Query 016230
Match_columns 393
No_of_seqs 201 out of 423
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00179 acyl- [acyl-carrier p 100.0 8E-138 2E-142 1027.8 33.9 353 41-393 36-390 (390)
2 PF03405 FA_desaturase_2: Fatt 100.0 2E-121 4E-126 904.5 21.4 329 63-391 1-330 (330)
3 cd01050 Acyl_ACP_Desat Acyl AC 100.0 3E-103 6E-108 767.5 28.7 297 65-371 1-297 (297)
4 cd00657 Ferritin_like Ferritin 98.9 2.6E-08 5.6E-13 79.8 11.1 126 128-269 3-129 (130)
5 PF11583 AurF: P-aminobenzoate 97.7 0.00034 7.4E-09 68.5 12.0 206 64-290 6-244 (304)
6 cd01049 RNRR2 Ribonucleotide R 97.3 0.0072 1.6E-07 58.6 14.7 179 89-290 20-225 (288)
7 cd01041 Rubrerythrin Rubreryth 97.2 0.0074 1.6E-07 52.5 11.9 99 159-272 32-132 (134)
8 cd01055 Nonheme_Ferritin nonhe 97.1 0.0089 1.9E-07 52.8 12.4 109 159-277 34-143 (156)
9 cd01045 Ferritin_like_AB Uncha 96.8 0.02 4.3E-07 47.8 11.2 121 137-269 13-138 (139)
10 PF02915 Rubrerythrin: Rubrery 96.8 0.0014 3E-08 55.0 3.8 101 162-269 31-136 (137)
11 cd01046 Rubrerythrin_like rubr 96.8 0.014 3E-07 50.7 10.1 92 159-274 32-123 (123)
12 cd07911 RNRR2_Rv0233_like Ribo 96.5 0.098 2.1E-06 51.2 15.4 175 89-289 18-219 (280)
13 cd07908 Mn_catalase_like Manga 96.5 0.021 4.5E-07 50.7 9.7 104 159-269 46-153 (154)
14 PF00210 Ferritin: Ferritin-li 96.5 0.053 1.1E-06 45.7 11.6 108 158-273 29-139 (142)
15 PRK08326 ribonucleotide-diphos 96.4 0.05 1.1E-06 54.4 12.9 167 88-279 35-229 (311)
16 cd00907 Bacterioferritin Bacte 96.3 0.15 3.3E-06 44.5 13.9 111 159-281 36-147 (153)
17 PF00268 Ribonuc_red_sm: Ribon 96.3 0.14 3E-06 50.0 14.8 159 90-276 29-211 (281)
18 cd01051 Mn_catalase Manganese 96.1 0.089 1.9E-06 47.9 11.5 56 214-272 99-154 (156)
19 PF02915 Rubrerythrin: Rubrery 96.1 0.017 3.7E-07 48.4 6.3 53 220-273 4-56 (137)
20 PRK10635 bacterioferritin; Pro 96.0 0.12 2.6E-06 47.1 11.9 104 159-273 37-141 (158)
21 PRK07209 ribonucleotide-diphos 95.7 0.61 1.3E-05 47.8 16.8 168 89-279 68-268 (369)
22 PRK09614 nrdF ribonucleotide-d 95.7 0.2 4.3E-06 50.1 12.9 168 89-280 31-219 (324)
23 COG1633 Uncharacterized conser 95.3 0.33 7.1E-06 45.2 12.2 139 125-275 26-171 (176)
24 PTZ00211 ribonucleoside-diphos 95.3 0.66 1.4E-05 46.7 15.2 163 90-279 42-227 (330)
25 COG0208 NrdF Ribonucleotide re 95.2 0.64 1.4E-05 47.8 14.9 184 75-289 35-251 (348)
26 cd01052 DPSL DPS-like protein, 95.0 0.28 6.1E-06 42.6 10.4 108 158-269 36-147 (148)
27 PRK12759 bifunctional gluaredo 94.9 0.69 1.5E-05 48.1 14.6 163 90-279 118-302 (410)
28 cd01044 Ferritin_CCC1_N Ferrit 94.7 0.06 1.3E-06 46.4 5.2 46 225-273 9-54 (125)
29 TIGR00754 bfr bacterioferritin 94.5 0.94 2E-05 40.4 12.6 106 159-274 37-142 (157)
30 cd01056 Euk_Ferritin eukaryoti 94.2 0.26 5.6E-06 44.3 8.3 110 159-277 36-147 (161)
31 PRK13965 ribonucleotide-diphos 93.9 2.7 5.8E-05 42.7 15.8 164 90-272 45-221 (335)
32 PRK13967 nrdF1 ribonucleotide- 93.5 3.2 6.9E-05 41.9 15.4 159 89-274 31-210 (322)
33 cd01041 Rubrerythrin Rubreryth 93.2 0.51 1.1E-05 41.0 8.1 95 225-331 12-116 (134)
34 PF02332 Phenol_Hydrox: Methan 93.1 2.5 5.3E-05 40.7 13.5 146 123-279 74-233 (233)
35 PF13668 Ferritin_2: Ferritin- 92.9 1.6 3.5E-05 37.7 10.9 98 159-271 37-136 (137)
36 PRK13966 nrdF2 ribonucleotide- 92.7 8.9 0.00019 38.8 17.4 171 89-279 33-217 (324)
37 cd01046 Rubrerythrin_like rubr 92.6 1 2.2E-05 39.1 9.1 88 225-326 12-99 (123)
38 PRK10304 ferritin; Provisional 92.2 1.8 3.9E-05 39.7 10.7 104 159-272 36-143 (165)
39 PLN02492 ribonucleoside-diphos 92.0 3.5 7.5E-05 41.5 13.4 163 89-278 30-215 (324)
40 cd01045 Ferritin_like_AB Uncha 91.5 0.49 1.1E-05 39.4 5.8 48 224-274 8-55 (139)
41 cd00657 Ferritin_like Ferritin 90.4 0.98 2.1E-05 35.7 6.3 50 222-274 6-55 (130)
42 PRK09101 nrdB ribonucleotide-d 90.2 7.6 0.00017 40.1 14.1 182 75-279 35-261 (376)
43 cd01057 AAMH_A Aromatic and Al 90.1 14 0.00031 39.4 16.4 140 128-279 83-235 (465)
44 PF04305 DUF455: Protein of un 88.5 6.8 0.00015 38.6 11.8 50 241-290 176-225 (253)
45 COG1592 Rubrerythrin [Energy p 88.0 2.6 5.6E-05 39.3 8.0 81 230-320 20-100 (166)
46 cd07908 Mn_catalase_like Manga 87.1 1.4 3E-05 39.1 5.6 55 222-278 24-78 (154)
47 cd07910 MiaE MiaE tRNA-modifyi 86.8 4.3 9.4E-05 38.3 8.8 109 160-275 48-160 (180)
48 COG1633 Uncharacterized conser 86.2 2 4.3E-05 40.0 6.3 61 214-277 24-84 (176)
49 TIGR02029 AcsF magnesium-proto 84.5 1.8 3.9E-05 44.2 5.4 46 226-272 85-130 (337)
50 cd01043 DPS DPS protein, ferri 84.3 14 0.00029 32.0 10.3 113 155-268 25-137 (139)
51 cd00904 Ferritin Ferritin iron 83.1 9.6 0.00021 34.3 9.1 107 159-274 36-144 (160)
52 PRK13456 DNA protection protei 82.1 39 0.00085 32.2 13.0 143 122-280 19-168 (186)
53 cd01044 Ferritin_CCC1_N Ferrit 81.7 5.6 0.00012 34.2 6.8 98 160-271 27-124 (125)
54 CHL00185 ycf59 magnesium-proto 81.1 2.7 5.9E-05 43.1 5.2 45 226-271 91-135 (351)
55 cd01047 ACSF Aerobic Cyclase S 81.0 2.7 5.8E-05 42.7 5.1 47 225-272 74-120 (323)
56 TIGR02029 AcsF magnesium-proto 80.8 2.5 5.5E-05 43.1 4.9 106 140-257 165-270 (337)
57 PRK13654 magnesium-protoporphy 80.3 2.9 6.3E-05 43.0 5.2 43 229-272 98-140 (355)
58 cd01058 AAMH_B Aromatic and Al 80.1 22 0.00047 35.8 11.3 142 126-279 103-260 (304)
59 PRK12775 putative trifunctiona 79.9 26 0.00056 40.8 13.2 151 112-277 849-1002(1006)
60 cd01047 ACSF Aerobic Cyclase S 79.9 2.2 4.9E-05 43.2 4.2 106 140-257 155-260 (323)
61 PLN02508 magnesium-protoporphy 79.4 2.9 6.2E-05 42.9 4.8 43 229-272 94-136 (357)
62 COG4445 MiaE Hydroxylase for s 78.8 5.6 0.00012 37.5 6.1 119 166-293 64-188 (203)
63 PF05138 PaaA_PaaC: Phenylacet 78.6 5.8 0.00013 39.1 6.6 157 167-342 53-225 (263)
64 PLN02508 magnesium-protoporphy 78.0 2.8 6.1E-05 43.0 4.3 35 159-197 190-224 (357)
65 PF06175 MiaE: tRNA-(MS[2]IO[6 77.7 5.5 0.00012 39.2 6.0 149 95-277 61-213 (240)
66 cd01048 Ferritin_like_AB2 Unch 77.4 11 0.00024 33.2 7.5 91 170-268 36-133 (135)
67 CHL00185 ycf59 magnesium-proto 76.9 3.5 7.7E-05 42.3 4.6 86 159-256 190-275 (351)
68 PRK13654 magnesium-protoporphy 74.9 2.6 5.7E-05 43.3 3.1 54 140-197 175-228 (355)
69 PF00268 Ribonuc_red_sm: Ribon 74.2 25 0.00055 34.3 9.7 90 167-280 29-118 (281)
70 PRK15022 ferritin-like protein 69.8 80 0.0017 29.3 11.4 106 159-274 36-142 (167)
71 cd07911 RNRR2_Rv0233_like Ribo 67.7 31 0.00068 33.8 8.8 32 243-274 75-106 (280)
72 PRK12775 putative trifunctiona 66.4 9.3 0.0002 44.3 5.5 48 222-272 868-915 (1006)
73 cd01048 Ferritin_like_AB2 Unch 64.1 9.3 0.0002 33.7 3.9 50 218-273 4-53 (135)
74 cd01055 Nonheme_Ferritin nonhe 59.7 26 0.00057 30.7 6.0 48 225-272 14-61 (156)
75 PF05067 Mn_catalase: Manganes 58.6 87 0.0019 31.7 10.0 112 163-277 56-198 (283)
76 COG1592 Rubrerythrin [Energy p 56.5 20 0.00043 33.5 4.8 43 233-275 89-131 (166)
77 cd00907 Bacterioferritin Bacte 53.6 33 0.00071 29.8 5.6 47 226-272 17-63 (153)
78 PF13763 DUF4167: Domain of un 52.5 33 0.00072 28.5 5.0 35 233-274 42-76 (80)
79 COG1528 Ftn Ferritin-like prot 50.0 1.4E+02 0.003 28.1 9.2 111 159-279 36-147 (167)
80 cd01050 Acyl_ACP_Desat Acyl AC 46.2 68 0.0015 32.5 7.1 80 216-297 61-144 (297)
81 COG2833 Uncharacterized protei 46.0 2.9E+02 0.0063 27.7 11.1 81 236-332 180-264 (268)
82 TIGR03225 benzo_boxB benzoyl-C 44.6 1.1E+02 0.0024 32.5 8.5 195 65-276 15-256 (471)
83 cd01052 DPSL DPS-like protein, 43.3 91 0.002 26.8 6.7 61 226-287 18-78 (148)
84 COG2186 FadR Transcriptional r 42.4 59 0.0013 31.3 5.9 61 227-290 149-225 (241)
85 cd01051 Mn_catalase Manganese 41.6 62 0.0013 29.5 5.5 55 219-275 28-82 (156)
86 TIGR02158 PA_CoA_Oxy3 phenylac 41.1 2.8E+02 0.006 27.3 10.2 117 169-290 31-153 (237)
87 PRK08326 ribonucleotide-diphos 39.5 51 0.0011 33.1 5.1 40 234-273 80-122 (311)
88 PF06667 PspB: Phage shock pro 38.3 46 0.001 27.3 3.7 40 330-374 22-61 (75)
89 cd01049 RNRR2 Ribonucleotide R 37.9 57 0.0012 31.7 5.0 33 243-275 74-106 (288)
90 PRK09458 pspB phage shock prot 35.6 46 0.00099 27.4 3.3 39 331-374 23-61 (75)
91 COG3396 Uncharacterized conser 34.9 54 0.0012 32.9 4.3 79 246-348 46-128 (265)
92 cd01042 DMQH Demethoxyubiquino 33.9 91 0.002 29.0 5.4 37 243-280 26-62 (165)
93 smart00337 BCL BCL (B-Cell lym 32.1 73 0.0016 26.7 4.1 31 259-290 9-39 (100)
94 PF09968 DUF2202: Uncharacteri 28.7 3E+02 0.0064 25.8 7.8 91 171-272 36-140 (162)
95 COG2193 Bfr Bacterioferritin ( 27.8 4.1E+02 0.0088 24.8 8.4 101 160-271 38-139 (157)
96 TIGR00865 bcl-2 Apoptosis regu 27.1 1.3E+02 0.0027 29.2 5.3 32 259-291 79-110 (213)
97 TIGR02156 PA_CoA_Oxy1 phenylac 26.5 6.9E+02 0.015 25.3 14.0 154 170-341 63-233 (289)
98 COG2406 Protein distantly rela 26.3 5.5E+02 0.012 24.1 9.4 104 165-272 54-161 (172)
99 TIGR02976 phageshock_pspB phag 25.3 1E+02 0.0022 25.3 3.6 40 330-374 22-61 (75)
100 PF13668 Ferritin_2: Ferritin- 24.8 2.1E+02 0.0046 24.5 5.9 29 243-271 35-63 (137)
101 PF04305 DUF455: Protein of un 24.8 56 0.0012 32.3 2.5 21 253-273 105-125 (253)
102 KOG1248 Uncharacterized conser 24.2 3.1E+02 0.0067 33.0 8.4 104 245-374 826-930 (1176)
103 PF11583 AurF: P-aminobenzoate 23.8 1.4E+02 0.0031 29.2 5.2 30 245-274 111-140 (304)
104 PF00452 Bcl-2: Apoptosis regu 23.6 1.7E+02 0.0036 23.9 4.7 32 259-290 9-40 (101)
105 PF12902 Ferritin-like: Ferrit 22.9 1.5E+02 0.0033 28.7 5.0 49 225-273 7-55 (227)
106 PF05974 DUF892: Domain of unk 22.7 1.9E+02 0.0041 26.2 5.3 47 226-272 106-152 (159)
107 PRK07209 ribonucleotide-diphos 22.1 1.7E+02 0.0038 30.1 5.6 38 242-280 124-161 (369)
108 PRK10421 DNA-binding transcrip 22.0 2.9E+02 0.0063 26.2 6.8 60 228-290 141-218 (253)
109 KOG4326 Mitochondrial F1F0-ATP 20.3 2.2E+02 0.0048 23.5 4.6 47 216-262 21-70 (81)
110 COG4902 Uncharacterized protei 20.2 87 0.0019 29.3 2.6 57 217-280 52-108 (189)
111 PRK09614 nrdF ribonucleotide-d 20.1 1.6E+02 0.0035 29.4 4.7 32 242-273 84-115 (324)
No 1
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=100.00 E-value=7.6e-138 Score=1027.83 Aligned_cols=353 Identities=85% Similarity=1.355 Sum_probs=346.3
Q ss_pred ccCCCCCCCCCccccccccCCCCchhHHHHHHhHHHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCC
Q 016230 41 VGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEI 120 (393)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~~~Le~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~L 120 (393)
....++++.+|.+++.|++|||||+|+|||++||+||++||++||||+|++|||||||||++|+||+++|++||+++++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~~~~~F~~~v~~lr~~~~~L 115 (390)
T PLN00179 36 VEAAKKPFAPPREVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDPASEGFYDQVKELRERAAEL 115 (390)
T ss_pred hhhccccCCCchhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCCccCChHHHHhhhhHhhcCC
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHH
Q 016230 121 PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQ 200 (393)
Q Consensus 121 pdd~~v~Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~ 200 (393)
||++++||||||||||||||||++||++||++|+||+++++|++|+++||||||||||+||+||||||+|||+++|+++|
T Consensus 116 pd~~~v~LvgdmiTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q 195 (390)
T PLN00179 116 PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQ 195 (390)
T ss_pred ChhhhhhhhhcchhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016230 201 YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG 280 (393)
Q Consensus 201 ~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 280 (393)
|+|++||+|+++++||++|+||||||+||+|||+||||+|+++|||+|++||++||+||+||+.||+++|+++||+|||+
T Consensus 196 ~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~ 275 (390)
T PLN00179 196 YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG 275 (390)
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcccCCCCCccchhhHHHHHHHHhcCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcC
Q 016230 281 TVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGL 360 (393)
Q Consensus 281 tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~savaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l 360 (393)
||.||++||+|||+||||+|+||+|++||++|++++||+||||+.||.|||++||++|+|++|+|||+||+|||||||+|
T Consensus 276 tm~Aiadmm~~ki~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l 355 (390)
T PLN00179 276 AVLAFADMMRKKITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGL 355 (390)
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHh
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhchhhcC--CCcCceeecCCcccC
Q 016230 361 PPRIRRLEERAQGRAKQA--SAVPFSWVFGREIIV 393 (393)
Q Consensus 361 ~~r~~r~~er~~~~~~~~--~~~~f~wi~~~~~~~ 393 (393)
|+||+||+||++.|+|+. ..++|||||+|+|.|
T Consensus 356 ~~rirr~~era~~~~~~~~~~~~~fsWi~~r~v~~ 390 (390)
T PLN00179 356 PPRIRRLEERAQDRAKKAKPPSIPFSWIFDREVRL 390 (390)
T ss_pred HHHHHHHHHHHhhHHhccCCCCCceeeecCCccCC
Confidence 999999999999999875 378999999999975
No 2
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=100.00 E-value=1.9e-121 Score=904.46 Aligned_cols=329 Identities=58% Similarity=0.977 Sum_probs=292.7
Q ss_pred CchhHHHHHHhHHHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHHHhhcccchhHH
Q 016230 63 PQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQ 142 (393)
Q Consensus 63 ~~~~~ev~~~Le~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~miTEd~LPtY~ 142 (393)
||+|+|||++||+||++||++||+|++++|||||||||++|+||..++++|||+|++|||++++||++||||||||||||
T Consensus 1 ~~~~~evl~~Le~~v~~~~~~~l~~~~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPsY~ 80 (330)
T PF03405_consen 1 PPEKLEVLRELEPVVEENLLRHLKPVEKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPSYH 80 (330)
T ss_dssp -GGGHHHHHHCHHHHHHHCHHHCH-CGGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHhhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhHHH
Confidence 68999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhh
Q 016230 143 TMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYT 222 (393)
Q Consensus 143 ~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYt 222 (393)
++|+++||++|++|+++++|++|+++|||||||||++||+|||+||+|||+++|++++++|+.||+++++++|+++|+|+
T Consensus 81 ~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vYt 160 (330)
T PF03405_consen 81 RELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGFDPGFESDPYLGFVYT 160 (330)
T ss_dssp HHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH----S-TTHHHHHHHHH
T ss_pred HHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred hhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhccCCCcccCCC
Q 016230 223 SFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYD 302 (393)
Q Consensus 223 sfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~d 302 (393)
||||+||++||+|||++|+.+|||||++||++||+||+||+.||+++|+++|++|||++|.||++||+++|+|||++|+|
T Consensus 161 sfQE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~t~~Ai~~vm~~~f~MPg~~m~d 240 (330)
T PF03405_consen 161 SFQERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDGTMLAIADVMRNKFRMPGHLMPD 240 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH----TTTT---
T ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhccCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999779999999999
Q ss_pred CCccchhhHHHHHHHHhcCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHHHHhchhhcC-CCc
Q 016230 303 GRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQA-SAV 381 (393)
Q Consensus 303 g~~~~lf~~~savaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~-~~~ 381 (393)
|+|+++|++|++++|++||||+.+|.+|+++||++|+|++++|||++|++||||||+||.|++||+||++.++++. ..+
T Consensus 241 g~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~~~~~ 320 (330)
T PF03405_consen 241 GRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERADRRAARMAKPV 320 (330)
T ss_dssp SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTSTTTSSS--EE
T ss_pred CcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998766 478
Q ss_pred CceeecCCcc
Q 016230 382 PFSWVFGREI 391 (393)
Q Consensus 382 ~f~wi~~~~~ 391 (393)
+|||||||+|
T Consensus 321 ~fswif~r~v 330 (330)
T PF03405_consen 321 PFSWIFNREV 330 (330)
T ss_dssp E-GGGTT-EE
T ss_pred ceeeecCCCC
Confidence 9999999987
No 3
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=100.00 E-value=3e-103 Score=767.54 Aligned_cols=297 Identities=67% Similarity=1.066 Sum_probs=288.1
Q ss_pred hhHHHHHHhHHHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHHHhhcccchhHHHH
Q 016230 65 QKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTM 144 (393)
Q Consensus 65 ~~~ev~~~Le~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~miTEd~LPtY~~~ 144 (393)
.|+|||++|||||++|++++|+|++++|||||||||++++||..++++||+++++|||+++++|+++||||||||+||++
T Consensus 1 ~~~el~~~le~~~~~~~~~~~~~~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~~~ 80 (297)
T cd01050 1 TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYHSM 80 (297)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccHhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHHHH
Confidence 37899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhh
Q 016230 145 LNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSF 224 (393)
Q Consensus 145 L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsf 224 (393)
||++||++++ ++++|++|+++||+||||||++|++||++||+|||+++|++++++++.||+++++++||++|+|+||
T Consensus 81 L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~~~~~~~~~~~~~~y~~f 157 (297)
T cd01050 81 LNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVYTSF 157 (297)
T ss_pred HHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Confidence 9999999766 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhccCCCcccCCCCC
Q 016230 225 QERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGR 304 (393)
Q Consensus 225 QE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~ 304 (393)
||+||++||+|||++++ +|||||++||++||+||+||++||+++|+++|++||+++|.||++||+ +|+|||++|.
