BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016231
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5AHI7|NOP12_CANAL Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=NOP12 PE=3 SV=1
Length = 454
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 17/170 (10%)
Query: 226 RTIFVGNLPLKVKKKTLIKE-----FIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
RT+FVGN+P V +I + F +G+IDS+R RS+ D +PRK A +K +++
Sbjct: 159 RTVFVGNVPADVITSKIIAKNFKNLFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHK 217
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
+ DSV+AYIV+K + ++ AA N V +H+R+D P AP D K+T+F
Sbjct: 218 SRDSVNAYIVYKEKPASIAAKELNATVFEDHHLRVDHVSHP--------AP-KDNKRTIF 268
Query: 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
VGNL F+ K+E +++ F L+ VE+VR+IR +GKG A V FK
Sbjct: 269 VGNLDFEEKEETLWKYFNS--KLDQDVESVRIIRDSKTNLGKGFALVQFK 316
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 23/172 (13%)
Query: 226 RTIFVGNLPLKV-----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
+T+FV NLP +V K L K F +FG +DS+R RS+ + IPRK A +K+ +
Sbjct: 164 KTVFVNNLPARVVTNKGDYKDLTKHFRQFGAVDSIRFRSLAFSEA-IPRKVAFFEKKFHS 222
Query: 281 NADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF 340
D+V+AYIVF+ S +AL+ N + H+R+D P + D K+ VF
Sbjct: 223 ERDTVNAYIVFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQ---------DTKRCVF 273
Query: 341 VGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
VGNL F+ ++E +++ F CG S++ VR++R P +GKG AY+ FK
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCG------SIDYVRIVRDPKTNLGKGFAYIQFK 319
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 19/167 (11%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K A ++++ + + S+
Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSI 248
Query: 286 HAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL 344
+AY+VFK E + AL N A I G IR+D L E A K++VFVGNL
Sbjct: 249 NAYVVFKDESAAAKALQRNGAQIAEGFRIRVD--------LASETAS--RDKRSVFVGNL 298
Query: 345 PFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
P+ ++D + + F CG S+ AVR++R+P VG+G YVLF
Sbjct: 299 PYKIEDSALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLF 339
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 114/203 (56%), Gaps = 23/203 (11%)
Query: 194 GVGEKRKKADNETEDMLV-HRKEEGFDDEGKLL---RTIFVGNLPLKVKKKTLIKEFIKF 249
GV +K ++TED +V RK+ + E + L RT+FVGNLP+ KK L F ++
Sbjct: 149 GVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEY 208
Query: 250 GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIG 309
G+I+SVR RS+ + + +K A ++++I+ + +++AY+VFK E + AL N A I
Sbjct: 209 GQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIA 268
Query: 310 -GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESS 366
G IR+D A + K++VFVGNLP+ V++ I + F CG S
Sbjct: 269 DGFRIRVDLASETSSR----------DKRSVFVGNLPYKVEESAIEKHFLDCG------S 312
Query: 367 VEAVRVIRHPHMRVGKGIAYVLF 389
+ AVR++R +GKG YVLF
Sbjct: 313 IMAVRIVRDKMTGIGKGFGYVLF 335
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 19/167 (11%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
RT+FVGNLP+ KK L F ++G+++SVR RSV + + +K A ++++ + + S+
Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242
Query: 286 HAYIVFKSEQSTEAALAFNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL 344
+AY+VFK E++ AL N A I G IR+D L E A K++VFVGNL
Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAEGFRIRVD--------LASETA--SRDKRSVFVGNL 292
Query: 345 PFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
P+ V + + + F CG S+ AVR++R+P VG+G YVLF
Sbjct: 293 PYRVDESALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLF 333
