Query 016231
Match_columns 393
No_of_seqs 307 out of 2164
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 6.3E-29 2.2E-33 223.4 18.1 147 222-392 10-156 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 3E-28 1E-32 212.4 17.2 138 226-392 1-139 (166)
3 1fxl_A Paraneoplastic encephal 100.0 8.8E-28 3E-32 209.6 17.9 138 225-392 2-140 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 8.6E-28 2.9E-32 210.5 16.9 139 224-392 2-141 (168)
5 2cjk_A Nuclear polyadenylated 100.0 2.1E-28 7.3E-33 214.5 10.3 138 224-392 2-139 (167)
6 4f02_A Polyadenylate-binding p 100.0 1.2E-27 3.9E-32 220.9 15.4 139 224-392 14-153 (213)
7 3nmr_A Cugbp ELAV-like family 99.9 7.9E-27 2.7E-31 205.4 15.8 140 225-392 3-146 (175)
8 2g4b_A Splicing factor U2AF 65 99.9 1.3E-26 4.6E-31 204.0 16.4 133 224-392 3-146 (172)
9 2qfj_A FBP-interacting repress 99.9 2.7E-27 9.2E-32 215.9 12.3 147 225-392 28-177 (216)
10 2yh0_A Splicing factor U2AF 65 99.9 3.4E-26 1.2E-30 205.9 17.1 142 224-392 3-166 (198)
11 3tyt_A Heterogeneous nuclear r 99.9 1.1E-25 3.8E-30 208.0 15.2 141 224-392 3-175 (205)
12 2ghp_A U4/U6 snRNA-associated 99.9 1.2E-25 4.1E-30 215.5 14.6 131 222-392 38-169 (292)
13 3sde_A Paraspeckle component 1 99.9 3.2E-25 1.1E-29 210.8 16.1 127 223-392 20-147 (261)
14 1fje_B Nucleolin RBD12, protei 99.9 9.2E-26 3.1E-30 199.8 11.2 138 221-392 9-146 (175)
15 3smz_A Protein raver-1, ribonu 99.9 1.6E-24 5.5E-29 206.8 16.8 125 225-392 22-147 (284)
16 3smz_A Protein raver-1, ribonu 99.9 2E-24 6.8E-29 206.2 17.3 141 224-392 94-236 (284)
17 2ghp_A U4/U6 snRNA-associated 99.9 8.6E-25 2.9E-29 209.5 14.3 145 224-392 116-264 (292)
18 3pgw_A U1-A; protein-RNA compl 99.9 9.6E-24 3.3E-28 201.2 18.2 142 222-392 6-254 (282)
19 2adc_A Polypyrimidine tract-bi 99.9 3E-23 1E-27 193.4 16.0 139 223-392 32-199 (229)
20 1qm9_A Polypyrimidine tract-bi 99.9 1.6E-23 5.5E-28 189.4 12.9 137 225-392 3-168 (198)
21 4f25_A Polyadenylate-binding p 99.8 3.3E-21 1.1E-25 161.7 11.1 108 225-352 5-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.8 4.7E-18 1.6E-22 139.3 11.1 79 225-320 19-98 (99)
23 2hvz_A Splicing factor, argini 99.7 1.6E-17 5.3E-22 135.2 10.0 98 226-345 1-100 (101)
24 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-17 3.8E-22 139.3 7.6 101 223-360 6-107 (115)
25 3s8s_A Histone-lysine N-methyl 99.7 5.9E-17 2E-21 135.4 11.6 82 223-321 4-86 (110)
26 3s7r_A Heterogeneous nuclear r 99.7 9.5E-17 3.2E-21 126.9 11.0 80 222-318 8-87 (87)
27 3md1_A Nuclear and cytoplasmic 99.7 1.4E-16 4.9E-21 124.5 11.3 79 226-321 2-81 (83)
28 1s79_A Lupus LA protein; RRM, 99.7 4.7E-17 1.6E-21 134.5 8.7 80 223-320 9-88 (103)
29 2fy1_A RNA-binding motif prote 99.7 1.6E-16 5.5E-21 133.5 12.0 83 224-324 6-89 (116)
30 2lxi_A RNA-binding protein 10; 99.7 3.3E-17 1.1E-21 132.0 7.4 81 225-322 1-84 (91)
31 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.6E-16 5.6E-21 125.2 10.7 80 224-320 5-85 (87)
32 2kn4_A Immunoglobulin G-bindin 99.7 9.5E-17 3.2E-21 140.7 10.1 107 282-392 11-122 (158)
33 2cq0_A Eukaryotic translation 99.7 2.5E-16 8.7E-21 128.5 11.9 84 222-322 12-96 (103)
34 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.9E-16 6.3E-21 124.4 10.3 79 223-318 5-84 (85)
35 2do4_A Squamous cell carcinoma 99.7 2.9E-16 1E-20 127.4 11.7 83 222-322 14-97 (100)
36 2lkz_A RNA-binding protein 5; 99.7 7.1E-17 2.4E-21 131.7 8.1 79 224-319 8-93 (95)
37 2dgo_A Cytotoxic granule-assoc 99.7 6.4E-16 2.2E-20 128.5 13.9 84 222-322 12-96 (115)
38 3ucg_A Polyadenylate-binding p 99.7 2.3E-16 8E-21 124.8 10.5 80 225-321 6-85 (89)
39 3p5t_L Cleavage and polyadenyl 99.7 5.5E-17 1.9E-21 129.7 6.8 79 226-321 2-83 (90)
40 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.7E-16 1.6E-20 126.8 12.5 82 222-322 12-94 (103)
41 2dgs_A DAZ-associated protein 99.7 3.4E-16 1.2E-20 126.8 11.6 84 222-322 7-90 (99)
42 2dng_A Eukaryotic translation 99.7 4.8E-16 1.6E-20 127.0 12.2 83 222-322 12-94 (103)
43 2cpf_A RNA binding motif prote 99.7 3.9E-16 1.3E-20 126.1 11.3 85 224-322 4-89 (98)
44 2dnh_A Bruno-like 5, RNA bindi 99.7 4.5E-16 1.5E-20 127.2 11.7 82 223-322 13-98 (105)
45 2ywk_A Putative RNA-binding pr 99.7 3.7E-16 1.3E-20 125.4 10.9 79 223-319 14-93 (95)
46 1whw_A Hypothetical protein ri 99.7 5.3E-16 1.8E-20 125.5 11.9 84 223-323 6-90 (99)
47 2cq3_A RNA-binding protein 9; 99.7 9.4E-16 3.2E-20 125.1 13.5 83 221-322 11-94 (103)
48 2cpz_A CUG triplet repeat RNA- 99.7 4.6E-16 1.6E-20 129.5 11.6 83 223-322 23-106 (115)
49 1wi8_A EIF-4B, eukaryotic tran 99.7 4.3E-16 1.5E-20 127.5 11.1 84 223-323 13-96 (104)
50 2dnm_A SRP46 splicing factor; 99.7 3.2E-16 1.1E-20 127.8 9.9 84 222-322 10-94 (103)
51 2cqc_A Arginine/serine-rich sp 99.7 6.8E-16 2.3E-20 123.6 11.6 81 222-319 12-93 (95)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.3E-16 2.2E-20 125.7 11.3 85 222-323 9-94 (102)
53 2x1f_A MRNA 3'-END-processing 99.7 5.4E-16 1.9E-20 125.1 10.7 81 225-322 2-83 (96)
54 2dnz_A Probable RNA-binding pr 99.7 7.5E-16 2.6E-20 123.5 11.5 82 224-322 4-86 (95)
55 2div_A TRNA selenocysteine ass 99.7 4.2E-16 1.4E-20 126.1 10.1 83 222-321 6-94 (99)
56 1p27_B RNA-binding protein 8A; 99.7 4.4E-16 1.5E-20 127.5 10.1 81 223-320 21-102 (106)
57 1x5u_A Splicing factor 3B subu 99.6 7.7E-16 2.6E-20 125.9 11.2 86 221-323 11-97 (105)
58 3ns6_A Eukaryotic translation 99.6 2.2E-16 7.5E-21 129.0 7.9 81 223-320 4-92 (100)
59 1x4h_A RNA-binding protein 28; 99.6 9.2E-16 3.2E-20 126.4 11.7 84 222-322 12-102 (111)
60 2cpy_A RNA-binding protein 12; 99.6 3.4E-16 1.2E-20 130.7 9.1 82 222-321 12-94 (114)
61 2dgv_A HnRNP M, heterogeneous 99.6 6.8E-16 2.3E-20 123.1 10.3 81 223-322 6-87 (92)
62 2dh8_A DAZ-associated protein 99.6 4.5E-16 1.5E-20 127.4 9.5 84 222-322 13-96 (105)
63 1p1t_A Cleavage stimulation fa 99.6 2.5E-16 8.7E-21 128.3 8.0 83 223-322 6-89 (104)
64 2dhg_A TRNA selenocysteine ass 99.6 7E-16 2.4E-20 125.9 10.6 83 222-322 6-91 (104)
65 2e5h_A Zinc finger CCHC-type a 99.6 9.2E-16 3.2E-20 122.8 11.1 80 222-318 13-93 (94)
66 2do0_A HnRNP M, heterogeneous 99.6 1.9E-15 6.3E-20 125.4 13.0 82 222-321 12-94 (114)
67 1oo0_B CG8781-PA, drosophila Y 99.6 6.8E-16 2.3E-20 127.4 10.2 82 223-321 24-106 (110)
68 1x5t_A Splicing factor 3B subu 99.6 8.1E-16 2.8E-20 123.6 10.3 82 224-322 4-87 (96)
69 2dgw_A Probable RNA-binding pr 99.6 1.4E-15 4.7E-20 121.3 11.6 80 223-321 8-87 (91)
70 2cqg_A TDP-43, TAR DNA-binding 99.6 2.2E-15 7.6E-20 122.8 13.0 83 222-322 12-94 (103)
71 2d9p_A Polyadenylate-binding p 99.6 1.2E-15 4.3E-20 124.3 11.5 82 222-322 12-94 (103)
72 1x5s_A Cold-inducible RNA-bind 99.6 6.7E-16 2.3E-20 125.6 9.8 84 222-322 9-93 (102)
73 1x4a_A Splicing factor, argini 99.6 1.2E-15 4.2E-20 125.8 11.4 81 222-322 19-100 (109)
74 4a8x_A RNA-binding protein wit 99.6 7E-16 2.4E-20 121.6 9.5 82 224-321 3-85 (88)
75 3ulh_A THO complex subunit 4; 99.6 1.1E-15 3.8E-20 125.3 11.1 79 223-319 27-106 (107)
76 2dgx_A KIAA0430 protein; RRM d 99.6 1.4E-15 4.7E-20 123.1 11.4 80 223-322 7-91 (96)
77 1wez_A HnRNP H', FTP-3, hetero 99.6 4.8E-16 1.7E-20 127.9 8.8 82 222-322 12-93 (102)
78 2db1_A Heterogeneous nuclear r 99.6 6.5E-16 2.2E-20 130.2 9.7 80 223-320 15-97 (118)
79 2mss_A Protein (musashi1); RNA 99.6 3.1E-16 1.1E-20 120.5 7.0 75 227-318 1-75 (75)
80 2cph_A RNA binding motif prote 99.6 1.3E-15 4.3E-20 124.8 11.0 84 222-322 12-98 (107)
81 1wg5_A Heterogeneous nuclear r 99.6 9.7E-16 3.3E-20 125.9 10.2 81 223-321 13-94 (104)
82 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.5E-20 126.4 10.9 84 222-322 22-105 (109)
83 2khc_A Testis-specific RNP-typ 99.6 8.2E-16 2.8E-20 128.4 9.5 80 222-318 37-117 (118)
84 2jwn_A Embryonic polyadenylate 99.6 1.2E-15 4.1E-20 128.5 10.5 80 225-321 36-115 (124)
85 1sjq_A Polypyrimidine tract-bi 99.6 8E-16 2.7E-20 128.1 9.1 78 222-322 13-93 (105)
86 2cpi_A CCR4-NOT transcription 99.6 8.4E-16 2.9E-20 127.7 9.2 85 224-322 14-102 (111)
87 2cqp_A RNA-binding protein 12; 99.6 9.4E-16 3.2E-20 123.8 9.2 82 223-321 13-95 (98)
88 2dgp_A Bruno-like 4, RNA bindi 99.6 1.2E-15 4.1E-20 124.9 9.9 85 222-323 10-98 (106)
89 2cqd_A RNA-binding region cont 99.6 2.4E-15 8.3E-20 125.4 11.8 83 221-321 13-96 (116)
90 2jrs_A RNA-binding protein 39; 99.6 1.4E-15 5E-20 126.1 10.4 83 222-321 23-106 (108)
91 3n9u_C Cleavage and polyadenyl 99.6 1.3E-15 4.6E-20 134.8 10.8 80 224-320 54-136 (156)
92 2ek1_A RNA-binding protein 12; 99.6 6.9E-16 2.4E-20 123.7 8.1 79 224-319 14-93 (95)
93 1u6f_A Tcubp1, RNA-binding pro 99.6 2.2E-15 7.4E-20 129.4 11.7 86 220-322 37-123 (139)
94 2cpe_A RNA-binding protein EWS 99.6 2E-15 6.8E-20 125.1 11.0 85 221-322 11-104 (113)
95 2la6_A RNA-binding protein FUS 99.6 1.5E-15 5.2E-20 123.1 10.1 81 222-319 10-99 (99)
96 1x4b_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 126.8 10.0 82 224-322 26-107 (116)
97 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.9E-20 126.4 9.2 75 224-321 14-92 (102)
98 2cq4_A RNA binding motif prote 99.6 8.5E-16 2.9E-20 127.7 8.4 82 223-321 23-104 (114)
99 2dnp_A RNA-binding protein 14; 99.6 3.2E-15 1.1E-19 119.1 11.2 76 222-322 6-82 (90)
100 2cpd_A Apobec-1 stimulating pr 99.6 6.2E-15 2.1E-19 119.5 13.0 76 222-322 12-90 (99)
101 3r27_A HnRNP L, heterogeneous 99.6 2.1E-15 7.2E-20 124.5 10.3 76 223-321 19-97 (100)
102 2dgt_A RNA-binding protein 30; 99.6 4.4E-15 1.5E-19 118.7 11.8 76 222-322 7-83 (92)
103 1iqt_A AUF1, heterogeneous nuc 99.6 3.2E-16 1.1E-20 120.3 4.8 75 227-318 1-75 (75)
104 2wbr_A GW182, gawky, LD47780P; 99.6 1.5E-15 5.1E-20 122.5 8.9 73 224-319 6-79 (89)
105 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4.1E-20 132.5 9.0 81 222-320 41-124 (136)
106 2e5j_A Methenyltetrahydrofolat 99.6 1.8E-15 6E-20 122.4 9.3 77 223-321 17-94 (97)
107 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.6E-16 1.9E-20 119.4 6.0 75 226-318 1-76 (77)
108 2xnq_A Nuclear polyadenylated 99.6 3.9E-15 1.3E-19 121.0 11.3 75 222-321 19-95 (97)
109 2dnn_A RNA-binding protein 12; 99.6 2.2E-15 7.5E-20 126.0 9.9 77 225-320 16-92 (109)
110 2dnq_A RNA-binding protein 4B; 99.6 3.3E-15 1.1E-19 119.0 10.5 77 222-323 5-82 (90)
111 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.4E-16 2.2E-20 126.0 6.4 82 223-321 17-98 (100)
112 2ytc_A PRE-mRNA-splicing facto 99.6 2.7E-15 9.3E-20 117.8 9.8 74 222-318 9-84 (85)
113 2cq1_A PTB-like protein L; RRM 99.6 4.3E-15 1.5E-19 122.5 11.3 77 223-322 13-92 (101)
114 1wex_A Hypothetical protein (r 99.6 3.4E-15 1.2E-19 123.7 10.7 78 222-322 12-92 (104)
115 1x4e_A RNA binding motif, sing 99.6 7.8E-16 2.7E-20 121.1 6.4 79 224-319 4-83 (85)
116 2ad9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 126.9 10.8 78 222-322 28-108 (119)
117 3ex7_B RNA-binding protein 8A; 99.6 1.9E-15 6.4E-20 127.7 9.0 83 222-321 19-102 (126)
118 2lmi_A GRSF-1, G-rich sequence 99.6 6.3E-16 2.1E-20 127.7 6.0 81 222-320 8-91 (107)
119 2fc9_A NCL protein; structure 99.6 4.7E-15 1.6E-19 120.5 11.0 80 222-322 12-92 (101)
120 2jvr_A Nucleolar protein 3; RN 99.6 1.7E-15 5.7E-20 127.2 8.6 79 222-321 25-105 (111)
121 2i2y_A Fusion protein consists 99.6 1.2E-15 4.1E-20 133.0 8.0 101 282-392 11-120 (150)
122 2la4_A Nuclear and cytoplasmic 99.6 2.1E-15 7.2E-20 122.5 8.9 74 224-320 26-100 (101)
123 1x5o_A RNA binding motif, sing 99.6 4.5E-15 1.5E-19 123.2 10.9 81 223-321 23-112 (114)
124 2kn4_A Immunoglobulin G-bindin 99.6 3.6E-15 1.2E-19 130.6 10.8 82 223-321 68-150 (158)
125 2nlw_A Eukaryotic translation 99.6 3E-15 1E-19 123.2 9.7 81 222-321 12-100 (105)
126 1x4g_A Nucleolysin TIAR; struc 99.6 5E-15 1.7E-19 122.2 11.1 77 223-322 23-100 (109)
127 2err_A Ataxin-2-binding protei 99.6 3.7E-15 1.3E-19 123.5 10.2 81 222-321 26-107 (109)
128 2kt5_A RNA and export factor-b 99.6 4.9E-15 1.7E-19 125.1 11.0 82 222-321 32-114 (124)
129 2kxn_B Transformer-2 protein h 99.6 2.6E-15 9E-20 128.6 9.5 84 221-321 42-126 (129)
130 1wel_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 129.4 6.8 81 223-320 23-103 (124)
131 2cpj_A Non-POU domain-containi 99.6 4.1E-15 1.4E-19 120.5 9.9 77 222-321 12-89 (99)
132 1h2v_Z 20 kDa nuclear CAP bind 99.6 7.8E-15 2.7E-19 128.6 12.3 82 223-321 37-119 (156)
133 1why_A Hypothetical protein ri 99.6 4.3E-15 1.5E-19 119.9 9.6 76 223-321 15-93 (97)
134 2dgu_A Heterogeneous nuclear r 99.6 8.7E-15 3E-19 119.6 11.3 76 223-323 9-85 (103)
135 2a3j_A U1 small nuclear ribonu 99.6 4.2E-15 1.4E-19 127.6 9.8 80 222-321 26-110 (127)
136 1fj7_A Nucleolin RBD1, protein 99.6 8.6E-16 2.9E-20 124.9 5.0 81 223-321 15-95 (101)
137 1rk8_A CG8781-PA, CG8781-PA pr 99.6 7.2E-15 2.4E-19 130.4 11.3 82 223-321 70-152 (165)
138 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7E-15 2.4E-19 125.7 10.9 81 221-318 59-140 (140)
139 2kvi_A Nuclear polyadenylated 99.6 2.1E-15 7.2E-20 121.9 7.0 75 223-322 8-84 (96)
140 2m2b_A RNA-binding protein 10; 99.6 1.9E-15 6.6E-20 129.2 7.0 84 222-323 20-110 (131)
141 1nu4_A U1A RNA binding domain; 99.6 3.4E-15 1.1E-19 120.1 8.0 79 223-321 6-89 (97)
142 2xs2_A Deleted in azoospermia- 99.6 2.2E-15 7.5E-20 122.7 7.0 80 223-321 7-86 (102)
143 2krb_A Eukaryotic translation 99.6 2.1E-15 7.1E-20 118.0 6.6 72 225-315 1-80 (81)
144 2dis_A Unnamed protein product 99.6 9.5E-15 3.2E-19 120.1 10.6 82 224-322 7-93 (109)
145 1x4f_A Matrin 3; structural ge 99.6 3.7E-15 1.3E-19 125.5 8.1 77 222-321 22-102 (112)
146 1whx_A Hypothetical protein ri 99.6 2.9E-15 1E-19 124.8 7.4 75 223-320 8-83 (111)
147 2ki2_A SS-DNA binding protein 99.6 1.1E-15 3.8E-20 121.5 4.5 78 226-321 2-80 (90)
148 1x4c_A Splicing factor, argini 99.6 1.1E-14 3.8E-19 120.2 10.7 76 223-322 13-94 (108)
149 2dha_A FLJ20171 protein; RRM d 99.6 3.1E-15 1.1E-19 127.8 7.3 78 225-320 23-104 (123)
150 1wf1_A RNA-binding protein RAL 99.6 1.1E-14 3.7E-19 120.4 10.1 74 224-322 26-101 (110)
151 2hzc_A Splicing factor U2AF 65 99.6 8.6E-15 3E-19 115.2 9.0 72 223-317 4-86 (87)
152 2jvo_A Nucleolar protein 3; nu 99.6 1.1E-14 3.8E-19 120.8 10.1 76 222-322 28-104 (108)
153 1fjc_A Nucleolin RBD2, protein 99.6 9.4E-15 3.2E-19 117.4 9.3 78 222-321 13-91 (96)
154 2cpx_A Hypothetical protein FL 99.6 1E-14 3.4E-19 121.1 9.5 83 223-322 23-106 (115)
155 2cqh_A IGF-II mRNA-binding pro 99.6 8E-15 2.7E-19 117.3 8.6 76 223-322 6-84 (93)
156 2i2y_A Fusion protein consists 99.6 7.4E-15 2.5E-19 128.0 9.0 79 221-321 69-148 (150)
157 2e44_A Insulin-like growth fac 99.6 1.3E-14 4.4E-19 116.7 9.7 77 224-321 14-92 (96)
158 2fc8_A NCL protein; structure 99.5 3.2E-14 1.1E-18 115.5 11.3 82 222-323 12-94 (102)
159 2hgm_A HNRPF protein, heteroge 99.5 6E-15 2E-19 126.6 7.3 79 223-320 40-120 (126)
160 2lea_A Serine/arginine-rich sp 99.5 8.8E-15 3E-19 126.2 8.3 83 223-322 45-128 (135)
161 2e5g_A U6 snRNA-specific termi 99.5 3.5E-14 1.2E-18 114.1 11.0 77 224-322 7-83 (94)
162 3q2s_C Cleavage and polyadenyl 99.5 9.5E-15 3.3E-19 137.0 8.8 80 224-320 67-149 (229)
163 1wg1_A KIAA1579 protein, homol 99.5 1.9E-14 6.6E-19 114.3 9.1 73 223-319 3-76 (88)
164 2hgn_A Heterogeneous nuclear r 99.5 2.3E-15 7.9E-20 131.2 4.0 80 223-321 44-123 (139)
165 3egn_A RNA-binding protein 40; 99.5 2.1E-14 7.2E-19 124.1 9.9 80 222-321 42-130 (143)
166 3d2w_A TAR DNA-binding protein 99.5 2.1E-14 7.1E-19 115.1 8.6 75 222-321 8-84 (89)
167 1x5p_A Negative elongation fac 99.5 1.2E-13 4.1E-18 111.6 12.1 75 223-322 13-88 (97)
168 2lcw_A RNA-binding protein FUS 99.3 1.2E-15 4E-20 127.4 0.0 85 222-323 4-97 (116)
169 1wf0_A TDP-43, TAR DNA-binding 99.5 3.1E-14 1.1E-18 112.9 7.6 76 224-322 4-79 (88)
170 3md3_A Nuclear and cytoplasmic 99.5 1.6E-13 5.3E-18 118.8 12.2 80 223-319 85-165 (166)
171 2voo_A Lupus LA protein; RNA-b 99.5 7.7E-14 2.6E-18 127.5 10.8 78 225-320 109-186 (193)
172 2f3j_A RNA and export factor b 99.5 4.9E-14 1.7E-18 127.2 8.9 82 222-321 85-167 (177)
173 4f02_A Polyadenylate-binding p 99.5 9.6E-14 3.3E-18 127.5 10.9 78 225-321 103-181 (213)
174 2qfj_A FBP-interacting repress 99.5 1.6E-13 5.4E-18 124.5 11.4 81 225-322 125-206 (216)
175 2cjk_A Nuclear polyadenylated 99.5 5.4E-14 1.8E-18 122.5 7.9 80 225-321 87-166 (167)
176 3pgw_S U1-70K; protein-RNA com 99.5 9.1E-14 3.1E-18 142.1 10.8 81 224-321 101-182 (437)
177 1l3k_A Heterogeneous nuclear r 99.5 1.9E-13 6.5E-18 122.1 11.1 81 225-322 104-184 (196)
178 2cq2_A Hypothetical protein LO 99.5 6.8E-14 2.3E-18 118.1 7.1 74 223-319 23-104 (114)
179 2g4b_A Splicing factor U2AF 65 99.5 1.6E-13 5.4E-18 120.1 9.5 78 225-319 94-172 (172)
180 2dnl_A Cytoplasmic polyadenyla 99.5 1.3E-13 4.6E-18 114.9 8.5 80 223-319 6-86 (114)
181 3beg_B Splicing factor, argini 99.5 7.7E-14 2.6E-18 116.7 6.9 74 224-321 15-94 (115)
182 1sjr_A Polypyrimidine tract-bi 99.5 1.8E-13 6.2E-18 122.4 9.7 77 225-322 46-125 (164)
183 3zzy_A Polypyrimidine tract-bi 99.4 4.3E-13 1.5E-17 115.7 11.3 76 225-322 28-107 (130)
184 3nmr_A Cugbp ELAV-like family 99.4 2.9E-13 9.9E-18 118.3 10.5 77 224-318 94-174 (175)
185 2yh0_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 120.6 11.0 83 223-322 112-195 (198)
186 2e5i_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 114.9 10.2 74 226-322 26-103 (124)
187 1b7f_A Protein (SXL-lethal pro 99.4 4.7E-13 1.6E-17 116.5 10.7 79 223-318 87-168 (168)
188 2bz2_A Negative elongation fac 99.4 4.2E-13 1.4E-17 113.7 8.7 74 223-321 37-111 (121)
189 1fxl_A Paraneoplastic encephal 99.4 6.6E-13 2.3E-17 115.0 10.1 78 224-318 87-167 (167)
190 2j8a_A Histone-lysine N-methyl 99.4 4.6E-13 1.6E-17 115.2 8.1 77 226-319 3-94 (136)
191 2diu_A KIAA0430 protein; struc 99.4 3.9E-13 1.3E-17 109.6 7.3 71 224-321 7-84 (96)
192 2pe8_A Splicing factor 45; RRM 99.4 2.5E-12 8.4E-17 106.6 11.7 82 223-320 6-93 (105)
193 3u1l_A PRE-mRNA-splicing facto 99.4 8.9E-13 3E-17 124.8 8.5 76 222-320 131-228 (240)
194 1fje_B Nucleolin RBD12, protei 99.4 2.3E-12 7.8E-17 113.4 10.6 76 223-320 97-173 (175)
195 4fxv_A ELAV-like protein 1; RN 99.4 8.9E-13 3E-17 107.7 6.6 56 333-392 16-71 (99)
196 2dit_A HIV TAT specific factor 99.3 6.7E-12 2.3E-16 104.3 11.6 81 221-322 11-103 (112)
197 2lxi_A RNA-binding protein 10; 99.3 2.8E-13 9.6E-18 108.8 2.5 53 336-392 1-54 (91)
198 2lkz_A RNA-binding protein 5; 99.3 6.1E-13 2.1E-17 108.3 3.9 54 335-392 8-63 (95)
199 3pgw_A U1-A; protein-RNA compl 99.3 4.7E-12 1.6E-16 120.2 10.4 76 222-319 204-281 (282)
200 2lea_A Serine/arginine-rich sp 99.3 1.1E-12 3.7E-17 113.0 4.4 94 285-392 5-99 (135)
201 3s7r_A Heterogeneous nuclear r 99.3 3.8E-12 1.3E-16 100.2 7.2 56 333-392 8-63 (87)
202 1qm9_A Polypyrimidine tract-bi 99.3 3E-12 1E-16 115.1 7.2 76 223-320 118-196 (198)
203 1s79_A Lupus LA protein; RRM, 99.3 3.9E-12 1.3E-16 104.8 7.3 54 334-392 9-62 (103)
204 3s8s_A Histone-lysine N-methyl 99.3 3.3E-12 1.1E-16 106.4 6.7 55 334-392 4-58 (110)
205 2adc_A Polypyrimidine tract-bi 99.3 7.6E-12 2.6E-16 116.0 9.1 75 224-320 150-227 (229)
206 1rk8_A CG8781-PA, CG8781-PA pr 99.3 4.1E-12 1.4E-16 112.6 6.8 100 289-392 11-124 (165)
207 2dgs_A DAZ-associated protein 99.3 8.7E-12 3E-16 100.6 7.9 56 333-392 7-62 (99)
208 3sde_A Paraspeckle component 1 99.3 1.8E-11 6.3E-16 115.7 10.9 79 225-321 96-179 (261)
209 3pgw_S U1-70K; protein-RNA com 99.3 1.3E-12 4.3E-17 133.7 2.9 55 334-392 100-154 (437)
210 3v4m_A Splicing factor U2AF 65 99.3 2E-11 6.8E-16 101.0 9.4 82 223-319 3-95 (105)
211 1jmt_A Splicing factor U2AF 35 99.2 4E-12 1.4E-16 105.0 5.1 71 230-318 20-103 (104)
212 1x4e_A RNA binding motif, sing 99.2 7.7E-12 2.6E-16 98.0 6.2 54 335-392 4-57 (85)
213 3tyt_A Heterogeneous nuclear r 99.2 1.2E-11 4E-16 113.9 8.2 76 224-318 122-204 (205)
214 2dh8_A DAZ-associated protein 99.2 1.3E-11 4.3E-16 100.7 7.2 56 333-392 13-68 (105)
215 1x4h_A RNA-binding protein 28; 99.2 1E-11 3.5E-16 102.0 6.7 56 333-392 12-67 (111)
216 3bs9_A Nucleolysin TIA-1 isofo 99.2 1E-11 3.5E-16 97.4 6.3 55 334-392 4-58 (87)
217 3md1_A Nuclear and cytoplasmic 99.2 1.1E-11 3.9E-16 96.3 6.5 52 337-392 2-53 (83)
218 3ue2_A Poly(U)-binding-splicin 99.2 4.6E-11 1.6E-15 101.1 10.7 83 224-319 19-107 (118)
219 3mdf_A Peptidyl-prolyl CIS-tra 99.2 8.5E-12 2.9E-16 97.5 5.7 55 334-392 5-59 (85)
220 3p5t_L Cleavage and polyadenyl 99.2 4.6E-12 1.6E-16 100.9 4.1 52 337-392 2-55 (90)
221 2cqg_A TDP-43, TAR DNA-binding 99.2 1.3E-11 4.3E-16 100.4 6.8 56 333-392 12-67 (103)
222 2dnm_A SRP46 splicing factor; 99.2 1.6E-11 5.3E-16 99.8 7.3 56 333-392 10-65 (103)
223 2rs2_A Musashi-1, RNA-binding 99.2 9.9E-12 3.4E-16 102.9 6.2 56 333-392 22-77 (109)
224 2x1f_A MRNA 3'-END-processing 99.2 1.1E-11 3.8E-16 99.6 6.3 54 335-392 1-54 (96)
225 2div_A TRNA selenocysteine ass 99.2 1.4E-11 4.6E-16 99.3 6.7 56 333-392 6-62 (99)
226 1whw_A Hypothetical protein ri 99.2 1.5E-11 5E-16 99.1 6.9 56 333-392 5-60 (99)
227 3ucg_A Polyadenylate-binding p 99.2 1.8E-11 6E-16 96.5 7.1 53 336-392 6-58 (89)
228 2dnz_A Probable RNA-binding pr 99.2 1.8E-11 6.2E-16 97.7 7.2 54 335-392 4-57 (95)
229 1uaw_A Mouse-musashi-1; RNP-ty 99.2 6.8E-12 2.3E-16 96.2 4.4 52 337-392 1-52 (77)
230 2cqc_A Arginine/serine-rich sp 99.2 2.1E-11 7.1E-16 97.2 7.2 56 333-392 12-67 (95)
231 2m2b_A RNA-binding protein 10; 99.2 6.9E-12 2.3E-16 106.9 4.6 55 333-391 20-76 (131)
232 1iqt_A AUF1, heterogeneous nuc 99.2 6.4E-12 2.2E-16 96.0 3.9 51 338-392 1-51 (75)
233 3ns6_A Eukaryotic translation 99.2 4.8E-12 1.6E-16 103.1 3.0 54 335-392 5-64 (100)
234 2mss_A Protein (musashi1); RNA 99.2 9.2E-12 3.2E-16 95.3 4.4 51 338-392 1-51 (75)
235 2e5h_A Zinc finger CCHC-type a 99.2 2.5E-11 8.5E-16 96.7 7.1 56 333-392 13-68 (94)
236 2dhg_A TRNA selenocysteine ass 99.2 2.4E-11 8.1E-16 98.8 7.1 55 333-392 6-61 (104)
237 2dgp_A Bruno-like 4, RNA bindi 99.2 1.2E-11 4.2E-16 100.8 5.3 56 333-392 10-65 (106)
238 1x5u_A Splicing factor 3B subu 99.2 2.6E-11 9E-16 98.7 7.1 56 333-392 12-67 (105)
239 2cq4_A RNA binding motif prote 99.2 2.4E-11 8.2E-16 100.6 7.0 55 334-392 23-77 (114)
240 1x5s_A Cold-inducible RNA-bind 99.2 2E-11 6.7E-16 98.9 6.3 56 333-392 9-64 (102)
241 2dng_A Eukaryotic translation 99.2 2.9E-11 1E-15 98.3 7.3 55 333-392 12-66 (103)
242 2cqd_A RNA-binding region cont 99.2 2.8E-11 9.7E-16 100.5 7.3 56 333-392 14-69 (116)
243 1p27_B RNA-binding protein 8A; 99.2 2.3E-11 7.7E-16 99.3 6.5 56 333-392 20-75 (106)
244 2la6_A RNA-binding protein FUS 99.2 2.2E-11 7.7E-16 98.3 6.5 56 333-392 10-73 (99)
245 2hgn_A Heterogeneous nuclear r 99.2 7.9E-12 2.7E-16 108.8 4.0 95 285-392 2-96 (139)
246 2khc_A Testis-specific RNP-typ 99.2 5.1E-11 1.7E-15 99.1 8.7 56 333-392 37-92 (118)
247 1wg5_A Heterogeneous nuclear r 99.2 2.6E-11 8.9E-16 99.3 6.8 55 333-392 12-67 (104)
248 2dgo_A Cytotoxic granule-assoc 99.2 3.4E-11 1.2E-15 99.7 7.4 56 333-392 12-67 (115)
249 1x5t_A Splicing factor 3B subu 99.2 1.5E-11 5E-16 98.4 4.9 54 335-392 4-58 (96)
250 2xs2_A Deleted in azoospermia- 99.2 2.3E-11 8E-16 98.6 6.1 54 334-392 7-60 (102)
251 2cq0_A Eukaryotic translation 99.2 2.4E-11 8.2E-16 98.7 6.1 56 333-392 12-67 (103)
252 2cph_A RNA binding motif prote 99.2 4.1E-11 1.4E-15 97.7 7.5 56 333-392 12-68 (107)
253 2cqb_A Peptidyl-prolyl CIS-tra 99.2 1.7E-11 5.9E-16 99.3 5.1 56 333-392 9-64 (102)
254 2dnh_A Bruno-like 5, RNA bindi 99.2 4.6E-11 1.6E-15 97.2 7.7 54 334-392 13-66 (105)
255 2do4_A Squamous cell carcinoma 99.2 5.2E-11 1.8E-15 96.2 7.7 55 333-392 14-68 (100)
256 3n9u_C Cleavage and polyadenyl 99.2 2.4E-11 8.2E-16 107.4 6.2 54 335-392 54-109 (156)