T Consensus 158 qE~aT~v~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~~~~Ai~~v~~-~~~MP~~~~~--- 232 (297)
T cd01050 158 QELATRISHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDGAVLAFADMMR-KIVMPGHLMY--- 232 (297)
T ss_pred HHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH-hCCCChhhhh---
Confidence 99999999999999988 899999999999999999999999999999999999999999999997 6999999995
Q ss_pred ccchhhHHHHHHHHhcCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHHHH
Q 016230 305 DDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERA 371 (393)
Q Consensus 305 ~~~lf~~~savaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~ 371 (393)
++|++|+++||++||||+.+|++||++++++|+|++++|||+||+|||||||+||+|++|++||+
T Consensus 233 --~~f~~~~~~~a~~gvY~~~~~~~V~~~~~~~w~v~~l~~l~~eg~~ar~~~~~l~~~~~~~~~r~ 297 (297)
T cd01050 233 --PLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALPARLRRLAERA 297 (297)
T ss_pred --hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 34789999999999999999999999999999999999999999999999999999999999873
No 4
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.88 E-value=2.6e-08 Score=79.75 Aligned_cols=126 Identities=21% Similarity=0.182 Sum_probs=91.8
Q ss_pred HHHHHhhc-ccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcC
Q 016230 128 LVGDMITE-EALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSG 206 (393)
Q Consensus 128 Lv~~miTE-d~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G 206 (393)
|...+..| .+.-.|........ +..+..+...|..||.+|.+.|.+++.--|...+..... ....+
T Consensus 3 L~~~~~~E~~a~~~y~~~~~~~~---------~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~----~~~~~ 69 (130)
T cd00657 3 LNDALAGEYAAIIAYGQLAARAP---------DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH----LLAAY 69 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHhc
Confidence 34444455 33344554443332 678899999999999999999999996545443333222 12222
Q ss_pred CCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHH
Q 016230 207 MDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269 (393)
Q Consensus 207 ~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 269 (393)
.......++...+.+....|..+...|.++.+. ..|+.+++++..|+.||.+|..+++++
T Consensus 70 ~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~---~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 70 ALPKTSDDPAEALRAALEVEARAIAAYRELIEQ---ADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334578889999999999999999999875 449999999999999999999999875
No 5
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=97.74 E-value=0.00034 Score=68.54 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=123.2
Q ss_pred chhHHHH-HHhHHHHHHHh---Hhhcc-----------ccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHH---
Q 016230 64 QQKMEIF-KSLEGWAEENI---LVHLK-----------PVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYF--- 125 (393)
Q Consensus 64 ~~~~ev~-~~Le~~v~~~~---~~hl~-----------~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~--- 125 (393)
++.-+++ +-++.|++..- ++.+. +..+.|.|.+++|--.-+-| ..||++.+
T Consensus 6 ~~~~~~~~rL~~~~~~r~~v~~dp~~didWd~~~~~~~~~~~~~~p~~~~pl~gtp~~-----------~~l~~~~r~~l 74 (304)
T PF11583_consen 6 PDREETLQRLLESWARRSYVRSDPETDIDWDAPDDEDFDPDRPWLPPELLPLYGTPLW-----------ERLSEEQRIEL 74 (304)
T ss_dssp ----HHHHHHHHHHHHH-HHHHSTTGG------GGTT--TTS-SS-GGGSTTTT-HHH-----------HTS-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccCCchhhhhhhhhhcccCCCcccCCCcccCccCCCHHH-----------HhCCHHHHHHH
Confidence 3444555 44568888887 55521 24555666666664332222 23555444
Q ss_pred ------HHHHHHHhhcccch--hHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCC-------C
Q 016230 126 ------VVLVGDMITEEALP--TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGR-------V 190 (393)
Q Consensus 126 ------v~Lv~~miTEd~LP--tY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgr-------v 190 (393)
..+...+..|..|- .....+...++.. .+.+...+.-+...||++|...-.+|+-.+|+ .
T Consensus 75 ~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~ 149 (304)
T PF11583_consen 75 LRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSD-----PDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLP 149 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTT-----T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCC
Confidence 34455666776665 3344444555431 13456777889999999999999999977661 1
Q ss_pred ChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHH
Q 016230 191 DMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIV 270 (393)
Q Consensus 191 Dp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv 270 (393)
.+....+... .+.....+. ..+...|+..++-|.....+.+.+.+ ...-.|.++++++....||+||..|+..++
T Consensus 150 ~~~~~~~~~~-~l~~~~~~~--~~~~~~~~~~lv~Ee~i~~~~~~~~~--D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l 224 (304)
T PF11583_consen 150 PPYPPRRLLR-RLARLLPPW--ERGLLFFAFALVAEEIIDAYQREIAR--DETIQPLVRQVMRIHVRDEARHIAFAREEL 224 (304)
T ss_dssp --HHHHHHHH-HHHTS-SHH--HHHHHHHHHHHHHHHSBHHHHHHHHT---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHH-HHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 223222221 12456788888888887776665544 122379999999999999999999999999
Q ss_pred HHHHhhCCchHHHHHHHHHH
Q 016230 271 EKLFEIDPDGTVMALADMMK 290 (393)
Q Consensus 271 ~~~le~dPd~tm~Aia~mm~ 290 (393)
+.....-+......++..+.
T Consensus 225 ~~~~~~l~~~~r~~~~~~l~ 244 (304)
T PF11583_consen 225 RRVWPRLSPAERRALAELLP 244 (304)
T ss_dssp HHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 99999998877777777665
No 6
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=97.30 E-value=0.0072 Score=58.65 Aligned_cols=179 Identities=16% Similarity=0.147 Sum_probs=109.1
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHH--------HHHHHhhcccchhHHHHhhhhcCCcccCCCCch
Q 016230 89 EKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVV--------LVGDMITEEALPTYQTMLNTLDGVRDETGASLT 160 (393)
Q Consensus 89 e~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~--------Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~ 160 (393)
..-|.|.+ +|.+. ..++|.. ||++-+.+ ..++.++-+++...-... . ..+
T Consensus 20 ~~~W~p~e-i~~~~------D~~~~~~----l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~---~--------~~~ 77 (288)
T cd01049 20 ANFWTPEE-IDLSK------DLKDWEK----LTEAERHFIKRVLAFLAALDSIVGENLVELFSRH---V--------QIP 77 (288)
T ss_pred HcCCChhh-cchhh------hHHHHhH----CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---c--------ChH
Confidence 35899999 65543 3445543 45544433 234555555554333221 1 156
Q ss_pred hHhHHhhhchhhhhhhhHHHHhHHhHcCCCC-hHh----------hHHHHHHHhhcCCCCC---CCCCchhhHhhhhhhh
Q 016230 161 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVD-MKQ----------IEKTIQYLIGSGMDPK---TENNPYLGFIYTSFQE 226 (393)
Q Consensus 161 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvD-p~~----------lE~t~~~li~~G~d~~---~~~~p~~~~vYtsfQE 226 (393)
+...+...+.++|+.|+.+-..++-.-+.-+ ... +.+. ...+...|+-. +..+.+..++.-.+.|
T Consensus 78 e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~~e~~~~~~~~~~~~~l~~k-~~~~~~~~~~~~~~~~~~~~~~lv~~~~lE 156 (288)
T cd01049 78 EARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAIETDPALKKK-ADWILRWYDNLDDNTKESFAERLVAFAILE 156 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhcCHHHHHH-HHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 7778899999999999999999883322210 111 1111 22222223221 1123455555447888
Q ss_pred hhhH-HHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc----hHHHHHHHHHH
Q 016230 227 RATF-ISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD----GTVMALADMMK 290 (393)
Q Consensus 227 ~AT~-ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd----~tm~Aia~mm~ 290 (393)
..-+ .++..+-.+++..-=|-++++...|.+||.+|..|...++..++...|. .....+.++++
T Consensus 157 gi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~ 225 (288)
T cd01049 157 GIFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIK 225 (288)
T ss_pred HHHHHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHH
Confidence 7766 3455555555433358899999999999999999999999999998885 33444555554
No 7
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=97.17 E-value=0.0074 Score=52.53 Aligned_cols=99 Identities=25% Similarity=0.141 Sum_probs=79.0
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHH-hHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhh-hHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERA-TFISHGNT 236 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~A-T~ish~nt 236 (393)
....+.|.+.=..||..|+..+.+|+ -+.|.++ .. +...++....|-..-=.|.. +...|.++
T Consensus 32 ~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~------------~~---~~~~~~~~~~l~~~~~~E~~e~~~~y~~~ 96 (134)
T cd01041 32 YEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT------------GP---PIGIGDTLENLKAAIAGETYEYTEMYPEF 96 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------CC---CCCcchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788999988999999999999999 4444444 00 11112455667677778885 66789999
Q ss_pred HhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 237 ARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 237 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
.++|...||...+.+...|+.||..|...|.+.++.
T Consensus 97 ~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 97 AEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998765
No 8
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.15 E-value=0.0089 Score=52.78 Aligned_cols=109 Identities=22% Similarity=0.161 Sum_probs=87.9
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhH-cCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~l-sgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
.+.++.|.+....||-.|+..+-+|+.. -|.++...+.... ....++...+-...-.|+.....|.++.
T Consensus 34 ~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~----------~~~~~~~~~l~~al~~E~~~~~~~~~l~ 103 (156)
T cd01055 34 LDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPP----------SEFESLLEVFEAALEHEQKVTESINNLV 103 (156)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCC----------cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999954 3455544433210 0123566777777778888888999999
Q ss_pred hHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhC
Q 016230 238 RHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEID 277 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 277 (393)
++|...||++...++..|..||..|...|.+++..+-...
T Consensus 104 ~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~~~g 143 (156)
T cd01055 104 DLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLKLAG 143 (156)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998766553
No 9
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=96.82 E-value=0.02 Score=47.83 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=78.9
Q ss_pred cchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcC--CCChHhhHHHHHHHhhcCC---CCCC
Q 016230 137 ALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSG--RVDMKQIEKTIQYLIGSGM---DPKT 211 (393)
Q Consensus 137 ~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsg--rvDp~~lE~t~~~li~~G~---d~~~ 211 (393)
+.-.|.+...... +..-..+...=..||-+|.+.|...+.--+ .+.+..............+ ....
T Consensus 13 ~~~~Y~~~a~~~~---------~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (139)
T cd01045 13 AAEFYLELAEKAK---------DPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALES 83 (139)
T ss_pred HHHHHHHHHhHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHh
Confidence 3445665544433 346677888888999999999999985543 2221111111111111100 0111
Q ss_pred CCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHH
Q 016230 212 ENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269 (393)
Q Consensus 212 ~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 269 (393)
..++...+-..---|.....+|.++++ ..+||..+.++..|+.||.+|...+.++
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~---~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAE---KAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235566777777788888889998866 4779999999999999999999988764
No 10
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.78 E-value=0.0014 Score=55.03 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=64.5
Q ss_pred HhHHhhhchhhhhhhhHHHHhHHhH-cCCCChHhhHHHHHHHhhcCCCCCCCCC---chhhHhhhhhh-hhhhHHHHHHH
Q 016230 162 WAIWTRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKTIQYLIGSGMDPKTENN---PYLGFIYTSFQ-ERATFISHGNT 236 (393)
Q Consensus 162 W~~Wv~~WTAEEnRHG~aLr~YL~l-sgrvDp~~lE~t~~~li~~G~d~~~~~~---p~~~~vYtsfQ-E~AT~ish~nt 236 (393)
-..-...=..+|-+|...|.+.+-- .+..+|...... +..-+.+..... .+...+..+.+ |.-+..+|..+
T Consensus 31 ~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~ 106 (137)
T PF02915_consen 31 LKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEK----VEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAEL 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCC----CCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhh----hhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677899999999988832 223333311111 111111111111 13445555555 77778888877
Q ss_pred HhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHH
Q 016230 237 ARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269 (393)
Q Consensus 237 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 269 (393)
++ ..+||..++++..|+.||.+|...|.++
T Consensus 107 a~---~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 107 AR---KAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HH---HTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 6889999999999999999999999876
No 11
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=96.78 E-value=0.014 Score=50.65 Aligned_cols=92 Identities=21% Similarity=0.186 Sum_probs=75.1
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHh
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTAR 238 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 238 (393)
....+.|.+.=..||..|+..+.+++ +.+. .+....|-..-=+|..-...|.++.+
T Consensus 32 ~~~~A~~f~~~a~eE~~HA~~~~~~l---~~i~---------------------~~~~~~le~a~~~E~~~~~~~~~~~~ 87 (123)
T cd01046 32 YPEVAEELKRIAMEEAEHAARFAELL---GKVS---------------------EDTKENLEMMLEGEAGANEGKKDAAT 87 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---hcCc---------------------ccHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 56788899988999999999999976 2221 24445555555667665666889999
Q ss_pred HHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 239 HAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 239 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
.|..-||...+..+..|+.||..|...|.+.+++|+
T Consensus 88 ~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~~ 123 (123)
T cd01046 88 EAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERYF 123 (123)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998763
No 12
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=96.54 E-value=0.098 Score=51.20 Aligned_cols=175 Identities=17% Similarity=0.222 Sum_probs=97.0
Q ss_pred cc-CCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHH--------HHHhhcccc-hhHHHHhhhhcCCcccCCCC
Q 016230 89 EK-CWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLV--------GDMITEEAL-PTYQTMLNTLDGVRDETGAS 158 (393)
Q Consensus 89 e~-~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv--------~~miTEd~L-PtY~~~L~~~fgv~d~~g~~ 158 (393)
.. -|.|.+ +|++. .+++|+ +|+++-+-.+. ++.++-.+| |.+.... .++
T Consensus 18 ~~~~W~~~e-id~s~------D~~~w~----~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~--~~~-------- 76 (280)
T cd07911 18 RKGFWNPAD-IDFSQ------DREDWE----QLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMA--AEG-------- 76 (280)
T ss_pred ccCCCCHHH-cCccc------hHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC--------
Confidence 44 699999 77654 344554 37766544332 333333444 3332111 111
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcCCC-C----hHhhHHHH--HHHhhcCCCCCCCCCchh----hHhhhhhhhh
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRV-D----MKQIEKTI--QYLIGSGMDPKTENNPYL----GFIYTSFQER 227 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrv-D----p~~lE~t~--~~li~~G~d~~~~~~p~~----~~vYtsfQE~ 227 (393)
..+...+...=..+|++|+.+-..++-.=+.- | ....+... +.+.....+.....+|.. .++|..+.|-
T Consensus 77 ~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEG 156 (280)
T cd07911 77 RLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEG 156 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Confidence 23445567788899999999999998321221 1 00111111 111111111111123221 3456667887
Q ss_pred hhHHH-----HHHHHhHHhHhC-CHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 016230 228 ATFIS-----HGNTARHAKEYG-DLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMM 289 (393)
Q Consensus 228 AT~is-----h~ntarla~~~g-dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 289 (393)
--+-+ +..+++ .| -|-+.++...|.+||.+|-.|...+++.+...+|. ....+.+.+
T Consensus 157 ilf~sgF~~~~~~l~~----~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~-~~~~~~e~~ 219 (280)
T cd07911 157 VLAETGYYAWRTICEK----RGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDA-NWDVFEERM 219 (280)
T ss_pred HHHHHHHHHHHHHHhh----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChh-HHHHHHHHH
Confidence 54333 222322 33 78899999999999999999999999999988873 333344444
No 13
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.52 E-value=0.021 Score=50.72 Aligned_cols=104 Identities=14% Similarity=0.035 Sum_probs=69.2
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHH-hHcCCCChHhhHHHHHHHhhcCCCC---CCCCCchhhHhhhhhhhhhhHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKTIQYLIGSGMDP---KTENNPYLGFIYTSFQERATFISHG 234 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~t~~~li~~G~d~---~~~~~p~~~~vYtsfQE~AT~ish~ 234 (393)
+..-..-+..=..||-+|...|.+.+ .+.|...+ ...... ...-|.. ....++...+-...-.|..+..+|.
