BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016230
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|B Chain B, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|C Chain C, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|D Chain D, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|E Chain E, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|F Chain F, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ7|A Chain A, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|B Chain B, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|C Chain C, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|D Chain D, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|E Chain E, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|F Chain F, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ9|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Acetate.
pdb|1OQB|A Chain A, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|B Chain B, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|C Chain C, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|D Chain D, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|E Chain E, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|F Chain F, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|2XZ0|A Chain A, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|B Chain B, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|C Chain C, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|A Chain A, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|B Chain B, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 363
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/362 (86%), Positives = 339/362 (93%), Gaps = 1/362 (0%)
Query: 30 ASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVE 89
ASTL +KEV NLKKP+ PPREVHVQVTHSMP QK+EIFKSL+ WAEENILVHLKPVE
Sbjct: 1 ASTLKSG-SKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVE 59
Query: 90 KCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLD 149
KCWQP D+LP+P S+GF EQV+ELRER KEIPDDYFVVLVGDMITEEALPTYQTMLNTLD
Sbjct: 60 KCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLD 119
Query: 150 GVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDP 209
GVRDETGAS TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM+QIEKTIQYLIGSGMDP
Sbjct: 120 GVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDP 179
Query: 210 KTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269
+TEN+PYLGFIYTSFQERATFISHGNTAR AKE+GD+KLAQICG IA+DEKRHETAYTKI
Sbjct: 180 RTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKI 239
Query: 270 VEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYAD 329
VEKLFEIDPDGTV+A ADMM+KKISMPAHLMYDGRDDNLF+HFS VAQRLGVYTAKDYAD
Sbjct: 240 VEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYAD 299
Query: 330 ILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGR 389
ILEFLVGRW V+KLTGLS EG+KAQD+VC LPPRIRRLEERAQGRAK+A +PFSW+F R
Sbjct: 300 ILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDR 359
Query: 390 EI 391
++
Sbjct: 360 QV 361
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|B Chain B, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|C Chain C, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|D Chain D, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|E Chain E, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|F Chain F, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
Length = 363
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/362 (86%), Positives = 338/362 (93%), Gaps = 1/362 (0%)
Query: 30 ASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVE 89
ASTL +KEV NLKKP+ PPREVHVQVTHSMP QK+EIFKSL+ WAEENILVHLKPVE
Sbjct: 1 ASTLKSG-SKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVE 59
Query: 90 KCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLD 149
KCWQP D+LP+P S+GF EQV+ELRER KEIPDDYFVVLVGDMITEEALPTYQTMLNTLD
Sbjct: 60 KCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLD 119
Query: 150 GVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDP 209
GVRDETGAS TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM+QIEKTIQYLIGSGMDP
Sbjct: 120 GVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDP 179
Query: 210 KTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269
+TEN+PYLGFIYTSFQERA FISHGNTAR AKE+GD+KLAQICG IA+DEKRHETAYTKI
Sbjct: 180 RTENSPYLGFIYTSFQERADFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKI 239
Query: 270 VEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYAD 329
VEKLFEIDPDGTV+A ADMM+KKISMPAHLMYDGRDDNLF+HFS VAQRLGVYTAKDYAD
Sbjct: 240 VEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYAD 299
Query: 330 ILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGR 389
ILEFLVGRW V+KLTGLS EG+KAQD+VC LPPRIRRLEERAQGRAK+A +PFSW+F R
Sbjct: 300 ILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDR 359
