|-.++|||-+|.-|| +.|+||.=+=. | ++++.....++. .-+.++.|||+...+
T Consensus 5 ~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v~-~~L~~~eid~~~~~~ 74 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQIA-PNLEVVQFQSSVLLE 74 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEEE-TTEEEEECCHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCccccc-ccccccccCHHHHHH
Confidence 4567888999999886655 78999976665 5 333333332332 358899999987655
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.48 E-value=12 Score=31.10 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=19.6
Q ss_pred CcEEeCCCccHHHHHHHHHHHH
Q 016228 356 WPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 356 ~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
.-+||++++++||++..|++.+
T Consensus 155 d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 155 DVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp SEEEETTSSCHHHHHHHHHTTC
T ss_pred cEEEECCCCCHHHHHHHHHHHh
Confidence 5689999999999999998765
No 305
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=37.43 E-value=13 Score=30.65 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhccc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRKH 382 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~~ 382 (393)
.++++.+++ +++++-++ +..|+|.-..|++.+..+..
T Consensus 143 ~~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 143 TAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHT-TCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 456677775 89999875 56799998888888876643
No 306
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=37.42 E-value=11 Score=33.78 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|.|.++||||-+...+|+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHH
Confidence 999999999999999999854
No 307
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=37.42 E-value=11 Score=34.81 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhhh----cCce
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYK 278 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~K 278 (393)
|++.|++++|||-++-.|++ .|++
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999883 4555
No 308
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=37.40 E-value=11 Score=35.69 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
|.|+|.|++|||-++--|+
T Consensus 34 i~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7799999999999998887
No 309
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=37.36 E-value=8.9 Score=32.42 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999998887775433
No 310
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=37.27 E-value=13 Score=31.41 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.-|+|||.+++|||=|.-.|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999998888743
No 311
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=37.26 E-value=37 Score=33.87 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=20.7
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhhh
Q 016228 249 NLQKADI-ILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 249 ~L~eADI-VLvGVSRTsKTPlSmYLA~ 274 (393)
||..-++ +|.|.+++|||=+++-+|.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555554 5679999999999999984
No 312
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=37.19 E-value=13 Score=31.19 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=21.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCce
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
--|+++|-+.+|||-|.-.|.+..+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~ 46 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFN 46 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 56999999999999999888854443
No 313
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=37.12 E-value=13 Score=30.98 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=25.3
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ +|+++-++ +..|+|.-..|++.+.++
T Consensus 148 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 148 EGEAFAREH-GLIFMETSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHH-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 455666675 89998874 567888888888776544
No 314
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.02 E-value=11 Score=33.98 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
++|.|.++||||=+...+|+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999999954
No 315
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=36.98 E-value=24 Score=33.35 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=22.0
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
-|+|+|-+.+|||=|.-.|.+..+ +.++|
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p 195 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTTIP 195 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEEEE
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCccc
Confidence 499999999999988888874432 44444
No 316
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=36.97 E-value=1.1e+02 Score=26.22 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=21.4
Q ss_pred HhhhCCCCcEEeCCCccHHHHHHHHHHHHhh
Q 016228 349 IFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 349 lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
.|++.-.+-+||. ++++||++..|++.+..
T Consensus 190 ~y~~~~~~~~id~-~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 190 FYKKTGIWAGVDA-SQPPATVWADILNKLGK 219 (220)
T ss_dssp HHHHHTCEEEEET-TSCHHHHHHHHHHHHTC
T ss_pred HHHhCCCEEEEEC-CCCHHHHHHHHHHHHhc
Confidence 4543213667785 58999999999998853
No 317
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=36.95 E-value=13 Score=39.50 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.7
Q ss_pred cEEeCCCccHHHHHHHHHHHHhhc
Q 016228 357 PVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 357 pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
-+||++++++||++..|++.+..+
T Consensus 200 lvIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 200 LVLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp EEEETTSSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999999999764
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=36.85 E-value=13 Score=29.95 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=25.2
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ +|+++-++ +..|+|.-..|++.+..+
T Consensus 131 ~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 131 EGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHT-TCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 455666775 89998775 557888888888777543
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=36.62 E-value=14 Score=29.05 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.-|+++|-+++|||=|.-.|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999888744
No 320
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=36.45 E-value=50 Score=26.87 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHH
Q 016228 334 SEMDYVREELEF 345 (393)
Q Consensus 334 As~e~I~~EL~~ 345 (393)
.+.+.+.+++..
T Consensus 148 ~~~~~~~~~i~~ 159 (168)
T 2pt5_A 148 KPPEEVVKEILL 159 (168)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 467777776643
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=36.36 E-value=8.1 Score=33.73 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANvPL 284 (393)
+.|+|.|++|||=|.--|+ ..|+++..|=+
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 6799999999999887776 34777665543
No 322
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=36.35 E-value=69 Score=25.61 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=47.3
Q ss_pred ccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEc----c-----CCccccCcCCHHHHHHHHHHHhhCCCEE
Q 016228 97 GKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLF----S-----GLQQFCQIDDVEQLMVIIKQAAKDGAML 167 (393)
Q Consensus 97 ~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~----p-----~~~~~~~V~t~e~l~~ii~~a~~~~~iV 167 (393)
.+.+.|| |+|..|..+++.+... ++ +++.-| + .+..+|.+. .+.+.+++++..- + .|
T Consensus 4 ~~~vlIi--GaG~~g~~l~~~l~~~-~g--------~~vvg~~d~~~~~~g~~i~g~pV~g-~~~l~~~~~~~~i-d-~v 69 (141)
T 3nkl_A 4 KKKVLIY--GAGSAGLQLANMLRQG-KE--------FHPIAFIDDDRKKHKTTMQGITIYR-PKYLERLIKKHCI-S-TV 69 (141)
T ss_dssp CEEEEEE--CCSHHHHHHHHHHHHS-SS--------EEEEEEECSCGGGTTCEETTEEEEC-GGGHHHHHHHHTC-C-EE
T ss_pred CCEEEEE--CCCHHHHHHHHHHHhC-CC--------cEEEEEEECCcccCCCEecCeEEEC-HHHHHHHHHHCCC-C-EE
Confidence 4566666 5688889999987653 22 111111 0 001112243 4566666654322 2 34
Q ss_pred EEEc--CCHHHHHHHHHHHHHcCCCEeec
Q 016228 168 VYTL--ADPSMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 168 ~~Tl--vd~eLr~~l~~~~~~~gi~~vDl 194 (393)
+-++ .+.+.++.+-+.|.++|+.+.-+
T Consensus 70 iia~~~~~~~~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 70 LLAVPSASQVQKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCeEEEC
Confidence 4444 35677788888999999987654
No 323
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.17 E-value=12 Score=35.46 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=17.1
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|||++++|||-|.--||
T Consensus 103 i~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6699999999999988777
No 324
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=35.89 E-value=16 Score=32.29 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016228 255 IILSGVSRTGKTPLSIYLA-QKGYKVAN 281 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA-~~G~KVAN 281 (393)
|.|.|.++||||-++--|| ..||..-+
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 7889999999999999999 56876654
No 325
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=35.76 E-value=9.5 Score=37.81 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=38.3
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcE
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKV 302 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI 302 (393)
.|+|.|||-.-+||+-|-=-|.+..-.|+|||.+---+.|..+ +++..++
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~-~~~~~~i 121 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI-RYKGAKI 121 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE-EETTEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE-EeCCcEE
Confidence 4899999999999999988888777999999988644444443 3343333
No 326
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.62 E-value=20 Score=38.55 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=29.4
Q ss_pred hhhhhhhhhhCCCCCCCCCCCc-CcEEEEccCCCCCChhhHHhhh
Q 016228 231 RIEAIEFTIKQDDGALPQNLQK-ADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 231 RIeAIEFAlkhDDG~~p~~L~e-ADIVLvGVSRTsKTPlSmYLA~ 274 (393)
=.+.+++.+.|.+--.--++.. --|+|+|.|+||||=+.-.||+
T Consensus 216 l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 216 IKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp HHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456777777765211111111 1389999999999999999995
No 327
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=35.59 E-value=12 Score=35.18 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=27.3
Q ss_pred hhhhhhhhhCC--CCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 232 IEAIEFTIKQD--DGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 232 IeAIEFAlkhD--DG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
++.+.++++.- .|..+ + -++|+|.++||||=|.-.+|+
T Consensus 34 ~~~l~~~i~~~~~~~~~~----~-~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 34 KKKLSLALEAAKMRGEVL----D-HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp HHHHHHHHHHHHHHTCCC----C-CEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC----C-eEEEECCCCCcHHHHHHHHHH
Confidence 56677777542 12221 2 389999999999999999994
No 328
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=35.52 E-value=1.3e+02 Score=25.95 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=57.5
Q ss_pred HHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCE-eecchH--HHHHHHHH--hCCCCCCCCCCCCCCC---C-CCc
Q 016228 157 IKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPS-TDVLGP--ITEAIASH--LGVSPSGLPRGAPGRN---F-PLS 225 (393)
Q Consensus 157 i~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~-vDll~p--~i~~Le~~--lG~~P~~~~~~~pG~~---~-~ld 225 (393)
++++.+.| .++++.....+.-+.+.+.|+++|+.+ ++++.| ..+.+... .|..=.. -.||.. . ...
T Consensus 70 ~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~---v~~g~~g~~~~~~~ 146 (211)
T 3f4w_A 70 SQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLA---VHTGTDQQAAGRKP 146 (211)
T ss_dssp HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEE---EECCHHHHHTTCCS
T ss_pred HHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEE---EcCCCcccccCCCC
Confidence 55555555 688888877555456667788888875 466554 22333332 3333110 012210 0 113
Q ss_pred HHHHhhhhhh--hhhhhCCCCCCCCCCC-----cCcEEEEc
Q 016228 226 EEYFRRIEAI--EFTIKQDDGALPQNLQ-----KADIILSG 259 (393)
Q Consensus 226 ~~YF~RIeAI--EFAlkhDDG~~p~~L~-----eADIVLvG 259 (393)
-++.+++... +.-+.-+-|.++.++. -||.|++|
T Consensus 147 ~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 147 IDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 4677777654 4556667788877763 48888888
No 329
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=35.37 E-value=15 Score=31.02 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=26.5
Q ss_pred HHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhh
Q 016228 344 EFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHD 379 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT~---kSIEEtAa~Il~~~~~ 379 (393)
+.|+.+..+. +|+++|++. ..++|.-..|.+.+.+
T Consensus 131 ~~a~~l~~~~-~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 131 DEARAFAEKN-NLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3478888885 999999864 5788888877776644
No 330
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.16 E-value=13 Score=38.22 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=34.8
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceee
Q 016228 224 LSEEYFRRIEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 224 ld~~YF~RIeAIEFAlkhDD-----G~-~p~~L~eADIVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
+++.--.=-|+|+|-++|-+ |. -|+| |+|.|+++||||=+.--+| ..|....
T Consensus 214 l~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprG-----ILLyGPPGTGKTlLAkAiA~e~~~~fi 272 (467)
T 4b4t_H 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKG-----ILLYGPPGTGKTLCARAVANRTDATFI 272 (467)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSE-----EEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCc-----eEeeCCCCCcHHHHHHHHHhccCCCeE
Confidence 33333333467777777755 43 2333 8899999999999999999 4455443
No 331
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=35.02 E-value=15 Score=30.09 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=26.8
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
.++++.+++ +|+++-++ +..|+|.-..|++.+.++.