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~--~~~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~ 121 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRY--RSSSSD--KFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYK 121 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc--hhhccc--cCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777789999999999987 44443221 111110 0001111 1112444455555667999999999
Q ss_pred HHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHH
Q 016230 235 NTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269 (393)
Q Consensus 235 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 269 (393)
++++ ..+|+.+++++..|+.||..|...+.++
T Consensus 122 ~~~~---~~~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 122 RQAE---TIKDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8877 4679999999999999999999988765
No 14
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=96.49 E-value=0.053 Score=45.67 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=85.7
Q ss_pred CchhHhHHhhhchhhhhhhhHHHHhHHhHcCC-C--ChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHH
Q 016230 158 SLTSWAIWTRAWTAEENRHGDLLNKYLYLSGR-V--DMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHG 234 (393)
Q Consensus 158 ~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgr-v--Dp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ 234 (393)
...+.+.+......||..|++.+.+|+.--|. . ++..+.. +. .|....++...|...---|......+.
T Consensus 29 ~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~-----~~---~~~~~~~~~~~l~~~l~~e~~~~~~~~ 100 (142)
T PF00210_consen 29 NFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPE-----IP---KPPEWTDPREALEAALEDEKEIIEEYR 100 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHH-----HH---SSSSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhh-----hh---ccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999965444 2 2333333 11 111123677778887788888889999
Q ss_pred HHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 235 NTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 235 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
.+.++|...+|+.+..++..+..||..|..+...++..+
T Consensus 101 ~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l 139 (142)
T PF00210_consen 101 ELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNL 139 (142)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888999999999999999999999999988764
No 15
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=96.44 E-value=0.05 Score=54.42 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=95.3
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHH--------HHHhhcccchhHHHHhhhhcCCcccCCCCc
Q 016230 88 VEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLV--------GDMITEEALPTYQTMLNTLDGVRDETGASL 159 (393)
Q Consensus 88 ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv--------~~miTEd~LPtY~~~L~~~fgv~d~~g~~~ 159 (393)
....|.|.+ +|++. .+++|+ +|+++-+..+. ++.++-.||..+.. .+.. . ..
T Consensus 35 ~~~fW~peE-idls~------D~~dw~----~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~~i~----~~~~---~--~~ 94 (311)
T PRK08326 35 NAKFWNPAD-IDFSR------DAEDWE----KLSDEERDYATRLCAQFIAGEEAVTLDIQPLIS----AMAA---E--GR 94 (311)
T ss_pred HHcCCCHHh-cCccc------hHHHHH----hCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hccc---c--CC
Confidence 346799998 77654 345664 37776544332 34444455532221 1110 0 01
Q ss_pred hhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHH------HHHHh-----hcCCCCCCCCCc---hhhHh-hhhh
Q 016230 160 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKT------IQYLI-----GSGMDPKTENNP---YLGFI-YTSF 224 (393)
Q Consensus 160 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t------~~~li-----~~G~d~~~~~~p---~~~~v-Ytsf 224 (393)
.+-..+...=..+|++|..+-..|+-.-|..+. +... .+..+ ....+.....+| +..++ |..+
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~ 172 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTED--LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHV 172 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 344556777889999999999999843333321 1110 11110 101111111122 22333 6667
Q ss_pred hhhhhHHH-----HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016230 225 QERATFIS-----HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD 279 (393)
Q Consensus 225 QE~AT~is-----h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 279 (393)
.|---+.+ ..++++ .---|-++++...|.+||.+|-.|...+++.+...+|.
T Consensus 173 iEGi~f~sgF~~~~~~l~~---~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~ 229 (311)
T PRK08326 173 VEGVLAETGYYAWRKICVT---RGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDS 229 (311)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 88744322 123433 22278899999999999999999999999999988885
No 16
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.33 E-value=0.15 Score=44.50 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=81.8
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcC-CCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSG-RVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsg-rvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
......|...=..||-+|.+.+.+|+.--| ......+. .+....+....+-...=.|..+...|..+.
T Consensus 36 ~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~-----------~~~~~~~~~~~l~~~l~~E~~~~~~y~~~~ 104 (153)
T cd00907 36 LEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLG-----------KLRIGEDVPEMLENDLALEYEAIAALNEAI 104 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCC-----------CCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888999999999999995434 32221110 111112444556666667888888899999
Q ss_pred hHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchH
Q 016230 238 RHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGT 281 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~t 281 (393)
++|.+.+|+....++..|.+||..|..+|.+.++.+ +..++++
T Consensus 105 ~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~-~~~g~~~ 147 (153)
T cd00907 105 ALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLI-DKMGLQN 147 (153)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCHHH
Confidence 999889999999999999999999999999999764 3344443
No 17
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=96.29 E-value=0.14 Score=49.97 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=94.8
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHH--------HHHhhcccc-hhHHHHhhhhcCCcccCCCCch
Q 016230 90 KCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLV--------GDMITEEAL-PTYQTMLNTLDGVRDETGASLT 160 (393)
Q Consensus 90 ~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv--------~~miTEd~L-PtY~~~L~~~fgv~d~~g~~~~ 160 (393)
..|.|.+ +| |....++|.. ||+.-+.++. ++.++-+++ +. |..... .+
T Consensus 29 ~fW~peE-i~------~~~D~~~~~~----Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~----i~~~~~--------~~ 85 (281)
T PF00268_consen 29 NFWTPEE-ID------MSKDIKDWKK----LSEEEREAYKRILAFFAQLDSLVSENLLPN----IMPEIT--------SP 85 (281)
T ss_dssp T---GGG-S-------GGGHHHHHHH----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCS--------SH
T ss_pred CCCCchh-cC------hhhhHHHHHh----CCHHHHHHHHHHHHHHHHHHhHHHhhHHHH----HHHHcC--------HH
Confidence 4787777 33 3445566655 7777655543 333333333 22 222332 56
Q ss_pred hHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHh-------------hHHHHHHHhhcCCCCCCCCCchh-hHhhhhhhh
Q 016230 161 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQ-------------IEKTIQYLIGSGMDPKTENNPYL-GFIYTSFQE 226 (393)
Q Consensus 161 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~-------------lE~t~~~li~~G~d~~~~~~p~~-~~vYtsfQE 226 (393)
+...+...+.++|+.|..+-..++-.-+ -|+.. +.+ +...+..-++.. +++. .+++-.+-|
T Consensus 86 E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~~~~~~~~~~~~~~l~~-k~~~i~~~~~~~---~~~~~~lv~~~~lE 160 (281)
T PF00268_consen 86 EIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKERDEIFDWVEEDPELQK-KLDWIEKWYEDN---DSLAEKLVASVILE 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHSHHHHH-HHHHHHHHHCSS---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhhhHHhh-HHHHHHhhchhh---hhHHHHHHHHHHHH
Confidence 7888899999999999999988884433 23322 222 222344444432 3333 456667777
Q ss_pred hhhHHH-HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 016230 227 RATFIS-HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEI 276 (393)
Q Consensus 227 ~AT~is-h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 276 (393)
.--+.+ +.-+.-+++.--=|-+.++...|.+||.+|..|...+++.+.+-
T Consensus 161 gi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e 211 (281)
T PF00268_consen 161 GILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEE 211 (281)
T ss_dssp HTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 764332 22333333333368899999999999999999999999998865
No 18
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.10 E-value=0.089 Score=47.92 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred CchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 214 NPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 214 ~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
++..-+.+.--=|.....-|.++.+. +.||.+..++.+|..||..|..-|.+.++.
T Consensus 99 d~~~~L~~ni~aE~~Ai~~Y~~l~~~---~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 99 NLVADLRSNIAAESRARLTYERLYEM---TDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556667777788888889977765 669999999999999999999999998875
No 19
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.07 E-value=0.017 Score=48.36 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=46.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 220 IYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 220 vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
-..+-.|.....+|..+++.++.-| |.+++++..||.||.+|..++.++...+
T Consensus 4 ~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 4 EMAIKMELEAAKFYRELAEKAKDEG-PELKELFRRLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445678899999999999887666 9999999999999999999999999876
No 20
>PRK10635 bacterioferritin; Provisional
Probab=96.00 E-value=0.12 Score=47.14 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=83.8
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHH-hHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
...++.|...=..||-+|++.|-+++ .+-|..+...+.. ..++ .++...|-..--.|+-+.-.|+...
T Consensus 37 ~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~---------~~~g--~~v~eml~~dl~~E~~ai~~y~e~i 105 (158)
T PRK10635 37 LMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGK---------LNIG--EDVEEMLRSDLRLELEGAKDLREAI 105 (158)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC---------CCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777555889999999999999 5555556655522 2222 4677788888888999999999999
Q ss_pred hHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 238 RHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
++|...+|++-.+++..|-.||..|...+.+.++.+
T Consensus 106 ~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i 141 (158)
T PRK10635 106 AYADSVHDYVSRDMMIEILADEEGHIDWLETELDLI 141 (158)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999989999999999999999999999998888753
No 21
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=95.67 E-value=0.61 Score=47.84 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=96.8
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHH--------HHHhhcccchhHHHHhhhhcCCcccCCCCch
Q 016230 89 EKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLV--------GDMITEEALPTYQTMLNTLDGVRDETGASLT 160 (393)
Q Consensus 89 e~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv--------~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~ 160 (393)
...|.|.+ || |...+++|+ ...+|+|+-+-++. +++++-+|+.. .+..++. .+
T Consensus 68 ~nfW~peE-I~------ls~Di~dw~-~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~---~l~~~i~--------~p 128 (369)
T PRK07209 68 ANHWMPQE-VN------MSRDIALWK-SPNGLTEDERRIVKRNLGFFSTADSLVANNIVL---AIYRHIT--------NP 128 (369)
T ss_pred hCCCCchh-cC------ccccHHHHc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHcC--------HH
Confidence 45799998 43 333456673 22357777655443 34444455421 1122232 46
Q ss_pred hHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhH----------HHHHHH---hhc----CCCCCCC---CCchhhHh
Q 016230 161 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIE----------KTIQYL---IGS----GMDPKTE---NNPYLGFI 220 (393)
Q Consensus 161 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE----------~t~~~l---i~~----G~d~~~~---~~p~~~~v 220 (393)
+...++..+.++|+.|+.+-...+-.-+ .|+..+. +....+ +.. +++..+. .+.+..++
T Consensus 129 E~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv 207 (369)
T PRK07209 129 ECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLI 207 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence 6778999999999999998765552212 2443311 111111 111 1221111 12344554
Q ss_pred -hhhhhhhhhHHH----HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016230 221 -YTSFQERATFIS----HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD 279 (393)
Q Consensus 221 -YtsfQE~AT~is----h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 279 (393)
|.+|.|-.-+-+ --++++ .--=|-++++...|++||.+|-.|+..++..+....|+
T Consensus 208 a~~~ilEGi~FysgFa~~~~l~r---~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~ 268 (369)
T PRK07209 208 AFYCIMEGIFFYVGFTQILSLGR---QNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPH 268 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh---cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 456667644322 223433 22256789999999999999999999999999887775
No 22
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=95.66 E-value=0.2 Score=50.07 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=97.7
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHH--------HHHhhccc-chhHHHHhhhhcCCcccCCCCc
Q 016230 89 EKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLV--------GDMITEEA-LPTYQTMLNTLDGVRDETGASL 159 (393)
Q Consensus 89 e~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv--------~~miTEd~-LPtY~~~L~~~fgv~d~~g~~~ 159 (393)
..-|.|.++ | |...+.+|+ .|+++-+-++. ++.++-++ +|.+...+ ..
T Consensus 31 ~~fW~peEi-~------~s~D~~dw~----~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~------------~~ 87 (324)
T PRK09614 31 ANFWLPEEV-P------LSNDLKDWK----KLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPDI------------TT 87 (324)
T ss_pred hCCCCCccc-c------ccchHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHC------------Cc
Confidence 358999994 3 333455664 47776554432 34444444 34443322 24
Q ss_pred hhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHh--hHH---------HHHHHhhcCCCCCCCCCchhhHhhhhhhhhh
Q 016230 160 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQ--IEK---------TIQYLIGSGMDPKTENNPYLGFIYTSFQERA 228 (393)
Q Consensus 160 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~--lE~---------t~~~li~~G~d~~~~~~p~~~~vYtsfQE~A 228 (393)
++...+...+.++|+.|+.+-...+-.-+ .+.+. +.. .+...+..-|+....+.-+..+++..+.|.-
T Consensus 88 ~E~~~~~~~q~~~E~iH~~sYs~il~tl~-~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~lEgi 166 (324)
T PRK09614 88 PEEEAVLANIAFMEAVHAKSYSYIFSTLC-SPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVASVFLEGF 166 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 67788999999999999998777763211 12221 111 0112222223321111233445666666754
Q ss_pred hHHH-HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016230 229 TFIS-HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG 280 (393)
Q Consensus 229 T~is-h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 280 (393)
-+-+ ..-+--+++.--=|-++++...|++||.+|-.|...++..++...|..
T Consensus 167 ~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~ 219 (324)
T PRK09614 167 LFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPEL 219 (324)
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHh
Confidence 4332 111112222222567899999999999999999999999999877764
No 23
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.33 Score=45.22 Aligned_cols=139 Identities=17% Similarity=0.051 Sum_probs=94.7
Q ss_pred HHHHHHHHhhc-ccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhH-cCCC-ChHhhHHH-HH
Q 016230 125 FVVLVGDMITE-EALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYL-SGRV-DMKQIEKT-IQ 200 (393)
Q Consensus 125 ~v~Lv~~miTE-d~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~l-sgrv-Dp~~lE~t-~~ 200 (393)
.-+|-.+.-.| ++.=-|. .++.+.. +..-..-+..=..||-+|-+.+.+.++- +++- .-...+.. ..
T Consensus 26 ~e~L~~Ai~~E~eA~~fY~-~lae~~~--------~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~ 96 (176)
T COG1633 26 EELLAIAIRGELEAIKFYE-ELAERIE--------DEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIES 96 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcC--------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhh
Confidence 34455555556 4444444 4444442 4466677778889999999999998843 2221 11112222 22
Q ss_pred HHhhcCCC---CCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 016230 201 YLIGSGMD---PKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFE 275 (393)
Q Consensus 201 ~li~~G~d---~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 275 (393)
..+..+.. .....+....+-+...+|+.|-.+|--+.. ...++..+.+...|+.||..|+..+....+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~---~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 97 EILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLD---ELVNEEAKKLFKTIADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred hhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333444 333346778899999999999999996655 4679999999999999999999999999887654
No 24
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=95.27 E-value=0.66 Score=46.74 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=93.0
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHH--------HHhhcccc-hhHHHHhhhhcCCcccCCCCch
Q 016230 90 KCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVG--------DMITEEAL-PTYQTMLNTLDGVRDETGASLT 160 (393)
Q Consensus 90 ~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~--------~miTEd~L-PtY~~~L~~~fgv~d~~g~~~~ 160 (393)
.-|.|.++ | |...+.+|+ +|+++-+.++.- +.++-+++ +.+.. .+ ..+
T Consensus 42 ~fW~peEi-~------~s~D~~dw~----~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~----~~--------~~p 98 (330)
T PTZ00211 42 SFWTAEEI-D------LGNDLKDWE----KLNDGERHFIKHVLAFFAASDGIVLENLAQRFMR----EV--------QVP 98 (330)
T ss_pred cCCChhhc-c------hhhhHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC--------CHH
Confidence 58999884 3 444566775 487776655432 33333333 22221 22 145
Q ss_pred hHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHh-------------hHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhh
Q 016230 161 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQ-------------IEKTIQYLIGSGMDPKTENNPYLGFIYTSFQER 227 (393)
Q Consensus 161 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~-------------lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~ 227 (393)
+...+...|.+.|+.|+..-.-.+-.-+ -|+.. +-+.... +..-++ ...+++..++.-++.|.
T Consensus 99 E~~~~~~~q~~~E~iHs~sYs~il~tl~-~~~~~~~~~f~~~~~~p~i~~K~~~-~~~~~~--~~~~~~~~lv~~~~lEg 174 (330)
T PTZ00211 99 EARCFYGFQIAMENIHSETYSLLIDTYI-TDEEEKDRLFHAIETIPAIKKKAEW-AAKWIN--SSNSFAERLVAFAAVEG 174 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCHHHHHHHHH-HHHHHh--cchHHHHHHHHHHHhhh
Confidence 6778899999999999987554432111 13222 1111111 111122 12345666665556775
Q ss_pred hhHHH-HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016230 228 ATFIS-HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD 279 (393)
Q Consensus 228 AT~is-h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 279 (393)
--+.+ ...+--+++.--=|-++++...|++||.+|-.|...++..+++..|.
T Consensus 175 i~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~ 227 (330)
T PTZ00211 175 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPR 227 (330)
T ss_pred HHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCH
Confidence 43322 22222222222256689999999999999999999999999866553
No 25
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.64 Score=47.76 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=110.4
Q ss_pred HHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHH--------Hhhcccchh-HHHHh
Q 016230 75 GWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGD--------MITEEALPT-YQTML 145 (393)
Q Consensus 75 ~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~--------miTEd~LPt-Y~~~L 145 (393)
+|+.+.-.+. ...-|-|.+ ||-+. ..++|+ +|+++-+.++..+ .++=.++.- +-..+
T Consensus 35 ~~~~~~y~~~---~~nFW~Pee-I~ls~------D~~dw~----~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~~~~~~v 100 (348)
T COG0208 35 PWALELYKKL---TANFWLPEE-IDLSN------DIKDWK----KLSDDEKDLIIRVLAFLTLLDSIQANNGVPALSPLV 100 (348)
T ss_pred HHHHHHHHHH---HhcCCCchh-cCccc------cHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHc
Confidence 3444444433 356899998 87755 234666 5888765554332 222222222 21111
Q ss_pred hhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHH-hHcCCCChHh-----------hHHHHHHHhhcCCCCCCCC
Q 016230 146 NTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMKQ-----------IEKTIQYLIGSGMDPKTEN 213 (393)
Q Consensus 146 ~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~-----------lE~t~~~li~~G~d~~~~~ 213 (393)
..+.-..|+..|..+|+=|+..=.--+ -+..--+... +-+ +..-|...|+- .+.