Query: 390 EI 391
++
Sbjct: 360 QV 361
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/342 (88%), Positives = 325/342 (95%)
Query: 50 PPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQ 109
PPREVHVQVTHSMP QK+EIFKSL+ WAEENILVHLKPVEKCWQP D+LP+P S+GF EQ
Sbjct: 2 PPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQ 61
Query: 110 VKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAW 169
V+ELRER KEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS TSWAIWTRAW
Sbjct: 62 VRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAW 121
Query: 170 TAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERAT 229
TAEENRHGDLLNKYLYLSGRVDM+QIEKTIQYLIGSGMDP+TEN+PYLGFIYTSFQERAT
Sbjct: 122 TAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERAT 181
Query: 230 FISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMM 289
FISHGNTAR AKE+GD+KLAQICG IA+DEKRHETAYTKIVEKLFEIDPDGTV+A ADMM
Sbjct: 182 FISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMM 241
Query: 290 KKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGE 349
+KKISMPAHLMYDGRDDNLF+HFS VAQRLGVYTAKDYADILEFLVGRW V+KLTGLS E
Sbjct: 242 RKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAE 301
Query: 350 GRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREI 391
G+KAQD+VC LPPRIRRLEERAQGRAK+A +PFSW+F R++
Sbjct: 302 GQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQV 343
>pdb|2UW1|A Chain A, Ivy Desaturase Structure
Length = 338
Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/336 (77%), Positives = 298/336 (88%)
Query: 56 VQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRE 115
+QVTHSMP QK+EIFKSL+ WA N+L+HLK VEK WQP DYLP+P S+GF EQV+ELRE
Sbjct: 1 MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRE 60
Query: 116 RCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENR 175
R KEIPDDYFVVLVGDMITEEALPTY +MLN DG++DETGA ++WA+WTRAWTAEENR
Sbjct: 61 RAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENR 120
Query: 176 HGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGN 235
HGDLLNKYLYLSGRVDM++IEKTIQYLIGSGMD K+EN+PYLGFIYTSFQERATFISH N
Sbjct: 121 HGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHAN 180
Query: 236 TARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISM 295
TA+ A+ YGD KLA ICG IASDEKRH TAYTKIVEKL EIDPD TV+A ADMM+KKI+M
Sbjct: 181 TAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM 240
Query: 296 PAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQD 355
PAHLMYDG D+ LF+HF+ VAQRLGVY+A DY DILEFLV +WNVE+LTGLS EGRKAQ+
Sbjct: 241 PAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQE 300
Query: 356 FVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREI 391
+VC L P+IRRLEERAQGRAK+A +PFSW+F R++
Sbjct: 301 YVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQV 336
>pdb|2UW1|B Chain B, Ivy Desaturase Structure
Length = 338
Score = 556 bits (1433), Expect = e-159, Method: Compositional matrix adjust.
Identities = 258/336 (76%), Positives = 297/336 (88%)
Query: 56 VQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRE 115
+QVTHSMP QK+EIFKSL+ WA N+L+HLK VEK WQP DYLP+P S+GF EQV+ELRE
Sbjct: 1 MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRE 60
Query: 116 RCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENR 175
R KEIPDDYFVVLVGDMITEEALPTY +MLN DG++DETGA ++WA+WTRAWTAEENR
Sbjct: 61 RAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENR 120
Query: 176 HGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGN 235
HGDLLNKYLYLSGRVDM++IEKTIQYLIGSGMD K+EN+PYLGFIYTSFQERATFISH N
Sbjct: 121 HGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHAN 180
Query: 236 TARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISM 295
TA+ A+ +GD LA ICG IASDEKRH TAYTKIVEKL EIDPD TV+A ADMM+KKI+M
Sbjct: 181 TAKLAQHWGDKNLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM 240
Query: 296 PAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQD 355
PAHLMYDG D+ LF+HF+ VAQR+GVY+A DY DILEFLV +WNVE+LTGLS EGRKAQ+
Sbjct: 241 PAHLMYDGSDELLFKHFTAVAQRVGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQE 300
Query: 356 FVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREI 391
+VC L P+IRRLEERAQGRAK+A +PFSW+F R++
Sbjct: 301 YVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQV 336
>pdb|1ZA0|A Chain A, X-Ray Structure Of Putative Acyl-Acp Desaturase Desa2 From
Mycobacterium Tuberculosis H37rv
Length = 275
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 162 WAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKT-IQYLIGSGMDPKTENNPYLGFI 220
W W WTAEE+ H L +YL ++ VD E +Q+++ K L +
Sbjct: 96 WGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRAEKYTQVETL--V 153
Query: 221 YTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG 280
Y +F ER + N A +E LA + IA DE RHE + +V + D
Sbjct: 154 YMAFYERCGAVFCRNLAAQIEEP---ILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDE 210