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 19/169 (11%)
Query: 227 TIFVGNLPLKV-KKKTLIKEF----IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINEN 281
TIFVGN+ +V KT+ F G + SVR RS+ +PRK A + +Q +
Sbjct: 169 TIFVGNVSSEVITDKTVYNNFKALFAAIGTVASVRFRSISFSKL-LPRKVAFISQQFHSK 227
Query: 282 ADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFV 341
D+V+AYIVFK+ +S + AL N +V G H+R+D P D K+ VFV
Sbjct: 228 RDTVNAYIVFKNVKSVKGALTLNGSVFKGFHMRVDSVAHP---------GAQDHKRCVFV 278
Query: 342 GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
G L F+ ++E +++ F D VE VR++R P VGKG AYV FK
Sbjct: 279 GALDFEEQEESLWEAFSSCGD----VEYVRIVRDPKTNVGKGFAYVQFK 323
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 39/191 (20%)
Query: 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKF--------------------GEIDSVRIRSV 260
K RT+FVGN+P + + K + KEF + ++S+R RS+
Sbjct: 133 AKAERTVFVGNVPHEAITDKKVYKEFKQLVAQRKLSKEDEDDEEQKAEKYAVESIRFRSI 192
Query: 261 PIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACP 320
+ +PRK A +Q++++ DSV+AY+V+ +++ AA N +V +H+R D
Sbjct: 193 -AFEEALPRKVAFVQQKLHHTRDSVNAYVVYAEKEAVTAACKLNGSVFHDHHLRFDSVAH 251
Query: 321 PRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHM 378
P AP +D K++VFVGNL F+ +E +++ F CG +E VR++R P
Sbjct: 252 P--------AP-HDRKRSVFVGNLDFEESEESLWKHFMSCG------PIEYVRIVRDPKT 296
Query: 379 RVGKGIAYVLF 389
VGKG AYV F
Sbjct: 297 NVGKGFAYVQF 307
>sp|Q6BTS9|NOP12_DEBHA Nucleolar protein 12 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NOP12 PE=3
SV=2
Length = 462
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 18/171 (10%)
Query: 226 RTIFVGNLPLKV-----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE 280
RT+FVGN+ V K K F ++G+I S+R RS+ D +PRK A +K+++
Sbjct: 159 RTVFVGNVNASVVGSKPMYKKFKKLFSQYGKIQSIRFRSISFDDA-VPRKVAFAKKKLHS 217
Query: 281 NADSVHAYIVF-KSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+ D+++AY+VF + E S + N H+R+D P AP D K+T+
Sbjct: 218 SRDTLNAYVVFAEKEPSLKCVPKLNATEFEHAHLRVDHVAHP--------AP-KDNKRTI 268
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
FVGNL F+ K+E +++ F D + VE+VRVIR VGKG A V FK
Sbjct: 269 FVGNLDFEEKEETLWRYFNSKTD--NDVESVRVIRDAKTNVGKGFALVQFK 317
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 33/188 (17%)
Query: 219 DDEGKLLRTIFVGNLPLKVK-KKTLIKEFIK-FGEID-----------SVRIRSVPIIDT 265
D+ K RTIFVGNL +V K+ K F K F ID S+R RSV D
Sbjct: 105 DEIEKASRTIFVGNLSNEVIISKSTYKLFQKLFNNIDDDDENKKLPIQSIRFRSVSFEDA 164
Query: 266 KIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA--FNMAVIGGNHIRLDRACPPRK 323
+PRK A +Q++++++ SV+AYIV+K + L N V H+R+D P
Sbjct: 165 -LPRKVAFVQQKLHKSRASVNAYIVYKEQSPLLNKLIKRLNGQVFSNRHLRVDSITHP-- 221
Query: 324 KLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVG 381
AP +D +++VFVGNL F+ +E +++ F CG S+E VR++R P +G
Sbjct: 222 ------AP-HDKQRSVFVGNLDFEEDEESLWKHFGACG------SIEYVRIVRDPKTNMG 268
Query: 382 KGIAYVLF 389
KG AYV F
Sbjct: 269 KGFAYVQF 276
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 48/204 (23%)
Query: 219 DDEGKLLRTIFVGN-LPLKVKKKTLIKEFIK-FG-------------------------- 250
D+ K RT+F+GN L + K + KEF K FG
Sbjct: 141 DELEKAERTVFIGNILSTVITSKKVYKEFKKLFGTNPIAETEESGNEKEEESSKKSDNNE 200
Query: 251 -EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVI 308
I+S+R RS+ D +PRK A +Q++ +++ D+++AYIV+K++ + + N V
Sbjct: 201 FAIESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVF 259
Query: 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESS 366
+H+R+D P AP +D K+++FVGNL F+ +E +++ F CG
Sbjct: 260 QDHHLRVDSVAHP--------AP-HDKKRSIFVGNLDFEEIEESLWKHFEPCG------D 304