T Consensus 101 ------------~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~-k~~~i~~~y~~-~~~ 166 (348)
T COG0208 101 ------------TTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQE-KAEIILRYYDD-LGD 166 (348)
T ss_pred ------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHH-HHHHHHHHHHh-ccC
Confidence 245668899999999999997643332 1111111111 111 22233433442 233
Q ss_pred Cc--------hhhHhhhhhhhhhh----HHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchH
Q 016230 214 NP--------YLGFIYTSFQERAT----FISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGT 281 (393)
Q Consensus 214 ~p--------~~~~vYtsfQE~AT----~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~t 281 (393)
+| +...+|.++-|--- +.+.-++++..+ =|-.++|.+.|.+||.+|-.++..++.+++...|+.-
T Consensus 167 ~~~~~~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~k---M~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~ 243 (348)
T COG0208 167 DPDDPLEEFLLKLVVASVILEGILFYSGFAYPLYLARRGK---MPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELW 243 (348)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhh
Confidence 45 77788888888532 445666766544 5678999999999999999999999999999999853
Q ss_pred HHHHHHHH
Q 016230 282 VMALADMM 289 (393)
Q Consensus 282 m~Aia~mm 289 (393)
-..+.+.+
T Consensus 244 t~e~~~~~ 251 (348)
T COG0208 244 TAELKDEI 251 (348)
T ss_pred hHHHHHHH
Confidence 33444333
No 26
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.05 E-value=0.28 Score=42.62 Aligned_cols=108 Identities=15% Similarity=0.055 Sum_probs=74.2
Q ss_pred CchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCC----CCCCchhhHhhhhhhhhhhHHHH
Q 016230 158 SLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPK----TENNPYLGFIYTSFQERATFISH 233 (393)
Q Consensus 158 ~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~----~~~~p~~~~vYtsfQE~AT~ish 233 (393)
.......|+..=..||..|.+.+..++..-|..-...... +...+|+.+. ...+....+-..--.|..+...|
T Consensus 36 ~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~ 112 (148)
T cd01052 36 EGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKD---WYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVY 112 (148)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHH---HHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3667888898889999999999999996544432222211 2222222211 11233334444444677777778
Q ss_pred HHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHH
Q 016230 234 GNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269 (393)
Q Consensus 234 ~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 269 (393)
+++.++|.. +|++...++..|-+||..|...|.++
T Consensus 113 ~~~~~~a~~-~D~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 113 KELCDMTHG-KDPVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred HHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888765 89999999999999999999998876
No 27
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.92 E-value=0.69 Score=48.07 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=94.2
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHH--------HHhhcccc-hhHHHHhhhhcCCcccCCCCch
Q 016230 90 KCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVG--------DMITEEAL-PTYQTMLNTLDGVRDETGASLT 160 (393)
Q Consensus 90 ~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~--------~miTEd~L-PtY~~~L~~~fgv~d~~g~~~~ 160 (393)
.-|.|.+ +| |...+++|+. ..|+|+-+.++.- +.++-+++ +.+. ..+. .+
T Consensus 118 ~fW~peE-i~------ls~D~~dw~~--~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~----~~~~--------~p 176 (410)
T PRK12759 118 AHWIEDE-ID------LSEDVTDWKN--GKITKVEKEYITNILRLFTQSDVAVGQNYYDQFI----PLFK--------NN 176 (410)
T ss_pred cCCCccc-cc------hhhhHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HhcC--------HH
Confidence 4787777 43 3445667751 4688887665543 33333332 2222 2222 45
Q ss_pred hHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHh---------hHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhH-
Q 016230 161 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQ---------IEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATF- 230 (393)
Q Consensus 161 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~---------lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~- 230 (393)
+-..+...|+++|+.|+.+-...+-.=+. |.+. +.+.... +.. .++...+.-+..++...|.|-.-+
T Consensus 177 E~~~~~~~q~~~E~iHsesYs~il~tl~~-~~~~~~~~~~~~~~~~k~~~-~~~-~~~~~~~~~~~~lv~~~~lEgi~Fy 253 (410)
T PRK12759 177 EIRNMLGSFAAREGIHQRAYALLNDTLGL-PDSEYHAFLEYKAMTDKIDF-MMD-ADPTTRRGLGLCLAKTVFNEGVALF 253 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhHHHHHHHHH-HHh-cCcchHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999886655521111 1111 1111112 111 222211122334666666776332
Q ss_pred ---HHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016230 231 ---ISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD 279 (393)
Q Consensus 231 ---ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 279 (393)
.+--++++. --=|-++++...|++||..|-.|...++..+++..|+
T Consensus 254 s~Fa~~~~l~~~---g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 302 (410)
T PRK12759 254 ASFAMLLNFQRF---GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPY 302 (410)
T ss_pred HHHHHHHHHHhc---CCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 222233331 1257789999999999999999999999999988875
No 28
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=94.68 E-value=0.06 Score=46.44 Aligned_cols=46 Identities=24% Similarity=0.210 Sum_probs=40.2
Q ss_pred hhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 225 QERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 225 QE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
-|.-...+|+++++. ..+|.+++++..||.+|.+|+.+|.++....
T Consensus 9 ~E~~~~~~Y~~la~~---~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 9 DEITEAAIYRKLAKR---EKDPENREILLKLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367778899999886 4599999999999999999999999998764
No 29
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=94.49 E-value=0.94 Score=40.41 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=79.3
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHh
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTAR 238 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 238 (393)
-...+.|...=..||..|.+-|..|+.--|.. |. +. -+. .+....++...|-..-=.|......|+.+.+
T Consensus 37 ~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~-p~-~~-----~i~---~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~ 106 (157)
T TIGR00754 37 LKELADHEYHESIDEMKHADEIIERILFLEGL-PN-LQ-----DLG---KLRIGETVREMLEADLALELDVLNRLKEAIA 106 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CC-CC-----cCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677787777789999999999999665543 22 00 011 1112235555666666678888888898988
Q ss_pred HHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 239 HAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 239 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
+|.+.+|+....++..|.+||..|..++...++.+-
T Consensus 107 ~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~~ 142 (157)
T TIGR00754 107 YAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELID 142 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999987543
No 30
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=94.19 E-value=0.26 Score=44.32 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=88.3
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHH-hHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
.+.++.|.+.=..||..|++.|-+|+ ..-|.++...++.-. .....++...|-..-=.|.--...+..+.
T Consensus 36 l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~---------~~~~~~~~e~l~~al~~E~~vt~~~~~l~ 106 (161)
T cd01056 36 LPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPE---------KDEWGSGLEALELALDLEKLVNQSLLDLH 106 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCC---------CcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999 455555665544421 01234677777777778888788888899
Q ss_pred hHHhHhCCHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHhhC
Q 016230 238 RHAKEYGDLKLAQICGI-IASDEKRHETAYTKIVEKLFEID 277 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~le~d 277 (393)
++|...+|++....+.. +=.++..|.+.+.++++.+-.+.
T Consensus 107 ~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~~~ 147 (161)
T cd01056 107 KLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRVG 147 (161)
T ss_pred HHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999997 99999999999999998765443
No 31
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=93.90 E-value=2.7 Score=42.70 Aligned_cols=164 Identities=9% Similarity=0.069 Sum_probs=84.1
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhc
Q 016230 90 KCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAW 169 (393)
Q Consensus 90 ~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~W 169 (393)
.-|.|.+ || |...+++|. .|+++-+..+.-.+--=-.+.+.+......--. ..+. ..+-..+...+
T Consensus 45 nfW~peE-I~------ls~D~~dw~----~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~--~e~~-~~~e~~~l~~q 110 (335)
T PRK13965 45 NFWLPEK-VP------VSNDLNSWR----SLGEDWQQLITRTFTGLTLLDTVQATVGDVAQI--PHSQ-TDHEQVIYTNF 110 (335)
T ss_pred cCCCccc-cC------chhhHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhc--cccc-chHHHHHHHHH
Confidence 5898888 44 344566774 388876665544332111222222211100000 0011 12335677999
Q ss_pred hhhhhhhhH----HHHhHH--------hHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHH-HHHH
Q 016230 170 TAEENRHGD----LLNKYL--------YLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFIS-HGNT 236 (393)
Q Consensus 170 TAEEnRHG~----aLr~YL--------~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~is-h~nt 236 (393)
.++|+-|+. ++..++ +-.-. +...+-+.. ..+..-|+- .+++..+++..+.|-.-+-+ ...+
T Consensus 111 ~~~E~IHs~sYs~il~tl~~~~~~~~~f~~~~-~~p~l~~K~-~~i~~~~~~---~~~~~~~va~~~lEGi~FysgFa~~ 185 (335)
T PRK13965 111 AFMVAIHARSYGTIFSTLCSSEQIEEAHEWVV-STESLQRRA-RVLIPYYTG---DDPLKSKVAAAMMPGFLLYGGFYLP 185 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh-cCHHHHHHH-HHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 444442 11101 111122222 222333332 35677777777777654332 1112
Q ss_pred HhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 237 ARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 237 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
--+++.--=|-++++...|.+||..|-.|-.-++..
T Consensus 186 ~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~ 221 (335)
T PRK13965 186 FYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQ 221 (335)
T ss_pred HHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 122322225678999999999999999864444433
No 32
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=93.48 E-value=3.2 Score=41.91 Aligned_cols=159 Identities=9% Similarity=-0.010 Sum_probs=88.3
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHHH---------hhcccchhHHHHhhhhcCCcccCCCCc
Q 016230 89 EKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDM---------ITEEALPTYQTMLNTLDGVRDETGASL 159 (393)
Q Consensus 89 e~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~m---------iTEd~LPtY~~~L~~~fgv~d~~g~~~ 159 (393)
..-|.|.+ || |...+++|+ .|+++-+.++.-.+ .++...+... ..+ ..
T Consensus 31 ~~fW~peE-I~------ls~D~~dw~----~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~------~~~------~~ 87 (322)
T PRK13967 31 GNFWLPEK-IP------LSNDLASWQ----TLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMI------DDA------VT 87 (322)
T ss_pred hCCCCccc-cC------chhhHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------Hhc------CC
Confidence 46898888 55 334566774 38888776554443 1222222111 011 14
Q ss_pred hhHhHHhhhchhhhhhhhHHHHhHHhHcCCCCh--HhhHHH---------HHHHhhcCCCCCCCCCchhhHhhhhhhhhh
Q 016230 160 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM--KQIEKT---------IQYLIGSGMDPKTENNPYLGFIYTSFQERA 228 (393)
Q Consensus 160 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp--~~lE~t---------~~~li~~G~d~~~~~~p~~~~vYtsfQE~A 228 (393)
++-..+...|..+|+.|+.+-..-+-.=+. +. ..+... +...+..-|+- .+.+..++...+.|-.
T Consensus 88 ~e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~---~~~~~~~v~~~~lEgi 163 (322)
T PRK13967 88 PHEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRG---DDALKRKASSVMLESF 163 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Confidence 556789999999999999886655521111 11 111110 11233333332 2455666766677764
Q ss_pred hHH-HHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 229 TFI-SHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 229 T~i-sh~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
-+- +....--+++.--=|-+++|...|.+||..|-.+....+.+.+
T Consensus 164 ~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 164 LFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1111212222222567899999999999999999987664444
No 33
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=93.15 E-value=0.51 Score=41.04 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=66.8
Q ss_pred hhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH------hhCCchHHHHHHHHHHhccCCCcc
Q 016230 225 QERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF------EIDPDGTVMALADMMKKKISMPAH 298 (393)
Q Consensus 225 QE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l------e~dPd~tm~Aia~mm~~~i~MP~~ 298 (393)
-|......|...++.|+.-|-+.++..+..+|.+|..|..-|.+.+..+- ..+...+...|...+.
T Consensus 12 ~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~-------- 83 (134)
T cd01041 12 GESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIA-------- 83 (134)
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHH--------
Confidence 45566677888999999999999999999999999999999988876531 1122333344444443
Q ss_pred cCCCCCc---cchhhHHHHHHHHhcCCChhh-HHHHH
Q 016230 299 LMYDGRD---DNLFEHFSTVAQRLGVYTAKD-YADIL 331 (393)
Q Consensus 299 ~m~dg~~---~~lf~~~savaqr~GvYt~~d-y~dIl 331 (393)
+.. ...|..+..+|.+.|-++..+ ...|+
T Consensus 84 ----~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~ 116 (134)
T cd01041 84 ----GETYEYTEMYPEFAEVAEEEGFKEAARSFEAIA 116 (134)
T ss_pred ----hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 221 145777888888888777777 33354
No 34
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=93.14 E-value=2.5 Score=40.68 Aligned_cols=146 Identities=18% Similarity=0.101 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHH-hHcCCC-ChH----h-h
Q 016230 123 DYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRV-DMK----Q-I 195 (393)
Q Consensus 123 d~~v~Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrv-Dp~----~-l 195 (393)
-+...+......|-++-....++...-. .+.|..-.---+..|.||...+.-++ .+++.. ++. + .
T Consensus 74 ~l~~~~~~~~~~E~ga~~~~a~~~r~~~--------~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w 145 (233)
T PF02332_consen 74 FLKRHLGPLRHAEYGAQMASAYIARFAP--------GTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAW 145 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-S--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHH
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHH
Confidence 3445666677788888888877766553 46777766778889999999888777 332222 222 1 0
Q ss_pred -----HHHHHHHhhcCCCCCCCCCchhhHhhhhhh-hh-hhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHH
Q 016230 196 -----EKTIQYLIGSGMDPKTENNPYLGFIYTSFQ-ER-ATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTK 268 (393)
Q Consensus 196 -----E~t~~~li~~G~d~~~~~~p~~~~vYtsfQ-E~-AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~ 268 (393)
=+-...++..-+-. .++...++...|+ |. -|.+.+..+.+.|...||..+..|+..|-.||.||..-=..
T Consensus 146 ~~~p~wq~~R~~vE~~~~~---~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~a 222 (233)
T PF02332_consen 146 LNDPAWQPLRRLVEDLLVT---YDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGDA 222 (233)
T ss_dssp HHSHHHHHHHHHHHHHTTS---SSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCchhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122333332222 2677777777666 43 46777888899999999999999999999999999999999
Q ss_pred HHHHHHhhCCc
Q 016230 269 IVEKLFEIDPD 279 (393)
Q Consensus 269 iv~~~le~dPd 279 (393)
.|+-+++.+|+
T Consensus 223 l~~~~~~~~~~ 233 (233)
T PF02332_consen 223 LFKMALEDDPN 233 (233)
T ss_dssp HHHHHHCTTTH
T ss_pred HHHHHHhCCCC
Confidence 99988887764
No 35
>PF13668 Ferritin_2: Ferritin-like domain
Probab=92.92 E-value=1.6 Score=37.71 Aligned_cols=98 Identities=19% Similarity=0.095 Sum_probs=65.0
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcCCC--ChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRV--DMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNT 236 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrv--Dp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nt 236 (393)
++.....+..=...|..|-..|++-+- .++. .|..-. .+++.. ++...+..-..-|..-...|...
T Consensus 37 ~~~~~~~~~~i~~~E~~H~~~l~~~l~-g~~~~~~~~~~~---------~~~~~~--~~~~~L~~A~~~E~~~~~~Y~g~ 104 (137)
T PF13668_consen 37 DPEVRDLFQEIADQEQGHVDFLQAALE-GGRPVPPPAYDF---------PFDPFT--DDASFLRLAYTLEDVGVSAYKGA 104 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCcccc---------ccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555567888889999999999996 1111 111101 334433 44333333334466555666655
Q ss_pred HhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 016230 237 ARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVE 271 (393)
Q Consensus 237 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 271 (393)
+.. ..+|.+.+++..|+++|.+|...++.++.
T Consensus 105 ~~~---~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 105 APQ---IEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554 56999999999999999999999998764
No 36
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=92.73 E-value=8.9 Score=38.78 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=96.6
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHHHhhcccchhHHHH-hh-hhcCCcccCCCCchhHhHHh
Q 016230 89 EKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTM-LN-TLDGVRDETGASLTSWAIWT 166 (393)
Q Consensus 89 e~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~miTEd~LPtY~~~-L~-~~fgv~d~~g~~~~~W~~Wv 166 (393)
..-|.|.+ +|- ...+++|+ .||++-+-++...+--=-.+.+.+.. +. .+... ...++-..+.
T Consensus 33 ~nfW~peE-i~l------~~D~~dw~----~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~-----~~~pe~~~~~ 96 (324)
T PRK13966 33 GNFWLPEK-VPV------SNDIPSWG----TLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPD-----ALTPHEEAVL 96 (324)
T ss_pred hCCCCccc-cCc------cchHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh-----cCCHHHHHHH
Confidence 45798888 443 33466774 38888766655443222233333332 11 11110 1245557889
Q ss_pred hhchhhhhhhhHHHHhHHh-HcCCC----------ChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHH-HH
Q 016230 167 RAWTAEENRHGDLLNKYLY-LSGRV----------DMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFIS-HG 234 (393)
Q Consensus 167 ~~WTAEEnRHG~aLr~YL~-lsgrv----------Dp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~is-h~ 234 (393)
..|.++|+-|+.+-.--+- +.... +-..+.+. ...+..-|+. .+++..+++-++.|..-+-+ -.
T Consensus 97 ~~q~~~E~IHsesYs~il~tl~~~~~~~~~f~~~~~~~~l~~K-~~~i~~~~~~---~~~~~~~va~~~lEgi~FysgF~ 172 (324)
T PRK13966 97 TNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRK-AEIVLQYYRG---DEPLKRKVASTLLESFLFYSGFY 172 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhcCHHHHHH-HHHHHHHhcC---ChHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999987543331 10100 01112222 2223333443 24567778778888763322 11
Q ss_pred HHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016230 235 NTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD 279 (393)
Q Consensus 235 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 279 (393)
..--++++..=+-++++...|.+||..|-.|...++...+...|+
T Consensus 173 ~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~ 217 (324)
T PRK13966 173 LPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDD 217 (324)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCh
Confidence 111223333456789999999999999999999999877665555
No 37
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=92.60 E-value=1 Score=39.08 Aligned_cols=88 Identities=22% Similarity=0.144 Sum_probs=67.0
Q ss_pred hhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhccCCCcccCCCCC
Q 016230 225 QERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGR 304 (393)
Q Consensus 225 QE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~ 304 (393)
-|......|-..++.|+..|.|-+++....+|..|..|...|.+++.. -|..+...|...+. +-...
T Consensus 12 ~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~----i~~~~~~~le~a~~-------~E~~~-- 78 (123)
T cd01046 12 GETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGK----VSEDTKENLEMMLE-------GEAGA-- 78 (123)
T ss_pred hHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHH-------hHHHH--
Confidence 466666778889999999999999999999999999999999997633 23566667776665 11111
Q ss_pred ccchhhHHHHHHHHhcCCChhh
Q 016230 305 DDNLFEHFSTVAQRLGVYTAKD 326 (393)
Q Consensus 305 ~~~lf~~~savaqr~GvYt~~d 326 (393)
...|..+..++.+-|-|+..+
T Consensus 79 -~~~~~~~~~~A~~egd~~~~~ 99 (123)
T cd01046 79 -NEGKKDAATEAKAEGLDEAHD 99 (123)
T ss_pred -HHhHHHHHHHHHHcCCHHHHH
Confidence 123778899999999887766
No 38
>PRK10304 ferritin; Provisional
Probab=92.23 E-value=1.8 Score=39.74 Aligned_cols=104 Identities=16% Similarity=0.033 Sum_probs=79.2
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhH-cCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~l-sgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
...++.|.+.=..||-.|+..|-+|+.. -|++....+..- +....++...|-..-=+|+.-..++.++.
T Consensus 36 l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p----------~~~~~s~~e~~~~~l~~E~~vt~~i~~l~ 105 (165)
T PRK10304 36 FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESP----------FAEYSSLDELFQETYKHEQLITQKINELA 105 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999955 444443333211 11223566666666668888888899999
Q ss_pred hHHhHhCCHHHHHHHHHhhhh---hhHHHHHHHHHHHH
Q 016230 238 RHAKEYGDLKLAQICGIIASD---EKRHETAYTKIVEK 272 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~IAaD---E~RH~~~Y~~iv~~ 272 (393)
++|.+.+|++....+.-+-.+ |..|....-.-++.
T Consensus 106 ~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~ 143 (165)
T PRK10304 106 HAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSL 143 (165)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 77777765555543
No 39
>PLN02492 ribonucleoside-diphosphate reductase
Probab=92.04 E-value=3.5 Score=41.49 Aligned_cols=163 Identities=15% Similarity=0.044 Sum_probs=89.4
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHH--------HHHhhcccch-hHHHHhhhhcCCcccCCCCc
Q 016230 89 EKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLV--------GDMITEEALP-TYQTMLNTLDGVRDETGASL 159 (393)
Q Consensus 89 e~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv--------~~miTEd~LP-tY~~~L~~~fgv~d~~g~~~ 159 (393)
..-|.|.++ | |...+.+|+. |+++-+-++. ++.++-+++. .+. ..+ ..