T Consensus 137 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 137 EASRFAQEN-ELMFLETSALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 456667775 89999875 4578998888888776554
No 332
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=34.98 E-value=10 Score=32.31 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=25.0
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhccc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRKH 382 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~~ 382 (393)
.++++.+++ +|+++-++ +..|+|.=..|++.+..++.
T Consensus 152 ~~~~~a~~~-~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 152 EGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHT-TCEEEEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHh-CCEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344555664 78888774 56788888888887765543
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=34.90 E-value=13 Score=33.18 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ-KGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~-~G~ 277 (393)
|-|+|.+++|||=++-.|+. .|.
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHHHhch
Confidence 66999999999999999995 574
No 334
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=34.75 E-value=16 Score=30.38 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=25.8
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ |++++-++ +..|+|.-..|.+.+.++
T Consensus 149 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 149 DGRRLADDL-GFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456666775 89999875 557999988888877543
No 335
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.69 E-value=29 Score=32.65 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=40.7
Q ss_pred EEEEccCCCCCChhhHHh----hhcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHHHHHHHH
Q 016228 255 IILSGVSRTGKTPLSIYL----AQKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQSIRKARA 320 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYL----A~~G~KVANvPLVp--------~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl 320 (393)
+|.-|-.++|||-++.-| |++|+||.=+=+=| +.++.....++ ...+.++.+||+...+--.+++
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v-~~~l~~~~~d~~~~~~~~~~~~ 93 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKI-TENLYAVEIDPEVAMEEYQAKL 93 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEE-ETTEEEEECCHHHHHHHHHHHC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccC-CCCceeeccChHHHHHHHHHHH
Confidence 566688999999987554 57899996443333 33322222222 2347888999988765444443
No 336
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.60 E-value=14 Score=39.64 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|+|.++||||=+.-.||+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 3799999999999999999954
No 337
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=34.58 E-value=11 Score=32.54 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
|.+-|-.++|||=++.-|| ++|+||.=+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4557889999999887766 679998544
No 338
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=34.46 E-value=1.5e+02 Score=26.98 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=51.5
Q ss_pred HHHHHHHHccCCCCcccCccceeEEEccCCccccC-cCCHHHHHHHHHH----HhhCC--CEEEEEcCCHH-HHHHHHHH
Q 016228 112 EHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQ-IDDVEQLMVIIKQ----AAKDG--AMLVYTLADPS-MAESAKKA 183 (393)
Q Consensus 112 e~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~-V~t~e~l~~ii~~----a~~~~--~iV~~Tlvd~e-Lr~~l~~~ 183 (393)
-++.+++..++|+. ++..|.--.++|| ..+.+.+.+.+.+ +.+.| ++|+..-.... .-+.++
T Consensus 13 ltv~~~l~~~lP~~--------~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr-- 82 (255)
T 2jfz_A 13 FSVLKSLLKARLFD--------EIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQ-- 82 (255)
T ss_dssp HHHHHHHHHTTCCS--------EEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHH--
T ss_pred HHHHHHHHHHCCCC--------CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH--
Confidence 46777788889863 3333333345666 4667777666444 33334 67776554443 233444
Q ss_pred HHHcCCCEeecchHHHHHHHHH
Q 016228 184 CELWGIPSTDVLGPITEAIASH 205 (393)
Q Consensus 184 ~~~~gi~~vDll~p~i~~Le~~ 205 (393)
+..+||++.++.|.+......
T Consensus 83 -~~~~iPvigii~~av~~A~~~ 103 (255)
T 2jfz_A 83 -KYSKIPIVGVIEPSILAIKRQ 103 (255)
T ss_dssp -HHCSSCEECSSHHHHHHHHHH
T ss_pred -HhCCCCEEeeeHHHHHHHHHh
Confidence 345899999999988877655
No 339
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=34.08 E-value=16 Score=35.72 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 284 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA~----~G~KVANvPL 284 (393)
||..-+ ++|.|.+++|||-+++-||. .|.+|+=+-+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 454444 56679999999999999883 4677764443
No 340
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=34.08 E-value=53 Score=28.46 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCCEeecch
Q 016228 175 SMAESAKKACELWGIPSTDVLG 196 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDll~ 196 (393)
++.+.+++.|++.|+++||+..
T Consensus 177 ~~~~~~~~~a~~~~v~~iD~~~ 198 (232)
T 3dci_A 177 RLAPLYRKLAAELGHHFFDAGS 198 (232)
T ss_dssp THHHHHHHHHHHHTCEEEEGGG
T ss_pred HHHHHHHHHHHHhCCeEEcchH
Confidence 5788999999999999999753
No 341
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=34.05 E-value=1.8e+02 Score=27.12 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=58.8
Q ss_pred ccEEEEE-eCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccC-cCCHHHHHHHHHH----HhhCC--CEEE
Q 016228 97 GKSIYMV-SDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQ-IDDVEQLMVIIKQ----AAKDG--AMLV 168 (393)
Q Consensus 97 ~~~IfiV-SDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~-V~t~e~l~~ii~~----a~~~~--~iV~ 168 (393)
.+.|=|+ |---| -.+.+.+..++|+.. +..|.-..++|| ..+.+++.+.+.+ +.+.| ++|+
T Consensus 24 ~~~IGvfDsG~Gg---ltv~~~i~~~~P~~~--------~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~d~IVI 92 (290)
T 2vvt_A 24 QEAIGLIDSGVGG---LTVLKEALKQLPNER--------LIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVI 92 (290)
T ss_dssp GSCEEEEESSSTT---HHHHHHHHHHCTTSC--------EEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred CCcEEEEeCCCcH---HHHHHHHHHHCCCcc--------EEEecccccCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 3568888 64444 457888888888631 222233345666 5777777666443 33444 5666
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhC
Q 016228 169 YTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLG 207 (393)
Q Consensus 169 ~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG 207 (393)
..-..... .+...-+..+||++.++.|.+.......+
T Consensus 93 ACNTas~~--~l~~lr~~~~iPVigiiepa~~~A~~~~~ 129 (290)
T 2vvt_A 93 ACNTATAV--ALEEIKAALPIPVVGVILPGARAAVKVTK 129 (290)
T ss_dssp CCHHHHHH--HHHHHHHHCSSCEEESSHHHHHHHHHHCS
T ss_pred eCcchhHH--HHHHHHHhCCCCEEcccHHHHHHHHHhcC
Confidence 55444322 23333344589999999999988766443
No 342
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=33.92 E-value=14 Score=33.65 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.5
Q ss_pred CCcCc-EEEEccCCCCCChhhHHhh
Q 016228 250 LQKAD-IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 250 L~eAD-IVLvGVSRTsKTPlSmYLA 273 (393)
|..-+ ++|+|.++||||=|.+-||
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 44444 5789999999999998887
No 343
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=33.66 E-value=1.3e+02 Score=28.48 Aligned_cols=84 Identities=7% Similarity=0.050 Sum_probs=54.6
Q ss_pred HHHHHHHHHccCCCCcccCccceeEEEccCCccccC-cCCHHHHHHHHHHH----hhCC--CEEEEEcCCHHH-HHHHHH
Q 016228 111 AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQ-IDDVEQLMVIIKQA----AKDG--AMLVYTLADPSM-AESAKK 182 (393)
Q Consensus 111 Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~-V~t~e~l~~ii~~a----~~~~--~iV~~Tlvd~eL-r~~l~~ 182 (393)
.-+++++++.++|+. ++..|---.++|| -++.+++.+.+.++ .+.| .+|+..-....+ -+.|++
T Consensus 36 GLtv~~~i~~~lP~e--------~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~ 107 (274)
T 3uhf_A 36 GLSVLKSLYEARLFD--------EIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRA 107 (274)
T ss_dssp THHHHHHHHHTTCCS--------EEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHH
T ss_pred hHHHHHHHHHHCCCC--------CEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHH
Confidence 457899999999973 2333322334444 35788887775443 3445 577766544443 244444
Q ss_pred HHHHcCCCEeecchHHHHHHHHH
Q 016228 183 ACELWGIPSTDVLGPITEAIASH 205 (393)
Q Consensus 183 ~~~~~gi~~vDll~p~i~~Le~~ 205 (393)
..+||++.+++|.+......
T Consensus 108 ---~~~iPvigiiepa~~~a~~~ 127 (274)
T 3uhf_A 108 ---KAHFPVYGVIDAGVEATIKA 127 (274)
T ss_dssp ---HCSSCEECSHHHHHHHHHHH
T ss_pred ---hcCCCEEcCCHHHHHHHHHh
Confidence 34799999999999998877
No 344
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=33.55 E-value=18 Score=34.44 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=26.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
--|+|+|.+++|||=|.--|+..-..+.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~ 200 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT 200 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCe
Confidence 459999999999999888888655667777654
No 345
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=33.52 E-value=21 Score=36.80 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.3
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
++.+.+++... .-++|+|.++||||=+.-.||+.
T Consensus 50 l~~l~~~i~~g----------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 50 VEVIKTAANQK----------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred HhhccccccCC----------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 47788888754 15999999999999999999953
No 346
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=33.42 E-value=14 Score=36.24 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=17.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|.|||++++|||-|.--||.
