Query 016231
Match_columns 393
No_of_seqs 307 out of 2164
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 6.3E-26 1.4E-30 227.0 17.1 139 224-392 106-245 (346)
2 TIGR01645 half-pint poly-U bin 99.9 7.5E-25 1.6E-29 231.3 17.1 148 224-392 106-256 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.2E-24 2.7E-29 216.1 17.7 138 225-392 3-141 (352)
4 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-24 4.6E-29 222.2 18.2 152 220-392 84-238 (457)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.5E-22 3.2E-27 201.2 18.8 147 225-392 89-321 (352)
6 TIGR01628 PABP-1234 polyadenyl 99.9 9.2E-23 2E-27 215.8 16.7 137 227-392 2-139 (562)
7 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.3E-22 7.3E-27 208.3 16.9 145 220-391 170-346 (509)
8 KOG0148 Apoptosis-promoting RN 99.9 6.2E-21 1.3E-25 180.2 13.6 141 225-392 62-210 (321)
9 KOG0127 Nucleolar protein fibr 99.9 5.6E-21 1.2E-25 194.2 14.2 146 225-392 117-344 (678)
10 TIGR01628 PABP-1234 polyadenyl 99.9 1E-20 2.2E-25 200.2 16.7 146 224-392 177-336 (562)
11 KOG0117 Heterogeneous nuclear 99.8 1.6E-20 3.4E-25 187.3 14.4 134 223-391 81-217 (506)
12 TIGR01648 hnRNP-R-Q heterogene 99.8 1.4E-20 3.1E-25 198.4 14.4 134 224-392 57-192 (578)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 5.1E-20 1.1E-24 192.0 17.3 138 224-392 1-144 (481)
14 KOG0144 RNA-binding protein CU 99.8 9.5E-21 2.1E-25 188.2 10.7 145 218-392 27-175 (510)
15 KOG0131 Splicing factor 3b, su 99.8 1.9E-20 4.2E-25 168.2 10.2 140 223-391 7-148 (203)
16 KOG0127 Nucleolar protein fibr 99.8 3.9E-20 8.4E-25 188.1 12.8 145 226-392 6-168 (678)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 2.5E-19 5.4E-24 186.9 17.8 142 223-392 273-446 (481)
18 KOG0124 Polypyrimidine tract-b 99.8 3.8E-20 8.3E-25 180.7 7.7 146 225-391 113-261 (544)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.8 7.8E-19 1.7E-23 183.1 17.6 148 224-392 294-474 (509)
20 KOG0145 RNA-binding protein EL 99.8 3.1E-19 6.8E-24 168.0 11.1 139 225-393 41-180 (360)
21 KOG0110 RNA-binding protein (R 99.8 1E-18 2.3E-23 182.4 11.5 147 228-392 518-665 (725)
22 KOG4205 RNA-binding protein mu 99.7 1.4E-17 3.1E-22 163.7 10.8 145 224-392 5-149 (311)
23 KOG0123 Polyadenylate-binding 99.7 3.1E-17 6.7E-22 165.6 13.0 123 226-392 2-125 (369)
24 TIGR01648 hnRNP-R-Q heterogene 99.7 9.7E-17 2.1E-21 169.5 15.5 138 225-392 138-279 (578)
25 TIGR01622 SF-CC1 splicing fact 99.7 4E-16 8.7E-21 160.8 18.0 143 225-392 186-420 (457)
26 KOG0145 RNA-binding protein EL 99.7 1.2E-16 2.7E-21 150.6 12.0 146 225-391 127-329 (360)
27 KOG0109 RNA-binding protein LA 99.7 8.7E-17 1.9E-21 153.6 9.7 116 227-390 4-120 (346)
28 KOG0147 Transcriptional coacti 99.7 1.3E-17 2.8E-22 170.4 3.5 152 220-392 174-330 (549)
29 KOG0117 Heterogeneous nuclear 99.7 4.5E-16 9.8E-21 155.7 12.2 138 223-392 162-303 (506)
30 KOG0123 Polyadenylate-binding 99.7 5.4E-16 1.2E-20 156.6 12.5 138 228-391 79-217 (369)
31 KOG0105 Alternative splicing f 99.6 9.3E-15 2E-19 132.1 12.8 138 223-391 4-159 (241)
32 PLN03134 glycine-rich RNA-bind 99.6 1.6E-14 3.4E-19 128.0 11.9 82 223-321 32-114 (144)
33 KOG4206 Spliceosomal protein s 99.5 6.1E-14 1.3E-18 130.3 12.6 140 224-392 8-193 (221)
34 COG0724 RNA-binding proteins ( 99.5 1.5E-13 3.3E-18 127.0 14.2 141 225-386 115-271 (306)
35 PF00076 RRM_1: RNA recognitio 99.5 2.2E-13 4.8E-18 103.4 9.5 69 228-314 1-70 (70)
36 KOG0129 Predicted RNA-binding 99.5 3.5E-13 7.6E-18 137.4 13.8 153 222-391 256-422 (520)
37 KOG0148 Apoptosis-promoting RN 99.5 7.9E-14 1.7E-18 132.4 8.2 110 224-392 5-114 (321)
38 KOG4211 Splicing factor hnRNP- 99.5 9.2E-13 2E-17 133.7 14.8 143 225-392 10-155 (510)
39 PLN03120 nucleic acid binding 99.5 2.7E-13 5.9E-18 129.8 10.0 76 225-320 4-79 (260)
40 KOG0144 RNA-binding protein CU 99.4 2.4E-13 5.1E-18 135.9 8.2 76 225-318 124-203 (510)
41 KOG0146 RNA-binding protein ET 99.4 7.9E-13 1.7E-17 125.4 11.2 77 224-318 18-98 (371)
42 KOG0121 Nuclear cap-binding pr 99.4 2.7E-13 5.9E-18 116.1 7.0 80 223-319 34-114 (153)
43 PF14259 RRM_6: RNA recognitio 99.4 3.4E-12 7.3E-17 97.9 9.4 69 228-314 1-70 (70)
44 PLN03121 nucleic acid binding 99.3 6.2E-12 1.3E-16 119.0 10.1 76 225-320 5-80 (243)
45 KOG4212 RNA-binding protein hn 99.3 1.7E-11 3.6E-16 122.9 12.9 146 225-393 44-267 (608)
46 KOG0107 Alternative splicing f 99.3 4.6E-12 9.9E-17 113.8 7.2 76 225-322 10-86 (195)
47 KOG0149 Predicted RNA-binding 99.3 5.2E-12 1.1E-16 118.1 7.2 78 225-319 12-89 (247)
48 TIGR01645 half-pint poly-U bin 99.3 1.3E-11 2.8E-16 131.3 10.9 80 224-320 203-283 (612)
49 PLN03213 repressor of silencin 99.3 1.5E-11 3.3E-16 124.7 9.3 75 225-320 10-87 (759)
50 KOG1457 RNA binding protein (c 99.3 7.3E-11 1.6E-15 109.7 13.0 148 220-391 29-257 (284)
51 smart00362 RRM_2 RNA recogniti 99.2 4.7E-11 1E-15 89.1 9.0 71 227-316 1-72 (72)
52 KOG0113 U1 small nuclear ribon 99.2 2.3E-11 5.1E-16 117.0 9.1 79 224-319 100-179 (335)
53 KOG0126 Predicted RNA-binding 99.2 1.6E-12 3.6E-17 117.3 0.8 81 223-320 33-114 (219)
54 TIGR01659 sex-lethal sex-letha 99.2 4.2E-11 9.2E-16 120.3 11.0 80 225-321 193-275 (346)
55 KOG0106 Alternative splicing f 99.2 2.5E-11 5.5E-16 113.6 6.6 130 226-392 2-143 (216)
56 KOG4207 Predicted splicing fac 99.2 3.5E-11 7.5E-16 110.7 5.7 78 225-319 13-91 (256)
57 KOG0122 Translation initiation 99.1 1.4E-10 3.1E-15 109.0 9.3 81 224-321 188-269 (270)
58 cd00590 RRM RRM (RNA recogniti 99.1 3.4E-10 7.4E-15 84.8 9.7 73 227-317 1-74 (74)
59 KOG0125 Ataxin 2-binding prote 99.1 6.8E-11 1.5E-15 115.1 7.2 78 225-321 96-174 (376)
60 KOG0114 Predicted RNA-binding 99.1 3.2E-10 6.8E-15 94.2 8.6 77 225-321 18-95 (124)
61 smart00360 RRM RNA recognition 99.1 3.8E-10 8.2E-15 83.7 8.2 70 230-316 1-71 (71)
62 PLN03134 glycine-rich RNA-bind 99.1 2.2E-10 4.7E-15 101.6 6.9 56 333-392 31-86 (144)
63 KOG0110 RNA-binding protein (R 99.1 4.8E-10 1E-14 118.2 9.6 146 220-392 380-570 (725)
64 KOG0111 Cyclophilin-type pepti 99.1 1.5E-10 3.2E-15 107.5 4.9 83 224-323 9-92 (298)
65 KOG0147 Transcriptional coacti 99.0 1.7E-09 3.6E-14 111.5 10.6 76 226-318 279-355 (549)
66 KOG0108 mRNA cleavage and poly 99.0 8.8E-10 1.9E-14 113.2 7.9 78 226-320 19-97 (435)
67 KOG0149 Predicted RNA-binding 98.9 9.7E-10 2.1E-14 103.0 5.8 53 336-392 12-64 (247)
68 KOG0130 RNA-binding protein RB 98.9 1.9E-09 4E-14 93.5 6.1 78 225-319 72-150 (170)
69 PF00076 RRM_1: RNA recognitio 98.9 2E-09 4.4E-14 81.4 5.0 49 339-392 1-49 (70)
70 KOG4454 RNA binding protein (R 98.9 3.4E-10 7.4E-15 105.1 0.7 123 225-389 9-132 (267)
71 KOG4210 Nuclear localization s 98.9 1.1E-09 2.4E-14 107.4 3.9 148 223-391 86-236 (285)
72 KOG1548 Transcription elongati 98.9 3.9E-08 8.5E-13 96.7 14.3 156 219-392 128-324 (382)
73 KOG1190 Polypyrimidine tract-b 98.9 3.9E-08 8.5E-13 98.4 13.8 137 225-391 297-461 (492)
74 PF14259 RRM_6: RNA recognitio 98.8 4.2E-09 9.1E-14 80.6 5.2 49 339-392 1-49 (70)
75 PF13893 RRM_5: RNA recognitio 98.8 1.3E-08 2.8E-13 75.1 7.5 55 242-318 1-56 (56)
76 KOG0126 Predicted RNA-binding 98.8 1.6E-09 3.4E-14 98.2 1.8 56 333-392 32-87 (219)
77 smart00361 RRM_1 RNA recogniti 98.8 2.6E-08 5.6E-13 77.2 8.1 62 239-315 2-69 (70)
78 KOG0128 RNA-binding protein SA 98.8 4.8E-10 1E-14 120.1 -3.2 125 221-392 663-787 (881)
79 KOG0132 RNA polymerase II C-te 98.7 2E-08 4.4E-13 106.8 8.4 111 222-359 418-529 (894)
80 KOG0120 Splicing factor U2AF, 98.7 2E-08 4.3E-13 104.3 7.8 147 219-392 169-341 (500)
81 KOG0122 Translation initiation 98.7 1.5E-08 3.2E-13 95.6 5.8 56 333-392 186-241 (270)
82 KOG1365 RNA-binding protein Fu 98.7 1.4E-08 3E-13 100.8 5.9 146 225-392 161-334 (508)
83 KOG0113 U1 small nuclear ribon 98.7 1.6E-08 3.6E-13 97.6 5.7 56 333-392 98-153 (335)
84 KOG0153 Predicted RNA-binding 98.7 5.2E-08 1.1E-12 95.9 8.5 78 221-321 224-303 (377)
85 KOG0415 Predicted peptidyl pro 98.7 2.9E-08 6.3E-13 97.8 6.3 82 222-320 236-318 (479)
86 COG0724 RNA-binding proteins ( 98.6 5.8E-08 1.3E-12 89.6 6.3 53 336-392 115-167 (306)
87 KOG4211 Splicing factor hnRNP- 98.6 3.1E-07 6.7E-12 94.0 12.0 144 224-391 102-330 (510)
88 smart00362 RRM_2 RNA recogniti 98.6 8.8E-08 1.9E-12 71.2 6.1 49 338-392 1-49 (72)
89 KOG0131 Splicing factor 3b, su 98.6 7.2E-08 1.6E-12 87.5 5.1 81 225-322 96-178 (203)
90 KOG0121 Nuclear cap-binding pr 98.5 1E-07 2.2E-12 82.2 4.8 53 336-392 36-88 (153)
91 smart00360 RRM RNA recognition 98.5 2.2E-07 4.7E-12 68.6 5.7 48 341-392 1-48 (71)
92 KOG0109 RNA-binding protein LA 98.5 1.2E-07 2.6E-12 91.5 5.3 75 222-321 75-150 (346)
93 KOG0112 Large RNA-binding prot 98.5 6.8E-08 1.5E-12 104.3 3.9 135 219-392 366-501 (975)
94 KOG0151 Predicted splicing reg 98.5 2.7E-07 5.8E-12 97.7 7.5 90 216-319 165-255 (877)
95 KOG4208 Nucleolar RNA-binding 98.5 4.6E-07 1E-11 83.8 8.0 80 225-321 49-130 (214)
96 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.9E-07 8.5E-12 94.4 7.1 81 223-320 403-484 (940)
97 KOG4205 RNA-binding protein mu 98.4 4.3E-07 9.3E-12 90.0 6.5 115 225-360 97-211 (311)
98 KOG0120 Splicing factor U2AF, 98.4 8.2E-07 1.8E-11 92.4 8.9 146 225-391 289-463 (500)
99 cd00590 RRM RRM (RNA recogniti 98.4 8.3E-07 1.8E-11 66.2 6.1 50 338-392 1-50 (74)
100 KOG0125 Ataxin 2-binding prote 98.4 4.3E-07 9.3E-12 88.9 5.6 54 333-392 93-146 (376)
101 KOG0124 Polypyrimidine tract-b 98.4 7.7E-07 1.7E-11 88.2 7.0 80 223-319 208-288 (544)
102 KOG4207 Predicted splicing fac 98.3 5.9E-07 1.3E-11 83.2 5.3 58 331-392 8-65 (256)
103 KOG4209 Splicing factor RNPS1, 98.3 1.1E-06 2.3E-11 84.0 6.1 78 225-319 101-178 (231)
104 KOG0114 Predicted RNA-binding 98.3 1.3E-06 2.8E-11 72.9 5.4 52 333-391 15-66 (124)
105 KOG0108 mRNA cleavage and poly 98.3 8.9E-07 1.9E-11 91.3 5.2 52 337-392 19-70 (435)
106 KOG4212 RNA-binding protein hn 98.2 1.7E-06 3.7E-11 87.5 6.7 74 222-317 533-607 (608)
107 KOG0146 RNA-binding protein ET 98.2 1.3E-06 2.9E-11 83.6 5.4 84 221-321 281-365 (371)
108 KOG1365 RNA-binding protein Fu 98.2 1.3E-05 2.9E-10 80.0 11.6 150 225-392 60-216 (508)
109 KOG0116 RasGAP SH3 binding pro 98.2 3.5E-06 7.6E-11 86.5 7.6 80 223-319 286-365 (419)
110 KOG0111 Cyclophilin-type pepti 98.2 9E-07 1.9E-11 82.6 2.6 54 334-391 8-61 (298)
111 KOG4676 Splicing factor, argin 98.1 1.1E-06 2.3E-11 87.8 2.8 143 226-390 8-197 (479)
112 KOG4660 Protein Mei2, essentia 98.1 1.8E-06 3.9E-11 89.6 4.2 71 222-314 72-143 (549)
113 KOG0533 RRM motif-containing p 98.1 8.4E-06 1.8E-10 78.1 7.8 79 225-321 83-162 (243)
114 KOG1190 Polypyrimidine tract-b 98.0 6.6E-06 1.4E-10 82.7 6.1 137 224-391 27-197 (492)
115 KOG4208 Nucleolar RNA-binding 98.0 1.1E-05 2.4E-10 74.7 5.6 57 333-392 46-102 (214)
116 KOG0130 RNA-binding protein RB 98.0 7E-06 1.5E-10 71.6 3.8 53 335-391 71-123 (170)
117 KOG1456 Heterogeneous nuclear 97.9 0.00021 4.5E-09 71.5 12.7 143 222-391 284-456 (494)
118 PF04059 RRM_2: RNA recognitio 97.7 0.00029 6.3E-09 58.5 9.5 77 226-319 2-85 (97)
119 KOG0415 Predicted peptidyl pro 97.7 3.6E-05 7.7E-10 76.4 4.0 56 333-392 236-291 (479)
120 KOG0226 RNA-binding proteins [ 97.6 3.9E-05 8.4E-10 73.2 3.6 143 225-392 96-242 (290)
121 PF11608 Limkain-b1: Limkain b 97.6 0.00018 3.8E-09 58.1 6.5 67 226-319 3-75 (90)
122 smart00361 RRM_1 RNA recogniti 97.5 0.00012 2.6E-09 56.6 4.4 39 350-392 2-47 (70)
123 KOG0226 RNA-binding proteins [ 97.5 0.00011 2.5E-09 70.1 5.1 77 225-318 190-267 (290)
124 KOG4307 RNA binding protein RB 97.5 0.00019 4.1E-09 76.5 6.6 145 225-392 311-486 (944)
125 PF04059 RRM_2: RNA recognitio 97.5 0.0002 4.4E-09 59.4 5.5 54 337-392 2-55 (97)
126 KOG1456 Heterogeneous nuclear 97.5 0.00072 1.6E-08 67.7 10.0 135 223-391 29-168 (494)
127 KOG0153 Predicted RNA-binding 97.4 0.00015 3.2E-09 71.9 4.5 49 335-393 227-275 (377)
128 KOG2193 IGF-II mRNA-binding pr 97.4 8.8E-05 1.9E-09 75.1 2.5 108 227-372 3-112 (584)
129 KOG4210 Nuclear localization s 97.2 0.0002 4.3E-09 70.5 2.8 81 224-321 183-264 (285)
130 KOG0116 RasGAP SH3 binding pro 97.2 0.00051 1.1E-08 70.8 5.4 52 336-391 288-339 (419)
131 KOG1457 RNA binding protein (c 97.2 0.00036 7.8E-09 65.7 3.9 67 221-308 206-273 (284)
132 KOG4209 Splicing factor RNPS1, 97.1 0.00038 8.2E-09 66.6 3.2 55 333-391 98-152 (231)
133 KOG0128 RNA-binding protein SA 97.1 6.1E-05 1.3E-09 81.7 -2.5 145 226-392 572-719 (881)
134 PLN03213 repressor of silencin 97.0 0.00082 1.8E-08 69.4 5.1 39 335-379 9-47 (759)
135 KOG0132 RNA polymerase II C-te 96.9 0.00099 2.1E-08 72.0 4.8 48 335-392 420-467 (894)
136 COG5175 MOT2 Transcriptional r 96.9 0.0016 3.4E-08 64.6 5.6 115 226-357 115-241 (480)
137 KOG0106 Alternative splicing f 96.8 0.00075 1.6E-08 63.7 3.0 71 223-318 97-168 (216)
138 KOG4206 Spliceosomal protein s 96.8 0.0048 1E-07 58.2 7.8 77 220-318 141-219 (221)
139 KOG3152 TBP-binding protein, a 96.8 0.0014 3.1E-08 62.7 4.2 84 224-312 73-157 (278)
140 KOG1855 Predicted RNA-binding 96.7 0.0015 3.3E-08 66.5 4.1 83 215-304 221-306 (484)
141 KOG4454 RNA binding protein (R 96.6 0.0013 2.8E-08 61.9 2.7 54 334-393 7-60 (267)
142 PF08777 RRM_3: RNA binding mo 96.5 0.0052 1.1E-07 51.7 5.7 53 226-301 2-54 (105)
143 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.015 3.3E-07 48.6 8.0 82 225-318 6-89 (100)
144 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.006 1.3E-07 45.0 4.9 52 226-301 2-53 (53)
145 KOG1995 Conserved Zn-finger pr 96.4 0.0039 8.4E-08 62.3 4.9 89 222-319 63-152 (351)
146 KOG4661 Hsp27-ERE-TATA-binding 96.3 0.0043 9.3E-08 65.2 4.8 52 336-391 405-456 (940)
147 KOG0129 Predicted RNA-binding 96.3 0.01 2.2E-07 61.9 7.1 63 223-302 368-431 (520)
148 PF13893 RRM_5: RNA recognitio 96.2 0.0069 1.5E-07 44.2 3.9 31 353-392 1-31 (56)
149 KOG1548 Transcription elongati 96.2 0.021 4.6E-07 57.0 8.4 78 222-320 262-351 (382)
150 KOG4307 RNA binding protein RB 96.2 0.013 2.8E-07 63.0 7.3 74 226-317 868-943 (944)
151 KOG0533 RRM motif-containing p 96.1 0.0072 1.6E-07 58.1 4.8 52 336-392 83-134 (243)
152 KOG4660 Protein Mei2, essentia 95.8 0.0071 1.5E-07 63.4 3.5 50 333-391 72-121 (549)
153 PF08952 DUF1866: Domain of un 95.8 0.04 8.7E-07 49.0 7.8 74 222-320 24-106 (146)
154 KOG0115 RNA-binding protein p5 95.3 0.022 4.7E-07 54.8 4.4 76 296-392 6-82 (275)
155 KOG0112 Large RNA-binding prot 95.2 0.026 5.7E-07 62.2 5.3 78 223-323 453-533 (975)
156 KOG0107 Alternative splicing f 95.2 0.024 5.2E-07 51.8 4.1 37 336-376 10-46 (195)
157 KOG2314 Translation initiation 95.0 0.048 1E-06 57.6 6.3 74 225-316 58-139 (698)
158 KOG2416 Acinus (induces apopto 94.9 0.017 3.7E-07 61.1 2.9 76 221-319 440-520 (718)
159 KOG1996 mRNA splicing factor [ 94.7 0.081 1.8E-06 51.9 6.6 65 239-319 300-365 (378)
160 KOG0151 Predicted splicing reg 94.6 0.032 6.9E-07 60.2 3.9 54 335-392 173-229 (877)
161 KOG0105 Alternative splicing f 94.1 0.14 3E-06 47.4 6.3 61 224-308 114-175 (241)
162 PLN03120 nucleic acid binding 94.0 0.042 9E-07 53.4 3.0 27 336-362 4-30 (260)
163 KOG4849 mRNA cleavage factor I 93.9 0.044 9.5E-07 54.9 3.0 76 226-318 81-159 (498)
164 PF03467 Smg4_UPF3: Smg-4/UPF3 93.9 0.063 1.4E-06 49.3 3.8 80 225-319 7-96 (176)
165 PLN03121 nucleic acid binding 93.7 0.059 1.3E-06 51.7 3.4 28 335-362 4-31 (243)
166 PF08675 RNA_bind: RNA binding 93.6 0.3 6.4E-06 39.6 6.7 51 226-302 10-60 (87)
167 PF08777 RRM_3: RNA binding mo 93.2 0.12 2.6E-06 43.4 4.1 46 337-392 2-47 (105)
168 KOG4849 mRNA cleavage factor I 93.2 0.034 7.4E-07 55.6 0.9 54 336-391 80-133 (498)
169 KOG2202 U2 snRNP splicing fact 93.1 0.041 8.9E-07 52.9 1.4 62 240-319 83-146 (260)
170 PF10309 DUF2414: Protein of u 91.7 0.71 1.5E-05 35.3 6.3 50 226-301 6-59 (62)
171 PF07292 NID: Nmi/IFP 35 domai 90.9 0.2 4.4E-06 40.9 2.8 72 287-358 1-74 (88)
172 PF15023 DUF4523: Protein of u 90.5 0.96 2.1E-05 40.3 6.8 74 222-319 83-160 (166)
173 PF14605 Nup35_RRM_2: Nup53/35 89.3 0.62 1.3E-05 34.2 4.0 45 337-392 2-46 (53)
174 KOG1855 Predicted RNA-binding 88.5 0.79 1.7E-05 47.3 5.4 38 334-375 229-266 (484)
175 KOG4676 Splicing factor, argin 88.1 0.43 9.4E-06 48.6 3.2 52 337-392 8-62 (479)
176 KOG2253 U1 snRNP complex, subu 87.4 0.13 2.8E-06 55.3 -1.0 112 223-360 38-159 (668)
177 KOG2135 Proteins containing th 86.8 0.36 7.8E-06 50.2 1.8 73 225-320 372-445 (526)
178 KOG1995 Conserved Zn-finger pr 86.7 0.57 1.2E-05 47.2 3.1 54 335-392 65-126 (351)
179 KOG4285 Mitotic phosphoprotein 86.1 2.3 5E-05 42.2 6.9 70 226-319 198-268 (350)
180 KOG2068 MOT2 transcription fac 86.1 0.36 7.9E-06 48.2 1.4 81 225-319 77-161 (327)
181 PF07576 BRAP2: BRCA1-associat 84.7 8.7 0.00019 32.6 9.0 66 226-310 14-81 (110)
182 KOG0115 RNA-binding protein p5 83.1 1.5 3.4E-05 42.4 4.1 59 226-302 32-90 (275)
183 PF14111 DUF4283: Domain of un 82.7 1.6 3.4E-05 38.0 3.9 84 285-375 56-140 (153)
184 KOG0804 Cytoplasmic Zn-finger 82.3 8 0.00017 40.4 9.1 67 225-310 74-142 (493)
185 PF04847 Calcipressin: Calcipr 79.0 4.5 9.8E-05 37.5 5.6 60 238-320 8-70 (184)
186 KOG2314 Translation initiation 78.0 3.2 7E-05 44.3 4.8 50 337-391 59-114 (698)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 77.7 1.7 3.7E-05 39.8 2.5 53 336-392 7-65 (176)
188 KOG3152 TBP-binding protein, a 75.1 3.2 7E-05 40.3 3.6 38 337-378 75-112 (278)
189 PF08675 RNA_bind: RNA binding 74.1 8.3 0.00018 31.4 5.2 43 337-392 10-52 (87)
190 KOG2591 c-Mpl binding protein, 67.7 10 0.00022 40.7 5.5 69 223-315 173-246 (684)
191 PF11608 Limkain-b1: Limkain b 67.2 9.2 0.0002 31.3 4.0 43 337-392 3-49 (90)
192 KOG2318 Uncharacterized conser 66.9 19 0.0004 38.9 7.3 96 222-317 171-302 (650)
193 PF11767 SET_assoc: Histone ly 66.6 27 0.00058 27.0 6.4 54 236-315 11-65 (66)
194 KOG4574 RNA-binding protein (c 66.4 3.8 8.2E-05 45.7 2.2 73 225-320 298-373 (1007)
195 KOG4483 Uncharacterized conser 63.6 15 0.00032 38.0 5.6 65 224-312 390-455 (528)
196 KOG4410 5-formyltetrahydrofola 61.6 12 0.00025 37.1 4.3 49 224-295 329-378 (396)
197 PF03880 DbpA: DbpA RNA bindin 51.0 22 0.00048 27.6 3.6 58 235-318 11-74 (74)
198 TIGR02542 B_forsyth_147 Bacter 44.2 43 0.00092 29.0 4.5 114 233-390 11-127 (145)
199 KOG2416 Acinus (induces apopto 44.0 9.1 0.0002 41.3 0.6 50 333-391 441-490 (718)
200 KOG2891 Surface glycoprotein [ 43.5 39 0.00086 33.4 4.8 52 333-388 146-214 (445)
201 KOG4410 5-formyltetrahydrofola 39.8 37 0.00081 33.7 4.0 48 336-392 330-377 (396)
202 PF07576 BRAP2: BRCA1-associat 37.1 1.4E+02 0.0031 25.3 6.7 53 335-392 12-64 (110)
203 KOG0156 Cytochrome P450 CYP2 s 34.7 49 0.0011 35.2 4.3 59 228-313 35-97 (489)
204 PF03468 XS: XS domain; Inter 33.6 52 0.0011 28.1 3.5 58 227-304 10-77 (116)
205 PF10567 Nab6_mRNP_bdg: RNA-re 33.5 64 0.0014 32.2 4.5 158 222-391 12-200 (309)
206 KOG1295 Nonsense-mediated deca 32.3 50 0.0011 33.9 3.7 70 225-308 7-77 (376)
207 KOG2318 Uncharacterized conser 29.9 71 0.0015 34.7 4.4 43 333-375 171-214 (650)
208 KOG4008 rRNA processing protei 29.3 42 0.00091 32.4 2.4 36 222-257 37-72 (261)
209 KOG2253 U1 snRNP complex, subu 29.2 23 0.00049 38.8 0.7 46 333-391 37-82 (668)
210 PF03468 XS: XS domain; Inter 26.4 41 0.00088 28.8 1.7 37 348-391 29-65 (116)
211 KOG2891 Surface glycoprotein [ 25.0 57 0.0012 32.3 2.5 34 225-258 149-194 (445)
212 PF05172 Nup35_RRM: Nup53/35/4 20.3 1.4E+02 0.0031 24.8 3.7 52 336-392 6-64 (100)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=6.3e-26 Score=227.02 Aligned_cols=139 Identities=21% Similarity=0.341 Sum_probs=123.8
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++|+++|+++|..||.|.+|+|+.+.. ++.++|||||+|.+.++|..|| .