T Consensus 30 ~~fW~peEi-~------ls~D~~dw~~----Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~~----~~~--------~~ 86 (324)
T PLN02492 30 ASFWTAEEV-D------LSADLKDWEK----LTDDERHFISHVLAFFAASDGIVLENLAARFM----KEV--------QV 86 (324)
T ss_pred HcCCChhhc-C------hhhhHHHHHh----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC--------CH
Confidence 358999984 3 3334556643 7776554432 3333333432 222 222 24
Q ss_pred hhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhh---H----------HHHHHHhhcCCCCCCCCCchhhHhhhhhhh
Q 016230 160 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQI---E----------KTIQYLIGSGMDPKTENNPYLGFIYTSFQE 226 (393)
Q Consensus 160 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~l---E----------~t~~~li~~G~d~~~~~~p~~~~vYtsfQE 226 (393)
++...+...+.+.|+-|+.+-...+-.-+ -|+... . +....+. . +.. ...+.+..++.-.+.|
T Consensus 87 ~E~~~~~~~q~~~E~iH~~sYs~i~~tl~-~d~~~~~~~f~~~~~~p~l~~K~~~~~-~-~~~-~~~~~~~~lva~~~lE 162 (324)
T PLN02492 87 PEARAFYGFQIAIENIHSEMYSLLLDTYI-KDPKEKDRLFNAIETIPCVAKKADWAL-R-WID-SSASFAERLVAFACVE 162 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCHHHHHHHHHHH-H-HHh-hhHHHHHHHHHHHhhh
Confidence 56778899999999999987554442111 133221 1 1111111 1 111 1124455555444566
Q ss_pred hhhHHH-HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016230 227 RATFIS-HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDP 278 (393)
Q Consensus 227 ~AT~is-h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP 278 (393)
---+.+ +..+--+++.--=|-++++...|++||.+|-.|...++..+.+.-+
T Consensus 163 gi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~ 215 (324)
T PLN02492 163 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLS 215 (324)
T ss_pred HHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 533222 2222222222225678999999999999999999999998886443
No 40
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=91.52 E-value=0.49 Score=39.37 Aligned_cols=48 Identities=25% Similarity=0.238 Sum_probs=42.4
Q ss_pred hhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 224 FQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 224 fQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
-.|.....+|..+++. .++|.++.++..||.||.+|...+..++..+-
T Consensus 8 ~~E~~~~~~Y~~~a~~---~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 8 KMEEEAAEFYLELAEK---AKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHhH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3688888999988664 67999999999999999999999999998865
No 41
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=90.37 E-value=0.98 Score=35.68 Aligned_cols=50 Identities=28% Similarity=0.236 Sum_probs=41.3
Q ss_pred hhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 222 TSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 222 tsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
-..-|......|...+.. ..+|.+++++..++.||.+|...+.+++..+-
T Consensus 6 ~~~~E~~a~~~y~~~~~~---~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g 55 (130)
T cd00657 6 ALAGEYAAIIAYGQLAAR---APDPDLKDELLEIADEERRHADALAERLRELG 55 (130)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344677777778877765 44999999999999999999999999997753
No 42
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=90.17 E-value=7.6 Score=40.07 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=94.1
Q ss_pred HHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHHHhhcccchhHHH-----Hhhhhc
Q 016230 75 GWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQT-----MLNTLD 149 (393)
Q Consensus 75 ~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~miTEd~LPtY~~-----~L~~~f 149 (393)
+|+.+.-..+++ .-|.|.+ +|- ...+++|. .||++-+-++...+--=-.|.+-+. .+..+.
T Consensus 35 ~~~~~lyk~~~~---~fW~peE-v~l------s~D~~dw~----~Lt~~Er~~~~~~L~~lt~lDs~q~~~~~~~~~~~i 100 (376)
T PRK09101 35 EIFEKLIEKQLS---FFWRPEE-VDV------SRDRIDYQ----ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLV 100 (376)
T ss_pred HHHHHHHHHHHh---CCCCccc-ccc------cccHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHC
Confidence 666666554433 5899888 443 33455663 3888877655333321112333332 122222
Q ss_pred CCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHH---------HHHHhhcCCCC-----------
Q 016230 150 GVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKT---------IQYLIGSGMDP----------- 209 (393)
Q Consensus 150 gv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t---------~~~li~~G~d~----------- 209 (393)
..++...+...|.++|+-|+..----+-.-. -|++++... +...+..-|+-
T Consensus 101 --------~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~-~~~~e~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~~~~ 171 (376)
T PRK09101 101 --------SIPELETWIETWSFSETIHSRSYTHIIRNIV-NDPSVVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYHLL 171 (376)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 2567888999999999999976432221000 144432221 11111110110
Q ss_pred -------C-----CCCCchh-----hHhhhhhhhhhhHHH-HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 016230 210 -------K-----TENNPYL-----GFIYTSFQERATFIS-HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVE 271 (393)
Q Consensus 210 -------~-----~~~~p~~-----~~vYtsfQE~AT~is-h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 271 (393)
+ ....++. .++...+.|---+.+ -..+--+++.--=+-++++...|++||..|-.|...+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~ 251 (376)
T PRK09101 172 GEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 251 (376)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011112 223333455433221 111111222222456899999999999999999999999
Q ss_pred HHHh--hCCc
Q 016230 272 KLFE--IDPD 279 (393)
Q Consensus 272 ~~le--~dPd 279 (393)
.+.. .+|+
T Consensus 252 ~l~~~~e~p~ 261 (376)
T PRK09101 252 LMRSGKDDPE 261 (376)
T ss_pred HHhhcccChh
Confidence 9885 6665
No 43
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=90.12 E-value=14 Score=39.44 Aligned_cols=140 Identities=21% Similarity=0.116 Sum_probs=84.6
Q ss_pred HHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHH-hHcC---CCChHh-------hH
Q 016230 128 LVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-YLSG---RVDMKQ-------IE 196 (393)
Q Consensus 128 Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsg---rvDp~~-------lE 196 (393)
+-+-...|-+|=.-+.++.+... ...+....---+.-|.||+...--|. +++. .+|-.. .-
T Consensus 83 ~~a~~~~Ey~a~~~~a~~~R~a~--------s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~ 154 (465)
T cd01057 83 LGAITPGEYAAVRGMAMLGRFAP--------AAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYA 154 (465)
T ss_pred hccccHHHHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHH
Confidence 33444556555555555544442 23466666666777888887655444 2222 222111 00
Q ss_pred HHHHHHhhcCCCCCCCCCchhhHhhhhhh-hh-hhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 197 KTIQYLIGSGMDPKTENNPYLGFIYTSFQ-ER-ATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 197 ~t~~~li~~G~d~~~~~~p~~~~vYtsfQ-E~-AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
......+...|-. .++...+++..|+ |. -|...-..+++.|...||..+..|...|-+||.||..-=...| .++
T Consensus 155 ~~~R~~~ed~~~t---~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~~g~~ll-~~l 230 (465)
T cd01057 155 GAAKRFFFDGFIT---GDAVEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLSIQSDEARHMANGYPTL-VLL 230 (465)
T ss_pred HHHHHHHHHHHhc---CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhHHHHH-HHH
Confidence 0111222222221 2555555555443 44 4555566677888889999999999999999999999999999 888
Q ss_pred hhCCc
Q 016230 275 EIDPD 279 (393)
Q Consensus 275 e~dPd 279 (393)
+.||+
T Consensus 231 ~~Dp~ 235 (465)
T cd01057 231 ENDPD 235 (465)
T ss_pred HcCcc
Confidence 88986
No 44
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=88.48 E-value=6.8 Score=38.63 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=44.6
Q ss_pred hHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 016230 241 KEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMK 290 (393)
Q Consensus 241 ~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 290 (393)
+..||...+.|+..|-.||..|-.+=.+-+..+-+......+..+..+++
T Consensus 176 ~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~~~f~~lv~ 225 (253)
T PF04305_consen 176 RSAGDEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPWETFRELVR 225 (253)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 34799999999999999999999998888888888888878888999985
No 45
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=88.04 E-value=2.6 Score=39.27 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhccCCCcccCCCCCccchh
Q 016230 230 FISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLF 309 (393)
Q Consensus 230 ~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf 309 (393)
..-|.-.|+.|+.-|.|.++.+...||-+|..|..-+.+++.++. .-...+..-+..++. .=. +.....|
T Consensus 20 ~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~-~~~~~~~eNl~~aie-GE~--------~e~~emy 89 (166)
T COG1592 20 VMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL-LVLGDTRENLEEAIE-GET--------YEITEMY 89 (166)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccHHHHHHHHHc-cch--------HHHHHhC
Confidence 445777788888999999999999999999999999999999877 222233444444443 000 1223456
Q ss_pred hHHHHHHHHhc
Q 016230 310 EHFSTVAQRLG 320 (393)
Q Consensus 310 ~~~savaqr~G 320 (393)
..|+.+++.-|
T Consensus 90 p~~ae~A~~~g 100 (166)
T COG1592 90 PVFAEVAEEEG 100 (166)
T ss_pred hHHHHHHHHcC
Confidence 66777777766
No 46
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=87.13 E-value=1.4 Score=39.07 Aligned_cols=55 Identities=16% Similarity=-0.013 Sum_probs=41.0
Q ss_pred hhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016230 222 TSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDP 278 (393)
Q Consensus 222 tsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP 278 (393)
.+.-|.++...|-.-+...+ .++|.+++++..||.||.+|+..+.+++..+ .-+|
T Consensus 24 g~~~E~~ai~~Y~y~~~~~~-~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~l-gg~p 78 (154)
T cd07908 24 GTNSELTAISQYIYQHLISE-EKYPEIAETFLGIAIVEMHHLEILGQLIVLL-GGDP 78 (154)
T ss_pred CcchHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 34456666666655544333 4799999999999999999999999998773 3344
No 47
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=86.76 E-value=4.3 Score=38.31 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=75.0
Q ss_pred hhHhHHhhhchhhhhhhhHHHHhHHhHcCC----CChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHH
Q 016230 160 TSWAIWTRAWTAEENRHGDLLNKYLYLSGR----VDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGN 235 (393)
Q Consensus 160 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgr----vDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~n 235 (393)
.++..=...=.-||-+|=.-..+-+.--|. ..+...-.....+++.| +| .--++.|+..++.| +=||..
T Consensus 48 ~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~-~p---~~llD~Llv~alIE---ARScER 120 (180)
T cd07910 48 PELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKG-EP---ERLLDRLLVAALIE---ARSCER 120 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccC-Ch---HHHHHHHHHHHHHH---HHhHHH
Confidence 444444455567888887666666544332 12222222233344443 21 23466788888888 457888
Q ss_pred HHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 016230 236 TARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFE 275 (393)
Q Consensus 236 tarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 275 (393)
.+.+|...-|+.|++....+..-|+|||.-|-++-..|+.
T Consensus 121 F~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 121 FALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 8898876689999999999999999999999999999996
No 48
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=86.16 E-value=2 Score=40.03 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=50.6
Q ss_pred CchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhC
Q 016230 214 NPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEID 277 (393)
Q Consensus 214 ~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 277 (393)
++...+.+.---|..---+|..+++. ..|+.+++++..||.||.+|..-|.+++.+....+
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~---~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAER---IEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44556777777888888899988776 55999999999999999999999999988765444
No 49
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=84.52 E-value=1.8 Score=44.16 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 226 ERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 226 E~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
|=.-++-|.-++|-.| ..+|+|+++.+..|+||+||..|--+.++.
T Consensus 85 EFSGflLYKEl~rrlk-~~~P~lae~F~~MaRDEARHAGFlNkam~d 130 (337)
T TIGR02029 85 EFSGFLLYKELSRRLK-NRDPVVAELFQLMARDEARHAGFLNKALGD 130 (337)
T ss_pred hhhhhHHHHHHHHhcC-CCChHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence 3333556777777655 369999999999999999999987766653
No 50
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=84.30 E-value=14 Score=32.05 Aligned_cols=113 Identities=10% Similarity=-0.023 Sum_probs=80.5
Q ss_pred CCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHH
Q 016230 155 TGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHG 234 (393)
Q Consensus 155 ~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ 234 (393)
.|.+...+...+.....||..|.|.|..-+..-|..-....+....+..-. -.+....++-..+-...--|..+...++
T Consensus 25 ~G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~-~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 103 (139)
T cd01043 25 KGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIK-EEPAGVLSAKEMVAELLEDYETLIEELR 103 (139)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999999999999999999666666444444432221111 1110112344556666667778888899
Q ss_pred HHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHH
Q 016230 235 NTARHAKEYGDLKLAQICGIIASDEKRHETAYTK 268 (393)
Q Consensus 235 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~ 268 (393)
...++|.+.||++.+.++..|-+++..|--+...
T Consensus 104 ~~i~~a~~~~D~~t~~ll~~il~~~ek~~w~l~a 137 (139)
T cd01043 104 EAIELADEAGDPATADLLTEIIRELEKQAWMLRA 137 (139)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888889999999999999999988776654
No 51
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=83.10 E-value=9.6 Score=34.34 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=80.2
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHh-HcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLY-LSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~-lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
-+.++.|.+.=..||-.|+..|-+|+. .-|++....+.... .....++...|-..-=.|+.-..+..++.
T Consensus 36 l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~---------~~~~~~~~e~~e~al~~Ek~v~~~i~~l~ 106 (160)
T cd00904 36 LKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPP---------SDEWGGTLDAMEAALKLEKFVNQALLDLH 106 (160)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCc---------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999994 44455544444321 00113566677677778888888889999
Q ss_pred hHHhHhCCHHHHHHHHH-hhhhhhHHHHHHHHHHHHHH
Q 016230 238 RHAKEYGDLKLAQICGI-IASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~l 274 (393)
++|.+.+|++....+.. .-.+-..-.+.+.+++..+-
T Consensus 107 ~~A~~~~D~~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~ 144 (160)
T cd00904 107 ELASEEKDPHLCDFLESHFLDEQVKEIKQVGDILTNLE 144 (160)
T ss_pred HHHHHCCCHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 77777777777777776543
No 52
>PRK13456 DNA protection protein DPS; Provisional
Probab=82.09 E-value=39 Score=32.16 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHhhc-ccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHh-H--cCCCChHhhHH
Q 016230 122 DDYFVVLVGDMITE-EALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLY-L--SGRVDMKQIEK 197 (393)
Q Consensus 122 dd~~v~Lv~~miTE-d~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~-l--sgrvDp~~lE~ 197 (393)
+.++..|.-++-+| .+.=-|...-..+.|+ ...+.+.++..=..||.+|++.|..=++ | +.-.||..+.
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~- 91 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGL------EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFH- 91 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHh-
Confidence 44555556666665 2333333333344444 4456778888878899999999986664 3 2333566443
Q ss_pred HHHHHhhcCCCCCCCCCc--hhhHhhhh-hhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 198 TIQYLIGSGMDPKTENNP--YLGFIYTS-FQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 198 t~~~li~~G~d~~~~~~p--~~~~vYts-fQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
.+.+++|-...+ +| +..++=.. .=|+..=..|+.+-+.+. -.||+=..|.-.|=+||..|+.-|.++++
T Consensus 92 ---~ls~~~~~~~p~-d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~~IL~dE~eH~~dl~~lL~--- 163 (186)
T PRK13456 92 ---DISACPDAYLPE-NPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLALAILQEEIEHEAWFSELLG--- 163 (186)
T ss_pred ---hhhcCccccCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 344566733322 22 44444444 347777778998888776 34999999999999999999999888764
Q ss_pred hhCCch
Q 016230 275 EIDPDG 280 (393)
Q Consensus 275 e~dPd~ 280 (393)
.-|.|
T Consensus 164 -~~~~~ 168 (186)
T PRK13456 164 -GGPSG 168 (186)
T ss_pred -cCCCc
Confidence 45554
No 53
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=81.73 E-value=5.6 Score=34.23 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=57.2
Q ss_pred hhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhH
Q 016230 160 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARH 239 (393)
Q Consensus 160 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarl 239 (393)
+.-..-...=..+|-+|...+++++---|..-+..-.+...+.+-..+ .++-.++-..-=.|..+-.+|..++..
T Consensus 27 ~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~~~~l~~~~~~E~~ai~~Y~~~~~~ 101 (125)
T cd01044 27 PENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYKLLARI-----FGPTFVLKLLERGEERAIEKYDRLLEE 101 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHH-----HhHHHHHHHHHHhHHhhHhhHHhhhhh
Confidence 345555666778899999999998844333221111111111111000 011111111123688888999977663
Q ss_pred HhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 016230 240 AKEYGDLKLAQICGIIASDEKRHETAYTKIVE 271 (393)
Q Consensus 240 a~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 271 (393)
..++.+|..||..|+.-+.++.+
T Consensus 102 ---------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 102 ---------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 45778899999999998887754
No 54
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=81.05 E-value=2.7 Score=43.07 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 016230 226 ERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVE 271 (393)
Q Consensus 226 E~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 271 (393)
|=.-++-|.-++|-.| ..+|+|+++.+..|+||+||..|--+.++
T Consensus 91 EFSGflLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (351)
T CHL00185 91 EFSGFLLYKELSRKLK-DKNPLLAEGFLLMSRDEARHAGFLNKAMS 135 (351)
T ss_pred hhhhhHHHHHHHHHhc-cCCcHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 3333556777777655 33799999999999999999988666554
No 55
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=81.00 E-value=2.7 Score=42.70 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 225 QERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 225 QE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
-|=.-++-|.-++|..+.. .|+|+++.+..|+||+||..|--+.++.
T Consensus 74 aEFSGflLYKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkam~d 120 (323)
T cd01047 74 SEFSGFLLYKELGRRLKNT-NPVVAELFRLMARDEARHAGFLNKALSD 120 (323)
T ss_pred hhhhhHHHHHHHHHHcccC-CcHHHHHHHHHhhhHHHHhhhHHHHHHH
Confidence 3444456688887765533 7999999999999999999987766653
No 56
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=80.76 E-value=2.5 Score=43.07 Aligned_cols=106 Identities=10% Similarity=0.103 Sum_probs=56.8
Q ss_pred hHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhH
Q 016230 140 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGF 219 (393)
Q Consensus 140 tY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~ 219 (393)
+|-++|..+-......-...-|..+|...|-..|||||+....-+ +.+|..+...+..+-.. |= -+.++
T Consensus 165 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~g~~~kLW~R-FF------LLsVf 233 (337)
T TIGR02029 165 GYWRYITIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALM----RSQPQLLNNWKAKLWSR-FF------LLSVY 233 (337)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHH----hcChhhhhhHHHHHHHH-HH------HHHHH
Confidence 355555544333222222235888999999999999999988766 35666654422221111 10 01233
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhh
Q 016230 220 IYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIAS 257 (393)
Q Consensus 220 vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAa 257 (393)
+-..+--.....+|..+|==+++++--| -++++.||+
T Consensus 234 aTmyl~d~~R~~Fy~alGld~~~yD~~V-i~~Tne~s~ 270 (337)
T TIGR02029 234 STMYLRDHQRPGFYEALGLDATDFDLQV-FRNTNETSG 270 (337)
T ss_pred HHHhhhhcccHHHHHHhCCCHHHhhHHH-HHHhhHHHH
Confidence 3333333444566777776565563333 334444443
No 57
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=80.28 E-value=2.9 Score=42.96 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=34.0
Q ss_pred hHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 229 TFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 229 T~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
-++-|.-++|..|.. +|.|+++.+..|+||+||..|--+.++.