T Consensus 160 i~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHh
Confidence 66999999999999887873
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=33.12 E-value=17 Score=30.07 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=21.9
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCce
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
.--|+++|.+++|||=|.-.|.+..+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~ 74 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVR 74 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346999999999999998888865443
No 348
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=33.07 E-value=17 Score=30.91 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=21.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCce
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
--|+|+|.+++|||=|.-.|.+..+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45999999999999999888865443
No 349
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=32.88 E-value=1.5e+02 Score=23.28 Aligned_cols=59 Identities=7% Similarity=0.142 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhCCCEEEEEcC-----CHHHHHHHHHHHHHcCCCE--eecc--hHHHHHHHHHhCCCC
Q 016228 152 QLMVIIKQAAKDGAMLVYTLA-----DPSMAESAKKACELWGIPS--TDVL--GPITEAIASHLGVSP 210 (393)
Q Consensus 152 ~l~~ii~~a~~~~~iV~~Tlv-----d~eLr~~l~~~~~~~gi~~--vDll--~p~i~~Le~~lG~~P 210 (393)
++.+.++++.+++.+|+||-. .=-....+++.-.++||++ +|+. ......|.+.+|..-
T Consensus 6 ~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 6 QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPT 73 (109)
T ss_dssp HHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCC
Confidence 455667777778899999986 3334556666667777776 4554 355677888888643
No 350
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=32.85 E-value=17 Score=30.69 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ |++++-++ +..|+|.-..|++.+.++
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 135 VAKEFADAN-KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHT-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 455566675 89999875 558999998888877543
No 351
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=32.78 E-value=1.7e+02 Score=25.44 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.2
Q ss_pred CCcEEeCCCccHHHHHHHHHHHH
Q 016228 355 VWPVIEVTGKAIEETAAVVLRLY 377 (393)
Q Consensus 355 g~pVIDVT~kSIEEtAa~Il~~~ 377 (393)
.|-+||. ++++||+...|++.+
T Consensus 201 ~~~~ida-~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 201 VYIELDG-EGSIDSIKDTLLAQL 222 (223)
T ss_dssp EEEEEET-TSCHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCHHHHHHHHHHHh
Confidence 4789997 689999999999876
No 352
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=32.74 E-value=18 Score=35.53 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=40.2
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCC-C-CCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHH
Q 016228 195 LGPITEAIASHLGVSPSGLPRGAPG-R-NFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIY 271 (393)
Q Consensus 195 l~p~i~~Le~~lG~~P~~~~~~~pG-~-~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eAD-IVLvGVSRTsKTPlSmY 271 (393)
|...+..|++.+|............ . ...+. --+..++.++. ..||..-. +.|.|.+++|||-|++-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~----TG~~~LD~~Lg------~GGi~~G~i~~I~GppGsGKSTLal~ 80 (356)
T 3hr8_A 11 LEKALKRIEENFGKGSIMILGDETQVQPVEVIP----TGSLAIDIATG------VGGYPRGRIVEIFGQESSGKTTLALH 80 (356)
T ss_dssp HHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEEC----CSCHHHHHHTS------SSSEETTEEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCceechhccccCCCceec----CCCHHHHHHhc------cCCccCCcEEEEECCCCCCHHHHHHH
Confidence 6778899999999764211000000 0 00111 11345555553 13555444 45679999999999999
Q ss_pred hh
Q 016228 272 LA 273 (393)
Q Consensus 272 LA 273 (393)
||
T Consensus 81 la 82 (356)
T 3hr8_A 81 AI 82 (356)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 353
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=32.62 E-value=15 Score=33.98 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|.|.++||||-+.-.+|+
T Consensus 41 ~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 354
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=32.45 E-value=16 Score=36.41 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=27.3
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc-eeeecccc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQKGY-KVANVPIV 285 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~G~-KVANvPLV 285 (393)
-+.|||.+.+|||-|---|..... .++|+|.+
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~t 54 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA 54 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCce
Confidence 488999999999988877886666 89999965
No 355
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=32.27 E-value=18 Score=30.25 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999998888875443
No 356
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=32.25 E-value=12 Score=38.55 Aligned_cols=25 Identities=16% Similarity=0.148 Sum_probs=21.8
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhhc
Q 016228 356 WPVIEVTGKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 356 ~pVIDVT~kSIEEtAa~Il~~~~~r 380 (393)
--+||+++.++||++..|++.+..+
T Consensus 482 dI~IDTs~~s~eevV~~Il~~L~~~ 506 (511)
T 1g8f_A 482 DIQLESADEPISHIVQKVVLFLEDN 506 (511)
T ss_dssp SEECSSTTCCHHHHHHHHHHHHHHT
T ss_pred cEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999653
No 357
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=32.21 E-value=30 Score=28.65 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=24.8
Q ss_pred HHHHHHhhhCCCCcEEeCCCcc----HHHHHHHHHHHHhhc
Q 016228 344 EFAGRIFAQNPVWPVIEVTGKA----IEETAAVVLRLYHDR 380 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT~kS----IEEtAa~Il~~~~~r 380 (393)
+.++++.+++ ||+++-++.+. |+|.-..|++.+.++
T Consensus 154 ~~~~~~~~~~-~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 154 DMAQDWATTN-TLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp HHHHHHHHHT-TCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 4677788885 89999887554 888888877766443
No 358
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=32.19 E-value=23 Score=31.61 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.7
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|.--|+
T Consensus 25 ~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEECCTTSSTTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5699999999999887777
No 359
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=32.12 E-value=18 Score=36.92 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+|+|.++||||=+.-.+|+
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999994
No 360
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=32.07 E-value=20 Score=29.76 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+|+|-+.+|||=|.-.|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999988888744
No 361
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=31.87 E-value=15 Score=35.32 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=20.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016228 249 NLQKAD-IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 249 ~L~eAD-IVLvGVSRTsKTPlSmYLA 273 (393)
++..-. +.|+|.++||||=|++-||
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444444 5589999999999999988
No 362
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=31.74 E-value=1.8e+02 Score=26.73 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=56.8
Q ss_pred ccEEEEE-eCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccC-cCCHHHHHHHHHH----HhhCC--CEEE
Q 016228 97 GKSIYMV-SDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQ-IDDVEQLMVIIKQ----AAKDG--AMLV 168 (393)
Q Consensus 97 ~~~IfiV-SDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~-V~t~e~l~~ii~~----a~~~~--~iV~ 168 (393)
.+.|=|+ |---| -.+.+.+..++|+.+ +..|---.++|| .++.+.+.+.+.+ +.+.| ++|+
T Consensus 12 ~~~IGv~DsG~Gg---ltv~~~i~~~~P~~~--------~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~ivi 80 (273)
T 2oho_A 12 TRPIGFLDSGVGG---LTVVCELIRQLPHEK--------IVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVF 80 (273)
T ss_dssp CCCEEEEESSSTT---HHHHHHHHHHCTTCC--------EEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred CCcEEEEeCCCcH---HHHHHHHHHHCCCCC--------EEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 3567777 64445 457888888888632 222222234454 3667777665443 34445 5666
Q ss_pred EEcCCHHH-HHHHHHHHHHcCCCEeecchHHHHHHHHHhC
Q 016228 169 YTLADPSM-AESAKKACELWGIPSTDVLGPITEAIASHLG 207 (393)
Q Consensus 169 ~Tlvd~eL-r~~l~~~~~~~gi~~vDll~p~i~~Le~~lG 207 (393)
..-..... .+.+++ ..+||++.++.|.+.......+
T Consensus 81 aCNTas~~~l~~lr~---~~~iPvigi~epa~~~A~~~~~ 117 (273)
T 2oho_A 81 ACNTATAVAWEEVKA---ALDIPVLGVVLPGASAAIKSTT 117 (273)
T ss_dssp CCHHHHHHHHHHHHH---HCSSCEEESHHHHHHHHHHHCS
T ss_pred eCchHhHHHHHHHHH---hCCCCEEeccHHHHHHHHHhcC
Confidence 44444333 344443 4579999999998888765543
No 363
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=31.62 E-value=17 Score=29.75 Aligned_cols=37 Identities=32% Similarity=0.360 Sum_probs=27.8
Q ss_pred HHHHHHhhhCCCC-cEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 344 EFAGRIFAQNPVW-PVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 344 ~~A~~lf~k~~g~-pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
+.++++++++ +| +++-++ +..|+|.-..|.+.+.++.
T Consensus 154 ~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 154 EMVRAVVDPE-GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHHHHHHCTT-CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 4566777785 89 999885 5669998888888776554
No 364
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=31.59 E-value=20 Score=29.07 Aligned_cols=34 Identities=6% Similarity=-0.069 Sum_probs=24.8
Q ss_pred HHHHHhhhCCCC-cEEeCC---CccHHHHHHHHHHHHhh
Q 016228 345 FAGRIFAQNPVW-PVIEVT---GKAIEETAAVVLRLYHD 379 (393)
Q Consensus 345 ~A~~lf~k~~g~-pVIDVT---~kSIEEtAa~Il~~~~~ 379 (393)
.+.++.+++ |+ +++-++ +..|+|.-..|++.+.+
T Consensus 143 ~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 143 QGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhc-CCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 456666675 76 898875 55799998888887743
No 365
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=31.57 E-value=17 Score=28.98 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=18.2
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|+++|-+++|||=|.-.|.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999888874
No 366
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=31.45 E-value=19 Score=30.46 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=22.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 283 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVANvP 283 (393)
--|+|+|-+.+|||=|...|.+.. ...++|
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~ 37 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQT 37 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccC
Confidence 349999999999999988888543 344444
No 367
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=31.44 E-value=20 Score=30.47 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=26.1
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 344 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
+.++++.+++ +|+++-++ +..|+|.-..|++.+.++
T Consensus 162 ~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 162 RQARELADKY-GIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHHHT-TCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3556677775 89998875 556888888888776543
No 368
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.96 E-value=15 Score=33.98 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|.|.++||||=+...||+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998886
No 369
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=30.86 E-value=53 Score=31.39 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=47.2
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccccC--------CCCCCccccccC-C
Q 016228 233 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM--------GVELPKSLFQVD-P 299 (393)
Q Consensus 233 eAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp--------~v~lP~~L~~i~-~ 299 (393)
..++|.+....++.. +|.-|-.++|||-++.-|| ++|+||.=+=+=| +.++.....++. -
T Consensus 14 t~~~~~~~~~~~~~i-------~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v~g~ 86 (349)
T 3ug7_A 14 GITEKKLEKKDGTKY-------IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGY 86 (349)
T ss_dssp HHHHHHHHSSCSCEE-------EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEECTTC
T ss_pred hhHHHhhcccCCCEE-------EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCccccccc
Confidence 356676654433221 5667899999999876554 6799995333222 333333222222 1
Q ss_pred CcEEEEecChhHHHHHHHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARA 320 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl 320 (393)
..+....+|++...+--.++.
T Consensus 87 ~~l~~~~id~~~~~~~~~~~~ 107 (349)
T 3ug7_A 87 DNLYVVEIDPQKAMEEYKEKL 107 (349)
T ss_dssp SSEEEEECCHHHHHHHHHHHH
T ss_pred cceeeeccCHHHHHHHHHHHH
Confidence 347788999987665443343
No 370
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=30.74 E-value=19 Score=29.11 Aligned_cols=35 Identities=14% Similarity=-0.054 Sum_probs=25.6
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
.++++.+++ ||+++-++ +..|+|.-..|.+.+.+.
T Consensus 137 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 137 KHLRFCQEN-GFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHH-TCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 455666775 89999875 557889888888777543
No 371
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=30.70 E-value=15 Score=36.44 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
=|||+|.+++|||=++--||.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999994
No 372
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=30.68 E-value=18 Score=30.43 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCce
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYK 278 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~K 278 (393)
--|+++|-+.+|||=|.-.|.+..+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~ 52 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFC 52 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45999999999999999888854443
No 373
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=30.68 E-value=17 Score=37.08 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|||+|.+++|||=++--||.
T Consensus 38 IvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 374
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=30.65 E-value=20 Score=29.19 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCc
Q 016228 249 NLQKADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 249 ~L~eADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
+..+--|+|+|-+++|||=|.-.|.+..+
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34456699999999999998888885444
No 375
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=30.54 E-value=68 Score=32.36 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=35.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS 322 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~ 322 (393)
++++|..+||||=+.++.+.+=++. -.+++.+|..||-+-.--.++++ |+..
T Consensus 25 ~lV~a~aGsGKT~~l~~ri~~l~~~---------------~~~~~~~iL~ltft~~aa~e~~~-rl~~ 76 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRIAWLMSV---------------ENCSPYSIMAVTFTNKAAAEMRH-RIGQ 76 (647)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT---------------SCCCGGGEEEEESSHHHHHHHHH-HHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHh---------------CCCChhhEEEEeccHHHHHHHHH-HHHH
Confidence 8999999999999887644210100 01245678888888888888875 5543
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=30.52 E-value=35 Score=28.45 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEeCCCccHHHHHHHHHHHHhh
Q 016228 357 PVIEVTGKAIEETAAVVLRLYHD 379 (393)
Q Consensus 357 pVIDVT~kSIEEtAa~Il~~~~~ 379 (393)
-+||++++++||++..|++.+..