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~-----------------tg~srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK-----------------TGYSFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCccCcEEEEEEccHHHHHHHHHH
Confidence 468999999999999999999999999999999977652 2346699999999999999999 6
Q ss_pred hcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCc
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~k 382 (393)
||+..|.++.|.|.++.+... .....+|||+|||+.+|+++|+++|..| |.|..|+|++|..+|.++
T Consensus 169 LnG~~l~gr~i~V~~a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~f----G~V~~v~i~~d~~tg~~k 235 (346)
T TIGR01659 169 LNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GQIVQKNILRDKLTGTPR 235 (346)
T ss_pred cCCCccCCceeeeeccccccc---------ccccceeEEeCCCCcccHHHHHHHHHhc----CCEEEEEEeecCCCCccc
Confidence 999999999999999865321 1234689999999999999999999999 999999999999999999
Q ss_pred cEEEEEeeec
Q 016231 383 GIAYVLFKTR 392 (393)
Q Consensus 383 GfaFVeF~t~ 392 (393)
|||||+|.++
T Consensus 236 G~aFV~F~~~ 245 (346)
T TIGR01659 236 GVAFVRFNKR 245 (346)
T ss_pred eEEEEEECCH
Confidence 9999999874
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=7.5e-25 Score=231.30 Aligned_cols=148 Identities=18% Similarity=0.366 Sum_probs=124.4
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||||||+.+++++|+.+|..||.|.+|+|+.++. +++++|||||+|.+.++|+.|| .
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~-----------------TgkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC-----------------CCCcCCeEEEEeCcHHHHHHHHHh
Confidence 468999999999999999999999999999999987652 2346799999999999999999 6
Q ss_pred hcCceeCCeEEEEeecCCCcccCCCC--CCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKGE--DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~~--~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~ 380 (393)
|||..|.|+.|.|.+........... .........+|||+|||+++++++|+++|+.| |.|.+|+|++|+.+|.
T Consensus 169 lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F----G~I~svrl~~D~~tgk 244 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRG 244 (612)
T ss_pred cCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCC
Confidence 99999999999998754321111000 01112245799999999999999999999999 9999999999999999
Q ss_pred CccEEEEEeeec
Q 016231 381 GKGIAYVLFKTR 392 (393)
Q Consensus 381 ~kGfaFVeF~t~ 392 (393)
++|||||+|.+.
T Consensus 245 sKGfGFVeFe~~ 256 (612)
T TIGR01645 245 HKGYGFIEYNNL 256 (612)
T ss_pred cCCeEEEEECCH
Confidence 999999999873
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=1.2e-24 Score=216.12 Aligned_cols=138 Identities=17% Similarity=0.353 Sum_probs=123.2
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+|||+|||+.+|+++|+++|+.||+|.+|+|++++. ++.++|||||+|.+.++|..|| .|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~-----------------~g~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV-----------------TGQSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC-----------------CCccceEEEEEECcHHHHHHHHhhc
Confidence 57899999999999999999999999999999988652 2347799999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
||..|.|+.|.|.++.+... .....+|||+|||..+++++|+.+|+.| |.|..++|+.+..+|.++|
T Consensus 66 ~g~~l~g~~i~v~~a~~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g 132 (352)
T TIGR01661 66 NGLRLQNKTIKVSYARPSSD---------SIKGANLYVSGLPKTMTQHELESIFSPF----GQIITSRILSDNVTGLSKG 132 (352)
T ss_pred ccEEECCeeEEEEeeccccc---------ccccceEEECCccccCCHHHHHHHHhcc----CCEEEEEEEecCCCCCcCc
Confidence 99999999999999865421 1234689999999999999999999999 9999999999988899999
Q ss_pred EEEEEeeec
Q 016231 384 IAYVLFKTR 392 (393)
Q Consensus 384 faFVeF~t~ 392 (393)
||||+|.+.
T Consensus 133 ~~fv~f~~~ 141 (352)
T TIGR01661 133 VGFIRFDKR 141 (352)
T ss_pred EEEEEECCH
Confidence 999999863
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.1e-24 Score=222.16 Aligned_cols=152 Identities=24% Similarity=0.367 Sum_probs=127.1
Q ss_pred cCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
+.....++|||+|||+.+++++|.++|+.||.|..|+|+.+.. + +.++|||||+|.+.++|..
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~--~---------------~~skg~afVeF~~~e~A~~ 146 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN--S---------------RRSKGVAYVEFYDVESVIK 146 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC--C---------------CCcceEEEEEECCHHHHHH
Confidence 3345679999999999999999999999999999999977542 2 2366999999999999999
Q ss_pred HHHhcCceeCCeEEEEeecCCCcccCCC---CCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecC
Q 016231 300 ALAFNMAVIGGNHIRLDRACPPRKKLKG---EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (393)
Q Consensus 300 Al~lng~~~~Gr~I~V~~a~~~~~~~~~---~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~ 376 (393)
||.|+|..|.|+.|.|..+......... ..........+|||+|||..+++++|+++|..| |.|..|.|++++
T Consensus 147 Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~ 222 (457)
T TIGR01622 147 ALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDP 222 (457)
T ss_pred HHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcC
Confidence 9999999999999999887543221111 001112236899999999999999999999999 999999999999
Q ss_pred CCCCCccEEEEEeeec
Q 016231 377 HMRVGKGIAYVLFKTR 392 (393)
Q Consensus 377 ~tg~~kGfaFVeF~t~ 392 (393)
.+|.++|||||+|.+.
T Consensus 223 ~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDA 238 (457)
T ss_pred CCCccceEEEEEECCH
Confidence 9999999999999863
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=1.5e-22 Score=201.21 Aligned_cols=147 Identities=24% Similarity=0.349 Sum_probs=119.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.++|||+|||+.+++++|..+|..||.|..++++.+.. .+.++|||||+|.+.++|+.|| .|
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----------------~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV-----------------TGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC-----------------CCCcCcEEEEEECCHHHHHHHHHHh
Confidence 56899999999999999999999999999999976542 1236699999999999999999 79
Q ss_pred cCceeCC--eEEEEeecCCCcccCC--------------CCC--------------------------------------
Q 016231 304 NMAVIGG--NHIRLDRACPPRKKLK--------------GED-------------------------------------- 329 (393)
Q Consensus 304 ng~~~~G--r~I~V~~a~~~~~~~~--------------~~~-------------------------------------- 329 (393)
||..+.| +.|.|.++..+..... ...
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9999877 6788888754321000 000
Q ss_pred -------------CC------------------CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC
Q 016231 330 -------------AP------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (393)
Q Consensus 330 -------------~~------------------~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t 378 (393)
.+ ....+.+|||+|||+++++++|+++|+.| |.|.+|+|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f----G~v~~v~i~~d~~t 307 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF----GAVQNVKIIRDLTT 307 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeEcCCC
Confidence 00 00112369999999999999999999999 99999999999999
Q ss_pred CCCccEEEEEeeec
Q 016231 379 RVGKGIAYVLFKTR 392 (393)
Q Consensus 379 g~~kGfaFVeF~t~ 392 (393)
|.++|||||+|.+.
T Consensus 308 ~~skG~aFV~F~~~ 321 (352)
T TIGR01661 308 NQCKGYGFVSMTNY 321 (352)
T ss_pred CCccceEEEEECCH
Confidence 99999999999874
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=9.2e-23 Score=215.79 Aligned_cols=137 Identities=23% Similarity=0.390 Sum_probs=119.5
Q ss_pred EEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcC
Q 016231 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (393)
Q Consensus 227 tVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng 305 (393)
+|||||||+++|+++|+++|+.||.|.+|+|+++.. + ++++|||||+|.+.++|+.|| .+|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~--t---------------~~s~G~afV~F~~~~~A~~Al~~ln~ 64 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV--T---------------RRSLGYGYVNFQNPADAERALETMNF 64 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHHHHhCC
Confidence 699999999999999999999999999999988652 1 236699999999999999999 7999
Q ss_pred ceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEE
Q 016231 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (393)
Q Consensus 306 ~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfa 385 (393)
..|.|+.|+|.|+...... ......+|||+|||.++++++|+++|+.| |.|.+|+|+++ .+|.++|||
T Consensus 65 ~~i~gk~i~i~~s~~~~~~-------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~----G~i~~~~i~~~-~~g~skg~a 132 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSL-------RRSGVGNIFVKNLDKSVDNKALFDTFSKF----GNILSCKVATD-ENGKSRGYG 132 (562)
T ss_pred CEECCeeEEeecccccccc-------cccCCCceEEcCCCccCCHHHHHHHHHhc----CCcceeEeeec-CCCCcccEE
Confidence 9999999999997532111 12234689999999999999999999999 99999999999 478899999
Q ss_pred EEEeeec
Q 016231 386 YVLFKTR 392 (393)
Q Consensus 386 FVeF~t~ 392 (393)
||+|.+.
T Consensus 133 fV~F~~~ 139 (562)
T TIGR01628 133 FVHFEKE 139 (562)
T ss_pred EEEECCH
Confidence 9999864
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=3.3e-22 Score=208.34 Aligned_cols=145 Identities=20% Similarity=0.427 Sum_probs=116.5
Q ss_pred cCCCcccEEEEeCCCccCCHHHHHHHhccc------------CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEE
Q 016231 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKF------------GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHA 287 (393)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~------------G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~A 287 (393)
......++|||||||+.+|+++|..||..| +.|..+.+ +.++|||
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~kg~a 226 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----------------------NKEKNFA 226 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----------------------CCCCCEE
Confidence 445668999999999999999999999975 23333333 1255899
Q ss_pred EEeeCCHHHHHHHHHhcCceeCCeEEEEeecCCCcccC--------CC------------CCCCCcCCcceeeeCCCCCC
Q 016231 288 YIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKL--------KG------------EDAPLYDIKKTVFVGNLPFD 347 (393)
Q Consensus 288 FVeF~s~e~A~~Al~lng~~~~Gr~I~V~~a~~~~~~~--------~~------------~~~~~~~~~~tLfVgNLp~~ 347 (393)
||+|.+.++|..||.|||..|.|+.|.|.+........ .. .........++|||+|||+.
T Consensus 227 fVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 306 (509)
T TIGR01642 227 FLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLY 306 (509)
T ss_pred EEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCC
Confidence 99999999999999999999999999997653211000 00 00011234579999999999
Q ss_pred CCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 348 ~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+
T Consensus 307 ~~~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 307 LGEDQIKELLESF----GDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred CCHHHHHHHHHhc----CCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 9999999999999 999999999999999999999999976
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.2e-21 Score=180.23 Aligned_cols=141 Identities=23% Similarity=0.437 Sum_probs=120.9
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..-||||.|...++-+.|++.|..||+|..+++++|.. +++++||+||.|.+.++|+.|| .|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~-----------------T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN-----------------TGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeeccc-----------------CCcccceeEEeccchHHHHHHHHHh
Confidence 56799999999999999999999999999999988762 3457799999999999999999 79
Q ss_pred cCceeCCeEEEEeecCCCcccCCCC-----C--CCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecC
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGE-----D--APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~-----~--~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~ 376 (393)
||+.|.+|.|+-.|+.++....-.. + ........+|||||++.-+|+++|++.|..| |.|..|||..+
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f----G~I~EVRvFk~- 199 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF----GPIQEVRVFKD- 199 (321)
T ss_pred CCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC----CcceEEEEecc-
Confidence 9999999999999997643111110 0 1224456899999999999999999999999 99999999988
Q ss_pred CCCCCccEEEEEeeec
Q 016231 377 HMRVGKGIAYVLFKTR 392 (393)
Q Consensus 377 ~tg~~kGfaFVeF~t~ 392 (393)
+|||||.|.+.
T Consensus 200 -----qGYaFVrF~tk 210 (321)
T KOG0148|consen 200 -----QGYAFVRFETK 210 (321)
T ss_pred -----cceEEEEecch
Confidence 68999999874
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=5.6e-21 Score=194.16 Aligned_cols=146 Identities=32% Similarity=0.456 Sum_probs=121.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
...|.|+||||.+.+.+|..+|+.||.|..|.|++.+ + +.-+|||||.|....+|..|| .+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~--d----------------gklcGFaFV~fk~~~dA~~Al~~~ 178 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK--D----------------GKLCGFAFVQFKEKKDAEKALEFF 178 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC--C----------------CCccceEEEEEeeHHHHHHHHHhc
Confidence 4679999999999999999999999999999996533 2 234599999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCcccCC---------------------------------------------------------
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLK--------------------------------------------------------- 326 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~--------------------------------------------------------- 326 (393)
|+..|.||+|.|+||.+......
T Consensus 179 N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~ 258 (678)
T KOG0127|consen 179 NGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEES 258 (678)
T ss_pred cCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccc
Confidence 99999999999999843211000
Q ss_pred ------CCCC--C----------------CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCc
Q 016231 327 ------GEDA--P----------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (393)
Q Consensus 327 ------~~~~--~----------------~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~k 382 (393)
.++. + ......+|||+|||+++|+++|.++|+.| |.|.++.|+.++.||.++
T Consensus 259 Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF----G~v~ya~iV~~k~T~~sk 334 (678)
T KOG0127|consen 259 EEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF----GEVKYAIIVKDKDTGHSK 334 (678)
T ss_pred cccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh----ccceeEEEEeccCCCCcc
Confidence 0000 0 01113799999999999999999999999 999999999999999999
Q ss_pred cEEEEEeeec
Q 016231 383 GIAYVLFKTR 392 (393)
Q Consensus 383 GfaFVeF~t~ 392 (393)
|.|||.|.+.
T Consensus 335 GtAFv~Fkt~ 344 (678)
T KOG0127|consen 335 GTAFVKFKTQ 344 (678)
T ss_pred cceEEEeccH
Confidence 9999999875
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.85 E-value=1e-20 Score=200.21 Aligned_cols=146 Identities=23% Similarity=0.389 Sum_probs=122.4
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++|+++|+.+|+.||.|.+|.++++. . +.++|||||.|.+.++|..|+ .
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~---~---------------g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG---S---------------GRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC---C---------------CCcccEEEEEECCHHHHHHHHHH
Confidence 35789999999999999999999999999999997653 1 236699999999999999999 6
Q ss_pred hcCceeC----CeEEEEeecCCCcccCC---------CCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE
Q 016231 303 FNMAVIG----GNHIRLDRACPPRKKLK---------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (393)
Q Consensus 303 lng~~~~----Gr~I~V~~a~~~~~~~~---------~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~ 369 (393)
+|+..|. |+.|.|.++........ ...........+|||+||+..+++++|+++|+.| |.|.+
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~----G~i~~ 314 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC----GEITS 314 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc----CCeEE
Confidence 9999999 99999998865432210 0001112345689999999999999999999999 99999
Q ss_pred EEEeecCCCCCCccEEEEEeeec
Q 016231 370 VRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 370 VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+|+.| .+|.++|||||+|.+.
T Consensus 315 ~~i~~d-~~g~~~g~gfV~f~~~ 336 (562)
T TIGR01628 315 AKVMLD-EKGVSRGFGFVCFSNP 336 (562)
T ss_pred EEEEEC-CCCCcCCeEEEEeCCH
Confidence 999999 7899999999999874
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.6e-20 Score=187.33 Aligned_cols=134 Identities=25% Similarity=0.408 Sum_probs=117.4
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...+-||||.||.++.|++|.-+|...|+|..+|||++++ + |.+||||||.|.+.+.|+.|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~--s---------------G~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF--S---------------GDNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc--C---------------CCCcceEEEEeecHHHHHHHHH
Confidence 3468899999999999999999999999999999999874 2 346799999999999999999
Q ss_pred HhcCcee-CCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecC-CCC
Q 016231 302 AFNMAVI-GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMR 379 (393)
Q Consensus 302 ~lng~~~-~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~-~tg 379 (393)
.||+.+| .|+.|.|+.+. ...+|||||||.++++++|.+.|...+. | |+.|.|+..+ +..
T Consensus 144 ~lnn~Eir~GK~igvc~Sv---------------an~RLFiG~IPK~k~keeIlee~~kVte--G-VvdVivy~~p~dk~ 205 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCVSV---------------ANCRLFIGNIPKTKKKEEILEEMKKVTE--G-VVDVIVYPSPDDKT 205 (506)
T ss_pred HhhCccccCCCEeEEEEee---------------ecceeEeccCCccccHHHHHHHHHhhCC--C-eeEEEEecCccccc
Confidence 6999877 69999999874 3469999999999999999999999853 4 6778877776 467
Q ss_pred CCccEEEEEeee
Q 016231 380 VGKGIAYVLFKT 391 (393)
Q Consensus 380 ~~kGfaFVeF~t 391 (393)
++||||||+|.+
T Consensus 206 KNRGFaFveYe~ 217 (506)
T KOG0117|consen 206 KNRGFAFVEYES 217 (506)
T ss_pred cccceEEEEeec
Confidence 899999999976
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.84 E-value=1.4e-20 Score=198.39 Aligned_cols=134 Identities=22% Similarity=0.351 Sum_probs=110.3
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++++++|+.+|+.||.|.+|+|+++. + +.++|||||+|.+.++|+.|| .
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~---s---------------G~sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF---S---------------GQNRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC---C---------------CCccceEEEEeCCHHHHHHHHHH
Confidence 35899999999999999999999999999999997762 2 346799999999999999999 6
Q ss_pred hcCceeC-CeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCC
Q 016231 303 FNMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (393)
Q Consensus 303 lng~~~~-Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~ 381 (393)
||+..|. |+.|.|.++. ..++|||+|||.++++++|.++|..+.. |.+..|.+......+.+
T Consensus 119 lng~~i~~Gr~l~V~~S~---------------~~~rLFVgNLP~~~TeeeL~eeFskv~e--gvv~vIv~~~~~~kgKn 181 (578)
T TIGR01648 119 LNNYEIRPGRLLGVCISV---------------DNCRLFVGGIPKNKKREEILEEFSKVTE--GVVDVIVYHSAADKKKN 181 (578)
T ss_pred cCCCeecCCccccccccc---------------cCceeEeecCCcchhhHHHHHHhhcccC--CceEEEEeccccccCcc
Confidence 9998885 7887776653 2468999999999999999999999832 33333334444456788
Q ss_pred ccEEEEEeeec
Q 016231 382 KGIAYVLFKTR 392 (393)
Q Consensus 382 kGfaFVeF~t~ 392 (393)
+|||||+|.+.
T Consensus 182 RGFAFVeF~s~ 192 (578)
T TIGR01648 182 RGFAFVEYESH 192 (578)
T ss_pred CceEEEEcCCH
Confidence 99999999873
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.84 E-value=5.1e-20 Score=192.03 Aligned_cols=138 Identities=22% Similarity=0.265 Sum_probs=113.4
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~- 302 (393)
++++|||+|||+.+++++|+++|+.||.|.+|.|+. ++|||||+|.+.++|..|+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----------------------~k~~afVef~~~e~A~~Ai~~ 57 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----------------------GKRQALVEFEDEESAKACVNF 57 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----------------------CCCEEEEEeCchHHHHHHHHH
Confidence 378999999999999999999999999999998853 33799999999999999994
Q ss_pred --hcCceeCCeEEEEeecCCCcccCCCC---CCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCC
Q 016231 303 --FNMAVIGGNHIRLDRACPPRKKLKGE---DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (393)
Q Consensus 303 --lng~~~~Gr~I~V~~a~~~~~~~~~~---~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~ 377 (393)
+++..|.|+.|.|.++.......... .........+|||+||++.+|+++|+++|+.| |.|..|.|+++.
T Consensus 58 ~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~----G~V~~v~i~~~~- 132 (481)
T TIGR01649 58 ATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY----GKVLRIVTFTKN- 132 (481)
T ss_pred hhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc----CCEEEEEEEecC-
Confidence 57899999999999986543211110 01111234589999999999999999999999 999999998774
Q ss_pred CCCCccEEEEEeeec
Q 016231 378 MRVGKGIAYVLFKTR 392 (393)
Q Consensus 378 tg~~kGfaFVeF~t~ 392 (393)
.+|+|||+|.+.
T Consensus 133 ---~~~~afVef~~~ 144 (481)
T TIGR01649 133 ---NVFQALVEFESV 144 (481)
T ss_pred ---CceEEEEEECCH
Confidence 247999999873
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=9.5e-21 Score=188.20 Aligned_cols=145 Identities=21% Similarity=0.420 Sum_probs=121.4
Q ss_pred CCcCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 218 FDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 218 ~~~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
.+..+...-.+|||.||..++|.+|+.+|++||.|.+|.|++|+.+ +.++|||||.|.+.++|
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t-----------------~~s~gcCFv~~~trk~a 89 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST-----------------GQSKGCCFVKYYTRKEA 89 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc-----------------CcccceEEEEeccHHHH
Confidence 3444455778999999999999999999999999999999887642 34679999999999999
Q ss_pred HHHH-Hh-cCceeCC--eEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEe
Q 016231 298 EAAL-AF-NMAVIGG--NHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVI 373 (393)
Q Consensus 298 ~~Al-~l-ng~~~~G--r~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~ 373 (393)
..|+ +| |...|.| .+|.|.++...... ....++||||-|+..+|+.+|+++|..| |.|+.|+|+
T Consensus 90 ~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er--------~~~e~KLFvg~lsK~~te~evr~iFs~f----G~Ied~~il 157 (510)
T KOG0144|consen 90 DEAINALHNQKTLPGMHHPVQVKYADGERER--------IVEERKLFVGMLSKQCTENEVREIFSRF----GHIEDCYIL 157 (510)
T ss_pred HHHHHHhhcccccCCCCcceeecccchhhhc--------cccchhhhhhhccccccHHHHHHHHHhh----Cccchhhhe
Confidence 9999 55 4556766 56777777543321 1235789999999999999999999999 999999999
Q ss_pred ecCCCCCCccEEEEEeeec
Q 016231 374 RHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 374 ~d~~tg~~kGfaFVeF~t~ 392 (393)
+|+ .|.+||+|||+|.++
T Consensus 158 rd~-~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 158 RDP-DGLSRGCAFVKFSTK 175 (510)
T ss_pred ecc-cccccceeEEEEehH
Confidence 996 599999999999875
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.83 E-value=1.9e-20 Score=168.15 Aligned_cols=140 Identities=24% Similarity=0.459 Sum_probs=121.4
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
....|||||||+..++++.|+++|-++|+|..+.|+++..+. .+.|||||+|.++++|+.|+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~-----------------~~qGygF~Ef~~eedadYAik 69 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ-----------------KHQGYGFAEFRTEEDADYAIK 69 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc-----------------cccceeEEEEechhhhHHHHH
Confidence 346899999999999999999999999999999998876432 35699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE-EEEeecCCCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRV 380 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~-VrI~~d~~tg~ 380 (393)
-||+..+.|++|+|..+.... .....+..|||+||.+.+++.-|++.|+.| |.|.. -.|++++.||.
T Consensus 70 iln~VkLYgrpIrv~kas~~~--------~nl~vganlfvgNLd~~vDe~~L~dtFsaf----G~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 70 ILNMVKLYGRPIRVNKASAHQ--------KNLDVGANLFVGNLDPEVDEKLLYDTFSAF----GVLISPPKIMRDPDTGN 137 (203)
T ss_pred HHHHHHhcCceeEEEeccccc--------ccccccccccccccCcchhHHHHHHHHHhc----cccccCCcccccccCCC
Confidence 599999999999999987221 112334789999999999999999999999 77665 47999999999
Q ss_pred CccEEEEEeee
Q 016231 381 GKGIAYVLFKT 391 (393)
Q Consensus 381 ~kGfaFVeF~t 391 (393)
++|||||-|.+
T Consensus 138 ~~~~g~i~~~s 148 (203)
T KOG0131|consen 138 PKGFGFINYAS 148 (203)
T ss_pred CCCCeEEechh
Confidence 99999999976
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.9e-20 Score=188.11 Aligned_cols=145 Identities=21% Similarity=0.339 Sum_probs=122.5
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
.||||++||+.++.++|.++|+.+|+|..+.+++++ +. ..+|||+||.|+..++++.|+ ..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~----gs-------------~~~RGfgfVtFam~ED~qrA~~e~~ 68 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNK----GS-------------SEKRGFGFVTFAMEEDVQRALAETE 68 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCC----Cc-------------ccccCccceeeehHhHHHHHHHHhh
Confidence 799999999999999999999999999999996654 22 237799999999999999999 689
Q ss_pred CceeCCeEEEEeecCCCcccCCC-------------CC----CCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCe
Q 016231 305 MAVIGGNHIRLDRACPPRKKLKG-------------ED----APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~~~-------------~~----~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I 367 (393)
+..|.||.|+|..+.+....... +. .....+..+|+|+||||.+...+|..+|+.| |.|
T Consensus 69 ~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V 144 (678)
T KOG0127|consen 69 QSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF----GKV 144 (678)
T ss_pred cCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc----ceE
Confidence 99999999999999765333211 00 1112346799999999999999999999999 999
Q ss_pred EEEEEeecCCCCCCccEEEEEeeec
Q 016231 368 EAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 368 ~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..|.||+.++.+.| |||||+|...
T Consensus 145 ~Ei~IP~k~dgklc-GFaFV~fk~~ 168 (678)
T KOG0127|consen 145 VEIVIPRKKDGKLC-GFAFVQFKEK 168 (678)
T ss_pred EEEEcccCCCCCcc-ceEEEEEeeH
Confidence 99999999887777 9999999763
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.82 E-value=2.5e-19 Score=186.88 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=114.9
Q ss_pred CcccEEEEeCCCc-cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~-~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
...++|||+|||+ .+|+++|+.+|+.||.|.+|+|+.+ .+|||||+|.+.++|..||
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----------------------~~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----------------------KKETALIEMADPYQAQLAL 330 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----------------------CCCEEEEEECCHHHHHHHH
Confidence 4578999999998 6999999999999999999999653 1389999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCcccCC-------C----CC-----------------CCCcCCcceeeeCCCCCCCCHHH
Q 016231 302 -AFNMAVIGGNHIRLDRACPPRKKLK-------G----ED-----------------APLYDIKKTVFVGNLPFDVKDEE 352 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~~~~~-------~----~~-----------------~~~~~~~~tLfVgNLp~~~teed 352 (393)
.||+..|.|+.|.|.++........ . .+ .....++.+|||+|||+++++++
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~ 410 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED 410 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH
Confidence 6999999999999998754211000 0 00 00124567999999999999999
Q ss_pred HHHHhhcCCCCCCC--eEEEEEeecCCCCCCccEEEEEeeec
Q 016231 353 IYQLFCGLNDLESS--VEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 353 L~e~F~~~~~~~G~--I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+++|..| |. |..|++.... + ..+|||||+|.+.