Query: 367 VEAVRVIRHPHMRVGKGIAYVLFK 390
+E VR+IR +GKG AYV FK
Sbjct: 305 IEYVRIIRDSKTNMGKGFAYVQFK 328
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 52/204 (25%)
Query: 222 GKLLRTIFVGNLPLKV-KKKTLIKEF-------------------------------IKF 249
K RTIF+GN+P +V K + KEF +KF
Sbjct: 160 AKAERTIFIGNVPNEVITSKKVYKEFKKLLSKDPRSENDDHDDGEEDEEEEESKTKDVKF 219
Query: 250 GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF-NMAVI 308
++S+R RS+ + +PRK A + ++++++ DS++AY V+ S + + N V
Sbjct: 220 N-VESIRFRSIAF-EEALPRKVAFVHQKLHKSRDSINAYAVYGSSNPVKIMCQYLNGKVF 277
Query: 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLF--CGLNDLESS 366
+H+R+D P +P +D +++VFVGNL F+ +E +++ F CG
Sbjct: 278 NDHHLRVDSVTHP--------SP-HDKRRSVFVGNLDFEEVEESLWKHFEPCG------D 322
Query: 367 VEAVRVIRHPHMRVGKGIAYVLFK 390
+E VR+IR +GKG AYV FK
Sbjct: 323 IEYVRIIRDSKTNMGKGFAYVQFK 346
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
R++FVGNL + +++L K F G+I+ VRI I D+K N
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRI----IRDSKT-------------NMGKG 339
Query: 286 HAYIVFKSEQSTEAALAFNMAVIG----GNHIRLDRACPPRKKLKGEDAPL 332
AY+ FK QS AL + I +R+ R C +K +G + L
Sbjct: 340 FAYVQFKDFQSVSKALLLHEKKIHEGKKARKLRISR-CKNMRKAQGNQSSL 389
>sp|Q4WCH5|NOP12_ASPFU Nucleolar protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=nop12 PE=3 SV=1
Length = 538
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 93/309 (30%)
Query: 164 TKKRKR---DDVEKDYVEKKYGVIAKEEEG---KKVGVGEKRKKADNETED--------- 208
+KKRKR +D+E+ Y+ + IAKEE+ K+ KR+K + +D
Sbjct: 113 SKKRKRAPAEDLEETYMRR----IAKEEQKEQEKRRAEKAKRQKVEEGGKDSDPVSDKSK 168
Query: 209 ------------MLVHRKE-EGFDDEGKLL----RTIFVGN-----LPLKVKKKTLIKEF 246
+ V R E + D E K L RT+F+GN + K KKTL+K
Sbjct: 169 DGRDESSEEEDEITVPRHETQSGDPESKELEKSNRTVFLGNVSSQAIKSKSAKKTLLKHL 228
Query: 247 IKF----------GEIDSVRIRSVPIIDT-KIPRKGAILQKQI-NENADSVHAYIVFKSE 294
F +++S+R RSV K+P++ A +++I ++ S +AY+V+ +
Sbjct: 229 ASFLSTLPESTGPHKVESIRFRSVAFASGGKVPKRAAFARREILDDTTPSTNAYVVYSTV 288
Query: 295 QST-EAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL--------- 344
Q+ +A A N V+ H+R+D P + D K+ VFVGNL
Sbjct: 289 QAARKAPAALNGTVVLDRHLRVDSVAHPSQ---------IDHKRCVFVGNLDFVDNETDP 339
Query: 345 -------------PFDVKDEEIYQLFC----GLNDLESS---VEAVRVIRHPHMRVGKGI 384
P DV +E +++ F G + S+ VE+VRV+R RVGKG
Sbjct: 340 EEDDKKKKKKKSGPADV-EEGLWRTFNAHTKGSKERASTRGNVESVRVVRDRTTRVGKGF 398
Query: 385 AYVLFKTRV 393
AYV F +V
Sbjct: 399 AYVQFYDQV 407
>sp|Q4IQW0|NOP12_GIBZE Nucleolar protein 12 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=NOP12 PE=3 SV=1
Length = 559
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 122/292 (41%), Gaps = 71/292 (24%)
Query: 152 SVEGKKRSENKKTKKRKRDDVEKDYVEKKYGVIAKEEEGKKVGVGEKRKKADNETE---- 207
+ E K E K+ +K DD+E Y++K +A EEE + G KR+K D T+
Sbjct: 126 ATEDKSNKERKRKRKNDNDDLEGKYLDK----VAAEEEADRAG---KRQKNDALTKTEKP 178
Query: 208 -----------DMLVHR---KEEGFDDEGKLLRTIFVGNLPL-----KVKKKTLIKEFIK 248
D+ VH K+ D K RT+F+ N+ K KKTL+
Sbjct: 179 AVDEEDAGNESDIPVHETLVKDSKASDLDKAARTVFLANVSTEAISSKSAKKTLMAHLSS 238
Query: 249 FGE--------IDSVRIRSVPIIDTKIPRKGAILQKQI-NENADSVHAYIVFKSEQSTEA 299
E I+S+R RSV +P++ A + K + + S +AY+V+ + +
Sbjct: 239 VLEKDATPPQTIESLRFRSVAFAGGSLPKRAAYITKSLMDSTTKSANAYVVYSTTAAART 298
Query: 300 ALA-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDE------- 351
A N + H+R+D P +P D ++ VFVGNL F V DE
Sbjct: 299 AATKLNGTQVLDRHLRVDSVAHP--------SPT-DHRRCVFVGNLGF-VDDETVLNTNA 348
Query: 352 --------------EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