T Consensus 153 ~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 153 LVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp EEEETTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999865
No 377
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=30.50 E-value=1.5e+02 Score=23.94 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCEEEEEcCC-----HHHHHHHHHHHHHcCCC-----Eeecch--HHHHHHHHHhCCCC
Q 016228 152 QLMVIIKQAAKDGAMLVYTLAD-----PSMAESAKKACELWGIP-----STDVLG--PITEAIASHLGVSP 210 (393)
Q Consensus 152 ~l~~ii~~a~~~~~iV~~Tlvd-----~eLr~~l~~~~~~~gi~-----~vDll~--p~i~~Le~~lG~~P 210 (393)
++.+.|+++.+.+.+|+||-.. =-....+++...++||+ .+|+.. .+.+.|.+.+|..-
T Consensus 4 ~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~t 74 (121)
T 3gx8_A 4 EIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPT 74 (121)
T ss_dssp HHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCC
Confidence 3556677777788899999863 23556666666777887 367653 35677777788653
No 378
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=30.44 E-value=32 Score=29.70 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhC--C-CEEEEEcCC------------HHHHHHHHH-HHHHcCCCEeecchHHH
Q 016228 151 EQLMVIIKQAAKD--G-AMLVYTLAD------------PSMAESAKK-ACELWGIPSTDVLGPIT 199 (393)
Q Consensus 151 e~l~~ii~~a~~~--~-~iV~~Tlvd------------~eLr~~l~~-~~~~~gi~~vDll~p~i 199 (393)
+.+.++|+.+.+. + .+|+.|+.. .++.+.+++ .|++.|++++|+...+.
T Consensus 115 ~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~a~~~~v~~iD~~~~~~ 179 (232)
T 1es9_A 115 GGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFV 179 (232)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHHHSCTTEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHCCCCeEEEecCCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCEEEeChHHhc
Confidence 4566677777553 2 377776642 245677787 88889999999987654
No 379
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=30.19 E-value=14 Score=31.47 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCC---CcE---------------------EeCCCccHHHHHHHHHHHHh
Q 016228 332 NYSEMDYVREELEFAGRIFAQNPV---WPV---------------------IEVTGKAIEETAAVVLRLYH 378 (393)
Q Consensus 332 ~YAs~e~I~~EL~~A~~lf~k~~g---~pV---------------------IDVT~kSIEEtAa~Il~~~~ 378 (393)
+|++-.-|..||..|-+...+. + +|| +|...++++|+|..|.+++.
T Consensus 84 ~y~~S~wc~~El~~~~~~~~~~-~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~ia~~l~~lvr 153 (154)
T 3h16_A 84 HFFKKEWPQKELDGLFQLESSG-RSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSVDEIVADLMAIIR 153 (154)
T ss_dssp HHHTTCCCHHHHHHHTCCCTTS-CCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSCHHHHHHHHHHHHC
T ss_pred chhcChHHHHHHHHHHHHHhcC-CCEEEEEEecCCHHHHhhCCccHHHHHhhhcCcccHHHHHHHHHHHhc
Confidence 3455556888988886543221 2 333 24567899999999999874
No 380
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=30.14 E-value=18 Score=30.42 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=19.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhhh
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
.+.-|+|||-+++|||=|.-+|.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999777765
No 381
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=30.01 E-value=24 Score=28.85 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 247 PQNLQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 247 p~~L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
+.+...--|+|+|-+.+|||=|.-.|.+.
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556677999999999999998888754
No 382
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=29.91 E-value=18 Score=29.31 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..-|+++|-+++|||=|.-.|.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999998777743
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=29.80 E-value=22 Score=29.66 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=20.6
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
..-|+|+|-+.+|||=|.-.|.+.-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3569999999999999888887543
No 384
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=29.69 E-value=23 Score=28.55 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=26.7
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
.++.+..++ +|+++-++ +..|+|.-..|++.+.++.
T Consensus 136 ~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 136 EASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHT-TCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 355666675 89999875 4579999999988876544
No 385
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=29.62 E-value=13 Score=32.83 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCc-cHH
Q 016228 332 NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGK-AIE 367 (393)
Q Consensus 332 ~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~k-SIE 367 (393)
.+++.+++...+.. -+.+ +++-|||=-|+ +.+
T Consensus 159 vv~Tpg~l~~~l~~---~l~~-~~~lVlDEah~~~~~ 191 (235)
T 3llm_A 159 MFCTVGVLLRKLEA---GIRG-ISHVIVDEIHERDIN 191 (235)
T ss_dssp EEEEHHHHHHHHHH---CCTT-CCEEEECCTTSCCHH
T ss_pred EEECHHHHHHHHHh---hhcC-CcEEEEECCccCCcc
Confidence 34666777665543 3666 48889998876 344
No 386
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=29.54 E-value=23 Score=36.00 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKV 279 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KV 279 (393)
-|+|.|+++||||=+.--|| ..|+..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 49999999999999999999 455433
No 387
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=29.54 E-value=1.9e+02 Score=22.13 Aligned_cols=58 Identities=10% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCEEEEEc-----CCHHHHHHHHHHHHHcCCC--Eeecch--HHHHHHHHHhCCC
Q 016228 152 QLMVIIKQAAKDGAMLVYTL-----ADPSMAESAKKACELWGIP--STDVLG--PITEAIASHLGVS 209 (393)
Q Consensus 152 ~l~~ii~~a~~~~~iV~~Tl-----vd~eLr~~l~~~~~~~gi~--~vDll~--p~i~~Le~~lG~~ 209 (393)
++.+-++++...+.+++||- -.=-....++....++||+ .+|+-. .+...|...+|..
T Consensus 5 ~~~~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 71 (105)
T 2yan_A 5 KLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP 71 (105)
T ss_dssp HHHHHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCC
Confidence 44555666656667888887 3323444555566666777 467753 3445677778864
No 388
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=29.46 E-value=19 Score=36.95 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-|+|.|+++||||=++-+||+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGG
T ss_pred eeEeecCchHHHHHHHHHHHHH
Confidence 6999999999999999999963
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=29.41 E-value=19 Score=31.73 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016228 255 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 283 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~----~G~KVANvP 283 (393)
+.|+|++++|||=|.--||. .|+.+..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~ 36 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCChHHHHHHHHHhhcccCCEEEcCEe
Confidence 67999999999998877773 365554443
No 390
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=29.21 E-value=25 Score=29.56 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=26.1
Q ss_pred HHHHHhhhCCC-CcEEeC---CCccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPV-WPVIEV---TGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g-~pVIDV---T~kSIEEtAa~Il~~~~~r~ 381 (393)
.++++.+++ + |+++-+ |+..|+|.=..|++.+.+++
T Consensus 143 ~~~~~~~~~-~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 143 RARKLSTDL-KRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHT-TTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc-CCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 456677775 5 888877 56788998888888765543
No 391
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.16 E-value=24 Score=35.29 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=30.0
Q ss_pred HhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCce
Q 016228 229 FRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYK 278 (393)
Q Consensus 229 F~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~-~G~K 278 (393)
......+.-+++.... --++|.|.++||||=+.-.+|+ .+..
T Consensus 35 ~~~~~~L~~~i~~~~~--------~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 35 LAAGKPLPRAIEAGHL--------HSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HSTTSHHHHHHHHTCC--------CEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HhchHHHHHHHHcCCC--------cEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3334566666765432 3489999999999999999994 3433
No 392
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=29.00 E-value=19 Score=34.67 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
+.|+|.|++|||=|..-|+.
T Consensus 129 vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhh
Confidence 67999999999999988883
No 393
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=28.68 E-value=22 Score=29.47 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 344 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
+.++.+.+++ ||+++.++ +..|+|.-..|++.+.++
T Consensus 151 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 151 EEARMFAENN-GLLFLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3456667775 89999875 557898888888776543
No 394
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=28.58 E-value=18 Score=32.81 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016228 255 IILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~ 275 (393)
|++-|++++|||=++-.|+++
T Consensus 8 i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999943
No 395
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=28.46 E-value=25 Score=31.81 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=22.4
Q ss_pred EEEEcc-CCCCCChhhHHhh----hcCceeeec
Q 016228 255 IILSGV-SRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 255 IVLvGV-SRTsKTPlSmYLA----~~G~KVANv 282 (393)
|.+.|- +.+|||=+|.-|+ ++|+||+=+
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 667777 7999999887665 789998754
No 396
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=28.46 E-value=22 Score=35.01 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=21.6
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceee
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVA 280 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVA 280 (393)
=++|+|.++||||=+.--|| ..+.++.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 37899999999999999999 3444443
No 397
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=27.87 E-value=24 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4699999999999999888875433
No 398
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=27.83 E-value=20 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.0
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-++|.|.++||||=|.-.+|+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998885
No 399
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=27.81 E-value=20 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
|.|+|.|++|||=|+--|+
T Consensus 93 vgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHH
Confidence 5589999999999998887
No 400
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=27.66 E-value=19 Score=33.44 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016228 175 SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 254 (393)
Q Consensus 175 eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eAD 254 (393)
.+.+.+.+.|++..-. +=..+++..|. +-| .+--+| +++++--++ | .|+ +--
T Consensus 9 ~~~~~i~~~~~~~~~~--~~w~~I~~~l~-yq~----------------~~~~~f--~~~l~~~~~---~-iPk---kn~ 60 (212)
T 1tue_A 9 NMSQWIRFRCSKIDEG--GDWRPIVQFLR-YQQ----------------IEFITF--LGALKSFLK---G-TPK---KNC 60 (212)
T ss_dssp CHHHHHHHHHHTSCSC--CCSHHHHHHHH-HTT----------------CCHHHH--HHHHHHHHH---T-CTT---CSE
T ss_pred CHHHHHHHHHHHccCC--CCHHHHHHHHH-HcC----------------cCHHHH--HHHHHHHHh---c-CCc---ccE
Confidence 4677888888764322 33455555554 222 333344 555554444 2 333 223
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceee
Q 016228 255 IILSGVSRTGKTPLSIYLAQK-GYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~-G~KVA 280 (393)
+++.|..+||||=+++=||+. +-|+.
T Consensus 61 ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 999999999999999999943 44553
No 401
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=27.64 E-value=98 Score=28.99 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=10.3
Q ss_pred CCCCcHHHHhhhhhhhhhhh
Q 016228 221 NFPLSEEYFRRIEAIEFTIK 240 (393)
Q Consensus 221 ~~~ld~~YF~RIeAIEFAlk 240 (393)
...++...-.-++|+++...
T Consensus 136 k~G~~~t~~e~~~Av~~i~~ 155 (262)
T 1zco_A 136 KRGMGNTIQELLYSAEYIMA 155 (262)
T ss_dssp ECCTTCCHHHHHHHHHHHHT
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 34444344455566666544
No 402
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=27.62 E-value=24 Score=29.69 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKG 276 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G 276 (393)
.--|+|+|-+.+|||=|.-.|.+.-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3569999999999999998887543
No 403
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=27.55 E-value=19 Score=33.33 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHHHHhhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHH--HHHHHHHhCCCCCC----CCCCCCCCCCCCc--
Q 016228 156 IIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPI--TEAIASHLGVSPSG----LPRGAPGRNFPLS-- 225 (393)
Q Consensus 156 ii~~a~~~~--~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~--i~~Le~~lG~~P~~----~~~~~pG~~~~ld-- 225 (393)
.++.+.+.| +++++-+...++. .+.+.|+++|+..+.++.|- .+.++.......-- ...+..|....+.