257 2jrs_A RNA-binding protein 39; 99.2 3E-11 1E-15 99.9 6.4 56 333-392 23-78 (108)
258 2ywk_A Putative RNA-binding pr 99.2 4E-11 1.4E-15 95.7 6.9 55 333-392 13-67 (95)
259 1wi8_A EIF-4B, eukaryotic tran 99.2 2.9E-11 9.9E-16 98.5 6.1 55 333-392 12-67 (104)
260 1oo0_B CG8781-PA, drosophila Y 99.2 3.2E-11 1.1E-15 99.1 6.4 56 333-392 23-78 (110)
261 2cpz_A CUG triplet repeat RNA- 99.2 2.7E-11 9.1E-16 100.5 5.9 56 333-392 22-77 (115)
262 3d2w_A TAR DNA-binding protein 99.2 2.6E-11 8.9E-16 96.9 5.6 51 333-392 8-58 (89)
263 1x4b_A Heterogeneous nuclear r 99.2 2.9E-11 9.9E-16 100.5 6.0 55 334-392 25-79 (116)
264 1p1t_A Cleavage stimulation fa 99.2 1.3E-11 4.5E-16 100.2 3.7 55 334-392 6-60 (104)
265 2cpy_A RNA-binding protein 12; 99.2 2.1E-11 7.1E-16 101.5 4.7 55 333-392 12-67 (114)
266 4f25_A Polyadenylate-binding p 99.1 2.8E-11 9.5E-16 101.0 5.4 51 336-392 5-55 (115)
267 2cpf_A RNA binding motif prote 99.1 2.4E-11 8.4E-16 97.6 4.9 54 335-392 4-60 (98)
268 2kxn_B Transformer-2 protein h 99.1 7.1E-11 2.4E-15 100.9 7.8 56 333-392 43-98 (129)
269 2hgl_A HNRPF protein, heteroge 99.1 2.5E-11 8.7E-16 105.1 5.1 55 333-392 41-98 (136)
270 1wez_A HnRNP H', FTP-3, hetero 99.1 3.8E-11 1.3E-15 98.5 5.7 53 334-392 13-65 (102)
271 2ki2_A SS-DNA binding protein 99.1 1.4E-11 4.8E-16 97.6 2.8 52 337-392 2-53 (90)
272 3ulh_A THO complex subunit 4; 99.1 6.3E-11 2.1E-15 96.7 6.7 55 333-392 26-80 (107)
273 2dis_A Unnamed protein product 99.1 5.3E-11 1.8E-15 97.5 6.0 54 335-392 7-62 (109)
274 2j76_E EIF-4B, EIF4B, eukaryot 99.1 2.8E-11 9.7E-16 98.2 4.2 55 333-392 16-71 (100)
275 2kt5_A RNA and export factor-b 99.1 8E-11 2.7E-15 99.0 7.1 56 332-392 31-86 (124)
276 1x5o_A RNA binding motif, sing 99.1 1.1E-10 3.8E-15 96.5 7.6 55 333-392 22-76 (114)
277 2d9p_A Polyadenylate-binding p 99.1 9E-11 3.1E-15 95.3 6.8 54 333-392 12-65 (103)
278 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.1 1.4E-10 4.8E-15 98.7 8.3 56 333-392 60-115 (140)
279 2jwn_A Embryonic polyadenylate 99.1 5E-11 1.7E-15 100.0 5.4 54 335-392 35-88 (124)
280 2fy1_A RNA-binding motif prote 99.1 7.4E-11 2.5E-15 98.7 6.2 54 334-392 5-58 (116)
281 2dgv_A HnRNP M, heterogeneous 99.1 1.2E-10 4.1E-15 92.3 7.1 54 333-392 5-58 (92)
282 1sjq_A Polypyrimidine tract-bi 99.1 7.5E-11 2.6E-15 98.0 6.1 49 334-392 14-62 (105)
283 3ex7_B RNA-binding protein 8A; 99.1 7.4E-11 2.5E-15 99.2 6.2 56 333-392 19-74 (126)
284 3tht_A Alkylated DNA repair pr 99.1 1.3E-10 4.4E-15 115.4 8.7 75 221-318 14-96 (345)
285 1u6f_A Tcubp1, RNA-binding pro 99.1 6.1E-11 2.1E-15 101.4 5.5 56 333-392 39-94 (139)
286 2db1_A Heterogeneous nuclear r 99.1 4.9E-11 1.7E-15 100.1 4.7 54 334-392 15-71 (118)
287 2krb_A Eukaryotic translation 99.1 6.1E-11 2.1E-15 92.4 4.9 50 337-392 2-57 (81)
288 2dnl_A Cytoplasmic polyadenyla 99.1 5.1E-11 1.7E-15 99.1 4.7 54 334-392 6-62 (114)
289 4a8x_A RNA-binding protein wit 99.1 4.8E-11 1.6E-15 93.6 4.4 53 336-392 4-57 (88)
290 2cpe_A RNA-binding protein EWS 99.1 7.8E-11 2.7E-15 97.2 5.6 56 333-392 12-75 (113)
291 2ek1_A RNA-binding protein 12; 99.1 3.2E-11 1.1E-15 96.2 3.0 55 334-392 13-67 (95)
292 2do0_A HnRNP M, heterogeneous 99.1 1.3E-10 4.6E-15 95.8 6.7 55 333-392 12-66 (114)
293 2lmi_A GRSF-1, G-rich sequence 99.1 4.5E-11 1.5E-15 98.3 3.8 55 333-392 8-65 (107)
294 2hgm_A HNRPF protein, heteroge 99.1 1.3E-10 4.5E-15 99.5 6.8 53 334-392 40-94 (126)
295 1wel_A RNA-binding protein 12; 99.1 6.7E-11 2.3E-15 99.7 4.7 56 333-392 22-77 (124)
296 1h2v_Z 20 kDa nuclear CAP bind 99.1 1.6E-10 5.6E-15 100.9 7.1 56 333-392 36-91 (156)
297 2j8a_A Histone-lysine N-methyl 99.1 9.2E-11 3.1E-15 100.9 5.3 51 337-391 3-57 (136)
298 2dnn_A RNA-binding protein 12; 99.1 1.1E-10 3.7E-15 97.4 5.5 54 333-392 13-66 (109)
299 2ad9_A Polypyrimidine tract-bi 99.1 1.5E-10 5E-15 98.3 6.4 51 332-392 27-77 (119)
300 2cqp_A RNA-binding protein 12; 99.1 6.6E-11 2.2E-15 95.1 4.1 56 333-392 12-67 (98)
301 3q2s_C Cleavage and polyadenyl 99.1 1.3E-10 4.4E-15 108.8 6.6 54 335-392 67-122 (229)
302 3r27_A HnRNP L, heterogeneous 99.1 1.8E-10 6.3E-15 94.8 6.5 51 332-392 17-67 (100)
303 2cq3_A RNA-binding protein 9; 99.1 3.4E-10 1.2E-14 91.8 8.0 54 333-392 12-65 (103)
304 2dha_A FLJ20171 protein; RRM d 99.1 7.7E-11 2.6E-15 100.4 4.2 57 335-392 22-78 (123)
305 2cq1_A PTB-like protein L; RRM 99.1 2.1E-10 7.2E-15 94.3 6.6 50 333-392 12-61 (101)
306 2cqi_A Nucleolysin TIAR; RNA r 99.1 2.3E-10 7.9E-15 92.8 6.8 54 333-392 12-65 (103)
307 2dgw_A Probable RNA-binding pr 99.1 2.2E-10 7.4E-15 90.9 6.4 54 333-392 7-60 (91)
308 1wf0_A TDP-43, TAR DNA-binding 99.0 9.1E-11 3.1E-15 92.7 3.7 49 335-392 4-52 (88)
309 2nlw_A Eukaryotic translation 99.0 2.8E-10 9.6E-15 93.2 6.7 52 335-392 14-71 (105)
310 1wex_A Hypothetical protein (r 99.0 4.6E-10 1.6E-14 92.7 7.5 50 333-392 12-61 (104)
311 2dgx_A KIAA0430 protein; RRM d 99.0 3.6E-10 1.2E-14 91.0 6.1 53 333-392 6-62 (96)
312 1x4d_A Matrin 3; structural ge 99.0 1.8E-10 6.2E-15 95.0 4.0 50 333-392 12-62 (102)
313 3s6e_A RNA-binding protein 39; 99.0 1E-09 3.5E-14 92.2 8.6 76 223-319 5-91 (114)
314 2err_A Ataxin-2-binding protei 99.0 4.4E-10 1.5E-14 92.8 6.1 54 333-392 26-79 (109)
315 2voo_A Lupus LA protein; RNA-b 99.0 3.2E-10 1.1E-14 103.4 5.8 95 293-392 63-160 (193)
316 3lqv_A PRE-mRNA branch site pr 99.0 5.6E-10 1.9E-14 92.3 6.5 52 334-392 6-57 (115)
317 1x4a_A Splicing factor, argini 99.0 7.7E-10 2.6E-14 90.7 6.7 53 333-392 19-71 (109)
318 2lcw_A RNA-binding protein FUS 98.5 6.3E-11 2.1E-15 98.5 0.0 55 334-392 5-67 (116)
319 2d9o_A DNAJ (HSP40) homolog, s 99.0 4.5E-09 1.5E-13 86.3 10.9 74 225-321 10-90 (100)
320 2ytc_A PRE-mRNA-splicing facto 98.9 1.7E-09 5.7E-14 84.4 7.1 50 333-392 9-58 (85)
321 1fj7_A Nucleolin RBD1, protein 98.9 9E-11 3.1E-15 94.9 -0.3 54 334-392 15-68 (101)
322 2cpi_A CCR4-NOT transcription 98.9 5.4E-10 1.8E-14 92.4 4.1 55 334-392 13-73 (111)
323 2fc9_A NCL protein; structure 98.9 8.4E-10 2.9E-14 89.2 5.1 52 333-392 12-63 (101)
324 1x4c_A Splicing factor, argini 98.9 1.7E-09 5.8E-14 88.8 6.6 49 333-392 12-60 (108)
325 2dnq_A RNA-binding protein 4B; 98.9 1.9E-09 6.6E-14 85.3 6.7 48 333-392 5-52 (90)
326 2fc8_A NCL protein; structure 98.9 1.3E-09 4.6E-14 88.0 5.9 53 333-392 12-64 (102)
327 1x4f_A Matrin 3; structural ge 98.9 5.7E-10 2E-14 93.7 3.7 50 333-392 22-72 (112)
328 2cpx_A Hypothetical protein FL 98.9 3.1E-10 1.1E-14 93.8 2.1 56 333-392 22-77 (115)
329 1wf1_A RNA-binding protein RAL 98.9 1.4E-09 4.7E-14 89.5 5.8 66 309-392 6-72 (110)
330 2f3j_A RNA and export factor b 98.9 1.2E-09 4.2E-14 98.3 5.9 55 333-392 85-139 (177)
331 2a3j_A U1 small nuclear ribonu 98.9 1.5E-09 5.1E-14 92.9 6.0 53 333-392 26-82 (127)
332 1nu4_A U1A RNA binding domain; 98.9 4.9E-10 1.7E-14 89.6 2.6 53 333-392 5-61 (97)
333 1why_A Hypothetical protein ri 98.9 1.7E-09 5.7E-14 86.8 5.6 50 333-392 14-63 (97)
334 2hvz_A Splicing factor, argini 98.9 1.2E-09 4.2E-14 88.2 4.6 47 337-392 1-47 (101)
335 2cpj_A Non-POU domain-containi 98.9 2E-09 6.9E-14 86.7 5.9 50 333-392 12-61 (99)
336 2wbr_A GW182, gawky, LD47780P; 98.9 1.5E-09 5E-14 87.5 4.8 48 335-392 6-53 (89)
337 2la4_A Nuclear and cytoplasmic 98.9 2.7E-09 9.2E-14 86.1 6.1 48 335-392 26-73 (101)
338 1x4g_A Nucleolysin TIAR; struc 98.9 2.4E-09 8E-14 87.9 5.7 49 334-392 23-71 (109)
339 2kvi_A Nuclear polyadenylated 98.8 3.9E-09 1.3E-13 84.8 5.5 48 333-392 7-55 (96)
340 2xnq_A Nuclear polyadenylated 98.8 5.6E-09 1.9E-13 84.3 6.3 48 333-392 19-67 (97)
341 2jvo_A Nucleolar protein 3; nu 98.8 4.6E-09 1.6E-13 86.7 5.9 48 333-392 28-75 (108)
342 2dgu_A Heterogeneous nuclear r 98.8 5E-09 1.7E-13 85.1 5.9 48 333-392 8-55 (103)
343 2e5j_A Methenyltetrahydrofolat 98.8 4E-09 1.4E-13 84.8 5.1 51 333-392 16-66 (97)
344 2e5g_A U6 snRNA-specific termi 98.8 9E-09 3.1E-13 82.2 7.1 49 335-392 7-55 (94)
345 2jvr_A Nucleolar protein 3; RN 98.8 2.5E-09 8.6E-14 89.4 3.9 50 335-392 27-77 (111)
346 1whx_A Hypothetical protein ri 98.8 3.6E-09 1.2E-13 87.7 4.8 48 335-392 9-56 (111)
347 1fjc_A Nucleolin RBD2, protein 98.8 1.6E-09 5.5E-14 86.6 2.4 51 333-392 13-63 (96)
348 3egn_A RNA-binding protein 40; 98.8 7.1E-10 2.4E-14 95.4 -0.1 53 333-392 42-102 (143)
349 2cpd_A Apobec-1 stimulating pr 98.8 1.6E-08 5.4E-13 81.4 7.7 50 333-392 12-61 (99)
350 3beg_B Splicing factor, argini 98.8 3.8E-09 1.3E-13 88.0 4.0 47 335-392 15-61 (115)
351 2cq2_A Hypothetical protein LO 98.8 4.3E-09 1.5E-13 88.6 4.2 50 333-392 22-73 (114)
352 2dgt_A RNA-binding protein 30; 98.8 1E-08 3.5E-13 81.4 6.2 48 333-392 7-54 (92)
353 2hzc_A Splicing factor U2AF 65 98.7 7.6E-09 2.6E-13 80.8 4.8 52 335-392 5-63 (87)
354 2dnr_A Synaptojanin-1; RRM dom 98.7 3.2E-08 1.1E-12 79.8 8.1 73 223-320 5-85 (91)
355 2dnp_A RNA-binding protein 14; 98.7 1.4E-08 4.8E-13 80.3 5.7 48 333-392 6-53 (90)
356 2cqh_A IGF-II mRNA-binding pro 98.7 5.5E-09 1.9E-13 83.0 2.9 48 334-392 6-54 (93)
357 1owx_A Lupus LA protein, SS-B, 98.6 6.2E-08 2.1E-12 82.3 8.1 73 224-319 17-94 (121)
358 2e44_A Insulin-like growth fac 98.6 1.6E-08 5.5E-13 80.6 4.0 51 334-392 13-64 (96)
359 1wg1_A KIAA1579 protein, homol 98.6 1.5E-08 5.1E-13 80.0 3.5 47 335-392 4-50 (88)
360 1sjr_A Polypyrimidine tract-bi 98.6 4.2E-08 1.4E-12 87.6 6.6 50 335-392 45-94 (164)
361 1x5p_A Negative elongation fac 98.6 8.5E-08 2.9E-12 76.8 6.7 48 333-392 12-59 (97)
362 3zzy_A Polypyrimidine tract-bi 98.6 6.2E-08 2.1E-12 83.3 6.0 49 335-392 27-76 (130)
363 1ufw_A Synaptojanin 2; RNP dom 98.5 1.4E-07 5E-12 76.5 6.7 73 222-319 12-93 (95)
364 3dxb_A Thioredoxin N-terminall 98.5 2.1E-07 7.2E-12 85.5 8.5 70 237-319 141-211 (222)
365 2pe8_A Splicing factor 45; RRM 98.5 1.6E-07 5.6E-12 77.3 6.7 55 334-392 6-66 (105)
366 2e5i_A Heterogeneous nuclear r 98.5 1.8E-07 6.3E-12 79.6 7.0 46 337-392 26-72 (124)
367 2bz2_A Negative elongation fac 98.5 1.1E-07 3.6E-12 80.2 4.9 48 333-392 36-83 (121)
368 3u1l_A PRE-mRNA-splicing facto 98.4 1.1E-07 3.6E-12 89.9 4.6 50 333-392 131-189 (240)
369 2diu_A KIAA0430 protein; struc 98.4 2.9E-07 9.8E-12 74.9 5.5 46 334-392 6-56 (96)
370 3tht_A Alkylated DNA repair pr 98.3 3.1E-07 1.1E-11 91.1 4.8 50 333-392 15-66 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 98.1 5.2E-06 1.8E-10 67.9 7.7 38 346-392 27-64 (100)
372 3v4m_A Splicing factor U2AF 65 98.1 1.9E-06 6.4E-11 70.9 4.2 54 335-392 4-69 (105)
373 2l9w_A U4/U6 snRNA-associated- 98.1 1E-05 3.4E-10 67.3 8.5 71 225-318 21-97 (117)
374 3ue2_A Poly(U)-binding-splicin 98.1 2.1E-06 7.2E-11 72.3 3.9 54 335-392 19-81 (118)
375 2dit_A HIV TAT specific factor 98.1 3.3E-06 1.1E-10 69.5 5.0 52 333-392 12-74 (112)
376 1jmt_A Splicing factor U2AF 35 98.0 8.9E-07 3E-11 72.7 0.5 47 341-392 20-78 (104)
377 2dhx_A Poly (ADP-ribose) polym 97.9 0.00011 3.6E-09 60.5 10.2 88 224-349 7-99 (104)
378 1owx_A Lupus LA protein, SS-B, 97.8 1.5E-05 5E-10 67.6 5.0 49 333-391 15-64 (121)
379 3s6e_A RNA-binding protein 39; 97.2 0.00033 1.1E-08 58.4 4.8 50 335-392 6-65 (114)
380 1whv_A Poly(A)-specific ribonu 96.7 0.0044 1.5E-07 50.4 7.5 52 225-302 16-67 (100)
381 1wey_A Calcipressin 1; structu 96.5 0.011 3.7E-07 48.6 8.5 74 225-321 5-84 (104)
382 1uw4_A UPF3X; nonsense mediate 96.4 0.015 5E-07 46.7 8.6 69 226-309 2-71 (91)
383 1wwh_A Nucleoporin 35, nucleop 96.4 0.018 6.2E-07 48.4 9.2 72 224-319 23-95 (119)
384 3ctr_A Poly(A)-specific ribonu 95.9 0.0062 2.1E-07 49.6 4.0 51 226-302 7-57 (101)
385 3dxb_A Thioredoxin N-terminall 95.5 0.0092 3.1E-07 54.2 4.1 41 348-392 141-185 (222)
386 2dnr_A Synaptojanin-1; RRM dom 95.1 0.025 8.6E-07 45.3 4.8 45 335-391 6-58 (91)
387 3pq1_A Poly(A) RNA polymerase; 94.6 0.015 5.3E-07 59.5 3.1 56 225-303 53-108 (464)
388 3p3d_A Nucleoporin 53; structu 94.5 0.086 2.9E-06 45.0 6.8 89 226-319 8-97 (132)
389 2l08_A Regulator of nonsense t 93.4 0.097 3.3E-06 42.4 5.0 70 225-309 9-79 (97)
390 1ufw_A Synaptojanin 2; RNP dom 93.3 0.057 1.9E-06 43.6 3.3 47 333-391 12-67 (95)
391 1uw4_A UPF3X; nonsense mediate 93.2 0.18 6E-06 40.3 6.2 52 337-392 2-55 (91)
392 2dhx_A Poly (ADP-ribose) polym 90.8 0.63 2.2E-05 38.0 6.9 49 335-391 7-56 (104)
393 1whv_A Poly(A)-specific ribonu 90.1 0.48 1.7E-05 38.4 5.5 44 336-392 16-59 (100)
394 3ctr_A Poly(A)-specific ribonu 88.9 0.71 2.4E-05 37.5 5.7 43 337-392 7-49 (101)
395 3d45_A Poly(A)-specific ribonu 84.6 2.6 8.8E-05 43.4 8.6 54 225-304 440-494 (507)
396 3pq1_A Poly(A) RNA polymerase; 82.2 0.73 2.5E-05 47.1 3.3 48 335-392 52-99 (464)
397 2l08_A Regulator of nonsense t 79.4 0.96 3.3E-05 36.5 2.4 54 335-392 8-63 (97)
398 2l9w_A U4/U6 snRNA-associated- 75.3 4.7 0.00016 33.4 5.4 53 334-392 19-72 (117)
399 1wwh_A Nucleoporin 35, nucleop 26.8 75 0.0026 26.2 4.6 47 335-392 23-69 (119)
400 3d45_A Poly(A)-specific ribonu 24.7 70 0.0024 32.6 4.9 43 336-391 440-482 (507)
401 3uzu_A Ribosomal RNA small sub 24.1 40 0.0014 31.5 2.7 34 226-259 115-148 (279)
402 4e8u_A Putative uncharacterize 20.1 1.5E+02 0.0051 26.0 5.4 47 227-293 14-71 (172)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=6.3e-29 Score=223.38 Aligned_cols=147 Identities=18% Similarity=0.357 Sum_probs=124.5
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~ 72 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN--T---------------KRSRGFGFVTYATVEEVDAAM 72 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC--C---------------CCccceEEEEeCCHHHHHHHH
Confidence 44579999999999999999999999999999999977652 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~ 381 (393)
.+++..|.|+.|.|.++.+....... ....+.++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.+
T Consensus 73 ~~~~~~~~g~~l~v~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 73 NARPHKVDGRVVEPKRAVSREDSQRP---GAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----GKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp HTCSCEETTEECEEEECCC--------------CCSEEEEECCTTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCE
T ss_pred hcCCCEECCEEeeeecccCccccccc---ccCCCcceEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEeecCCCCCc
Confidence 88999999999999998754322211 123356899999999999999999999999 99999999999989999
Q ss_pred ccEEEEEeeec
Q 016231 382 KGIAYVLFKTR 392 (393)
Q Consensus 382 kGfaFVeF~t~ 392 (393)
+|||||+|.+.
T Consensus 146 ~g~afV~F~~~ 156 (196)
T 1l3k_A 146 RGFAFVTFDDH 156 (196)
T ss_dssp EEEEEEEESSH
T ss_pred cceEEEEECCH
Confidence 99999999874
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-28 Score=212.35 Aligned_cols=138 Identities=23% Similarity=0.361 Sum_probs=123.8
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
|+|||+|||+++|+++|+.+|+.||.|.+|+|++++. +.++|||||+|.+.++|..|+ .+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~------------------~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN------------------NKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC------------------CCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6899999999999999999999999999999976541 236699999999999999999 899
Q ss_pred CceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccE
Q 016231 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGf 384 (393)
+..+.|+.|.|.++.+... ....+..+|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++||
T Consensus 63 ~~~~~g~~i~v~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~ 131 (166)
T 3md3_A 63 GKQIENNIVKINWAFQSQQ-------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGY 131 (166)
T ss_dssp TCEETTEECEEEECCCCCC-------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEE
T ss_pred CCccCCCeeEEEEcCCCCC-------CCCCCCceEEECCCCCCCCHHHHHHHHhcc----CCeeEEEEEecCCCCCcceE
Confidence 9999999999999865432 224457899999999999999999999999 99999999999999999999
Q ss_pred EEEEeeec
Q 016231 385 AYVLFKTR 392 (393)
Q Consensus 385 aFVeF~t~ 392 (393)
|||+|.+.
T Consensus 132 afV~f~~~ 139 (166)
T 3md3_A 132 GFVSFTSQ 139 (166)
T ss_dssp EEEEESCH
T ss_pred EEEEeCCH
Confidence 99999874
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=8.8e-28 Score=209.58 Aligned_cols=138 Identities=20% Similarity=0.357 Sum_probs=123.8
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
+++|||+|||+++++++|+.+|+.||.|.+|++++++. + +.++|||||+|.+.++|..|+ .|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~--~---------------~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI--T---------------GQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--C---------------CcceeEEEEEECCHHHHHHHHHHc
Confidence 58999999999999999999999999999999977541 2 346699999999999999999 59
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
|+..+.|+.|.|.++.+... .....+|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|
T Consensus 65 ~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 131 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQY----GRIITSRILVDQVTGVSRG 131 (167)
T ss_dssp TTCEETTEECEEEECCCCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCccCCceEEEEecCCCcc---------cCCCCcEEECCCCCcCCHHHHHHHHHhc----CCEeEEEEEecCCCCCccc
Confidence 99999999999999875432 2345789999999999999999999999 9999999999988999999
Q ss_pred EEEEEeeec
Q 016231 384 IAYVLFKTR 392 (393)
Q Consensus 384 faFVeF~t~ 392 (393)
||||+|.+.
T Consensus 132 ~afV~f~~~ 140 (167)
T 1fxl_A 132 VGFIRFDKR 140 (167)
T ss_dssp EEEEEESSH
T ss_pred eEEEEeCCH
Confidence 999999874
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=8.6e-28 Score=210.52 Aligned_cols=139 Identities=21% Similarity=0.343 Sum_probs=124.3
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
+.++|||+|||+++++++|+.+|+.||.|.+|+|++++. ++.++|||||+|.+.++|..|+ .
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK-----------------TGYSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT-----------------TTEECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC-----------------CCccceEEEEEECCHHHHHHHHHh
Confidence 368999999999999999999999999999999977541 2236699999999999999999 5
Q ss_pred hcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCc
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~k 382 (393)
+|+..+.|+.|.|.++.+... ..+..+|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++
T Consensus 65 l~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~ 131 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GSIVQKNILRDKLTGRPR 131 (168)
T ss_dssp HTTCEETTEECEEEECCCCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSS----SCEEEEEEEECTTTCCEE
T ss_pred cCCCEeCCcEEEEEecCCCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcC----CcEEEEEEEEcCCCCCcc
Confidence 999999999999999875432 2346799999999999999999999999 999999999998899999
Q ss_pred cEEEEEeeec
Q 016231 383 GIAYVLFKTR 392 (393)
Q Consensus 383 GfaFVeF~t~ 392 (393)
|||||+|.+.
T Consensus 132 g~afV~f~~~ 141 (168)
T 1b7f_A 132 GVAFVRYNKR 141 (168)
T ss_dssp EEEEEEESSH
T ss_pred eEEEEEECCH
Confidence 9999999874
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=2.1e-28 Score=214.52 Aligned_cols=138 Identities=19% Similarity=0.391 Sum_probs=121.8
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
++++|||+|||+++|+++|+.+|+.||.|.+|+|++++. ++.++|||||+|.+.++|..||.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~- 63 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA-----------------TGRSRGFGFLSFEKPSSVDEVVK- 63 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT-----------------TSSCCSCEEEEESSTHHHHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC-----------------CCCccceEEEEEccHHHHHHHHh-
Confidence 478999999999999999999999999999999966541 23467999999999999999997
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
++..+.|+.|.|.++.+... ..+..+|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|
T Consensus 64 ~~~~~~g~~i~v~~~~~~~~---------~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 64 TQHILDGKVIDPKRAIPRDE---------QDKTGKIFVGGIGPDVRPKEFEEFFSQW----GTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp SCCEETTEECCCEECCCHHH---------HHHCEEEEEEEECTTCCHHHHHHHHHTT----SCCSEEECCCSSSSSTTSE
T ss_pred cccccCCeEcccccccchhh---------ccCCCeEEECCCCCCCCHHHHHHHHHhC----ccEEEEEEEEcCCCCccce
Confidence 36789999999999865432 2345799999999999999999999999 9999999999998999999
Q ss_pred EEEEEeeec
Q 016231 384 IAYVLFKTR 392 (393)
Q Consensus 384 faFVeF~t~ 392 (393)
||||+|.+.
T Consensus 131 ~afV~f~~~ 139 (167)
T 2cjk_A 131 FGFVTYDSA 139 (167)
T ss_dssp EEEEEESSH
T ss_pred EEEEEECCH
Confidence 999999864
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=1.2e-27 Score=220.94 Aligned_cols=139 Identities=24% Similarity=0.391 Sum_probs=120.6
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
+.+||||||||+++|+++|+++|+.||.|.+|+|++++. + +.++|||||+|.+.++|..|| .
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI--T---------------RRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC--C---------------CCccccccceeCCHHHHHHHHHH
Confidence 468999999999999999999999999999999987652 2 346799999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCc
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~k 382 (393)
+|+..+.|+.|+|.++....... .....+|||+|||+++++++|+++|+.| |.|..|+|++|. +.++
T Consensus 77 ~~~~~~~g~~i~~~~~~~~~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~~~i~~d~--~~~~ 143 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQRDPSLR-------KSGVGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSK 143 (213)
T ss_dssp HTTCEETTEECEEEECCCCTHHH-------HHCTTEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEE
T ss_pred hhhhhcCCccccccccccccccc-------ccccccceECCcccccHHHHHHHHHhhc----CCeEEEEeeccC--CCCc
Confidence 99999999999999986432211 2235689999999999999999999999 999999999985 4579
Q ss_pred cEEEEEeeec
Q 016231 383 GIAYVLFKTR 392 (393)
Q Consensus 383 GfaFVeF~t~ 392 (393)
|||||+|.+.
T Consensus 144 g~~fV~f~~~ 153 (213)
T 4f02_A 144 GYGFVHFETQ 153 (213)
T ss_dssp EEEEEEESSH
T ss_pred eEEEEEeCCH
Confidence 9999999874
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=7.9e-27 Score=205.38 Aligned_cols=140 Identities=19% Similarity=0.351 Sum_probs=120.1
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.++|||+|||+++|+++|+++|+.||.|.+|+|++++.. +. +.++|||||+|.+.++|..|+ .|
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--~~-------------~~~~g~afV~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ--NP-------------PQSKGCCFVTFYTRKAALEAQNAL 67 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSS--SS-------------CEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC--CC-------------CCcceEEEEEECCHHHHHHHHHHh
Confidence 689999999999999999999999999999999887632 11 136799999999999999999 69
Q ss_pred cCceeC---CeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC
Q 016231 304 NMAVIG---GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (393)
Q Consensus 304 ng~~~~---Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~ 380 (393)
|+..+. ++.|.+.++.+... .....++|||+|||+++|+++|+++|+.| |.|..|+|++++ +|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~-~g~ 134 (175)
T 3nmr_A 68 HNMKVLPGMHHPIQMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSF----GQIEECRILRGP-DGL 134 (175)
T ss_dssp TTTCCCTTCSSCCEEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TSC
T ss_pred cCcEEccCCccceEEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC----CCEEEEEEEECC-CCC
Confidence 998776 67888887754321 13356899999999999999999999999 999999999996 699
Q ss_pred CccEEEEEeeec
Q 016231 381 GKGIAYVLFKTR 392 (393)
Q Consensus 381 ~kGfaFVeF~t~ 392 (393)
++|||||+|.+.