T Consensus 98 GflLYKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkam~d 140 (355)
T PRK13654 98 GFLLYKELSRRLKDR-NPLLAELFQLMARDEARHAGFLNKAMKD 140 (355)
T ss_pred hHHHHHHHHHhcccc-CcHHHHHHHHHhhhHHHHhhhHHHHHHH
Confidence 345677777765533 8999999999999999999987766653
No 58
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=80.09 E-value=22 Score=35.81 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=89.2
Q ss_pred HHHHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHH-hHcCCC-ChHhhHHHH----
Q 016230 126 VVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRV-DMKQIEKTI---- 199 (393)
Q Consensus 126 v~Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrv-Dp~~lE~t~---- 199 (393)
..+......|-++=.-..++..... .+.+....---+.-|.||+.-+-.|. ++++.. ++. ....+
T Consensus 103 ~~l~p~~~~E~ga~~~~a~~~r~~~--------~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~-~~~~k~~W~ 173 (304)
T cd01058 103 RYLGPLRHVEHGLQMANAYVAQYAP--------STTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFD-GDAAKEAWE 173 (304)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCC-chHHHHHHh
Confidence 3444445555555544544444332 34566666667788888888877665 554432 221 11111
Q ss_pred --------HHHhhcCCCCCCCCCchhhHhhhhhh-h-hhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHH
Q 016230 200 --------QYLIGSGMDPKTENNPYLGFIYTSFQ-E-RATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269 (393)
Q Consensus 200 --------~~li~~G~d~~~~~~p~~~~vYtsfQ-E-~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 269 (393)
..++...+-. .+|...++...|+ | .-|...+..+.+.|...||..+..|..-+-.||.||..-=..+
T Consensus 174 ~dp~Wq~~R~~~E~~~~~---~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~s~q~d~~Rh~~~~~al 250 (304)
T cd01058 174 EDPAWQGLRELVEKLLVT---YDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGDTLTPLLTEFMLDDAQRHRRWTDAL 250 (304)
T ss_pred cCchhHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222211 2555665555443 3 3466667778888888999999999999999999999999999
Q ss_pred HHHHHhhCCc
Q 016230 270 VEKLFEIDPD 279 (393)
Q Consensus 270 v~~~le~dPd 279 (393)
|+-+++.+|+
T Consensus 251 vk~l~~~~~~ 260 (304)
T cd01058 251 VKTAAEDSPH 260 (304)
T ss_pred HHHHHccChh
Confidence 9977776666
No 59
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=79.95 E-value=26 Score=40.83 Aligned_cols=151 Identities=14% Similarity=0.018 Sum_probs=103.3
Q ss_pred HHHHhhcCCChhHHHHHHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCC
Q 016230 112 ELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVD 191 (393)
Q Consensus 112 ~lr~~~~~Lpdd~~v~Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvD 191 (393)
+|-.+.+-=.+-..-+|..++-.|...=.|-+.++.--. +..-......=..||.+|-+.|.+.+-- ..
T Consensus 849 ~~~~~~~~~~~~~~eil~~Ai~mE~~g~~FY~~~A~~a~--------~~~~K~lF~~LA~eE~~H~~~l~~~~~~--~~- 917 (1006)
T PRK12775 849 QALDRRKVEDAAALEAIRTAFEIELGGMAFYARAAKETS--------DPVLKELFLKFAGMEQEHMATLARRYHA--AA- 917 (1006)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-
Confidence 344444444456778899999999888887777765542 5677778888889999999988777621 11
Q ss_pred hHhhHHH-HH-HHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCH-HHHHHHHHhhhhhhHHHHHHHH
Q 016230 192 MKQIEKT-IQ-YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDL-KLAQICGIIASDEKRHETAYTK 268 (393)
Q Consensus 192 p~~lE~t-~~-~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdP-vLa~I~~~IAaDE~RH~~~Y~~ 268 (393)
|..-+.. .. ..+-.++... ..++...+-+..-.|..+-.+|..+++. +.|+ ..++|+..||.-|+.|.....+
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~al~lAm~~Ekdai~fY~~la~~---~~d~e~~k~l~~~LA~EEk~Hl~~L~~ 993 (1006)
T PRK12775 918 PSPTEGFKIERAAIMAGVKGR-PDDPGNLFRIAIEFERRAVKFFKERVAE---TPDGSVERQLYKELAAEEREHVALLTT 993 (1006)
T ss_pred CCcccccccchhhhhhhhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000 00 0010112111 2356777778888999999999988774 6687 5899999999999999999999
Q ss_pred HHHHHHhhC
Q 016230 269 IVEKLFEID 277 (393)
Q Consensus 269 iv~~~le~d 277 (393)
.++++-+=-
T Consensus 994 ~~d~~~~~~ 1002 (1006)
T PRK12775 994 EFERWKQGK 1002 (1006)
T ss_pred HHHHHhccC
Confidence 998765433
No 60
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=79.90 E-value=2.2 Score=43.23 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=57.0
Q ss_pred hHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhH
Q 016230 140 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGF 219 (393)
Q Consensus 140 tY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~ 219 (393)
+|-++|..+-......--..-|..+|...|-..|||||+...--+ +.+|..+...+..+-.. |= -+.++
T Consensus 155 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~~~~~kLW~R-FF------LlsVf 223 (323)
T cd01047 155 GYWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALL----RAQPHLLNDGKNKLWIR-FF------LLSVY 223 (323)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHH----hcChhhhhhHHHHHHHH-HH------HHHHH
Confidence 355555544333222222235888999999999999999988766 45666655432221111 00 01233
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhh
Q 016230 220 IYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIAS 257 (393)
Q Consensus 220 vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAa 257 (393)
+-..+--.....+|..+|==+++++-.|. ++++.||+
T Consensus 224 aTmyl~d~~R~~Fy~alGld~~~yD~~Vi-~~Tn~~s~ 260 (323)
T cd01047 224 ATMYLNDHQRPDFYEALGLDTTEFDMHVI-RETNETAA 260 (323)
T ss_pred HhheeeccchHHHHHHhCCCHHHhhHHHH-HHhhHHHH
Confidence 33333334445667777765655633333 34444443
No 61
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=79.36 E-value=2.9 Score=42.94 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=34.2
Q ss_pred hHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 229 TFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 229 T~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
-++-|..++|..|. .+|.|+++.+..|.||+||..|--+.++.
T Consensus 94 GflLYKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkam~D 136 (357)
T PLN02508 94 GFLLYKELGRRLKK-TNPVVAEIFTLMSRDEARHAGFLNKALSD 136 (357)
T ss_pred cchHHHHHHHhccc-CChHHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 34567888776552 47999999999999999999987776654
No 62
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=78.84 E-value=5.6 Score=37.49 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=80.7
Q ss_pred hhhchhhhhhhhHHHHhHHhHcCCCChHh-----hHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHH
Q 016230 166 TRAWTAEENRHGDLLNKYLYLSGRVDMKQ-----IEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHA 240 (393)
Q Consensus 166 v~~WTAEEnRHG~aLr~YL~lsgrvDp~~-----lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla 240 (393)
...-.-||.+|=...+..|-- |.+--+- .-+-...+++. .....-...++-+++-|. -||...|.+|
T Consensus 64 m~~larEEL~HFeqV~eilq~-RnI~~~~i~asrYa~~l~~~~rt----~EPqrliD~Livga~IEA---RScERfa~La 135 (203)
T COG4445 64 MVLLAREELHHFEQVLEILQA-RNIPYVPIPASRYAKGLLAAVRT----HEPQRLIDKLIVGAYIEA---RSCERFAALA 135 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCccccCCccHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhh---hhHHHHHhhc
Confidence 344556899998887777743 2222111 11111111111 111123557888888884 5788899998
Q ss_pred hHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh-CCchHHHHHHHHHHhcc
Q 016230 241 KEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEI-DPDGTVMALADMMKKKI 293 (393)
Q Consensus 241 ~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~-dPd~tm~Aia~mm~~~i 293 (393)
-.+ |..|++...-+-+-|+|||.-|..+-..|++. |=.+++.-|+.+=..-|
T Consensus 136 phl-deelakFY~gLl~SEaRHfqdYl~LA~qy~d~~dvs~rv~~~~~vEaeLi 188 (203)
T COG4445 136 PHL-DEELAKFYKGLLRSEARHFQDYLVLADQYFDEEDVSQRVDYFGIVEAELI 188 (203)
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 755 55999999999999999999999999999998 78888888877655333
No 63
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=78.60 E-value=5.8 Score=39.12 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=94.7
Q ss_pred hhchhhhhhhhHHHHhHHh-HcC-CCChHhhHHHHHHHhhcCCC------CCCCCCchhhHhhhhhhhhhhHHHHHHHHh
Q 016230 167 RAWTAEENRHGDLLNKYLY-LSG-RVDMKQIEKTIQYLIGSGMD------PKTENNPYLGFIYTSFQERATFISHGNTAR 238 (393)
Q Consensus 167 ~~WTAEEnRHG~aLr~YL~-lsg-rvDp~~lE~t~~~li~~G~d------~~~~~~p~~~~vYtsfQE~AT~ish~ntar 238 (393)
.+=..+|..|+..|-.|+- +-| ..|++.+.-.|. ...|. .+. .+=...++...|-+++-.+.+..+..
T Consensus 53 ~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~---~~~~rn~~l~e~p~-~dwa~~v~r~~l~d~~~~~~l~~l~~ 128 (263)
T PF05138_consen 53 ANIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRD---AREFRNLLLFEQPN-GDWADTVARQFLFDRAGKVLLEALAD 128 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHH---TTCS-SSGGGGS----SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcc---cchhhhhhhhccCC-CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456789999999999993 223 236666555433 11221 111 13344677778888888888777644
Q ss_pred HHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhC---CchHHHHHHHHHHhccCCCcccCCCCCccchhhHHHHH
Q 016230 239 HAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEID---PDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTV 315 (393)
Q Consensus 239 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d---Pd~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~sav 315 (393)
+.++.|++|+.+|-++|.-|..+-.+.+.++-.-. ...+..||..+..-.-.|=| ++ +. ...
T Consensus 129 ----ssy~pla~~a~k~~kEe~yH~~h~~~w~~rL~~gt~es~~r~q~Al~~~wp~~~elF~---~~--~~------~~~ 193 (263)
T PF05138_consen 129 ----SSYEPLAAIAAKILKEEAYHLRHGEDWLRRLGDGTEESRERMQAALDRLWPYTLELFG---PD--DS------EEA 193 (263)
T ss_dssp -----SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHCC----S---HC------HHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC---CC--ch------HHH
Confidence 66999999999999999999999999999988433 34455577776652112211 11 11 122
Q ss_pred HHHhcCCChhh-----HHHHHHHHHhcccccc
Q 016230 316 AQRLGVYTAKD-----YADILEFLVGRWNVEK 342 (393)
Q Consensus 316 aqr~GvYt~~d-----y~dIl~~ll~~W~v~~ 342 (393)
+...|+-...+ +.+.+.+++...++.-
T Consensus 194 l~~~~~~~~~~~lr~~w~~~v~~~l~~~gL~~ 225 (263)
T PF05138_consen 194 LAWGGRAPDNEELRQRWLAEVVPVLEEAGLEV 225 (263)
T ss_dssp HHCTTSSS-HHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33344332222 6667788888777653
No 64
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=77.97 E-value=2.8 Score=42.99 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=27.6
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 197 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~ 197 (393)
.-|..+|...|-..|||||+....-+ +.+|..+..
T Consensus 190 ~~PIFk~Fe~WCqDEnRHGd~Fa~lm----raqP~ll~g 224 (357)
T PLN02508 190 LYPIFKYFENWCQDENRHGDFFSALL----KAQPQFLND 224 (357)
T ss_pred cchHHHHHHHHhcccchhHHHHHHHH----HcChhhhhh
Confidence 35888999999999999999987766 345655544
No 65
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=77.75 E-value=5.5 Score=39.19 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=67.0
Q ss_pred CCCCCCCCC-CChHH-HHHHHHHhhcCCChhHHHHHHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhh
Q 016230 95 MDYLPEPES-EGFYE-QVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAE 172 (393)
Q Consensus 95 ~D~lPw~~~-~~F~~-~~~~lr~~~~~Lpdd~~v~Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAE 172 (393)
+-.|+|-.. ++|.- +..+|+ .--+...++...+.|.+...+...-. =.-|
T Consensus 61 ~~ll~~~~py~~~~~~~~~~~~----------~~~~~~~~~~~~~~P~~~eLv~~Ms~------------------LarE 112 (240)
T PF06175_consen 61 QALLAWLKPYEDFVYRKDGDIQ----------KNQLSKSLQPKSHYPEKEELVDKMSR------------------LARE 112 (240)
T ss_dssp -------------------------------------------------HHHHHHHHH------------------HHHH
T ss_pred cccccccccccccccccccccc----------cccccccccccccccccHHHHHHHHH------------------HHHH
Confidence 456777554 66653 333444 44555666777788887766654432 2347
Q ss_pred hhhhhHHHHhHHhHcCCCChHhhHHH--HHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHH
Q 016230 173 ENRHGDLLNKYLYLSGRVDMKQIEKT--IQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQ 250 (393)
Q Consensus 173 EnRHG~aLr~YL~lsgrvDp~~lE~t--~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~ 250 (393)
|-.|=.-.-+-+.- |.+.-..+.+. ...+++. ..-+.+.--+..|+..++.|. =|+...+.+|... |+.|++
T Consensus 113 EL~HFeqVl~im~~-RGi~l~~~~~d~Ya~~L~k~-vR~~ep~~lvDrLLv~AlIEA---RSCERF~lLa~~l-D~eL~~ 186 (240)
T PF06175_consen 113 ELHHFEQVLEIMKK-RGIPLGPDRKDRYAKGLRKH-VRKGEPERLVDRLLVGALIEA---RSCERFALLAEHL-DEELAK 186 (240)
T ss_dssp HHHHHHHHHHHHHH-TT---------SHHHHHHTT-S-SSTTHHHHHHHHHHHHHHH---HHHHHHHHHGGGS--HHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCCCCCcCHHHHHHHHh-ccCCchHhHHHHHHHHHhHhh---hhHHHHHHHHHhh-CHHHHH
Confidence 77775554444422 22221222211 2222222 111111234567888999994 5688888888877 999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhC
Q 016230 251 ICGIIASDEKRHETAYTKIVEKLFEID 277 (393)
Q Consensus 251 I~~~IAaDE~RH~~~Y~~iv~~~le~d 277 (393)
....+..=|+|||.-|.++-..|+..+
T Consensus 187 FY~~Ll~SEArHy~~yl~LA~~y~~~~ 213 (240)
T PF06175_consen 187 FYRSLLRSEARHYQDYLKLARQYFDED 213 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS-HH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHCCcc
Confidence 999999999999999999988887653
No 66
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=77.40 E-value=11 Score=33.15 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=61.7
Q ss_pred hhhhhhhhHHHHhHHhHcCCCChHhhHH-----H--HHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhH
Q 016230 170 TAEENRHGDLLNKYLYLSGRVDMKQIEK-----T--IQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKE 242 (393)
Q Consensus 170 TAEEnRHG~aLr~YL~lsgrvDp~~lE~-----t--~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~ 242 (393)
..+|.+|-+.|..-+---+--+|..-.. . ...++..| ..+....+-..+-.|...--+|..+++ .
T Consensus 36 a~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~-----~~s~~~al~~g~~~E~~~i~~ye~~~~---~ 107 (135)
T cd01048 36 AESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQG-----PKSLQDALEVGVLIEELDIADYDRLLE---R 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 4789999999988874222222221110 0 00111111 124456677777889999999997765 5
Q ss_pred hCCHHHHHHHHHhhhhhhHHHHHHHH
Q 016230 243 YGDLKLAQICGIIASDEKRHETAYTK 268 (393)
Q Consensus 243 ~gdPvLa~I~~~IAaDE~RH~~~Y~~ 268 (393)
+.|+.+++++.+++.-|..|+..|.+
T Consensus 108 ~~d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 108 TQNPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999998876
No 67
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=76.94 E-value=3.5 Score=42.27 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=47.3
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHh
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTAR 238 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 238 (393)
.-|..+|...|-..||||||....-+ +.+|..+...+..+-.. |= -+.+|+-..+--.....+|..+|=
T Consensus 190 ~~PIF~~FE~WCqDEnRHGdfF~alm----raqP~ll~g~~~kLW~R-FF------LlsVfaTmyl~d~~R~~Fy~alGl 258 (351)
T CHL00185 190 IYPIFKFFESWCQDENRHGDFFAALL----KSQPHLLNGWKARLWCR-FF------LLSVFATMYLNDLQRSDFYAAIGL 258 (351)
T ss_pred cchHHHHHHHHhcccchhHHHHHHHH----hcChhhhhhHHHHHHHH-HH------HHHHHHHheehhcchHHHHHHhCC
Confidence 35788999999999999999988766 34666654422221111 00 012333333333334556777665
Q ss_pred HHhHhCCHHHHHHHHHhh
Q 016230 239 HAKEYGDLKLAQICGIIA 256 (393)
Q Consensus 239 la~~~gdPvLa~I~~~IA 256 (393)
=+++++--|. ++++.||
T Consensus 259 d~~~yD~~Vi-~~Tn~~a 275 (351)
T CHL00185 259 DARQFDMHVI-RKTNESA 275 (351)
T ss_pred CHHHhhHHHH-HHhhHHH
Confidence 5555533332 3344444
No 68
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=74.89 E-value=2.6 Score=43.26 Aligned_cols=54 Identities=19% Similarity=0.379 Sum_probs=34.5
Q ss_pred hHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHH
Q 016230 140 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 197 (393)
Q Consensus 140 tY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~ 197 (393)
+|-++|..+-......--..-|..+|...|-..|||||+...--+ +.+|..+..
T Consensus 175 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----raqP~ll~g 228 (355)
T PRK13654 175 GYWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLM----RAQPKLLKG 228 (355)
T ss_pred hHHHHHHHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHH----hcCchhhcc
Confidence 355555544333222111235788999999999999999988766 345555543
No 69
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=74.22 E-value=25 Score=34.28 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=55.6
Q ss_pred hhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCH
Q 016230 167 RAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDL 246 (393)
Q Consensus 167 ~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdP 246 (393)
..|++||.-=+.=+.+|--+ ++. |+ ..+. ..+.+-++-|..-.... +..+......|
T Consensus 29 ~fW~peEi~~~~D~~~~~~L----s~~--e~---~~~~------------~~l~~~~~~D~~v~~~l--~~~i~~~~~~~ 85 (281)
T PF00268_consen 29 NFWTPEEIDMSKDIKDWKKL----SEE--ER---EAYK------------RILAFFAQLDSLVSENL--LPNIMPEITSP 85 (281)
T ss_dssp T---GGGS-GGGHHHHHHHS-----HH--HH---HHHH------------HHHHHHHHHHHHHHHHH--HHHHHHHCSSH
T ss_pred CCCCchhcChhhhHHHHHhC----CHH--HH---HHHH------------HHHHHHHHHHhHHHhhH--HHHHHHHcCHH
Confidence 58999998877777777643 121 22 1211 24444444443333222 13334456799
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016230 247 KLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG 280 (393)
Q Consensus 247 vLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 280 (393)
-+..+++..+..|+.|..+|..+++.+. .++..