T Consensus 114 ~~~~~~~aGadgii~~d~~~e~~~-~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~ 192 (268)
T 1qop_A 114 FYARCEQVGVDSVLVADVPVEESA-PFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALP 192 (268)
T ss_dssp HHHHHHHHTCCEEEETTCCGGGCH-HHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--C
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHH-HHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCch
Confidence 344443333 5777766655544 45567889999888888874 23333322211100 0001233222232
Q ss_pred -HHHHhhhhhh-hhhhhCCCCCC-CCCCCc-----CcEEEEcc
Q 016228 226 -EEYFRRIEAI-EFTIKQDDGAL-PQNLQK-----ADIILSGV 260 (393)
Q Consensus 226 -~~YF~RIeAI-EFAlkhDDG~~-p~~L~e-----ADIVLvGV 260 (393)
.++.+++... +.-|..+=|.+ ++++.+ ||.|+||=
T Consensus 193 ~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 4677777653 34466678887 665544 99999993
No 404
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=27.50 E-value=23 Score=30.47 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+|+|-+.+|||=|.-.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999998888743
No 405
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=27.48 E-value=46 Score=27.10 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.7
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
...-|+|+|-+++|||=|.-.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457999999999999888877744
No 406
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=27.46 E-value=22 Score=32.80 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceeeecccc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV 285 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~-~G~KVANvPLV 285 (393)
--++++|.+.+|||-+---|.. +-.++.++|=+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~ 133 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGI 133 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCC
Confidence 4699999999999988777774 33467776643
No 407
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=27.43 E-value=20 Score=32.30 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCc
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGY 277 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~ 277 (393)
|++-|++++|||=++-.|+ .+|+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 8999999999999888877 3577
No 408
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=27.10 E-value=32 Score=29.04 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=26.5
Q ss_pred HHHHHHHhhhCCCC-cEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 343 LEFAGRIFAQNPVW-PVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 343 L~~A~~lf~k~~g~-pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
.+.++++.+++ |+ +++-++ +..|+|.-..|++.+.++.
T Consensus 141 ~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 141 STQGEELRKQI-GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHc-CCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 34566677775 75 888875 4579999888888775543
No 409
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=27.03 E-value=25 Score=30.36 Aligned_cols=36 Identities=6% Similarity=0.061 Sum_probs=26.7
Q ss_pred HHHHHhhhCCCCcEEeC---CCccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEV---TGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDV---T~kSIEEtAa~Il~~~~~r~ 381 (393)
.++++.+++ +|+++-+ |+..|+|.-..|++.+.++.
T Consensus 140 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 140 ESKTFAQEN-QLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHT-TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 456667775 8999987 45679999999988876543
No 410
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=26.96 E-value=55 Score=29.69 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCCCCCCcCcEEEEc--cCCCCCChhhHHhh-hcCceeeeccccCCC
Q 016228 245 ALPQNLQKADIILSG--VSRTGKTPLSIYLA-QKGYKVANVPIVMGV 288 (393)
Q Consensus 245 ~~p~~L~eADIVLvG--VSRTsKTPlSmYLA-~~G~KVANvPLVp~v 288 (393)
.....++..++-+|| |=|+....+|+-.| ..|+++|=+||=.-+
T Consensus 112 ~~L~~~~~~~vYIIGGiVD~n~~K~lt~~~A~~~gi~taRLPi~~~i 158 (197)
T 4fmw_A 112 NILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFV 158 (197)
T ss_dssp CBCCSCCTTSEEEEECCCCTTSSTTHHHHHHHHHTCEEEBCCCTTTC
T ss_pred hhhhccCCCCEEEEEEEEeCCCCcchhHHHHHHcCCCEEecccccee
Confidence 344568888999999 77888899999999 789999999995544
No 411
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=26.88 E-value=27 Score=27.72 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+++|-+.+|||=|.-.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999988888753
No 412
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=26.74 E-value=67 Score=26.38 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHhhC-C-CEEEEE-cCCHHHHHHHHHHHHHcCCCEe
Q 016228 147 IDDVEQLMVIIKQAAKD-G-AMLVYT-LADPSMAESAKKACELWGIPST 192 (393)
Q Consensus 147 V~t~e~l~~ii~~a~~~-~-~iV~~T-lvd~eLr~~l~~~~~~~gi~~v 192 (393)
|.+.+++.+.+++..++ + ++|+-| -+-..+++.+.+.-.....|.|
T Consensus 28 v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 28 ASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVL 76 (109)
T ss_dssp CSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTCCCCCEE
T ss_pred eCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhCCCCeEE
Confidence 67899999999887544 4 777765 2334666666666434445544
No 413
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=26.57 E-value=88 Score=30.16 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=49.3
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 98 ~~IfiVSDsTGe-TAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
+.+|+--+..|. -|+.+++.+..-.|++ .++.+... +++ ...+++. .--+|+-+.-+.+.
T Consensus 78 rq~~~~~~diG~~Ka~~~~~~l~~lnp~v------~v~~~~~~-------~~~--~~~~~~~----~~dvVv~~~d~~~~ 138 (346)
T 1y8q_A 78 AQFLIRTGSVGRNRAEASLERAQNLNPMV------DVKVDTED-------IEK--KPESFFT----QFDAVCLTCCSRDV 138 (346)
T ss_dssp GCTTSCSSCTTSBHHHHHHHHHHHTCTTS------EEEEECSC-------GGG--CCHHHHT----TCSEEEEESCCHHH
T ss_pred CCCccccccCcCCHHHHHHHHHHhHCCCe------EEEEEecc-------cCc--chHHHhc----CCCEEEEcCCCHHH
Confidence 344444445564 4666666666666763 23333321 221 1223332 22589999999999
Q ss_pred HHHHHHHHHHcCCCEeec
Q 016228 177 AESAKKACELWGIPSTDV 194 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vDl 194 (393)
|..+.+.|.++++|+|+.
T Consensus 139 r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 139 IVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 999999999999999985
No 414
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=26.57 E-value=22 Score=33.31 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
|.|+|.|++|||=|+-.|+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999984
No 415
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=26.40 E-value=21 Score=36.00 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=22.9
Q ss_pred EEEccCCC-CCChhhHHhh----hcCceeeec
Q 016228 256 ILSGVSRT-GKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 256 VLvGVSRT-sKTPlSmYLA----~~G~KVANv 282 (393)
-+|||.+| |||=||-||+ ..||||.+|
T Consensus 65 ~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 65 PSIHIAGTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 46788887 8999999999 469999876
No 416
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=26.39 E-value=26 Score=29.00 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.-|+++|-+.+|||=|.-.|.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999888854
No 417
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=26.38 E-value=23 Score=30.05 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=27.1
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcccc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRKHK 383 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~~~ 383 (393)
.++++.++. +|+++-++ +..|+|.-..|++.+.++...
T Consensus 152 ~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 152 EASRFAQEN-ELMFLETSALTGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 455666775 89998775 557899888888877655433
No 418
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=26.33 E-value=22 Score=31.85 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.2
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|.--|+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEECTTSCHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4599999999998877776
No 419
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=26.21 E-value=29 Score=30.82 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=19.9
Q ss_pred EEccCCCCCChhhHHhh----hcCceeeec
Q 016228 257 LSGVSRTGKTPLSIYLA----QKGYKVANV 282 (393)
Q Consensus 257 LvGVSRTsKTPlSmYLA----~~G~KVANv 282 (393)
+.|--++|||=+++-|| ++|+||.=+
T Consensus 6 vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 35777999999886665 689999633
No 420
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=26.20 E-value=24 Score=28.29 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=24.9
Q ss_pred HHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 346 AGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 346 A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
++.+..++ +|+++-++ +..|+|.-..|.+.+..++
T Consensus 134 ~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 134 GRACAVVF-DCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHH-TSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 44455564 88998875 5569999888888776543
No 421
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=26.16 E-value=28 Score=31.56 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.3
Q ss_pred cCCCCCChhhHHhh----hcCceeee
Q 016228 260 VSRTGKTPLSIYLA----QKGYKVAN 281 (393)
Q Consensus 260 VSRTsKTPlSmYLA----~~G~KVAN 281 (393)
-.++|||=++.-|| ++|+||.=
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVll 70 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence 67999999888776 68999963
No 422
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=26.06 E-value=27 Score=28.79 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
.++++.+++ +|+++-++ +..|+|.-..|++.+..+.
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 135 EAQAVAQEW-KCAFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 345556664 88988775 5679999999998886553
No 423
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=26.01 E-value=49 Score=35.23 Aligned_cols=30 Identities=0% Similarity=-0.081 Sum_probs=27.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDl 194 (393)
-+||-+.-+.+.|..+.+.|.++|+|+|+.
T Consensus 433 DlVvd~tDn~~tR~~ln~~c~~~~~PlI~a 462 (615)
T 4gsl_A 433 DIIFLLVDSRESRWLPSLLSNIENKTVINA 462 (615)
T ss_dssp SEEEECCSSGGGTHHHHHHHHHTTCEEEEE
T ss_pred CEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 499999999999999999999999999984
No 424
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=25.96 E-value=18 Score=30.55 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.8
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016228 254 DIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA 273 (393)
-|+|+|.+++|||=|.--|+
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 49999999999997766665
No 425
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=25.66 E-value=27 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 344 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
+.++++.+++ +++++-++ +..|+|.-..|++.+..+
T Consensus 140 ~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 140 EEAKNRAEQW-NVNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHH-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 3556666775 89998775 458999988888877554
No 426
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=25.62 E-value=27 Score=27.73 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+++|-+++|||=|.-.|.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999998888744
No 427
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=25.58 E-value=22 Score=32.17 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.7
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
=++|.|.+|+|||=|...+++
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988884
No 428
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=25.49 E-value=26 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=27.2
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 344 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
+.++++++++ +|+++-++ +..|+|.-..|++.+..++
T Consensus 144 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 144 EEAKNRAEQW-NVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 4556667775 89999875 4578999888888776543
No 429
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=25.49 E-value=28 Score=29.10 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
..-|+|+|-+.+|||=|.-.|.+..+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 45699999999999999888885433
No 430
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=25.48 E-value=22 Score=29.57 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.2
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..-|+|+|.+.+|||=|.-.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999888888743
No 431
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=25.47 E-value=21 Score=33.43 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=22.7
Q ss_pred EEE--EccCCCCCChhhHHhhhc----------Cceeeeccc
Q 016228 255 IIL--SGVSRTGKTPLSIYLAQK----------GYKVANVPI 284 (393)
Q Consensus 255 IVL--vGVSRTsKTPlSmYLA~~----------G~KVANvPL 284 (393)
++| .|.+|||||=|.-.+++. ++.+.-+..