T Consensus 411 L~~lF~~~----G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~ 446 (481)
T TIGR01649 411 LKELFAEN----GVHKVKKFKFFPKD-N-ERSKMGLLEWESV 446 (481)
T ss_pred HHHHHHhc----CCccceEEEEecCC-C-CcceeEEEEcCCH
Confidence 99999999 77 8888886543 3 3689999999873
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=3.8e-20 Score=180.67 Aligned_cols=146 Identities=18% Similarity=0.387 Sum_probs=123.7
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
-|.||||.|.|.+.|+.|+..|..||+|.+|.+-+++. +++|+|||||+|.-++.|+.|+ .|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~-----------------T~kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccc-----------------cccccceEEEEEeCcHHHHHHHHHh
Confidence 47899999999999999999999999999999988874 3457899999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCC--CCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCC
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGED--APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~--~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~ 381 (393)
||.+++||.|.|.+.+.-...+..-+ ......-.+|||..++++++++||+.+|+.| |.|..|.|.+++.++.+
T Consensus 176 Ng~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGH 251 (544)
T ss_pred ccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh----cceeeEEeeccCCCCCc
Confidence 99999999999987653211111100 0001124799999999999999999999999 99999999999999999
Q ss_pred ccEEEEEeee
Q 016231 382 KGIAYVLFKT 391 (393)
Q Consensus 382 kGfaFVeF~t 391 (393)
+|||||+|.+
T Consensus 252 kGyGfiEy~n 261 (544)
T KOG0124|consen 252 KGYGFIEYNN 261 (544)
T ss_pred cceeeEEecc
Confidence 9999999975
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=7.8e-19 Score=183.06 Aligned_cols=148 Identities=19% Similarity=0.255 Sum_probs=116.2
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+.+|+++|.++|..||.|..+.|+.++. ++.++|||||+|.+.++|..|| .
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----------------~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA-----------------TGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----------------CCCcCeEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999999976541 2346799999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCCCcccCCCCC-------------------CCCcCCcceeeeCCCCCCC----------CHHHH
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKGED-------------------APLYDIKKTVFVGNLPFDV----------KDEEI 353 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~~~-------------------~~~~~~~~tLfVgNLp~~~----------teedL 353 (393)
|||..|.|+.|.|.++........... .....++.+|+|.||.... ..++|
T Consensus 357 l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl 436 (509)
T TIGR01642 357 LNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDV 436 (509)
T ss_pred cCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHH
Confidence 999999999999999864321110000 0012356789999996431 23679
Q ss_pred HHHhhcCCCCCCCeEEEEEeecC---CCCCCccEEEEEeeec
Q 016231 354 YQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTR 392 (393)
Q Consensus 354 ~e~F~~~~~~~G~I~~VrI~~d~---~tg~~kGfaFVeF~t~ 392 (393)
+++|+.| |.|..|.|+++. .++.+.|||||+|.+.
T Consensus 437 ~~~f~~~----G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~ 474 (509)
T TIGR01642 437 KTEFSKY----GPLINIVIPRPNGDRNSTPGVGKVFLEYADV 474 (509)
T ss_pred HHHHHhc----CCeeEEEeeccCcCCCcCCCcceEEEEECCH
Confidence 9999999 999999999763 3456789999999874
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=3.1e-19 Score=167.95 Aligned_cols=139 Identities=19% Similarity=0.361 Sum_probs=125.3
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
...|.|.-||.++|+++|+.+|...|+|++|+|++++. +|++-||+||.|.++.+|+.|+ .|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi-----------------tGqSLGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI-----------------TGQSLGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc-----------------cccccccceeeecChHHHHHHHhhh
Confidence 45688999999999999999999999999999999874 3457799999999999999999 79
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
||-.+..+.|.|.++.|... ......|||.+||..+|..+|.++|++| |.|..-||+.|.-+|.+||
T Consensus 104 NGLrLQ~KTIKVSyARPSs~---------~Ik~aNLYvSGlPktMtqkelE~iFs~f----GrIItSRiL~dqvtg~srG 170 (360)
T KOG0145|consen 104 NGLRLQNKTIKVSYARPSSD---------SIKDANLYVSGLPKTMTQKELEQIFSPF----GRIITSRILVDQVTGLSRG 170 (360)
T ss_pred cceeeccceEEEEeccCChh---------hhcccceEEecCCccchHHHHHHHHHHh----hhhhhhhhhhhcccceecc
Confidence 99999999999999976533 2234589999999999999999999999 9999999999999999999
Q ss_pred EEEEEeeecC
Q 016231 384 IAYVLFKTRV 393 (393)
Q Consensus 384 faFVeF~t~~ 393 (393)
.|||.|+.++
T Consensus 171 VgFiRFDKr~ 180 (360)
T KOG0145|consen 171 VGFIRFDKRI 180 (360)
T ss_pred eeEEEecchh
Confidence 9999998653
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=1e-18 Score=182.39 Aligned_cols=147 Identities=23% Similarity=0.353 Sum_probs=121.3
Q ss_pred EEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCc
Q 016231 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMA 306 (393)
Q Consensus 228 VFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~ 306 (393)
|||.||+|++|.++|..+|..+|.|.+|.|...+... +...|+|||||+|.+.++|+.|+ .|+|+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~--------------~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPA--------------NKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccc--------------ccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999885533111 12348899999999999999999 69999
Q ss_pred eeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEE
Q 016231 307 VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (393)
Q Consensus 307 ~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaF 386 (393)
.|.|+.|.|.++.......-+...+.....+.|+|+|||+.++..+|+.+|..| |.|.+|||+.....+.++||||
T Consensus 584 vldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF----GqlksvRlPKK~~k~a~rGF~F 659 (725)
T KOG0110|consen 584 VLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF----GQLKSVRLPKKIGKGAHRGFGF 659 (725)
T ss_pred eecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc----cceeeeccchhhcchhhcccee
Confidence 999999999998722111111122223346799999999999999999999999 9999999998866778899999
Q ss_pred EEeeec
Q 016231 387 VLFKTR 392 (393)
Q Consensus 387 VeF~t~ 392 (393)
|+|-++
T Consensus 660 v~f~t~ 665 (725)
T KOG0110|consen 660 VDFLTP 665 (725)
T ss_pred eeccCc
Confidence 999764
No 22
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=1.4e-17 Score=163.69 Aligned_cols=145 Identities=21% Similarity=0.370 Sum_probs=127.0
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
..++||||+|+|.++++.|+.+|.+||.|..|.+++++.+ + .++||+||+|.+...+.++|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t--~---------------rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST--G---------------RSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC--C---------------CcccccceecCCCcchheeecc
Confidence 4789999999999999999999999999999999998743 2 3669999999999999999977
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
..+.|.|+.|.+..+.+......... ......|||++||.++++.+|++.|.+| |.|..+-++.|..+..++|
T Consensus 68 ~~h~~dgr~ve~k~av~r~~~~~~~~---~~~tkkiFvGG~~~~~~e~~~r~yfe~~----g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 68 RTHKLDGRSVEPKRAVSREDQTKVGR---HLRTKKIFVGGLPPDTTEEDFKDYFEQF----GKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred cccccCCccccceeccCccccccccc---ccceeEEEecCcCCCCchHHHhhhhhcc----ceeEeeEEeeccccccccc
Confidence 77889999999999987654332221 2256799999999999999999999999 8999999999999999999
Q ss_pred EEEEEeeec
Q 016231 384 IAYVLFKTR 392 (393)
Q Consensus 384 faFVeF~t~ 392 (393)
||||+|.++
T Consensus 141 Fgfv~~~~e 149 (311)
T KOG4205|consen 141 FGFVTFDSE 149 (311)
T ss_pred ceeeEeccc
Confidence 999999875
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.1e-17 Score=165.65 Aligned_cols=123 Identities=24% Similarity=0.430 Sum_probs=110.9
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
..|||| +++|+..|.++|+.+|+|.+|+++++. + +-|||||.|.++.+|..|| ++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-------------------slgy~yvnf~~~~da~~A~~~~n 58 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-------------------SLGYAYVNFQQPADAERALDTMN 58 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-------------------ccceEEEecCCHHHHHHHHHHcC
Confidence 369999 999999999999999999999998864 2 3489999999999999999 799
Q ss_pred CceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccE
Q 016231 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGf 384 (393)
...+.|++|+|.|+..-. ..|||.||+++++..+|.++|+.| |.|.+|++.++. .| ++||
T Consensus 59 ~~~~~~~~~rim~s~rd~--------------~~~~i~nl~~~~~~~~~~d~f~~~----g~ilS~kv~~~~-~g-~kg~ 118 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDP--------------SLVFIKNLDESIDNKSLYDTFSEF----GNILSCKVATDE-NG-SKGY 118 (369)
T ss_pred CcccCCcEEEeehhccCC--------------ceeeecCCCcccCcHHHHHHHHhh----cCeeEEEEEEcC-CC-ceee
Confidence 999999999999985321 229999999999999999999999 999999999995 45 9999
Q ss_pred EEEEeeec
Q 016231 385 AYVLFKTR 392 (393)
Q Consensus 385 aFVeF~t~ 392 (393)
||+|.++
T Consensus 119 -FV~f~~e 125 (369)
T KOG0123|consen 119 -FVQFESE 125 (369)
T ss_pred -EEEeCCH
Confidence 9999875
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.71 E-value=9.7e-17 Score=169.54 Aligned_cols=138 Identities=25% Similarity=0.366 Sum_probs=106.4
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~-I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
.++|||+|||+.+++++|.++|+.++. +..+.+...+ .+ .++++|||||+|.+.++|..|+ .
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~-~~---------------kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSA-AD---------------KKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccc-cc---------------cCccCceEEEEcCCHHHHHHHHHH
Confidence 588999999999999999999999864 4444332111 11 1247799999999999999999 5
Q ss_pred hcC--ceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC
Q 016231 303 FNM--AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (393)
Q Consensus 303 lng--~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~ 380 (393)
|+. ..+.|+.|.|.|+.+..... .......++|||+|||+++++++|+++|+.|.. |.|..|.++
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~--G~I~rV~~~------- 268 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKP--GKVERVKKI------- 268 (578)
T ss_pred hhccceEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCC--CceEEEEee-------
Confidence 543 46789999999987543211 112334579999999999999999999999832 789999875
Q ss_pred CccEEEEEeeec
Q 016231 381 GKGIAYVLFKTR 392 (393)
Q Consensus 381 ~kGfaFVeF~t~ 392 (393)
+|||||+|.++
T Consensus 269 -rgfAFVeF~s~ 279 (578)
T TIGR01648 269 -RDYAFVHFEDR 279 (578)
T ss_pred -cCeEEEEeCCH
Confidence 45999999874
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=4e-16 Score=160.78 Aligned_cols=143 Identities=19% Similarity=0.309 Sum_probs=111.3
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|| .|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~-----------------~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE-----------------TGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHHHHhc
Confidence 68999999999999999999999999999999977542 2246699999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCcccC--------------------------------CCC-----------------------
Q 016231 304 NMAVIGGNHIRLDRACPPRKKL--------------------------------KGE----------------------- 328 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~--------------------------------~~~----------------------- 328 (393)
||..|.|+.|.|.++....... ...
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999953210000 000
Q ss_pred -----CCC---------------------CcCCcceeeeCCCCCCCC----------HHHHHHHhhcCCCCCCCeEEEEE
Q 016231 329 -----DAP---------------------LYDIKKTVFVGNLPFDVK----------DEEIYQLFCGLNDLESSVEAVRV 372 (393)
Q Consensus 329 -----~~~---------------------~~~~~~tLfVgNLp~~~t----------eedL~e~F~~~~~~~G~I~~VrI 372 (393)
..+ ...+..+|+|.||....+ .+||++.|..| |.|..|.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~----G~v~~v~v 404 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY----GGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc----CCeeEEEE
Confidence 000 113457899999955544 36899999999 99999999
Q ss_pred eecCCCCCCccEEEEEeeec
Q 016231 373 IRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 373 ~~d~~tg~~kGfaFVeF~t~ 392 (393)
... ...|++||.|.+.
T Consensus 405 ~~~----~~~G~~fV~F~~~ 420 (457)
T TIGR01622 405 DTK----NSAGKIYLKFSSV 420 (457)
T ss_pred eCC----CCceeEEEEECCH
Confidence 643 3679999999874
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.2e-16 Score=150.55 Aligned_cols=146 Identities=26% Similarity=0.342 Sum_probs=118.9
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
...|||.+||..+|..+|..+|+.||.|..-||..+.. ++.++|.+||.|....+|+.|| .|
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv-----------------tg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV-----------------TGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc-----------------cceecceeEEEecchhHHHHHHHhc
Confidence 46799999999999999999999999998777755432 3457799999999999999999 69
Q ss_pred cCceeCC--eEEEEeecCCCcccCC-------------------------C-------------CCCCC-----------
Q 016231 304 NMAVIGG--NHIRLDRACPPRKKLK-------------------------G-------------EDAPL----------- 332 (393)
Q Consensus 304 ng~~~~G--r~I~V~~a~~~~~~~~-------------------------~-------------~~~~~----------- 332 (393)
||+.-.| -+|.|.++..|..... . ..+++
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~ 269 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGV 269 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeee
Confidence 9998877 5688888754421100 0 00000
Q ss_pred -----cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 -----YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 -----~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
.....+|||-||.+++++.-|+++|.+| |.|.+|.|++|..+++|+|||||...+
T Consensus 270 ~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF----GAv~nVKvirD~ttnkCKGfgFVtMtN 329 (360)
T KOG0145|consen 270 NLPGGPGGGWCIFVYNLSPDADESILWQLFGPF----GAVTNVKVIRDFTTNKCKGFGFVTMTN 329 (360)
T ss_pred ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc----cceeeEEEEecCCcccccceeEEEecc
Confidence 1124789999999999999999999999 999999999999999999999999754
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=8.7e-17 Score=153.57 Aligned_cols=116 Identities=19% Similarity=0.376 Sum_probs=106.3
Q ss_pred EEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-hcC
Q 016231 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (393)
Q Consensus 227 tVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~-lng 305 (393)
.|||||||..+++.+|+.+|.+||.|.+|.|+. -||||...+...+..||. |||
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------------------------NYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------------------------NYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-------------------------ccceEEeecccccHHHHhhccc
Confidence 599999999999999999999999999999943 399999999999999994 999
Q ss_pred ceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEE
Q 016231 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (393)
Q Consensus 306 ~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfa 385 (393)
..|+|..|.|..+... ...+.+|+||||.+.++.++|+..|+.| |.|..|.|++| |+
T Consensus 59 YtLhg~nInVeaSksK-----------sk~stkl~vgNis~tctn~ElRa~fe~y----gpviecdivkd--------y~ 115 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSK-----------SKASTKLHVGNISPTCTNQELRAKFEKY----GPVIECDIVKD--------YA 115 (346)
T ss_pred ceecceEEEEEecccc-----------CCCccccccCCCCccccCHHHhhhhccc----CCceeeeeecc--------ee
Confidence 9999999999998654 2356899999999999999999999999 99999999866 89
Q ss_pred EEEee
Q 016231 386 YVLFK 390 (393)
Q Consensus 386 FVeF~ 390 (393)
||.|.
T Consensus 116 fvh~d 120 (346)
T KOG0109|consen 116 FVHFD 120 (346)
T ss_pred EEEEe
Confidence 99996
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.68 E-value=1.3e-17 Score=170.40 Aligned_cols=152 Identities=20% Similarity=0.327 Sum_probs=126.6
Q ss_pred cCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
.+++..+|||+-.|+..++.-+|.+||+.+|.|..|+|+++.+ + +.++|.|||+|.+.+++..
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~--s---------------~rskgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN--S---------------RRSKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc--c---------------hhhcceeEEEEecccchhh
Confidence 3456689999999999999999999999999999999988763 2 2366999999999999999
Q ss_pred HHHhcCceeCCeEEEEeecCCCcccCCCC----C-CCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEee
Q 016231 300 ALAFNMAVIGGNHIRLDRACPPRKKLKGE----D-APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (393)
Q Consensus 300 Al~lng~~~~Gr~I~V~~a~~~~~~~~~~----~-~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~ 374 (393)
||.|.|+.+.|.+|.|+............ . .....+-..||||||++++++++|+.+|++| |.|..|.++.
T Consensus 237 aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf----g~Ie~v~l~~ 312 (549)
T KOG0147|consen 237 AIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF----GKIENVQLTK 312 (549)
T ss_pred HhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCc----ccceeeeecc
Confidence 99999999999999999875432221110 0 1112233449999999999999999999999 9999999999
Q ss_pred cCCCCCCccEEEEEeeec
Q 016231 375 HPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 375 d~~tg~~kGfaFVeF~t~ 392 (393)
|..||.++|||||+|.+.
T Consensus 313 d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 313 DSETGRSKGFGFITFVNK 330 (549)
T ss_pred ccccccccCcceEEEecH
Confidence 988999999999999763
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=4.5e-16 Score=155.70 Aligned_cols=138 Identities=26% Similarity=0.385 Sum_probs=111.3
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~-I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
...+.|||||||.+.++++|.+.|.+.++ |+.|.+...+. +..+|||||||+|.+...|..|-
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~----------------dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPD----------------DKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcc----------------ccccccceEEEEeecchhHHHHH
Confidence 34688999999999999999999999875 56666644331 12358899999999999988887
Q ss_pred -H-hcCc-eeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC
Q 016231 302 -A-FNMA-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (393)
Q Consensus 302 -~-lng~-~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t 378 (393)
+ +++. .+.|+.|.|.||.+.... +...+.....|||+||+.++|++.|..+|+.| |.|+.|..++|
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~----ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rD--- 294 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEP----DEDTMSKVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRD--- 294 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCC----ChhhhhheeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccc---
Confidence 3 4544 689999999999765321 11134456899999999999999999999999 99999999877
Q ss_pred CCCccEEEEEeeec
Q 016231 379 RVGKGIAYVLFKTR 392 (393)
Q Consensus 379 g~~kGfaFVeF~t~ 392 (393)
||||.|.+|
T Consensus 295 -----YaFVHf~eR 303 (506)
T KOG0117|consen 295 -----YAFVHFAER 303 (506)
T ss_pred -----eeEEeecch
Confidence 999999876
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.4e-16 Score=156.63 Aligned_cols=138 Identities=26% Similarity=0.405 Sum_probs=119.1
Q ss_pred EEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCc
Q 016231 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMA 306 (393)
Q Consensus 228 VFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~ 306 (393)
|||.||+..++-.+|..+|+.||.|.+|++.++.. + ++|| ||+|.+++.|..|+ .+||.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~---g----------------~kg~-FV~f~~e~~a~~ai~~~ng~ 138 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN---G----------------SKGY-FVQFESEESAKKAIEKLNGM 138 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC---C----------------ceee-EEEeCCHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999987651 1 5689 99999999999999 79999
Q ss_pred eeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEE
Q 016231 307 VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (393)
Q Consensus 307 ~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaF 386 (393)
.+.|+.|.|............... ....-..+||.|++.+++++.|..+|..+ |.|.++.++.+. .|.++||||
T Consensus 139 ll~~kki~vg~~~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~----g~i~s~~v~~~~-~g~~~~~gf 212 (369)
T KOG0123|consen 139 LLNGKKIYVGLFERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAY----GSITSVAVMRDS-IGKSKGFGF 212 (369)
T ss_pred ccCCCeeEEeeccchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhccc----CcceEEEEeecC-CCCCCCccc
Confidence 999999999988764433222212 23345689999999999999999999999 999999999995 677999999
Q ss_pred EEeee
Q 016231 387 VLFKT 391 (393)
Q Consensus 387 VeF~t 391 (393)
|.|.+
T Consensus 213 v~f~~ 217 (369)
T KOG0123|consen 213 VNFEN 217 (369)
T ss_pred eeecC
Confidence 99976
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=9.3e-15 Score=132.06 Aligned_cols=138 Identities=22% Similarity=0.343 Sum_probs=110.8
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
+..++|||||||.++.+.+|..+|.+||.|..|.|...+ +.+ +||||+|.++.+|+.||
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~----g~p----------------pfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP----GPP----------------PFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC----CCC----------------CeeEEEecCccchhhhhh
Confidence 457899999999999999999999999999999883322 222 59999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcccCCC-----------------CCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLKG-----------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~~-----------------~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~ 364 (393)
.-+|..+.|..|+|.++..-...... ...+.......|.|.+||++.+++||++++...
T Consensus 64 gRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea---- 139 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA---- 139 (241)
T ss_pred cccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh----
Confidence 69999999999999998543211100 002223345789999999999999999999997
Q ss_pred CCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 365 SSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 365 G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
|.|-...+.+| |+|.|+|..
T Consensus 140 GdvCfadv~rD-------g~GvV~~~r 159 (241)
T KOG0105|consen 140 GDVCFADVQRD-------GVGVVEYLR 159 (241)
T ss_pred CCeeeeeeecc-------cceeeeeee
Confidence 99998898887 367888854
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.6e-14 Score=128.02 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=72.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+++|..||.|.+|.|+.++. +++++|||||+|.+.++|+.||
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~kGfaFV~F~~~e~A~~Al~ 94 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE-----------------TGRSRGFGFVNFNDEGAATAAIS 94 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHH
Confidence 3467899999999999999999999999999999977652 2346799999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++...
T Consensus 95 ~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 95 EMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred HcCCCEECCEEEEEEeCCcC
Confidence 69999999999999998654
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.54 E-value=6.1e-14 Score=130.35 Aligned_cols=140 Identities=26% Similarity=0.383 Sum_probs=112.4
Q ss_pred cccEEEEeCCCccCCHHHHHH----HhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIK----EFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~----~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
+..||||.||+..+..++|+. +|++||.|..|.... +.+.||-|||.|.+.+.|-.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--------------------t~KmRGQA~VvFk~~~~As~ 67 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--------------------TPKMRGQAFVVFKETEAASA 67 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--------------------CCCccCceEEEecChhHHHH
Confidence 456999999999999998888 999999999887632 22377999999999999999
Q ss_pred HH-HhcCceeCCeEEEEeecCCCcccCC------------------------CCC-----------------CCCcCCcc
Q 016231 300 AL-AFNMAVIGGNHIRLDRACPPRKKLK------------------------GED-----------------APLYDIKK 337 (393)
Q Consensus 300 Al-~lng~~~~Gr~I~V~~a~~~~~~~~------------------------~~~-----------------~~~~~~~~ 337 (393)
|+ .|+|..|.|+.++|++|+....-.. .+. .....+..
T Consensus 68 A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ 147 (221)
T KOG4206|consen 68 ALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNN 147 (221)
T ss_pred HHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCce
Confidence 99 7999999999999999864311000 000 11245668
Q ss_pred eeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 338 tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.||+.|||..++.+.|..+|++| +--..||++.. -.|+|||+|.++
T Consensus 148 ilf~~niP~es~~e~l~~lf~qf----~g~keir~i~~-----~~~iAfve~~~d 193 (221)
T KOG4206|consen 148 ILFLTNIPSESESEMLSDLFEQF----PGFKEIRLIPP-----RSGIAFVEFLSD 193 (221)
T ss_pred EEEEecCCcchhHHHHHHHHhhC----cccceeEeccC-----CCceeEEecchh
Confidence 99999999999999999999999 45678888765 367999999875
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=126.97 Aligned_cols=141 Identities=30% Similarity=0.512 Sum_probs=110.8
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.++|||+|||+.+|+++|..+|..||.|..|.+..+. . .+.++|||||.|.+.++|..|+ .+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~--~---------------~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR--E---------------TGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc--c---------------cCccCceEEEEecCHHHHHHHHHHc
Confidence 6999999999999999999999999999999997654 2 2346799999999999999999 69
Q ss_pred cCceeCCeEEEEeecCC---CcccCC------------CCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeE
Q 016231 304 NMAVIGGNHIRLDRACP---PRKKLK------------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE 368 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~---~~~~~~------------~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~ 368 (393)
++..|.|+.|.|.++.. +..... ............++++|++..++..++..+|..+ |.+.
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 253 (306)
T COG0724 178 NGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR----GDIV 253 (306)
T ss_pred CCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc----ccce
Confidence 99999999999999642 111111 0011224456789999999999999999999998 8887
Q ss_pred EEEEeecCCCCCCccEEE
Q 016231 369 AVRVIRHPHMRVGKGIAY 386 (393)
Q Consensus 369 ~VrI~~d~~tg~~kGfaF 386 (393)
.+.+...........+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 254 RASLPPSKDGKIPKSRSF 271 (306)
T ss_pred eeeccCCCCCcccccccc
Confidence 777766654443444444
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=2.2e-13 Score=103.39 Aligned_cols=69 Identities=35% Similarity=0.598 Sum_probs=61.9
Q ss_pred EEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCc
Q 016231 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMA 306 (393)
Q Consensus 228 VFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~ 306 (393)
|||+|||+++|+++|+.+|+.||.|..+.++... . +.++|||||+|.+.++|..|+ .+|+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~---~---------------~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS---S---------------GKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET---T---------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc---c---------------ccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999986641 1 235699999999999999999 59999
Q ss_pred eeCCeEEE
Q 016231 307 VIGGNHIR 314 (393)
Q Consensus 307 ~~~Gr~I~ 314 (393)
.|.|+.|+
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 99999985
No 36
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=3.5e-13 Score=137.44 Aligned_cols=153 Identities=25% Similarity=0.392 Sum_probs=112.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..-++.||||+||++++|+.|...|..||.+. |.++.........+.+| +.||+|+.|.++.++..-|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkG-----------s~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKG-----------SYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCC-----------cccEEEEEecchHHHHHHH
Confidence 45678999999999999999999999999876 77754322222333322 4469999999999988766
Q ss_pred HhcCceeCCeEEEEeecCCCcccCC--------------CCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCe
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLK--------------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~--------------~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I 367 (393)
.-.- +....+.++.+.+..+... -+.....++.+|||||+||..++.++|..+|... ||.|
T Consensus 324 ~aC~--~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l---yGgV 398 (520)
T KOG0129|consen 324 SACS--EGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL---FGGV 398 (520)
T ss_pred HHHh--hcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh---cCce
Confidence 2111 1233333333322211110 0123457789999999999999999999999965 5999
Q ss_pred EEEEEeecCCCCCCccEEEEEeee
Q 016231 368 EAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 368 ~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..+-|-+|+.-+.++|-|-|+|.+
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecc
Confidence 999999999999999999999976
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=7.9e-14 Score=132.35 Aligned_cols=110 Identities=25% Similarity=0.433 Sum_probs=90.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
..||||||||+.++||+-|..||++.|.|.+++|+.+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------------------- 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------------------- 41 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------------
Confidence 4699999999999999999999999999998887331
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
.|.|.+++.+..+.+.. ....--|||+.|...++-++|++.|..| |+|..++|++|+.|++++|
T Consensus 42 --------e~~v~wa~~p~nQsk~t----~~~hfhvfvgdls~eI~~e~lr~aF~pF----GevS~akvirD~~T~KsKG 105 (321)
T KOG0148|consen 42 --------ELKVNWATAPGNQSKPT----SNQHFHVFVGDLSPEIDNEKLREAFAPF----GEVSDAKVIRDMNTGKSKG 105 (321)
T ss_pred --------hhccccccCcccCCCCc----cccceeEEehhcchhcchHHHHHHhccc----cccccceEeecccCCcccc
Confidence 45566666552222111 1124569999999999999999999999 9999999999999999999
Q ss_pred EEEEEeeec
Q 016231 384 IAYVLFKTR 392 (393)
Q Consensus 384 faFVeF~t~ 392 (393)
||||.|-++
T Consensus 106 YgFVSf~~k 114 (321)
T KOG0148|consen 106 YGFVSFPNK 114 (321)
T ss_pred eeEEeccch
Confidence 999999654
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.46 E-value=9.2e-13 Score=133.66 Aligned_cols=143 Identities=23% Similarity=0.325 Sum_probs=110.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
..-|-+++|||.+|+++|..||+.|+ |.++.+.+. ++ +.+|-|||+|.+.++++.||+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~----~G---------------r~sGeA~Ve~~seedv~~Alkkd 69 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR----NG---------------RPSGEAYVEFTSEEDVEKALKKD 69 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc----CC---------------CcCcceEEEeechHHHHHHHHhh
Confidence 45688999999999999999999998 677766442 23 35589999999999999999999
Q ss_pred CceeCCeEEEEeecCCCcccC--CCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE-EEEeecCCCCCC
Q 016231 305 MAVIGGNHIRLDRACPPRKKL--KGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVG 381 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~--~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~-VrI~~d~~tg~~ 381 (393)
...+..|.|.|-.+....... +........+...|-+++||+.||++||.++|+... .|.. |.++.+ ..+++
T Consensus 70 R~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~----Iv~~gi~l~~d-~rgR~ 144 (510)
T KOG4211|consen 70 RESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLE----IVPDGILLPMD-QRGRP 144 (510)
T ss_pred HHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCc----ccccceeeecc-CCCCc
Confidence 999999999998875432211 111111113456899999999999999999999972 2333 456666 46889
Q ss_pred ccEEEEEeeec
Q 016231 382 KGIAYVLFKTR 392 (393)
Q Consensus 382 kGfaFVeF~t~ 392 (393)
.|-|||+|.+.