Query: 281 T 281
T
Sbjct: 211 T 211
>pdb|3K55|A Chain A, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|B Chain B, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|C Chain C, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|D Chain D, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|E Chain E, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|F Chain F, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|G Chain G, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|H Chain H, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|I Chain I, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|J Chain J, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|K Chain K, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|L Chain L, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|M Chain M, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|N Chain N, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|O Chain O, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|P Chain P, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
Length = 306
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 108 EQVKELRE--RCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 165
EQ+KE+ + + K IP D V + GD+ + P ++ ML L+ V D +A
Sbjct: 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLN-VND------VLYAGH 241
Query: 166 TRAWTAEENRHGDLLNKYLYLSGR 189
W + N + KY Y +G+
Sbjct: 242 NSTWDPQSNS----IAKYNYPNGK 261
>pdb|3I5V|A Chain A, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
pdb|3I5V|B Chain B, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
pdb|3I5V|C Chain C, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
pdb|3I5V|D Chain D, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
Length = 313
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 108 EQVKELRE--RCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 165
EQ+KE+ + + K IP D V + GD+ + P ++ ML L+ V D +A
Sbjct: 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLN-VND------VLYAGH 241
Query: 166 TRAWTAEENRHGDLLNKYLYLSGR 189
W + N + KY Y +G+
Sbjct: 242 NSTWDPQSNS----IAKYNYPNGK 261
>pdb|3I41|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant
pdb|3I41|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant
pdb|3I46|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Calcium Ions
pdb|3I46|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Calcium Ions
pdb|3I48|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Magnesium Ions
pdb|3I48|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Magnesium Ions
Length = 317
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 108 EQVKELRE--RCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 165
EQ+KE+ + + K IP D V + GD+ + P ++ ML L+ V D +A
Sbjct: 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLN-VND------VLYAGH 241
Query: 166 TRAWTAEENRHGDLLNKYLYLSGR 189
W + N + KY Y +G+
Sbjct: 242 NSTWDPQSNS----IAKYNYPNGK 261
>pdb|1VQQ|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1VQQ|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|4DKI|A Chain A, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
pdb|4DKI|B Chain B, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
Length = 646
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 142 QTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQ 194
Q +L + G+ ++T TS+ I + W +++ G + +Y ++G +D+KQ
Sbjct: 383 QKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ 435
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution
Length = 646
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 142 QTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQ 194
Q +L + G+ ++T TS+ I + W +++ G + +Y ++G +D+KQ
Sbjct: 383 QKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ 435
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 142 QTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQ 194
Q +L G+ ++T TS+ I + W +++ G + +Y ++G +D+KQ
Sbjct: 383 QKILTAXIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ 435
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 32/142 (22%)
Query: 185 YLSGRVDMKQIEKTIQYLIGSGMDP-----KTENNPYLGFIYTSFQERATFISHGNTARH 239
+ G VD + + I++ + +G D T +P L +F+E I R
Sbjct: 13 FKEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTL-----TFEEHEKVIEFA-VKRA 66
Query: 240 AKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHL 299
A G +K+ G A+ E H TA+ K E+ DG ++ + K
Sbjct: 67 A---GRIKVIAGTGGNATHEAVHLTAHAK------EVGADGALVVVPYYNKPT------- 110
Query: 300 MYDGRDDNLFEHFSTVAQRLGV 321
L+EHF TVAQ + +
Sbjct: 111 -----QRGLYEHFKTVAQEVDI 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,877,324
Number of Sequences: 62578
Number of extensions: 513450
Number of successful extensions: 1164
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 14
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)