T Consensus 135 ~~g~afV~f~~~ 146 (175)
T 3nmr_A 135 SRGCAFVTFTTR 146 (175)
T ss_dssp EEEEEEEEESSH
T ss_pred EEEEEEEEECCH
Confidence 999999999874
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=1.3e-26 Score=204.00 Aligned_cols=133 Identities=22% Similarity=0.467 Sum_probs=118.1
Q ss_pred cccEEEEeCCCccCCHHHHHHHhccc----C-------CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~----G-------~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
+.++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----------------------~~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----------------------QDKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----------------------TTTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----------------------CCCCEEEEEeC
Confidence 47899999999999999999999999 6 66666652 14589999999
Q ss_pred CHHHHHHHHHhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEE
Q 016231 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (393)
Q Consensus 293 s~e~A~~Al~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI 372 (393)
+.++|..||.+|+..|.|+.|.|.++..... .....+|||+|||+.+++++|+++|+.| |.|..|+|
T Consensus 60 ~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i 126 (172)
T 2g4b_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------LPGAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNL 126 (172)
T ss_dssp SHHHHHHHGGGTTCEETTEECEEECCSSCCC---------CTTTTCEEEECCCTTCCHHHHHHHHHTT----SCEEEEEE
T ss_pred CHHHHHHHHHhCCcEecCceeeecCCcccCC---------CCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCceEEEE
Confidence 9999999999999999999999998754321 2346899999999999999999999999 99999999
Q ss_pred eecCCCCCCccEEEEEeeec
Q 016231 373 IRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 373 ~~d~~tg~~kGfaFVeF~t~ 392 (393)
++++.+|.++|||||+|.+.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp EECTTTCSEEEEEEEEESST
T ss_pred EecCCCCCcceEEEEEeCCH
Confidence 99998999999999999875
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=2.7e-27 Score=215.86 Aligned_cols=147 Identities=18% Similarity=0.374 Sum_probs=122.3
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-h
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~-l 303 (393)
.++|||+|||+++|+++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..||. |
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV--T---------------MKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C--C----------------CCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC--C---------------CccCceEEEEeCCHHHHHHHHHHc
Confidence 68999999999999999999999999999999966541 2 2366999999999999999994 9
Q ss_pred cCceeCCeEEEEeecCCCcccCCCC--CCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCC
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGE--DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~--~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~ 381 (393)
|+..|.|+.|.|.++.......... ........++|||+|||.++++++|+++|+.| |.|..|+|++++.+|.+
T Consensus 91 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF----GKIKSATLARDPTTGKH 166 (216)
T ss_dssp SSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS----SCEEEEEEEECTTTCCE
T ss_pred cCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc----CCeeEEEEEecCCCCCc
Confidence 9999999999999876542111000 00012356899999999999999999999999 99999999999999999
Q ss_pred ccEEEEEeeec
Q 016231 382 KGIAYVLFKTR 392 (393)
Q Consensus 382 kGfaFVeF~t~ 392 (393)
+|||||+|.+.
T Consensus 167 ~g~afV~F~~~ 177 (216)
T 2qfj_A 167 KGYGFIEYEKA 177 (216)
T ss_dssp EEEEEEEESSH
T ss_pred CceEEEEecCH
Confidence 99999999864
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=3.4e-26 Score=205.86 Aligned_cols=142 Identities=22% Similarity=0.451 Sum_probs=118.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhccc----C-------CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~----G-------~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
.+++|||+|||+++|+++|+++|+.| | .|.++.+ +.++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----------------------~~~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------------------NQDKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----------------------ETTTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----------------------cCCCCEEEEEeC
Confidence 47999999999999999999999999 4 4555544 125699999999
Q ss_pred CHHHHHHHHHhcCceeCCeEEEEeecCCCcccCCCC-----------CCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCC
Q 016231 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGE-----------DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (393)
Q Consensus 293 s~e~A~~Al~lng~~~~Gr~I~V~~a~~~~~~~~~~-----------~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~ 361 (393)
+.++|..||.||+..|.|+.|.|.++.......... ......+.++|||+|||+.+++++|+++|+.|
T Consensus 60 ~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~- 138 (198)
T 2yh0_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF- 138 (198)
T ss_dssp CSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-
T ss_pred CHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-
Confidence 999999999999999999999999986542211100 01112467899999999999999999999999
Q ss_pred CCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 362 DLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 362 ~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|.|..|+|++++.+|.++|||||+|.+.
T Consensus 139 ---G~v~~~~~~~~~~~~~~~g~afV~f~~~ 166 (198)
T 2yh0_A 139 ---GPLKAFNLVKDSATGLSKGYAFCEYVDI 166 (198)
T ss_dssp ---SCEEEEEEEECTTTCSEEEEEEEEESSS
T ss_pred ---CCccEEEEeecCCCCCcceEEEEEECCH
Confidence 9999999999988999999999999874
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=1.1e-25 Score=208.02 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=116.8
Q ss_pred cccEEEEeCCC-ccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 224 LLRTIFVGNLP-LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 224 ~~rtVFVgNLp-~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
+.++|||+||| +.+|+++|+.+|+.||.|.+|+|+++ ++|||||+|.+.++|+.||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46899999999 89999999999999999999998432 2489999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcccCCC-----C-----------------------CCCCcCCcceeeeCCCCCCCCHHHH
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLKG-----E-----------------------DAPLYDIKKTVFVGNLPFDVKDEEI 353 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~~-----~-----------------------~~~~~~~~~tLfVgNLp~~~teedL 353 (393)
.|||..|.|+.|.|.++......... . ......+.++|||+|||+++|+++|
T Consensus 61 ~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L 140 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 140 (205)
T ss_dssp HHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHH
T ss_pred HhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHH
Confidence 69999999999999998643210000 0 0001245678999999999999999
Q ss_pred HHHhhcCCCCCCCe--EEEEEeecCCCCCCccEEEEEeeec
Q 016231 354 YQLFCGLNDLESSV--EAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 354 ~e~F~~~~~~~G~I--~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+++|+.| |.| ..|+|+.+. |.++|||||+|.+.
T Consensus 141 ~~~F~~~----G~v~~~~v~~~~~~--~~~~g~gfV~f~~~ 175 (205)
T 3tyt_A 141 FEICDEL----GVKRPTSVKVFSGK--SERSSSGLLEWDSK 175 (205)
T ss_dssp HHHHHHH----TCCCCSEEEECSCC--SSSSEEEEEECSSH
T ss_pred HHHHHhc----CCcceEEEEEEcCC--CCCceEEEEEeCCH
Confidence 9999999 888 899998874 56789999999863
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.2e-25 Score=215.49 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=111.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.+..++|||+|||+++|+++|+.+|+.||.|.+|+|++++. .++|||||+|.+.++|..||
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~A~~A~ 98 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-------------------KNFRFARIEFARYDGALAAI 98 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-------------------SSSEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-------------------CCcEEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999977541 13589999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCC-CeEEEEEeecCCCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRV 380 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G-~I~~VrI~~d~~tg~ 380 (393)
.+|+..|.|+.|.|.++. .++|||+|||+.+++++|+++|..| | .|..|+|++++. |.
T Consensus 99 ~~~~~~~~g~~i~v~~~~----------------~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~-~~ 157 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHLT----------------ECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRF-NT 157 (292)
T ss_dssp TTTTCEETTEECEEEECC----------------SCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC-------
T ss_pred HhCCcEeCCcEEEEEECC----------------CCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCC-CC
Confidence 999999999999999863 4799999999999999999999999 9 999999999965 88
Q ss_pred CccEEEEEeeec
Q 016231 381 GKGIAYVLFKTR 392 (393)
Q Consensus 381 ~kGfaFVeF~t~ 392 (393)
++|||||+|.+.
T Consensus 158 ~~g~afV~f~~~ 169 (292)
T 2ghp_A 158 SRRFAYIDVTSK 169 (292)
T ss_dssp -CCEEEEECSSH
T ss_pred cceEEEEEECCH
Confidence 999999999864
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=3.2e-25 Score=210.83 Aligned_cols=127 Identities=24% Similarity=0.353 Sum_probs=117.1
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|..|+|.+ ++|||||+|.+.++|..|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~~ 76 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAKA 76 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999998832 3489999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~ 381 (393)
.+|+..|.|+.|.|.++.+ ..+|||+|||+.+|+++|+++|+.| |.|..|+|+++ .+|.+
T Consensus 77 ~l~g~~i~g~~l~v~~a~~---------------~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~-~~g~~ 136 (261)
T 3sde_A 77 ELDGTILKSRPLRIRFATH---------------GAALTVKNLSPVVSNELLEQAFSQF----GPVEKAVVVVD-DRGRA 136 (261)
T ss_dssp HHTTCEETTEECEEEECCC---------------SSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEE-TTSCE
T ss_pred HcCCcEECCceeEeeeccc---------------CCcccccCCCCCCCHHHHHHHHHhc----CCeEEEEeeeC-CCCCc
Confidence 5999999999999999853 4689999999999999999999999 99999999999 58999
Q ss_pred ccEEEEEeeec
Q 016231 382 KGIAYVLFKTR 392 (393)
Q Consensus 382 kGfaFVeF~t~ 392 (393)
+|||||+|.+.
T Consensus 137 ~g~afV~f~~~ 147 (261)
T 3sde_A 137 TGKGFVEFAAK 147 (261)
T ss_dssp EEEEEEEESSH
T ss_pred CcEEEEEeCCH
Confidence 99999999864
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=9.2e-26 Score=199.79 Aligned_cols=138 Identities=22% Similarity=0.334 Sum_probs=115.0
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.....++|||+|||+++|+++|+.+|..||.|..+.+ .+. ..+.++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~~~-----------------~~~~~~g~afV~f~~~~~a~~A 70 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDV-----------------RTGTNRKFGYVDFESAEDLEKA 70 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CEE-----------------EEETTTTEEEEEESSHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-EEC-----------------CCCccccEEEEEECCHHHHHHH
Confidence 3455799999999999999999999999998765322 111 1234679999999999999999
Q ss_pred HHhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC
Q 016231 301 LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (393)
Q Consensus 301 l~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~ 380 (393)
|+||+..|.|+.|.|.++.+... ....+.++|||+|||+++++++|+++|+.| |.|..+ ..+|.
T Consensus 71 ~~l~g~~~~g~~l~v~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~-----~~~~~ 134 (175)
T 1fje_B 71 LELTGLKVFGNEIKLEKPKGRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGK 134 (175)
T ss_dssp HHGGGEEETTEEEEEECCCCSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEE-----CSSSS
T ss_pred HhcCCCEeCCeEEEEecCCCccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEe-----cCCCC
Confidence 99999999999999999875432 123457899999999999999999999999 877765 46789
Q ss_pred CccEEEEEeeec
Q 016231 381 GKGIAYVLFKTR 392 (393)
Q Consensus 381 ~kGfaFVeF~t~ 392 (393)
++|||||+|.+.
T Consensus 135 ~~g~afV~f~~~ 146 (175)
T 1fje_B 135 SKGIAYIEFKSE 146 (175)
T ss_dssp CCSEEEEECSSH
T ss_pred CceEEEEEECCH
Confidence 999999999864
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=1.6e-24 Score=206.84 Aligned_cols=125 Identities=16% Similarity=0.274 Sum_probs=115.3
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
+++|||+|||+++|+++|+.+|+.|| |.+|.+. .++|||||+|.+.++|..|+ .|
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~-----------------------~~~g~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-----------------------KYKGTAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE-----------------------TTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe-----------------------cCCCEEEEEeCCHHHHHHHHHHc
Confidence 68999999999999999999999999 8888871 15589999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCcc
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kG 383 (393)
|+..|.|+.|.|.++. ...+|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|
T Consensus 78 ~~~~~~g~~i~v~~~~---------------~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 138 (284)
T 3smz_A 78 HQSRLRERELSVQLQP---------------TDALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTGQSKG 138 (284)
T ss_dssp TTCEETTEECEEEECC---------------CSCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCeeCCeEEEEEecC---------------CCCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCCccce
Confidence 9999999999999863 23699999999999999999999999 9999999999999999999
Q ss_pred EEEEEeeec
Q 016231 384 IAYVLFKTR 392 (393)
Q Consensus 384 faFVeF~t~ 392 (393)
||||+|.+.
T Consensus 139 ~afV~f~~~ 147 (284)
T 3smz_A 139 YGFAEYMKK 147 (284)
T ss_dssp EEEEEESSH
T ss_pred EEEEEECCH
Confidence 999999863
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=2e-24 Score=206.19 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=123.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+.+|+++|+.+|+.||.|..|+++.++. + +.++|||||+|.+.++|..|+ .
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER--T---------------GQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC--C---------------CccceEEEEEECCHHHHHHHHHH
Confidence 357999999999999999999999999999999976541 2 346699999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCC-CHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCC
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~-teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~ 381 (393)
||+..|.|+.|.|.++.+.... .......+|||+|||+++ ++++|+++|+.| |.|..|+|++++ +|.+
T Consensus 157 l~~~~~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~----G~i~~v~i~~~~-~g~~ 225 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAV----HSPTFCQLACGQ-DGQL 225 (284)
T ss_dssp HTTCEETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS----SCCSEEEEEECS-SCCE
T ss_pred hCCCEeCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCC----CCeEEEEEEECC-CCCc
Confidence 9999999999999999765322 123456899999999995 999999999999 999999999996 7999
Q ss_pred ccEEEEEeeec
Q 016231 382 KGIAYVLFKTR 392 (393)
Q Consensus 382 kGfaFVeF~t~ 392 (393)
+|||||+|.+.
T Consensus 226 ~g~afV~f~~~ 236 (284)
T 3smz_A 226 KGFAVLEYETA 236 (284)
T ss_dssp EEEEEEECSSH
T ss_pred ccEEEEEeCCH
Confidence 99999999874
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=8.6e-25 Score=209.51 Aligned_cols=145 Identities=17% Similarity=0.267 Sum_probs=118.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G-~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
..++|||+|||+.+++++|+.+|+.|| .|..|+|++++. +.++|||||+|.+.++|..|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~------------------~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF------------------NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC------------------CCcceEEEEEECCHHHHHHHHH
Confidence 368999999999999999999999999 999999966541 2356999999999999999995
Q ss_pred -hcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCC-CCHHHHHHHhhcCCCCCCCeEEEEEeecCC-CC
Q 016231 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPH-MR 379 (393)
Q Consensus 303 -lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~-~teedL~e~F~~~~~~~G~I~~VrI~~d~~-tg 379 (393)
||+..|.|+.|.|.++.+....... .....+..+|||+|||+. +++++|+++|+.| |.|..|+|++++. ||
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGF----GSIEKINIPAGQKEHS 251 (292)
T ss_dssp HHTTCEETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGG----SCEEEEECCSCCC---
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhcc----CCeeEEEEEecCCcCC
Confidence 9999999999999999765433221 122446789999999999 9999999999999 9999999999976 59
Q ss_pred CCccEEEEEeeec
Q 016231 380 VGKGIAYVLFKTR 392 (393)
Q Consensus 380 ~~kGfaFVeF~t~ 392 (393)
.++|||||+|.+.
T Consensus 252 ~~~g~afV~F~~~ 264 (292)
T 2ghp_A 252 FNNCCAFMVFENK 264 (292)
T ss_dssp CCCEEEEEEESSH
T ss_pred CCceEEEEEeCCH
Confidence 9999999999874
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=9.6e-24 Score=201.24 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=116.3
Q ss_pred CCcccEEEEeCCCccCCHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~----~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
....++|||+|||+++|+++|+ .+|+.||.|.+|+|++ + +.++|||||+|.+.++|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-----~---------------~~~~g~afV~f~~~~~a 65 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-----S---------------LKMRGQAFVIFKEVSSA 65 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-----C---------------CCcceEEEEEECCHHHH
Confidence 4568999999999999999966 8999999999998843 1 23669999999999999
Q ss_pred HHHH-HhcCceeCCeEEEEeecCCCcccCC---C----------------------------------------------
Q 016231 298 EAAL-AFNMAVIGGNHIRLDRACPPRKKLK---G---------------------------------------------- 327 (393)
Q Consensus 298 ~~Al-~lng~~~~Gr~I~V~~a~~~~~~~~---~---------------------------------------------- 327 (393)
..|| .||+..|.|+.|.|.++........ +
T Consensus 66 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (282)
T 3pgw_A 66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMP 145 (282)
T ss_pred HHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCC
Confidence 9999 7999999999999999854321000 0
Q ss_pred -----------------------------------------------------CCCCCcCCcceeeeCCCCCCCCHHHHH
Q 016231 328 -----------------------------------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (393)
Q Consensus 328 -----------------------------------------------------~~~~~~~~~~tLfVgNLp~~~teedL~ 354 (393)
.......+.++|||+|||..+++++|+
T Consensus 146 ~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 225 (282)
T 3pgw_A 146 PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLS 225 (282)
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHH
Confidence 000112246789999999999999999
Q ss_pred HHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 355 e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
++|+.| |.|..|+|+.+. +|||||+|.+.
T Consensus 226 ~~F~~~----G~i~~v~~~~~~-----~g~afV~f~~~ 254 (282)
T 3pgw_A 226 MLFNQF----PGFKEVRLVPGR-----HDIAFVEFDNE 254 (282)
T ss_pred HHHHhc----CCeEEEEEecCC-----CcEEEEEeCCH
Confidence 999999 999999998663 68999999874
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=3e-23 Score=193.35 Aligned_cols=139 Identities=18% Similarity=0.283 Sum_probs=115.3
Q ss_pred CcccEEEEeCCCc-cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~-~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..+++|||+|||+ ++++++|+.+|+.||.|.+|+|++++ +|||||+|.+.++|..||
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 4579999999999 99999999999999999999995432 389999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCcccCCC------------------CC--------CCCcCCcceeeeCCCCCCCCHHHHH
Q 016231 302 -AFNMAVIGGNHIRLDRACPPRKKLKG------------------ED--------APLYDIKKTVFVGNLPFDVKDEEIY 354 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~~~~~~------------------~~--------~~~~~~~~tLfVgNLp~~~teedL~ 354 (393)
.||+..|.|+.|.|.++.+....... .. .....+..+|||+|||+.+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 59999999999999998643110000 00 0113456899999999999999999
Q ss_pred HHhhcCCCCCC-CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 355 QLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 355 e~F~~~~~~~G-~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
++|+.| | .|..|+|+.+ .+|||||+|.+.
T Consensus 170 ~~f~~~----G~~i~~v~i~~~-----~~g~afV~f~~~ 199 (229)
T 2adc_A 170 VLFSSN----GGVVKGFKFFQK-----DRKMALIQMGSV 199 (229)
T ss_dssp HHHHTT----SCCEEEEEECSS-----STTCEEEEESSH
T ss_pred HHHHHc----CCCeeEEEEEEC-----CCcEEEEEECCH
Confidence 999999 9 9999999754 378999999874
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=1.6e-23 Score=189.41 Aligned_cols=137 Identities=18% Similarity=0.300 Sum_probs=114.3
Q ss_pred ccEEEEeCCCc-cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~-~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
+++|||+|||+ .+++++|+.+|+.||.|.+|+|++++ +|||||+|.+.++|..|+ .
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~~ 60 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMSH 60 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHH
Confidence 58999999999 99999999999999999999984421 389999999999999999 5
Q ss_pred hcCceeCCeEEEEeecCCCcccCCC--------------------------CCCCCcCCcceeeeCCCCCCCCHHHHHHH
Q 016231 303 FNMAVIGGNHIRLDRACPPRKKLKG--------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~~~~--------------------------~~~~~~~~~~tLfVgNLp~~~teedL~e~ 356 (393)
||+..|.|+.|.|.++.+....... .......+..+|||+|||..+++++|+++
T Consensus 61 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 140 (198)
T 1qm9_A 61 LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140 (198)
T ss_dssp HTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHH
T ss_pred hCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHH
Confidence 9999999999999998643211000 00011345789999999999999999999
Q ss_pred hhcCCCCCC-CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 357 FCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 357 F~~~~~~~G-~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+.| | .|..|+|+.+ .+|||||+|.+.
T Consensus 141 f~~~----G~~v~~v~i~~~-----~~g~afV~f~~~ 168 (198)
T 1qm9_A 141 FSSN----GGVVKGFKFFQK-----DRKMALIQMGSV 168 (198)
T ss_dssp HHHT----TSCCCEEEESST-----TSSCEEEECSSH
T ss_pred HHHc----CCCceEEEEEeC-----CCcEEEEEeCCH
Confidence 9999 9 9999999765 379999999864
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=3.3e-21 Score=161.73 Aligned_cols=108 Identities=17% Similarity=0.262 Sum_probs=71.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+|||+|||+++|+++|+++|+.||.|.+|+|+++. + .++|||||+|.+.++|+.|| .|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~----~---------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE----N---------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET----T---------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC----C---------------CCCceEEEEECCHHHHHHHHHHc
Confidence 5689999999999999999999999999999997754 1 15699999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHH
Q 016231 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teed 352 (393)
|+..|.|+.|.|.++.+........ ........+|||+|||+++|++.
T Consensus 66 ~~~~~~g~~i~V~~a~~~~~~~~~~-~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKSRKEREAEL-GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TTCEETTEECEEEESSCCCC-----------------------------
T ss_pred CCCEECCEEEEEEECCCcccccccc-ccccCCCCceEeCCCCCCccccc
Confidence 9999999999999987543222111 11123446899999999999863
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=139.26 Aligned_cols=79 Identities=18% Similarity=0.319 Sum_probs=71.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+|||+|||+++|+++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..|+ .|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV--A---------------GHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS--S---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC--C---------------CcccccEEEEECCHHHHHHHHHHh
Confidence 57899999999999999999999999999999987652 2 346699999999999999999 69
Q ss_pred cCceeCCeEEEEeecCC
Q 016231 304 NMAVIGGNHIRLDRACP 320 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~ 320 (393)
||..|.|+.|.|.+|.|
T Consensus 82 ng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 82 NGLRLQSKTIKVSYARP 98 (99)
T ss_dssp TTCEETTEECEEEECCB
T ss_pred CCCEECCEEEEEEEeeC
Confidence 99999999999999864
No 23
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=135.24 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=81.1
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
++|||+|||+++|+++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|..|+ .||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 47999999999999999999999999999998543 2389999999999999999 599
Q ss_pred CceeCCeEEEEeecCCCcccCCCCCC-CCcCCcceeeeCCCC
Q 016231 305 MAVIGGNHIRLDRACPPRKKLKGEDA-PLYDIKKTVFVGNLP 345 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~~~~~~~~~-~~~~~~~tLfVgNLp 345 (393)
+..|.|+.|.|.++.+.......... .......+||||||+
T Consensus 59 g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 99999999999999875543322221 122346789999996
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.1e-17 Score=139.27 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=88.2
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|.+|+|+++. .++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--------------------ETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--------------------TTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--------------------CCCcEEEEEECCHHHHHHHHH
Confidence 347899999999999999999999999999999996432 24589999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcC
Q 016231 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGL 360 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~ 360 (393)
.|||..|.|+.|.|.++.+.... ++++...++++|.++|+.|
T Consensus 66 ~l~g~~~~g~~l~v~~a~~~~~~-----------------~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 66 HLSGFNVSNRYLVVLYYNANRAF-----------------QKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp HHTTCBSSSCBCEEEECCHHHHT-----------------TTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEECCeEEEEEEecCChhh-----------------hhhhHhHhHHHHHHHHHHh
Confidence 59999999999999999754321 5678888999999999999
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=135.36 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=73.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
.+.++|||+|||+++++++|+++|+.||.|.+|+|++++. + +.++|||||+|.+.++|..||
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~--t---------------g~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR--T---------------RKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC--C---------------CceeeEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999988652 2 346799999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++...
T Consensus 67 ~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 67 NLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHTTCEETTEECEEEECSTT
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 69999999999999998643
No 26
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=9.5e-17 Score=126.92 Aligned_cols=80 Identities=30% Similarity=0.408 Sum_probs=71.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN--T---------------GRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT--T---------------CCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC--C---------------CccccEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999977642 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeec
Q 016231 302 AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a 318 (393)
.+++..|.|+.|.|.+|
T Consensus 71 ~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 71 DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HSSCEEETTEEEEEEEC
T ss_pred HhCCCEECCEEEEEEeC
Confidence 88999999999999875
No 27
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.4e-16 Score=124.45 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=71.0
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
.+|||+|||+++++++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..|+ .||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ--T---------------GSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT--T---------------CCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC--C---------------CCccceEEEEECCHHHHHHHHHHhc
Confidence 6899999999999999999999999999999977642 2 236699999999999999999 599
Q ss_pred CceeCCeEEEEeecCCC
Q 016231 305 MAVIGGNHIRLDRACPP 321 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~ 321 (393)
+..|.|+.|.|.++.+.
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99999999999999754
No 28
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=134.51 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=71.8
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++|+++|+.+|+.||.|.+|+|++++. + .++|||||+|.+.++|..||.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~---g---------------~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH---K---------------AFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT---T---------------SCCCEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC---C---------------CCccEEEEEECCHHHHHHHHH
Confidence 4468999999999999999999999999999999977641 2 366999999999999999999
Q ss_pred hcCceeCCeEEEEeecCC
Q 016231 303 FNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~ 320 (393)
+|+..|.|+.|.|.++..
T Consensus 71 ~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 71 TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SSCCCCTTTTCEEEEHHH
T ss_pred cCCCEECCEEEEEEEchH
Confidence 999999999999998753
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=133.51 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=73.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++|+++|+.+|+.||.|..|.|+.+. + +.++|||||+|.+.++|+.|+ .
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR---T---------------SKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST---T---------------TTCCCEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C---------------CCcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999996653 2 236699999999999999999 6
Q ss_pred hcCceeCCeEEEEeecCCCccc
Q 016231 303 FNMAVIGGNHIRLDRACPPRKK 324 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~~ 324 (393)
||+..|.|+.|.|.++.++...
T Consensus 68 l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 68 MNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp CSSCBCSSSBCEEEECCCSSCS
T ss_pred hCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999866543
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=131.96 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=69.7
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G-~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~- 302 (393)
+++|||+|||+++|+++|+.+|+.|| .|.+|+|++++ .+ +.++|||||+|.+.++|..||.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~--~t---------------~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK--SS---------------GQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS--SS---------------CCCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC--CC---------------CCcCceEEEEecCHHHHHHHHHh
Confidence 47899999999999999999999999 79999986654 22 3466999999999999999994
Q ss_pred h-cCceeCCeEEEEeecCCCc
Q 016231 303 F-NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 303 l-ng~~~~Gr~I~V~~a~~~~ 322 (393)
+ |+..|.|+.|.|.++.+..
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp TTTEEEETTEEEEEECCCSCC
T ss_pred cCCCeEECCEEEEEEEcCCCC
Confidence 5 4668999999999997653
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=125.22 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=70.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++++++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..|+ .
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA--T---------------GKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999977541 2 236699999999999999999 5
Q ss_pred hcCceeCCeEEEEeecCC
Q 016231 303 FNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~ 320 (393)
||+..|.|+.|.|.++.+
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999999999999999864
No 32
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=9.5e-17 Score=140.69 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=79.5
Q ss_pred CCceEEEEeeCCHHHHHHHH-HhcCceeCCeEEEEeecCCCccc----CCCCCCCCcCCcceeeeCCCCCCCCHHHHHHH
Q 016231 282 ADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKK----LKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (393)
Q Consensus 282 ~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~V~~a~~~~~~----~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~ 356 (393)
.++|||||+|.+.++|+.|+ .+++....+..+.+......... .............+|||+|||+++++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 47799999999999999999 56654333333333322111000 00011122345789999999999999999999
Q ss_pred hhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 357 FCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 357 F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 91 F~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 91 FEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDK 122 (158)
T ss_dssp HHHH----SCEEEEECCCCSSCTTSCCEEEEEESBH
T ss_pred HHhc----CCeEEEEEeecCCCCccceEEEEEECCH
Confidence 9999 9999999999999999999999999874
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=128.46 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT--T---------------GQSKGFAFISFHRREDAARAI 74 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS--S---------------CSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC--C---------------CceeeEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999977542 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 75 ~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 75 AGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHTTTCEETTEECEEEESSCCC
T ss_pred HHcCCCeeCCcEEEEEECCCCC
Confidence 599999999999999997653
No 34
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.9e-16 Score=124.36 Aligned_cols=79 Identities=29% Similarity=0.439 Sum_probs=70.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE--T---------------EKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT--T---------------TEECSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC--C---------------CccccEEEEEECCHHHHHHHHH
Confidence 3579999999999999999999999999999999977642 2 235699999999999999999
Q ss_pred HhcCceeCCeEEEEeec
Q 016231 302 AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a 318 (393)
.||+..|.|+.|.|.++
T Consensus 68 ~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 68 NMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEECCcEEEEEEc
Confidence 79999999999999987
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=127.40 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=73.6
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ + +.++|||||+|.+.++|..||
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR---A---------------GKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---T---------------SCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---C---------------CCEEeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997754 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.++.
T Consensus 76 ~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 76 MKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp HHHTTEESSSCEEEEEECCCCS
T ss_pred HHhCCCEECCEEEEEEECCCCC
Confidence 799999999999999997653
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=7.1e-17 Score=131.74 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=68.5
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCC--eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE--IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~--I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.-.||||+|||+.+|+++|+++|+.||. |.+|+|++++. + +.++|||||+|.+.++|..||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~--t---------------g~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ--T---------------QQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS--S---------------SSCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC--C---------------CCCceEeEEEECCHHHHHHHH
Confidence 3578999999999999999999999995 56888876552 2 346799999999999999999
Q ss_pred -HhcCc----eeCCeEEEEeecC
Q 016231 302 -AFNMA----VIGGNHIRLDRAC 319 (393)
Q Consensus 302 -~lng~----~~~Gr~I~V~~a~ 319 (393)
.||+. .+.||.|.|.+|.
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEECC
T ss_pred HHhcCCCCCceECCEEEEEEEcc
Confidence 68986 5899999999985
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=6.4e-16 Score=128.51 Aligned_cols=84 Identities=21% Similarity=0.335 Sum_probs=74.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA--T---------------GKSKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC--C---------------CCcceEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999977542 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCC
T ss_pred HHhCCCEECCEEEEEEEccCCC
Confidence 699999999999999997653
No 38
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=2.3e-16 Score=124.83 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=72.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.++|||+|||+++++++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..|+.+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~a~~~~ 68 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF--S---------------GHPKGFAYIEFSDKESVRTSLALD 68 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS--S---------------SSCCEEEEEEESSTHHHHHHGGGT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHHhcC
Confidence 68999999999999999999999999999999977542 2 236699999999999999999999
Q ss_pred CceeCCeEEEEeecCCC
Q 016231 305 MAVIGGNHIRLDRACPP 321 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~ 321 (393)
+..|.|+.|.|.++.++
T Consensus 69 g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 69 ESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TCEETTEECEEEETTTT
T ss_pred CCEECCcEEEEEEccCC
Confidence 99999999999998653
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=5.5e-17 Score=129.73 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=67.0
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G--~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
.+|||+|||+++|+++|+.+|+.|| .|.+|+|++++. + +.++|||||+|.+.++|..|| .
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~--~---------------g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA--N---------------GQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT--T---------------CCEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC--C---------------CccCcEEEEEECCHHHHHHHHHH
Confidence 5799999999999999999999999 999999977642 2 346799999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
|||..|.|+.|.|.++.++
T Consensus 65 l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp GGGSCSSSCCCEECCC---
T ss_pred cCCCeeCCEEEEEEECCCC
Confidence 9999999999999999764
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.7e-16 Score=126.85 Aligned_cols=82 Identities=24% Similarity=0.405 Sum_probs=72.9
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|.+|+|++++. .++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999976531 14589999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.++.
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 73 AAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHTTEEETTEEEEEEECCCTT
T ss_pred HHhCCCCcCCCeEEEEECCCCc
Confidence 599999999999999998654
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=126.82 Aligned_cols=84 Identities=27% Similarity=0.421 Sum_probs=74.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE--K---------------QRPRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT--T---------------CSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--C---------------CCCCceEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999966542 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.+|+..|.|+.|.|.++.++.