T Consensus 145 tGEAfVqF~sq 155 (510)
T KOG4211|consen 145 TGEAFVQFESQ 155 (510)
T ss_pred ccceEEEecCH
Confidence 99999999874
No 39
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=2.7e-13 Score=129.78 Aligned_cols=76 Identities=30% Similarity=0.383 Sum_probs=69.4
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.++|||+|||+.+|+++|++||+.||.|.+|+|+++.. ++|||||+|.+.++|..||.||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~AllLn 63 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALLLS 63 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHHhc
Confidence 57999999999999999999999999999999966431 3489999999999999999999
Q ss_pred CceeCCeEEEEeecCC
Q 016231 305 MAVIGGNHIRLDRACP 320 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~ 320 (393)
|..|.|+.|.|.++..
T Consensus 64 G~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 64 GATIVDQSVTITPAED 79 (260)
T ss_pred CCeeCCceEEEEeccC
Confidence 9999999999999853
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.4e-13 Score=135.89 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=67.2
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.+.||||-|+..+||.+|+++|++||.|++|+|++++. +.+||||||.|.+.+.|..|| .|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------------------~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------------------GLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccc------------------ccccceeEEEEehHHHHHHHHHhh
Confidence 57899999999999999999999999999999988762 357899999999999999999 69
Q ss_pred cCc-eeCC--eEEEEeec
Q 016231 304 NMA-VIGG--NHIRLDRA 318 (393)
Q Consensus 304 ng~-~~~G--r~I~V~~a 318 (393)
||. .+.| .+|.|.|+
T Consensus 186 ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred ccceeeccCCCceEEEec
Confidence 986 5655 56888877
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=7.9e-13 Score=125.43 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=64.4
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..+.||||-|...-.|++++.+|..||.|.+|.+.+-+ ++.++|||||.|.+.-+|+.|| .
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~------------------dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP------------------DGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC------------------CCCCCCceEEEeccchHHHHHHHH
Confidence 45889999999999999999999999999999986654 3457799999999999999999 7
Q ss_pred hcCc-eeCC--eEEEEeec
Q 016231 303 FNMA-VIGG--NHIRLDRA 318 (393)
Q Consensus 303 lng~-~~~G--r~I~V~~a 318 (393)
|||. .+.| ..|.|.++
T Consensus 80 LHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred hcccccCCCCccceEEEec
Confidence 8876 4444 44666654
No 42
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.7e-13 Score=116.11 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=69.4
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
+.++|||||||++.++|++|+++|+.||+|..|.|=.+.+ +.+.+|||||+|.+.++|..||.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------------kktpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------------KKTPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------------CcCccceEEEEEecchhHHHHHH
Confidence 3489999999999999999999999999999887633221 23467999999999999999995
Q ss_pred -hcCceeCCeEEEEeecC
Q 016231 303 -FNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 303 -lng~~~~Gr~I~V~~a~ 319 (393)
++++.+..+.|+|+|..
T Consensus 97 yisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 97 YISGTRLDDRPIRIDWDA 114 (153)
T ss_pred HhccCcccccceeeeccc
Confidence 99999999999999974
No 43
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=3.4e-12 Score=97.93 Aligned_cols=69 Identities=29% Similarity=0.536 Sum_probs=58.3
Q ss_pred EEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-hcCc
Q 016231 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (393)
Q Consensus 228 VFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~-lng~ 306 (393)
|||+|||+++++++|..+|+.||.|..|++.... + +..+|+|||+|.+.++|..|+. +++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~--~----------------~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK--D----------------GQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST--T----------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee--c----------------cccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 7999999999999999999999999999996542 1 2356999999999999999995 6669
Q ss_pred eeCCeEEE
Q 016231 307 VIGGNHIR 314 (393)
Q Consensus 307 ~~~Gr~I~ 314 (393)
.|.|+.|+
T Consensus 63 ~~~g~~l~ 70 (70)
T PF14259_consen 63 EIDGRKLR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECCEEcC
Confidence 99999885
No 44
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=6.2e-12 Score=118.98 Aligned_cols=76 Identities=26% Similarity=0.264 Sum_probs=68.9
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
..||||+||++.+|+++|++||+.||.|.+|+|+++. ...|||||+|.++++++.||.|+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--------------------et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--------------------EYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--------------------CcceEEEEEECCHHHHHHHHhcC
Confidence 5799999999999999999999999999999997642 13479999999999999999999
Q ss_pred CceeCCeEEEEeecCC
Q 016231 305 MAVIGGNHIRLDRACP 320 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~ 320 (393)
|..|.++.|.|.....
T Consensus 65 Ga~l~d~~I~It~~~~ 80 (243)
T PLN03121 65 GATIVDQRVCITRWGQ 80 (243)
T ss_pred CCeeCCceEEEEeCcc
Confidence 9999999999988653
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.31 E-value=1.7e-11 Score=122.93 Aligned_cols=146 Identities=21% Similarity=0.320 Sum_probs=115.8
Q ss_pred ccEEEEeCCCccCCHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs-~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
.|.|||.||||++...+|+.+|. ..|+|.-|.|..+. ++ +.+|||.|+|.+++.+++|+ .
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~---~G---------------K~rGcavVEFk~~E~~qKa~E~ 105 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE---SG---------------KARGCAVVEFKDPENVQKALEK 105 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc---CC---------------CcCCceEEEeeCHHHHHHHHHH
Confidence 57799999999999999999998 58999999986653 33 46699999999999999999 6
Q ss_pred hcCceeCCeEEEEeecCCCcccC-----------------------------------------CCCCCC----------
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKL-----------------------------------------KGEDAP---------- 331 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~-----------------------------------------~~~~~~---------- 331 (393)
||...+.||+|.|.-....+..+ ..++..
T Consensus 106 lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~ 185 (608)
T KOG4212|consen 106 LNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMS 185 (608)
T ss_pred hhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccc
Confidence 99999999999997542100000 000000
Q ss_pred -------------------------CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEE
Q 016231 332 -------------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (393)
Q Consensus 332 -------------------------~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaF 386 (393)
..+....+||.||.+.+....|.+.|.-. |.|++|.+-.|. -|.++|||.
T Consensus 186 ~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA----Gkv~~vdf~idK-eG~s~G~~v 260 (608)
T KOG4212|consen 186 NDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA----GKVQSVDFSIDK-EGNSRGFAV 260 (608)
T ss_pred cccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccc----eeeeeeceeecc-ccccCCeeE
Confidence 01123679999999999999999999876 999999999995 579999999
Q ss_pred EEeeecC
Q 016231 387 VLFKTRV 393 (393)
Q Consensus 387 VeF~t~~ 393 (393)
++|..+|
T Consensus 261 i~y~hpv 267 (608)
T KOG4212|consen 261 IEYDHPV 267 (608)
T ss_pred EEecchH
Confidence 9998764
No 46
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.6e-12 Score=113.82 Aligned_cols=76 Identities=26% Similarity=0.454 Sum_probs=69.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.+.||||||+..+++.+|...|..||+|.+|+|-+.| -|||||+|.+..+|+.|+ .|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----------------------PGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----------------------PGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----------------------CCceEEeccCcccHHHHHhhc
Confidence 6889999999999999999999999999999996644 189999999999999999 79
Q ss_pred cCceeCCeEEEEeecCCCc
Q 016231 304 NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~ 322 (393)
+|..|.|..|.|.++....
T Consensus 68 DG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCccccCceEEEEeecCCc
Confidence 9999999999999987543
No 47
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=5.2e-12 Score=118.13 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=68.9
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
-.+||||||+|.+..+.|+.+|.+||+|++..+++|.. + ++|+||+||+|.+.++|..|++--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~--t---------------~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN--T---------------GRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC--C---------------ccccceeeEEeecHHHHHHHhcCC
Confidence 46799999999999999999999999999999988652 2 347799999999999999999766
Q ss_pred CceeCCeEEEEeecC
Q 016231 305 MAVIGGNHIRLDRAC 319 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~ 319 (393)
.-.|+||+..|..+.
T Consensus 75 ~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 75 NPIIDGRKANCNLAS 89 (247)
T ss_pred CCcccccccccchhh
Confidence 678999999998875
No 48
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.28 E-value=1.3e-11 Score=131.27 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=71.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++++++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..|| .
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~--t---------------gksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT--G---------------RGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC--C---------------CCcCCeEEEEECCHHHHHHHHHH
Confidence 457899999999999999999999999999999977652 2 236699999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCC
Q 016231 303 FNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~ 320 (393)
||+..|+|+.|+|.++..
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999999999999999864
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=1.5e-11 Score=124.69 Aligned_cols=75 Identities=28% Similarity=0.412 Sum_probs=67.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCH--HHHHHHH-
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE--QSTEAAL- 301 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~--e~A~~Al- 301 (393)
..+||||||++.+++++|+.+|+.||.|.+|.|++. ++ ||||||+|.+. .++..||
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE----TG-----------------RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT----KG-----------------RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc----cC-----------------CceEEEEecCCcHHHHHHHHH
Confidence 578999999999999999999999999999999642 22 48999999987 6788999
Q ss_pred HhcCceeCCeEEEEeecCC
Q 016231 302 AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~ 320 (393)
.|||..|.|+.|+|..|.+
T Consensus 69 aLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 69 TYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HhcCCeecCceeEEeeccH
Confidence 7999999999999999965
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.26 E-value=7.3e-11 Score=109.75 Aligned_cols=148 Identities=24% Similarity=0.341 Sum_probs=103.4
Q ss_pred cCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
++...-|||||.+||.++..-+|..+|..|-.-+.+.|.... .+. .-.+-+|||.|.+.+.|.+
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Ts---k~~-------------~~~~pvaFatF~s~q~A~a 92 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTS---KGD-------------QVCKPVAFATFTSHQFALA 92 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeecc---CCC-------------ccccceEEEEecchHHHHH
Confidence 334457999999999999999999999998766666664322 110 1123599999999999999
Q ss_pred HH-HhcCceeC---CeEEEEeecCCCcccC--CC---------------------------C---CC-------------
Q 016231 300 AL-AFNMAVIG---GNHIRLDRACPPRKKL--KG---------------------------E---DA------------- 330 (393)
Q Consensus 300 Al-~lng~~~~---Gr~I~V~~a~~~~~~~--~~---------------------------~---~~------------- 330 (393)
|+ .|||..|+ +..|++..+....+.. +. + ..
T Consensus 93 amnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al 172 (284)
T KOG1457|consen 93 AMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADAL 172 (284)
T ss_pred HHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccC
Confidence 99 79999985 6888888774321100 00 0 00
Q ss_pred --------------------------------CCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC
Q 016231 331 --------------------------------PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (393)
Q Consensus 331 --------------------------------~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t 378 (393)
.....+.||||.||..++++++|+.+|..|.. ...++|... .
T Consensus 173 ~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g----f~~l~~~~~--~ 246 (284)
T KOG1457|consen 173 KENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG----FHILKIRAR--G 246 (284)
T ss_pred CCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC----ceEEEEecC--C
Confidence 00112468999999999999999999999942 344454221 2
Q ss_pred CCCccEEEEEeee
Q 016231 379 RVGKGIAYVLFKT 391 (393)
Q Consensus 379 g~~kGfaFVeF~t 391 (393)
.-..|||+|.+
T Consensus 247 --g~~vaf~~~~~ 257 (284)
T KOG1457|consen 247 --GMPVAFADFEE 257 (284)
T ss_pred --CcceEeecHHH
Confidence 34589999964
No 51
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=4.7e-11 Score=89.12 Aligned_cols=71 Identities=39% Similarity=0.655 Sum_probs=62.5
Q ss_pred EEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcC
Q 016231 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (393)
Q Consensus 227 tVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng 305 (393)
+|||+|||..++.++|+.+|..||.|..+.+...+ + .++|+|||+|.+.+.|..|+ .+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~----~---------------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT----G---------------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----C---------------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 59999999999999999999999999999885532 1 25589999999999999999 6899
Q ss_pred ceeCCeEEEEe
Q 016231 306 AVIGGNHIRLD 316 (393)
Q Consensus 306 ~~~~Gr~I~V~ 316 (393)
..+.|+.|.|.
T Consensus 62 ~~~~~~~i~v~ 72 (72)
T smart00362 62 TKLGGRPLRVE 72 (72)
T ss_pred cEECCEEEeeC
Confidence 99999998873
No 52
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=117.02 Aligned_cols=79 Identities=27% Similarity=0.400 Sum_probs=71.6
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
+-+||||+-|+++++|..|+..|+.||+|..|+|+++.. + ++++|||||+|.++.++..|. .
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v--T---------------gkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV--T---------------GKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc--c---------------CCccceEEEEeccHHHHHHHHHh
Confidence 479999999999999999999999999999999988753 2 346699999999999999999 6
Q ss_pred hcCceeCCeEEEEeecC
Q 016231 303 FNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~ 319 (393)
.+|..|+|+.|.|+.-.
T Consensus 163 adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVER 179 (335)
T ss_pred ccCceecCcEEEEEecc
Confidence 89999999999998763
No 53
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.6e-12 Score=117.29 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=72.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
+.+.-|||||||+..||-+|...|++||+|+.|.|+++. . +|+|+||||+.|.+..+...|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk--~---------------TGKSKGFaFLcYEDQRSTILAVD 95 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK--K---------------TGKSKGFAFLCYEDQRSTILAVD 95 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC--C---------------CCcccceEEEEecCccceEEEEe
Confidence 346889999999999999999999999999999998876 2 3457799999999999998898
Q ss_pred HhcCceeCCeEEEEeecCC
Q 016231 302 AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~ 320 (393)
.|||..|.||.|+|+....
T Consensus 96 N~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 96 NLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ccCCceecceeEEeeeccc
Confidence 7999999999999998754
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.23 E-value=4.2e-11 Score=120.35 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=69.4
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+|||+|||+.+|+++|+++|+.||.|..|+|+++.. + ++++|||||+|.+.++|+.|| .|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~--t---------------g~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL--T---------------GTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC--C---------------CccceEEEEEECCHHHHHHHHHHh
Confidence 56899999999999999999999999999999976542 2 335699999999999999999 69
Q ss_pred cCceeCC--eEEEEeecCCC
Q 016231 304 NMAVIGG--NHIRLDRACPP 321 (393)
Q Consensus 304 ng~~~~G--r~I~V~~a~~~ 321 (393)
|+..|.| +.|.|.++...
T Consensus 256 ng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCccCCCceeEEEEECCcc
Confidence 9998876 78999988643
No 55
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.5e-11 Score=113.58 Aligned_cols=130 Identities=18% Similarity=0.386 Sum_probs=104.3
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
..||||+||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|.-|+ .+|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~ 56 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLD 56 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhc
Confidence 359999999999999999999999999988871 279999999999999999 899
Q ss_pred CceeCCeEEEEeecCCCcccC----CCC----C---CCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEe
Q 016231 305 MAVIGGNHIRLDRACPPRKKL----KGE----D---APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVI 373 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~----~~~----~---~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~ 373 (393)
+..|.|-.+.|.++...+..+ .++ . .........|+|.|++..+.+.+|.++|+.+ |.++...+
T Consensus 57 ~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~----g~~~~~~~- 131 (216)
T KOG0106|consen 57 GKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA----GEVTYVDA- 131 (216)
T ss_pred CceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc----CCCchhhh-
Confidence 999999889998886432111 000 0 1112234678999999999999999999999 88865544
Q ss_pred ecCCCCCCccEEEEEeeec
Q 016231 374 RHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 374 ~d~~tg~~kGfaFVeF~t~ 392 (393)
.+++|||+|.++
T Consensus 132 -------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 132 -------RRNFAFVEFSEQ 143 (216)
T ss_pred -------hccccceeehhh
Confidence 467999999864
No 56
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.16 E-value=3.5e-11 Score=110.74 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=71.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
-.+|-|-||.+.|+.++|+.+|.+||.|-.|.|+++++ +.+++|||||.|....+|+.|| +|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~-----------------Tr~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY-----------------TRQSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccc-----------------cccccceeEEEeeecchHHHHHHhh
Confidence 46799999999999999999999999999999988874 2357799999999999999999 79
Q ss_pred cCceeCCeEEEEeecC
Q 016231 304 NMAVIGGNHIRLDRAC 319 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~ 319 (393)
+|.+|+|+.|.|++|.
T Consensus 76 DG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 76 DGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeeccceeeehhhh
Confidence 9999999999999984
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.4e-10 Score=109.04 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=73.1
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|-|.|||.++++.+|.++|..||.|..|.|.++. .++ .++|||||.|.+.++|.+|| .
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK--~TG---------------~~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK--ETG---------------LSKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcc--ccC---------------cccceEEEEEecHHHHHHHHHH
Confidence 46889999999999999999999999999999998765 344 46699999999999999999 6
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
|||.-++.--|+|.|+.|.
T Consensus 251 LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ccCcccceEEEEEEecCCC
Confidence 9999999999999999763
No 58
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=3.4e-10 Score=84.83 Aligned_cols=73 Identities=38% Similarity=0.601 Sum_probs=63.9
Q ss_pred EEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcC
Q 016231 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (393)
Q Consensus 227 tVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng 305 (393)
+|||+|||+.+++++|+.+|..||.|..+.+...+.. ..+|+|||+|.+.++|..|+ .+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 4899999999999999999999999999998664421 24589999999999999999 6999
Q ss_pred ceeCCeEEEEee
Q 016231 306 AVIGGNHIRLDR 317 (393)
Q Consensus 306 ~~~~Gr~I~V~~ 317 (393)
..+.|+.|.|.+
T Consensus 63 ~~~~~~~~~v~~ 74 (74)
T cd00590 63 KELGGRPLRVEF 74 (74)
T ss_pred CeECCeEEEEeC
Confidence 999999998863
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=6.8e-11 Score=115.08 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=70.1
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.+.|+|.||||...+.||+.+|.+||.|.+|.|+.+. .. |+||+||+|.+.++|+.|- +|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE----RG---------------SKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE----RG---------------SKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc----CC---------------CCccceEEecChhhHHHHHHHh
Confidence 4789999999999999999999999999999996532 22 6699999999999999999 79
Q ss_pred cCceeCCeEEEEeecCCC
Q 016231 304 NMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~ 321 (393)
||+.+.||+|.|..+...
T Consensus 157 Hgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 157 HGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hcceeeceEEEEeccchh
Confidence 999999999999998653
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=94.18 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=68.7
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.+.|||+|||+++|.+++.++|..||.|..|||=.. ...+|-|||.|.+..+|..|+ .|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--------------------k~TrGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--------------------KETRGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc--------------------cCcCceEEEEehHhhhHHHHHHHh
Confidence 688999999999999999999999999999998211 125699999999999999999 79
Q ss_pred cCceeCCeEEEEeecCCC
Q 016231 304 NMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~ 321 (393)
+|.-+.++.+.|.+..+.
T Consensus 78 sg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 78 SGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred cccccCCceEEEEecCHH
Confidence 999999999999988654
No 61
>smart00360 RRM RNA recognition motif.
Probab=99.10 E-value=3.8e-10 Score=83.71 Aligned_cols=70 Identities=36% Similarity=0.544 Sum_probs=60.6
Q ss_pred EeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCcee
Q 016231 230 VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVI 308 (393)
Q Consensus 230 VgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~ 308 (393)
|+|||..+++++|+.+|..||.|..+.+...+. .+.++|||||+|.+.++|..|+ .+++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~-----------------~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD-----------------TGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC-----------------CCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 689999999999999999999999998865431 1236699999999999999999 6899999
Q ss_pred CCeEEEEe
Q 016231 309 GGNHIRLD 316 (393)
Q Consensus 309 ~Gr~I~V~ 316 (393)
.|+.|.|.
T Consensus 64 ~~~~~~v~ 71 (71)
T smart00360 64 DGRPLKVK 71 (71)
T ss_pred CCcEEEeC
Confidence 99998873
No 62
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.08 E-value=2.2e-10 Score=101.58 Aligned_cols=56 Identities=20% Similarity=0.416 Sum_probs=52.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....++|||+|||+.+++++|+++|..| |.|..|+|+.|+.++.++|||||+|.++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kGfaFV~F~~~ 86 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETGRSRGFGFVNFNDE 86 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcceEEEEEECCH
Confidence 3456799999999999999999999999 9999999999999999999999999874
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=4.8e-10 Score=118.19 Aligned_cols=146 Identities=25% Similarity=0.385 Sum_probs=109.4
Q ss_pred cCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
...+....|+|+|||..+..++|..+|..||+|..|.|+ + .+ -.|+|+|.++.+|..
T Consensus 380 ~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~---~G------------------~~aiv~fl~p~eAr~ 436 (725)
T KOG0110|consen 380 QAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P---GG------------------TGAIVEFLNPLEARK 436 (725)
T ss_pred hhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c---cc------------------ceeeeeecCccchHH
Confidence 355666889999999999999999999999999988552 2 11 159999999999999
Q ss_pred HH-HhcCceeCCeEEEEeecCCCccc-------C-------------------CC---CC------CCC------cCCcc
Q 016231 300 AL-AFNMAVIGGNHIRLDRACPPRKK-------L-------------------KG---ED------APL------YDIKK 337 (393)
Q Consensus 300 Al-~lng~~~~Gr~I~V~~a~~~~~~-------~-------------------~~---~~------~~~------~~~~~ 337 (393)
|+ .|..+.+...++.+.|+...... . .+ .+ .+. .....
T Consensus 437 Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t 516 (725)
T KOG0110|consen 437 AFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETET 516 (725)
T ss_pred HHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccch
Confidence 99 68888888888877776211000 0 00 00 000 01123
Q ss_pred eeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCC---CCccEEEEEeeec
Q 016231 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR---VGKGIAYVLFKTR 392 (393)
Q Consensus 338 tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg---~~kGfaFVeF~t~ 392 (393)
+|||.||++++|.++|..+|..+ |.|.+|.|...++.. .+.|||||+|.++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~ 570 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPANKYLSMGFGFVEFAKP 570 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccccccccceeEEEecCH
Confidence 39999999999999999999998 999999998775422 3459999999874
No 64
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.5e-10 Score=107.52 Aligned_cols=83 Identities=28% Similarity=0.458 Sum_probs=74.0
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..||||||+|...+|+.-|...|-.||.|..|.++.+- . .+++||||||+|...++|.+|| .
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDy--e---------------sqkHRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDY--E---------------SQKHRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccch--h---------------cccccceeEEEeeccchhHHHhhc
Confidence 46899999999999999999999999999999986653 2 2348899999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCCCcc
Q 016231 303 FNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~ 323 (393)
||+..|.||.|+|.++.|...
T Consensus 72 MnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 72 MNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred CchhhhcceeEEEeecCCccc
Confidence 999999999999999987643
No 65
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.00 E-value=1.7e-09 Score=111.45 Aligned_cols=76 Identities=25% Similarity=0.463 Sum_probs=67.4
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
+.||||||.+++++++|+..|..||.|..|.++.+. .++ .++||+||+|.+.++|..|+ .||
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~--~tG---------------~skgfGfi~f~~~~~ar~a~e~ln 341 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS--ETG---------------RSKGFGFITFVNKEDARKALEQLN 341 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeecccc--ccc---------------cccCcceEEEecHHHHHHHHHHhc
Confidence 349999999999999999999999999999996654 233 46699999999999999998 799
Q ss_pred CceeCCeEEEEeec
Q 016231 305 MAVIGGNHIRLDRA 318 (393)
Q Consensus 305 g~~~~Gr~I~V~~a 318 (393)
|..|-|+.|.|...
T Consensus 342 gfelAGr~ikV~~v 355 (549)
T KOG0147|consen 342 GFELAGRLIKVSVV 355 (549)
T ss_pred cceecCceEEEEEe
Confidence 99999999998764
No 66
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=8.8e-10 Score=113.25 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=71.5
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
+.|||||||+++++++|..+|+..|.|.+++++.|+ +++. .+||||++|.+.+.+..|+ .||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~--~tG~---------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR--ETGK---------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc--cCCC---------------cCceeeEecCchhhHHHHHHhcC
Confidence 889999999999999999999999999999998876 4444 4599999999999999999 699
Q ss_pred CceeCCeEEEEeecCC
Q 016231 305 MAVIGGNHIRLDRACP 320 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~ 320 (393)
|..+.||.|+|.++..
T Consensus 82 g~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASN 97 (435)
T ss_pred CcccCCceEEeecccc
Confidence 9999999999999853
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=9.7e-10 Score=103.02 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=50.7
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
-++||||||+|.++.+.|+..|++| |+|...-|+.|..+|+++|||||+|.+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~rskGyGfVTf~d~ 64 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTGRSKGYGFVTFRDA 64 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCccccceeeEEeecH
Confidence 3689999999999999999999999 9999999999999999999999999874
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.9e-09 Score=93.51 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=69.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.-.|||.++...+|+++|...|..||+|..|.|-.+. . +|-.+|||+|+|.+...|++|+ .+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR--R---------------tGy~KGYaLvEYet~keAq~A~~~~ 134 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR--R---------------TGYVKGYALVEYETLKEAQAAIDAL 134 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccc--c---------------cccccceeeeehHhHHHHHHHHHhc
Confidence 5779999999999999999999999999999884433 2 3446699999999999999999 79
Q ss_pred cCceeCCeEEEEeecC
Q 016231 304 NMAVIGGNHIRLDRAC 319 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~ 319 (393)
||..|.|..|.|+|+.
T Consensus 135 Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 135 NGAELLGQNVSVDWCF 150 (170)
T ss_pred cchhhhCCceeEEEEE
Confidence 9999999999999985
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.89 E-value=2e-09 Score=81.41 Aligned_cols=49 Identities=37% Similarity=0.734 Sum_probs=46.2
Q ss_pred eeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 339 LfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|||+|||+.+++++|+++|..| |.|..+.+..+ .++..+|||||+|.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~-~~~~~~~~a~V~F~~~ 49 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRN-SSGKSKGYAFVEFESE 49 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEE-TTSSEEEEEEEEESSH
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhccccccccc-ccccccceEEEEEcCH
Confidence 7999999999999999999999 99999999998 6789999999999874
No 70
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=3.4e-10 Score=105.06 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=100.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.+||||+||...++++-|.++|-+.|+|..|.|+.+.. +. -+ ||||.|.++-++..|+ -+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d---~~---------------~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD---QE---------------QK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc---CC---------------Cc-eeeeecccccchhhhhhhc
Confidence 58999999999999999999999999999999865431 11 12 9999999999999999 58
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
||..+.++.|.|..-+...- .- |...++.+.+...|+.. |.|..+|+.++.+ |.++.