+I + + VE VRV+R RVGKG AYV F
Sbjct: 349 EGDTTEKKKNKTPSDIEEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQF 400
>sp|Q7S2L7|NOP12_NEUCR Nucleolar protein 12 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nop-12
PE=3 SV=1
Length = 594
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 51/205 (24%)
Query: 226 RTIFVGNLPLKV-----KKKTLIKEFIKF--------GEIDSVRIRSVPIIDTKIPRKGA 272
RT+F+ N+ ++ KK L+K +++S+R RS IP++ A
Sbjct: 200 RTVFLSNVAVEAVTSRSAKKALMKHMASVLDKEAKPAQKVESIRFRSTAFATAAIPKRAA 259
Query: 273 ILQKQINE-NADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRACPPRKKLKGEDA 330
++K + E S +AY+V+ + + A + N ++ HIR+D P A
Sbjct: 260 YIKKSVMEATTKSTNAYVVYSTPAAARLACSKLNGTIVLDRHIRVDSVAHP--------A 311
Query: 331 PLYDIKKTVFVGNLPFDVKDEEIYQ--------------------------LFCGLNDLE 364
P+ D K+ VFVGNL F V DE + Q L+
Sbjct: 312 PV-DHKRCVFVGNLGF-VDDETVLQVKVDEDGKEVTEKKKRTKQPMDVEEGLWRVFGKEG 369
Query: 365 SSVEAVRVIRHPHMRVGKGIAYVLF 389
VE+VRV+R P RVGKG AYV F
Sbjct: 370 GKVESVRVVRDPVTRVGKGFAYVQF 394
>sp|Q5BDC8|NOP12_EMENI Nucleolar protein 12 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=nop12 PE=3 SV=1
Length = 520
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 156/357 (43%), Gaps = 102/357 (28%)
Query: 116 LGFEPNGTIEN-EIKKEHSSNVGSES-----YLNRQKQNSNFSVEGKKRSENKKTKKRKR 169
LG P I + E +E SS+ G++S ++ ++ + + E + ++KRKR
Sbjct: 52 LGAAPKTKITDVEKDEEESSSAGNDSASEDQFMEDAPESPDAAEEAVQAVPEPPSRKRKR 111
Query: 170 ---DDVEKDYVEKKYGVIAKEEEGKKVGVGEKRKKA---------------------DNE 205
+D+E+ Y+ + +AKEE+ + +K+++A D E
Sbjct: 112 AAGEDLEESYMRR----LAKEEQKE-----QKKRRAERSSSLEEESEDGEKESPQSEDGE 162
Query: 206 TED----MLVHRKEEGF---DDE-GKLLRTIFVGNLPLKV-----KKKTLIKEFIKF--- 249
+ED + H G DDE K RT+F+GN+ K KK L+K F
Sbjct: 163 SEDEGADIPKHEALAGAANDDDELSKSNRTVFLGNVSTKAITSKSAKKELMKHLSSFLST 222
Query: 250 -------GEIDSVRIRSVPIIDT-KIPRKGAILQKQINENAD-SVHAYIVFKSEQSTEAA 300
+IDS+R RS KIP++ A +++I+++ S +AY V+ + Q+ + A
Sbjct: 223 LPESTGPHKIDSIRFRSTAFASGGKIPKRAAFAKQEIHDDTTPSTNAYAVYSTAQAAKKA 282
Query: 301 LA-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNL--------------- 344
A N V+ H+R+D P K D K+ VFVGNL
Sbjct: 283 PAALNGTVVLDRHLRVDNVAHPAK---------VDHKRCVFVGNLDFIDNETGTEEGEKK 333
Query: 345 -----PFDVKDEEIYQLFCGLNDLESS-------VEAVRVIRHPHMRVGKGIAYVLF 389
P DV +E +++ F S VE+VRV+R RVGKG AYV F
Sbjct: 334 KKNRPPADV-EEGLWRTFNAHTKASQSGPAGRGNVESVRVVRDRSTRVGKGFAYVQF 389
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 32/173 (18%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPR-KGAILQKQINENADSV 285
T+FVG L V + L +EF ++G I R+ I+D + R KG
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARV----IMDGQSGRSKG-------------- 305
Query: 286 HAYIVFKSEQSTEAALAFN-MAVIGGNHIRLDRACP--------PRKKLKGEDAPLYDIK 336
+ Y+ F++ ++ +AA+A N I G + LD + P +++ L +
Sbjct: 306 YGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPS 365
Query: 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
TVFVGNL F+ ++++ F G D++S +R+ P KG YV F
Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQS----IRLPTDPQSGRLKGFGYVTF 414
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T++VG L KV + L + F++ G P+++T +P+ Q Q +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAG----------PVVNTHMPKDRVTGQHQ-------GY 56
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
++ F SE+ + A+ NM + G IR+++A K L D+ +F+GNL
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL--------DVGANIFIGNLD 108
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
++ ++ +Y F + ++ +++R P KG A++ F +
Sbjct: 109 PEIDEKLLYDTFSAFGVI---LQTPKIMRDPDTGNSKGYAFINFAS 151