T Consensus 86 E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~ 118 (281)
T PF00268_consen 86 EIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKE 118 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHH
Confidence 9999999999999999999999999987 44443
No 70
>PRK15022 ferritin-like protein; Provisional
Probab=69.78 E-value=80 Score=29.32 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=74.9
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcC-CCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSG-RVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsg-rvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
.+.++.|.+.=..||--|+.-|-+|+.-.| +|--..+..- +...+++...|-.+-=+|+.-..+..++.
T Consensus 36 L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P----------~~~~~s~~e~fe~al~hEk~vt~~I~~L~ 105 (167)
T PRK15022 36 LNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVP----------GEKLNSLEELFQKTLEEYEQRSSTLAQLA 105 (167)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999995433 3333332221 11224777888888889999999999999
Q ss_pred hHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 238 RHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
++|.+.+|+.....+.--=....-=++-+.++++++-
T Consensus 106 ~~A~~~~D~~t~~FL~wfv~EQ~eEe~~~~~ild~l~ 142 (167)
T PRK15022 106 DEAKALNDDSTLNFLRDLEKEQQHDGLLLQTILDEVR 142 (167)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887776443333322334555554433
No 71
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=67.73 E-value=31 Score=33.76 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=28.7
Q ss_pred hCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 243 YGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 243 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
.++|-.+..++..+.+|++|..+|..+++.+.
T Consensus 75 ~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~ 106 (280)
T cd07911 75 EGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVG 106 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788899999999999999999999998874
No 72
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=66.44 E-value=9.3 Score=44.33 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=41.2
Q ss_pred hhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 222 TSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 222 tsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
..=-|.....||..+++ ..++|.+++|...+|..|..|+..+.++++.
T Consensus 868 Ai~mE~~g~~FY~~~A~---~a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 868 AFEIELGGMAFYARAAK---ETSDPVLKELFLKFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred HHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33458899999997765 5679999999999999999999999888764
No 73
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=64.11 E-value=9.3 Score=33.68 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=38.7
Q ss_pred hHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 218 GFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 218 ~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
.+.|.-=-|.-...+|..++.. +| +.++...||..|.+|+.+..++++++
T Consensus 4 ~L~~Ale~Ek~a~~~Y~~~~~k---~~---~~~~F~~la~~E~~H~~~l~~L~~~~ 53 (135)
T cd01048 4 ALLYALEEEKLARDVYLALYEK---FG---GLRPFSNIAESEQRHMDALKTLLERY 53 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hc---CcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455677888899977664 54 78999999999999999888877653
No 74
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=59.66 E-value=26 Score=30.69 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 225 QERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 225 QE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
.|......|-..+..++..|-|.++..+..+|.+|..|...+.+++..
T Consensus 14 ~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~ 61 (156)
T cd01055 14 LELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLND 61 (156)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888888888899999999999999999999988887754
No 75
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=58.64 E-value=87 Score=31.65 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=76.5
Q ss_pred hHHhhhchhhhhhhhHHHHhHH-hHcCCCChHhhHHHH---------------HHHhhcCCCCCCCC-------------
Q 016230 163 AIWTRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKTI---------------QYLIGSGMDPKTEN------------- 213 (393)
Q Consensus 163 ~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~t~---------------~~li~~G~d~~~~~------------- 213 (393)
..-+..=+.||--|=..|..=+ .+.+.+.....+..- ++.+..|--+..-+
T Consensus 56 kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~ 135 (283)
T PF05067_consen 56 KDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQA 135 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhh
Confidence 4556667789999988888877 455555555554442 34555555443221
Q ss_pred --CchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhC
Q 016230 214 --NPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEID 277 (393)
Q Consensus 214 --~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 277 (393)
|++.-|-.-..=|..-++-|.++-++ ++||..+++|+-+-+=|.-|...|.+.++.+-+..
T Consensus 136 sGdl~aDL~~NiaAE~~AR~~yerL~~m---TdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 136 SGDLIADLRSNIAAEQRARLQYERLYEM---TDDPGVKDMLSFLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44445666667777777778877665 78999999999999999999999999998877766
No 76
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=56.51 E-value=20 Score=33.50 Aligned_cols=43 Identities=30% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 016230 233 HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFE 275 (393)
Q Consensus 233 h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 275 (393)
|-..+..|+..|+...+.-...++.||++|...|+..++.+.+
T Consensus 89 yp~~ae~A~~~g~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~~ 131 (166)
T COG1592 89 YPVFAEVAEEEGFKEAARSFRAAAKAEKRHAEMFRGLLERLEE 131 (166)
T ss_pred ChHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344556777898999999999999999999999999988754
No 77
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=53.64 E-value=33 Score=29.79 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 226 ERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 226 E~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
|.....-|.+.+..++..+-+.++..+..+|.||..|..-+.+.+..
T Consensus 17 E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 17 ELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667878888877889999999999999999999888777754
No 78
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=52.45 E-value=33 Score=28.53 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 233 HGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 233 h~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
|..||+=|...||.||++=|- -|..+|.+|+...-
T Consensus 42 Y~~LArDA~ssGDrV~aEny~-------QHAeHY~Ril~~~~ 76 (80)
T PF13763_consen 42 YNQLARDAQSSGDRVLAENYL-------QHAEHYFRILAAAQ 76 (80)
T ss_pred HHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 999999888899999998886 79999999997654
No 79
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=49.99 E-value=1.4e+02 Score=28.10 Aligned_cols=111 Identities=24% Similarity=0.192 Sum_probs=77.2
Q ss_pred chhHhHHhhhchhhhhhhhHHHHhHHhHcCC-CChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHH
Q 016230 159 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGR-VDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTA 237 (393)
Q Consensus 159 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgr-vDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 237 (393)
.+..+.|++.=+.||..|+.-|-+|+.-+|. +--..++. .+.+ ..+|...|--+-=+|.--..+-.+++
T Consensus 36 l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~-------P~~~---~~s~~e~f~~tlehEq~vt~~I~~L~ 105 (167)
T COG1528 36 LPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEA-------PPNK---FSSLKELFEKTLEHEQKVTSSINELA 105 (167)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCC-------Cccc---cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999955332 11111211 1111 13677777777778888888888999
Q ss_pred hHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016230 238 RHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD 279 (393)
Q Consensus 238 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 279 (393)
.+|.+.+|-.--.-++---++-..-+.-+..|++++--+.-+
T Consensus 106 ~~a~~~kD~~T~nFLqWfv~EQ~eEe~l~~~I~d~~~~ag~~ 147 (167)
T COG1528 106 EVAREEKDYATFNFLQWFVAEQVEEEKLFKTILDKLELAGND 147 (167)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 988888777766666666666666667777777765444433
No 80
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=46.24 E-value=68 Score=32.51 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=66.5
Q ss_pred hhhHhhhhhhhhhhHHHHHHHHhHHhHhCC----HHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHh
Q 016230 216 YLGFIYTSFQERATFISHGNTARHAKEYGD----LKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKK 291 (393)
Q Consensus 216 ~~~~vYtsfQE~AT~ish~ntarla~~~gd----PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~ 291 (393)
...++..++.|-+.-.||++++++- ..| +...+..++=.+.|+||-.+-.+++-..=.+||...=......+++
T Consensus 61 ~~~l~~~~itEd~LP~Y~~~L~~~f--~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~ 138 (297)
T cd01050 61 RVALVGNLLTEEALPTYHSMLNRLF--GLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGS 138 (297)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHc--CcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Confidence 4468888999999999999998862 234 8899999999999999999988888777777888877777777777
Q ss_pred ccCCCc
Q 016230 292 KISMPA 297 (393)
Q Consensus 292 ~i~MP~ 297 (393)
.|.+|.
T Consensus 139 G~~~~~ 144 (297)
T cd01050 139 GFDPGT 144 (297)
T ss_pred CCCCCC
Confidence 888765
No 81
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.01 E-value=2.9e+02 Score=27.66 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=52.0
Q ss_pred HHhHHhHhCCHHHHHHHHHhhhhhhHHHH---HHHHHHHHHHhhCCchHHHHHHHHHHhccCCCcccCCCCCccchhhHH
Q 016230 236 TARHAKEYGDLKLAQICGIIASDEKRHET---AYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHF 312 (393)
Q Consensus 236 tarla~~~gdPvLa~I~~~IAaDE~RH~~---~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~ 312 (393)
.+|++ ++||-.-..|+..|=.||.-|-+ -+++++.+=-..|| +.-|...+++.+.-|-.. .+
T Consensus 180 ~aK~~-~~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~r~gldp---~~~FreL~r~y~~~~lkg--~~--------- 244 (268)
T COG2833 180 RAKLA-ETGDSEAAAILDIILRDEIGHVAIGNKWYRFLCARRGLDP---AATFRELVRAYFRFILKG--PF--------- 244 (268)
T ss_pred HHHHH-HcCchHHHHHHHHHHhccccceeechHHHHHHHHhcCCCh---HHHHHHHHHHhCCcccCC--cc---------
Confidence 34555 48899999999999999999964 45555555555566 666777776444433222 22
Q ss_pred HHHHH-HhcCCChhhHHHHHH
Q 016230 313 STVAQ-RLGVYTAKDYADILE 332 (393)
Q Consensus 313 savaq-r~GvYt~~dy~dIl~ 332 (393)
-..|. ++| +|...|+.|-+
T Consensus 245 N~~AR~~AG-fT~~e~d~i~~ 264 (268)
T COG2833 245 NIDARAKAG-FTQSEYDSIEA 264 (268)
T ss_pred cHHHHHHcC-CCHHHHHHHHH
Confidence 12222 466 89888877654
No 82
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=44.62 E-value=1.1e+02 Score=32.54 Aligned_cols=195 Identities=23% Similarity=0.256 Sum_probs=110.6
Q ss_pred hhHHHHHHhHHHHHHHhH--hhccc----------------cccCCCCCCCCCCCC------------C--CChHH--HH
Q 016230 65 QKMEIFKSLEGWAEENIL--VHLKP----------------VEKCWQPMDYLPEPE------------S--EGFYE--QV 110 (393)
Q Consensus 65 ~~~ev~~~Le~~v~~~~~--~hl~~----------------ve~~WqP~D~lPw~~------------~--~~F~~--~~ 110 (393)
+...|.+.||+|-...+. .-+.| .-+.|--.||+.-++ . =.|.+ +.
T Consensus 15 ~dr~l~raLe~wqp~~l~WW~d~gP~~~~~~~vyLRtavsVdp~gWA~f~~VkmpdYRWGifL~P~~~~r~I~fG~hkGe 94 (471)
T TIGR03225 15 EDRKLQRALEQWQPGYIDWWKDMGPEGFQESEVYLRTAVSVDPKGWAKFDHVKMPDYRWGIFLAPQEEDRKIPFGEHKGE 94 (471)
T ss_pred ccHHHHHHHHhcCchHHHHHHhhCcccCcccceEEEeeeeecCccccccCcccCcccceeeeecCcccCceecccccccc
Confidence 345677777777554442 11112 235677777775433 1 12444 34
Q ss_pred HHHHHhhcCCChhHHHHHHHHHh----hcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHH-h
Q 016230 111 KELRERCKEIPDDYFVVLVGDMI----TEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-Y 185 (393)
Q Consensus 111 ~~lr~~~~~Lpdd~~v~Lv~~mi----TEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~ 185 (393)
..|++ +|.+++..|.--.. ||-+.=-=|+.|...-+ |--+ -+-+-+=-.||.||+=++-.-| -
T Consensus 95 ~awqe----vPgE~r~~L~riIv~QgDtEpASVEQqr~lg~taP-------SlyD-~rnlfqvnvEEgRHlWaMvyLL~k 162 (471)
T TIGR03225 95 PAWQE----VPGEYRSMLRRLIVIQGDTEPASVEQQRHLGLTAP-------SLYD-LRNLFQVNVEEGRHLWAMVYLLHK 162 (471)
T ss_pred chHhh----CCHHHHHHHHHHHhhccCCCchhHHHHHHhhccCC-------cHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46654 99998877664444 34333333333211110 0111 1223346789999997765444 1
Q ss_pred HcCCCChHhhHHHHHHHhhc--------CCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhh
Q 016230 186 LSGRVDMKQIEKTIQYLIGS--------GMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIAS 257 (393)
Q Consensus 186 lsgrvDp~~lE~t~~~li~~--------G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAa 257 (393)
--|+-.-++.|.......++ .|+..+. +=+..|.+|+|--+.-..--. .++. ++=.-|+++|.-.-.
T Consensus 163 ~FG~dGreeAe~LL~rrsGd~d~PRiL~AFN~~t~-dWlsffmFT~ftDRdGk~QL~---alae-S~FdPLaRt~rfMlt 237 (471)
T TIGR03225 163 YFGRDGREEAEALLRRRSGDADNPRILGAFNEKTP-DWLSFFMFTYFTDRDGKMQLA---ALAE-SGFDPLSRTCRFMLT 237 (471)
T ss_pred HHCCccHHHHHHHHHhhcCCCCCcchhhhccCCCc-cHHHHhHhheeecccchhhHH---HHHh-cCCchHhhhhHHHhh
Confidence 23555555555554433333 2333332 346789999999887665444 3333 554448999999999
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 016230 258 DEKRHETAYTKIVEKLFEI 276 (393)
Q Consensus 258 DE~RH~~~Y~~iv~~~le~ 276 (393)
.|+-|+.+=..-|++++++
T Consensus 238 EEahHmfvGetGv~rviqr 256 (471)
T TIGR03225 238 EEAHHMFVGESGVGRVIER 256 (471)
T ss_pred hhHhHhhhhhHHHHHHHHH
Confidence 9999998888777776654
No 83
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=43.26 E-value=91 Score=26.83 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 016230 226 ERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALAD 287 (393)
Q Consensus 226 E~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~ 287 (393)
|......|.+....++..+.+.++..+..++.+|..|...+.+.+.. +.-.|...+..+..
T Consensus 18 e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~-lGg~p~~~~~~~~~ 78 (148)
T cd01052 18 EWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYE-LGGTPPRDPKDWYE 78 (148)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHHHH
Confidence 44445567777777776778899999999999999999999888876 77778876644433
No 84
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=42.42 E-value=59 Score=31.26 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHhHHhHhCCHHHHHHHHHhhh--------------hhhHH--HHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 016230 227 RATFISHGNTARHAKEYGDLKLAQICGIIAS--------------DEKRH--ETAYTKIVEKLFEIDPDGTVMALADMMK 290 (393)
Q Consensus 227 ~AT~ish~ntarla~~~gdPvLa~I~~~IAa--------------DE~RH--~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 290 (393)
.+-.-||..+++ .+++|+|..+++.|.. ..... ...+.+|++++...||+.+-.++...+.
T Consensus 149 ~aD~~FH~aIa~---as~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~am~~hl~ 225 (241)
T COG2186 149 EADLAFHLAIAE---ASGNPVLLLLLEALWDLLRRSVRASTLAALARDETVVLEEHRAIVDAIAAGDPDAAREAMRAHLE 225 (241)
T ss_pred HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHhhchhhcccccchhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455778998876 5889999999886550 11122 5778899999999999998888777775
No 85
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=41.56 E-value=62 Score=29.49 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=43.3
Q ss_pred HhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 016230 219 FIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFE 275 (393)
Q Consensus 219 ~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 275 (393)
-.-.++-|..+.+-|-.-+-..+ .+|.++.++..||.+|..|...+...+..+.+
T Consensus 28 ~~gG~~gEl~ai~qYl~q~~~~~--~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~ 82 (156)
T cd01051 28 QLGGAFGELSAAMQYLFQSFNFR--EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK 82 (156)
T ss_pred HhCCccHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445567777777665555432 68999999999999999999999999988776
No 86
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=41.10 E-value=2.8e+02 Score=27.26 Aligned_cols=117 Identities=11% Similarity=-0.010 Sum_probs=71.4
Q ss_pred chhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHH-hhc--CCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCC
Q 016230 169 WTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYL-IGS--GMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGD 245 (393)
Q Consensus 169 WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~l-i~~--G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gd 245 (393)
=..+|.-|+..|-.|+---+..|.+.|.-.|... .++ =++.+. .|=-..++-..|...+..+.+..+ .+ +.+
T Consensus 31 ialD~lGhAr~~y~~a~el~g~~ed~La~~R~~~~frn~~l~e~P~-gdwa~tv~r~~l~d~~~~~~l~~L---~~-ss~ 105 (237)
T TIGR02158 31 IALDLLGHARMFLSLAGQLGGGDEDTLAFFRDEAEFRNLRLTELPN-GDFALTIARQFLYDAYKVLLLEAL---TQ-SRD 105 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHhcChHHhhhhHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHH---Hh-CCc
Confidence 3457888999999999332233666554221110 000 111111 122233444455566665555544 33 669
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCC---chHHHHHHHHHH
Q 016230 246 LKLAQICGIIASDEKRHETAYTKIVEKLFEIDP---DGTVMALADMMK 290 (393)
Q Consensus 246 PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP---d~tm~Aia~mm~ 290 (393)
+.|+.|+.+|-+.|..|..+=.+.+.++-+-.. ..+-.|+..+..
T Consensus 106 ~pla~ia~K~~kEe~yH~~h~~~w~~rL~~gt~es~~r~Q~Ald~~wp 153 (237)
T TIGR02158 106 VPLAAIAAKALKEARYHLQHAKTWLERLGLGTEESHRRLQEALNELWP 153 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999775433 234446766665
No 87
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=39.50 E-value=51 Score=33.12 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHhHHhHhC---CHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 234 GNTARHAKEYG---DLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 234 ~ntarla~~~g---dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
.|++.++.... -|-.+..+...+.+|++|..+|..+++.+
T Consensus 80 ~nl~~~i~~~~~~~~~e~~~~l~~q~~~EaiH~e~Y~~~le~l 122 (311)
T PRK08326 80 LDIQPLISAMAAEGRLEDEMYLTQFAFEEAKHTEAFRRWFDAV 122 (311)
T ss_pred HHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444333 38889999999999999999999999765
No 88
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=38.29 E-value=46 Score=27.27 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=30.8
Q ss_pred HHHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHHHHhch
Q 016230 330 ILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGR 374 (393)
Q Consensus 330 Il~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 374 (393)
++-|-..+|+... |||++- ++-|..|..+.+|++||.+.-
T Consensus 22 L~lHY~sk~~~~~--gLs~~d---~~~L~~L~~~a~rm~eRI~tL 61 (75)
T PF06667_consen 22 LILHYRSKWKSSQ--GLSEED---EQRLQELYEQAERMEERIETL 61 (75)
T ss_pred HHHHHHHhcccCC--CCCHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888654 898653 567888899999999998754
No 89
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=37.89 E-value=57 Score=31.66 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=29.8
Q ss_pred hCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 016230 243 YGDLKLAQICGIIASDEKRHETAYTKIVEKLFE 275 (393)
Q Consensus 243 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 275 (393)
.+.|-.+..++..+.+|+.|-.+|..+++.+..