T Consensus 70 ng~~l~~~e~q~~~r~G~sh-------------ap-----ld~r~~~ei~~~v~s~a----~p~~~~R~~~~~d-~rnrn 126 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCGNSH-------------AP-----LDERVTEEILYEVFSQA----GPIEGVRIPTDND-GRNRN 126 (267)
T ss_pred ccchhccchhhcccccCCCc-------------ch-----hhhhcchhhheeeeccc----CCCCCcccccccc-CCccC
Confidence 99999888887755432100 01 45558889999999987 8999999999975 88999
Q ss_pred EEEEEe
Q 016231 384 IAYVLF 389 (393)
Q Consensus 384 faFVeF 389 (393)
++||++
T Consensus 127 ~~~~~~ 132 (267)
T KOG4454|consen 127 FGFVTY 132 (267)
T ss_pred ccchhh
Confidence 999986
No 71
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.88 E-value=1.1e-09 Score=107.38 Aligned_cols=148 Identities=22% Similarity=0.218 Sum_probs=111.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
....++|+|++.+.+.+.++..++..+|.+..+.+.... +...++||++|.|...+.+..||.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~-----------------~~~~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE-----------------DSLSSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhc-----------------cccccccceeeccccHHHHHHHHH
Confidence 347899999999999999999999999976665552211 123467999999999999999998
Q ss_pred hcCc-eeCCeEEEEeecCCCcccCCC-CCCCCcCCcceee-eCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCC
Q 016231 303 FNMA-VIGGNHIRLDRACPPRKKLKG-EDAPLYDIKKTVF-VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (393)
Q Consensus 303 lng~-~~~Gr~I~V~~a~~~~~~~~~-~~~~~~~~~~tLf-VgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg 379 (393)
+.+. .+.++.+.............. .......+..++| |+||++.++.++|+.+|..+ |.|..++++.++.+|
T Consensus 149 ~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~ 224 (285)
T KOG4210|consen 149 ESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESG 224 (285)
T ss_pred hhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCcc
Confidence 7775 555555555444322210100 1011223344555 99999999999999999998 999999999999999
Q ss_pred CCccEEEEEeee
Q 016231 380 VGKGIAYVLFKT 391 (393)
Q Consensus 380 ~~kGfaFVeF~t 391 (393)
.++|||||.|.+
T Consensus 225 ~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 225 DSKGFAYVDFSA 236 (285)
T ss_pred chhhhhhhhhhh
Confidence 999999999964
No 72
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.87 E-value=3.9e-08 Score=96.67 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=106.8
Q ss_pred CcCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 219 ~~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
.-+..-+..|||.|||.++|-+++.++|+.||.|. +++ .++.++-- .=+-+.|+-+|-|.+.|...+++.
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~-----~d~--~t~epk~K---lYrd~~G~lKGDaLc~y~K~ESVe 197 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIM-----RDP--QTGEPKVK---LYRDNQGKLKGDALCCYIKRESVE 197 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEe-----ccC--CCCCeeEE---EEecCCCCccCceEEEeecccHHH
Confidence 33344466799999999999999999999999653 222 22222200 001123567799999999999999
Q ss_pred HHH-HhcCceeCCeEEEEeecCCCcccC----------------------C-----C--CCCCCcCCcceeeeCCCC---
Q 016231 299 AAL-AFNMAVIGGNHIRLDRACPPRKKL----------------------K-----G--EDAPLYDIKKTVFVGNLP--- 345 (393)
Q Consensus 299 ~Al-~lng~~~~Gr~I~V~~a~~~~~~~----------------------~-----~--~~~~~~~~~~tLfVgNLp--- 345 (393)
.|+ -|++..|.|+.|+|..|....+.. . . .+.+.....++|.|.||=
T Consensus 198 LA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~ 277 (382)
T KOG1548|consen 198 LAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPE 277 (382)
T ss_pred HHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHH
Confidence 999 599999999999999985321100 0 0 011223345789999972
Q ss_pred -CCCC-------HHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 346 -FDVK-------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 346 -~~~t-------eedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+..+ +++|.+-++.| |.|..|-|.-. .+.|.+-|.|.+.
T Consensus 278 ~~~~~~~l~~dlkedl~eec~K~----G~v~~vvv~d~----hPdGvvtV~f~n~ 324 (382)
T KOG1548|consen 278 DFEKNPDLLNDLKEDLTEECEKF----GQVRKVVVYDR----HPDGVVTVSFRNN 324 (382)
T ss_pred HhccCHHHHHHHHHHHHHHHHHh----CCcceEEEecc----CCCceeEEEeCCh
Confidence 2233 45666778888 99999987533 3678899999874
No 73
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.85 E-value=3.9e-08 Score=98.40 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=107.0
Q ss_pred ccEEEEeCCCc-cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~-~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
...|.|.||.. .+|.+.|..+|+-||.|..|.|.... + --|.|+|.+...|+.|+ .
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----k------------------d~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----K------------------DNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----C------------------cceeeeecchhHHHHHHHH
Confidence 67899999965 58999999999999999999996533 1 26999999999999999 6
Q ss_pred hcCceeCCeEEEEeecCCCcccCCC----------CC----------------CCCcCCcceeeeCCCCCCCCHHHHHHH
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKG----------ED----------------APLYDIKKTVFVGNLPFDVKDEEIYQL 356 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~----------~~----------------~~~~~~~~tLfVgNLp~~~teedL~e~ 356 (393)
|+|..|.|+.|+|..+.+..-.... +. ...+.++.+|.+.|+|.++++++|+.+
T Consensus 355 L~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~ 434 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNL 434 (492)
T ss_pred hhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHh
Confidence 9999999999999998764322111 00 012456789999999999999999999
Q ss_pred hhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 357 FCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 357 F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
|...+ |.|....+. ++.+-+|++++.+
T Consensus 435 f~~~g---~~vkafkff-----~kd~kmal~q~~s 461 (492)
T KOG1190|consen 435 FQEPG---GQVKAFKFF-----QKDRKMALPQLES 461 (492)
T ss_pred hhcCC---ceEEeeeec-----CCCcceeecccCC
Confidence 99873 555555543 2345688888765
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.84 E-value=4.2e-09 Score=80.61 Aligned_cols=49 Identities=31% Similarity=0.649 Sum_probs=44.4
Q ss_pred eeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 339 LfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|||+|||+++++++|+++|+.| |.|..|++..+.+ |.++|+|||+|.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~-~~~~~~a~v~f~~~ 49 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKD-GQSRGFAFVEFSSE 49 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTT-SSEEEEEEEEESSH
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeec-cccCCEEEEEeCCH
Confidence 7999999999999999999999 8999999999977 99999999999874
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.84 E-value=1.3e-08 Score=75.13 Aligned_cols=55 Identities=27% Similarity=0.458 Sum_probs=47.3
Q ss_pred HHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCceeCCeEEEEeec
Q 016231 242 LIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 242 L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~V~~a 318 (393)
|..+|+.||.|..|.+... .+|+|||+|.+.++|..|+ .||+..|.|+.|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~----------------------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK----------------------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT----------------------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6889999999999988331 1279999999999999999 69999999999999875
No 76
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.6e-09 Score=98.21 Aligned_cols=56 Identities=20% Similarity=0.568 Sum_probs=52.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+..+.-|||||||+.+|+-||.-+|++| |+|..|.|++|..||.++||||+.|.+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQ 87 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQ 87 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCc
Confidence 4456789999999999999999999999 9999999999999999999999999763
No 77
>smart00361 RRM_1 RNA recognition motif.
Probab=98.79 E-value=2.6e-08 Score=77.21 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=50.1
Q ss_pred HHHHHHHhc----ccCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCceeCCeE
Q 016231 239 KKTLIKEFI----KFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNH 312 (393)
Q Consensus 239 ee~L~~~Fs----~~G~I~sVr-i~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~ 312 (393)
+++|+.+|+ .||.|.+|. ++.++.... +.++|||||.|.+.++|..|+ .|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~---------------~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYE---------------NHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCC---------------CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578889998 999999985 544332111 236699999999999999999 69999999999
Q ss_pred EEE
Q 016231 313 IRL 315 (393)
Q Consensus 313 I~V 315 (393)
|.+
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 986
No 78
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=4.8e-10 Score=120.15 Aligned_cols=125 Identities=30% Similarity=0.337 Sum_probs=106.5
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
+.+...++||+||++.+.+.+|...|..+|.+..+++. ...+.+. -+|+|||+|..++++.+|
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~--~h~n~~~---------------~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV--IHKNEKR---------------FRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH--HHhhccc---------------cccceeeEeecCCchhhh
Confidence 34567899999999999999999999999988877764 1223333 459999999999999999
Q ss_pred HHhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC
Q 016231 301 LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (393)
Q Consensus 301 l~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~ 380 (393)
+.++...+.| ...|||.|+|+..|.++|+.+|..+ |.++++++++.. .|+
T Consensus 726 V~f~d~~~~g-------------------------K~~v~i~g~pf~gt~e~~k~l~~~~----gn~~~~~~vt~r-~gk 775 (881)
T KOG0128|consen 726 VAFRDSCFFG-------------------------KISVAISGPPFQGTKEELKSLASKT----GNVTSLRLVTVR-AGK 775 (881)
T ss_pred hhhhhhhhhh-------------------------hhhhheeCCCCCCchHHHHhhcccc----CCccccchhhhh-ccc
Confidence 9877766666 2479999999999999999999999 999999999885 699
Q ss_pred CccEEEEEeeec
Q 016231 381 GKGIAYVLFKTR 392 (393)
Q Consensus 381 ~kGfaFVeF~t~ 392 (393)
++|.|||.|.++
T Consensus 776 pkg~a~v~y~~e 787 (881)
T KOG0128|consen 776 PKGKARVDYNTE 787 (881)
T ss_pred cccceeccCCCc
Confidence 999999999875
No 79
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.75 E-value=2e-08 Score=106.84 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=84.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.--++|||||+|+..+++.+|..+|..||.|.+|.++- ++|||||.+...++|..||
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHH
Confidence 34579999999999999999999999999999998822 5589999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCG 359 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~ 359 (393)
+|+...+.++.|.|.|+....-+....+- -...+=|.-||+..-..+|..++..
T Consensus 475 qkl~n~kv~~k~Iki~Wa~g~G~kse~k~~----wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 475 QKLSNVKVADKTIKIAWAVGKGPKSEYKDY----WDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred HHHhcccccceeeEEeeeccCCcchhhhhh----hhcccCeeEeehHhcCHHHHHhhhh
Confidence 89999999999999999754322210000 0112334446777555557777654
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=2e-08 Score=104.30 Aligned_cols=147 Identities=20% Similarity=0.402 Sum_probs=115.5
Q ss_pred CcCCCcccEEEEeCCCccCCHHHHHHHhccc-----------C-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceE
Q 016231 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKF-----------G-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH 286 (393)
Q Consensus 219 ~~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~-----------G-~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~ 286 (393)
.......+.+||+++|+.++++.+..+|..- | .+..|.|- ....|
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n-----------------------~~~nf 225 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN-----------------------LEKNF 225 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec-----------------------ccccc
Confidence 3445567889999999999999999999863 2 24445441 23469
Q ss_pred EEEeeCCHHHHHHHHHhcCceeCCeEEEEeecCCCcccCCC----------C----CCCCcCCcceeeeCCCCCCCCHHH
Q 016231 287 AYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKG----------E----DAPLYDIKKTVFVGNLPFDVKDEE 352 (393)
Q Consensus 287 AFVeF~s~e~A~~Al~lng~~~~Gr~I~V~~a~~~~~~~~~----------~----~~~~~~~~~tLfVgNLp~~~teed 352 (393)
||++|.+.+.|..|+.+++..+.|+.+.+............ . ..........+||+|||..+++.+
T Consensus 226 a~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q 305 (500)
T KOG0120|consen 226 AFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQ 305 (500)
T ss_pred eeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHH
Confidence 99999999999999999999999998887654321111100 0 011234567899999999999999
Q ss_pred HHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 353 L~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++...| |.+...+++.|..+|.++||||.+|.++
T Consensus 306 ~~Ell~~f----g~lk~f~lv~d~~~g~skg~af~ey~dp 341 (500)
T KOG0120|consen 306 VKELLDSF----GPLKAFRLVKDSATGNSKGFAFCEYCDP 341 (500)
T ss_pred HHHHHHhc----ccchhheeecccccccccceeeeeeeCC
Confidence 99999999 9999999999999999999999999764
No 81
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.5e-08 Score=95.65 Aligned_cols=56 Identities=30% Similarity=0.497 Sum_probs=52.6
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+...+|-|.||+.++++++|+++|..| |.|..|.|.+|..||.+||||||.|.++
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sR 241 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESR 241 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecH
Confidence 3456789999999999999999999999 9999999999999999999999999876
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.73 E-value=1.4e-08 Score=100.84 Aligned_cols=146 Identities=18% Similarity=0.283 Sum_probs=105.9
Q ss_pred ccEEEEeCCCccCCHHHHHHHhccc----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~----G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.-.|-+++||+++++.++..||..- |..+.|-+++.+ +++-.|-|||.|..+++|+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp------------------dgrpTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP------------------DGRPTGDAFVLFACEEDAQFA 222 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC------------------CCCcccceEEEecCHHHHHHH
Confidence 3458889999999999999999843 233456665543 223558999999999999999
Q ss_pred HHhcCceeCCeEEEEeecCCCc----------ccCCC------------CCCCCcCCcceeeeCCCCCCCCHHHHHHHhh
Q 016231 301 LAFNMAVIGGNHIRLDRACPPR----------KKLKG------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (393)
Q Consensus 301 l~lng~~~~Gr~I~V~~a~~~~----------~~~~~------------~~~~~~~~~~tLfVgNLp~~~teedL~e~F~ 358 (393)
|..|...++-|.|.+-++.... ..... ...+......+|-+++||+..+.++|..+|.
T Consensus 223 L~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg 302 (508)
T KOG1365|consen 223 LRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG 302 (508)
T ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH
Confidence 9877777777777665542110 00000 0011223367899999999999999999999
Q ss_pred cCCCCCCCeEE--EEEeecCCCCCCccEEEEEeeec
Q 016231 359 GLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 359 ~~~~~~G~I~~--VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.|. -.|.. |.++.+ ..|++.|-|||+|.+.
T Consensus 303 dFa---~~i~f~gVHmv~N-~qGrPSGeAFIqm~na 334 (508)
T KOG1365|consen 303 DFA---TDIRFQGVHMVLN-GQGRPSGEAFIQMRNA 334 (508)
T ss_pred HHh---hhcccceeEEEEc-CCCCcChhhhhhhhhh
Confidence 984 35555 888888 5799999999999763
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=1.6e-08 Score=97.62 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=53.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.++-+||||+-|+.++++..|+..|+.| |.|..|+||+|..||.++|||||+|.++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTgkskGYAFIeye~e 153 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTGKSKGYAFIEYEHE 153 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccCCccceEEEEeccH
Confidence 4677999999999999999999999999 9999999999999999999999999874
No 84
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=5.2e-08 Score=95.88 Aligned_cols=78 Identities=28% Similarity=0.550 Sum_probs=68.8
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
++....|||||||-..+++.+|+.+|-+||+|.+|++.. ..|+|||+|.+..+|+.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------------------~~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------------------RKGCAFVTFTTREAAEKA 280 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------------------ccccceeeehhhHHHHHH
Confidence 345578999999998999999999999999999999833 237999999999999999
Q ss_pred H--HhcCceeCCeEEEEeecCCC
Q 016231 301 L--AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l--~lng~~~~Gr~I~V~~a~~~ 321 (393)
. .+|...|+|++|.|.|..+.
T Consensus 281 ae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 281 AEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred HHhhcceeeecceEEEEEeCCCc
Confidence 8 38888899999999999873
No 85
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.9e-08 Score=97.76 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=72.5
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..+...|||.-|.+-+|.++|.-+|+.||.|.+|.++++.. + |-+-.||||+|.+.+++++|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k--t---------------gdsLqyaFiEFen~escE~Ay 298 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK--T---------------GDSLQYAFIEFENKESCEQAY 298 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccc--c---------------cchhheeeeeecchhhHHHHH
Confidence 34568899999999999999999999999999999988752 2 234469999999999999998
Q ss_pred -HhcCceeCCeEEEEeecCC
Q 016231 302 -AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~ 320 (393)
+|+...|..+.|.|.++..
T Consensus 299 FKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 299 FKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred hhhcceeeccceEEeehhhh
Confidence 9999999999999999854
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.62 E-value=5.8e-08 Score=89.62 Aligned_cols=53 Identities=38% Similarity=0.757 Sum_probs=50.7
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+|||+|||+.+++++|+++|..| |.|..|+|+.+..+|.++|||||+|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~~~~g~~~v~f~~~ 167 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETGKSRGFAFVEFESE 167 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccCccCceEEEEecCH
Confidence 5899999999999999999999999 9999999999998999999999999874
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.62 E-value=3.1e-07 Score=93.99 Aligned_cols=144 Identities=22% Similarity=0.291 Sum_probs=106.1
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~s-Vri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
....|-+++|||.+|+++|.+||+-+-.|.. |.|+.++ .+..+|=|||+|.+.+.|+.||.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~------------------rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ------------------RGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC------------------CCCcccceEEEecCHHHHHHHHH
Confidence 4578999999999999999999998765544 3333322 23367999999999999999998
Q ss_pred hcCceeCCeEEEEeecCCC-------------------cc--cCCC---------------------------------C
Q 016231 303 FNMAVIGGNHIRLDRACPP-------------------RK--KLKG---------------------------------E 328 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~-------------------~~--~~~~---------------------------------~ 328 (393)
.|...|..|.|.|..+... .. ..+. .
T Consensus 164 rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 164 RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 8888888888888765210 00 0000 0
Q ss_pred C-----------------C--C-----------CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC
Q 016231 329 D-----------------A--P-----------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (393)
Q Consensus 329 ~-----------------~--~-----------~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t 378 (393)
+ . + .......+++++||+..+..++..+|... ....|.|-..+ +
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-----~p~~v~i~ig~-d 317 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-----NPYRVHIEIGP-D 317 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-----CceeEEEEeCC-C
Confidence 0 0 0 00112568899999999999999999986 45588887775 6
Q ss_pred CCCccEEEEEeee
Q 016231 379 RVGKGIAYVLFKT 391 (393)
Q Consensus 379 g~~kGfaFVeF~t 391 (393)
|+..|-|+|+|.|
T Consensus 318 Gr~TGEAdveF~t 330 (510)
T KOG4211|consen 318 GRATGEADVEFAT 330 (510)
T ss_pred CccCCcceeeccc
Confidence 9999999999976
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=98.62 E-value=8.8e-08 Score=71.16 Aligned_cols=49 Identities=39% Similarity=0.746 Sum_probs=45.5
Q ss_pred eeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 338 tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+|||+|||..++.++|+++|..| |.|..+.+..++ +.++|+|||+|.+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~--~~~~~~~~v~f~~~ 49 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDT--GKSKGFAFVEFESE 49 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCC--CCCCceEEEEeCCH
Confidence 58999999999999999999999 999999999886 78899999999874
No 89
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.56 E-value=7.2e-08 Score=87.54 Aligned_cols=81 Identities=28% Similarity=0.364 Sum_probs=68.7
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~s-Vri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
...||||||.+.+++..|+..|+.||.|.+ -.|++++ +++. .+|||||.|.+.+.+.+|+ .
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~--~tg~---------------~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP--DTGN---------------PKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccc--cCCC---------------CCCCeEEechhHHHHHHHHHH
Confidence 377999999999999999999999998754 2565655 2333 4589999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCCCc
Q 016231 303 FNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~ 322 (393)
+||+.+..+.|.|.++....
T Consensus 159 ~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred hccchhcCCceEEEEEEecC
Confidence 99999999999999987543
No 90
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=1e-07 Score=82.19 Aligned_cols=53 Identities=28% Similarity=0.501 Sum_probs=49.8
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.|||||||++.+++++|+++|+.| |.|..|.+-.|..+-.+=|||||+|.++
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kktpCGFCFVeyy~~ 88 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKKTPCGFCFVEYYSR 88 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCcCccceEEEEEecc
Confidence 5799999999999999999999999 9999999999998888999999999764
No 91
>smart00360 RRM RNA recognition motif.
Probab=98.51 E-value=2.2e-07 Score=68.64 Aligned_cols=48 Identities=42% Similarity=0.741 Sum_probs=44.8
Q ss_pred eCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 341 VgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+|||..+++++|+++|+.| |.|..+.+..++.++.++|||||+|.+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~~~a~v~f~~~ 48 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTGKSKGFAFVEFESE 48 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCCCCCceEEEEeCCH
Confidence 68999999999999999999 9999999999988899999999999864
No 92
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=1.2e-07 Score=91.54 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=68.8
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.+.+.+||||||.+.++-.+|+..|..||+|..|.|+. +|+||.|.-.++|..|+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------------------------dy~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------------------------DYAFVHFDRAEDAVEAI 129 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------------------------ceeEEEEeeccchHHHH
Confidence 44578899999999999999999999999999999943 59999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+++|.|+++.|+.+...
T Consensus 130 r~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 130 RGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hcccccccccceeeeeeeccc
Confidence 79999999999999998654
No 93
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=6.8e-08 Score=104.35 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=107.7
Q ss_pred CcCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 219 ~~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
.++....+|||+|||+..+++.+|+..|..+|.|..|.|-+.++ ++..-||||.|.+...+.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------------~~esa~~f~~~~n~dmtp 427 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------------KTESAYAFVSLLNTDMTP 427 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------------CcccchhhhhhhccccCc
Confidence 35567789999999999999999999999999999999855432 123349999999999999
Q ss_pred HHH-HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCC
Q 016231 299 AAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (393)
Q Consensus 299 ~Al-~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~ 377 (393)
.|+ .+.+..|....+++.+..+ ...+.+.++|++|+..+....|...|..| |.|..|.+-
T Consensus 428 ~ak~e~s~~~I~~g~~r~glG~~-----------kst~ttr~~sgglg~w~p~~~l~r~fd~f----Gpir~Idy~---- 488 (975)
T KOG0112|consen 428 SAKFEESGPLIGNGTHRIGLGQP-----------KSTPTTRLQSGGLGPWSPVSRLNREFDRF----GPIRIIDYR---- 488 (975)
T ss_pred ccchhhcCCccccCccccccccc-----------ccccceeeccCCCCCCChHHHHHHHhhcc----Ccceeeecc----
Confidence 887 7888777655555554432 24467899999999999999999999999 899887762
Q ss_pred CCCCccEEEEEeeec
Q 016231 378 MRVGKGIAYVLFKTR 392 (393)
Q Consensus 378 tg~~kGfaFVeF~t~ 392 (393)
-| --||||.|.++
T Consensus 489 hg--q~yayi~yes~ 501 (975)
T KOG0112|consen 489 HG--QPYAYIQYESP 501 (975)
T ss_pred cC--CcceeeecccC
Confidence 22 34999999764
No 94
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.48 E-value=2.7e-07 Score=97.70 Aligned_cols=90 Identities=24% Similarity=0.400 Sum_probs=76.7
Q ss_pred CCCCcCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHH
Q 016231 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (393)
Q Consensus 216 ~~~~~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e 295 (393)
..+|+.+.....|||+||++.+++..|...|..||+|.+|+|+......... | .+-|+||-|.+..
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~-r-------------~r~cgfvafmnR~ 230 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKR-R-------------ERNCGFVAFMNRA 230 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhc-c-------------ccccceeeehhhh
Confidence 4467778888999999999999999999999999999999998765322221 1 3459999999999
Q ss_pred HHHHHH-HhcCceeCCeEEEEeecC
Q 016231 296 STEAAL-AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 296 ~A~~Al-~lng~~~~Gr~I~V~~a~ 319 (393)
+|++|+ .|+|..+.++.+.+.|+.
T Consensus 231 D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 231 DAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred hHHHHHHHhcceeeeeeeeeecccc
Confidence 999999 799999999999999984
No 95
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.47 E-value=4.6e-07 Score=83.76 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=67.8
Q ss_pred ccEEEEeCCCccCCHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~-G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..-+||+.||+.+.+..|..+|.+| |.|..+++-|.. .+|.|+|||||+|.+.+.|..|- .
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk-----------------rTGNSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK-----------------RTGNSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc-----------------ccCCcCceEEEEeccHHHHHHHHHH
Confidence 4569999999999999999999998 677777763432 25668899999999999999888 6
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
||+..|.|+.|.|....+.
T Consensus 112 MNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 112 MNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhhhhhhheeeeEEeCch
Confidence 9999999999999887554
No 96
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.43 E-value=3.9e-07 Score=94.38 Aligned_cols=81 Identities=15% Similarity=0.339 Sum_probs=70.2
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...+.|||.+|+..+...+|+.+|++||.|+-..++++. ..|- -++|+||++.+...|..||
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa----RsPG-------------aRCYGfVTMSts~eAtkCI~ 465 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA----RSPG-------------ARCYGFVTMSTSAEATKCIE 465 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecC----CCCC-------------cceeEEEEecchHHHHHHHH
Confidence 346889999999999999999999999999999886643 2221 4589999999999999999
Q ss_pred HhcCceeCCeEEEEeecCC
Q 016231 302 AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~ 320 (393)
.|+.+.|.|+.|.|..+..
T Consensus 466 hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 466 HLHRTELHGRMISVEKAKN 484 (940)
T ss_pred Hhhhhhhcceeeeeeeccc
Confidence 6999999999999998853
No 97
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.41 E-value=4.3e-07 Score=89.96 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=85.4
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
...||||+||.++++++|+.+|.+||.|..+.++.+. .+.. .+||+||.|.+++++..++...
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~--~~~~---------------~rgFgfv~~~~e~sVdkv~~~~ 159 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK--TTSR---------------PRGFGFVTFDSEDSVDKVTLQK 159 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc--cccc---------------cccceeeEeccccccceecccc
Confidence 5689999999999999999999999999988887765 2333 5599999999999999999888
Q ss_pred CceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcC
Q 016231 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGL 360 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~ 360 (393)
-+.|+|+.+.|..|.+......... .........|++-..+.-.|..+|..|
T Consensus 160 f~~~~gk~vevkrA~pk~~~~~~~~----~~~~~~~~~~~g~~~~~~~l~~~~~g~ 211 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQSTKS----SVSTRGKGNNLGNGRTGFFLKKYFKGY 211 (311)
T ss_pred eeeecCceeeEeeccchhhcccccc----ccccccccccccccccccccchhcccc
Confidence 9999999999999987644322111 011122222444444455566666666
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=8.2e-07 Score=92.42 Aligned_cols=146 Identities=21% Similarity=0.304 Sum_probs=106.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.+.+||+|||...++.++.+++..||++....++.+.. + +.++||||.+|.+......|+ .|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~--~---------------g~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA--T---------------GNSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccc--c---------------ccccceeeeeeeCCcchhhhhccc
Confidence 46799999999999999999999999999988866552 1 236699999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCC---------------CCCcCCcceeeeCCC--CCCC-CH-------HHHHHHhh
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGED---------------APLYDIKKTVFVGNL--PFDV-KD-------EEIYQLFC 358 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~---------------~~~~~~~~tLfVgNL--p~~~-te-------edL~e~F~ 358 (393)
||..+.+..|.|+.++.......... .....++..|.+.|+ |.++ .+ ++|+.-+.