T Consensus 70 ~~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 70 NMHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp HHCCCBSSSCBCEEEECCCCC
T ss_pred HhCCCEECCeEEEEEECCCCc
Confidence 999999999999999997654
No 42
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=4.8e-16 Score=126.97 Aligned_cols=83 Identities=27% Similarity=0.359 Sum_probs=73.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.|| |..|+|++++. + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD--T---------------DKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS--S---------------CSEEEEEEEEESSHHHHHHHG
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999997 99999977642 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 74 TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp GGTTCEETTEECEEEECCCCC
T ss_pred hhCCCeECCeEEEEEEecCCC
Confidence 999999999999999997653
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=126.09 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=73.6
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
+.++|||+|||+++++++|+.+|+.||.|..|+|++++.. .+ ++.++|||||+|.+.++|..|| .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~g-------------t~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK-AG-------------VLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECT-TC-------------CEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CC-------------CcCcccEEEEEECCHHHHHHHHHH
Confidence 4789999999999999999999999999999999876521 01 1136699999999999999999 5
Q ss_pred hcCceeCCeEEEEeecCCCc
Q 016231 303 FNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~ 322 (393)
||+..|.|+.|.|.++.+..
T Consensus 70 l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp STTCEETTEECEEECSSCSS
T ss_pred hCCCeeCCeEEEEEEccCCC
Confidence 99999999999999997654
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=4.5e-16 Score=127.23 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=72.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|..|+|+.++ + +.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP---D---------------GSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS---S---------------SCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C---------------CCcCcEEEEEeCCHHHHHHHHH
Confidence 347999999999999999999999999999999997754 1 236699999999999999999
Q ss_pred HhcCceeCC---eEEEEeecCCCc
Q 016231 302 AFNMAVIGG---NHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~G---r~I~V~~a~~~~ 322 (393)
.||+..|.| +.|.|.++.+..
T Consensus 75 ~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 75 ALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHcCCccCCCCCccEEEEECccCc
Confidence 699999998 999999997654
No 45
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=125.36 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=71.1
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|.+|+|++++. +.++|||||+|.+.++|..||
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~------------------g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE------------------GKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT------------------SCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC------------------CCCceEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999999977541 235699999999999999999
Q ss_pred HhcCceeCCeEEEEeecC
Q 016231 302 AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~ 319 (393)
.||+..|.|+.|.|.++.
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 599999999999999975
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=125.52 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=74.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|..|+|++++ .+ +.++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~---------------~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS--LT---------------KKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT--TT---------------CCCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC--CC---------------CCcCeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999986643 12 346699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcc
Q 016231 302 AFNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~ 323 (393)
.||+..|.|+.|.|.++.+...
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCST
T ss_pred HhCCCEECCcEEEEEEcCCCcc
Confidence 7999999999999999986543
No 47
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.4e-16 Score=125.06 Aligned_cols=83 Identities=19% Similarity=0.360 Sum_probs=73.3
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.....++|||+|||+++|+++|+.+|+.||.|..|+|+.++ . .++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~----~---------------~~~g~afV~f~~~~~a~~A 71 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE----R---------------GSKGFGFVTFENSADADRA 71 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT----T---------------TTCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC----C---------------CCcEEEEEEECCHHHHHHH
Confidence 34557999999999999999999999999999999996643 1 1458999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCCc
Q 016231 301 L-AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~~ 322 (393)
| .||+..|.|+.|.|.++.+..
T Consensus 72 ~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 72 REKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHHHTTCEETTEECEEEECCSSC
T ss_pred HHHhCCCEECCEEEEEEEcccCC
Confidence 9 699999999999999997653
No 48
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=4.6e-16 Score=129.53 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=73.7
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ--T---------------NLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS--S---------------CSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--C---------------CCcCccEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999977542 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 86 ~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHTTCEETTEECEEECCCCSC
T ss_pred HcCCCEECCEEEEEEEcCCCC
Confidence 799999999999999997654
No 49
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=127.46 Aligned_cols=84 Identities=27% Similarity=0.390 Sum_probs=73.2
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+.+++++|+.+|+.|| |..|+|++++. + .+.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~--------------~g~~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--N--------------PERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS--C--------------TTSBCSCEEEEESSHHHHHHHHG
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC--C--------------CCCcCeEEEEEECCHHHHHHHHh
Confidence 3468999999999999999999999999 99999966542 1 02366999999999999999999
Q ss_pred hcCceeCCeEEEEeecCCCcc
Q 016231 303 FNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~~ 323 (393)
||+..|.|+.|.|.++.+...
T Consensus 76 l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 76 LNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp GGTCEETTEECEEEECCCCCC
T ss_pred cCCCEeCCcEEEEEEccCCCC
Confidence 999999999999999976543
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=127.83 Aligned_cols=84 Identities=26% Similarity=0.352 Sum_probs=73.5
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++++++|+.+|+.||.|..|.|+.++. + +.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH--T---------------KAPRGFAFVRFHDRRDAQDAE 72 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS--S---------------CSBCSCEEEEESSSSHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC--C---------------CCCCeEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999966541 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 73 AAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHHSSCCBTTBCCEEEECSSCC
T ss_pred HHcCCCEECCcEEEEEECCcCC
Confidence 599999999999999997543
No 51
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.8e-16 Score=123.61 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=72.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|.|++++. + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ--S---------------RRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS--S---------------SSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC--C---------------CCcccEEEEEECCHHHHHHHH
Confidence 44579999999999999999999999999999999977542 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecC
Q 016231 302 -AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~ 319 (393)
.||+..|.|+.|.|.++.
T Consensus 75 ~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 75 ERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHTTEEETTEEEEEECCS
T ss_pred HHhCCCEECCEEEEEEecC
Confidence 599999999999999985
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=125.73 Aligned_cols=85 Identities=29% Similarity=0.430 Sum_probs=74.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|+.++. + +.++|||||+|.+.++|..||
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE--T---------------EKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS--S---------------CCCSSEEEECCSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999866541 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCcc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~~ 323 (393)
.||+..|.|+.|.|.++.+...
T Consensus 72 ~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 72 DNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp HHHTTEEETTEEEEEEECCCCCC
T ss_pred HHhCCCEECCcEEEEEeCCCCCC
Confidence 6999999999999999976543
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=5.4e-16 Score=125.07 Aligned_cols=81 Identities=16% Similarity=0.336 Sum_probs=72.2
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
+++|||+|||+.+++++|+.+|+.||.|.+|+|+.++. + +.++|||||+|.+.++|..|+ .|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ--T---------------GRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT--T---------------CCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC--C---------------CccceEEEEEECCHHHHHHHHHHh
Confidence 68999999999999999999999999999999966541 2 236699999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCCc
Q 016231 304 NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~ 322 (393)
||..|.|+.|.|.++.++.
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp TTCEETTEECEEEECSCSS
T ss_pred CCCeECCeEEEEEEcCCCC
Confidence 9999999999999997653
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.5e-16 Score=123.53 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=73.0
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+.+++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..|| .
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD--T---------------GRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS--S---------------CCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC--C---------------CceeeEEEEEECCHHHHHHHHHH
Confidence 478999999999999999999999999999999976542 2 236699999999999999999 5
Q ss_pred hcCceeCCeEEEEeecCCCc
Q 016231 303 FNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~~ 322 (393)
||+..|.|+.|.|.++.+..
T Consensus 67 l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HTTCCSSSSCCEEEESSCCC
T ss_pred hCCCeeCCcEEEEEEccccc
Confidence 99999999999999997653
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=126.11 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=73.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCee-EEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEID-SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~-sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
....++|||+|||+++++++|+.+|+.||.|. +|+|++++. + +.++|||||+|.+.++|+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A 68 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL--T---------------GIPAGYCFVEFADLATAEKC 68 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS--S---------------CCEEEEEEEECSCHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC--C---------------CCcCCEEEEEeCCHHHHHHH
Confidence 34579999999999999999999999999999 999977642 2 23669999999999999999
Q ss_pred H-HhcCceeCCeE----EEEeecCCC
Q 016231 301 L-AFNMAVIGGNH----IRLDRACPP 321 (393)
Q Consensus 301 l-~lng~~~~Gr~----I~V~~a~~~ 321 (393)
+ .||+..|.|+. |.|.++.+.
T Consensus 69 ~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 69 LHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHcCCccCCCCcceeEEEeecCCC
Confidence 9 59999999999 999999754
No 56
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=127.55 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=72.2
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++. + +.++|||||+|.+.++|..||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR--T---------------GYLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------SSEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC--C---------------CceeeEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999977542 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCC
Q 016231 302 AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~ 320 (393)
.||+..|.|+.|.|.++.+
T Consensus 84 ~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp HHTTCBSSSSBCEEEESEE
T ss_pred HhcCCEECCcEEEEEeecC
Confidence 5999999999999999864
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.7e-16 Score=125.86 Aligned_cols=86 Identities=24% Similarity=0.379 Sum_probs=74.6
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++. + +.++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A 73 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV--T---------------GQHQGYGFVEFLSEEDADYA 73 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS--S---------------CSBCSCEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CcCCcEEEEEECCHHHHHHH
Confidence 344579999999999999999999999999999999866541 2 23669999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCCcc
Q 016231 301 L-AFNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~~~ 323 (393)
| .||+..|.|+.|.|.++.+...
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 74 IKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp HHHSSSCBCSSCBCEEEETTTTSC
T ss_pred HHHhCCCeECCeEEEEEECCCCCc
Confidence 9 5999999999999999976543
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=2.2e-16 Score=129.04 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=72.6
Q ss_pred CcccEEEEeCCCc------cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHH
Q 016231 223 KLLRTIFVGNLPL------KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (393)
Q Consensus 223 ~~~rtVFVgNLp~------~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~ 296 (393)
...++|||+|||+ .+++++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~--t---------------g~~kG~afV~f~~~~~ 66 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA--T---------------GKTKGFLFVECGSMND 66 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT--T---------------TEECSEEEEEESSHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC--C---------------CccceEEEEEECCHHH
Confidence 4478999999999 999999999999999999999987652 2 2366999999999999
Q ss_pred HHHHH-HhcCceeCC-eEEEEeecCC
Q 016231 297 TEAAL-AFNMAVIGG-NHIRLDRACP 320 (393)
Q Consensus 297 A~~Al-~lng~~~~G-r~I~V~~a~~ 320 (393)
|..|| .|||..|.| +.|.|.++.+
T Consensus 67 A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 67 AKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHhCCcccCCCeEEEEEECch
Confidence 99999 699999999 9999999864
No 59
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.2e-16 Score=126.45 Aligned_cols=84 Identities=21% Similarity=0.344 Sum_probs=73.8
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD--T---------------EHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS--S---------------CCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CCCccEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999976542 2 235699999999999999999
Q ss_pred -Hhc------CceeCCeEEEEeecCCCc
Q 016231 302 -AFN------MAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~ln------g~~~~Gr~I~V~~a~~~~ 322 (393)
.|| +..|.|+.|.|.++.+..
T Consensus 75 ~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 75 AAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp HHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred HHhccccccCCcEEcCEEEEEEECCCCc
Confidence 699 999999999999997654
No 60
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=130.73 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=72.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I-~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
....++|||+|||+++|+++|+.+|+.||.| ..|+|++++ + +.++|||||+|.+.++|..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~---~---------------g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN---N---------------GQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT---T---------------SSCSSCEEEECSSHHHHHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC---C---------------CCcceEEEEEECCHHHHHHH
Confidence 3457999999999999999999999999999 889986654 2 23669999999999999999
Q ss_pred HHhcCceeCCeEEEEeecCCC
Q 016231 301 LAFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l~lng~~~~Gr~I~V~~a~~~ 321 (393)
|.+|+..|.|+.|.|.++.+.
T Consensus 74 l~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 74 ERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp GGGCSEEETTEEEEEEEECHH
T ss_pred HHhCCCccCCeEEEEEECCHH
Confidence 977999999999999998653
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=6.8e-16 Score=123.06 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=72.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++++++|+.+|+.||.|..|+|+++ ++ .++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~g---------------~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME----NG---------------KSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES----SS---------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc----CC---------------CcceEEEEEECCHHHHHHHHH
Confidence 45789999999999999999999999999999999652 22 35699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 67 MMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHTTCCBTTBCCCCEECSCCS
T ss_pred HhCCCEECCcEEEEEEcCCCC
Confidence 599999999999999997653
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=127.42 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=74.0
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT--T---------------NQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS--S---------------CCEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--C---------------CCcceEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999999977542 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
..|+..|.|+.|.|.++.+..
T Consensus 76 ~~~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 76 ASRPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp HHCSEEETTEEEBCCCSCCSS
T ss_pred HhCCCeECCEEEEEEEccCCC
Confidence 669999999999999997654
No 63
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=128.35 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=73.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE--T---------------GKPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT--T---------------TEEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC--C---------------CccceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999977642 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 69 ~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 69 NLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp HSSSBSCSSSCBEEEETTCTT
T ss_pred HhCCCeeCCcEEEEEeCCCcc
Confidence 699999999999999997643
No 64
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=125.90 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=73.4
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcc-cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~-~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
....++|||+|||+++|+++|+.+|+. ||.|.+|+|++++ ++ .++|||||+|.+.++|..|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~---~g---------------~~~g~afV~f~~~~~a~~A 67 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ---TG---------------VSKGYGFVKFTDELEQKRA 67 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT---TC---------------CEEEEEEEEESCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC---CC---------------CccceEEEEECCHHHHHHH
Confidence 345789999999999999999999999 9999999997754 22 3669999999999999999
Q ss_pred H-HhcCce-eCCeEEEEeecCCCc
Q 016231 301 L-AFNMAV-IGGNHIRLDRACPPR 322 (393)
Q Consensus 301 l-~lng~~-~~Gr~I~V~~a~~~~ 322 (393)
| .||+.. |.|+.|.|.++.+..
T Consensus 68 ~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 68 LTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp HHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred HHHccCCcccCCEeEEEEEccCCC
Confidence 9 599999 999999999997654
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=122.76 Aligned_cols=80 Identities=26% Similarity=0.367 Sum_probs=71.1
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|+.++. + +.++|||||+|.+.++|..|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~ 75 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD--T---------------RKSKGVAFILFLDKDSAQNCT 75 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS--S---------------CCCTTCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--C---------------CCcccEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999966542 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeec
Q 016231 302 -AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a 318 (393)
.||+..|.|+.|.|.++
T Consensus 76 ~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 76 RAINNKQLFGRVIKASIA 93 (94)
T ss_dssp HHTTTEEETTEEEEEEEC
T ss_pred HHcCCCeeCCcEEEEEec
Confidence 69999999999999987
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=125.36 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|..||.|..|+|+.++ ++ .++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~g---------------~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK---DG---------------KSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TC---------------SEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CC---------------CeeeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997754 12 36699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++...
T Consensus 74 ~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 74 SMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHHTTCEETTEECEEEECSCC
T ss_pred HHhCCCEeCCCEEEEEEcccC
Confidence 59999999999999998643
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6.8e-16 Score=127.38 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=72.1
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ . ++.++|||||+|.+.++|..||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~---------------~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR--R---------------TGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT--T---------------TSSBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC--C---------------CCCcceEEEEEECCHHHHHHHHH
Confidence 446899999999999999999999999999999986643 1 2346699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.|||..|.|+.|.|.++.+.
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHTTCEETTEECEEEESEES
T ss_pred HcCCCEECCcEEEEEEcccC
Confidence 59999999999999998643
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.1e-16 Score=123.56 Aligned_cols=82 Identities=28% Similarity=0.338 Sum_probs=72.5
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEE-EEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSV-RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sV-ri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
..++|||+|||+.+++++|+.+|+.||.|..| +|++++. + +.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD--T---------------GNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT--T---------------CSCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC--C---------------CCcCeEEEEEECCHHHHHHHHH
Confidence 47899999999999999999999999999999 8866531 2 2366999999999999999995
Q ss_pred -hcCceeCCeEEEEeecCCCc
Q 016231 303 -FNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 303 -lng~~~~Gr~I~V~~a~~~~ 322 (393)
||+..|.|+.|.|.++.+..
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp TTTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEEecccC
Confidence 99999999999999997654
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=121.31 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=71.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++++++|+.+|+.| .|..|+|+++. + +.++|||||+|.+.++|..||.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA---H---------------GNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT---T---------------SCEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC---C---------------CCCceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999 89999997652 2 2366999999999999999999
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
+|+..|.|+.|.|.++.+.
T Consensus 69 ~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 69 CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp SCSEEETTEEEEEEEESSC
T ss_pred hCCceeCCcEEEEEECCcC
Confidence 9999999999999998754
No 70
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-15 Score=122.85 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|+.++. + +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK--T---------------GHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS--S---------------CSEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CCccceEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999977542 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
. ++..|.|+.|.|.++.+..
T Consensus 75 ~-~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 75 S-QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp H-SCEEETTEEEEEECCCTTC
T ss_pred H-cCCeeCCeEEEEEecCCCC
Confidence 7 5789999999999997653
No 71
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=124.34 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.+ ++ .++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~g---------------~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME----GG---------------RSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC----SS---------------SEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CC---------------CcCEEEEEEECCHHHHHHHH
Confidence 345799999999999999999999999999999999664 22 35699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 73 TEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHTTCBSSSSBCEEEECSSCC
T ss_pred HHhCCCEeCCcEEEEEEecccc
Confidence 599999999999999997654
No 72
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.7e-16 Score=125.59 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=73.7
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++++++|+.+|+.||.|..|+|++++ .+ +.++|||||+|.+.++|..||
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~--~~---------------~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR--ET---------------QRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS--SS---------------CSCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CC---------------CCcccEEEEEECCHHHHHHHH
Confidence 3457999999999999999999999999999999996654 12 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 72 ~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 72 MAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHHTTCCTTSCCCEEEEEECCC
T ss_pred HHhCCCEECCeEEEEEECCCCC
Confidence 799999999999999997653
No 73
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=125.80 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=71.6
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|..|+|+.+. .++|||||+|.+.++|..||
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999984321 25699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 79 ~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 79 YGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp HHHTTCEETTEECEEECCCCCC
T ss_pred HHcCCCEECCeEEEEEEcccCC
Confidence 799999999999999997654
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=121.65 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=71.9
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++|+++|+.+|+.||.|.+|.|+.++.. + +.++|||||+|.+.++|..|+ .
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~--------------~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH--P--------------HLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE--E--------------EEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC--C--------------CCCCcEEEEEEecHHHHHHHHHH
Confidence 3689999999999999999999999999999999776521 1 125689999999999999999 5
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
|||..|.|+.|.|.++.++
T Consensus 67 l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HTTCEETTEECEEEEECCC
T ss_pred cCCCeECCeEEEEEECCCC
Confidence 9999999999999999754
No 75
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=1.1e-15 Score=125.29 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=71.1
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|.+|.|++++ + +.++|||||+|.+.++|..||
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR---S---------------GRSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---T---------------SCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 447899999999999999999999999999999997754 2 235699999999999999999
Q ss_pred HhcCceeCCeEEEEeecC
Q 016231 302 AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~ 319 (393)
.||+..|.|+.|.|.++.
T Consensus 89 ~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCcEEEEEEeC
Confidence 599999999999999874
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=123.10 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=70.9
Q ss_pred CcccEEEEeCCCccCCHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~----~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
...++|||+|||+++++++|+ .+|+.||.|.+|+|++++. .+|||||+|.+.++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~--------------------~rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD--------------------YQLKAVVQMENLQDAI 66 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS--------------------TTCCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC--------------------CCeEEEEEECCHHHHH
Confidence 346899999999999999999 9999999999999966541 1489999999999999
Q ss_pred HHH-HhcCceeCCeEEEEeecCCCc
Q 016231 299 AAL-AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 299 ~Al-~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.|| .||+..|.|+.|.|.++.+..
T Consensus 67 ~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 67 GAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp HHHHHHTTEEETTEEEEEEECCCSS
T ss_pred HHHHHhCCCEECCeEEEEEEcCCCC
Confidence 999 599999999999999997543
No 77
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=127.88 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+++|+.||.| .|+|++++ + ++++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~---~---------------g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP---D---------------GRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS---S---------------SCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC---C---------------CCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999954 89997754 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.+|+..|.||.|.|.++.+..
T Consensus 73 ~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 73 AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp TTSSCCSSSSCCEEEEECCCC
T ss_pred HhCCCeECCcEEEEEECCCCC
Confidence 999999999999999987543
No 78
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=6.5e-16 Score=130.16 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=71.8
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~---I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
...++|||+|||+++|+++|+.+|+.||. |..|+|+.++. ++++|||||+|.+.++|..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~------------------g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE------------------GRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS------------------SCEEEEEEEEBSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC------------------CCCCeEEEEEECCHHHHHH
Confidence 44789999999999999999999999999 88999977541 2367999999999999999
Q ss_pred HHHhcCceeCCeEEEEeecCC
Q 016231 300 ALAFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 300 Al~lng~~~~Gr~I~V~~a~~ 320 (393)
||.+|+..|.|+.|.|.++..
T Consensus 77 Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 77 ALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HGGGTTEEETTEEEEEEEECH
T ss_pred HHhcCCCeECCeEEEEEECCH
Confidence 999999999999999999854
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=3.1e-16 Score=120.52 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=67.3
Q ss_pred EEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhcCc
Q 016231 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (393)
Q Consensus 227 tVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~lng~ 306 (393)
+|||+|||+++++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|+.|+.+|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~a~~~~~~ 63 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT--T---------------NRHRGFGFVTFESEDIVEKVCEIHFH 63 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS--S---------------TTSCBEEEEECSCHHHHHHHHSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CCcCcEEEEEECCHHHHHHHHHCCCC
Confidence 499999999999999999999999999999866541 2 34669999999999999999999999
Q ss_pred eeCCeEEEEeec
Q 016231 307 VIGGNHIRLDRA 318 (393)
Q Consensus 307 ~~~Gr~I~V~~a 318 (393)
.|.|+.|.|.+|
T Consensus 64 ~~~g~~l~v~~A 75 (75)
T 2mss_A 64 EINNKMVECKKA 75 (75)
T ss_dssp CSSSCCCEEECC
T ss_pred EECCEEEEEEeC
Confidence 999999999875
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=124.82 Aligned_cols=84 Identities=23% Similarity=0.398 Sum_probs=73.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeee-cccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV-PIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~-~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+++ + .+ +.++|||||+|.+.++|..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~---------------~~~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT--GT---------------GAHRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCS--SS---------------CSSCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCC--CC---------------CCcCceEEEEECCHHHHHHH
Confidence 445799999999999999999999999999999998654 2 12 34669999999999999999
Q ss_pred H-Hh-cCceeCCeEEEEeecCCCc
Q 016231 301 L-AF-NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 301 l-~l-ng~~~~Gr~I~V~~a~~~~ 322 (393)
| .| |+..|.|+.|.|.++.+..
T Consensus 75 ~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 75 FNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHHhccCCeECCCEEEEEeCCCCC
Confidence 9 68 8999999999999997653
No 81
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.7e-16 Score=125.92 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=70.4
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeE-EEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~s-Vri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
...++|||+|||+++|+++|+++|+.||.|.. |+|+.+. + +.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~---~---------------g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF---Q---------------GRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS---S---------------SCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC---C---------------CCcceEEEEEECCHHHHHHHH
Confidence 45689999999999999999999999999987 7775431 2 346699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
..|+..|.||.|.|.++.+.
T Consensus 75 ~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 75 KKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp TTTTCCSSSSCCEEEEECTT
T ss_pred HhCcchhCCcEEEEEECCHH
Confidence 77999999999999998654
No 82
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=1.3e-15 Score=126.40 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=70.8
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|.+|+|++++ .+ +.++|||||+|.+.++|..||
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~t---------------g~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP--LT---------------KRSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT--TT---------------CCCTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC--CC---------------CCcCcEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999999999996654 12 346699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
..++..|.|+.|.|.++.+..
T Consensus 85 ~~~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 85 AQSRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp HSSCEEETTEEEEEEECCCCC
T ss_pred HHCCCcCCCEEEEEEEccCCC
Confidence 766799999999999997543
No 83
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=8.2e-16 Score=128.44 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=71.1
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++++++|+.+|+.||.|..|+|++++ .+ +.++|||||+|.+.++|..||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~~---------------g~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK--QT---------------SLSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS--SS---------------SCCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CC---------------CCcCcEEEEEECCHHHHHHHH
Confidence 4457999999999999999999999999999999996653 12 346699999999999999999
Q ss_pred -HhcCceeCCeEEEEeec
Q 016231 302 -AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a 318 (393)
.||+..|.|+.|.|.++
T Consensus 100 ~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 100 KAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHCCCCEETTEECCEEEC
T ss_pred HHcCCCEECCEEEEEEec
Confidence 69999999999999986
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1.2e-15 Score=128.49 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=72.4
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.++|||+|||+++|+++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||.||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF--S---------------GHPKGYAYIEFAERNSVDAAVAMD 98 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT--T---------------SSCEEEEEEEESSHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CCcccEEEEEECCHHHHHHHHhcC
Confidence 58999999999999999999999999999999987642 2 236699999999999999999999
Q ss_pred CceeCCeEEEEeecCCC
Q 016231 305 MAVIGGNHIRLDRACPP 321 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~ 321 (393)
+..|.|+.|.|.++.+.
T Consensus 99 g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 99 ETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TCEETTEECEEEESSCC
T ss_pred CCeECCeEEEEEECCCC
Confidence 99999999999998754
No 85
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8e-16 Score=128.12 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=68.7
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
+...++|||+|||+++|+++|+.+|+.||.|.+|+|+++ +|||||+|.+.++|..|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHH
Confidence 345799999999999999999999999999999998542 389999999999999999
Q ss_pred H-hc--CceeCCeEEEEeecCCCc
Q 016231 302 A-FN--MAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~-ln--g~~~~Gr~I~V~~a~~~~ 322 (393)
. ++ +..|.|+.|.|.++.+..
T Consensus 70 ~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 70 NYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHHTTSCCEETTEECCBCCCSSSS
T ss_pred HHhccCCceECCEEEEEEEcCCCC
Confidence 4 65 478999999999997643
No 86
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-16 Score=127.73 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=73.1
Q ss_pred cccEEEEeCCCccCCHHHHH---HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~---~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
..++|||+|||+.+++++|+ .+|+.||.|..|+|+++.. ++.. +.++|||||+|.+.++|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~--~~~~------------~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS--YAGS------------QGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS--CCSS------------SCCCEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC--cCcc------------CCCCeEEEEEECcHHHHHHH
Confidence 46899999999999999999 9999999999999966542 2211 23679999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCCc
Q 016231 301 L-AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~~ 322 (393)
| .||+..|.|+.|.|.++.+..
T Consensus 80 i~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 80 IQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHhCCCEECCEEEEEEeccccc
Confidence 9 589999999999999997653
No 87
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.4e-16 Score=123.80 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=71.6
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++++++|+.+|..||.|..+.++.++ .+ +.++|||||+|.+.++|+.||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~--~~---------------g~~~g~afV~f~~~~~a~~Ai~ 75 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--EK---------------GMPTGEAMVAFESRDEATAAVI 75 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC--SS---------------SCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC--CC---------------CCeeeEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999877776654 22 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++..+
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 76 DLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp HTTTCEETTEECEEEESSCS
T ss_pred HhCCCeeCCeEEEEEEcCCC
Confidence 79999999999999998654
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1.2e-15 Score=124.89 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=73.7
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|..|+|+.++. + +.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF--T---------------GMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS--S---------------CSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--C---------------CCcceEEEEEECCHHHHHHHH
Confidence 44579999999999999999999999999999999966542 2 236699999999999999999
Q ss_pred -HhcCcee---CCeEEEEeecCCCcc
Q 016231 302 -AFNMAVI---GGNHIRLDRACPPRK 323 (393)
Q Consensus 302 -~lng~~~---~Gr~I~V~~a~~~~~ 323 (393)
.||+..+ .|+.|.|.++.+...
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHhcCCcccCCCCceEEEEECCcccc
Confidence 6999987 899999999976543
No 89
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=125.35 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.+...++|||+|||+.+|+++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ--T---------------GKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS--S---------------CCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC--C---------------CccceEEEEEECCHHHHHHH
Confidence 345679999999999999999999999999999999966541 2 23669999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCC
Q 016231 301 L-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~ 321 (393)
| .+|+ .|.|+.|.|.++.+.
T Consensus 76 i~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 76 CKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HTCSSC-EETTEECEEEESTTT
T ss_pred HHhCCC-cCCCEEEEEEEcccC
Confidence 9 5777 899999999999754
No 90
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=126.06 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=73.6
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE--T---------------GRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT--T---------------TEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 44579999999999999999999999999999999987652 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.|||..|.|+.|.|.++.+.
T Consensus 86 ~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 86 EQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHTTCCSSSSCCEEECSCSS
T ss_pred HHcCCCEECCEEEEEEEcccC
Confidence 69999999999999998653
No 91
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=134.84 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=70.9
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G--~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..++|||+|||+++|+++|+.+|+.|| .|.+|+|++++. + +.++|||||+|.+.++|..||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~--t---------------g~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA--N---------------GQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT--T---------------CCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 468999999999999999999999999 999999987652 2 346699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCC
Q 016231 302 -AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~ 320 (393)
.|||..|.|+.|.|.++.+
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 6899999999999999864
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=6.9e-16 Score=123.72 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=69.6
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++|+++|+.+|..||.|..+.++.++ .+ +.++|||||+|.+.++|..|| .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~--~~---------------g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN--EK---------------GMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC--TT---------------SCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC--CC---------------CCEeeEEEEEECCHHHHHHHHHH
Confidence 35899999999999999999999999999888886654 22 236699999999999999999 5
Q ss_pred hcCceeCCeEEEEeecC
Q 016231 303 FNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~ 319 (393)
||+..|.|+.|.|.++.
T Consensus 77 l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HTTCEETTEECEEECCC
T ss_pred hCCCeECCcEEEEEecc
Confidence 99999999999999875
No 93
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=129.39 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=75.3
Q ss_pred cCCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
......++|||+|||+++++++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.++|..
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE--T---------------RQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT--T---------------TEEEEEEEEEESSHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC--C---------------CCcceEEEEEECCHHHHHH
Confidence 3445579999999999999999999999999999999987652 2 2356999999999999999
Q ss_pred HH-HhcCceeCCeEEEEeecCCCc
Q 016231 300 AL-AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 300 Al-~lng~~~~Gr~I~V~~a~~~~ 322 (393)
|| .||+..|.|+.|.|.++.+..
T Consensus 100 A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 100 AIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHHhCCCEECCeEEEEEECCCCC
Confidence 99 599999999999999997653
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=125.13 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=73.2
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCee--------EEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--------SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~--------sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
+....++|||+|||+.+|+++|+.+|+.||.|. .|+|+.++ .+ +.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~--~~---------------g~~~g~afV~f~ 73 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK--ET---------------GKPKGDATVSYE 73 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT--TT---------------CSBCSEEEEEBS
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC--CC---------------CCeeeEEEEEEC
Confidence 344579999999999999999999999999998 58886543 12 336699999999
Q ss_pred CHHHHHHHH-HhcCceeCCeEEEEeecCCCc
Q 016231 293 SEQSTEAAL-AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 293 s~e~A~~Al-~lng~~~~Gr~I~V~~a~~~~ 322 (393)
+.++|..|| .||+..|.|+.|.|.++.+..
T Consensus 74 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 74 DPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred CHHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 999999999 599999999999999997653
No 95
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=123.11 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=71.6
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeE--------EEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCC
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~s--------Vri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s 293 (393)
....++|||+|||+++++++|+.+|+.||.|.. |+|++++ .+ +.++|||||+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~--~~---------------g~~~G~afV~f~~ 72 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR--ET---------------GKLKGEATVSFDD 72 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT--TT---------------CSEEEEEEEEBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC--CC---------------CCeeeEEEEEECC
Confidence 445799999999999999999999999999999 9987754 22 2366999999999
Q ss_pred HHHHHHHH-HhcCceeCCeEEEEeecC
Q 016231 294 EQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 294 ~e~A~~Al-~lng~~~~Gr~I~V~~a~ 319 (393)
.++|..|+ .|||..|.|+.|.|.+|.
T Consensus 73 ~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 73 PPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 99999999 699999999999999873
No 96
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=126.79 Aligned_cols=82 Identities=20% Similarity=0.397 Sum_probs=72.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
..++|||+|||+++|+++|+.+|..||.|..|+|++++ .+ +.++|||||+|.+.++|..||..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~---------------g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP--AS---------------KRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT--TT---------------SSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CC---------------CCcCceEEEEeCCHHHHHHHHHh
Confidence 36899999999999999999999999999999997654 22 23669999999999999999977
Q ss_pred cCceeCCeEEEEeecCCCc
Q 016231 304 NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~ 322 (393)
|+..|.|+.|.|.++.+..
T Consensus 89 ~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 89 RPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp CSEEETTEEEEEECCSSCC
T ss_pred CCcEECCEEEEEEECCCCc
Confidence 9999999999999997654
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=126.41 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=67.0
Q ss_pred cccEEEEeCCCc-cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 224 LLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 224 ~~rtVFVgNLp~-~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
++++|||+|||+ .+|+++|+.+|+.||.|.+|+|++ .+|||||+|.+.++|..|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----------------------KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----------------------SSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 578999999999 999999999999999999999843 2379999999999999999
Q ss_pred HhcC--ceeCCeEEEEeecCCC
Q 016231 302 AFNM--AVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng--~~~~Gr~I~V~~a~~~ 321 (393)
.||+ ..|.|++|.|.++...