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred EEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 555 699999999999988842 566665553
No 432
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=25.44 E-value=1e+02 Score=31.81 Aligned_cols=30 Identities=17% Similarity=-0.067 Sum_probs=28.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDl 194 (393)
-+||-+..+.+.|..+.+.|...++|+|+.
T Consensus 126 DvVi~~~d~~~~r~~ln~~c~~~~iplI~~ 155 (531)
T 1tt5_A 126 TVVVATQLPESTSLRLADVLWNSQIPLLIC 155 (531)
T ss_dssp SEEEEESCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 589999999999999999999999999986
No 433
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=25.35 E-value=30 Score=28.11 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=26.1
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhc
Q 016228 344 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 380 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r 380 (393)
+.++++++++ +++++-++ +..|+|.-..|.+.+.++
T Consensus 167 ~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 167 LEVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4556667775 89999775 457888888888776543
No 434
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=25.29 E-value=28 Score=33.19 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=68.4
Q ss_pred EEEEEeCChHHHHHHHHHHHHccCCCCcc-cCccceeEEEccCCccc-cCcCCHHHHHHHHHHHhhCCCEEEEEcCCHHH
Q 016228 99 SIYMVSDGTGWTAEHAVNAALGQFEHCLV-DRNCAVNTHLFSGLQQF-CQIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 176 (393)
Q Consensus 99 ~IfiVSDsTGeTAe~l~~AaLaQF~~~~~-~~~~~~~~~~~p~~~~~-~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~eL 176 (393)
.|.++ |.|-++..+++.+..+++ +.+ +++.+--....++...+ --+.+.+.+.+.+++. -+|+.++ -+.+
T Consensus 18 kilvl--GaG~vG~~~~~~L~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~----DvVi~~~-p~~~ 89 (365)
T 3abi_A 18 KVLIL--GAGNIGRAIAWDLKDEFD-VYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEF----ELVIGAL-PGFL 89 (365)
T ss_dssp EEEEE--CCSHHHHHHHHHHTTTSE-EEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTC----SEEEECC-CGGG
T ss_pred EEEEE--CCCHHHHHHHHHHhcCCC-eEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCC----CEEEEec-CCcc
Confidence 47777 559999999987665542 110 00000000000000000 0155666666655432 3666654 6667
Q ss_pred HHHHHHHHHHcCCCEeecch--H---HHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhh
Q 016228 177 AESAKKACELWGIPSTDVLG--P---ITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIE 233 (393)
Q Consensus 177 r~~l~~~~~~~gi~~vDll~--p---~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIe 233 (393)
-..+.+.|-+.|+.++|+=. + -+....+.-|+.-..-.+-.||+.+-+-...+++++
T Consensus 90 ~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~~~~ 151 (365)
T 3abi_A 90 GFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELD 151 (365)
T ss_dssp HHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHHHSC
T ss_pred cchHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCCCchHHHHHHHHHHhcc
Confidence 77888999999999999742 1 234555666665443334566655544444444443
No 435
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=25.28 E-value=26 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~ 274 (393)
--|+++|-+.+|||=|.-.|.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999888774
No 436
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=25.07 E-value=1.2e+02 Score=25.05 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=33.4
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016228 166 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 209 (393)
Q Consensus 166 iV~~Tlvd~-eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~ 209 (393)
+|+..=++| ++...+...|+++|||++-+. --..|....|.+
T Consensus 40 ViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~--sk~eLG~a~g~k 82 (121)
T 2lbw_A 40 VVIAGDIWPADVISHIPVLCEDHSVPYIFIP--SKQDLGAAGATK 82 (121)
T ss_dssp EEECTTCSCTTHHHHHHHHHHHTCCCEEECC--CHHHHHHHHTCS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhcCCcEEEEC--CHHHHHHHhCCC
Confidence 444555677 589999999999999999876 447888889954
No 437
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=25.06 E-value=30 Score=27.24 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.-|+++|-+.+|||=|.-.|.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999987777643
No 438
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.02 E-value=23 Score=37.24 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.2
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016228 254 DIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~~ 275 (393)
-++|+|.++||||=+.-.||+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999954
No 439
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=24.96 E-value=35 Score=28.14 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+++|-+.+|||=|.-.|.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888843
No 440
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=24.94 E-value=2.1e+02 Score=26.28 Aligned_cols=86 Identities=8% Similarity=0.021 Sum_probs=51.3
Q ss_pred HHHHHHHHHccCCCCcccCccceeEEEccCCccccCc-CCHHHHHHHHHH----HhhCC--CEEEEEcCCHH-HHHHHHH
Q 016228 111 AEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQI-DDVEQLMVIIKQ----AAKDG--AMLVYTLADPS-MAESAKK 182 (393)
Q Consensus 111 Ae~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V-~t~e~l~~ii~~----a~~~~--~iV~~Tlvd~e-Lr~~l~~ 182 (393)
.-++.+.+..++|+.+ +..|.--.++||. .+.+.+.+.+.+ +.+.| ++|+..-.... ..+.++
T Consensus 15 Gltv~~~i~~~lP~~~--------~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr- 85 (267)
T 2gzm_A 15 GLTVAKELIRQLPKER--------IIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQ- 85 (267)
T ss_dssp THHHHHHHHHHCTTSC--------EEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCCC--------EEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH-
Confidence 3456677888888632 2223333445554 567777666443 33444 56665444443 334444
Q ss_pred HHHHcCCCEeecchHHHHHHHHHhC
Q 016228 183 ACELWGIPSTDVLGPITEAIASHLG 207 (393)
Q Consensus 183 ~~~~~gi~~vDll~p~i~~Le~~lG 207 (393)
+..+||++.+..|.+.......+
T Consensus 86 --~~~~iPvigi~ep~~~~A~~~~~ 108 (267)
T 2gzm_A 86 --KQLPIPVVGVIHPGSRTALKVTN 108 (267)
T ss_dssp --HHCSSCEEESHHHHHHHHHHHCS
T ss_pred --HhCCCCEEeecHHHHHHHHHccC
Confidence 44589999999999998876543
No 441
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=24.79 E-value=40 Score=29.17 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhC--C-CEEEEEcCC------------HHHHHHHHHHHH-HcCCCEeecchHH
Q 016228 152 QLMVIIKQAAKD--G-AMLVYTLAD------------PSMAESAKKACE-LWGIPSTDVLGPI 198 (393)
Q Consensus 152 ~l~~ii~~a~~~--~-~iV~~Tlvd------------~eLr~~l~~~~~-~~gi~~vDll~p~ 198 (393)
.+.++|+.+.+. + .+|+.|+.- .++.+.+++.|+ +.|++++|+...+
T Consensus 117 ~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~v~~iD~~~~~ 179 (229)
T 1fxw_F 117 GIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGF 179 (229)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSSSSSSEEEECCCCSC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCCCCchhhHHHHHHHHHHHHHHHHhcCCCeEEEeCHHHh
Confidence 456667776543 2 377766532 256677888887 7899999998754
No 442
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.78 E-value=24 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhh-cC
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ-KG 276 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~-~G 276 (393)
=++|.|..|+|||=|...+++ .|
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC
Confidence 489999999999999988884 34
No 443
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=24.72 E-value=29 Score=29.00 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=20.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
...-|+|+|-+++|||=|.-.|.+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456999999999999998777743
No 444
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=24.58 E-value=1.7e+02 Score=25.61 Aligned_cols=29 Identities=3% Similarity=-0.191 Sum_probs=20.4
Q ss_pred cCccEEEEEeCC--hHHHHHHHHHHHHccCC
Q 016228 95 MEGKSIYMVSDG--TGWTAEHAVNAALGQFE 123 (393)
Q Consensus 95 ~~~~~IfiVSDs--TGeTAe~l~~AaLaQF~ 123 (393)
|...+|.+|+-| .+-.-..++++++.+++
T Consensus 4 M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~ 34 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKASFNAAVARALPEIAP 34 (199)
T ss_dssp -CCEEEEEEECCCSTTCHHHHHHHHHHHHCC
T ss_pred CCCCEEEEEEcCCCCCChHHHHHHHHHHHcc
Confidence 445678888777 45556678888888886
No 445
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.57 E-value=24 Score=36.00 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.7
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
=++|+|.++||||=+.-.||+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988883
No 446
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=24.56 E-value=31 Score=36.13 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=21.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhh-cC
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQ-KG 276 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~-~G 276 (393)
..-++|.|.++||||=+.-.||+ .|
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34699999999999999999994 44
No 447
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.44 E-value=21 Score=37.00 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..|+|+|.++||||=+.-++|+.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTT
T ss_pred cceEEECCCchHHHHHHHHHHHh
Confidence 47999999999999999999964
No 448
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=24.34 E-value=2.5e+02 Score=21.94 Aligned_cols=57 Identities=7% Similarity=0.124 Sum_probs=38.1
Q ss_pred HHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCCCE--eecc----hH-HHHHHHHHhCCCC
Q 016228 154 MVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPS--TDVL----GP-ITEAIASHLGVSP 210 (393)
Q Consensus 154 ~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~--vDll----~p-~i~~Le~~lG~~P 210 (393)
.+-++++.+++.+++||--.=-....++....++|+++ +|+- ++ +-..|.+.+|...
T Consensus 7 ~~~~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~t 70 (114)
T 3h8q_A 7 RRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKT 70 (114)
T ss_dssp HHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCc
Confidence 34455555566799999887667777888888888876 4553 12 3356777788643
No 449
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=24.31 E-value=23 Score=37.07 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.-++|+|.++||||=+.-.||+.
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999953
No 450
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=24.30 E-value=30 Score=32.04 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=24.7
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016228 254 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 282 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANv 282 (393)
-+-|+|..++|||-.|-.|| .+|+..-+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 36799999999999999999 578877654
No 451
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=24.23 E-value=29 Score=29.84 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+|+|-+.+|||=|.-.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999998888754
No 452
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=24.20 E-value=29 Score=31.85 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=19.5
Q ss_pred EEEE-ccCCCCCChhhHHhhh-cCceee
Q 016228 255 IILS-GVSRTGKTPLSIYLAQ-KGYKVA 280 (393)
Q Consensus 255 IVLv-GVSRTsKTPlSmYLA~-~G~KVA 280 (393)
++|+ |.++||||=+...||+ .|..+.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 4555 5599999999999994 565543
No 453
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=24.19 E-value=38 Score=33.16 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=16.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
|||+|-|++|||=+..++.
T Consensus 2 IvllGdsgvGKTSLl~~~~ 20 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVF 20 (331)
T ss_dssp EEEECSTTSSTTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999876654
No 454
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=24.17 E-value=2.2e+02 Score=22.64 Aligned_cols=58 Identities=7% Similarity=0.130 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCEEEEEc-----CCHHHHHHHHHHHHHcCCCE--eecch--HHHHHHHHHhCCCC
Q 016228 153 LMVIIKQAAKDGAMLVYTL-----ADPSMAESAKKACELWGIPS--TDVLG--PITEAIASHLGVSP 210 (393)
Q Consensus 153 l~~ii~~a~~~~~iV~~Tl-----vd~eLr~~l~~~~~~~gi~~--vDll~--p~i~~Le~~lG~~P 210 (393)
+.+.|+++.+++++|+||= -.=-....+++...++||++ +|+.. .....|.+.+|...