T Consensus 352 nGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~ 431 (500)
T KOG0120|consen 352 NGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA 431 (500)
T ss_pred chhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc
Confidence 99999999999999875432221110 112334566666665 2222 12 23444456
Q ss_pred cCCCCCCCeEEEEEeec-C--CCCCCccEEEEEeee
Q 016231 359 GLNDLESSVEAVRVIRH-P--HMRVGKGIAYVLFKT 391 (393)
Q Consensus 359 ~~~~~~G~I~~VrI~~d-~--~tg~~kGfaFVeF~t 391 (393)
.| |.|.+|.|+++ . ...-+-|--||+|.+
T Consensus 432 k~----g~v~~v~ipr~~~~~~~~~G~GkVFVefas 463 (500)
T KOG0120|consen 432 KF----GAVRSVEIPRPYPDENPVPGTGKVFVEFAD 463 (500)
T ss_pred cc----CceeEEecCCCCCCCCcCCCcccEEEEecC
Confidence 66 99999999998 2 222345667999986
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.38 E-value=8.3e-07 Score=66.18 Aligned_cols=50 Identities=44% Similarity=0.788 Sum_probs=45.5
Q ss_pred eeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 338 tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+|+|+|||..+++++|+++|+.| |.|..+.+..++.+ .++|+|||+|.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~~-~~~~~~~v~f~s~ 50 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKDT-KSKGFAFVEFEDE 50 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCCC-CcceEEEEEECCH
Confidence 58999999999999999999999 89999999988654 7799999999864
No 100
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=4.3e-07 Score=88.94 Aligned_cols=54 Identities=26% Similarity=0.475 Sum_probs=48.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+..++|+|.|||+..-+.||+.+|..| |.|.+|.|+.+. -| +||||||+|.+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNE-RG-SKGFGFVTmen~ 146 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNE-RG-SKGFGFVTMENP 146 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEecc-CC-CCccceEEecCh
Confidence 4456899999999999999999999999 999999999883 34 899999999864
No 101
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=7.7e-07 Score=88.18 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=70.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
+.-..|||..+.++.+++||+..|..||+|..|.|-+.+. .+.|+||+||+|.+..+...|+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-----------------~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----------------CCCccceeeEEeccccchHHHhh
Confidence 3457899999999999999999999999999999977652 1237899999999999999999
Q ss_pred HhcCceeCCeEEEEeecC
Q 016231 302 AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~ 319 (393)
.||-..++|..|+|..+.
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 699999999999998774
No 102
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.34 E-value=5.9e-07 Score=83.17 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=53.4
Q ss_pred CCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 331 PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 331 ~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+..+.-.+|.|-||-+-++.++|+.+|+.| |.|-.|.|++|+.|+.++|||||-|..+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k 65 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDK 65 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeec
Confidence 345667899999999999999999999999 9999999999999999999999999763
No 103
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.29 E-value=1.1e-06 Score=83.96 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=69.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
...|||||+.+.+|.+.|..+|..||.|..|.|+.+.+. ++.+|||||+|.+.+.++.||.||
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~-----------------~~~k~~~yvef~~~~~~~~ay~l~ 163 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR-----------------GHPKGFAYVEFSSYELVEEAYKLD 163 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccC-----------------CCcceeEEEecccHhhhHHHhhcC
Confidence 578999999999999999999999999998888776532 235599999999999999999999
Q ss_pred CceeCCeEEEEeecC
Q 016231 305 MAVIGGNHIRLDRAC 319 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~ 319 (393)
+..|.|+.|.|.+..
T Consensus 164 gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 164 GSEIPGPAIEVTLKR 178 (231)
T ss_pred Ccccccccceeeeee
Confidence 999999999998764
No 104
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=1.3e-06 Score=72.85 Aligned_cols=52 Identities=25% Similarity=0.676 Sum_probs=45.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
.+..+.|||+|||+.+|.+++.++|..| |.|..|||-..+. -+|-|||.|.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~---TrGTAFVVYed 66 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKE---TRGTAFVVYED 66 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccC---cCceEEEEehH
Confidence 3456899999999999999999999999 9999999976654 58999999975
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.26 E-value=8.9e-07 Score=91.32 Aligned_cols=52 Identities=27% Similarity=0.620 Sum_probs=50.2
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..|||||+|+++++++|..+|... |.|.+++++.|+.+|.++||||++|.+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~ 70 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDE 70 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCch
Confidence 799999999999999999999998 9999999999999999999999999874
No 106
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.25 E-value=1.7e-06 Score=87.47 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=64.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.+..|+|||+|||++.|.+.|++-|..||.|..+.|+. .+ +++| .|.|.++++|+.|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-----~G---------------kskG--VVrF~s~edAEra~ 590 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-----NG---------------KSKG--VVRFFSPEDAERAC 590 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-----cC---------------Cccc--eEEecCHHHHHHHH
Confidence 45679999999999999999999999999998887732 22 2445 89999999999999
Q ss_pred -HhcCceeCCeEEEEee
Q 016231 302 -AFNMAVIGGNHIRLDR 317 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~ 317 (393)
.||+..+.||.|.|.+
T Consensus 591 a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 591 ALMNGSRLDGRNIKVTY 607 (608)
T ss_pred HHhccCcccCceeeeee
Confidence 5999999999999976
No 107
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1.3e-06 Score=83.56 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=72.1
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
+..+.|.|||-.||....+.+|..+|-.||-|.+.++-.|+. +.+|++|+||.|.+..++++|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA-----------------TNQSKCFGFVSfDNp~SaQaA 343 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA-----------------TNQSKCFGFVSFDNPASAQAA 343 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc-----------------cccccceeeEecCCchhHHHH
Confidence 344579999999999999999999999999999988855442 234778999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCC
Q 016231 301 L-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~ 321 (393)
| .|||..|.-++|.|+.-.+.
T Consensus 344 IqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 344 IQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred HHHhcchhhhhhhhhhhhcCcc
Confidence 9 89999999899998876554
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.20 E-value=1.3e-05 Score=80.03 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=103.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
...|-.++|||..++.+|..||.-.--..-.+.+.. ..... -.|.|.|.|.+.+.-+.|++.+
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG---~~qgr--------------Rnge~lvrf~d~e~RdlalkRh 122 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCL---NAQGR--------------RNGEALVRFVDPEGRDLALKRH 122 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeee---hhhhc--------------cccceEEEecCchhhhhhhHhh
Confidence 455677899999999999999985421111111111 11122 2289999999999999999888
Q ss_pred CceeCCeEEEEeecCCCcccCC-C---CCC---CCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCC
Q 016231 305 MAVIGGNHIRLDRACPPRKKLK-G---EDA---PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~~-~---~~~---~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~ 377 (393)
...+.+|.|.|-.+....--.. + ... ......-.|-+++||+++++.++..+|...-.+.|..+.|-+++.+
T Consensus 123 khh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp- 201 (508)
T KOG1365|consen 123 KHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP- 201 (508)
T ss_pred hhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-
Confidence 8889999999977754311000 0 000 1122345688889999999999999995321223567788888886
Q ss_pred CCCCccEEEEEeeec
Q 016231 378 MRVGKGIAYVLFKTR 392 (393)
Q Consensus 378 tg~~kGfaFVeF~t~ 392 (393)
.|+..|-|||.|..+
T Consensus 202 dgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 202 DGRPTGDAFVLFACE 216 (508)
T ss_pred CCCcccceEEEecCH
Confidence 589999999999875
No 109
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.19 E-value=3.5e-06 Score=86.53 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=66.3
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
....+|||+|||++++..+|.++|..||.|...+|..... .+.+-+||||+|.+..+++.||.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~-----------------~~~~~~fgFV~f~~~~~~~~~i~ 348 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP-----------------GGKNPCFGFVEFENAAAVQNAIE 348 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc-----------------CCCcCceEEEEEeecchhhhhhh
Confidence 4456699999999999999999999999999988855321 01123799999999999999997
Q ss_pred hcCceeCCeEEEEeecC
Q 016231 303 FNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~ 319 (393)
-+-..++|+.+.|.--.
T Consensus 349 Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 349 ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cCccccCCeeEEEEecc
Confidence 77888999999997653
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=9e-07 Score=82.62 Aligned_cols=54 Identities=19% Similarity=0.412 Sum_probs=51.0
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
...++||||+|...+++.-|...|-+| |.|..|.|+.|..++++||||||+|.-
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~ 61 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEE 61 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeec
Confidence 356899999999999999999999999 999999999999999999999999964
No 111
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.15 E-value=1.1e-06 Score=87.83 Aligned_cols=143 Identities=21% Similarity=0.185 Sum_probs=104.8
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhcC
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNM 305 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~lng 305 (393)
..|-|.||.+.+|.++++.||.-+|.|..++|.... .+...+ ...-.|||.|.+...+..|..|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~-~d~~~p-------------v~sRtcyVkf~d~~sv~vaQhLtn 73 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNV-DDSKIP-------------VISRTCYVKFLDSQSVTVAQHLTN 73 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCC-CCccCc-------------ceeeeEEEeccCCcceeHHhhhcc
Confidence 479999999999999999999999999999984321 122222 234589999999999999998989
Q ss_pred ceeCCeEEEEeecCCCcc-----------------------cCCCCC--------------CCC----------cCCcce
Q 016231 306 AVIGGNHIRLDRACPPRK-----------------------KLKGED--------------APL----------YDIKKT 338 (393)
Q Consensus 306 ~~~~Gr~I~V~~a~~~~~-----------------------~~~~~~--------------~~~----------~~~~~t 338 (393)
+.|-++.|.|.++...-. .+.++. .|. .+..++
T Consensus 74 tvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt 153 (479)
T KOG4676|consen 74 TVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRT 153 (479)
T ss_pred ceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhh
Confidence 999999988876532100 000000 000 112378
Q ss_pred eeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEee
Q 016231 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFK 390 (393)
Q Consensus 339 LfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~ 390 (393)
|+|++|+..|...++.++|+.+ |.|...++.... ..-+|-|.|.
T Consensus 154 ~~v~sl~~~~~l~e~~e~f~r~----Gev~ya~~ask~----~s~~c~~sf~ 197 (479)
T KOG4676|consen 154 REVQSLISAAILPESGESFERK----GEVSYAHTASKS----RSSSCSHSFR 197 (479)
T ss_pred hhhhcchhhhcchhhhhhhhhc----chhhhhhhhccC----CCcchhhhHh
Confidence 9999999999999999999999 899888875443 3456777774
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=1.8e-06 Score=89.57 Aligned_cols=71 Identities=32% Similarity=0.459 Sum_probs=63.0
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
+-..++|||-|||..++.++|..+|+.||+|..|+.- + ..+|.+||+|.+..+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--~--------------------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--P--------------------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--c--------------------ccCceEEEEEeehHhHHHHH
Confidence 4457999999999999999999999999999887651 1 24589999999999999999
Q ss_pred -HhcCceeCCeEEE
Q 016231 302 -AFNMAVIGGNHIR 314 (393)
Q Consensus 302 -~lng~~~~Gr~I~ 314 (393)
+||+..|.|+.|.
T Consensus 130 k~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhhhhhc
Confidence 7999999999888
No 113
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.10 E-value=8.4e-06 Score=78.11 Aligned_cols=79 Identities=23% Similarity=0.380 Sum_probs=67.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+|+|.|||+.|+.++|.++|..||.+..+-+-.++ . +.+.|.|-|.|...++|..|+ .+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~---~---------------G~s~Gta~v~~~r~~DA~~avk~~ 144 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR---A---------------GRSLGTADVSFNRRDDAERAVKKY 144 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC---C---------------CCCCccceeeecchHhHHHHHHHh
Confidence 4789999999999999999999999977766663322 2 235699999999999999999 79
Q ss_pred cCceeCCeEEEEeecCCC
Q 016231 304 NMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~ 321 (393)
|+..+.|+.|.+....++
T Consensus 145 ~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 145 NGVALDGRPMKIEIISSP 162 (243)
T ss_pred cCcccCCceeeeEEecCc
Confidence 999999999999887654
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.05 E-value=6.6e-06 Score=82.75 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=93.9
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~- 302 (393)
+++.|.++|||++++|.+|..++..||.|..+.+..- . --|||+|.+.++|..-+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------k-----------------nQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------K-----------------NQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc------c-----------------hhhhhhhcchhhhhheeec
Confidence 5789999999999999999999999999998876321 1 279999999998776331
Q ss_pred --hcCceeCCeEEEEeecCCCcccC--------------------------CC-----CCCCCcCCcceeeeCCCCCCCC
Q 016231 303 --FNMAVIGGNHIRLDRACPPRKKL--------------------------KG-----EDAPLYDIKKTVFVGNLPFDVK 349 (393)
Q Consensus 303 --lng~~~~Gr~I~V~~a~~~~~~~--------------------------~~-----~~~~~~~~~~tLfVgNLp~~~t 349 (393)
----.+.|+.|.|+++....-.. .. .......+-.+++|+|+-+.++
T Consensus 84 y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVs 163 (492)
T KOG1190|consen 84 YTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVS 163 (492)
T ss_pred ccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeE
Confidence 11224678888888763210000 00 0001112345789999999999
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 350 DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 350 eedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
-+-|+++|+.| |.|..|.-... + ..--|.|+|.+
T Consensus 164 lDVLHqvFS~f----G~VlKIiTF~K--n--n~FQALvQy~d 197 (492)
T KOG1190|consen 164 LDVLHQVFSKF----GFVLKIITFTK--N--NGFQALVQYTD 197 (492)
T ss_pred HHHHHHHHhhc----ceeEEEEEEec--c--cchhhhhhccc
Confidence 99999999999 88875543322 1 11236777765
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.97 E-value=1.1e-05 Score=74.73 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=52.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....-+||+.+|.-+.+.+|...|.+|+ |.|..+|+.|+..||.++|||||+|.++
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~ 102 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESE 102 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccH
Confidence 44567899999999999999999999983 8999999999999999999999999875
No 116
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.96 E-value=7e-06 Score=71.55 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=50.5
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
....|||.+++..+++++|.+.|..| |.|.+|.|-.|.-||..+|||.|+|.+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtGy~KGYaLvEYet 123 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTGYVKGYALVEYET 123 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccccccceeeeehHh
Confidence 46789999999999999999999999 999999999999999999999999975
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.86 E-value=0.00021 Score=71.50 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=107.6
Q ss_pred CCcccEEEEeCCCcc-CCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~-~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
..+.+.+.|.+|... ++-+-|..+|=.||.|..|.+++.. .|-|.|++.+..+++.|
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHH
Confidence 345788999999865 6788999999999999999997643 27999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCCcccC-------------------C---------CCCCCCcCCcceeeeCCCCCCCCHH
Q 016231 301 L-AFNMAVIGGNHIRLDRACPPRKKL-------------------K---------GEDAPLYDIKKTVFVGNLPFDVKDE 351 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~~~~~-------------------~---------~~~~~~~~~~~tLfVgNLp~~~tee 351 (393)
+ .||+..+.|.+|.|+.+....-.. + ......+.++.+|..-|.|..+|++
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred HHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 9 699999999999999875321000 0 0012235678899999999999999
Q ss_pred HHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 352 EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 352 dL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
.|..+|..... ...+|+|..-. ....--|.++|.+
T Consensus 422 ~l~~i~nek~v---~~~svkvFp~k--serSssGllEfe~ 456 (494)
T KOG1456|consen 422 QLIGICNEKDV---PPTSVKVFPLK--SERSSSGLLEFEN 456 (494)
T ss_pred HHHHHhhhcCC---CcceEEeeccc--ccccccceeeeeh
Confidence 99999987632 24566665443 2223356777765
No 118
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.71 E-value=0.00029 Score=58.53 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=57.4
Q ss_pred cEEEEeCCCccCCHHHHHHHhcc--cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIK--FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~--~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
.||.|+|||-..|.+.|.+++.. .|...-+.|+.|. ....+.|||||-|.+++.|..-. .
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf-----------------~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDF-----------------KNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeec-----------------cCCCceEEEEEEcCCHHHHHHHHHH
Confidence 58999999999999999998875 3444445554443 12347799999999999999877 6
Q ss_pred hcCceeC----CeEEEEeecC
Q 016231 303 FNMAVIG----GNHIRLDRAC 319 (393)
Q Consensus 303 lng~~~~----Gr~I~V~~a~ 319 (393)
++|..|. .+.+.|.+|.
T Consensus 65 f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 65 FNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred HcCCccccCCCCcEEEEehhH
Confidence 8988875 3445555553
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=3.6e-05 Score=76.39 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=52.6
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..|.+.|||.-|.+-++.+||.-+|+.| |.|.+|.|++|..||.+..||||+|.+.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktgdsLqyaFiEFen~ 291 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTGDSLQYAFIEFENK 291 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEecccccchhheeeeeecch
Confidence 4567899999999999999999999999 9999999999999999999999999864
No 120
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.64 E-value=3.9e-05 Score=73.21 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=94.7
Q ss_pred ccEEEEeCCCccCCHHH-H--HHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 225 LRTIFVGNLPLKVKKKT-L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~-L--~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.-..|++|+-..+..+- | ...|+.|-.+....++++. .+.-++++|+.|........+-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~------------------p~~~~~~~~~~~k~s~a~~k~~ 157 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR------------------PQPIRPEAFESFKASDALLKAE 157 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC------------------CCccCcccccCcchhhhhhhhc
Confidence 34577777766665554 2 4556655544433332221 1234589999999777666665
Q ss_pred -HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~ 380 (393)
.-++..+.-+.|++.......... .....+...+||+|.|.-+++.+-|...|..|. .-...++++|.-||+
T Consensus 158 ~~~~~Kki~~~~VR~a~gtswedPs---l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfp----sf~~akviRdkRTgK 230 (290)
T KOG0226|consen 158 TEKEKKKIGKPPVRLAAGTSWEDPS---LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFP----SFQKAKVIRDKRTGK 230 (290)
T ss_pred cccccccccCcceeeccccccCCcc---cccCccccceeecccccccccHHHHHHHHHhcc----chhhccccccccccc
Confidence 455555555555555443221110 011133457999999999999999999999994 456678899999999
Q ss_pred CccEEEEEeeec
Q 016231 381 GKGIAYVLFKTR 392 (393)
Q Consensus 381 ~kGfaFVeF~t~ 392 (393)
++|||||.|.+.
T Consensus 231 SkgygfVSf~~p 242 (290)
T KOG0226|consen 231 SKGYGFVSFRDP 242 (290)
T ss_pred cccceeeeecCH
Confidence 999999999864
No 121
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.62 E-value=0.00018 Score=58.10 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=45.1
Q ss_pred cEEEEeCCCccCCHHHHHH----HhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKTLIK----EFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~----~Fs~~G-~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
..|||.|||.+.+...|+. ++..|| .|.+| +.|.|+|.|.+.+.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------------------------~~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------------------------SGGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------------------------eCCEEEEEeCCHHHHHHH
Confidence 3599999999988776655 555676 34333 126899999999999999
Q ss_pred H-HhcCceeCCeEEEEeecC
Q 016231 301 L-AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~ 319 (393)
+ .|+|..+.|+.|.|.+..
T Consensus 56 ~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHTT--SSSS--EEESS-
T ss_pred HHhhcccccccceEEEEEcC
Confidence 9 799999999999999874
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=97.53 E-value=0.00012 Score=56.56 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=33.2
Q ss_pred HHHHHHHhh----cCCCCCCCeEEEE-EeecCCC--CCCccEEEEEeeec
Q 016231 350 DEEIYQLFC----GLNDLESSVEAVR-VIRHPHM--RVGKGIAYVLFKTR 392 (393)
Q Consensus 350 eedL~e~F~----~~~~~~G~I~~Vr-I~~d~~t--g~~kGfaFVeF~t~ 392 (393)
+++|+++|+ .| |.|..|. |+.++.+ |.++|||||+|.+.
T Consensus 2 ~~~l~~~~~~~~~~f----G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~ 47 (70)
T smart00361 2 DEDFEREFSEEEEYF----GEVGKINKIYIDNVGYENHKRGNVYITFERS 47 (70)
T ss_pred chhHHHHHHHHHHhc----CCeeEEEEEEeCCCCCCCCCcEEEEEEECCH
Confidence 578899998 88 9999995 7777666 89999999999874
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.53 E-value=0.00011 Score=70.09 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=65.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
...||+|.|.-.++.+.|...|.+|-.....+++++. .+++++||+||.|.+..++..|| +|
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk-----------------RTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK-----------------RTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccc-----------------cccccccceeeeecCHHHHHHHHHhh
Confidence 4679999999999999999999999876666665543 24568899999999999999999 79
Q ss_pred cCceeCCeEEEEeec
Q 016231 304 NMAVIGGNHIRLDRA 318 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a 318 (393)
||..++.|.|.+.-+
T Consensus 253 ~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKS 267 (290)
T ss_pred cccccccchhHhhhh
Confidence 999999998877554
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.49 E-value=0.00019 Score=76.47 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=101.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.+.+-+.++++++...++++||...- |.++.|..+.. +.+ ..|-++|.|....+++.|+.-|
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v---~~~--------------~tG~~~v~f~~~~~~q~A~~rn 372 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRV---APP--------------QTGRKTVMFTPQAPFQNAFTRN 372 (944)
T ss_pred hheeeecccccccccchhhhhcCccc-ccccchhhhhc---CCC--------------cCCceEEEecCcchHHHHHhcC
Confidence 35566789999999999999987532 23333322211 111 2589999999999999999888
Q ss_pred CceeCCeEEEEeecCCCc-------cc-C-------C--------------CCC-CCCcCCcceeeeCCCCCCCCHHHHH
Q 016231 305 MAVIGGNHIRLDRACPPR-------KK-L-------K--------------GED-APLYDIKKTVFVGNLPFDVKDEEIY 354 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~-------~~-~-------~--------------~~~-~~~~~~~~tLfVgNLp~~~teedL~ 354 (393)
...+-.|.|.|..+.... .. . . ++. .........|||..||..++..++.
T Consensus 373 ~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v 452 (944)
T KOG4307|consen 373 PSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPV 452 (944)
T ss_pred chhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchh
Confidence 888888888886542110 00 0 0 000 0112345789999999999999999
Q ss_pred HHhhcCCCCCCCeEE-EEEeecCCCCCCccEEEEEeeec
Q 016231 355 QLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 355 e~F~~~~~~~G~I~~-VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
++|... -.|+. |.|.+.| ++..++.|||.|..+
T Consensus 453 ~~f~~~----~~Ved~I~lt~~P-~~~~~~~afv~F~~~ 486 (944)
T KOG4307|consen 453 NKFMGA----AAVEDFIELTRLP-TDLLRPAAFVAFIHP 486 (944)
T ss_pred hhhhhh----hhhhheeEeccCC-cccccchhhheeccc
Confidence 999876 34555 7777775 788999999999763
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.48 E-value=0.0002 Score=59.44 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=48.5
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+||-|+|||...|.++|.+++...- .|...-+.||.|..++-+.|||||-|.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~ 55 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSP 55 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCH
Confidence 5899999999999999999996552 48999999999999999999999999764
No 126
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.47 E-value=0.00072 Score=67.75 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=99.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
..+-.|.|++|-..+++.+|.+-++.||+|.-|.++.. . -.|.|+|.+.+.|..|+.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-------~----------------r~alvefedi~~akn~Vn 85 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-------K----------------RQALVEFEDIEGAKNCVN 85 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-------c----------------ceeeeeeccccchhhhee
Confidence 34677999999999999999999999999987765221 1 279999999999999983
Q ss_pred ---hcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceee--eCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCC
Q 016231 303 ---FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVF--VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (393)
Q Consensus 303 ---lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLf--VgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~ 377 (393)
-+...+.|..-.+.++........+++.. .+...|. |-|--+.+|-+-|+.++..+ |.|..|-|.+.
T Consensus 86 faa~n~i~i~gq~Al~NyStsq~i~R~g~es~--~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkk-- 157 (494)
T KOG1456|consen 86 FAADNQIYIAGQQALFNYSTSQCIERPGDESA--TPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKK-- 157 (494)
T ss_pred hhccCcccccCchhhcccchhhhhccCCCCCC--CCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEec--
Confidence 45556777777777775443333333222 2233333 44666778999999999998 99998888766
Q ss_pred CCCCccEEEEEeee
Q 016231 378 MRVGKGIAYVLFKT 391 (393)
Q Consensus 378 tg~~kGfaFVeF~t 391 (393)
+|. .|.|+|++
T Consensus 158 ngV---QAmVEFds 168 (494)
T KOG1456|consen 158 NGV---QAMVEFDS 168 (494)
T ss_pred cce---eeEEeech
Confidence 454 69999986
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.42 E-value=0.00015 Score=71.90 Aligned_cols=49 Identities=31% Similarity=0.575 Sum_probs=43.8
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeecC
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRV 393 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~~ 393 (393)
...+|||+||...+++.+|+++|.+| |.|.+|+++.. +|.|||+|.+++
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~------~~CAFv~ftTR~ 275 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPR------KGCAFVTFTTRE 275 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecc------cccceeeehhhH
Confidence 45799999999999999999999999 99999999755 569999999863
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.38 E-value=8.8e-05 Score=75.11 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=85.6
Q ss_pred EEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcC
Q 016231 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (393)
Q Consensus 227 tVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng 305 (393)
.+|+|||.+.++..+|..+|...---.+-.++. ..|||||.+.+...|..|+ .++|
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----------------------k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----------------------KSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----------------------ecceeeccCCchhhhhhhHHhhch
Confidence 589999999999999999998642111111111 2389999999999999999 5776
Q ss_pred c-eeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEE
Q 016231 306 A-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (393)
Q Consensus 306 ~-~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI 372 (393)
. .+.|..+.|..+-+.. .-++.+-|+|+|+..-++-|..++..| |.|..|..
T Consensus 60 k~elqGkr~e~~~sv~kk-----------qrsrk~Qirnippql~wevld~Ll~qy----g~ve~~eq 112 (584)
T KOG2193|consen 60 KVELQGKRQEVEHSVPKK-----------QRSRKIQIRNIPPQLQWEVLDSLLAQY----GTVENCEQ 112 (584)
T ss_pred hhhhcCceeeccchhhHH-----------HHhhhhhHhcCCHHHHHHHHHHHHhcc----CCHhHhhh
Confidence 5 6889999998876442 234679999999999999999999999 88988865
No 129
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.21 E-value=0.0002 Score=70.54 Aligned_cols=81 Identities=32% Similarity=0.484 Sum_probs=67.0
Q ss_pred cccEEE-EeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 224 LLRTIF-VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 224 ~~rtVF-VgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++| |+||++.++.++|..+|..+|.|..++++..+ .++. ..|||||.|........++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~--~s~~---------------~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE--ESGD---------------SKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCC--Cccc---------------hhhhhhhhhhhchhHHHHhh
Confidence 345666 99999999999999999999999999986543 3333 55999999999999888885
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
.+...+.|+++.+....+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 246 DQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cccCcccCcccccccCCCC
Confidence 4677889999999887654
No 130
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.17 E-value=0.00051 Score=70.81 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=43.8
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..+|||+|||++++..+|.++|..| |.|...+|..-...+...+||||+|.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~~~~~fgFV~f~~ 339 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGGKNPCFGFVEFEN 339 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCCCcCceEEEEEee
Confidence 4569999999999999999999999 999999887654234444999999976
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.17 E-value=0.00036 Score=65.67 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=53.8
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
..+...||||.||..++||++|+.+|+.|-....++|+- ..+ +..|||+|.+.+.|..|
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g-----------------~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGG-----------------MPVAFADFEEIEQATDA 264 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCC-----------------cceEeecHHHHHHHHHH
Confidence 345568899999999999999999999998776666621 122 24899999999999999
Q ss_pred H-HhcCcee
Q 016231 301 L-AFNMAVI 308 (393)
Q Consensus 301 l-~lng~~~ 308 (393)
| .|+|..|
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 9 6887655
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.08 E-value=0.00038 Score=66.58 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=50.6
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
......+||+|+.+.+|.+++..+|+.| |.|..|.|+.|...|.++|||||+|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~C----g~i~~~ti~~d~~~~~~k~~~yvef~~ 152 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESC----GGINRVTVPKDKFRGHPKGFAYVEFSS 152 (231)
T ss_pred ccCCceEEEeccccccccchhhheeecc----CCccceeeeccccCCCcceeEEEeccc
Confidence 3356799999999999999999999999 899999999999999999999999976
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.07 E-value=6.1e-05 Score=81.70 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=108.7
Q ss_pred cEEEEeCCCccCCHH-HHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCce-EEEEeeCCHHHHHHHHHh
Q 016231 226 RTIFVGNLPLKVKKK-TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 226 rtVFVgNLp~~~tee-~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG-~AFVeF~s~e~A~~Al~l 303 (393)
+...+.|+.+..... ..+..|..+|.|..|+++.. +.. .+.+ ++++.+....+++.|...