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T++VG L KV + L + F++ G P+++T +P+ Q Q +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAG----------PVVNTHMPKDRVTGQHQ-------GY 56
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
++ F SE+ + A+ NM + G IR+++A K L D+ +F+GNL
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL--------DVGANIFIGNLD 108
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
++ ++ +Y F + ++ +++R P KG A++ F +
Sbjct: 109 PEIDEKLLYDTFSAFGVI---LQTPKIMRDPDTGNSKGYAFINFAS 151
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
T++VG L KV + L + F++ G P+++T +P+ Q Q +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAG----------PVVNTHMPKDRVTGQHQ-------GY 56
Query: 287 AYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
++ F SE+ + A+ NM + G IR+++A K L D+ +F+GNL
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL--------DVGANIFIGNLD 108
Query: 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
++ ++ +Y F + ++ +++R P KG A++ F +
Sbjct: 109 PEIDEKLLYDTFSAFGVI---LQTPKIMRDPDTGNSKGYAFINFAS 151
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 30/146 (20%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
DEGK+ F+G L KK L + +FGE+ I++ P+
Sbjct: 24 DEGKM----FIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVT---------------- 63
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L N + G I RA K LKG++ P K V
Sbjct: 64 -GRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA----KALKGKEPP-----KKV 113
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLES 365
FVG L + +E+I Q F G ++E+
Sbjct: 114 FVGGLSPETTEEQIKQYFGGFGEIEN 139
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 30/146 (20%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
D+GK+ F+G L KK L + +FGE+ I++ P+
Sbjct: 28 DDGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVT---------------- 67
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S E L + G I RA K LKG++ P K V
Sbjct: 68 -GRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 117
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLES 365
FVG L D +E+I + F ++E+
Sbjct: 118 FVGGLSPDTSEEQIKEYFGAFGEIEN 143
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 30/146 (20%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
DEGK+ F+G L KK L + +FGE+ I++ P+
Sbjct: 24 DEGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVT---------------- 63
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L + G I RA K LKG++ P K V
Sbjct: 64 -GRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 113
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLES 365
FVG L + +E+I Q F G ++E+
Sbjct: 114 FVGGLSPETTEEQIKQYFGGFGEIEN 139
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F SE+ E AL I G +++++A K E+ D +T+FV N+P+
Sbjct: 276 GYVDFSSEEEVEKALKLTGKKILGTEVKIEKAMAFDKNKTAENKKERD-SRTLFVKNIPY 334
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG--KGIAYVLF 389
EE+ ++F E + IR P + G KGIAYV F
Sbjct: 335 STTVEELQEIF----------ENAKDIRIPTGKDGSNKGIAYVEF 369
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 30/145 (20%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
D+GK+ F+G L KK L + +FGE+ I++ P+
Sbjct: 146 DDGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVT---------------- 185
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L + G I RA K LKG++ P K V
Sbjct: 186 -GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 235
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLE 364
FVG L D +E+I + F ++E
Sbjct: 236 FVGGLSPDTSEEQIKEYFGAFGEIE 260
>sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens
GN=EIF4B PE=1 SV=2
Length = 611
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH--MRVGKGIAYVLFK 390
T F+GNLP+DV +E I + F GLN + AVR+ R P R+ KG Y F+
Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGLN-----ISAVRLPREPSNPERL-KGFGYAEFE 145
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 30/146 (20%)
Query: 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQIN 279
D+GK+ F+G L KK L + +FGE+ I++ P+
Sbjct: 27 DDGKM----FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVT---------------- 66
Query: 280 ENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTV 339
+++FK S + L + G I RA K LKG++ P K V
Sbjct: 67 -GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKV 116
Query: 340 FVGNLPFDVKDEEIYQLFCGLNDLES 365
FVG L D +E+I + F ++E+
Sbjct: 117 FVGGLSPDTSEEQIKEYFGAFGEIEN 142
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 37/173 (21%)
Query: 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQI 278
+D GK+ FVG L KK L F KFGE+ I+ P
Sbjct: 72 EDAGKM----FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP----------------- 110
Query: 279 NENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLD-RACPPRKKLKGEDAPLYDIKK 337
N +I+FK S E V+ RLD R P+K + + P+ K
Sbjct: 111 NTGRSRGFGFILFKDSSSVE-------KVLDQKEHRLDGRVIDPKKAMAMKKDPV----K 159
Query: 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
+FVG L + +E+I + F + +EA+ + P + +G ++ FK
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGE----IEAIELPIDPKLNKRRGFVFITFK 208
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 26/137 (18%)
Query: 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287
+F+G L KK L + +FGE+ I++ P+
Sbjct: 53 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVT-----------------GRSRGFG 95
Query: 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD 347
+++FK S + L + G I RA K LKG++ P K VFVG L D
Sbjct: 96 FVLFKDAASVDKVLELKEHKLDGKLIDPKRA----KALKGKEPP-----KKVFVGGLSPD 146
Query: 348 VKDEEIYQLFCGLNDLE 364
+E+I + F ++E
Sbjct: 147 TSEEQIKEYFGAFGEIE 163
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
RTIF+G LP + + L K F+KFGEI+ +RI K I QK
Sbjct: 107 RTIFIGRLPYDLDEIELQKYFVKFGEIEKIRI-----------VKDKITQKSKG------ 149
Query: 286 HAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRAC 319
+A+IVFK S++ A + V G I+ DR C
Sbjct: 150 YAFIVFKDPISSKMAFK-EIGVHRGIQIK-DRIC 181
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
D +T+F+G LP+D+ + E+ + F + +E +R+++ + KG A+++FK
Sbjct: 104 DPYRTIFIGRLPYDLDEIELQKYFVKFGE----IEKIRIVKDKITQKSKGYAFIVFK 156
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 228 IFVGNLPLKVKKKTLIKEFI---KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADS 284
+++GNL K L++ FI K E + R+ I +PR A K N +
Sbjct: 127 VWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAA---KNSNAMKNK 183
Query: 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLD-----RACPPRKKL--KGEDAPLYDIKK 337
Y+ FK+ + +A L + + + G ++ + P + L ++ P +
Sbjct: 184 GFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPP----SR 239
Query: 338 TVFVGNLPFDVKDEEIYQLF--CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
+FVGNL FDV D+ + + F CG + +R+ KG A++ FK
Sbjct: 240 ILFVGNLSFDVTDDLLRKHFQHCG------DIVKIRMATFEDSGKCKGFAFIDFK 288
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 24/101 (23%)
Query: 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286
TIFVG L V ++ L++ F FGE+ SV+I P+ KG
Sbjct: 328 TIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PV------GKGC-------------- 364
Query: 287 AYIVFKSEQSTEAALA-FNMAVIGGNHIRLDRACPPRKKLK 326
++ F + QS E A+ N VIG N +RL P K+ +