T Consensus 5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~t 71 (111)
T 3zyw_A 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPT 71 (111)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCC
Confidence 5556777777889999997 33334566677777778776 46652 44567777778643
No 455
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=24.16 E-value=27 Score=29.90 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=17.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
+.|+|.+++|||=|.--|+.
T Consensus 36 v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999888873
No 456
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=24.13 E-value=1.3e+02 Score=30.42 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=67.9
Q ss_pred cCCH-HHHHHHHHHHhhCCCEEEEEcCCHHHHHHHHHHHHHcCCCE--eecc-----hHHHHHHHHHhCCCCCCCCCCCC
Q 016228 147 IDDV-EQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPS--TDVL-----GPITEAIASHLGVSPSGLPRGAP 218 (393)
Q Consensus 147 V~t~-e~l~~ii~~a~~~~~iV~~Tlvd~eLr~~l~~~~~~~gi~~--vDll-----~p~i~~Le~~lG~~P~~~~~~~p 218 (393)
+++. +++++++ ....+++||-..=-....++++.+++++++ +|+- ..+...+.+.+|.... |
T Consensus 4 ~~~~~~~v~~~i----~~~~v~vy~~~~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tv------P 73 (598)
T 2x8g_A 4 ADGTSQWLRKTV----DSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETV------P 73 (598)
T ss_dssp --CHHHHHHHHH----HHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCS------C
T ss_pred CccHHHHHHHHh----ccCCEEEEECCCChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCcee------C
Confidence 4455 4555554 344688999888666777888888888865 5654 4556778888888763 3
Q ss_pred CCC------CCCcH--HHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016228 219 GRN------FPLSE--EYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 280 (393)
Q Consensus 219 G~~------~~ld~--~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~G~KVA 280 (393)
... ...++ ++. .+..++=.+.-. -..-|||+||--=.| --...+||++|++|+
T Consensus 74 ~v~i~g~~igG~~~l~~~~-~~g~L~~~l~~~-------~~~~dvvVIG~GpAG-l~aA~~l~~~g~~v~ 134 (598)
T 2x8g_A 74 QMFVRGKFIGDSQTVLKYY-SNDELAGIVNES-------KYDYDLIVIGGGSGG-LAAGKEAAKYGAKTA 134 (598)
T ss_dssp EEEETTEEEECHHHHHHHH-HTTCHHHHHHCC-------SSSEEEEEECCSHHH-HHHHHHHHHTTCCEE
T ss_pred EEEECCEEEEeeehhhhhh-hcCcchhhcccc-------cccccEEEECCCccH-HHHHHHHHhCCCeEE
Confidence 221 11111 111 222333333321 134699999965333 346789999999875
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=24.04 E-value=28 Score=28.34 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=26.9
Q ss_pred HHHHHHhhhCCCCcEEeCCCc---cHHHHHHHHHHHHhhccccC
Q 016228 344 EFAGRIFAQNPVWPVIEVTGK---AIEETAAVVLRLYHDRKHKC 384 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT~k---SIEEtAa~Il~~~~~r~~~~ 384 (393)
+.++++.+++ +|+++-++.+ .|+|.-..|++.+..++..+
T Consensus 132 ~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 132 EEGKALAESW-NAAFLESSAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHHT-TCEEEECCTTSHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHh-CCcEEEEecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 3466777785 9999998655 57777778887776665443
No 458
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=23.90 E-value=32 Score=27.88 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.--|+++|-+.+|||=|.-.|.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999988887744
No 459
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=23.89 E-value=26 Score=31.70 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.6
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|---|+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4699999999998766555
No 460
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.84 E-value=20 Score=29.84 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.9
Q ss_pred EEEEccCCCCCChh
Q 016228 255 IILSGVSRTGKTPL 268 (393)
Q Consensus 255 IVLvGVSRTsKTPl 268 (393)
.+|+|.+++|||=+
T Consensus 29 ~~i~G~NGsGKStl 42 (182)
T 3kta_A 29 TAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999986
No 461
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=23.83 E-value=58 Score=27.79 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=34.6
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 166 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 166 iV~~Tlvd~-eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
+|+..=++| ++...+...|+++|||++-+. --..|....|.+-
T Consensus 52 ViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~--sk~eLG~a~G~~~ 95 (134)
T 2ale_A 52 IIMAADCEPIEILLHLPLLCEDKNVPYVFVP--SRVALGRACGVSR 95 (134)
T ss_dssp EEEETTCSSGGGGTHHHHHHHHHTCCEEEES--CHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC--CHHHHHHHhCCCC
Confidence 455666778 599999999999999998873 4568999999863
No 462
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=23.77 E-value=26 Score=35.91 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
++|+|.++||||=|.-.+|+
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999884
No 463
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=23.56 E-value=1.3e+02 Score=23.98 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=57.9
Q ss_pred ccEEEEEeCCh-HHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCH--HHHHHHHHHHhhCCCEEEEEcCC
Q 016228 97 GKSIYMVSDGT-GWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDV--EQLMVIIKQAAKDGAMLVYTLAD 173 (393)
Q Consensus 97 ~~~IfiVSDsT-GeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~--e~l~~ii~~a~~~~~iV~~Tlvd 173 (393)
+..||-++-.. -.+|+.+-+++ .+... +...-+.-+ ..++||++- .-+.++.+++++.|.-|+.+=++
T Consensus 20 ~v~v~~~~G~L~f~~a~~~~~~l-~~~~~-----~~~~vvlDl---s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 90 (130)
T 4dgh_A 20 ELAVYALEGPFFFAAAETFERVM-GSIQE-----TPQILILRL---KWVPFMDITGIQTLEEMIQSFHKRGIKVLISGAN 90 (130)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHH-HHSSS-----CCSEEEEEC---TTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred CEEEEEEeeeEeehhHHHHHHHH-HHhcc-----CCCEEEEEC---CCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 44455444332 34667766654 33311 112222232 345558764 34555566777788877788889
Q ss_pred HHHHHHHHHHHHHcCC---CEeecchHHHHHHHHHhCCCC
Q 016228 174 PSMAESAKKACELWGI---PSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 174 ~eLr~~l~~~~~~~gi---~~vDll~p~i~~Le~~lG~~P 210 (393)
+.+++.++...-..-+ .+++=+.-.+...+..++.+|
T Consensus 91 ~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~~~~~~ 130 (130)
T 4dgh_A 91 SRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQP 130 (130)
T ss_dssp HHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHHhccCC
Confidence 9999888864321111 245555666666666665544
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=23.52 E-value=27 Score=31.66 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.7
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|.--|+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5699999999999887777
No 465
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=23.47 E-value=26 Score=34.52 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=17.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 285 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLV 285 (393)
|+|||-+.+|||=|--.|.+....++|+|.+
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~~~~~~~p~t 33 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFT 33 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC-----------
T ss_pred EEEECCCCCCHHHHHHHHHCCCCcccCCCCc
Confidence 7899999999998777777544788899865
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=23.42 E-value=31 Score=29.25 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=27.1
Q ss_pred HHHHHHhhhCCCC-cEEeC---CCccHHHHHHHHHHHHhhcc
Q 016228 344 EFAGRIFAQNPVW-PVIEV---TGKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 344 ~~A~~lf~k~~g~-pVIDV---T~kSIEEtAa~Il~~~~~r~ 381 (393)
+.++++.+++ || +++-+ |+..|+|.-..|++.+.++.
T Consensus 155 ~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 155 AEAQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHT-TCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 3456667775 88 88887 45679999888888776543
No 467
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=23.38 E-value=27 Score=34.69 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016228 255 IILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~ 274 (393)
+.|+|.|+||||=|.--||-
T Consensus 50 ~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 67999999999999888883
No 468
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=23.36 E-value=33 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~ 274 (393)
--|+++|-+.+|||=|.-.|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999998888864
No 469
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=23.25 E-value=28 Score=33.86 Aligned_cols=30 Identities=30% Similarity=0.244 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016228 255 IILSGVSRTGKTPLSIYLAQKGYKVANVPI 284 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPL 284 (393)
|+|+|.+.+|||=|--.|+.....+.++|.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~ 211 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLF 211 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC---------
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcc
Confidence 889999999999998888866566666654
No 470
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=23.13 E-value=27 Score=34.67 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|+||||=|.--||
T Consensus 32 ~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHH
Confidence 5699999999999988777
No 471
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=23.08 E-value=28 Score=29.85 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016228 223 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 223 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~ 274 (393)
..-+-||+-+..-+ .+.....--|+++|-+.+|||=|.-.|.+
T Consensus 14 ~~~~~~~~~~~~~~---------~~~~~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 14 GTENLYFQSMAGEE---------APPGVRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp ---------------------------CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cccccccccccccc---------CCCCcceEEEEEECcCCCCHHHHHHHHHc
Confidence 44467888776433 23334456799999999999999888874
No 472
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=23.08 E-value=42 Score=30.51 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccccCC
Q 016228 228 YFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMG 287 (393)
Q Consensus 228 YF~RIeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA----~~G~KVANvPLVp~ 287 (393)
|-+|+.-..-.+.-.++.... .+.-|++.+-.++|||-.++=|| .+|+||.=+-++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 6 YQQRQQKVKDRVDARVAQAQE--ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp -----------------------CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHhhcccchhhhhhhccc--cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 444444444444444554444 36789999999999999888877 68999998877764
No 473
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=23.05 E-value=41 Score=30.13 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=24.8
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016228 233 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 233 eAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
+|++..++. -+++|+|..++|||=+.+.++..
T Consensus 100 ~ai~~~~~~-----------~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 100 KALERWLVD-----------KRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp HHHHHHTTT-----------SEEEEEESSSTTHHHHHHHHHHH
T ss_pred HHHHHHHhC-----------CCEEEEeCCCCCHHHHHHHHHHH
Confidence 567765543 24999999999999999888843
No 474
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=23.04 E-value=30 Score=29.10 Aligned_cols=36 Identities=6% Similarity=-0.036 Sum_probs=25.6
Q ss_pred HHHHHhhhCCCCcEEeCCCc---cHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEVTGK---AIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT~k---SIEEtAa~Il~~~~~r~ 381 (393)
.++++.+.+ ||+++-++.+ .|+|.-..|++.+.+..
T Consensus 151 ~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 151 EGKKLAESW-GATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHH-TCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh-CCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 456666675 8999988664 57888888888775543
No 475
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=23.01 E-value=34 Score=30.04 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016228 255 IILSGVSRTGKTPLSIYLA----QKGYKVA 280 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA----~~G~KVA 280 (393)
|++=|+-|+|||=.+-.|+ .+|++|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 6777999999999666555 5688764
No 476
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=22.96 E-value=34 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhhcc
Q 016228 345 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 381 (393)
Q Consensus 345 ~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~~r~ 381 (393)
.++++.+++ +|+++-++ +..|+|.-..|++.+..++
T Consensus 130 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 130 QAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 455566675 89999875 5679998888888775543
No 477
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=22.96 E-value=2.1e+02 Score=23.03 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=34.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016228 166 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 210 (393)
Q Consensus 166 iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P 210 (393)
+|+..=+.+++...+...|++++||++-+ .+--..|...+|...