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHHSCCEETTEECEEEEECCC
T ss_pred HHcCCCceECCcEEEEEECCCC
Confidence 5775 4699999999999754
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.5e-16 Score=127.73 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=72.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..||.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN--S---------------RRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC--S---------------SSCCCCEEEEESCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC--C---------------CccCcEEEEEeCcHHHHHHHHH
Confidence 3468999999999999999999999999999999966541 2 2366999999999999999999
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
||+..|.|+.|.|.++.+.
T Consensus 86 l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 86 LTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp HTTEEETTEEEEEEEHHHH
T ss_pred cCCCEeCCeEEEEEecCCC
Confidence 9999999999999998643
No 99
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=119.08 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=69.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~ 60 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAI 60 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999999999983 269999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 61 AQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHHTTCEETTEECEEEESCCCC
T ss_pred HHhCCCEECCcEEEEEECCCCC
Confidence 599999999999999997653
No 100
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.2e-15 Score=119.48 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=68.9
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhccc--CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~--G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
....++|||+|||+.+|+++|+.+|+.| |.|..|.+ .+|||||+|.+.++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------------------------~~g~afV~f~~~~~A~~ 66 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------------------------IRDYAFVHFSNREDAVE 66 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------------------------CSSEEEEEESSHHHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------------------------eCCeEEEEeCCHHHHHH
Confidence 3457999999999999999999999999 89988876 23799999999999999
Q ss_pred HH-HhcCceeCCeEEEEeecCCCc
Q 016231 300 AL-AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 300 Al-~lng~~~~Gr~I~V~~a~~~~ 322 (393)
|| .||+..|.|+.|.|.++.+..
T Consensus 67 A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 67 AMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCC
Confidence 99 599999999999999997654
No 101
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=124.51 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=68.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
.++++|||+|||+.+|+++|+.+|++||.|.+|+|++ ++|||||+|.+.++|..|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----------------------KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4689999999999999999999999999999999843 3489999999999999999
Q ss_pred HhcCce--eCCeEEEEeecCCC
Q 016231 302 AFNMAV--IGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~--~~Gr~I~V~~a~~~ 321 (393)
.||+.. |.|+.|.|.++.+.
T Consensus 76 ~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 76 YAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHSCEEETTEEEEEEECSCS
T ss_pred HhcCCCceeCCcEEEEEecccc
Confidence 688764 78999999999753
No 102
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-15 Score=118.74 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=69.5
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4557999999999999999999999999999999983 269999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCC
T ss_pred HHhCCCeeCCcEEEEEEccCCC
Confidence 699999999999999997654
No 103
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=3.2e-16 Score=120.33 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=66.7
Q ss_pred EEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhcCc
Q 016231 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (393)
Q Consensus 227 tVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~lng~ 306 (393)
+|||+|||+++++++|+.+|+.||.|.+|.|++++. ++.++|||||+|.+.++|..|+.+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~Ai~~~~~ 63 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-----------------TNKRRGFCFITFKEEEPVKKIMEKKYH 63 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC-----------------CSSSCCCEEEECSSSHHHHHHHTTSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCcCCEEEEEECCHHHHHHHHHhCCC
Confidence 599999999999999999999999999999865431 234669999999999999999988999
Q ss_pred eeCCeEEEEeec
Q 016231 307 VIGGNHIRLDRA 318 (393)
Q Consensus 307 ~~~Gr~I~V~~a 318 (393)
.+.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~a 75 (75)
T 1iqt_A 64 NVGLSKCEIKVA 75 (75)
T ss_dssp CBTTBCCCEEEC
T ss_pred eECCEEEEEEEC
Confidence 999999999875
No 104
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.5e-15 Score=122.53 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=67.1
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
.+..||||||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|..|+ .
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 367899999999999999999999999999999832 4599999999999999999 7
Q ss_pred hcCceeCCeEEEEeecC
Q 016231 303 FNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~ 319 (393)
||+..+.|+.|+|..+.
T Consensus 63 Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 63 LNNCVLANTTIFAESPS 79 (89)
T ss_dssp HTTEEETTEEEEEECCC
T ss_pred hcCCEECCcEEEEEECC
Confidence 99999999999999873
No 105
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1.2e-15 Score=132.48 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=72.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~---I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
....++|||+|||+++|+++|+++|+.||. |..|+|++++. ++++|||||+|.+.++|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~------------------g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE------------------GRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS------------------SCEEEEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC------------------CCCCeEEEEEECCHHHHH
Confidence 345789999999999999999999999999 88999977641 236799999999999999
Q ss_pred HHHHhcCceeCCeEEEEeecCC
Q 016231 299 AALAFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 299 ~Al~lng~~~~Gr~I~V~~a~~ 320 (393)
.||.+|+..|.||.|.|.++.+
T Consensus 103 ~Al~~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 103 MALKKDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHHTTTEEESSSSEEEEEECCH
T ss_pred HHHhcCCCEECCEEEEEEECCh
Confidence 9999999999999999999853
No 106
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=122.43 Aligned_cols=77 Identities=18% Similarity=0.381 Sum_probs=68.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|. +++++. .++|||||+|.+.++|..|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHH
Confidence 4478999999999999999999999999996 666442 15689999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.++
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 75 CLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp HHTTCCSSSSCCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 79999999999999999754
No 107
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.6e-16 Score=119.38 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=66.4
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH-hc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~-ln 304 (393)
++|||+|||+++++++|+.+|+.||.|..|+|++++ .+ +.++|||||+|.+.++|..|+. ++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~---------------~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP--LT---------------KRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC--CS---------------SSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC--CC---------------CCcCceEEEEEcCHHHHHHHHHhCC
Confidence 479999999999999999999999999999997654 12 2366999999999999999995 66
Q ss_pred CceeCCeEEEEeec
Q 016231 305 MAVIGGNHIRLDRA 318 (393)
Q Consensus 305 g~~~~Gr~I~V~~a 318 (393)
..+.|+.|.|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 9999999999886
No 108
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=3.9e-15 Score=120.99 Aligned_cols=75 Identities=27% Similarity=0.488 Sum_probs=68.5
Q ss_pred CCcccEEEEeCCCc-cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~-~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
....++|||+|||+ ++++++|+.+|+.||.|..|+| ++|||||+|.+.++|..|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------------------------KNAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------------------------CSSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------------------------eCCEEEEEECCHHHHHHH
Confidence 34579999999999 9999999999999999999988 238999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCC
Q 016231 301 L-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~ 321 (393)
+ .||+..|.|+.|.|.++.+.
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 74 IEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp HHHHTTSEETTEECEEEECCCC
T ss_pred HHHcCCCEECCEEEEEEecCCC
Confidence 9 59999999999999998643
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=125.96 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=69.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.++ . ++++|||||+|.+.++|+.||.+|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~---~---------------g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH---V---------------GRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT---T---------------CCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC---C---------------CCCCeEEEEEECCHHHHHHHHhcC
Confidence 5789999999999999999999999 78999996653 1 236699999999999999999999
Q ss_pred CceeCCeEEEEeecCC
Q 016231 305 MAVIGGNHIRLDRACP 320 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~ 320 (393)
+..|.||.|.|..+.+
T Consensus 77 ~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 77 RMLMIQRYVEVSPATE 92 (109)
T ss_dssp TEEETTEEEEEEECCH
T ss_pred CCeECCeEEEEEECCc
Confidence 9999999999988854
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=119.04 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=69.9
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++++++|+.+|+.||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~ 59 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAI 59 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3457999999999999999999999999999999983 279999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCcc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~~ 323 (393)
.||+..|.|+.|.|.++.+...
T Consensus 60 ~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 60 RNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp HHHTTCBCSSCBCEEECSSCCCC
T ss_pred HHhcCCccCCcEEEEEECCCCCC
Confidence 7999999999999999976543
No 111
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=6.4e-16 Score=126.01 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=70.1
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++++++|+.+|+.|| |.+|+|++++. . ++.++|||||+|.+.++|..||.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~-~---------------~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS-N---------------PERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT-T---------------TCCCCSCEEEEECCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC-c---------------CCccCeEEEEEECCHHHHHHHHh
Confidence 3479999999999999999999999999 99999865431 1 23467999999999999999999
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
||+..|.|+.|.|.++.+.
T Consensus 80 l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 80 LNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp TTTCCBTTBCCCCEECCCS
T ss_pred cCCCEECCeEEEEEeccCC
Confidence 9999999999999998653
No 112
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=117.80 Aligned_cols=74 Identities=26% Similarity=0.484 Sum_probs=67.5
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
+...++|||+|||+.+++++|+.+|+.||.|..|++++ ++|||||+|.+.++|..|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~ 65 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAA 65 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999853 2489999999999999999
Q ss_pred H-h-cCceeCCeEEEEeec
Q 016231 302 A-F-NMAVIGGNHIRLDRA 318 (393)
Q Consensus 302 ~-l-ng~~~~Gr~I~V~~a 318 (393)
. | |+..|.|+.|.|.++
T Consensus 66 ~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 66 EKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HTTTTTCEETTEECCEEEC
T ss_pred HHhcCCeeECCCEEEEEec
Confidence 5 8 999999999999987
No 113
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=122.54 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=67.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
.++++|||+|||+.+|+++|+.+|+.||.|..|+|++ .+|||||+|.+.++|..|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----------------------GKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999998843 2389999999999999999
Q ss_pred Hh--cCceeCCeEEEEeecCCCc
Q 016231 302 AF--NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~l--ng~~~~Gr~I~V~~a~~~~ 322 (393)
.| ++..|.|+.|.|.++.+..
T Consensus 70 ~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 70 YYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHSCCEETTEECEEEECSCSS
T ss_pred HhccCCceECCcEEEEEEcCccc
Confidence 45 5678999999999997643
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=123.69 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=68.0
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..++++|||+|||+.+++++|+.+|+.||.|..|+|++ .+|||||+|.+.++|..|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai 68 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----------------------FKRQALVEFENIDSAKECV 68 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999999999998843 2389999999999999999
Q ss_pred -HhcCc--eeCCeEEEEeecCCCc
Q 016231 302 -AFNMA--VIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~--~~~Gr~I~V~~a~~~~ 322 (393)
.|++. .|.|+.|.|.++.+..
T Consensus 69 ~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 69 TFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHHSCCBSSSSBCEEEECSSSS
T ss_pred HHhccCCceECCEEEEEEEccCcc
Confidence 57654 5999999999997654
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.8e-16 Score=121.09 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=69.8
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++++++|+.+|+.||.|..|+|+.++. + +.++|||||+|.+.++|..|+ .
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT--T---------------NKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS--S---------------CSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CCcCcEEEEEECCHHHHHHHHHH
Confidence 478999999999999999999999999999999976542 2 236699999999999999999 5
Q ss_pred hcCceeCCeEEEEeecC
Q 016231 303 FNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~ 319 (393)
||+..|.|+.|+|.++.
T Consensus 67 l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 67 LKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHTCCEESCCSSCCC
T ss_pred hcCCeEeeEEEeecCCC
Confidence 99999999999887754
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=126.90 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=68.7
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..++++|||+|||+++|+++|+.+|+.||.|.+|+|+++ +|||||+|.+.++|..|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai 84 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMV 84 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999999998542 389999999999999999
Q ss_pred -Hhc--CceeCCeEEEEeecCCCc
Q 016231 302 -AFN--MAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~ln--g~~~~Gr~I~V~~a~~~~ 322 (393)
.++ +..|.|+.|.|.++.+..
T Consensus 85 ~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 85 NYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHHHCCCBTTBCCEEEECSSSS
T ss_pred HHhccCCceECCeEEEEEEccCCC
Confidence 576 468999999999997654
No 117
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.9e-15 Score=127.69 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=72.7
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. + +.++|||||+|.+.++|..||
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR--T---------------GYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT--T---------------SSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 34478999999999999999999999999999999966541 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 82 ~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 82 EGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHHTTCBSSSSBCEEEESEES
T ss_pred HHhCCCeeCCeEEEEEEecCC
Confidence 69999999999999998643
No 118
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=6.3e-16 Score=127.70 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=71.6
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~---I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
....++|||+|||+++|+++|+.+|+.||. |..|+|++++ . +.++|||||+|.+.++|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~--~----------------g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR--D----------------GKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT--T----------------STTCSEEEEEBSSHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC--C----------------CCEeeEEEEEECCHHHHH
Confidence 345789999999999999999999999998 8899986643 1 236799999999999999
Q ss_pred HHHHhcCceeCCeEEEEeecCC
Q 016231 299 AALAFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 299 ~Al~lng~~~~Gr~I~V~~a~~ 320 (393)
.||.+|+..|.|+.|.|.++.+
T Consensus 70 ~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 70 KALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHHTTTTCCSSSSCCCCEECCH
T ss_pred HHHHhCcceeCCeEEEEEECCH
Confidence 9999999999999999999864
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=120.47 Aligned_cols=80 Identities=26% Similarity=0.312 Sum_probs=68.2
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.| +++.+ . .+.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~---~---------------~g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN---Q---------------NGKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC---S---------------SSCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC---C---------------CCCEeeEEEEEECCHHHHHHHH
Confidence 4457999999999999999999999999976 44332 1 2346699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.++.
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 71 NSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp HHTSSEEETTEEEEEEECSSCC
T ss_pred HHhCCCEeCCeEEEEEEcCCCC
Confidence 599999999999999997654
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.7e-15 Score=127.19 Aligned_cols=79 Identities=20% Similarity=0.118 Sum_probs=69.0
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G-~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
....++|||+|||+++++++|+++|+.|| .|..|.|+.. .++|||||+|.+.++|+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------------------~~rGfaFV~F~~~e~A~~A 83 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------------------DFDGTGALEFPSEEILVEA 83 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------------------SSSCCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------------------CCCCEEEEEECCHHHHHHH
Confidence 34468999999999999999999999999 8998887321 1559999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCC
Q 016231 301 L-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~ 321 (393)
| .|||..|.|+.|.|.++..+
T Consensus 84 i~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 84 LERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHHTTTEEETTEEEEEEESCC-
T ss_pred HHHcCCCEECCeEEEEEECCCC
Confidence 9 69999999999999998643
No 121
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=1.2e-15 Score=132.97 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=83.3
Q ss_pred CCceEEEEeeCCHHHHHHHH-Hh-cCceeCCeEEEEeecCCCcccC-------CCCCCCCcCCcceeeeCCCCCCCCHHH
Q 016231 282 ADSVHAYIVFKSEQSTEAAL-AF-NMAVIGGNHIRLDRACPPRKKL-------KGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (393)
Q Consensus 282 ~srG~AFVeF~s~e~A~~Al-~l-ng~~~~Gr~I~V~~a~~~~~~~-------~~~~~~~~~~~~tLfVgNLp~~~teed 352 (393)
..+|+++|+|.+.+.|+.|+ .+ |+..+.| .|.+.++....... .........+.++|||+|||+.+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 46699999999999999999 78 9999999 99999886421110 011122345678999999999999999
Q ss_pred HHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 353 L~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+++|+.| |.|..|+|+++ ++|||||+|.+.
T Consensus 90 l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~ 120 (150)
T 2i2y_A 90 LERAFGYY----GPLRSVWVARN-----PPGFAFVEFEDP 120 (150)
T ss_dssp HHHHHHHH----SCEEEEEECSS-----SCSEEEEEESSH
T ss_pred HHHHHHhh----CCEEEEEEeeC-----CCcEEEEEECCH
Confidence 99999999 99999999887 589999999864
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.1e-15 Score=122.54 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=68.0
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++++++|+.+|+.||.|.+|+|+. ++|||||+|.+.++|..|+ .
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999841 4589999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCC
Q 016231 303 FNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~ 320 (393)
||+..|.|+.|.|.++.+
T Consensus 83 l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HTTCEETTEECCCCBCCC
T ss_pred hCCCeECCeEEEEEeccC
Confidence 999999999999999864
No 123
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.5e-15 Score=123.17 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=70.7
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|..|+|++++ + +.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~---------------g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS---S---------------GTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS---S---------------SCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999997754 2 236699999999999999999
Q ss_pred HhcCcee--------CCeEEEEeecCCC
Q 016231 302 AFNMAVI--------GGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~--------~Gr~I~V~~a~~~ 321 (393)
.||+..| .+++|.|.++.++
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred HhCCCEEcCCccccCCCCceeEEccCCC
Confidence 5999999 5788999988643
No 124
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=3.6e-15 Score=130.60 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=73.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|..|+|++++ .+ +.++|||||+|.+.++|..||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~--~~---------------g~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR--YT---------------KESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS--SC---------------TTSCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CC---------------CccceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999996654 12 346699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HSTTEESSSSEEEEEEECCS
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 69999999999999999764
No 125
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=123.19 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCcccEEEEeCCCccC------CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHH
Q 016231 222 GKLLRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~------tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e 295 (393)
....++|||+|||+.+ |+++|+.+|+.||.|.+|+|++ .++ .++|||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~----~~g---------------~~~G~afV~f~~~~ 72 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----EDG---------------KTKGYIFLEYASPA 72 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC----BTT---------------BSCCEEEEEECSSS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC----CCC---------------CeeeEEEEEECCHH
Confidence 3447899999999999 8899999999999999998852 222 36699999999999
Q ss_pred HHHHHH-HhcCceeCCe-EEEEeecCCC
Q 016231 296 STEAAL-AFNMAVIGGN-HIRLDRACPP 321 (393)
Q Consensus 296 ~A~~Al-~lng~~~~Gr-~I~V~~a~~~ 321 (393)
+|..|| .|||..|.|+ .|.|.++...
T Consensus 73 ~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 73 HAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 999999 5999999998 9999998643
No 126
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5e-15 Score=122.22 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=70.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|..|+|+++ +|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~~ 79 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAIV 79 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 34789999999999999999999999999999998542 389999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 80 ~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 80 SVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HHTTCEETTEECEEECCCCCC
T ss_pred HcCCCEECCcEEEEEecCCCC
Confidence 799999999999999997653
No 127
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=123.53 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=71.7
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|..|+|+++. + .++|||||+|.+.++|..|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~----~---------------~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE----R---------------GSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT----T---------------BCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC----C---------------CCceEEEEEECCHHHHHHHH
Confidence 3457999999999999999999999999999999996543 1 15589999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHTTCEETTEECEEEECCCS
T ss_pred HHcCCCEECCEEEEEEECCCC
Confidence 59999999999999998653
No 128
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=4.9e-15 Score=125.07 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|+|++++ + +.++|||||+|.+.++|..|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~---------------g~~~g~afV~f~~~~~A~~Ai 93 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---S---------------GRSLGTADVHFERRADALKAM 93 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS---S---------------SSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC---C---------------CCEeeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999996654 2 235699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 94 ~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 94 KQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHHTTEESSSCEEEEEEECCT
T ss_pred HHcCCCEECCcEEEEEEeCCC
Confidence 59999999999999999754
No 129
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=2.6e-15 Score=128.64 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=73.7
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
...+.++|||+|||+++++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~~G~afV~F~~~~~A~~A 104 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ--S---------------RRSRGFAFVYFENVDDAKEA 104 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS--S---------------SCCCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHH
Confidence 344578999999999999999999999999999999976542 2 23569999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCC
Q 016231 301 L-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~ 321 (393)
| .||+..|.|+.|.|.++.+.
T Consensus 105 i~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 105 KERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHHHTTCCSSSSCCEESCCSSS
T ss_pred HHHhCCCEECCEEEEEEEecCC
Confidence 9 59999999999999998754
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=129.38 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=69.8
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++|+++|+.+|+.||.|..+.++.+. .+ +.++|||||+|.+.++|..||.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~--~~---------------g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG--PN---------------GKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC--TT---------------SSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC--CC---------------CCCCeEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999875554432 12 3466999999999999999999
Q ss_pred hcCceeCCeEEEEeecCC
Q 016231 303 FNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~ 320 (393)
+|+..|.|+.|.|.++.+
T Consensus 86 ~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SCSBCSTTSCBEEEEECH
T ss_pred hCCCeECCcEEEEEECCH
Confidence 999999999999999864
No 131
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.1e-15 Score=120.55 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=69.9
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+|+++|+.+|+.||.|..|+|++ ++|||||+|.+.++|..|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------~kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----------------------DKGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----------------------TTTEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999842 3489999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 69 ~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 69 VELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHHTTCCBTTBCCEEEESSCC
T ss_pred HHhCCCEeCCceEEEEEcCCC
Confidence 79999999999999999764
No 132
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=7.8e-15 Score=128.60 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=73.2
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. + +.++|||||+|.+.++|..||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM--K---------------KTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHHH
Confidence 3579999999999999999999999999999999977652 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 100 ~l~g~~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAGF 119 (156)
T ss_dssp HTTTSEETTEECEEEEESCC
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 59999999999999999764
No 133
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.3e-15 Score=119.95 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=68.8
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
.+.++|||+|||+++|+++|+.+|+.||.|.+|+|++ .+|||||+|.+.++|+.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999998843 2379999999999999999
Q ss_pred HhcCceeC--CeEEEEeecCCC
Q 016231 302 AFNMAVIG--GNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~--Gr~I~V~~a~~~ 321 (393)
.||+..|. |+.|.|.++.+.
T Consensus 72 ~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 72 KMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHTTCBCSSSSCBCEEEECCCC
T ss_pred HHCCCEeCCCCcEEEEEECCCC
Confidence 59999999 999999999754
No 134
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=8.7e-15 Score=119.57 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=69.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|..|+|+ +|||||+|.+.++|..||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 63 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAME 63 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHH
Confidence 346899999999999999999999999999999883 269999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCcc
Q 016231 302 AFNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~~ 323 (393)
.||+..|.|+.|.|.++.+...
T Consensus 64 ~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 64 EMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HHTTEEETTEEEEEEECCCCCC
T ss_pred HHCCCccCCCEEEEEEcCCCcc
Confidence 5999999999999999976543
No 135
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=127.57 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=69.3
Q ss_pred CCcccEEEEeCCCccCCHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~----~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
..+.++|||+|||+.+++++|+ .+|+.||.|.+|.++. + +.++|||||+|.+.++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-----~---------------~~~rG~aFV~F~~~~~A 85 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-----S---------------DDNSGKAYIVFATQESA 85 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-----C---------------CSSCCCEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-----C---------------CCcCCEEEEEECCHHHH
Confidence 3457899999999999999876 6999999999988732 1 23569999999999999
Q ss_pred HHHH-HhcCceeCCeEEEEeecCCC
Q 016231 298 EAAL-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 298 ~~Al-~lng~~~~Gr~I~V~~a~~~ 321 (393)
..|+ .|||..|.|+.|.|.++...
T Consensus 86 ~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 86 QAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHHHCCCEeCCCEEEEEEccCc
Confidence 9999 79999999999999999754
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=8.6e-16 Score=124.85 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=69.7
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++|+++|+.+|+.||.|.. .++.+. .++.++|||||+|.+.++|..||.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-----------------RTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-----------------EEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHh
Confidence 35789999999999999999999999999876 443332 123467999999999999999999
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
||+..|.|+.|.|.++.+.
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 77 LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp GGGCCBTTBCCEEECCSCC
T ss_pred cCCcEECCcEEEEEEcCCC
Confidence 9999999999999999754
No 137
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=7.2e-15 Score=130.42 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=72.2
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----------------TGFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-----------------CCcEeeEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999977542 2346699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHTTCEETTEECEEEESEEC
T ss_pred HhCCCEECCEEEEEEEecCC
Confidence 69999999999999998643
No 138
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=125.67 Aligned_cols=81 Identities=28% Similarity=0.432 Sum_probs=70.8
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.....++|||+|||+.+++++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~~a~~A 121 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE--T---------------EKHRGFAFVEFELAEDAAAA 121 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT--T---------------CCCCSEEEEEESCHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC--C---------------CCcCcEEEEEECCHHHHHHH
Confidence 345679999999999999999999999999999999866541 2 23669999999999999999
Q ss_pred H-HhcCceeCCeEEEEeec
Q 016231 301 L-AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a 318 (393)
| .||+..|.|+.|.|.+|
T Consensus 122 ~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 122 IDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHSTEEEETTEEEEEEC-
T ss_pred HHHhCCCEECCEEEEEEeC
Confidence 9 69999999999999875
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.1e-15 Score=121.88 Aligned_cols=75 Identities=27% Similarity=0.470 Sum_probs=68.0
Q ss_pred CcccEEEEeCCCc-cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~-~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.+.++|||+|||+ .+++++|+.+|+.||.|.+|+|. +|||||+|.+.++|..|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 4578999999999 99999999999999999999982 279999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCC
T ss_pred HHcCCCeeCCcEEEEEEcCcCC
Confidence 599999999999999986543
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=129.15 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeE--EEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~s--Vri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
....++|||+|||+++|+++|+.+|+.||.|.. |+|++++. + +.++|||||+|.+. +|..
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~--t---------------g~~rG~aFV~f~~~-~a~~ 81 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ--T---------------QLNRGFAFIQLSTI-EAAQ 81 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS--S---------------SSBCSCEEEECCHH-HHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC--C---------------CCcceEEEEEECCH-HHHH
Confidence 355789999999999999999999999999977 89877542 2 34669999999999 9999
Q ss_pred HH-HhcCc----eeCCeEEEEeecCCCcc
Q 016231 300 AL-AFNMA----VIGGNHIRLDRACPPRK 323 (393)
Q Consensus 300 Al-~lng~----~~~Gr~I~V~~a~~~~~ 323 (393)
|| .||+. .|.|+.|.|.++.+...
T Consensus 82 Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 82 LLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp HHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred HHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 99 79999 99999999999976543
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=3.4e-15 Score=120.14 Aligned_cols=79 Identities=25% Similarity=0.333 Sum_probs=70.0
Q ss_pred CcccEEEEeCCCccCCHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~----~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
.+.++|||+|||+++++++|+ .+|+.||.|..|.|++. +.++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~--------------------~~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS--------------------LKMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH--------------------HHHTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC--------------------CCcCcEEEEEeCCHHHHH
Confidence 457899999999999999999 99999999999988421 125689999999999999
Q ss_pred HHH-HhcCceeCCeEEEEeecCCC
Q 016231 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 299 ~Al-~lng~~~~Gr~I~V~~a~~~ 321 (393)
.|+ .|||..|.|+.|.|.++.+.
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHhCCCEECCcEEEEEEccCC
Confidence 999 69999999999999999754
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=2.2e-15 Score=122.67 Aligned_cols=80 Identities=16% Similarity=0.357 Sum_probs=71.3
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++++++|+.+|+.||.|..|+|++++ ++ .++|||||+|.+.++|..|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g---------------~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR---TG---------------VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TS---------------CEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---CC---------------CccceEEEEECCHHHHHHHHh
Confidence 346899999999999999999999999999999997754 22 366999999999999999999
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
++..|.|+.|.|.++.+.
T Consensus 69 -~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 69 -SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp -CCCEETTEECEEEEEEEC
T ss_pred -CCCeECCEEEEEEECCcC
Confidence 999999999999998643
No 143
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=118.04 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=63.3
Q ss_pred ccEEEEeCCCccC------CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 225 LRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 225 ~rtVFVgNLp~~~------tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
+++|||+|||+.+ |+++|+.+|+.||.|.+|+|++ .++ .++|||||+|.+.++|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~----~~g---------------~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----EDG---------------KTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC----BTT---------------BCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC----CCC---------------cEeEEEEEEECCHHHHH
Confidence 3789999999999 7899999999999999998842 222 36699999999999999
Q ss_pred HHH-HhcCceeCCe-EEEE
Q 016231 299 AAL-AFNMAVIGGN-HIRL 315 (393)
Q Consensus 299 ~Al-~lng~~~~Gr-~I~V 315 (393)
.|+ .|||..|.|+ .|.|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 999 6999999999 8876
No 144
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.5e-15 Score=120.11 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=70.3
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCC-eeEEEEe-eecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIR-SVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~-I~sVri~-~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..++|||+|||+++|+++|+.+|..||. |..|.|+ .+. . ++.++|||||+|.+.++|..|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~--~---------------~g~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA--D---------------KMKNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC--T---------------TTTTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC--C---------------CCCcCcEEEEEecCHHHHHHHH
Confidence 4689999999999999999999999998 9999885 322 1 2246799999999999999999
Q ss_pred -Hhc--CceeCCeEEEEeecCCCc
Q 016231 302 -AFN--MAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~ln--g~~~~Gr~I~V~~a~~~~ 322 (393)
.|| +..|.|+.|.|.++.+..
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHhhCCCceecCCeEEEEEcCCCC
Confidence 585 589999999999997643
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.7e-15 Score=125.47 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCcccEEEEeCCCcc-CCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~-~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
..++++|||+|||++ +|+++|+.+|+.||.|.+|+|++ ++|||||+|.+.++|..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~A 78 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAM 78 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHH
Confidence 445799999999998 99999999999999999999842 348999999999999999
Q ss_pred H-Hhc--CceeCCeEEEEeecCCC
Q 016231 301 L-AFN--MAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l-~ln--g~~~~Gr~I~V~~a~~~ 321 (393)
+ .|| +..|.|+.|.|.++...
T Consensus 79 i~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 79 VDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHHHHSCCCSSSSCCEEEEECSC
T ss_pred HHHhccCCceECCEEEEEEECccc
Confidence 9 565 45699999999999754
No 146
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.9e-15 Score=124.80 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=67.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
+..++|||+|||+.+|+++|+.+|+.||.|..|+|+. ++|||||+|.+.++|..||
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHH
Confidence 3468999999999999999999999999999988732 3489999999999999999
Q ss_pred HhcCceeCCeEEEEeecCC
Q 016231 302 AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~ 320 (393)
.||+..|.|+.|.|.++..
T Consensus 65 ~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 65 HLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HHTTCBSSSSBCEEEEEET
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 6999999999999999853
No 147
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=1.1e-15 Score=121.47 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=67.7
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
++|||+|||+++++++|+.+|+.||.|.+|+|++++. + +.++|||||+|.+.+ |..|+ .||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~---------------~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE--T---------------KKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS--S---------------CCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC--C---------------CCcceEEEEEECCHH-HHHHHHHhC
Confidence 6899999999999999999999999999999966541 2 236699999999999 99999 699
Q ss_pred CceeCCeEEEEeecCCC
Q 016231 305 MAVIGGNHIRLDRACPP 321 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~ 321 (393)
+..|.|+.|.|.++.+.
T Consensus 64 g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSCCSSSSCSEEEC---
T ss_pred CCEECCeEEEEEEcCCC
Confidence 99999999999999754
No 148
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=120.19 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=69.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|..|.|+.+ |||||+|.+.++|+.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------------------------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------------------------TEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------------------------CEEEEEECCHHHHHHHHH
Confidence 45789999999999999999999999999999998431 69999999999999999
Q ss_pred HhcCceeCC-----eEEEEeecCCCc
Q 016231 302 AFNMAVIGG-----NHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~G-----r~I~V~~a~~~~ 322 (393)
.||+..|.| +.|.|.++.+..
T Consensus 69 ~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 69 KLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp HSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HHCcCCccCCcCcceEEEEEeCCCCC
Confidence 599999999 999999997643
No 149
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=127.75 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=68.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCe----eEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I----~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.++|||+|||+++|+++|++||+.||.| ..|+|+.+. ++ +++|||||+|.+.++|..|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~---~g---------------r~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP---DG---------------RPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT---TS---------------CEEEEEEECCSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC---CC---------------CEeeEEEEEECCHHHHHHH
Confidence 6899999999999999999999999975 688887652 22 3669999999999999999
Q ss_pred HHhcCceeCCeEEEEeecCC
Q 016231 301 LAFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 301 l~lng~~~~Gr~I~V~~a~~ 320 (393)
|..|+..|.||.|.|..+.+
T Consensus 85 l~~~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 85 LRKHKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HTTTTEESSSCEECCEEECH
T ss_pred HHhCCCeeCCeEEEEEECCH
Confidence 97799999999999988753
No 150
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.1e-14 Score=120.38 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=68.1
Q ss_pred cccEEEEeCCCcc-CCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~-~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
..++|||+|||+. +++++|+.+|+.||.|..|.| ++|||||+|.+.++|..||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------------------------HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------------------------ETTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------------------------eCCEEEEEECCHHHHHHHHH
Confidence 4689999999999 999999999999999999988 2379999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.++.
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 799999999999999997543
No 151
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=8.6e-15 Score=115.24 Aligned_cols=72 Identities=26% Similarity=0.546 Sum_probs=65.8
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhccc----C-------CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEee
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVF 291 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~----G-------~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF 291 (393)
+..++|||+|||+++++++|+.+|+.| | .|.+|++++ ++|||||+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----------------------~kg~afV~f 60 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEF 60 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----------------------SSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----------------------CCcEEEEEc
Confidence 457999999999999999999999999 8 899988832 348999999
Q ss_pred CCHHHHHHHHHhcCceeCCeEEEEee
Q 016231 292 KSEQSTEAALAFNMAVIGGNHIRLDR 317 (393)
Q Consensus 292 ~s~e~A~~Al~lng~~~~Gr~I~V~~ 317 (393)
.+.++|..|+.||+..|.|+.|.|.+
T Consensus 61 ~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 61 RSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 99999999999999999999999975
No 152
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=1.1e-14 Score=120.78 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=69.5
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4457999999999999999999999999999999984 279999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.|||..|.|+.|.|.++.+..