Sbjct: 365 GFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWR 405
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 27/143 (18%)
Query: 224 LLRT-IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENA 282
L+R+ +F+G L KK L + +FGE+ I++ P+
Sbjct: 31 LIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVT-----------------GR 73
Query: 283 DSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVG 342
+++FK S + L + G I RA K L+G++ P K VFVG
Sbjct: 74 SRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA----KALQGKEPP-----KKVFVG 124
Query: 343 NLPFDVKDEEIYQLFCGLNDLES 365
L + +E+I Q F G ++E+
Sbjct: 125 GLSPETTEEQIKQYFGGFGEIEN 147
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 38/174 (21%)
Query: 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQI 278
+D GK+ FVG L KK L F KFGE+ I+ P
Sbjct: 66 EDAGKM----FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP----------------- 104
Query: 279 NENADSVHAYIVFKSEQSTEAALAFNMAVIGGNHIRLD-RACPPRKKLKGEDAPLYDIKK 337
N +I+FK S E V+ RLD R P+K + + P+ K
Sbjct: 105 NTGRSRGFGFILFKDAASVE-------KVLDQKEHRLDGRVIDPKKAMAMKKDPV----K 153
Query: 338 TVFVGNL-PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390
+FVG L P +E+I + F + +EA+ + P + +G ++ FK
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGE----IEAIELPMDPKLNKRRGFVFITFK 203
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F+S + E AL + GN I+L+ K KG D+ +T+ NL F
Sbjct: 354 GYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGRDSKKVRAARTLLAKNLSF 406
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
++ ++E+ ++F E +VE +R++ KGIAY+ FK+
Sbjct: 407 NITEDELKEVF------EDAVE-IRLVSQDGRS--KGIAYIEFKS 442
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 30/199 (15%)
Query: 198 KRKKADNETEDMLVHRKEEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257
KRK D E E+ ++ ++E + TIFVG L + + L KEF G + R+
Sbjct: 140 KRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARV 199
Query: 258 RSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMAVIGGNHIRLD 316
I +G + + Y+ F+++ E A+ I G I D
Sbjct: 200 ---------IYERGTDRSRG--------YGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 242
Query: 317 RACP------PRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV 370
+ R K G D P + T+F+GNL F+ + I++LF V +V
Sbjct: 243 MSTSKPAGNNDRAKKFG-DTP-SEPSDTLFLGNLSFNADRDAIFELFA----KHGEVVSV 296
Query: 371 RVIRHPHMRVGKGIAYVLF 389
R+ HP KG YV F
Sbjct: 297 RIPTHPETEQPKGFGYVQF 315
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287
+FVGNL V + L F + G ++ + I ++ +++
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEV---------------IYNRETDQSRG--FG 194
Query: 288 YIVFKSEQSTEAALA-FNMAVIGGNHIRLDRACPPRKKLKGEDAP-LYDIKKTVFVGNLP 345
++ S E A+ FN + G + +++A P + + E AP +Y+ V+VGNLP
Sbjct: 195 FVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP--RGSRPERAPRVYEPAFRVYVGNLP 252
Query: 346 FDVKDEEIYQLFC 358
+DV + + QLF
Sbjct: 253 WDVDNGRLEQLFS 265
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F+S + E AL + GN I+L+ K KG+D+ +T+ NLP+
Sbjct: 352 GYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGKDSKKERDARTLLAKNLPY 404
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
V +E+ ++F E + E +R++ KGIAY+ FKT
Sbjct: 405 KVTQDELKEVF------EDAAE-IRLVSKDGKS--KGIAYIEFKT 440
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F+S + E AL + GN I+L+ K KG+D+ +T+ NLP+
Sbjct: 350 GYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGKDSKKERDARTLLAKNLPY 402
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
V +E+ ++F E + E +R++ KGIAY+ FKT