T Consensus 74 ~~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~ 106 (288)
T cd01049 74 VQIPEARAFYGFQAFMENIHSESYSYILDTLGK 106 (288)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 358999999999999999999999999988764
No 90
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.65 E-value=46 Score=27.44 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=29.5
Q ss_pred HHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHHHHhch
Q 016230 331 LEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGR 374 (393)
Q Consensus 331 l~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 374 (393)
+-|-..+|+... |||++ -+..|..|-.+++|++||.+.-
T Consensus 23 ~LHY~sk~~~~~--~Ls~~---d~~~L~~L~~~A~rm~~RI~tL 61 (75)
T PRK09458 23 WLHYRSKRQGSQ--GLSQE---EQQRLAQLTEKAERMRERIQAL 61 (75)
T ss_pred HHhhcccccCCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788775 89965 4456888899999999998854
No 91
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=34.90 E-value=54 Score=32.86 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHH--HHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhccCCCcccCCCCCccchhhHHHHHHHHhcCCC
Q 016230 246 LKL--AQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYT 323 (393)
Q Consensus 246 PvL--a~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~savaqr~GvYt 323 (393)
|.| +-++.+|..||..|-..|+.+.+.+.-..+...+..+.+--. |...+-. |-
T Consensus 46 P~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g~~---------------------k~n~~~n---~P 101 (265)
T COG3396 46 PTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDGRH---------------------KRNSLFN---LP 101 (265)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHH---------------------HHHHHHc---CC
Q ss_pred hhhHHH--HHHHHHhccccccccCCCH
Q 016230 324 AKDYAD--ILEFLVGRWNVEKLTGLSG 348 (393)
Q Consensus 324 ~~dy~d--Il~~ll~~W~v~~l~gL~~ 348 (393)
.-+|+| |..+|++.|++..++.|.+
T Consensus 102 ~~~Wadt~~~~fLvD~~~~~~l~~l~~ 128 (265)
T COG3396 102 TGDWADTIVRGFLVDGAAIYQLEALAD 128 (265)
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHHHh
No 92
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=33.86 E-value=91 Score=28.98 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=30.6
Q ss_pred hCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016230 243 YGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG 280 (393)
Q Consensus 243 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 280 (393)
.++|.++..+..++..|.+|...|.+.+.+ +..-|.-
T Consensus 26 ~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~-~~~rps~ 62 (165)
T cd01042 26 ARDPAVRPLIKEMLDEEKDHLAWFEELLPE-LGVRPSL 62 (165)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCch
Confidence 468999999999999999999999999965 3334543
No 93
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=32.10 E-value=73 Score=26.67 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 016230 259 EKRHETAYTKIVEKLFEIDPDGTVMALADMMK 290 (393)
Q Consensus 259 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 290 (393)
|.+|..+|.++... +.+.|+.+...|..|++
T Consensus 9 e~~~~~~f~~~~~~-l~~~~~~~~~~f~~Va~ 39 (100)
T smart00337 9 NKRYERAFSSFSAQ-LHVTPGTAIELFGEVAT 39 (100)
T ss_pred HHHHHHHHHHHHHH-hCCCcccHHHHHHHHHH
Confidence 67899999998888 77788888888988887
No 94
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=28.74 E-value=3e+02 Score=25.76 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=49.3
Q ss_pred hhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHH-----------H--
Q 016230 171 AEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNT-----------A-- 237 (393)
Q Consensus 171 AEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nt-----------a-- 237 (393)
.-|.+|=+++..-+---|-.||.. +...+...+|-..=.|..+.+.+..+--.++ .
T Consensus 36 ~SEq~Hmdav~~Ll~kY~l~dP~~-----------~~~~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~iEe~dI~DL 104 (162)
T PF09968_consen 36 RSEQRHMDAVKALLEKYGLEDPVE-----------GDPVGVFTNPELQELYNQLVEQGSKSLEDALKVGALIEELDIADL 104 (162)
T ss_dssp HHHHHHHHHHHHHHHHTT---S-S-----------S-STT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-----------cCCCCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHHHHHhhHHHH
Confidence 379999888776664434445543 2333444556555666666666555432222 1
Q ss_pred -hHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 238 -RHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 238 -rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
+....++++.+..+..++-.==..|..+|.+.++.
T Consensus 105 ~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r~L~~ 140 (162)
T PF09968_consen 105 EEALARTDNEDIKTVYENLRRGSRNHLRAFVRQLER 140 (162)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334667778888777765556788888887764
No 95
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=27.75 E-value=4.1e+02 Score=24.85 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=71.7
Q ss_pred hhHhHHhhhchhhhhhhhHHHHh-HHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHh
Q 016230 160 TSWAIWTRAWTAEENRHGDLLNK-YLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTAR 238 (393)
Q Consensus 160 ~~W~~Wv~~WTAEEnRHG~aLr~-YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 238 (393)
...+.....=.-||-+|++-|-. -|.+-|--|...+.+ ..++ .+.-..+-.----|+.-.-.+++.-.
T Consensus 38 ~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~---------l~iG--~tv~E~L~~DL~~E~~a~~~lk~~i~ 106 (157)
T COG2193 38 TKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGK---------LRIG--ETVKEMLEADLALEYEARDALKEAIA 106 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc---------cccC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556789999997754 447777767666665 2222 23334555566678888888888888
Q ss_pred HHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 016230 239 HAKEYGDLKLAQICGIIASDEKRHETAYTKIVE 271 (393)
Q Consensus 239 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 271 (393)
.+...+|.|-+.++..|-+||.-|--+--..++
T Consensus 107 ~~e~~~Dyvsrdl~~~iL~deEEHid~LetqL~ 139 (157)
T COG2193 107 YCEEVQDYVSRDLLEEILADEEEHIDWLETQLD 139 (157)
T ss_pred HHHhcccchHHHHHHHHHcchHHHHHHHHHHHH
Confidence 888889999999999999999998776655543
No 96
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=27.09 E-value=1.3e+02 Score=29.20 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHh
Q 016230 259 EKRHETAYTKIVEKLFEIDPDGTVMALADMMKK 291 (393)
Q Consensus 259 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~ 291 (393)
|.+|..+|.++.+. |.+.|+.+-..|..|+.+
T Consensus 79 e~~~~~~f~~m~~q-L~it~~~a~~~F~~Va~e 110 (213)
T TIGR00865 79 ERRYRRAFSDMTSQ-LHITPFTARQSFFQVAAE 110 (213)
T ss_pred HHHHHHHHHHHHHH-hCCCCccHHHHHHHHHHH
Confidence 78999999999998 788899999999999973
No 97
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=26.48 E-value=6.9e+02 Score=25.34 Aligned_cols=154 Identities=14% Similarity=0.070 Sum_probs=84.6
Q ss_pred hhhhhhhhHHHHhHH-hHcCCCChHhhH---HHHHHHhhcCCCCCCCCCchhhHhhh----hhhhhhhHHHHHHHHhHHh
Q 016230 170 TAEENRHGDLLNKYL-YLSGRVDMKQIE---KTIQYLIGSGMDPKTENNPYLGFIYT----SFQERATFISHGNTARHAK 241 (393)
Q Consensus 170 TAEEnRHG~aLr~YL-~lsgrvDp~~lE---~t~~~li~~G~d~~~~~~p~~~~vYt----sfQE~AT~ish~ntarla~ 241 (393)
..+|.-||..|-.|+ -+ |.-+.+.+. +..... .+=|+. |...++.+ .|...+-.+.+ ..|.+
T Consensus 63 aqDelGHar~ly~~a~~L-G~~r~ed~~a~~r~~~~f-~nl~e~-----P~~dwA~tivr~~l~D~~~~~~~---~~L~~ 132 (289)
T TIGR02156 63 VQDEAGHGLYLYAAAETL-GVSREELLDALLTGKAKY-SSIFNY-----PTLTWADIGVIGWLVDGAAIMNQ---TPLCR 132 (289)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCcHHHHHHHhcChHhh-ccchhC-----CCCCHHHHHHHHHHHHHHHHHHH---HHHhc
Confidence 456788999999998 33 442333222 211111 111333 33333333 23333333333 34443
Q ss_pred HhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCc---hHHHHHHHHHHhccCCCcccCCCCCccchhhHHHHHHHH
Q 016230 242 EYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPD---GTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQR 318 (393)
Q Consensus 242 ~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd---~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~savaqr 318 (393)
+-++.|+.|+.+|-+.|.-|..+=.+.|.++-+-.+. .+-.||..+..-...|=| .+|.. ...++.+.+
T Consensus 133 -SSy~plA~ia~Ki~KEe~yH~rh~~~wl~rL~~GT~esr~r~Q~Ald~~Wp~~~emFg--~~d~e-----~~~~~~~~~ 204 (289)
T TIGR02156 133 -CSYGPYSRAMVRICKEESFHQRQGYEIMLTLARGTQEQRQMAQDALNRWWWPSLMMFG--PHDAD-----SPNSGQSTK 204 (289)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcC--CCchh-----hhhHHHHHh
Confidence 6699999999999999999999999999998653222 234466666652222211 11111 123445556
Q ss_pred hcCC--Chhh----HHHHHHHHHhccccc
Q 016230 319 LGVY--TAKD----YADILEFLVGRWNVE 341 (393)
Q Consensus 319 ~GvY--t~~d----y~dIl~~ll~~W~v~ 341 (393)
.||- ++.+ +.+.+.+++..-++.
T Consensus 205 ~Gi~~~~n~eLR~~w~~~v~~~l~~agL~ 233 (289)
T TIGR02156 205 WKIKRNSNDELRQKFIDATVPQLESLGLT 233 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 6766 4433 666777777665543
No 98
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=26.27 E-value=5.5e+02 Score=24.11 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=61.3
Q ss_pred HhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCchh--hHhhhhhhhhhhHH-HHHHHHhHHh
Q 016230 165 WTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYL--GFIYTSFQERATFI-SHGNTARHAK 241 (393)
Q Consensus 165 Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p~~--~~vYtsfQE~AT~i-sh~ntarla~ 241 (393)
+...=.-|...|..+|..=+|--|.-=|+.+ +.....-++.+.+- .++|+. +++-..+-=--++| -|..+-.+
T Consensus 54 iae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~-~~l~dISgC~~a~L-Pedp~D~~~~l~vlv~AE~CAir~ykeic~~-- 129 (172)
T COG2406 54 IAEEAREEDRKHFELIAPRIYELGGDLPRDM-KKLHDISGCKPAYL-PEDPYDIDEILAVLVKAERCAIRAYKEICNL-- 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchhH-HHHHhhcCCCCCCC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 3333334556799999988876554333333 33344445544443 346764 44444332222222 23333332
Q ss_pred Hh-CCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 242 EY-GDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 242 ~~-gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
.+ .||.--.+...|-.||.+|...|.+++.+
T Consensus 130 T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~~ 161 (172)
T COG2406 130 TAGKDPRTYELAEAILREEIEHRTWFLELLGK 161 (172)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23 39999999999999999999999988643
No 99
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.28 E-value=1e+02 Score=25.26 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHHHHhch
Q 016230 330 ILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGR 374 (393)
Q Consensus 330 Il~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 374 (393)
++-|-..+|+... |||++ -++-|..|..+++|++||.+.=
T Consensus 22 l~lHY~~k~~~~~--~ls~~---d~~~L~~L~~~a~rm~eRI~tL 61 (75)
T TIGR02976 22 LILHYRSKRKTAA--SLSTD---DQALLQELYAKADRLEERIDTL 61 (75)
T ss_pred HHHHHHhhhccCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888874 78765 3446777888999999998754
No 100
>PF13668 Ferritin_2: Ferritin-like domain
Probab=24.82 E-value=2.1e+02 Score=24.45 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=26.7
Q ss_pred hCCHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 016230 243 YGDLKLAQICGIIASDEKRHETAYTKIVE 271 (393)
Q Consensus 243 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 271 (393)
..++...+++..|+.+|..|..+.++.++
T Consensus 35 ~~~~~~~~~~~~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 35 ALDPEVRDLFQEIADQEQGHVDFLQAALE 63 (137)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999986
No 101
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=24.78 E-value=56 Score=32.33 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=17.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHH
Q 016230 253 GIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 253 ~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
-++|.||.||+..+.+-++++
T Consensus 105 ~~va~dEarHf~ll~~rL~~l 125 (253)
T PF04305_consen 105 LRVADDEARHFRLLRERLEEL 125 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999988664
No 102
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.19 E-value=3.1e+02 Score=32.98 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=69.1
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHH-HHHhccCCCcccCCCCCccchhhHHHHHHHHhcCCC
Q 016230 245 DLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALAD-MMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYT 323 (393)
Q Consensus 245 dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~-mm~~~i~MP~~~m~dg~~~~lf~~~savaqr~GvYt 323 (393)
+.++..+|..|+.-=.--.++=-.+++.+....|...+...-. +|. . -.+...+.-+|=
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~----------------s----ll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP----------------S----LLALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH----------------H----HHHHHHhhhHHH
Confidence 3456777777776443334455566666666667665554432 222 1 122445555566
Q ss_pred hhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHHHHhch
Q 016230 324 AKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGR 374 (393)
Q Consensus 324 ~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 374 (393)
...-..+++.|+++.+++++.++-+ +..+++=.+|||..+|....
T Consensus 886 r~Kvr~LlekLirkfg~~eLe~~~p------ee~~klL~nIRK~r~R~~rK 930 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEELESFLP------EEDMKLLTNIRKRRRRKKRK 930 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHHHHhhCH------HHHHHHHHHHHHHHHHhhhh
Confidence 6666779999999999999999977 67778888999998776543
No 103
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=23.83 E-value=1.4e+02 Score=29.24 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 016230 245 DLKLAQICGIIASDEKRHETAYTKIVEKLF 274 (393)
Q Consensus 245 dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 274 (393)
+....+-+.....||.+|..+|.++++++-
T Consensus 111 ~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 111 DDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777788999999999999999887
No 104
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=23.56 E-value=1.7e+02 Score=23.88 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 016230 259 EKRHETAYTKIVEKLFEIDPDGTVMALADMMK 290 (393)
Q Consensus 259 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 290 (393)
|.+|..+|.++++.+.-..|+.+...|..++.
T Consensus 9 e~~~~~~f~~~~~~l~~~~~~~~~~~f~~v~~ 40 (101)
T PF00452_consen 9 ERKYEDFFENMLNQLNINTPDNAYETFNEVAE 40 (101)
T ss_dssp HHHHHHHHHHHHHHHCSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 55667777777776655566556666666665
No 105
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=22.94 E-value=1.5e+02 Score=28.70 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 225 QERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 225 QE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
.|.+|---|-...=-.+.........++..|+.+|.+|+..-.|++.++
T Consensus 7 lE~atip~YL~a~ySi~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~al 55 (227)
T PF12902_consen 7 LELATIPPYLTALYSIKPGTNEEARNLIRSVAIEEMLHLSLAANLLNAL 55 (227)
T ss_dssp HHHHHHHHHHHHHHHBS-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566655555333222222244488999999999999999999999875
No 106
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=22.72 E-value=1.9e+02 Score=26.20 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 016230 226 ERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEK 272 (393)
Q Consensus 226 E~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 272 (393)
|.=---+|+.+..+|+..|++-.+++|...-.+|...-...+.+.+.
T Consensus 106 ehyeIA~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L~~~a~~ 152 (159)
T PF05974_consen 106 EHYEIAAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKLTQLAES 152 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334569999999999999999999999999999999888887764
No 107
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=22.08 E-value=1.7e+02 Score=30.09 Aligned_cols=38 Identities=29% Similarity=0.198 Sum_probs=32.9
Q ss_pred HhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016230 242 EYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG 280 (393)
Q Consensus 242 ~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 280 (393)
....|-++..++..+..|+.|-.+|..+++.+. .+++.
T Consensus 124 ~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e 161 (369)
T PRK07209 124 HITNPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGE 161 (369)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Confidence 456899999999999999999999999999884 45554
No 108
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=22.04 E-value=2.9e+02 Score=26.18 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhHHhHhCCHHHHHHHHHhhh----------------hhh--HHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 016230 228 ATFISHGNTARHAKEYGDLKLAQICGIIAS----------------DEK--RHETAYTKIVEKLFEIDPDGTVMALADMM 289 (393)
Q Consensus 228 AT~ish~ntarla~~~gdPvLa~I~~~IAa----------------DE~--RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 289 (393)
+-.-||..+.+ .+|.|.|..++..+.. .+. .-.....+|++++-..|++.+..++...+
T Consensus 141 ~d~~FH~~i~~---~s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~~~~~H~ 217 (253)
T PRK10421 141 ADVRFHLAIAE---ASHNVVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSQLTEQHQAVMDAILAGDAEGARKAMMAHL 217 (253)
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678987766 4889998887766531 111 11345777888888888888777766665
Q ss_pred H
Q 016230 290 K 290 (393)
Q Consensus 290 ~ 290 (393)
.
T Consensus 218 ~ 218 (253)
T PRK10421 218 S 218 (253)
T ss_pred H
Confidence 4
No 109
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=20.25 E-value=2.2e+02 Score=23.52 Aligned_cols=47 Identities=28% Similarity=0.213 Sum_probs=35.7
Q ss_pred hhhHhhhhhhhhhhHHHHHHHHhHH---hHhCCHHHHHHHHHhhhhhhHH
Q 016230 216 YLGFIYTSFQERATFISHGNTARHA---KEYGDLKLAQICGIIASDEKRH 262 (393)
Q Consensus 216 ~~~~vYtsfQE~AT~ish~ntarla---~~~gdPvLa~I~~~IAaDE~RH 262 (393)
..|.+|.+|.=+--+-+|..+.+.. |+..|..++.=..+-|.||+|-
T Consensus 21 ~lGvaYGa~r~~~l~~~~e~~Rei~a~eKav~da~~a~ekKr~a~~eaR~ 70 (81)
T KOG4326|consen 21 SLGVAYGAFRLRQLREYHEDIREIDAHEKAVADAEEAAEKKRWAKDEARY 70 (81)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Confidence 4689999998888888887776654 3455777777778888898873
No 110
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.16 E-value=87 Score=29.27 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=36.5
Q ss_pred hhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016230 217 LGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG 280 (393)
Q Consensus 217 ~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 280 (393)
.+++|.-=.|+-.+.-|--+ +..- =-.|..+||+-|-+|+.+-.-++++|--.||+.
T Consensus 52 nsLiyMrEEEKLARDVYL~L------Ynkw-~l~IF~nIA~SEQ~HmDAVk~LlekYnv~dP~~ 108 (189)
T COG4902 52 NSLIYMREEEKLARDVYLYL------YNKW-NLPIFRNIAASEQEHMDAVKSLLEKYNVQDPAS 108 (189)
T ss_pred hhHHHHHHHHHHHhhHHhhh------hhcc-CcHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCc
Confidence 35666655555444444322 2111 136889999999999988887777776666643
No 111
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=20.13 E-value=1.6e+02 Score=29.44 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=29.2
Q ss_pred HhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 016230 242 EYGDLKLAQICGIIASDEKRHETAYTKIVEKL 273 (393)
Q Consensus 242 ~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 273 (393)
...+|-.+..++.++..|+.|..+|..+++.+
T Consensus 84 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl 115 (324)
T PRK09614 84 DITTPEEEAVLANIAFMEAVHAKSYSYIFSTL 115 (324)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999975
Done!