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 83 EEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp HHHTTCEETTEECEEESCSCCC
T ss_pred HHcCCCEECCeEEEEEEecCCC
Confidence 699999999999999997643
No 153
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=9.4e-15 Score=117.45 Aligned_cols=78 Identities=29% Similarity=0.305 Sum_probs=67.3
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..+ . .+ +.++|||||+|.+.++|..|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~----~~---------------~~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---S----QD---------------GKSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---E----ET---------------TEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---C----CC---------------CCcceEEEEEECCHHHHHHHH
Confidence 3457999999999999999999999999987655 1 11 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 71 EEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HHTTEEEETTEEEEEEECSSS
T ss_pred HHhCCCEECCeEEEEEEcCCC
Confidence 59999999999999999754
No 154
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=121.11 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=68.7
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|..|.+..... + +.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~---------------g~~~g~afV~f~~~~~a~~Ai~ 85 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--T---------------GRMRGQAFITFPNKEIAWQALH 85 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--C---------------SSSCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--C---------------CccceEEEEEECCHHHHHHHHH
Confidence 4579999999999999999999999999984332222111 1 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 86 ~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 86 LVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HSTTCBCSSCBCEEEECCCCS
T ss_pred HhCCCEeCCcEEEEEEccCCC
Confidence 699999999999999997654
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8e-15 Score=117.34 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=66.8
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~-I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
...++|||+|||+++|+++|+.+|+.||. |..+.++ ++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~ 61 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAI 61 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHH
Confidence 34689999999999999999999999999 6655551 3489999999999999999
Q ss_pred -HhcC-ceeCCeEEEEeecCCCc
Q 016231 302 -AFNM-AVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 -~lng-~~~~Gr~I~V~~a~~~~ 322 (393)
.||+ ..|.|+.|.|.++.+..
T Consensus 62 ~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 62 ETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHTTTCEETTEECEEEECCCCC
T ss_pred HHccCCeeECCEEEEEEEccCcc
Confidence 6999 99999999999997653
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=7.4e-15 Score=127.95 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=70.9
Q ss_pred CCCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.....++|||+|||+.+|+++|+.+|+.||.|.+|+|+++ ++|||||+|.+.++|..|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A 126 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADA 126 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHH
Confidence 3445799999999999999999999999999999999542 248999999999999999
Q ss_pred H-HhcCceeCCeEEEEeecCCC
Q 016231 301 L-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 301 l-~lng~~~~Gr~I~V~~a~~~ 321 (393)
| .||+..|.|+.|.|.++.++
T Consensus 127 ~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 127 VRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHcCCCEECCeEEEEEEcCCC
Confidence 9 59999999999999999754
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=116.66 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=68.6
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEE-EeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVr-i~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
..++|||+|||+++++++|+.+|+.||.|.+|+ |+.++ ..|.|||+|.+.++|..|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---------------------~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---------------------ETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---------------------SSEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---------------------CCCEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999995 64433 2367999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 69999999999999999765
No 158
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.2e-14 Score=115.53 Aligned_cols=82 Identities=28% Similarity=0.360 Sum_probs=68.8
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+++|+++|+.+|+.|+ .|+++.++ .+ +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~--~~---------------~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR--ET---------------GSSKGFGFVDFNSEEDAKAAK 71 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS--SS---------------CSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC--CC---------------CCcCcEEEEEECCHHHHHHHH
Confidence 34579999999999999999999999885 46665543 12 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCCcc
Q 016231 302 -AFNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~~~ 323 (393)
.||+..|.|+.|.|.++.+...
T Consensus 72 ~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 72 EAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHHTTCEETTEECEEEECCCCCS
T ss_pred HHhCCCeECCeEEEEEEecCCCC
Confidence 5999999999999999976543
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=6e-15 Score=126.60 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=68.3
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCee--EEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~--sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
...++|||+|||+++|+++|+++|+.| .|. +|+|++++ + +.++|||||+|.+.++|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~--~----------------GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP--E----------------GKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS--S----------------SSSCSEEEEEESSTTHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC--C----------------CCCceEEEEEECCHHHHHHH
Confidence 346889999999999999999999999 566 88886654 1 23669999999999999999
Q ss_pred HHhcCceeCCeEEEEeecCC
Q 016231 301 LAFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 301 l~lng~~~~Gr~I~V~~a~~ 320 (393)
|.+++..|.||.|.|..+.+
T Consensus 101 l~~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 101 LGKHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HTTTTCCBTTBCCCCEEECH
T ss_pred HHHCCCEECCEEEEEEECCH
Confidence 98888999999999988753
No 160
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.54 E-value=8.8e-15 Score=126.24 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=72.9
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|..|+|+.++. + +.++|||||+|.+.++|+.||
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~---------------g~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY--T---------------KESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS--S---------------SSCCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHHH
Confidence 4468999999999999999999999999999999866431 2 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 108 ~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 108 AMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp TTTTCCSSSSCCEEEECCCCC
T ss_pred HcCCCEECCEEEEEEECCCCC
Confidence 699999999999999997543
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=114.08 Aligned_cols=77 Identities=26% Similarity=0.387 Sum_probs=66.1
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
..++|||+|||+++|+++|+.+|+.||.|.+|. .++ .+ .+ ||||+|.+.++|..||.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~--~~~--~~-----------------g~-~afV~f~~~~~a~~ai~l 64 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVV--MDK--DK-----------------GV-FAIVEMGDVGAREAVLSQ 64 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEE--ECS--SS-----------------CC-EEEEEESSHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--EcC--CC-----------------Cc-EEEEEECCHHHHHHHHhc
Confidence 468999999999999999999999999999872 222 00 11 999999999999999999
Q ss_pred cCceeCCeEEEEeecCCCc
Q 016231 304 NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~ 322 (393)
|+..|.|+.|.|.++.+..
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 65 SQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp SCCEETTEECCCBCSCCSC
T ss_pred CCeEECCEEEEEEECCcCC
Confidence 9999999999999886543
No 162
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=9.5e-15 Score=137.04 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=70.9
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G--~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
..++|||+|||+++|+++|+.+|+.|| .|.+|+|++++. + +.++|||||+|.+.++|..||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~--t---------------g~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA--N---------------GQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT--T---------------CCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC--C---------------CccceEEEEEECCHHHHHHHH
Confidence 467899999999999999999999999 999999987642 2 346799999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCC
Q 016231 302 -AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~ 320 (393)
.||+..|.|+.|.|.++.+
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 5999999999999999864
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=1.9e-14 Score=114.33 Aligned_cols=73 Identities=12% Similarity=0.224 Sum_probs=66.6
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
+..++|||+|||+.+++++|+.+|+.| .|.+|+|. . ++|||||+|.+.++|..|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~---------------------~~g~afV~f~~~~~a~~Ai~ 58 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--R---------------------NKRTAFVTLLNGEQAQNAIQ 58 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--G---------------------GGTEEEECCSCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--C---------------------CCcEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999 99999882 1 4589999999999999999
Q ss_pred HhcCceeCCeEEEEeecC
Q 016231 302 AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~ 319 (393)
.||+..+.|+.|.|.++.
T Consensus 59 ~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 59 MFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp HHTTEEETTEEEEEEECC
T ss_pred HhCCCeECCcEEEEEEcC
Confidence 599999999999999985
No 164
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=2.3e-15 Score=131.20 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=70.1
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
...++|||+|||+++|+++|+++|+.|| |..|+|++++ + +.++|||||+|.+.++|+.||.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~--~----------------g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP--D----------------GRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS--S----------------SCSSCCCEEECSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC--C----------------CCCceEEEEEeCCHHHHHHHHh
Confidence 3468999999999999999999999999 6689886653 1 2367999999999999999999
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
+|+..|.||.|.|..+.+.
T Consensus 105 ~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 105 KDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCSCSSSSCCCCCEECCCS
T ss_pred hCCCEECCEEEEEEECCCC
Confidence 9999999999999998754
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=124.08 Aligned_cols=80 Identities=26% Similarity=0.283 Sum_probs=68.8
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEE--------EEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCC
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSV--------RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sV--------ri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s 293 (393)
..+.++|||+|||+.+|+++|+.+|+.||.|..| ++.. ++.++|||||+|.+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~--------------------~g~~~g~afV~f~~ 101 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--------------------EGRMKGQAFIGLPN 101 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE--------------------ETTTEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc--------------------CCCcccEEEEEeCC
Confidence 3457899999999999999999999999998764 2211 23467999999999
Q ss_pred HHHHHHHH-HhcCceeCCeEEEEeecCCC
Q 016231 294 EQSTEAAL-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 294 ~e~A~~Al-~lng~~~~Gr~I~V~~a~~~ 321 (393)
.++|..|| .|||..|.|+.|.|.++.+.
T Consensus 102 ~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 102 EKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 99999999 59999999999999999754
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=2.1e-14 Score=115.09 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=60.9
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.....+|||+|||+++|+++|+.+|++||.|.+|+|+++ ++|||||+|.+.++|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~-- 63 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS-- 63 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH--
Confidence 345789999999999999999999999999999998541 45999999999999884
Q ss_pred HhcCc--eeCCeEEEEeecCCC
Q 016231 302 AFNMA--VIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~--~~~Gr~I~V~~a~~~ 321 (393)
+++. .+.|+.|.|.++.+.
T Consensus 64 -~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -HTTCEEEETTEEEEEEECC--
T ss_pred -HcCCCcccCCEEEEEEEcCCC
Confidence 3444 456999999999754
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=111.56 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=67.1
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|| ++|+++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----------------------~~~g~afV~f~~~~~a~~Ai~ 67 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 67 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----------------------TTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34689999996 89999999999999999999882 14589999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 68 ~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 68 ELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp HTTTEEETTEEEEEECCSSCC
T ss_pred HhCCCeECCeEEEEEECCCCC
Confidence 799999999999999997643
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=127.40 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=73.1
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeE--------EEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCC
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~s--------Vri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s 293 (393)
....++|||+|||+.+++++|+.+|+.||.|.. |+|++++. ++.++|||||+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----------------~g~~~g~afV~f~~ 66 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-----------------TGKLKGEATVSFDD 66 (116)
Confidence 345789999999999999999999999999988 77765431 23466999999999
Q ss_pred HHHHHHHH-HhcCceeCCeEEEEeecCCCcc
Q 016231 294 EQSTEAAL-AFNMAVIGGNHIRLDRACPPRK 323 (393)
Q Consensus 294 ~e~A~~Al-~lng~~~~Gr~I~V~~a~~~~~ 323 (393)
.++|..|| .||+..|.|+.|.|.++.+...
T Consensus 67 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 67 PPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 99999999 5999999999999999976543
No 169
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=112.88 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=64.4
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
..++|||+|||+++|+++|+.+|+.||.|.+|+|+++ ++|||||+|.+.++|+.|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHHhcC
Confidence 4689999999999999999999999999999998431 348999999999999865432
Q ss_pred cCceeCCeEEEEeecCCCc
Q 016231 304 NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~ 322 (393)
...+.|+.|.|.++.+..
T Consensus 62 -~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 62 -DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp -EEEETTEEEEEECCCCCC
T ss_pred -CceeCCEEEEEEecCCCC
Confidence 345699999999997654
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.6e-13 Score=118.85 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=71.6
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|..|+++.++ .+ +.++|||||+|.+.++|..|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~--~~---------------~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM--QT---------------GSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT--TT---------------CCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC--CC---------------CCcceEEEEEeCCHHHHHHHHH
Confidence 447899999999999999999999999999999997754 12 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecC
Q 016231 302 AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~ 319 (393)
.|||..|.|+.|.|.++.
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 599999999999999985
No 171
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=7.7e-14 Score=127.49 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=69.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.++|||+|||+++|+++|+.+|+.||.|.+|+|+++. . +.++|||||+|.+.++|..||.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~---------------~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---H---------------KAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT---T---------------CCEEEEEEEEESSHHHHHHHHHCT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC---C---------------CCcccEEEEEECCHHHHHHHHHhC
Confidence 6899999999999999999999999999999997753 1 236799999999999999999766
Q ss_pred CceeCCeEEEEeecCC
Q 016231 305 MAVIGGNHIRLDRACP 320 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~ 320 (393)
+..|.|+.|.|.+...
T Consensus 171 ~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 171 GQKYKETDLLILFKDD 186 (193)
T ss_dssp TCEETTEECEEEETTT
T ss_pred CCeECCEEEEEEEhHH
Confidence 6799999999998754
No 172
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=4.9e-14 Score=127.19 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ + +.++|||||+|.+.++|..||
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~---------------g~~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---S---------------GRSLGTADVHFERRADALKAM 146 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT---T---------------SSCSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C---------------CCEeeEEEEEeCCHHHHHHHH
Confidence 3457899999999999999999999999999999996543 2 236699999999999999999
Q ss_pred -HhcCceeCCeEEEEeecCCC
Q 016231 302 -AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 -~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++...
T Consensus 147 ~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 147 KQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HHSTTCBCSSSBCEEEEESSG
T ss_pred HHhCCCEECCEEEEEEEecCC
Confidence 59999999999999998643
No 173
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=9.6e-14 Score=127.52 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=70.6
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
..+|||+|||+.+|+++|+.+|+.||.|..|+|+++. + .++|||||+|.+.++|..|| .|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~----~---------------~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE----N---------------GSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET----T---------------EEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC----C---------------CCceEEEEEeCCHHHHHHHHHHh
Confidence 4689999999999999999999999999999997754 1 14699999999999999999 69
Q ss_pred cCceeCCeEEEEeecCCC
Q 016231 304 NMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~ 321 (393)
||..|.|+.|.|.++.+.
T Consensus 164 ng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTCEETTEECEEEECCCH
T ss_pred CCCEECCEEEEEEEcCCC
Confidence 999999999999999754
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=1.6e-13 Score=124.47 Aligned_cols=81 Identities=23% Similarity=0.463 Sum_probs=72.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.++|||+|||+.+|+++|+.+|+.||.|..|+|++++. + +.++|||||+|.+.++|..|+ .|
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~---------------g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT--T---------------GKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC--C---------------CCcCceEEEEecCHHHHHHHHHHc
Confidence 58999999999999999999999999999999977542 2 236699999999999999999 59
Q ss_pred cCceeCCeEEEEeecCCCc
Q 016231 304 NMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~~~~ 322 (393)
|+..|.|+.|.|.++.++.
T Consensus 188 ~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TTCBCSSSBCEEEECSSCS
T ss_pred cCCEeCCcEEEEEEecCCC
Confidence 9999999999999997653
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.48 E-value=5.4e-14 Score=122.53 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=71.3
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.++|||+|||+.+|+++|+.+|+.||.|..|+++.++ .+ +.++|||||+|.+.++|..|+.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~~---------------g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK--DT---------------GQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS--SS---------------STTSEEEEEEESSHHHHHHHHHCS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC--CC---------------CccceEEEEEECCHHHHHHHHhCC
Confidence 4689999999999999999999999999999986643 12 346699999999999999999999
Q ss_pred CceeCCeEEEEeecCCC
Q 016231 305 MAVIGGNHIRLDRACPP 321 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~ 321 (393)
+..|.|+.|.|.++.+.
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999998753
No 176
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=9.1e-14 Score=142.14 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=72.4
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+.+|+++|..+|+.||.|..|.|+.++. + +.++|||||+|.+.++|..|| .
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~--t---------------g~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR--S---------------GKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC--C---------------CCccceEEEeeccHHHHHHHHHH
Confidence 468999999999999999999999999999999976542 2 336699999999999999999 7
Q ss_pred hcCceeCCeEEEEeecCCC
Q 016231 303 FNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~I~V~~a~~~ 321 (393)
||+..|.|+.|.|.++.+.
T Consensus 164 lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred cCCCEECCEEEEEEEeCCC
Confidence 9999999999999999753
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.9e-13 Score=122.10 Aligned_cols=81 Identities=17% Similarity=0.390 Sum_probs=70.8
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
.++|||+|||+.+|+++|+.+|+.||.|..|+|++++ .+ +.++|||||+|.+.++|..||..+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~---------------g~~~g~afV~F~~~~~A~~A~~~~ 166 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR--GS---------------GKKRGFAFVTFDDHDSVDKIVIQK 166 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT--TT---------------CCEEEEEEEEESSHHHHHHHHHCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC--CC---------------CCccceEEEEECCHHHHHHHHHhC
Confidence 5899999999999999999999999999999997754 12 236699999999999999999879
Q ss_pred CceeCCeEEEEeecCCCc
Q 016231 305 MAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~~~~ 322 (393)
+..|.|+.|.|.++.+..
T Consensus 167 ~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp CCEETTEECEEEECC---
T ss_pred CcEECCEEEEEEecCChh
Confidence 999999999999997654
No 178
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.8e-14 Score=118.08 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=65.5
Q ss_pred CcccEEEE--eCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHH
Q 016231 223 KLLRTIFV--GNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (393)
Q Consensus 223 ~~~rtVFV--gNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~A 300 (393)
.+.++||| ||||+++++++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~A 79 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRA 79 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHH
Confidence 34788999 77999999999999999999999988732 248999999999999999
Q ss_pred H-HhcCcee-----CCeEEEEeecC
Q 016231 301 L-AFNMAVI-----GGNHIRLDRAC 319 (393)
Q Consensus 301 l-~lng~~~-----~Gr~I~V~~a~ 319 (393)
+ .|||..| .|+.|.|.++.
T Consensus 80 i~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 80 YVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp HHHTTTCEEECTTSCEEECEEEEES
T ss_pred HHHhCCCEEccccCCCcEEEEEecc
Confidence 9 6999988 68999998875
No 179
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=1.6e-13 Score=120.10 Aligned_cols=78 Identities=18% Similarity=0.341 Sum_probs=70.2
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.++|||+|||+.+|+++|+.+|+.||.|..|++++++ .+ +.++|||||+|.+.++|..|+ .|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~---------------g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS--AT---------------GLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TT---------------CSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC--CC---------------CCcceEEEEEeCCHHHHHHHHHHc
Confidence 6899999999999999999999999999999997754 12 236699999999999999999 59
Q ss_pred cCceeCCeEEEEeecC
Q 016231 304 NMAVIGGNHIRLDRAC 319 (393)
Q Consensus 304 ng~~~~Gr~I~V~~a~ 319 (393)
||..|.|+.|.|.+|+
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999999873
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=114.87 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=63.4
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+++|+++|+.+|+.||.|. +.++.+.. +. ..+.++|||||+|.+.++|+.||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~--~~------------~~g~~~G~aFV~f~~~~~a~~Ai~ 70 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE--SK------------SYFPPKGYAFLLFQEESSVQALID 70 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS--SC------------CCSCTTSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC--CC------------CCCCcccEEEEEECCHHHHHHHHH
Confidence 3478999999999999999999999999999 77744331 10 01347799999999999999999
Q ss_pred HhcCceeCCeEEEEeecC
Q 016231 302 AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~ 319 (393)
.++ .++|+.|.+..+.
T Consensus 71 ~~~--~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 71 ACL--EEDGKLYLCVSSP 86 (114)
T ss_dssp HSE--EETTEEEEEECCS
T ss_pred hhh--hcCCcEEEeccCC
Confidence 564 4788888776543
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.45 E-value=7.7e-14 Score=116.75 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=63.8
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+++|+++|+.+|+.||.|..|.|+.+ |||||+|.+.++|..|| .
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------------------------g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------------------------SEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------------------------CEEEEEECCHHHHHHHHHH
Confidence 4688999999999999999999999999999988321 69999999999999999 5
Q ss_pred hcCceeCCeE-----EEEeecCCC
Q 016231 303 FNMAVIGGNH-----IRLDRACPP 321 (393)
Q Consensus 303 lng~~~~Gr~-----I~V~~a~~~ 321 (393)
||+..|.|+. |.|..+.+.
T Consensus 71 l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 71 LDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp HTTCBCCCTTSCCCBCEEEECC--
T ss_pred hCCCEECCcEeeeEEEEeccCCCC
Confidence 9999999988 777776543
No 182
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=1.8e-13 Score=122.42 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=68.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
-.+|||+|||+.+|+++|+.+|+.||.|.+|+|.... ++|||||+|.+.++|..|+ .|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---------------------~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------------------NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---------------------SCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 4679999999999999999999999999999984311 3489999999999999999 69
Q ss_pred cCceeCC--eEEEEeecCCCc
Q 016231 304 NMAVIGG--NHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~G--r~I~V~~a~~~~ 322 (393)
||..|.| +.|+|.++.+..
T Consensus 105 nG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp TTBCSSSSCSCEEEEECSSSS
T ss_pred CCCEecCCCcEEEEEEecCCc
Confidence 9999965 999999998653
No 183
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=4.3e-13 Score=115.69 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=67.3
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceE-EEEeeCCHHHHHHHH-H
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~-AFVeF~s~e~A~~Al-~ 302 (393)
-..|||+||++.+|+++|+.+|+.||.|.+|+|... ++|| |||+|.+.++|..|+ .
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 456889999999999999999999999999988542 2367 999999999999999 7
Q ss_pred hcCceeCC--eEEEEeecCCCc
Q 016231 303 FNMAVIGG--NHIRLDRACPPR 322 (393)
Q Consensus 303 lng~~~~G--r~I~V~~a~~~~ 322 (393)
|||..|.| +.|+|+++.+..
T Consensus 86 LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 86 LDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HTTCEEETTEEEEEEEECSCSS
T ss_pred cCCCeecCCCcEEEEEecCCCc
Confidence 99999988 999999997653
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=2.9e-13 Score=118.34 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=68.0
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+.+|+++|+.+|+.||.|.+|+|++++ . +.++|||||+|.+.++|..|+ .
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~---~---------------g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP---D---------------GLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---T---------------SCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC---C---------------CCEEEEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997753 1 235699999999999999999 7
Q ss_pred hcCceeC---CeEEEEeec
Q 016231 303 FNMAVIG---GNHIRLDRA 318 (393)
Q Consensus 303 lng~~~~---Gr~I~V~~a 318 (393)
|||..+. |++|.|.++
T Consensus 156 l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HTTSCCCTTCSSCCEEEEC
T ss_pred hcCCcccCCCCCCeEEEec
Confidence 9998776 499999987
No 185
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=3.4e-13 Score=120.61 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=73.3
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|..|+|++++ .+ +.++|||||+|.+.++|..|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~--~~---------------~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS--AT---------------GLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT--TT---------------CSEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC--CC---------------CCcceEEEEEECCHHHHHHHHH
Confidence 457999999999999999999999999999999997654 12 235699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCCc
Q 016231 302 AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~~ 322 (393)
.||+..|.|+.|.|.++.+..
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEECCCCC
Confidence 599999999999999997653
No 186
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=4.1e-13 Score=114.90 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=64.8
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceE-EEEeeCCHHHHHHHH-Hh
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~-AFVeF~s~e~A~~Al-~l 303 (393)
..|||+|||+.+|+++|+.+|+.||.|.+|+|... .|| |||+|.+.++|..|+ .|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 34789999999999999999999999999998331 166 999999999999999 69
Q ss_pred cCceeCC--eEEEEeecCCCc
Q 016231 304 NMAVIGG--NHIRLDRACPPR 322 (393)
Q Consensus 304 ng~~~~G--r~I~V~~a~~~~ 322 (393)
||..|.| +.|+|.++.+..
T Consensus 83 nG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp TTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEecCCCeEEEEEEecCCc
Confidence 9999987 699999997653
No 187
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=4.7e-13 Score=116.45 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=69.5
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+++++|+.+|+.||.|..|++++++. + +.++|||||+|.+.++|..|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL--T---------------GRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC--C---------------CCcceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999976541 2 235699999999999999999
Q ss_pred HhcCceeCC--eEEEEeec
Q 016231 302 AFNMAVIGG--NHIRLDRA 318 (393)
Q Consensus 302 ~lng~~~~G--r~I~V~~a 318 (393)
.||+..|.| +.|.|.+|
T Consensus 150 ~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEecCCCeEEEEEeC
Confidence 599999988 99999875
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=4.2e-13 Score=113.69 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=66.7
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|| ++|+++|+.+|+.||.|.+|.|.. ++|||||+|.+.++|..||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 34789999996 699999999999999999998831 4589999999999999999
Q ss_pred HhcCceeCCeEEEEeecCCC
Q 016231 302 AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~~ 321 (393)
.||+..|.|+.|.|.++.+.
T Consensus 92 ~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSS
T ss_pred HhCCCEECCeEEEEEEeCCC
Confidence 79999999999999999754
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.41 E-value=6.6e-13 Score=114.97 Aligned_cols=78 Identities=24% Similarity=0.335 Sum_probs=67.7
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-H
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ 302 (393)
..++|||+|||+.+++++|+.+|+.||.|..|+++.++. + +.++|||||+|.+.++|..|+ .
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--~---------------g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV--T---------------GVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--T---------------CCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC--C---------------CCccceEEEEeCCHHHHHHHHHH
Confidence 357899999999999999999999999999999976541 2 235699999999999999999 5
Q ss_pred hcCceeCCeE--EEEeec
Q 016231 303 FNMAVIGGNH--IRLDRA 318 (393)
Q Consensus 303 lng~~~~Gr~--I~V~~a 318 (393)
|||..|.|+. |.|.+|
T Consensus 150 l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 150 LNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCccCCCccceEEEeC
Confidence 9999999975 777765
No 190
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.6e-13 Score=115.24 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=65.2
Q ss_pred cEEEEeCC----CccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCC----HHH-
Q 016231 226 RTIFVGNL----PLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS----EQS- 296 (393)
Q Consensus 226 rtVFVgNL----p~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s----~e~- 296 (393)
..|||+|| |+.+++.+|+.+|+.||+|.+|.++.+| .++. ++|||||+|.+ ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp--~Tg~---------------slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDP--NSAL---------------PLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECT--TTCC---------------EEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCc---------------eeeEEEEEECCCCCCcchH
Confidence 57999999 9999999999999999999999999987 3444 55999999996 322
Q ss_pred ---HHHHHH---hcCceeCCeEEEEeecC
Q 016231 297 ---TEAALA---FNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 297 ---A~~Al~---lng~~~~Gr~I~V~~a~ 319 (393)
|..|+. +||..|.|+.|+|....
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 667764 79999999999999864
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=109.60 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=62.5
Q ss_pred cccE-EEEeCCCccCCHHH----HHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 224 LLRT-IFVGNLPLKVKKKT----LIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 224 ~~rt-VFVgNLp~~~tee~----L~~~Fs~~-G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
++.| |||+|||+.+++++ |+.+|+.| |.|.+|. .|+|||.|.+.++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA 59 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSA 59 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHH
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHH
Confidence 4666 99999999999988 55899999 5998771 07999999999999
Q ss_pred HHHH-HhcCceeCCeEEEEeecCCC
Q 016231 298 EAAL-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 298 ~~Al-~lng~~~~Gr~I~V~~a~~~ 321 (393)
..|+ .|||..|.||+|+|.++...
T Consensus 60 ~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 60 ERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred HHHHHHhcCCccCCceEEEEecCCC
Confidence 9999 79999999999999999754
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=2.5e-12 Score=106.59 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=68.8
Q ss_pred CcccEEEEeCCCc-----cCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 223 KLLRTIFVGNLPL-----KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 223 ~~~rtVFVgNLp~-----~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
.++++|+|+||.. +.++++|+.+|++||.|.+|.|++++.. + +.++|||||+|.+.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~-~---------------~~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA-P---------------DDEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC-C---------------TTTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC-C---------------CCCcEEEEEEECCHHHH
Confidence 3579999999963 2478999999999999999999775421 1 23669999999999999
Q ss_pred HHHH-HhcCceeCCeEEEEeecCC
Q 016231 298 EAAL-AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 298 ~~Al-~lng~~~~Gr~I~V~~a~~ 320 (393)
..|+ .|||..|.||.|.|.++..
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHCCCEECCcEEEEEEcCH
Confidence 9999 7999999999999999853
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=8.9e-13 Score=124.80 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=68.7
Q ss_pred CCcccEEEEeCCCccC---------CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 222 GKLLRTIFVGNLPLKV---------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~---------tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
....++|||||||+.+ ++++|+.+|+.||.|.+|+|+. ++|||||+|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeC
Confidence 4568999999999998 7999999999999999999853 3489999999
Q ss_pred CHHHHHHHH-HhcCcee------------CCeEEEEeecCC
Q 016231 293 SEQSTEAAL-AFNMAVI------------GGNHIRLDRACP 320 (393)
Q Consensus 293 s~e~A~~Al-~lng~~~------------~Gr~I~V~~a~~ 320 (393)
+.++|+.|+ .|++..| .|+.|.|.|+..
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 999999999 7999999 899999999964
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=2.3e-12 Score=113.35 Aligned_cols=76 Identities=29% Similarity=0.322 Sum_probs=66.0
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
...++|||+|||+.+|+++|+.+|+.||.|..+ . .+ +.++|||||+|.+.++|..|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~--~~---------------~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----S--QD---------------GKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----C--SS---------------SSCCSEEEEECSSHHHHHHHHH
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----c--CC---------------CCCceEEEEEECCHHHHHHHHH
Confidence 347899999999999999999999999987644 1 12 236699999999999999999
Q ss_pred HhcCceeCCeEEEEeecCC
Q 016231 302 AFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 302 ~lng~~~~Gr~I~V~~a~~ 320 (393)
.|||..|.|+.|.|.++.+
T Consensus 155 ~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHTEEEETTEEEEEEECSS
T ss_pred HhCCCEECCeEEEEEecCC
Confidence 5999999999999999864
No 195
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.35 E-value=8.9e-13 Score=107.67 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=51.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....++|||+|||+++|+++|+++|+.| |.|.+|+|++|+.+|.++|||||+|.++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCCcccccEEEEECCH
Confidence 3345789999999999999999999999 9999999999999999999999999874
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.7e-12 Score=104.29 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCCcccEEEEeCCCccC-----------CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEE
Q 016231 221 EGKLLRTIFVGNLPLKV-----------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYI 289 (393)
Q Consensus 221 ~~~~~rtVFVgNLp~~~-----------tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFV 289 (393)
...++++|+|.||.... ++++|+.+|++||.|.+|.| .+. .++|||||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--------------------~~~G~afV 69 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--------------------HPDGVASV 69 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--------------------CTTCEEEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--------------------CCCEEEEE
Confidence 34568999999994332 26899999999999999966 221 14599999
Q ss_pred eeCCHHHHHHHH-HhcCceeCCeEEEEeecCCCc
Q 016231 290 VFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPR 322 (393)
Q Consensus 290 eF~s~e~A~~Al-~lng~~~~Gr~I~V~~a~~~~ 322 (393)
+|.+.++|..|+ .|||..|.|+.|.|.++.+..
T Consensus 70 ~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 70 SFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp ECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 999999999999 799999999999999997643
No 197
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.33 E-value=2.8e-13 Score=108.81 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=50.0
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCC-CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G-~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+++|||+|||+++|+++|+++|+.| | .|.+|+|++|+.+|.++|||||+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~ 54 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSGQSRGFAFVEFSHL 54 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSCCCSSEEEEECSSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCCCcCceEEEEecCH
Confidence 3689999999999999999999999 8 899999999999999999999999874
No 198
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.32 E-value=6.1e-13 Score=108.29 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=49.7
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCC--CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G--~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.-.||||+|||+++|+++|+++|+.| | .|..|+|++|+.+|.+||||||+|.++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~----G~i~v~~v~i~~d~~tg~srG~aFV~f~~~ 63 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPY----ASLAVNNIRLIKDKQTQQNRGFAFVQLSSA 63 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTT----CCCCGGGEECCCCSSSSSCSSEEEEECSSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhh----CCccEEEEEEEecCCCCCCceEeEEEECCH
Confidence 34799999999999999999999999 7 467999999999999999999999874
No 199
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.32 E-value=4.7e-12 Score=120.19 Aligned_cols=76 Identities=24% Similarity=0.261 Sum_probs=68.4
Q ss_pred CCcccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
....++|||+|||+.+|+++|+.+|+.||.|.+|+|+.+ .+|||||+|.+.++|..||
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~----------------------~~g~afV~f~~~~~A~~A~ 261 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG----------------------RHDIAFVEFDNEVQAGAAR 261 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC----------------------CCcEEEEEeCCHHHHHHHH
Confidence 345789999999999999999999999999999998532 1389999999999999999
Q ss_pred -HhcCceeC-CeEEEEeecC
Q 016231 302 -AFNMAVIG-GNHIRLDRAC 319 (393)
Q Consensus 302 -~lng~~~~-Gr~I~V~~a~ 319 (393)
.|||..|. |+.|.|.++.
T Consensus 262 ~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 262 DALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHcCCcEeCCCCEEEEEEec
Confidence 69999999 9999999974
No 200
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.30 E-value=1.1e-12 Score=113.03 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=54.1
Q ss_pred eEEEEeeCCHHHHHHHH-HhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCC
Q 016231 285 VHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDL 363 (393)
Q Consensus 285 G~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~ 363 (393)
-|+|++|.+...+..|| .+++....|+. .+.+..+ .+...+.++|||+|||+.+++++|+++|+.|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--- 71 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY--- 71 (135)
T ss_dssp -------------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGG---
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc---
Confidence 47888888888888888 57776655543 1112211 2234467899999999999999999999999
Q ss_pred CCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 364 ~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|.|..|+|++++.+|.++|||||+|.+.