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~-----g~k-------------~h~q~~~~~~~s~~~~~esat~p 633 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKR-----GFK-------------AHEQPQQQKVQSKHGSAESATVP 633 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccc-----ccc-------------ccccchhhhhhccccchhhcccc
Confidence 446777887777665 67788899999999987321 111 1223 889999999999999988
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCC-CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAP-LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~-~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~k 382 (393)
.+.-+.++.+.|..+.+..........+ ..-...++||.||+..+.+.+|...|..+ |.|..++|......+..|
T Consensus 634 a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~~~r 709 (881)
T KOG0128|consen 634 AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEKRFR 709 (881)
T ss_pred cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhccccc
Confidence 8999999999998886544211111110 01123589999999999999999999998 778888887666789999
Q ss_pred cEEEEEeeec
Q 016231 383 GIAYVLFKTR 392 (393)
Q Consensus 383 GfaFVeF~t~ 392 (393)
|+|||.|..+
T Consensus 710 G~~Y~~F~~~ 719 (881)
T KOG0128|consen 710 GKAYVEFLKP 719 (881)
T ss_pred cceeeEeecC
Confidence 9999999754
No 134
>PLN03213 repressor of silencing 3; Provisional
Probab=97.01 E-value=0.00082 Score=69.42 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=35.7
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCC
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg 379 (393)
...+||||||++.+++++|..+|..| |.|..|.|++. +|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpRE--TG 47 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVRT--KG 47 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEecc--cC
Confidence 45799999999999999999999999 99999999954 67
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.90 E-value=0.00099 Score=71.97 Aligned_cols=48 Identities=23% Similarity=0.570 Sum_probs=43.0
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.++|||||+|+..+++.||.++|+.| |.|.+|.++- ++|+|||....+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li~------~R~cAfI~M~~R 467 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILIP------PRGCAFIKMVRR 467 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhc----ccceeEeecc------CCceeEEEEeeh
Confidence 46899999999999999999999999 9999999853 589999997654
No 136
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.88 E-value=0.0016 Score=64.60 Aligned_cols=115 Identities=13% Similarity=0.295 Sum_probs=75.0
Q ss_pred cEEEEeCCCccCCHHH----H--HHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKT----L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 226 rtVFVgNLp~~~tee~----L--~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
.-|||-+||+.+-.++ | .++|.+||.|..|.+-+. +.+ .+...+---.||.|.+.++|..
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkk--t~s------------~nst~~h~gvYITy~~kedAar 180 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKK--TSS------------LNSTASHAGVYITYSTKEDAAR 180 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccc--ccc------------cccccccceEEEEecchHHHHH
Confidence 4599999999876555 3 369999999998877221 110 1111111234999999999999
Q ss_pred HH-HhcCceeCCeEEEEeecCCCc--ccCCCCCCCCcCCcceeeeCCCC---CCCCHHHHHHHh
Q 016231 300 AL-AFNMAVIGGNHIRLDRACPPR--KKLKGEDAPLYDIKKTVFVGNLP---FDVKDEEIYQLF 357 (393)
Q Consensus 300 Al-~lng~~~~Gr~I~V~~a~~~~--~~~~~~~~~~~~~~~tLfVgNLp---~~~teedL~e~F 357 (393)
|| +.+|..++||.|+..+..... ...+ ........+.|+.--. .+++.++|...=
T Consensus 181 cIa~vDgs~~DGr~lkatYGTTKYCtsYLR---n~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 181 CIAEVDGSLLDGRVLKATYGTTKYCTSYLR---NAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred HHHHhccccccCceEeeecCchHHHHHHHc---CCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 99 799999999999998764221 0011 1123345677766433 236788887554
No 137
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.85 E-value=0.00075 Score=63.66 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=61.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...+.++|.||+..+...+|..+|..+|.+..+.+ ..+++||+|...++|..||
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------------------------~~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------------------------RRNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------------------------hccccceeehhhhhhhhcch
Confidence 34577999999999999999999999998854443 2269999999999999999
Q ss_pred HhcCceeCCeEEEEeec
Q 016231 302 AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a 318 (393)
.|++..+.|+.|.+...
T Consensus 152 ~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 152 KLDGKKLNGRRISVEKN 168 (216)
T ss_pred hccchhhcCceeeeccc
Confidence 79999999999999444
No 138
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.79 E-value=0.0048 Score=58.17 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=62.9
Q ss_pred cCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
....+..++|+.|||..++.+.|..+|.+|.....|+++.. -.|.|||+|.+...+..
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~----------------------~~~iAfve~~~d~~a~~ 198 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP----------------------RSGIAFVEFLSDRQASA 198 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC----------------------CCceeEEecchhhhhHH
Confidence 34566899999999999999999999999998899988432 12799999999999888
Q ss_pred HH-HhcCceeC-CeEEEEeec
Q 016231 300 AL-AFNMAVIG-GNHIRLDRA 318 (393)
Q Consensus 300 Al-~lng~~~~-Gr~I~V~~a 318 (393)
|. .+++..+- ...+.|.++
T Consensus 199 a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 199 AQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HhhhhccceeccCceEEeccc
Confidence 88 68777665 666666654
No 139
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.77 E-value=0.0014 Score=62.73 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=60.1
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
....||+++||+.+...-|+++|+.||.|-.|.|-... ++ .+ .+-..+..+.+...--|+|+|.+...|..+. .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~--~s--~~-~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPED--DS--KR-AARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchh--hH--HH-HHHhhcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999883322 11 00 0000111122233345789999999999877 7
Q ss_pred hcCceeCCeE
Q 016231 303 FNMAVIGGNH 312 (393)
Q Consensus 303 lng~~~~Gr~ 312 (393)
||+..|.|+.
T Consensus 148 Lnn~~Iggkk 157 (278)
T KOG3152|consen 148 LNNTPIGGKK 157 (278)
T ss_pred hCCCccCCCC
Confidence 9999998875
No 140
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.70 E-value=0.0015 Score=66.46 Aligned_cols=83 Identities=28% Similarity=0.305 Sum_probs=64.6
Q ss_pred cCCCCcCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeee---cccCCCCCccchhhhhhcccCCCceEEEEee
Q 016231 215 EEGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV---PIIDTKIPRKGAILQKQINENADSVHAYIVF 291 (393)
Q Consensus 215 ~~~~~~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~---~~~~~~~~rkga~~~~k~~~~~srG~AFVeF 291 (393)
-..++.+.-+++||.+-|||.+-.-+.|.++|+.||.|.+|+|+.. +....+.++ ++.....+-+|+|+|
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~-------~~~~~~tk~~AlvEy 293 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPK-------KYFELQTKECALVEY 293 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCc-------cchhhhhhhhhhhhh
Confidence 4456666678999999999999999999999999999999999765 332333333 333334556899999
Q ss_pred CCHHHHHHHHHhc
Q 016231 292 KSEQSTEAALAFN 304 (393)
Q Consensus 292 ~s~e~A~~Al~ln 304 (393)
...+.|..|.++.
T Consensus 294 e~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 294 EEVEAARKARELL 306 (484)
T ss_pred hhhHHHHHHHHhh
Confidence 9999999998654
No 141
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.63 E-value=0.0013 Score=61.89 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=47.5
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeecC
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRV 393 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~~ 393 (393)
+..+||||+||...++++-|.++|-+. |.|..|.|+.+.+ +..+ ||||.|.+++
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d-~~~k-Fa~v~f~~E~ 60 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQD-QEQK-FAYVFFPNEN 60 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCcc-CCCc-eeeeeccccc
Confidence 345899999999999999999999997 9999999998864 5566 9999998874
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.54 E-value=0.0052 Score=51.72 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=34.4
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
+.|+|.+++..++-++|+.+|+.||.|.-|.+.. +. --|||.|.+.++|+.|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~------G~-----------------~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR------GD-----------------TEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T------T------------------SEEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC------CC-----------------CEEEEEECCcchHHHHH
Confidence 5689999999999999999999999988887722 11 27999999999999998
No 143
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.48 E-value=0.015 Score=48.56 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=50.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVr-i~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
.+.|.|=+.|+. ....|..+|++||.|.+.. +.+.. .+.. ............|.|.+..+|..||..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~---~~~~--------~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSS---SGIN--------PYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG---------------------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccc---cccc--------cccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 466888899988 4466778999999987664 10000 0000 000011235899999999999999999
Q ss_pred cCceeCCeEEE-Eeec
Q 016231 304 NMAVIGGNHIR-LDRA 318 (393)
Q Consensus 304 ng~~~~Gr~I~-V~~a 318 (393)
||..|.|.-|. |.++
T Consensus 74 NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp TTEEETTCEEEEEEE-
T ss_pred CCeEEcCcEEEEEEEc
Confidence 99999986554 5544
No 144
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.45 E-value=0.006 Score=44.99 Aligned_cols=52 Identities=27% Similarity=0.505 Sum_probs=41.0
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
+.|-|.+.|....+. |..+|..||+|..+.+.. ..-++||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----------------------CCcEEEEEECCHHHHHhhC
Confidence 568889998776644 555899999999988731 1138999999999999985
No 145
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.42 E-value=0.0039 Score=62.29 Aligned_cols=89 Identities=24% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.....+|||-+||..+++.+|..+|.+||.|.. + ..+..|+. .+-+.+ .++..+|-|.|.|.+...|++|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----n--K~t~kPki-~~y~dk-eT~~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKR-----N--KRTGKPKI-KIYTDK-ETGAPKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceecc-----C--CCCCCcch-hccccc-cccCcCCceeeeecChhhhhhhh
Confidence 344678999999999999999999999997532 1 12223332 122222 66778899999999999999999
Q ss_pred -HhcCceeCCeEEEEeecC
Q 016231 302 -AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~ 319 (393)
-+++..|.|..|.|..+.
T Consensus 134 ~~~agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 134 EWFAGKDFCGNTIKVSLAE 152 (351)
T ss_pred hhhccccccCCCchhhhhh
Confidence 599999999999998874
No 146
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.35 E-value=0.0043 Score=65.19 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=48.5
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
.+.|||.+|...+-..+|..||+.| |.|....++++.-+-..++||||++.+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKy----GKVvGAKVVTNaRsPGaRCYGfVTMSt 456 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKY----GKVVGAKVVTNARSPGARCYGFVTMST 456 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHh----cceeceeeeecCCCCCcceeEEEEecc
Confidence 5789999999999999999999999 999999999998888889999999875
No 147
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.01 Score=61.91 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=53.3
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs-~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.+.+|||||+||--++.++|..+|. -||.|.-+-|-+|+ .-+.|+ |-|-|.|.+..+-.+||
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~--k~KYPk---------------GaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP--KLKYPK---------------GAGRVTFSNQQAYIKAI 430 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc--ccCCCC---------------CcceeeecccHHHHHHH
Confidence 3579999999999999999999999 59999988885543 234444 89999999999999999
Q ss_pred H
Q 016231 302 A 302 (393)
Q Consensus 302 ~ 302 (393)
.
T Consensus 431 s 431 (520)
T KOG0129|consen 431 S 431 (520)
T ss_pred h
Confidence 4
No 148
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.18 E-value=0.0069 Score=44.23 Aligned_cols=31 Identities=26% Similarity=0.710 Sum_probs=25.8
Q ss_pred HHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 353 L~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+++|+.| |.|..|.+.... +|+|||+|.+.
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~-----~~~a~V~f~~~ 31 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKK-----RGFAFVEFASV 31 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTS-----TTEEEEEESSH
T ss_pred ChHHhCCc----ccEEEEEEEeCC-----CCEEEEEECCH
Confidence 68899999 999999997663 68999999874
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.18 E-value=0.021 Score=56.97 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=61.6
Q ss_pred CCcccEEEEeCCC----ccCC-------HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEe
Q 016231 222 GKLLRTIFVGNLP----LKVK-------KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIV 290 (393)
Q Consensus 222 ~~~~rtVFVgNLp----~~~t-------ee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVe 290 (393)
.+..+||.|.||= +..+ .++|.+-..+||.|.+|.+.-. ..-|.+-|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---------------------hPdGvvtV~ 320 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---------------------HPDGVVTVS 320 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---------------------CCCceeEEE
Confidence 4567999999992 2233 4566677889999999877221 133899999
Q ss_pred eCCHHHHHHHH-HhcCceeCCeEEEEeecCC
Q 016231 291 FKSEQSTEAAL-AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 291 F~s~e~A~~Al-~lng~~~~Gr~I~V~~a~~ 320 (393)
|.+.+.|..|| .|+|..|.||.|.......
T Consensus 321 f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 321 FRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred eCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 99999999999 6999999999999887653
No 150
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.17 E-value=0.013 Score=63.01 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=61.3
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I-~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
+.|-|.|+|++++-++|.+||..|-.+ .+|+|++ .+.+. -.|-|.|-|.+.+.|..|. .|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~---nd~G~---------------pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR---NDDGV---------------PTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee---cCCCC---------------cccceeEeecCHHHHHhhhhcc
Confidence 478899999999999999999999866 4455533 23343 4589999999999999998 79
Q ss_pred cCceeCCeEEEEee
Q 016231 304 NMAVIGGNHIRLDR 317 (393)
Q Consensus 304 ng~~~~Gr~I~V~~ 317 (393)
+++.|..|.|.+..
T Consensus 930 ~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRI 943 (944)
T ss_pred ccCcccceeEEEEe
Confidence 99999999988764
No 151
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.12 E-value=0.0072 Score=58.15 Aligned_cols=52 Identities=31% Similarity=0.433 Sum_probs=47.5
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+|+|.|||..++.+||+++|..| |.+..+-|..++ .|.+.|.|-|.|..+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~~-~G~s~Gta~v~~~r~ 134 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYDR-AGRSLGTADVSFNRR 134 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccCC-CCCCCccceeeecch
Confidence 3689999999999999999999999 889999999995 699999999999753
No 152
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=0.0071 Score=63.41 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=44.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..+.++|+|-|||.+++.++|+.+|+.| |+|..|+.-+. .+|.+||+|.+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t~~-----~~~~~~v~FyD 121 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRETPN-----KRGIVFVEFYD 121 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhcccc-----cCceEEEEEee
Confidence 4567899999999999999999999999 99999876444 58999999976
No 153
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.82 E-value=0.04 Score=49.01 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=52.5
Q ss_pred CCcccEEEEeCCC-----c-cCCH---HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 222 GKLLRTIFVGNLP-----L-KVKK---KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 222 ~~~~rtVFVgNLp-----~-~~te---e~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
.++..||.|.=+. . ...+ .+|...|..||.+.-||+.. |.-+|+|.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~ 78 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFR 78 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEES
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEEC
Confidence 3446788777665 1 2222 26777888999988777722 46899999
Q ss_pred CHHHHHHHHHhcCceeCCeEEEEeecCC
Q 016231 293 SEQSTEAALAFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 293 s~e~A~~Al~lng~~~~Gr~I~V~~a~~ 320 (393)
+.++|-+|+.++|..++|+.|.|..-++
T Consensus 79 dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 79 DGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp SCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred ccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 9999999999999999999999987654
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.29 E-value=0.022 Score=54.83 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=64.8
Q ss_pred HHHHHH-HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEee
Q 016231 296 STEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (393)
Q Consensus 296 ~A~~Al-~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~ 374 (393)
-|..|- +|++....|+.++|.++.. ..|||.||+.-++.+.|.+.|+.| |.|...-++.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~f----g~~e~av~~v 65 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRRF----GPIERAVAKV 65 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhhc----Cccchheeee
Confidence 345555 6999999999999999863 489999999999999999999999 8998877777
Q ss_pred cCCCCCCccEEEEEeeec
Q 016231 375 HPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 375 d~~tg~~kGfaFVeF~t~ 392 (393)
| +.+.+.|-++|.|..+
T Consensus 66 D-~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 66 D-DRGKPTREGIVEFAKK 82 (275)
T ss_pred c-ccccccccchhhhhcc
Confidence 7 5688899999999764
No 155
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.21 E-value=0.026 Score=62.20 Aligned_cols=78 Identities=29% Similarity=0.405 Sum_probs=65.4
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
.....+|||+|+.++....|...|..||.|..|.+.. +. -||||.|.+...++.|+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq-----------------~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQ-----------------PYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CC-----------------cceeeecccCccchhhHH
Confidence 4457799999999999999999999999998887721 11 39999999999999999
Q ss_pred HhcCceeCC--eEEEEeecCCCcc
Q 016231 302 AFNMAVIGG--NHIRLDRACPPRK 323 (393)
Q Consensus 302 ~lng~~~~G--r~I~V~~a~~~~~ 323 (393)
.|.|..|.| +.|+|.++..+..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCC
Confidence 688888876 7799999876543
No 156
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=95.17 E-value=0.024 Score=51.82 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=34.1
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecC
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~ 376 (393)
...||||||+..+++.||..+|..| |.|.+|-|.+.|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArnP 46 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARNP 46 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeecC
Confidence 5789999999999999999999999 899998888766
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.048 Score=57.60 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=55.6
Q ss_pred ccEEEEeCCCccC------CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 225 LRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 225 ~rtVFVgNLp~~~------tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
...|+|-|+|.-- -...|..+|+.+|+|..+.++-+. .+. ..||.|++|.+..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e---~gg---------------tkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE---EGG---------------TKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc---cCC---------------eeeEEEEEecChhhHH
Confidence 4679999998532 234677899999999888775433 222 4599999999999999
Q ss_pred HHH-HhcCceeCC-eEEEEe
Q 016231 299 AAL-AFNMAVIGG-NHIRLD 316 (393)
Q Consensus 299 ~Al-~lng~~~~G-r~I~V~ 316 (393)
.|+ .|||..|+- +...|.
T Consensus 120 ~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHhcccceecccceEEee
Confidence 999 799998865 444444
No 158
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.95 E-value=0.017 Score=61.13 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=61.1
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs-~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
....+..|||.||-.-+|.-+|+.++. .+|.|...+| +.+ +..|||.|.+.+.|.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI---------------------KShCyV~yss~eEA~a 496 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI---------------------KSHCYVSYSSVEEAAA 496 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh---------------------hcceeEecccHHHHHH
Confidence 445678899999999999999999999 5777776644 221 1489999999999988
Q ss_pred HH-HhcCcee---CCeEEEEeecC
Q 016231 300 AL-AFNMAVI---GGNHIRLDRAC 319 (393)
Q Consensus 300 Al-~lng~~~---~Gr~I~V~~a~ 319 (393)
-. +|||..| +++.|.+.+..
T Consensus 497 tr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 497 TREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHHHhccccCCCCCceeEeeecc
Confidence 88 7999987 57888888763
No 159
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.69 E-value=0.081 Score=51.91 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=51.5
Q ss_pred HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCceeCCeEEEEee
Q 016231 239 KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (393)
Q Consensus 239 ee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~V~~ 317 (393)
++++.+.+.+||.|..|.|..++...... ..-.||+|...++|..|+ .|||..|+||.++.++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~de----------------avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDE----------------AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccch----------------hheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45778889999999999886665322211 135899999999999998 7999999999998877
Q ss_pred cC
Q 016231 318 AC 319 (393)
Q Consensus 318 a~ 319 (393)
..
T Consensus 364 yn 365 (378)
T KOG1996|consen 364 YN 365 (378)
T ss_pred cc
Confidence 53
No 160
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=94.61 E-value=0.032 Score=60.23 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=45.5
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecC---CCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~---~tg~~kGfaFVeF~t~ 392 (393)
.++.|||+||++.++++.|...|..| |.|.+|+|+.-. .....+.+|||-|-++
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR 229 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNR 229 (877)
T ss_pred cccceeeecCCccccHHHHHHHhccc----Ccccceeeecccchhhhccccccceeeehhh
Confidence 46789999999999999999999999 999999987654 2334577999999764
No 161
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.07 E-value=0.14 Score=47.39 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=51.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
....|.|.+||+..+.++|+.+....|.|.-..+-++ |++.|+|...+++..|+ .
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------------------------g~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------------------------GVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------------------------cceeeeeeehhhHHHHHHh
Confidence 3467999999999999999999999999876655221 69999999999999999 6
Q ss_pred hcCcee
Q 016231 303 FNMAVI 308 (393)
Q Consensus 303 lng~~~ 308 (393)
|+.+.+
T Consensus 170 ld~~~~ 175 (241)
T KOG0105|consen 170 LDDQKF 175 (241)
T ss_pred hccccc
Confidence 776655
No 162
>PLN03120 nucleic acid binding protein; Provisional
Probab=93.99 E-value=0.042 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=25.0
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCC
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLND 362 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~ 362 (393)
.++|||+|||+.+++++|+++|+.||.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~ 30 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGD 30 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999999999973
No 163
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.93 E-value=0.044 Score=54.86 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=57.4
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCC--eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGE--IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~--I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~- 302 (393)
-.+|||||-|++|+++|.+.+...|- +..+++-. .. ..|+++|||+|...+..++..-|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE-----NR------------~NGQSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE-----NR------------TNGQSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh-----cc------------cCCcccceEEEEecchHHHHHHHHh
Confidence 45999999999999999999998883 23333311 11 135788999999999998888884
Q ss_pred hcCceeCCeEEEEeec
Q 016231 303 FNMAVIGGNHIRLDRA 318 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a 318 (393)
|-...|.|..-.|..+
T Consensus 144 LP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 144 LPTKTIHGQSPTVLSY 159 (498)
T ss_pred cccceecCCCCeeecc
Confidence 7777888877666554
No 164
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.87 E-value=0.063 Score=49.28 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=46.4
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcc-cCCee---EEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIK-FGEID---SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~-~G~I~---sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
...|.|++||+++|+++++..++. ++... .+.-.. +...... ....-|||.|.+.+++..-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~-~~~~~~~--------------~~~SRaYi~F~~~~~~~~F 71 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKY-GKKSFKP--------------PTYSRAYINFKNPEDLLEF 71 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEE-S-SSSTT--------------S--EEEEEEESSCHHHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCC-CCccCCC--------------CcceEEEEEeCCHHHHHHH
Confidence 568999999999999999998887 66542 222100 0000011 1235799999999998777
Q ss_pred H-HhcCceeCC-----eEEEEeecC
Q 016231 301 L-AFNMAVIGG-----NHIRLDRAC 319 (393)
Q Consensus 301 l-~lng~~~~G-----r~I~V~~a~ 319 (393)
+ .++|..|.+ ....|.+|.
T Consensus 72 ~~~~~g~~F~D~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 72 RDRFDGHVFVDSKGNEYPAVVEFAP 96 (176)
T ss_dssp HHHCTTEEEE-TTS-EEEEEEEE-S
T ss_pred HHhcCCcEEECCCCCCcceeEEEcc
Confidence 7 688887732 334455553
No 165
>PLN03121 nucleic acid binding protein; Provisional
Probab=93.69 E-value=0.059 Score=51.72 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=25.7
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCC
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLND 362 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~ 362 (393)
..++|||+||++.+|+++|+++|+.||.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~ 31 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGA 31 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999999999973
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.58 E-value=0.3 Score=39.61 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=37.7
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
+..||+ .|......||..+|+.||.|. |.++.+ .-|||.....+.|..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------------------------TSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------------------------TSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------------------------TEEEEEECCCHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------------------------CcEEEEeecHHHHHHHHH
Confidence 445555 999999999999999999976 666332 269999999999999883
No 167
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.17 E-value=0.12 Score=43.45 Aligned_cols=46 Identities=26% Similarity=0.246 Sum_probs=29.9
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..|+|.+++..++.++|+++|+.| |.|.+|.+.+.. ..|||-|.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G~------~~g~VRf~~~ 47 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRGD------TEGYVRFKTP 47 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-------SEEEEEESS-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCCC------CEEEEEECCc
Confidence 368899999999999999999999 899999986652 3789999874
No 168
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.16 E-value=0.034 Score=55.60 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=46.2
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..++|||||-|-+|++||.+.+...+. ..|..+.+.-+..+|.++|||.|...+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~--~~~~dmKFFENR~NGQSKG~AL~~~~S 133 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGL--AQFADMKFFENRTNGQSKGYALLVLNS 133 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhH--HHHhhhhhhhcccCCcccceEEEEecc
Confidence 468999999999999999999987743 467778888888899999999998654
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.15 E-value=0.041 Score=52.95 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=48.4
Q ss_pred HHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCceeCCeEEEEee
Q 016231 240 KTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (393)
Q Consensus 240 e~L~~~Fs-~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~V~~ 317 (393)
++|...|. +||+|.++.+.... +. .-.|-+||.|...++|++|+ .||+..|.|++|.+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl----~~--------------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL----GD--------------HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc----ch--------------hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 45555566 89999988664322 11 13478999999999999999 7999999999999988
Q ss_pred cC
Q 016231 318 AC 319 (393)
Q Consensus 318 a~ 319 (393)
+.
T Consensus 145 ~p 146 (260)
T KOG2202|consen 145 SP 146 (260)
T ss_pred cC
Confidence 63
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.73 E-value=0.71 Score=35.29 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=40.9
Q ss_pred cEEEEeCCCccCCHHHHHHHhccc----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~----G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..|+|+|+. +++.++|..+|..| ++ ..|.|+-+. -|-|.|.+...|..||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt------------------------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT------------------------SCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC------------------------cEEEEECCHHHHHHHH
Confidence 469999994 57889999999998 54 567775443 5899999999999998
No 171
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.94 E-value=0.2 Score=40.89 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=47.0
Q ss_pred EEEeeCCHHHHHHHHHh--cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhh
Q 016231 287 AYIVFKSEQSTEAALAF--NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (393)
Q Consensus 287 AFVeF~s~e~A~~Al~l--ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~ 358 (393)
|.|+|....-|+..+.+ +...+++..+.|............-........++|.|.|||..+.+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999998853 3445666666665442111100000011233568999999999999999988764
No 172
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.53 E-value=0.96 Score=40.32 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=53.5
Q ss_pred CCcccEEEEeCCCccC----CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 222 GKLLRTIFVGNLPLKV----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~----tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
+.+-.||.|+=|..++ +-..+...++.||+|.+|.+. |. --|.|.|.+..+|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------Gr-----------------qsavVvF~d~~SA 138 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GR-----------------QSAVVVFKDITSA 138 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CC-----------------ceEEEEehhhHHH
Confidence 3456788887555443 444566677889999999872 11 2699999999999
Q ss_pred HHHHHhcCceeCCeEEEEeecC
Q 016231 298 EAALAFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 298 ~~Al~lng~~~~Gr~I~V~~a~ 319 (393)
-.|+..-+....|..+.+.|-.