Sbjct: 403 KVTQDELKEVF------EDAAE-IRLVSKDGKS--KGIAYIEFKT 438
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F+S + E AL + GN I+L+ K KG+D+ +T+ NLP+
Sbjct: 351 GYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGKDSKKERDARTLLAKNLPY 403
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
V +E+ ++F E + E +R++ KGIAY+ FKT
Sbjct: 404 KVTQDELKEVF------EDAAE-IRLVSKDGKS--KGIAYIEFKT 439
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F+S + E AL + GN I+L+ K KG D+ +T+ NL F
Sbjct: 352 GYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGRDSKKVRAARTLLAKNLSF 404
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
++ ++E+ ++F E ++E +R++ KGIAY+ FK+
Sbjct: 405 NITEDELKEVF------EDAME-IRLVSQDGKS--KGIAYIEFKS 440
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F+S + E AL + GN I+L+ K KG D+ +T+ NL F
Sbjct: 351 GYVDFESAEDLEKALELTGLKVFGNEIKLE-------KPKGRDSKKVRAARTLLAKNLSF 403
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
++ ++E+ ++F E ++E +R++ KGIAY+ FK+
Sbjct: 404 NITEDELKEVF------EDALE-IRLVSQDGKS--KGIAYIEFKS 439
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392
K TV+V N+PF + + ++++L V V +++ H R+ KG+A+VLF R
Sbjct: 9 KSTVYVSNIPFSLTNSDMHKLCSKYG----KVVKVTIVKDKHTRMSKGVAFVLFLDR 61
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392
KTVF+ NL FD ++E + ++ DL+ VRV+ HP KG A+ F T+
Sbjct: 325 KTVFIRNLSFDSEEEALGEVLQQFGDLKY----VRVVLHPDTEHSKGCAFAQFMTQ 376
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILF 58
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRRSKGVAFILF 58
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILF 58
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPF 346
Y+ F S + + AL N + G I+L++A ++ LK E+ D + T+FV NLP+
Sbjct: 324 GYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKS-KESLK-ENKKERDAR-TLFVKNLPY 380
Query: 347 DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391
V ++E+ +F E+++E VR++ + KG+AY+ FKT
Sbjct: 381 RVTEDEMKNVF------ENALE-VRLVLNKEGS-SKGMAYIEFKT 417
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 31/138 (22%)
Query: 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV 285
R +FVG L + +K L F K+GEI+S+ +++ P + R
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDP----QTGRSRGF------------ 99
Query: 286 HAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLP 345
A+IVF + ++ + A + +I N ++D P + K + +FVG L
Sbjct: 100 -AFIVFTNTEAIDKVSAADEHII--NSKKVD---PKKAKAR---------HGKIFVGGLT 144
Query: 346 FDVKDEEIYQLFCGLNDL 363
++ DEEI F ++
Sbjct: 145 TEISDEEIKTYFGQFGNI 162
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389
K TV+V NLPF + + ++Y++F V V +++ R KG+A++LF
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILF 58
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 26/138 (18%)
Query: 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287
+F+G L KK L F KFGE+ ++ PI
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT-----------------GRSRGFG 141
Query: 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD 347
+++FK +S + + + G I P R K P+ K +FVG L D
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVID-----PKRAKAMKTKEPV----KKIFVGGLSPD 192
Query: 348 VKDEEIYQLFCGLNDLES 365
+E+I + F G ++ES
Sbjct: 193 TPEEKIREYFGGFGEVES 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,126,173
Number of Sequences: 539616
Number of extensions: 6351192
Number of successful extensions: 28759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 770
Number of HSP's that attempted gapping in prelim test: 25284
Number of HSP's gapped (non-prelim): 2871
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)