T Consensus 72 -G~i~~v~i~~~~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 72 -GRVGDVYIPRDRYTKESRGFAFVRFHDK 99 (135)
T ss_dssp -SCCSEEECCCCSSSSSCCSCCEEECSCH
T ss_pred -CCEEEEEEEecCCCCccceEEEEEECCH
Confidence 9999999999998999999999999874
No 201
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.30 E-value=3.8e-12 Score=100.22 Aligned_cols=56 Identities=21% Similarity=0.474 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 63 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTGRSRGFGFILFKDA 63 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccccEEEEEECCH
Confidence 3456899999999999999999999999 9999999999999999999999999874
No 202
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.29 E-value=3e-12 Score=115.14 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=68.3
Q ss_pred CcccEEEEeCCCccCCHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 223 ~~~rtVFVgNLp~~~tee~L~~~Fs~~G-~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
.+.++|||+|||+.+++++|+.+|+.|| .|..|+|+.. ++|||||+|.+.++|..|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~ 175 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQAL 175 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHH
Confidence 3479999999999999999999999999 9999998331 2489999999999999999
Q ss_pred -HhcCceeC-CeEEEEeecCC
Q 016231 302 -AFNMAVIG-GNHIRLDRACP 320 (393)
Q Consensus 302 -~lng~~~~-Gr~I~V~~a~~ 320 (393)
.|||..|. |+.|.|.++.+
T Consensus 176 ~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 176 IDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHTSSCCSSCCSCCEEEECC
T ss_pred HHhcCCccCCCCeEEEEeecc
Confidence 69999999 99999999864
No 203
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.9e-12 Score=104.81 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=50.3
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++|||+|||+++|+++|+++|+.| |.|.+|+|++++. |.++|||||+|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~-g~~rG~aFV~F~~~ 62 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLH-KAFKGSIFVVFDSI 62 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCT-TSCCCEEEEEESSH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCC-CCCccEEEEEECCH
Confidence 346899999999999999999999999 9999999999987 99999999999874
No 204
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.29 E-value=3.3e-12 Score=106.40 Aligned_cols=55 Identities=27% Similarity=0.344 Sum_probs=51.8
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++|+.+|.++|||||+|.+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~ 58 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTRKHLGLARVLFTST 58 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCceeeEEEEEECCH
Confidence 356899999999999999999999999 9999999999999999999999999874
No 205
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=7.6e-12 Score=116.03 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=67.9
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G-~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al- 301 (393)
+.++|||+|||+.+++++|+.+|+.|| .|..|+|+.. ++|||||+|.+.++|..|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 9999998321 3489999999999999999
Q ss_pred HhcCceeC-CeEEEEeecCC
Q 016231 302 AFNMAVIG-GNHIRLDRACP 320 (393)
Q Consensus 302 ~lng~~~~-Gr~I~V~~a~~ 320 (393)
.|||..|. |+.|.|.++.+
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSS
T ss_pred HHCCCccCCCCeEEEEEecC
Confidence 59999999 99999999864
No 206
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.27 E-value=4.1e-12 Score=112.56 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=52.0
Q ss_pred EeeCCHHHHHHHH-HhcCceeC--CeEEEEeecCCCcccC-----------CCCCCCCcCCcceeeeCCCCCCCCHHHHH
Q 016231 289 IVFKSEQSTEAAL-AFNMAVIG--GNHIRLDRACPPRKKL-----------KGEDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (393)
Q Consensus 289 VeF~s~e~A~~Al-~lng~~~~--Gr~I~V~~a~~~~~~~-----------~~~~~~~~~~~~tLfVgNLp~~~teedL~ 354 (393)
.+|.+.+++..|+ .+++.... |+.+.+.++....... .........+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7889999999998 67776654 6666665532211000 00011123456789999999999999999
Q ss_pred HHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 355 e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+|..| |.|..|.|+.++.+|.++|||||+|.+.
T Consensus 91 ~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 124 (165)
T 1rk8_A 91 EKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETH 124 (165)
T ss_dssp HHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESSH
T ss_pred HHhhcC----CCEEEEEEEecCCCCcEeeEEEEEECCH
Confidence 999999 9999999999999999999999999863
No 207
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=8.7e-12 Score=100.61 Aligned_cols=56 Identities=20% Similarity=0.436 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 62 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQRPRGFGFITFEDE 62 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTCSCCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCCCceEEEEECCH
Confidence 4467899999999999999999999999 9999999999999999999999999864
No 208
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.26 E-value=1.8e-11 Score=115.74 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=68.5
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
.++|||+|||+.+|+++|+.+|+.||.|..|+|+.+. + +.++|||||+|.+.++|..|| .|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~---~---------------g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD---R---------------GRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET---T---------------SCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC---C---------------CCcCcEEEEEeCCHHHHHHHHHHh
Confidence 5789999999999999999999999999999997763 2 236699999999999999999 67
Q ss_pred -cCceeC---CeEEEEeecCCC
Q 016231 304 -NMAVIG---GNHIRLDRACPP 321 (393)
Q Consensus 304 -ng~~~~---Gr~I~V~~a~~~ 321 (393)
++..+. |+.|.|.++.+.
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCE
T ss_pred cCCeEEecCCCceEEEeecccc
Confidence 555555 999999998754
No 209
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.26 E-value=1.3e-12 Score=133.71 Aligned_cols=55 Identities=16% Similarity=0.381 Sum_probs=51.7
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+..+|||+|||+.+|+++|.++|..| |.|..|.|+.++.+|.++|||||+|.+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~ 154 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSGKPRGYAFIEYEHE 154 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCCCccceEEEeeccH
Confidence 456899999999999999999999999 9999999999999999999999999874
No 210
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=2e-11 Score=101.03 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=67.6
Q ss_pred CcccEEEEeCC--CccC--------CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 223 KLLRTIFVGNL--PLKV--------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 223 ~~~rtVFVgNL--p~~~--------tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
.+++.|.|.|| |..+ .+++|+.+|++||.|.+|.|++++.... +.++|||||+|.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~---------------~~~~G~~fV~f~ 67 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE---------------VPGCGKIFVEFT 67 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC---------------CTTTTEEEEEES
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC---------------cCCcEEEEEEEC
Confidence 35789999998 4343 3479999999999999999976542111 135699999999
Q ss_pred CHHHHHHHH-HhcCceeCCeEEEEeecC
Q 016231 293 SEQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 293 s~e~A~~Al-~lng~~~~Gr~I~V~~a~ 319 (393)
+.++|..|+ .|||..|.||.|.|.++.
T Consensus 68 ~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 68 SVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 999999999 799999999999999875
No 211
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=4e-12 Score=104.98 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=60.4
Q ss_pred EeCCCccCCHHHHHHHh------------cccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 230 VGNLPLKVKKKTLIKEF------------IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 230 VgNLp~~~tee~L~~~F------------s~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
+.|||+.+++++|+++| ++||.|.+|+|+++. . +.++|||||.|.+.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~---~---------------~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL---G---------------DHLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS---S---------------SSSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC---C---------------CCccEEEEEEECCHHHH
Confidence 56788888888887777 999999999996543 1 23679999999999999
Q ss_pred HHHH-HhcCceeCCeEEEEeec
Q 016231 298 EAAL-AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 298 ~~Al-~lng~~~~Gr~I~V~~a 318 (393)
..|+ .|||..|.||.|.|.++
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 9999 79999999999999886
No 212
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=7.7e-12 Score=98.03 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=51.2
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||+.+++++|+++|+.| |.|..|+|+.++.+|.++|||||+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~ 57 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTNKCKGYGFVDFDSP 57 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSCSCCSEEEEEESCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCcEEEEEECCH
Confidence 56899999999999999999999999 9999999999999999999999999874
No 213
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=1.2e-11 Score=113.87 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=63.9
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCe--eEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI--DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I--~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al 301 (393)
+.++|||+|||+.+|+++|+++|+.||.| .+|+++.+. +. ++|||||+|.+.++|..||
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~----~~---------------~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK----SE---------------RSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC----SS---------------SSEEEEEECSSHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC----CC---------------CceEEEEEeCCHHHHHHHH
Confidence 46899999999999999999999999999 888884432 11 3489999999999999999
Q ss_pred -HhcCceeCCe----EEEEeec
Q 016231 302 -AFNMAVIGGN----HIRLDRA 318 (393)
Q Consensus 302 -~lng~~~~Gr----~I~V~~a 318 (393)
.||+..|.|+ ++.|.+|
T Consensus 183 ~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 183 GFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHTTCEECCSSSSSCEECEEE
T ss_pred HHhCCCCccCCCCCcceEEEec
Confidence 7999999886 4555543
No 214
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-11 Score=100.75 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=52.7
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~ 68 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTNQSRGFGFVKFKDP 68 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCCcceEEEEEECCH
Confidence 4567899999999999999999999999 9999999999999999999999999875
No 215
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=1e-11 Score=101.97 Aligned_cols=56 Identities=34% Similarity=0.555 Sum_probs=52.4
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTEHSKGCAFAQFMTQ 67 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCCBCSEEEEEESSH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCccEEEEEECCH
Confidence 4467899999999999999999999999 9999999999999999999999999864
No 216
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=97.43 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=50.6
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCccceEEEEEECCH
Confidence 356899999999999999999999999 9999999999998999999999999864
No 217
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.23 E-value=1.1e-11 Score=96.32 Aligned_cols=52 Identities=25% Similarity=0.427 Sum_probs=49.7
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCccceEEEEECCH
Confidence 589999999999999999999999 9999999999999999999999999874
No 218
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=4.6e-11 Score=101.10 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=68.4
Q ss_pred cccEEEEeCCCc--cC---CHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 224 LLRTIFVGNLPL--KV---KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 224 ~~rtVFVgNLp~--~~---tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
++++|+|.||-. .+ .+++|++.|++||.|.+|.|++++...... +.++|||||+|.+.++|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~-------------~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEED-------------AEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTT-------------CEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccC-------------CcceEEEEEEECCHHHHH
Confidence 479999999932 22 378999999999999999998876321111 235699999999999999
Q ss_pred HHH-HhcCceeCCeEEEEeecC
Q 016231 299 AAL-AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 299 ~Al-~lng~~~~Gr~I~V~~a~ 319 (393)
.|+ .|||..|.||.|.|.++.
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHCCCEECCcEEEEEEcC
Confidence 999 799999999999999875
No 219
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.23 E-value=8.5e-12 Score=97.49 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=51.7
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 59 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELA 59 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCH
Confidence 457899999999999999999999999 9999999999999999999999999874
No 220
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.22 E-value=4.6e-12 Score=100.89 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=47.3
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCC--CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G--~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+|||+|||+++++++|+++|+.| | .|..|+|++++.+|.++|||||+|.+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~ 55 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSE 55 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT----TCCCCCCEEEEECTTTCCEEEEEEECC-CH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh----CCCceEEEEEEecCCCCccCcEEEEEECCH
Confidence 489999999999999999999999 8 999999999999999999999999874
No 221
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.3e-11 Score=100.36 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=52.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTGHSKGFGFVRFTEY 67 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCCCccceEEEEECCH
Confidence 4456899999999999999999999999 9999999999999999999999999864
No 222
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.6e-11 Score=99.83 Aligned_cols=56 Identities=29% Similarity=0.462 Sum_probs=52.6
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.++.+|.++|||||+|.+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 65 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDR 65 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCH
Confidence 4567899999999999999999999999 9999999999999999999999999874
No 223
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.22 E-value=9.9e-12 Score=102.87 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=50.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~afV~f~~~ 77 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQ 77 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTCCCTTCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCCCcCcEEEEEECCH
Confidence 3456899999999999999999999999 9999999999999999999999999864
No 224
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.22 E-value=1.1e-11 Score=99.57 Aligned_cols=54 Identities=24% Similarity=0.570 Sum_probs=50.8
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||..+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 54 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDL 54 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCH
Confidence 35799999999999999999999999 9999999999999999999999999864
No 225
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=99.34 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=52.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeE-EEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE-AVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~-~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| |.|. .|+|++++.+|.++|||||+|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 4467899999999999999999999999 9999 999999999999999999999874
No 226
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=1.5e-11 Score=99.14 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=52.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 60 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFP 60 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCH
Confidence 3457899999999999999999999999 9999999999988999999999999874
No 227
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.22 E-value=1.8e-11 Score=96.48 Aligned_cols=53 Identities=28% Similarity=0.542 Sum_probs=50.5
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSSSCCEEEEEEESST
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 5799999999999999999999999 9999999999999999999999999874
No 228
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=97.70 Aligned_cols=54 Identities=15% Similarity=0.457 Sum_probs=51.2
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 56899999999999999999999999 9999999999999999999999999874
No 229
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=6.8e-12 Score=96.21 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=49.4
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~ 52 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQ 52 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT----SCCCCEEEECCCCSSSCSSEEEECCCCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEecCCCCCCcCceEEEEEcCH
Confidence 479999999999999999999999 9999999999999999999999999875
No 230
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.1e-11 Score=97.23 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=52.5
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~ 67 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENV 67 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSSSEEEEEEEEESSH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCcccEEEEEECCH
Confidence 4567899999999999999999999999 9999999999999999999999999874
No 231
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.21 E-value=6.9e-12 Score=106.95 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=51.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE--EEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~--VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..+.++|||+|||+++|+++|+++|..| |.|.. |+|++|+.+|.++|||||+|.+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY----AVLSSSNVRVIKDKQTQLNRGFAFIQLST 76 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG----CCCCTTTEECCBCSSSSSBCSCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceeeEEEEEcCCCCCcceEEEEEECC
Confidence 3467899999999999999999999999 99977 9999999999999999999986
No 232
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=6.4e-12 Score=96.03 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=48.8
Q ss_pred eeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 338 tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTNKRRGFCFITFKEE 51 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCSSSCCCEEEECSSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCCEEEEEECCH
Confidence 69999999999999999999999 9999999999999999999999999874
No 233
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.20 E-value=4.8e-12 Score=103.06 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=50.9
Q ss_pred CcceeeeCCCCC------CCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPF------DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~------~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+ ++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg~~kG~afV~f~~~ 64 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATGKTKGFLFVECGSM 64 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCCccceEEEEEECCH
Confidence 357999999999 99999999999999 9999999999999999999999999874
No 234
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.20 E-value=9.2e-12 Score=95.26 Aligned_cols=51 Identities=20% Similarity=0.443 Sum_probs=48.6
Q ss_pred eeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 338 tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTNRHRGFGFVTFESE 51 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSSTTSCBEEEEECSCH
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 59999999999999999999999 9999999999998999999999999874
No 235
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=96.72 Aligned_cols=56 Identities=32% Similarity=0.691 Sum_probs=52.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+.++.+|.++|||||+|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 4457899999999999999999999999 9999999999999999999999999874
No 236
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=98.78 Aligned_cols=55 Identities=29% Similarity=0.494 Sum_probs=51.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhc-CCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~-~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+..+|||+|||+++++++|+++|.. | |.|..|+|++++ +|.++|||||+|.+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~ 61 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQ-TGVSKGYGFVKFTDE 61 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECT-TCCEEEEEEEEESCH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCH
Confidence 345689999999999999999999999 9 999999999998 999999999999874
No 237
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.20 E-value=1.2e-11 Score=100.80 Aligned_cols=56 Identities=18% Similarity=0.427 Sum_probs=52.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 65 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTGMHKGCAFLTYCER 65 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSCSCCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcceEEEEEECCH
Confidence 4457899999999999999999999999 9999999999999999999999999863
No 238
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.6e-11 Score=98.68 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 4467899999999999999999999999 9999999999998999999999999874
No 239
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.4e-11 Score=100.63 Aligned_cols=55 Identities=31% Similarity=0.475 Sum_probs=51.5
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSRRSKGIAYVEFCEI 77 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSSSCCCCEEEEESCG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCCccCcEEEEEeCcH
Confidence 346899999999999999999999999 9999999999999999999999999874
No 240
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2e-11 Score=98.92 Aligned_cols=56 Identities=23% Similarity=0.501 Sum_probs=52.4
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| |.|..|+|++++.++.++|||||+|.++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 4567899999999999999999999999 9999999999999999999999999874
No 241
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=2.9e-11 Score=98.33 Aligned_cols=55 Identities=35% Similarity=0.564 Sum_probs=51.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| | |..|+|++++.+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g-i~~v~i~~~~~~g~~~g~afV~f~~~ 66 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL----S-IRSVRLVRDKDTDKFKGFCYVEFDEV 66 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS----C-EEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----C-ceEEEEeecCCCCccceEEEEEECCH
Confidence 4567899999999999999999999999 7 99999999999999999999999864
No 242
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.8e-11 Score=100.49 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.++.++|||||+|.+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 69 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTGKSRGYGFVTMADR 69 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSCCCCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCCccceEEEEEECCH
Confidence 4467899999999999999999999999 9999999999999999999999999864
No 243
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.3e-11 Score=99.25 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=52.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 75 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETY 75 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCCceeeEEEEEECCH
Confidence 3456899999999999999999999999 9999999999999999999999999874
No 244
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=98.31 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=52.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE--------EEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~--------VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+..+|||+|||+++++++|+++|+.| |.|.. |+|++++.+|.++|||||+|.+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~ 73 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP 73 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCCCeeeEEEEEECCH
Confidence 4567899999999999999999999999 99999 99999999999999999999864
No 245
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.19 E-value=7.9e-12 Score=108.79 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=47.9
Q ss_pred eEEEEeeCCHHHHHHHHHhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCC
Q 016231 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (393)
Q Consensus 285 G~AFVeF~s~e~A~~Al~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~ 364 (393)
|+||.+|..+..+..++..-...+.|....-..... ..........+|||+|||+++|+++|+++|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~-------~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~---- 70 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDS-------EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL---- 70 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSC----
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCc-------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----
Confidence 688999988877766653222223333221111000 001123356799999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 365 G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
| |..|+|++|+. |.++|||||+|.++
T Consensus 71 G-i~~v~i~~d~~-g~srGfaFV~F~~~ 96 (139)
T 2hgn_A 71 N-PVRVHIEIGPD-GRVTGEADVEFATH 96 (139)
T ss_dssp C-CSEEECCCSSS-SCSSCCCEEECSHH
T ss_pred C-CeEEEEEECCC-CCCceEEEEEeCCH
Confidence 8 67999999975 99999999999864
No 246
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.19 E-value=5.1e-11 Score=99.13 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~ 92 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTSLSKCFGFVSFDNP 92 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSSCCCCEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCcCcEEEEEECCH
Confidence 4456899999999999999999999999 9999999999999999999999999874
No 247
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.6e-11 Score=99.27 Aligned_cols=55 Identities=29% Similarity=0.393 Sum_probs=50.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE-EEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~-VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+++++++|+++|..| |.|.. |+|+.+ .+|.++|||||+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~-~~g~~~G~afV~F~~~ 67 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVD-FQGRSTGEAFVQFASQ 67 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBC-SSSCBCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEEC-CCCCcceEEEEEECCH
Confidence 4456899999999999999999999999 89987 999999 7999999999999874
No 248
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.18 E-value=3.4e-11 Score=99.70 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4467899999999999999999999999 9999999999998999999999999864
No 249
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.5e-11 Score=98.44 Aligned_cols=54 Identities=22% Similarity=0.519 Sum_probs=51.0
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEE-EEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV-RVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~V-rI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||+.+++++|+++|+.| |.|..| +|++++.+|.++|||||+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 56899999999999999999999999 999999 9999999999999999999874
No 250
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.18 E-value=2.3e-11 Score=98.62 Aligned_cols=54 Identities=31% Similarity=0.533 Sum_probs=50.5
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++|||+|||+++++++|+++|+.| |.|..|+|++++ +|.++|||||+|.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~ 60 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDR-TGVSKGYGFVSFYND 60 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TSCEEEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCH
Confidence 356899999999999999999999999 999999999998 999999999999874
No 251
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.4e-11 Score=98.70 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTGQSKGFAFISFHRR 67 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCCceeeEEEEEECCH
Confidence 4467899999999999999999999999 9999999999999999999999999864
No 252
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=4.1e-11 Score=97.73 Aligned_cols=56 Identities=25% Similarity=0.511 Sum_probs=52.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeec-CCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH-PHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d-~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++ ..+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~ 68 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITK 68 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCH
Confidence 4467899999999999999999999999 99999999999 78999999999999874
No 253
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.7e-11 Score=99.25 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=52.4
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELA 64 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSCCCSSEEEECCSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4567899999999999999999999999 9999999999999999999999999864
No 254
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.17 E-value=4.6e-11 Score=97.20 Aligned_cols=54 Identities=28% Similarity=0.517 Sum_probs=50.4
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++++ +|.++|||||+|.+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~ 66 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGP-DGSSKGCAFVKFSSH 66 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECS-SSCEEEEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcCcEEEEEeCCH
Confidence 457899999999999999999999999 999999999997 799999999999864
No 255
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=5.2e-11 Score=96.19 Aligned_cols=55 Identities=25% Similarity=0.472 Sum_probs=50.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+.++ +|.++|||||+|.+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~ 68 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNR-AGKPKGLAYVEYENE 68 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TSCEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCEEeEEEEEECCH
Confidence 3457899999999999999999999999 999999999997 899999999999874
No 256
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=107.38 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=50.1
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCC--CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G--~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+.+++++|+++|..| | .|..|+|++|+.+|.++|||||+|.++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 45799999999999999999999999 9 999999999999999999999999874
No 257
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.17 E-value=3e-11 Score=99.87 Aligned_cols=56 Identities=16% Similarity=0.426 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~ 78 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDS 78 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTTEEEEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 4467899999999999999999999999 9999999999999999999999999874
No 258
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.16 E-value=4e-11 Score=95.68 Aligned_cols=55 Identities=31% Similarity=0.522 Sum_probs=50.7
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++. |.++|||||+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~-g~~~g~afV~f~~~ 67 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDRE-GKPKSFGFVCFKHP 67 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTT-SCEEEEEEEEESST
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCC-CCCceEEEEEECCH
Confidence 4467899999999999999999999999 9999999999975 99999999999874
No 259
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.9e-11 Score=98.51 Aligned_cols=55 Identities=40% Similarity=0.654 Sum_probs=50.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC-CCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t-g~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| | |..|+|++++.+ |.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~ 67 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDL 67 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTTSBCSCEEEEESSH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCCCcCeEEEEEECCH
Confidence 3467899999999999999999999999 9 999999999987 99999999999864
No 260
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.16 E-value=3.2e-11 Score=99.08 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=52.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+.++.+|.++|||||+|.+.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 78 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETH 78 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 3456899999999999999999999999 9999999999999999999999999874
No 261
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.16 E-value=2.7e-11 Score=100.52 Aligned_cols=56 Identities=18% Similarity=0.366 Sum_probs=51.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 3456899999999999999999999999 9999999999998999999999999864
No 262
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.16 E-value=2.6e-11 Score=96.89 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=45.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+..+|||+|||+++|+++|+++|+.| |.|..|+|+++ ++|||||+|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~-----srGfaFV~F~~~ 58 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKP-----FRAFAFVTFADD 58 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSS-----CCSEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeC-----CCCEEEEEECCH
Confidence 3456899999999999999999999999 99999999886 799999999874
No 263
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.9e-11 Score=100.46 Aligned_cols=55 Identities=20% Similarity=0.512 Sum_probs=51.4
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~ 79 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASKRSRGFGFVTFSSM 79 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTSSCCSEEEEECSSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCcCceEEEEeCCH
Confidence 346899999999999999999999999 9999999999999999999999999864
No 264
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.3e-11 Score=100.18 Aligned_cols=55 Identities=22% Similarity=0.542 Sum_probs=51.5
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTTEEEEEEEEECSCH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCCccceEEEEEECCH
Confidence 356899999999999999999999999 9999999999999999999999999864
No 265
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.1e-11 Score=101.48 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=50.6
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCe-EEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV-EAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I-~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| |.| ..|+|++++ +|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~v~i~~d~-~g~~~G~afV~F~~~ 67 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI----PVDENAVHVLVDN-NGQGLGQALVQFKNE 67 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS----CCCSTTEEECCCT-TSSCSSCEEEECSSH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC----CCcCCeEEEEECC-CCCcceEEEEEECCH
Confidence 3456899999999999999999999999 899 899999997 999999999999864
No 266
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.15 E-value=2.8e-11 Score=100.99 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=46.7
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+|||+|||+++++++|+++|+.| |.|.+|+|+++. +.++|||||+|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~--~~~kg~afV~f~~~ 55 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSKGYGFVHFETQ 55 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEEEEEEEEESCH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecC--CCCCceEEEEECCH
Confidence 4689999999999999999999999 999999999995 45899999999874
No 267
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.15 E-value=2.4e-11 Score=97.64 Aligned_cols=54 Identities=17% Similarity=0.426 Sum_probs=49.8
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCC---CCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~---tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||+++++++|+++|+.| |.|..|+|++++. ++.++|||||+|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 56899999999999999999999999 9999999999876 668999999999864
No 268
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.14 E-value=7.1e-11 Score=100.93 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=52.5
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~ 98 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENV 98 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSSCCCCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCH
Confidence 4567899999999999999999999999 9999999999999999999999999874
No 269
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.14 E-value=2.5e-11 Score=105.13 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=50.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCC---eEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~---I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+++|+++|+++|..| |. |..|+|++|+. |.++|||||+|.++
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~----G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~ 98 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDC----TIHDGAAGVHFIYTRE-GRQSGEAFVELGSE 98 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTC----CCSSSSTTEEEEECSS-SCEEEEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcCceeEEEEEECCC-CCCCeEEEEEECCH
Confidence 3456899999999999999999999999 88 89999999987 99999999999874
No 270
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=3.8e-11 Score=98.45 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=48.3
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....+|||+|||+++|+++|+++|..| |. ..|+|++++ +|.++|||||+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~-~~v~i~~d~-~g~~~G~afV~F~~~ 65 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPL----NP-MRVHIEIGP-DGRVTGEADVEFATH 65 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSC----CC-SEEEEEESS-SSCEEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----Cc-eEEEEEECC-CCCEeeEEEEEECCH
Confidence 456899999999999999999999999 84 499999997 899999999999874
No 271
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.13 E-value=1.4e-11 Score=97.56 Aligned_cols=52 Identities=25% Similarity=0.531 Sum_probs=49.7
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 53 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETKKPKGFGFVEMQEE 53 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSCCCCEEEEEEECTT
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 589999999999999999999999 9999999999999999999999999874
No 272
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.13 E-value=6.3e-11 Score=96.75 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=51.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++ +|.++|||||+|.+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDR-SGRSLGTADVHFERK 80 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECT-TSCEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcceEEEEEECCH
Confidence 4567899999999999999999999999 999999999998 999999999999864
No 273
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=5.3e-11 Score=97.51 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=50.3
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCC-eEEEEEe-ecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVI-RHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~-I~~VrI~-~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||+.+++++|+++|..| |. |..|.|+ .+..+|.++|||||+|.+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 56899999999999999999999999 88 9999999 8888899999999999864
No 274
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.12 E-value=2.8e-11 Score=98.23 Aligned_cols=55 Identities=40% Similarity=0.661 Sum_probs=48.6
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecC-CCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~-~tg~~kGfaFVeF~t~ 392 (393)
....++|||+|||+++++++|+++|+.| | |..|+|++++ .+|.++|||||+|.+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~ 71 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDL 71 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTCCCCSCEEEEECCH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCCccCeEEEEEECCH
Confidence 4457899999999999999999999999 9 9999999998 6899999999999874
No 275
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.12 E-value=8e-11 Score=99.00 Aligned_cols=56 Identities=27% Similarity=0.356 Sum_probs=51.8
Q ss_pred CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 332 ~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERR 86 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCS-SSSCCSEEEEEESSH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECC-CCCEeeEEEEEECCH
Confidence 35567899999999999999999999999 999999999998 999999999999874
No 276
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.1e-10 Score=96.48 Aligned_cols=55 Identities=15% Similarity=0.440 Sum_probs=50.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++ +|.++|||||+|.+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDS-SGTSRGVGFARMEST 76 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECS-SSCEEEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcceEEEEEECCH
Confidence 3456899999999999999999999999 999999999997 899999999999864
No 277
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=9e-11 Score=95.27 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=50.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+.+ +|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~--~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMME--GGRSKGFGFVCFSSP 65 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEEC--SSSEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC--CCCcCEEEEEEECCH
Confidence 4467899999999999999999999999 99999999998 899999999999864
No 278
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=98.74 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=52.5
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++.+|.++|||||+|.++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 115 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELA 115 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCH
Confidence 4567899999999999999999999999 9999999999999999999999999874
No 279
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.11 E-value=5e-11 Score=100.02 Aligned_cols=54 Identities=24% Similarity=0.473 Sum_probs=51.0
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 88 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSGHPKGYAYIEFAER 88 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTSSCEEEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcccEEEEEECCH
Confidence 45899999999999999999999999 9999999999999999999999999864
No 280
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.11 E-value=7.4e-11 Score=98.73 Aligned_cols=54 Identities=19% Similarity=0.421 Sum_probs=50.3
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++|||+|||+++++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDR-TSKSRGFAFITFENP 58 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECST-TTTCCCEEEEECSSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcccEEEEEECCH
Confidence 356899999999999999999999999 999999999997 999999999999864
No 281
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.11 E-value=1.2e-10 Score=92.34 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=49.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++ +|.++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~--~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKME--NGKSKGCGVVKFESP 58 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEES--SSCEEEEEEEEESSH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcc--CCCcceEEEEEECCH
Confidence 3467899999999999999999999999 99999999985 789999999999864
No 282
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=7.5e-11 Score=97.99 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=44.8
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+..+|||+|||+++|+++|+++|+.| |.|.+|+|+++ ||||||+|.++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kGfaFVeF~~~ 62 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTE 62 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETT------TTEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCH
Confidence 356899999999999999999999999 99999999875 79999999864
No 283
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.11 E-value=7.4e-11 Score=99.23 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.++.+|.++|||||+|.+.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 74 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETY 74 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCH
Confidence 3456899999999999999999999999 9999999999999999999999999874
No 284
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.10 E-value=1.3e-10 Score=115.41 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=63.2
Q ss_pred CCCcccEEEEeC--CCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 221 EGKLLRTIFVGN--LPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 221 ~~~~~rtVFVgN--Lp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
...++++||||| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~ 70 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESK 70 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHH
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHH
Confidence 355689999999 588999999999999999999887621 3489999999999999
Q ss_pred HHH-HhcCcee---CCe--EEEEeec
Q 016231 299 AAL-AFNMAVI---GGN--HIRLDRA 318 (393)
Q Consensus 299 ~Al-~lng~~~---~Gr--~I~V~~a 318 (393)
+|+ .|||..+ .|+ .|.|.++
T Consensus 71 ~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 71 RAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp HHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred HHHHHhCCCccccccCCceEEEEEEe
Confidence 999 7999987 355 5777766
No 285
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.10 E-value=6.1e-11 Score=101.44 Aligned_cols=56 Identities=23% Similarity=0.495 Sum_probs=52.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....++|||+|||+++++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 94 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETRQSRGYGFVKFQSG 94 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTTEEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4456899999999999999999999999 9999999999999999999999999864
No 286
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.10 E-value=4.9e-11 Score=100.14 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCC---eEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~---I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....+|||+|||+++|+++|+++|..| |. |..|+|++++. |.++|||||+|.++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~ 71 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC----TIHDGVAGVHFIYTRE-GRQSGEAFVELESE 71 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS----CBTTGGGGEEEEECSS-SCEEEEEEEEBSSH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCccCceeEEEEECCC-CCCCeEEEEEECCH
Confidence 456899999999999999999999999 77 89999999976 99999999999874
No 287
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.10 E-value=6.1e-11 Score=92.36 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred ceeeeCCCCCCC------CHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~------teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
++|||+|||+.+ ++++|+++|+.| |.|..|+|+ +.+|.++|||||+|.+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~--~~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYP--EEDGKTKGYIFLEYASP 57 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECC--CBTTBCCCEEEEEESSH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEec--CCCCcEeEEEEEEECCH
Confidence 689999999999 779999999999 999999998 35899999999999864
No 288
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.1e-11 Score=99.13 Aligned_cols=54 Identities=30% Similarity=0.458 Sum_probs=49.2
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC---CCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t---g~~kGfaFVeF~t~ 392 (393)
...++|||+|||+++++++|+++|+.| |.|. +.++.+..+ |.++|||||+|.++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~ 62 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRF----GPLV-VDWPHKAESKSYFPPKGYAFLLFQEE 62 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTT----CCCC-EECTTSSSSCCCSCTTSEEEECCSSH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEE-EEEeecCCCCCCCCcccEEEEEECCH
Confidence 346899999999999999999999999 9999 999998877 79999999999874
No 289
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.10 E-value=4.8e-11 Score=93.61 Aligned_cols=53 Identities=23% Similarity=0.400 Sum_probs=49.2
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC-CccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV-GKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~-~kGfaFVeF~t~ 392 (393)
.++|||+|||+++++++|+++|+.| |.|..|+|+.+..++. ++|||||+|.+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~~~~g~afV~f~~~ 57 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPHLSKGYAYVEFENP 57 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEEEECSEEEEEESSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCCCCCcEEEEEEecH
Confidence 4799999999999999999999999 9999999999987776 899999999874
No 290
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=7.8e-11 Score=97.23 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=51.5
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeE--------EEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~--------~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|. .|+|+.++.+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 75 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 75 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence 3456899999999999999999999999 8999 699999999999999999999874
No 291
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.09 E-value=3.2e-11 Score=96.23 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=50.1
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+..+|||+|||+.+++++|+++|..| |.|..+.++.++.+|.++|||||+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTS----CBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 346899999999999999999999999 9999999999999999999999999864
No 292
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=95.83 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=50.5
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++ +|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDK-DGKSRGIGTVTFEQS 66 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TCSEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCeeeEEEEEECCH
Confidence 3457899999999999999999999999 999999999997 699999999999874
No 293
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.08 E-value=4.5e-11 Score=98.34 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=49.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCC---eEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~---I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+++|+++|+++|..| |. |..|+|++++. |.++|||||+|.+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~ 65 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDC----RIRNGENGIHFLLNRD-GKRRGDALIEMESE 65 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTS----CBTTTTTTEECCCCTT-STTCSEEEEEBSSH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhc----CCcCCcceEEEEECCC-CCEeeEEEEEECCH
Confidence 3456899999999999999999999998 66 89999999987 99999999999864
No 294
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.08 E-value=1.3e-10 Score=99.48 Aligned_cols=53 Identities=30% Similarity=0.463 Sum_probs=48.0
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeE--EEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--AVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~--~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....+|||+|||+++|+++|+++|+.| + |. .|+|++|+. |.++|||||+|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~----~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~ 94 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL----E-IVPNGITLPVDPE-GKITGEAFVQFASQ 94 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEECCCCSS-SSSCSEEEEEESST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----C-ceeeEEEEEECCC-CCCceEEEEEECCH
Confidence 456789999999999999999999999 4 55 999999986 99999999999875
No 295
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=6.7e-11 Score=99.72 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=49.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+++|+++|+++|..| |.|..+.++.+..+|.++|||||+|.+.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~~~~~~~~~g~~~G~afV~F~~~ 77 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKL----DIVEDSIYIAYGPNGKATGEGFVEFRNE 77 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSS----CBCTTTCEEEECTTSSEEEEEEEEBSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEECCCCCCCeEEEEEECCH
Confidence 4456899999999999999999999999 8998877777778999999999999874
No 296
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.07 E-value=1.6e-10 Score=100.89 Aligned_cols=56 Identities=25% Similarity=0.465 Sum_probs=52.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.++.++|||||+|.+.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~ 91 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKKTACGFCFVEYYSR 91 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCH
Confidence 3467899999999999999999999999 9999999999999999999999999874
No 297
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.07 E-value=9.2e-11 Score=100.95 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=48.9
Q ss_pred ceeeeCCC----CCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 337 KTVFVGNL----PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 337 ~tLfVgNL----p~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..|||+|| |+.+++.+|+++|+.| |.|.+|.++.||.||.++|||||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCceeeEEEEEECC
Confidence 58999999 9999999999999999 999999999999999999999999985
No 298
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=97.35 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=48.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+++++++|+++|+.| .|..|+|++|+. |+++|||||+|.++
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-----~v~~v~i~~d~~-g~~~G~afV~F~~~ 66 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHV-GRNNGNGLVKFLSP 66 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-----CCCEEEECCCTT-CCCCSEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-----CeeEEEEEECCC-CCCCeEEEEEECCH
Confidence 3345799999999999999999999998 488999999975 99999999999874
No 299
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.5e-10 Score=98.32 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=46.3
Q ss_pred CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 332 ~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...+.++|||+|||+++++++|+++|+.| |.|..|+|+++ +|||||+|.+.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kG~AFVeF~~~ 77 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTE 77 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEGG------GTEEEEECSCH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCC------CCEEEEEECCH
Confidence 35567899999999999999999999999 99999999876 79999999874
No 300
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=6.6e-11 Score=95.11 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=51.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+.+++++|+++|..| |.|..+.++.++.+|.++|||||+|.++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTS----CCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccceEEEEECCCCCeeeEEEEEECCH
Confidence 3456899999999999999999999999 8999999999999999999999999864
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.07 E-value=1.3e-10 Score=108.82 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=50.1
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCC--CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G--~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+.+|+++|+++|..| | .|..|+|++|+.+|.++|||||+|.+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~ 122 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSE 122 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTCCEEEEEEEEESCT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCCccceEEEEEECCH
Confidence 35789999999999999999999999 9 999999999999999999999999875
No 302
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.06 E-value=1.8e-10 Score=94.83 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=45.8
Q ss_pred CcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 332 ~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++++|||+|||+++|+++|+++|++| |.|.+|+|++ .||||||+|.+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~AFVef~~~ 67 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMP------KKRQALVEFEDV 67 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEET------TTTEEEEEESSH
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEc------CCCEEEEEECCH
Confidence 35578899999999999999999999999 9999999985 379999999863
No 303
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.4e-10 Score=91.83 Aligned_cols=54 Identities=26% Similarity=0.509 Sum_probs=48.7
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|++++. .++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~--~~~g~afV~f~~~ 65 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNER--GSKGFGFVTFENS 65 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTT--TTCCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCC--CCcEEEEEEECCH
Confidence 4457899999999999999999999999 9999999999864 3899999999864
No 304
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=7.7e-11 Score=100.39 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=48.0
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...+|||+|||+++|+++|+++|..|+...|.|..|+|+.+ .+|+++|||||+|.++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~ 78 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACE 78 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCH
Confidence 45799999999999999999999999211123479999999 5899999999999874
No 305
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.1e-10 Score=94.30 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=45.5
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++ +|||||+|.+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~------kg~aFVef~~~ 61 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKG------KNQAFLELATE 61 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETT------TTEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECC------CCEEEEEECCH
Confidence 4567899999999999999999999999 99999999865 89999999864
No 306
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.3e-10 Score=92.82 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=48.4
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++.. .++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~--~~~g~afV~f~~~ 65 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHT--SNDPYCFVEFYEH 65 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCC--SSCCEEEEEESSH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCC--CCCCEEEEEECCH
Confidence 4467899999999999999999999999 9999999999954 3799999999864
No 307
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=2.2e-10 Score=90.92 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=48.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+++++++|+++|+.| .|..|+|+++ .+|.++|||||+|.+.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~-~~g~~~g~afV~f~~~ 60 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRN-AHGNKTGYIFVDFSNE 60 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEEC-TTSCEEEEEEEECSSH
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEEC-CCCCCceEEEEEECCH
Confidence 3456899999999999999999999998 4889999999 7899999999999874
No 308
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=9.1e-11 Score=92.67 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=45.1
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||+++++++|+++|+.| |.|..|+|+++ ++|||||+|.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~ 52 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKP-----FRAFAFVTFADD 52 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSS-----CCSCCEEECSCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecC-----CCCEEEEEECCH
Confidence 46899999999999999999999999 99999999876 689999999874
No 309
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.04 E-value=2.8e-10 Score=93.22 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred CcceeeeCCCCCCC------CHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~------teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+.+ ++++|+++|+.| |.|..|+|+ ..+|.++|||||+|.+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~--~~~g~~~G~afV~f~~~ 71 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYP--EEDGKTKGYIFLEYASP 71 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECC--CBTTBSCCEEEEEECSS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEee--CCCCCeeeEEEEEECCH
Confidence 46799999999999 789999999999 999999998 36899999999999875
No 310
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=4.6e-10 Score=92.67 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=45.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++ ||||||+|.+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~------kg~aFVef~~~ 61 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPF------KRQALVEFENI 61 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETT------TTEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECC------CCEEEEEECCH
Confidence 4567899999999999999999999999 99999999764 79999999863
No 311
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=3.6e-10 Score=90.98 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHH----HHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~----e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+.+++++|+ ++|+.| |.|..|+|++++.+ +|||||+|.++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~---rg~afV~f~~~ 62 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDY---QLKAVVQMENL 62 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCST---TCCEEEEESSH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC---CeEEEEEECCH
Confidence 4456899999999999999999 999999 99999999999765 89999999864
No 312
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.00 E-value=1.8e-10 Score=95.01 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=45.1
Q ss_pred cCCcceeeeCCCCC-CCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~-~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+ .+++++|+++|+.| |.|.+|+|+++ +|||||+|.++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~------kg~aFVef~~~ 62 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNK------INEAFIEMATT 62 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSS------SSCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCH
Confidence 34678999999999 99999999999999 99999999865 58999999864
No 313
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.99 E-value=1e-09 Score=92.23 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=63.2
Q ss_pred CcccEEEEeCCCcc----------CCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 223 KLLRTIFVGNLPLK----------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 223 ~~~rtVFVgNLp~~----------~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
.+++.|.|.||=.- -.+++|+..|++||.|.+|.|+++. .+|||||.|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~ 63 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCP 63 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECS
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEEC
Confidence 35788999998321 1256899999999999999984321 3489999999
Q ss_pred CHHHHHHHH-HhcCceeCCeEEEEeecC
Q 016231 293 SEQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 293 s~e~A~~Al-~lng~~~~Gr~I~V~~a~ 319 (393)
+.++|..|+ .|||..|.||.|.|.++.