T Consensus 139 C~Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 139 CKAVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred HHHHHhhcCCCCCceEEeeccc
Confidence 9999433446778888887753
No 173
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=89.34 E-value=0.62 Score=34.24 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=35.0
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.|-|.|.+++.. +.|..+|..| |.|..+.+.. ...+.||.|.++
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~f----GeI~~~~~~~------~~~~~~l~y~~~ 46 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASF----GEIVDIYVPE------STNWMYLKYKSR 46 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhc----CCEEEEEcCC------CCcEEEEEECCH
Confidence 5788889988766 4466688889 9999999862 244899999875
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=88.47 E-value=0.79 Score=47.25 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=35.0
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d 375 (393)
-+.++|.+-|||.+-.-+.|.+||..| |.|.+|||..-
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckP 266 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKP 266 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCC
Confidence 367999999999999999999999999 99999999766
No 175
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.07 E-value=0.43 Score=48.63 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=43.5
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCC---CCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~---tg~~kGfaFVeF~t~ 392 (393)
..|.|.||.+++|.++++.||... |.|..++|+.... .......|||.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~ 62 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDSKIPVISRTCYVKFLDS 62 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCccCcceeeeEEEeccCC
Confidence 489999999999999999999988 9999999977442 234567999999764
No 176
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.37 E-value=0.13 Score=55.32 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=77.7
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...-+|||||+...+..+-+...+..||.|-++.. + -|+|..|........|+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--~------------------------~fgf~~f~~~~~~~ra~r 91 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--D------------------------KFGFCEFLKHIGDLRASR 91 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh--h------------------------hhcccchhhHHHHHHHHH
Confidence 34678999999999999999999999998765433 1 18999999999998888
Q ss_pred HhcCceeCCeEEEEeecC----CCcccC--CCCCCCCcC---CcceeeeCCCCCCCCHHHHHHHhhcC
Q 016231 302 AFNMAVIGGNHIRLDRAC----PPRKKL--KGEDAPLYD---IKKTVFVGNLPFDVKDEEIYQLFCGL 360 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~----~~~~~~--~~~~~~~~~---~~~tLfVgNLp~~~teedL~e~F~~~ 360 (393)
.++...++|..+.+..-. .+.+.. ......... ..+-++|+|+|..+........|..-
T Consensus 92 ~~t~~~~~~~kl~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 92 LLTELNIDDQKLIENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred HhcccCCCcchhhccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 567777778777665521 000000 000011111 14678999999988888777777654
No 177
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.77 E-value=0.36 Score=50.22 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=59.1
Q ss_pred ccEEEEeCCCccC-CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 225 LRTIFVGNLPLKV-KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~-tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
.+.|-+.-.|+.. |-.+|..+|.+||.|..|.+...+ -.|.|+|.+..+|-.|...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----------------------~~a~vTF~t~aeag~a~~s 428 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----------------------LHAVVTFKTRAEAGEAYAS 428 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----------------------hhheeeeeccccccchhcc
Confidence 4555566666664 568999999999999998872211 2699999999999888889
Q ss_pred cCceeCCeEEEEeecCC
Q 016231 304 NMAVIGGNHIRLDRACP 320 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~ 320 (393)
++..|+||.|.|.|..+
T Consensus 429 ~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 429 HGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccceecCceeEEEEecC
Confidence 99999999999999876
No 178
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=86.67 E-value=0.57 Score=47.16 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=47.4
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeE--------EEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~--------~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...+|||-+||..++..+|.++|.+| |.|. -|.|.+|..|+.++|-|-|.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~ 126 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDP 126 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhccccccccCcCCceeeeecCh
Confidence 35699999999999999999999999 6664 377888989999999999999874
No 179
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.13 E-value=2.3 Score=42.18 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=52.4
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhcC
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNM 305 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~lng 305 (393)
.-|-|-++|+... ..|..+|..||.|..+... ++| -+-+|.|.+.-+|++||..||
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~----------~ng-------------NwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP----------SNG-------------NWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC----------CCC-------------ceEEEEecchhHHHHhhhhcC
Confidence 4466668887755 4566789999999876541 111 389999999999999999999
Q ss_pred ceeCCeE-EEEeecC
Q 016231 306 AVIGGNH-IRLDRAC 319 (393)
Q Consensus 306 ~~~~Gr~-I~V~~a~ 319 (393)
++|+|.. |-|..|.
T Consensus 254 ~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 254 TIIDGDVMIGVKPCT 268 (350)
T ss_pred eeeccceEEeeeecC
Confidence 9998855 4566654
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.11 E-value=0.36 Score=48.19 Aligned_cols=81 Identities=16% Similarity=0.363 Sum_probs=58.0
Q ss_pred ccEEEEeCCCccCCHHHHH---HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 225 LRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~---~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..-+||-+|+.....+.+. ++|.+||.|..|.+-+++.. .. . .+ ...-+||+|...++|..||
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~--~s-~----------~~-~~~s~yITy~~~eda~rci 142 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS--SS-S----------SG-GTCSVYITYEEEEDADRCI 142 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc--cc-C----------CC-CCCcccccccchHhhhhHH
Confidence 3558999999886555443 48999999999988554310 00 0 00 1123899999999999999
Q ss_pred -HhcCceeCCeEEEEeecC
Q 016231 302 -AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~ 319 (393)
..+|..+.|+.+......
T Consensus 143 ~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 143 DDVDGFVDDGRALKASLGT 161 (327)
T ss_pred HHhhhHHhhhhhhHHhhCC
Confidence 699999999987766654
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.72 E-value=8.7 Score=32.64 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=45.6
Q ss_pred cEEEEeCCCccCCHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~-G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+-+...|+-++-++|..+.+.+ ..|..++|+++.. .++-.+.+.|.+..+|.... .+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-------------------pnrymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-------------------PNRYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-------------------CceEEEEEEECCHHHHHHHHHHh
Confidence 344445555556666676555554 4577888876532 14468999999999999988 79
Q ss_pred cCceeCC
Q 016231 304 NMAVIGG 310 (393)
Q Consensus 304 ng~~~~G 310 (393)
||..|+.
T Consensus 75 NGk~Fns 81 (110)
T PF07576_consen 75 NGKPFNS 81 (110)
T ss_pred CCCccCC
Confidence 9988753
No 182
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=83.05 E-value=1.5 Score=42.41 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=47.9
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
..|||.||+.-+.-+.|..-|+.||+|....+.-+. .++..|-++|.|...-.+..|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~------------------r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD------------------RGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc------------------cccccccchhhhhcchhHHHHHH
Confidence 569999999999999999999999999765553322 12355789999999999999984
No 183
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.72 E-value=1.6 Score=38.05 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=60.2
Q ss_pred eEEEEeeCCHHHHHHHHHhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCC-CCHHHHHHHhhcCCCC
Q 016231 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDL 363 (393)
Q Consensus 285 G~AFVeF~s~e~A~~Al~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~-~teedL~e~F~~~~~~ 363 (393)
|+..+.|.+.+++..++......+.|..+.+..-.+...... .......--|-|.|||.. ++++-|..+-+.+
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~i--- 129 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSE---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKI--- 129 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccc---cceeccchhhhhccCCHHHhhhHHHHHHHHhc---
Confidence 699999999999999998777888888888876653211110 001112234677799998 6788888998888
Q ss_pred CCCeEEEEEeec
Q 016231 364 ESSVEAVRVIRH 375 (393)
Q Consensus 364 ~G~I~~VrI~~d 375 (393)
|.+..+.....
T Consensus 130 -G~~i~vD~~t~ 140 (153)
T PF14111_consen 130 -GEPIEVDENTL 140 (153)
T ss_pred -CCeEEEEcCCC
Confidence 89988876443
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.26 E-value=8 Score=40.39 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=57.1
Q ss_pred ccEEEEeCCCccCCHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~-G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
+..|+|-.+|..+|-.||..|+..+ -.|.+|+|+++... ++-.+.|.|.+..+|..-. .
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 7889999999999999999999875 56899999886532 3357999999999999988 7
Q ss_pred hcCceeCC
Q 016231 303 FNMAVIGG 310 (393)
Q Consensus 303 lng~~~~G 310 (393)
+||..|+.
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99998864
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.96 E-value=4.5 Score=37.47 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=42.2
Q ss_pred CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc--CceeCCeEEE
Q 016231 238 KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN--MAVIGGNHIR 314 (393)
Q Consensus 238 tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln--g~~~~Gr~I~ 314 (393)
....|+.+|..|+.+.+..+.. +-+-..|.|.+.+.|..|. .|+ +..+.|..++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----------------------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----------------------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----------------------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----------------------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 3578999999999887765522 2246899999999999998 688 8999999999
Q ss_pred EeecCC
Q 016231 315 LDRACP 320 (393)
Q Consensus 315 V~~a~~ 320 (393)
|.++..
T Consensus 65 ~yf~~~ 70 (184)
T PF04847_consen 65 VYFGQP 70 (184)
T ss_dssp EE----
T ss_pred EEEccc
Confidence 988743
No 186
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=78.01 E-value=3.2 Score=44.34 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=40.0
Q ss_pred ceeeeCCCCCCCC------HHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 337 KTVFVGNLPFDVK------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 337 ~tLfVgNLp~~~t------eedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..|+|.|+|.--. ..-|..+|+.+ |.|..+.++.++.+| ++||.|++|.+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~----gk~vn~~~P~~e~gg-tkG~lf~E~~~ 114 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKA----GKIVNMYYPIDEEGG-TKGYLFVEYAS 114 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhh----ccccceeeccCccCC-eeeEEEEEecC
Confidence 5788888875321 23466889998 999999999998755 99999999986
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=77.66 E-value=1.7 Score=39.82 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=29.9
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhc-CCCCCCCe---EEEE--EeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSV---EAVR--VIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~-~~~~~G~I---~~Vr--I~~d~~tg~~kGfaFVeF~t~ 392 (393)
...|.|++||+++|++++.+.+.. + |.. ..+. +...+..-..-.-|||.|.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l----~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~ 65 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWL----PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNP 65 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS------SSE---EEEEEEES-SSSTTS--EEEEEEESSC
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhc----ccccceEEEecCCCCccCCCCcceEEEEEeCCH
Confidence 468999999999999999998777 4 333 2333 111111111234689999763
No 188
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=75.12 E-value=3.2 Score=40.27 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=33.9
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t 378 (393)
..||++|||+.+.-.-|+++|..| |.|-.|.|.....+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s 112 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDS 112 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhH
Confidence 589999999999999999999999 99999988766544
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=74.06 E-value=8.3 Score=31.39 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=29.7
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...||+ +|..|...||.++|+.| |.| .|.++-|- -|||....+
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf----G~I-~VsWi~dT-------SAfV~l~~r 52 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF----GQI-YVSWINDT-------SAFVALHNR 52 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC----CCE-EEEEECTT-------EEEEEECCC
T ss_pred eEEEEe-CchHhhhhhHHHHhccC----CcE-EEEEEcCC-------cEEEEeecH
Confidence 355666 99999999999999999 776 57776662 589987654
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=67.75 E-value=10 Score=40.69 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=52.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcc--cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIK--FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~--~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
...|.|.|+-||..+-.++|+.+|.. |-.+.+|.+-... -=||+|.+..+|+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------------------------nWyITfesd~DAQqA 228 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------------------------NWYITFESDTDAQQA 228 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------------------------ceEEEeecchhHHHH
Confidence 34688999999999999999999985 8888888872211 359999999999999
Q ss_pred HH-hc--CceeCCeEEEE
Q 016231 301 LA-FN--MAVIGGNHIRL 315 (393)
Q Consensus 301 l~-ln--g~~~~Gr~I~V 315 (393)
.. |. -..|.|+.|..
T Consensus 229 ykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 229 YKYLREEVKTFQGKPIMA 246 (684)
T ss_pred HHHHHHHHHhhcCcchhh
Confidence 73 32 34567766643
No 191
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=67.24 E-value=9.2 Score=31.26 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=26.4
Q ss_pred ceeeeCCCCCCCCHHH----HHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teed----L~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..|||.|||.+.+... |++++..|| |.|..|. .|-|+|-|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG---GkVl~v~----------~~tAilrF~~~ 49 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG---GKVLSVS----------GGTAILRFPNQ 49 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT-----EEE------------TT-EEEEESSH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC---CEEEEEe----------CCEEEEEeCCH
Confidence 3699999999988655 567888995 8887662 25688988763
No 192
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.92 E-value=19 Score=38.89 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCcccEEEEeCCCcc-CCHHHHHHHhccc----CCeeEEEEeeeccc-------CCCCC-ccc-----------------
Q 016231 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKF----GEIDSVRIRSVPII-------DTKIP-RKG----------------- 271 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~-~tee~L~~~Fs~~----G~I~sVri~~~~~~-------~~~~~-rkg----------------- 271 (393)
....+.|-|-||.|+ +...+|..+|..| |.|.+|.|....+. ....| +..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345788999999998 7889999999986 58888887432210 00011 000
Q ss_pred -hhhh----hhcccCCCceEEEEeeCCHHHHHHHH-HhcCceeCCeEEEEee
Q 016231 272 -AILQ----KQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (393)
Q Consensus 272 -a~~~----~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~V~~ 317 (393)
.++. ..+-...-.-||.|+|.+.+.|.+.. ..+|..|......+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0000 00111123358999999999999888 6889988765555544
No 193
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=66.64 E-value=27 Score=26.99 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=41.7
Q ss_pred cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCceeCCeEEE
Q 016231 236 KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIR 314 (393)
Q Consensus 236 ~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~ 314 (393)
.++-++|+..+..|+- ..|+. +. .| -||.|.+..+|+.|. ..+|..+.+..|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5778999999999984 33433 22 14 499999999999999 6888888887765
Q ss_pred E
Q 016231 315 L 315 (393)
Q Consensus 315 V 315 (393)
+
T Consensus 65 M 65 (66)
T PF11767_consen 65 M 65 (66)
T ss_pred e
Confidence 4
No 194
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=66.35 E-value=3.8 Score=45.71 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=58.9
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+.++-|.+...+--.|..+|++||.|.+++..++- -.|.|.|.+.+.|..|+ ++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----------------------N~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----------------------NMALVSFSSVESAILALDAL 354 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc-----------------------cchhhhhHHHHHHHHhhhhh
Confidence 3445666777788889999999999999999875542 37999999999999999 79
Q ss_pred cCcee--CCeEEEEeecCC
Q 016231 304 NMAVI--GGNHIRLDRACP 320 (393)
Q Consensus 304 ng~~~--~Gr~I~V~~a~~ 320 (393)
+|..+ .|-+.+|..+..
T Consensus 355 ~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 355 QGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cCCcccccCCceeEEeccc
Confidence 98854 677888887753
No 195
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.62 E-value=15 Score=38.01 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=50.0
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I-~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
..+.|=|.++|....-+||...|..||.- -.|.|+-+. +||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------------------------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------------------------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------------------------eeEEeecchHHHHHHhh
Confidence 56889999999999889999999998752 345553332 89999999999999998
Q ss_pred hcCceeCCeE
Q 016231 303 FNMAVIGGNH 312 (393)
Q Consensus 303 lng~~~~Gr~ 312 (393)
+...++.-|.
T Consensus 446 ~kh~~lKiRp 455 (528)
T KOG4483|consen 446 LKHDWLKIRP 455 (528)
T ss_pred ccCceEEeee
Confidence 7555544343
No 196
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=61.55 E-value=12 Score=37.12 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=36.8
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I-~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e 295 (393)
...-|||+|||.++.-.+|+..+...|-+ .++.| +| ++|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------------kg-----------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------------KG-----------HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------------ec-----------CCcceeEecCCcc
Confidence 34559999999999999999999987743 33333 11 5578999998753
No 197
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=51.04 E-value=22 Score=27.55 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=33.0
Q ss_pred ccCCHHHHHHHhcccC-----CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCcee
Q 016231 235 LKVKKKTLIKEFIKFG-----EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVI 308 (393)
Q Consensus 235 ~~~tee~L~~~Fs~~G-----~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~ 308 (393)
..++..+|..++...+ .|-.|+|.. -|+||+-... .|..++ .|++..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------------------------~~S~vev~~~-~a~~v~~~l~~~~~ 64 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------------------------NFSFVEVPEE-VAEKVLEALNGKKI 64 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------------------------S-EEEEE-TT--HHHHHHHHTT--S
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-------------------------eEEEEEECHH-HHHHHHHHhcCCCC
Confidence 3478888888888764 345566611 2899998865 566777 7999999
Q ss_pred CCeEEEEeec
Q 016231 309 GGNHIRLDRA 318 (393)
Q Consensus 309 ~Gr~I~V~~a 318 (393)
.|+.|.|..|
T Consensus 65 ~gk~v~ve~A 74 (74)
T PF03880_consen 65 KGKKVRVERA 74 (74)
T ss_dssp SS----EEE-
T ss_pred CCeeEEEEEC
Confidence 9999999764
No 198
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=44.24 E-value=43 Score=28.99 Aligned_cols=114 Identities=24% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCc--eeC
Q 016231 233 LPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMA--VIG 309 (393)
Q Consensus 233 Lp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~--~~~ 309 (393)
||+-++ .|-++|..-|.|.+|..++. .+ + ..|+ .++|. .++
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq------yp------------------------d----ndal~~~~G~lE~vD 54 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ------YP------------------------D----NDALLYVHGTLEQVD 54 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec------cC------------------------C----chhhheeeeehhhcc
Confidence 777765 48899999999998865321 11 1 1132 45554 244
Q ss_pred CeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEe
Q 016231 310 GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLF 389 (393)
Q Consensus 310 Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF 389 (393)
|. |++.....+..-. ....+ .....+| -|..+|-.+|+++|..-.. +--|+.-.+.+|.--..+-..||..|
T Consensus 55 g~-i~IGs~q~~~sV~-i~gTP--sgnnv~F---~PYTlT~~e~r~iF~Epm~-YQGITReQV~rdGLP~GsYRiCFrL~ 126 (145)
T TIGR02542 55 GN-IRIGSGQTPASVR-IQGTP--SGNNVIF---PPYTLTYNELRQIFREPMV-YQGITREQVQRDGLPEGSYRICFRLF 126 (145)
T ss_pred Cc-EEEccCCCcccEE-EecCC--CCCceec---CceeeeHHHHHHHHhhhhh-hccccHHHHhhcCCCCCceEEEEEEe
Confidence 54 6665543221100 00000 0112333 4778999999999975321 23355555666633333445788877
Q ss_pred e
Q 016231 390 K 390 (393)
Q Consensus 390 ~ 390 (393)
.
T Consensus 127 ~ 127 (145)
T TIGR02542 127 N 127 (145)
T ss_pred c
Confidence 4
No 199
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=44.01 E-value=9.1 Score=41.28 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=38.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
...++.|||.||=..+|.-+|+.++..-+ |.|+.. +.|. -+.-|||.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtg---g~Vee~--WmDk----IKShCyV~yss 490 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTG---GNVEEF--WMDK----IKSHCYVSYSS 490 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhcc---CchHHH--HHHH----hhcceeEeccc
Confidence 44678999999999999999999998542 777766 4443 35579999976
No 200
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.49 E-value=39 Score=33.40 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=36.4
Q ss_pred cCCcceeeeCCCCCCC------------CHHHHHHHhhcCCCCCCCeEEEEEee-cC----CCCCCccEEEEE
Q 016231 333 YDIKKTVFVGNLPFDV------------KDEEIYQLFCGLNDLESSVEAVRVIR-HP----HMRVGKGIAYVL 388 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~------------teedL~e~F~~~~~~~G~I~~VrI~~-d~----~tg~~kGfaFVe 388 (393)
.+-..|||+.+||..| +++-|+..|..| |.|..|.|+. || -+|...|+-|-.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf----g~ir~vdipicdplr~~mn~kisgiq~~g 214 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF----GEIRNVDIPICDPLREEMNGKISGIQFHG 214 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHh----ccceecCCcccchhHHHhcCccccceeec
Confidence 3445799999998654 467799999999 9999999865 33 245544444433
No 201
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=39.77 E-value=37 Score=33.69 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=35.1
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..-|||+|||.++--.||+..+...+ ....++.+ .| +.|-||+.|.++
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~---~~pm~isw-----kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRE---CTPMSISW-----KG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcC---CCceeEee-----ec-CCcceeEecCCc
Confidence 35699999999999999998887751 22333333 23 578899999764
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=37.08 E-value=1.4e+02 Score=25.28 Aligned_cols=53 Identities=11% Similarity=0.234 Sum_probs=37.7
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....+.+..+|..++-++|..+...+. ..|..+||++|.. .++-.+.+.|.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~---~~i~~~riird~~--pnrymVLikF~~~ 64 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFR---EDIEHIRIIRDGT--PNRYMVLIKFRDQ 64 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhccc---ccEEEEEEeeCCC--CceEEEEEEECCH
Confidence 345566666677777778877777763 6799999999843 3566788888763
No 203
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.65 E-value=49 Score=35.18 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=46.0
Q ss_pred EEEeCCCccCC---HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceE-EEEeeCCHHHHHHHHHh
Q 016231 228 IFVGNLPLKVK---KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAALAF 303 (393)
Q Consensus 228 VFVgNLp~~~t---ee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~-AFVeF~s~e~A~~Al~l 303 (393)
=+||||+.-.. ...|..+=.+||+|..+++ |. -.|..++.+.|..|+.-
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l---------------------------G~~~~Vviss~~~akE~l~~ 87 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL---------------------------GSVPVVVISSYEAAKEVLVK 87 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEe---------------------------cCceEEEECCHHHHHHHHHh
Confidence 46888875443 3456666668999998888 22 48888999999999988
Q ss_pred cCceeCCeEE
Q 016231 304 NMAVIGGNHI 313 (393)
Q Consensus 304 ng~~~~Gr~I 313 (393)
|+..|.+|+.
T Consensus 88 ~d~~fa~Rp~ 97 (489)
T KOG0156|consen 88 QDLEFADRPD 97 (489)
T ss_pred CCccccCCCC
Confidence 8999999886
No 204
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=33.60 E-value=52 Score=28.11 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=30.6
Q ss_pred EEEEeCCCcc---------CCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHH-
Q 016231 227 TIFVGNLPLK---------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS- 296 (393)
Q Consensus 227 tVFVgNLp~~---------~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~- 296 (393)
++.|-|+|.. ++-+.|...|+.|.++. |+....+ .-++|++.|.|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCChHH
Confidence 4667777654 35578999999999865 5554432 1167999999987543
Q ss_pred HHHHHHhc
Q 016231 297 TEAALAFN 304 (393)
Q Consensus 297 A~~Al~ln 304 (393)
...|++|+
T Consensus 70 f~~A~~l~ 77 (116)
T PF03468_consen 70 FKNAMRLE 77 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34566544
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.53 E-value=64 Score=32.17 Aligned_cols=158 Identities=12% Similarity=0.204 Sum_probs=88.6
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.-..|.|.+.||...++-..+...|..||+|++|.++.... .+. +....-.....+.+.|-+.+.+-.-.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~----~~~------d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSND----KPS------DDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCC----ccc------ccccccccceEEEEeeechHHHHHHH
Confidence 34468899999999999999999999999999999955431 111 01112234457888898877654332
Q ss_pred -----Hhc--CceeCCeEEEEeecCCCcccCC--CCC---------------CCCcCCcceeeeCCCCCCCCHHHH-HHH
Q 016231 302 -----AFN--MAVIGGNHIRLDRACPPRKKLK--GED---------------APLYDIKKTVFVGNLPFDVKDEEI-YQL 356 (393)
Q Consensus 302 -----~ln--g~~~~Gr~I~V~~a~~~~~~~~--~~~---------------~~~~~~~~tLfVgNLp~~~teedL-~e~ 356 (393)
+|. .+.+....|.+.+.+-...... .++ --....+|.|.|- +...+..++| ...
T Consensus 82 NnvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~k 160 (309)
T PF10567_consen 82 NNVLQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKK 160 (309)
T ss_pred HHHHHHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHh
Confidence 121 2345566666665542111100 000 0012345677766 3344434443 222
Q ss_pred hhcCCCCCC----CeEEEEEeecC--CCCCCccEEEEEeee
Q 016231 357 FCGLNDLES----SVEAVRVIRHP--HMRVGKGIAYVLFKT 391 (393)
Q Consensus 357 F~~~~~~~G----~I~~VrI~~d~--~tg~~kGfaFVeF~t 391 (393)
+ +|-...+ .|++|.|+.-. ...-+..||.++|-+
T Consensus 161 L-~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFln 200 (309)
T PF10567_consen 161 L-PFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLN 200 (309)
T ss_pred h-hhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehh
Confidence 2 1110012 57888887643 223457799999853
No 206
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.30 E-value=50 Score=33.94 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=46.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
...|.|.+||+..++.+|.+.+..|- ..+.+......+.+.. ..-.+.|||.|...+++..-. .+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~--~~v~~~~F~~a~~s~~------------~~~ysrayinFk~~~dv~ef~~~f 72 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFP--EHVNWEFFAKADESLR------------NHKYSRAYINFKNPEDVEEFRRRF 72 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCc--cccchheeccccccch------------hhhhhhhhhccccHHHHHHHHhhC
Confidence 56799999999999999998888754 2333322111111110 112578999999999966655 47
Q ss_pred cCcee
Q 016231 304 NMAVI 308 (393)
Q Consensus 304 ng~~~ 308 (393)
+|.+|
T Consensus 73 ~g~if 77 (376)
T KOG1295|consen 73 DGYIF 77 (376)
T ss_pred CceEE
Confidence 77665
No 207
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.92 E-value=71 Score=34.65 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=36.5
Q ss_pred cCCcceeeeCCCCCC-CCHHHHHHHhhcCCCCCCCeEEEEEeec
Q 016231 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRH 375 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~-~teedL~e~F~~~~~~~G~I~~VrI~~d 375 (393)
...+++|-|-||.|+ +...||.-+|..|....|.|.+|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 446789999999998 6889999999999766689999998654
No 208
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.33 E-value=42 Score=32.44 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEE
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri 257 (393)
....+++|+-|||...|++.|..+.+.+|-+..+.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 445688999999999999999999999996655443
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=29.21 E-value=23 Score=38.76 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=37.4
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..+..+|||+|+...+..+-++.+...| |.|.++..+. |||..|..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~---------fgf~~f~~ 82 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK---------FGFCEFLK 82 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh---------hcccchhh
Confidence 3456799999999999999999999998 8887765533 88888864
No 210
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=26.44 E-value=41 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 348 ~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
++.+.|.+.|..| ..+ .|+.+.++. .+.|++.|.|..
T Consensus 29 ~~~~~l~~~l~~f----~p~-kv~~l~~~~--gh~g~aiv~F~~ 65 (116)
T PF03468_consen 29 MSNEELLDKLAEF----NPL-KVKPLYGKQ--GHTGFAIVEFNK 65 (116)
T ss_dssp --SHHHHHHHHH-------S-EEEEEEETT--EEEEEEEEE--S
T ss_pred cCHHHHHHHHHhc----CCc-eeEECcCCC--CCcEEEEEEECC
Confidence 3568899999998 444 455555542 478999999964
No 211
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=25.00 E-value=57 Score=32.31 Aligned_cols=34 Identities=38% Similarity=0.541 Sum_probs=27.7
Q ss_pred ccEEEEeCCCcc------------CCHHHHHHHhcccCCeeEEEEe
Q 016231 225 LRTIFVGNLPLK------------VKKKTLIKEFIKFGEIDSVRIR 258 (393)
Q Consensus 225 ~rtVFVgNLp~~------------~tee~L~~~Fs~~G~I~sVri~ 258 (393)
..|||+.+||-. -++.-|+..|..||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 468999999854 2578899999999999888774
No 212
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=20.27 E-value=1.4e+02 Score=24.82 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=30.2
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEE-EeecC------CCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHP------HMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~Vr-I~~d~------~tg~~kGfaFVeF~t~ 392 (393)
...|.|-+.|+. .-..|.+.|+.| |.|.... +.++. ........-.|+|.++
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~ 64 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNP 64 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSH
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCH
Confidence 456888899988 456788899999 8998775 11110 0011345788888775
Done!