T Consensus 41 ViiA~D~~~~~~~~l~~~c~~~~Vp~~~~-~~sk~eLG~a~G~~~ 84 (110)
T 3cpq_A 41 VVLAGNIPKDLEEDVKYYAKLSNIPVYQH-KITSLELGAVCGKPF 84 (110)
T ss_dssp EEECTTCBHHHHHHHHHHHHHTTCCEEEC-CSCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEE-cCCHHHHHHHhCCcc
Confidence 44444558999999999999999998875 234578889999764
No 478
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=22.92 E-value=31 Score=28.43 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.3
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.--|+|+|-+++|||=|.-.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999988888754
No 479
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=22.89 E-value=32 Score=28.69 Aligned_cols=34 Identities=21% Similarity=-0.003 Sum_probs=25.0
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHh
Q 016228 344 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYH 378 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDVT---~kSIEEtAa~Il~~~~ 378 (393)
+.++++.++. ||+++-++ +..|+|.-..|.+.+.
T Consensus 149 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 149 KDAKEYAESI-GAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHTT-TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 3466677775 89999875 5578888888877653
No 480
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=22.89 E-value=1.8e+02 Score=28.76 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEee
Q 016228 149 DVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPSTD 193 (393)
Q Consensus 149 t~e~l~~ii~~a~~~~-~iV~~Tlvd~eLr~~l~~~~~~~gi~~vD 193 (393)
|-+++.++++.|++++ ++--+-+.+-+.-+.+-+.|++.+-|+|=
T Consensus 5 ~~~~~~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIl 50 (349)
T 3elf_A 5 TPEVYAEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGII 50 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEE
Confidence 5677778888877777 77777777878777777788888777763
No 481
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=22.78 E-value=28 Score=32.08 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|.--|+
T Consensus 28 v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEECSTTCSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 6799999999998765444
No 482
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.77 E-value=1.9e+02 Score=22.78 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=29.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016228 166 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 209 (393)
Q Consensus 166 iV~~Tlvd~eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~ 209 (393)
+|+..=..++....+...|++++||++.+. +--..|...+|.+
T Consensus 35 ViiA~D~~~~~~~~i~~~c~~~~ip~~~~~-~s~~eLG~a~Gk~ 77 (99)
T 3j21_Z 35 IIVAKNAPKEIKDDIYYYAKLSDIPVYEFE-GTSVELGTLLGKP 77 (99)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCCEEEEC-CCSCGGGGTTCST
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEeC-CCHHHHHHHHCCC
Confidence 444555789999999999999999987651 1233455555544
No 483
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=22.68 E-value=1.3e+02 Score=25.85 Aligned_cols=54 Identities=13% Similarity=0.329 Sum_probs=35.1
Q ss_pred HHHHHHhhCC-CEEEEEcC-------CHHHHHHHHHHHHHcCCCEeecc---hHHHHHHHHHhCCC
Q 016228 155 VIIKQAAKDG-AMLVYTLA-------DPSMAESAKKACELWGIPSTDVL---GPITEAIASHLGVS 209 (393)
Q Consensus 155 ~ii~~a~~~~-~iV~~Tlv-------d~eLr~~l~~~~~~~gi~~vDll---~p~i~~Le~~lG~~ 209 (393)
.|++.+++.. .+|++|-- +++. ..|++.|-.++|||+==+ .-++..|+...|-.
T Consensus 65 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~-~~IrR~A~~~~IP~~T~latA~a~v~al~~~~~~~ 129 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFRDPLTAQPHEPDV-QALLRVCDVHGVPLATNPMAAEALIPWLQSLVGYQ 129 (134)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTCCTTSCCS-HHHHHHHHHHTCCEECSHHHHHHHHHHHHTCTTCC
T ss_pred hHHHHHHCCCccEEEEccCcccCCCccchH-HHHHHHHHHcCCCeEcCHHHHHHHHHHHHHHhCcC
Confidence 4555555444 68888875 2232 468889999999997544 45566666555543
No 484
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=22.48 E-value=29 Score=31.62 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=16.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|.--|+
T Consensus 27 ~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4599999999999887777
No 485
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=22.38 E-value=30 Score=30.78 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=24.2
Q ss_pred HHHHHHhhhCCCCcEEeC---CCccHHHHHHHHHHHHh
Q 016228 344 EFAGRIFAQNPVWPVIEV---TGKAIEETAAVVLRLYH 378 (393)
Q Consensus 344 ~~A~~lf~k~~g~pVIDV---T~kSIEEtAa~Il~~~~ 378 (393)
+.|+++.+++ ||+++.| |+..|+|.=..|.+.+.
T Consensus 139 ~e~~~~a~~~-~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 139 EEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHH-TCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred HHHhhHHHHh-CCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 3677777885 9999988 45678887777666553
No 486
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=22.38 E-value=29 Score=32.23 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.2
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|.--|+
T Consensus 48 ~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4599999999999877776
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=22.26 E-value=24 Score=37.97 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016228 254 DIILSGVSRTGKTPLSIYLAQ 274 (393)
Q Consensus 254 DIVLvGVSRTsKTPlSmYLA~ 274 (393)
-++|+|+++||||=+.-.||+
T Consensus 513 ~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHH
T ss_pred eeEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999994
No 488
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=22.23 E-value=46 Score=34.41 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=24.8
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh
Q 016228 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 232 IeAIEFAlkhDDG~~p~~L~eADIVLvGVSRTsKTPlSmYLA 273 (393)
.+||..|+...| + .+|.|+.+||||=|...+.
T Consensus 195 ~~AV~~al~~~~------~----~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 195 KEAVLFALSQKE------L----AIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp HHHHHHHHHCSS------E----EEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCC------c----eEEECCCCCCHHHHHHHHH
Confidence 579999997432 1 3788999999999877655
No 489
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=22.14 E-value=90 Score=33.29 Aligned_cols=30 Identities=10% Similarity=0.298 Sum_probs=28.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016228 165 AMLVYTLADPSMAESAKKACELWGIPSTDV 194 (393)
Q Consensus 165 ~iV~~Tlvd~eLr~~l~~~~~~~gi~~vDl 194 (393)
-+||-++-+.+.|.++.+.|..+++|+|+.
T Consensus 110 DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~ 139 (640)
T 1y8q_B 110 ILVMNALDNRAARNHVNRMCLAADVPLIES 139 (640)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 599999999999999999999999999984
No 490
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=22.10 E-value=29 Score=34.13 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.3
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|+||||=|---||
T Consensus 33 ~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHh
Confidence 5699999999998877666
No 491
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=22.04 E-value=30 Score=31.91 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016228 255 IILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 255 IVLvGVSRTsKTPlSmYLA 273 (393)
+.|+|.|++|||=|.--|+
T Consensus 35 ~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4599999999999887777
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=22.04 E-value=39 Score=27.96 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
.-|+++|-+.+|||=|.-.|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999988888754
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=21.98 E-value=34 Score=28.14 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.4
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCc
Q 016228 252 KADIILSGVSRTGKTPLSIYLAQKGY 277 (393)
Q Consensus 252 eADIVLvGVSRTsKTPlSmYLA~~G~ 277 (393)
.--|+++|-+.+|||=|.-.|.+..+
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35699999999999999988885433
No 494
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=21.81 E-value=32 Score=28.92 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
--|+++|-+++|||=|.--|.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999988878753
No 495
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=21.78 E-value=37 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.0
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016228 253 ADIILSGVSRTGKTPLSIYLA 273 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA 273 (393)
--|+|||-+.+|||=|..-|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 359999999999998877776
No 496
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=21.72 E-value=39 Score=32.79 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.2
Q ss_pred CEEEEEcCCHH-HHHHHHHHHHHcCCCEeec
Q 016228 165 AMLVYTLADPS-MAESAKKACELWGIPSTDV 194 (393)
Q Consensus 165 ~iV~~Tlvd~e-Lr~~l~~~~~~~gi~~vDl 194 (393)
-+||-+.-+.+ .|..+.+.|.+.|+|+|+.
T Consensus 210 DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~ 240 (353)
T 3h5n_A 210 DIWVVSADHPFNLINWVNKYCVRANQPYINA 240 (353)
T ss_dssp SEEEECCCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEecCChHHHHHHHHHHHHHhCCCEEEE
Confidence 47887778888 9999999999999999974
No 497
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=21.64 E-value=36 Score=30.62 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeee
Q 016228 253 ADIILSGVSRTGKTPLSIYLAQKGYKVAN 281 (393)
Q Consensus 253 ADIVLvGVSRTsKTPlSmYLA~~G~KVAN 281 (393)
--|+|||-+++|||=|.-.|.......+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~ 50 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSR 50 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccc
Confidence 35999999999999887666643333333
No 498
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=21.64 E-value=40 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=19.8
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016228 251 QKADIILSGVSRTGKTPLSIYLAQK 275 (393)
Q Consensus 251 ~eADIVLvGVSRTsKTPlSmYLA~~ 275 (393)
..--|+++|-+.+|||=|.-.|.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999888777643
No 499
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.62 E-value=31 Score=31.26 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHH-HHHHHHHHH
Q 016228 332 NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEE-TAAVVLRLY 377 (393)
Q Consensus 332 ~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEE-tAa~Il~~~ 377 (393)
.++--++=+ +.-|+.+..+ +.+-+.|=-.-+... +...|++.+
T Consensus 127 ~LSgGqkqR--v~lAraL~~~-p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 127 NLSGGQKQR--VSLARAVYSN-ADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp CCCHHHHHH--HHHHHHHHHC-CSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred CCCHHHHHH--HHHHHHHhcC-CCEEEEeCcccccCHHHHHHHHHHH
Confidence 444443333 6778889888 577788855555443 455666666
No 500
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.57 E-value=75 Score=26.49 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=37.3
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---HHhhhCCCCcEEeCCCccHHHHHHHHHHH
Q 016228 300 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---RIFAQNPVWPVIEVTGKAIEETAAVVLRL 376 (393)
Q Consensus 300 ~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~---~lf~k~~g~pVIDVT~kSIEEtAa~Il~~ 376 (393)
+.+|-|+.+++.+.+ |+..-+ .+ +.+.+.+.+.... ..... .. -+||.+. ++||++..|.++
T Consensus 126 d~~i~l~~~~e~~~~----R~~~R~-------~~-~~~~~~~~i~~~~~~~~~~~~-ad-~vId~~~-~~~~~~~~i~~~ 190 (203)
T 1uf9_A 126 HGTLLVAAPLEERVR----RVMARS-------GL-SREEVLARERAQMPEEEKRKR-AT-WVLENTG-SLEDLERALKAV 190 (203)
T ss_dssp SEEEEECCCHHHHHH----HHHTTT-------CC-TTHHHHHHHTTSCCHHHHHHH-CS-EEECCSS-HHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHH----HHHHcC-------CC-CHHHHHHHHHHCCChhHHHHh-CC-EEEECCC-CHHHHHHHHHHH
Confidence 478999999976654 432110 11 1223332222111 11222 23 4899887 999999999998
Q ss_pred Hhh
Q 016228 377 YHD 379 (393)
Q Consensus 377 ~~~ 379 (393)
+..
T Consensus 191 ~~~ 193 (203)
T 1uf9_A 191 LAE 193 (203)
T ss_dssp HHS
T ss_pred HHH
Confidence 864
Done!