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 999999999 799999999999999985
No 314
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=4.4e-10 Score=92.78 Aligned_cols=54 Identities=28% Similarity=0.527 Sum_probs=48.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....++|||+|||.++++++|+++|+.| |.|..|+|+++. +.++|||||+|.+.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~--~~~kg~afV~f~~~ 79 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNE--RGSKGFGFVTFENS 79 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBT--TBCTTEEEEECCCS
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECC--CCCceEEEEEECCH
Confidence 4467899999999999999999999999 999999999985 45899999999874
No 315
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.99 E-value=3.2e-10 Score=103.36 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=65.7
Q ss_pred CHHHHHHHHH-h--cCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE
Q 016231 293 SEQSTEAALA-F--NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (393)
Q Consensus 293 s~e~A~~Al~-l--ng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~ 369 (393)
+...+..|+. . ....+.+....|.+...................++|||+|||+++++++|+++|+.| |.|..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~ 138 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLN 138 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS----CCEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC----CCEEE
Confidence 4566777774 4 344566655566554211000000000001235799999999999999999999999 99999
Q ss_pred EEEeecCCCCCCccEEEEEeeec
Q 016231 370 VRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 370 VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
|+|+++. +|.++|||||+|.++
T Consensus 139 v~i~~~~-~~~~kG~aFVeF~~~ 160 (193)
T 2voo_A 139 IQMRRTL-HKAFKGSIFVVFDSI 160 (193)
T ss_dssp EEEEECT-TCCEEEEEEEEESSH
T ss_pred EEEEECC-CCCcccEEEEEECCH
Confidence 9999996 599999999999874
No 316
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.98 E-value=5.6e-10 Score=92.30 Aligned_cols=52 Identities=25% Similarity=0.652 Sum_probs=46.9
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|+++ +.++|||||+|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~---~~~~g~afV~f~~~ 57 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNT---PETRGTAYVVYEDI 57 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECS---TTTTTCEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC---CCCCcEEEEEECCH
Confidence 456899999999999999999999999 99999999976 45699999999864
No 317
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=7.7e-10 Score=90.73 Aligned_cols=53 Identities=25% Similarity=0.484 Sum_probs=47.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| |.|..|+|+.+ +.++|||||+|.+.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~---~~~~g~afV~f~~~ 71 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNR---RGGPPFAFVEFEDP 71 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCS---SSSSCCEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEC---CCCCcEEEEEECCH
Confidence 3456899999999999999999999999 99999999655 55899999999874
No 318
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.51 E-value=6.3e-11 Score=98.52 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEE--------EEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~--------VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+.+++++|+++|+.| |.|.. |+|++++.+|.++|||||+|.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP 67 (116)
Confidence 356899999999999999999999999 99999 99999999999999999999874
No 319
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=4.5e-09 Score=86.30 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=59.7
Q ss_pred ccEEEEeCCC-------ccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHH
Q 016231 225 LRTIFVGNLP-------LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (393)
Q Consensus 225 ~rtVFVgNLp-------~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A 297 (393)
..+|.|.-.+ ..+++++|+.+|++||.|..|+|+. .++|||||+|.+.++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A 67 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAA 67 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHH
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHH
Confidence 4556665543 4689999999999999999999841 1569999999999999
Q ss_pred HHHHHhcCceeCCeEEEEeecCCC
Q 016231 298 EAALAFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 298 ~~Al~lng~~~~Gr~I~V~~a~~~ 321 (393)
..||.. +..+.|+.|.|.++.++
T Consensus 68 ~~Ai~~-~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 68 ELAVQN-EVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp HHHHHT-CCBCSSSBCEEECSSCC
T ss_pred HHHHHh-cCCCCCCeEEEEEccCC
Confidence 999953 34468999999998754
No 320
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=84.38 Aligned_cols=50 Identities=20% Similarity=0.448 Sum_probs=45.2
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++ +|||||+|.+.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~------kg~afV~f~~~ 58 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQR------QQCAFIQFATR 58 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGG------GTEEEEEESSH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECC------CCEEEEEECCH
Confidence 4456899999999999999999999999 99999999864 79999999874
No 321
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.93 E-value=9e-11 Score=94.95 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+++++++|+++|..| |.|.. .++.+..+|.++|||||+|.+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~-~~~~~~~~g~~~g~afV~f~~~ 68 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKND-LAVVDVRTGTNRKFGYVDFESA 68 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH----HHHHT-CCCCEEEEETTTTEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcce-EEEecCCCCCcCcEEEEEECCH
Confidence 356899999999999999999999999 88888 7778878899999999999864
No 322
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=5.4e-10 Score=92.43 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=48.7
Q ss_pred CCcceeeeCCCCCCCCHHHHH---HHhhcCCCCCCCeEEEEEeecCCCC---CCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPHMR---VGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~---e~F~~~~~~~G~I~~VrI~~d~~tg---~~kGfaFVeF~t~ 392 (393)
...++|||+|||+++++++|+ ++|..| |.|..|+|+++..++ .++|||||+|.++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~ 73 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCCSSSCCCEEEEEEESSH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcCccCCCCeEEEEEECcH
Confidence 346799999999999999999 999999 999999999997654 5669999999864
No 323
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=8.4e-10 Score=89.16 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=46.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.| +|+.+ .+|.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v---~~~~~-~~g~~~g~afV~f~~~ 63 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA----TFI---KVPQN-QNGKSKGYAFIEFASF 63 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC----SEE---ECCBC-SSSCBCSEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CEE---EEEEC-CCCCEeeEEEEEECCH
Confidence 4467899999999999999999999999 866 67777 6899999999999864
No 324
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=1.7e-09 Score=88.85 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=44.6
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.....+|||+|||+++++++|+++|..| |.|..|+|+.+ |||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~-------g~afV~f~~~ 60 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRK 60 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETT-------TEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecC-------CEEEEEECCH
Confidence 3456899999999999999999999999 99999999877 8999999874
No 325
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=85.31 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=43.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|+.| |.|..|+|+ +|||||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~--------~g~afV~f~~~ 52 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDII--------KNYGFVHIEDK 52 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEE--------TTEEEEEESSH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEE--------CCEEEEEECCH
Confidence 3467899999999999999999999999 999999997 68999999874
No 326
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=87.98 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=47.4
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| + .|+++.++.++.++|||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~---~~~~~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS----V---RARIVTDRETGSSKGFGFVDFNSE 64 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC----S---EEEEEECSSSCSEEEEEEEECSSH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC----e---EEEEEecCCCCCcCcEEEEEECCH
Confidence 4567899999999999999999999987 3 688889988999999999999864
No 327
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=5.7e-10 Score=93.66 Aligned_cols=50 Identities=20% Similarity=0.388 Sum_probs=44.8
Q ss_pred cCCcceeeeCCCCCC-CCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~-~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||++ +++++|+++|+.| |.|..|+|++ ++|||||+|.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~aFVef~~~ 72 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMR------MKSQAFIEMETR 72 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEET------TTTEEEEECSSH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEec------CCCEEEEEECCH
Confidence 446789999999998 9999999999999 9999999974 489999999863
No 328
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=3.1e-10 Score=93.76 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=45.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|.+..+..+|.++|||||+|.+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF----QEKKGPPIQFRMMTGRMRGQAFITFPNK 77 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH----HHSSSSCCEEEEECSSSCSEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCccceEEEEEcCCCccceEEEEEECCH
Confidence 3467899999999999999999999999 8884433333333788999999999863
No 329
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.90 E-value=1.4e-09 Score=89.49 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=51.2
Q ss_pred CCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCC-CCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEE
Q 016231 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYV 387 (393)
Q Consensus 309 ~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~-~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFV 387 (393)
.|..|.|..+..... .......++|||+|||+. +++++|+++|..| |.|..|.| ++|||||
T Consensus 6 ~g~~~~~~~s~~~~~------~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i--------~~g~afV 67 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK------NDPKSINSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV--------HKGYAFV 67 (110)
T ss_dssp CSCCCCCCCCCSCCS------CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE--------ETTEEEE
T ss_pred CCcccccccCCCCCC------CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE--------eCCEEEE
Confidence 456666665543221 112334589999999999 9999999999999 99999999 5899999
Q ss_pred Eeeec
Q 016231 388 LFKTR 392 (393)
Q Consensus 388 eF~t~ 392 (393)
+|.+.
T Consensus 68 ~f~~~ 72 (110)
T 1wf1_A 68 QYSNE 72 (110)
T ss_dssp ECSSS
T ss_pred EECCH
Confidence 99874
No 330
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.90 E-value=1.2e-09 Score=98.27 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=50.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+..+|||+|||+.+++++|+++|+.| |.|..|.|+.++ +|.++|||||+|.+.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~-~g~~kG~afV~F~~~ 139 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERR 139 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCT-TSSCSCCEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCEeeEEEEEeCCH
Confidence 3456899999999999999999999999 999999999997 899999999999864
No 331
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=92.86 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=45.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHH----HHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~----e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+..+|||+|||+.+++++|+ ++|+.| |.|..|.+.+ +|.++|||||+|.+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~---~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDL---SDDNSGKAYIVFATQ 82 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECC---CCSSCCCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEecc---CCCcCCEEEEEECCH
Confidence 4457899999999999999876 799999 9999998854 578999999999863
No 332
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.89 E-value=4.9e-10 Score=89.65 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=46.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHH----HHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~----e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+ ++|+.| |.|..|+|++ +|.++|||||+|.+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~---~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSR---SLKMRGQAFVIFKEV 61 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCH---HHHHTTCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEc---CCCcCcEEEEEeCCH
Confidence 3467899999999999999999 999999 9999999974 477899999999864
No 333
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=1.7e-09 Score=86.85 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=44.7
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++ +|||||+|.+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~------~g~afV~f~~~ 63 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKG------DSFAYIQYESL 63 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSS------SCCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCC------CCEEEEEECCH
Confidence 3456899999999999999999999999 99999999754 78999999864
No 334
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=88.16 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=43.8
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+|||+|||+++++++|+++|+.| |.|..|+|+++ ++|||||+|.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~ 47 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARN-----PPGFAFVEFEDP 47 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESS-----SSSEEEEECSSH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC-----CCCEEEEEECCH
Confidence 379999999999999999999999 99999999987 789999999874
No 335
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.87 E-value=2e-09 Score=86.69 Aligned_cols=50 Identities=32% Similarity=0.632 Sum_probs=45.1
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++ +|||||+|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~~------kg~afV~f~~~ 61 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHKD------KGFGFIRLETR 61 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEETT------TTEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEecC------CCEEEEEECCH
Confidence 4567899999999999999999999999 99999999854 79999999874
No 336
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.87 E-value=1.5e-09 Score=87.48 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=43.8
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+..|||+||++.+|+++|+++|.+| |.|.+++|+. ++|||||+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~------~kGfaFVey~~~ 53 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYL------NQGIALCKYTTR 53 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEET------TTTEEEEEESSH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcC------CCcEEEEEECCH
Confidence 35789999999999999999999999 9999999965 699999999874
No 337
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.7e-09 Score=86.13 Aligned_cols=48 Identities=19% Similarity=0.422 Sum_probs=43.6
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||.++++++|+++|..| |.|..|+|+ .++|||||+|.+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~------~~~g~afV~f~~~ 73 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHY------PEKGCCFIKYDTH 73 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEE------TTTTEEEEECSSH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEe------cCCCEEEEEECCH
Confidence 45799999999999999999999999 999999997 3589999999863
No 338
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.4e-09 Score=87.92 Aligned_cols=49 Identities=27% Similarity=0.469 Sum_probs=44.8
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++|||+|||+.+++++|+++|..| |.|..|+|+++ +|||||+|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~------~g~afV~f~~~ 71 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPE------KGYSFVRFSTH 71 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETT------TTEEEEEESSH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCC------CCEEEEEECCH
Confidence 346899999999999999999999999 99999999876 79999999874
No 339
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.9e-09 Score=84.76 Aligned_cols=48 Identities=21% Similarity=0.606 Sum_probs=42.5
Q ss_pred cCCcceeeeCCCCC-CCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~-~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+ .+++++|+++|+.| |.|..|+|. +|||||+|.+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~--------~g~afV~f~~~ 55 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNP 55 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE--------TTEEEEEESCH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCH
Confidence 44678999999999 99999999999999 999999994 78999999874
No 340
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.81 E-value=5.6e-09 Score=84.34 Aligned_cols=48 Identities=21% Similarity=0.641 Sum_probs=43.4
Q ss_pred cCCcceeeeCCCCC-CCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~-~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+ .+++++|+++|+.| |.|..|+|. +|||||+|.+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~--------~g~afV~f~~~ 67 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNP 67 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEEC--------SSEEEEEESSH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCH
Confidence 44678999999998 99999999999999 999999993 79999999864
No 341
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.81 E-value=4.6e-09 Score=86.70 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=43.8
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+ +|||||+|.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~--------kg~afV~f~~~ 75 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKIL--------NGFAFVEFEEA 75 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEE--------TTEEEEECSSH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEECCH
Confidence 4457899999999999999999999999 999999997 78999999863
No 342
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.80 E-value=5e-09 Score=85.06 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=43.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+++++++|+++|..| |.|..|+|+ +|||||+|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~--------~~~afV~f~~~ 55 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKL--------KDYAFIHFDER 55 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEEC--------SSCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEeCCH
Confidence 4567899999999999999999999999 999999986 56999999874
No 343
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4e-09 Score=84.75 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=44.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....++|||+|||+.+++++|+++|..| |.|. ++++.+ .++|||||+|.+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----G~v~-~~~~~~----~~~g~afV~f~~~ 66 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALREL----GSVP-LRLTWQ----GPRRRAFLHYPDS 66 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHT----TCCC-SEEEEE----TTTTEEEEECSSH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhc----CCEE-EEEEcC----CCCcEEEEEECCH
Confidence 3346899999999999999999999999 8887 777754 5799999999864
No 344
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=9e-09 Score=82.16 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=42.9
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+++++++|+++|..| |.|..| +.++.+|. ||||+|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v--~~~~~~g~---~afV~f~~~ 55 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASV--VMDKDKGV---FAIVEMGDV 55 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEE--EECSSSCC---EEEEEESSH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEE--EEcCCCCc---EEEEEECCH
Confidence 45799999999999999999999999 999987 66666665 999999874
No 345
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.79 E-value=2.5e-09 Score=89.38 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=44.3
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCC-CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G-~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...+|||+|||+++++++|+++|..| | .|..|.|+.+ .++|||||+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~----~~rGfaFV~F~~~ 77 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTR----DFDGTGALEFPSE 77 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSC----SSSCCEEEEESSH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcC----CCCCEEEEEECCH
Confidence 35799999999999999999999999 8 8999998643 4799999999864
No 346
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=3.6e-09 Score=87.70 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=43.3
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+.+++++|+++|..| |.|..|+|+. ++|||||+|.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~------~~g~afV~f~~~ 56 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPE------GGITAIVEFLEP 56 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCS------SSSCEEEEESCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeC------CCCEEEEEeCCH
Confidence 35799999999999999999999999 9999999874 578999999864
No 347
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.79 E-value=1.6e-09 Score=86.57 Aligned_cols=51 Identities=27% Similarity=0.514 Sum_probs=44.3
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..| |.|..+ ..+|.++|||||+|.+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKSKGIAYIEFKSE 63 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCE-----EETTEEEEEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEe-----CCCCCcceEEEEEECCH
Confidence 4467899999999999999999999999 877665 35788999999999864
No 348
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.77 E-value=7.1e-10 Score=95.42 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=44.7
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEE--------EEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV--------RVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~V--------rI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+..+|||+|||+.+|+++|+.+|..| |.|..| ++. .+|.++|||||+|.+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~ 102 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY----VDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNE 102 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG----CCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcccccccceeeEEec---cCCCcccEEEEEeCCH
Confidence 3456899999999999999999999999 888764 333 4688999999999863
No 349
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=1.6e-08 Score=81.39 Aligned_cols=50 Identities=30% Similarity=0.462 Sum_probs=43.5
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|..|+. |.|..|+++ +|||||+|.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~--------~g~afV~f~~~ 61 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKI--------RDYAFVHFSNR 61 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEEC--------SSEEEEEESSH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEe--------CCeEEEEeCCH
Confidence 456789999999999999999999999853 789988874 67999999864
No 350
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.76 E-value=3.8e-09 Score=87.97 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=42.2
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...+|||+|||+++++++|+++|..| |.|..|.|+.+ |||||+|.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~-------g~afV~f~~~ 61 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRK 61 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTT-------SEEEEEESSH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecC-------CEEEEEECCH
Confidence 45799999999999999999999999 99999999876 8999999873
No 351
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=4.3e-09 Score=88.58 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=44.0
Q ss_pred cCCcceeee--CCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFV--GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfV--gNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++++||| +||++++++++|+++|+.| |.|..|.|+. .||||||+|.++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~------~rgfaFV~f~~~ 73 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTT 73 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCT------TCSCEEEEESSH
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCH
Confidence 446789999 7799999999999999999 9999998864 379999999874
No 352
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1e-08 Score=81.36 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=43.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+ +|||||+|.+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~--------~~~afV~f~~~ 54 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIV--------KDYAFVHMERA 54 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEEC--------SSEEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEE--------CCEEEEEECCH
Confidence 4467899999999999999999999999 999999996 44999999874
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.73 E-value=7.6e-09 Score=80.81 Aligned_cols=52 Identities=27% Similarity=0.572 Sum_probs=43.6
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCC-------CeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-------SVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G-------~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.++|||+|||+++++++|+++|..|+...| .|..|+++++ +|||||+|.++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~ 63 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSV 63 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCH
Confidence 4689999999999999999999999821114 7999999755 79999999874
No 354
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3.2e-08 Score=79.84 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=61.5
Q ss_pred CcccEEEEeCCCc----cCCH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCH
Q 016231 223 KLLRTIFVGNLPL----KVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE 294 (393)
Q Consensus 223 ~~~rtVFVgNLp~----~~te----e~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~ 294 (393)
++..||+|.-+|. ..-. .+|...|++||.|..+++.. +.+||+|.+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-------------------------d~~fVtF~d~ 59 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-------------------------DKMWVTFLEG 59 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-------------------------SSEEEEESSH
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-------------------------CCEEEEECCh
Confidence 4567899988762 3333 57899999999999999944 3489999999
Q ss_pred HHHHHHHHhcCceeCCeEEEEeecCC
Q 016231 295 QSTEAALAFNMAVIGGNHIRLDRACP 320 (393)
Q Consensus 295 e~A~~Al~lng~~~~Gr~I~V~~a~~ 320 (393)
++|.+||.|||..+.||.|+|..+++
T Consensus 60 ~sAlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 60 SSALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence 99999999999999999999999864
No 355
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.4e-08 Score=80.26 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=42.9
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+ +|||||+|.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~--------~~~afV~f~~~ 53 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVV--------KDYAFVHMEKE 53 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEC--------SSCEEEEESCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEE--------CCEEEEEECCH
Confidence 3456899999999999999999999999 999999997 44999999874
No 356
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=5.5e-09 Score=83.04 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=41.2
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCC-eEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~-I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.+.++|||+|||+++++++|+++|..| |. |..+.+. ++|||||+|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~vv~~~~~~-------~~g~afV~f~~~ 54 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR----KLPLAGQVLL-------KSGYAFVDYPDQ 54 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT----TCCCSSCEEE-------ETTEEEECCSCH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCceEEEEEc-------CCCEEEEEECCH
Confidence 456899999999999999999999999 88 6666662 489999999874
No 357
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=6.2e-08 Score=82.33 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=62.3
Q ss_pred cccEEEEeCCCcc-CCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCC-HHHHHHHH
Q 016231 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS-EQSTEAAL 301 (393)
Q Consensus 224 ~~rtVFVgNLp~~-~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s-~e~A~~Al 301 (393)
..+.|||+||++. ++.++|+.+|+.||.|..|.+.++. -.|||.|.+ ..+|..|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----------------------~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----------------------KEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----------------------SEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----------------------CEEEEEECCChHHHHHHH
Confidence 4688999999999 9999999999999999999985432 269999999 88899888
Q ss_pred -Hh--cCceeCCeEEEEeecC
Q 016231 302 -AF--NMAVIGGNHIRLDRAC 319 (393)
Q Consensus 302 -~l--ng~~~~Gr~I~V~~a~ 319 (393)
.+ ++..|.|..+.+....
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECC
T ss_pred HHhhcCCcEEeCcEEEEEECC
Confidence 67 4778899888887654
No 358
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.6e-08 Score=80.64 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=44.4
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEE-EeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~Vr-I~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++|||+|||+.+++++|+++|..| |.|..|+ |+.++.+| .|||+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~~----~afV~f~~~ 64 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSETA----VVNVTYSSK 64 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSSE----EEEEEESSH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCC----EEEEEECCH
Confidence 346899999999999999999999999 9999995 88886544 499999864
No 359
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.63 E-value=1.5e-08 Score=79.96 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=41.3
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||+|||+.+++++|+++|..| .|..|+|. .++|||||+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----~v~~~~i~------~~~g~afV~f~~~ 50 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-----DLKYCYVD------RNKRTAFVTLLNG 50 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-----CCCCEEEE------GGGTEEEECCSCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-----CeEEEEEe------CCCcEEEEEECCH
Confidence 35799999999999999999999998 47888884 5799999999864
No 360
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.62 E-value=4.2e-08 Score=87.62 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=44.2
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...+|||+||++.+|+++|+++|+.| |.|..|.|+.+. ++|||||+|.++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k~----~rgfAFVeF~d~ 94 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTKN----NQFQALLQYADP 94 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEESS----SCEEEEEEESCH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeCC----CCCEEEEEECCH
Confidence 34679999999999999999999999 999999997552 589999999864
No 361
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=8.5e-08 Score=76.84 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=42.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|| ++++++|+++|..| |.|..|.|. .++|||||+|.+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~------~~~g~afV~f~~~ 59 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKM 59 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEE------TTTTEEEEEESSH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEec------CCCCEEEEEECCH
Confidence 345689999996 89999999999999 999999994 4689999999863
No 362
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.57 E-value=6.2e-08 Score=83.31 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=43.4
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccE-EEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGf-aFVeF~t~ 392 (393)
....|||+||++.+|+++|+++|+.| |.|..|+|+.+ .+|| |||+|.+.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~~-----~~gfqAFVef~~~ 76 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK-----NNQFQALLQYADP 76 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEEE-----TTEEEEEEEESCH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEcC-----CCCcEEEEEECCH
Confidence 44688999999999999999999999 99999999875 3688 99999864
No 363
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.4e-07 Score=76.48 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=61.1
Q ss_pred CCcccEEEEeCCCcc-----CCH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeC
Q 016231 222 GKLLRTIFVGNLPLK-----VKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (393)
Q Consensus 222 ~~~~rtVFVgNLp~~-----~te----e~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~ 292 (393)
.++..||+|.-++.. +-. .+|.+.|..||.|..|+|..+ -+||+|.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------------------~~fVtF~ 66 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------------------QMLVTFA 66 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------------------EEEEECS
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------------------cEEEEEc
Confidence 345689999988743 222 468899999999999999542 3999999
Q ss_pred CHHHHHHHHHhcCceeCCeEEEEeecC
Q 016231 293 SEQSTEAALAFNMAVIGGNHIRLDRAC 319 (393)
Q Consensus 293 s~e~A~~Al~lng~~~~Gr~I~V~~a~ 319 (393)
+.++|.+||.|||..+.||.|+|..-.
T Consensus 67 d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 67 DSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp CSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred ChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 999999999999999999999998754
No 364
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.52 E-value=2.1e-07 Score=85.52 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=59.1
Q ss_pred CCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-HhcCceeCCeEEEE
Q 016231 237 VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL 315 (393)
Q Consensus 237 ~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~lng~~~~Gr~I~V 315 (393)
-.+++|...|++||.|.+|.|+++...+.. ++.++|++||+|.+.++|.+|+ .|||..|.||.|.|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~-------------~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEE-------------DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSST-------------TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCccc-------------CcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 356899999999999999999876532211 2347799999999999999999 79999999999999
Q ss_pred eecC
Q 016231 316 DRAC 319 (393)
Q Consensus 316 ~~a~ 319 (393)
.++.
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9874
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.50 E-value=1.6e-07 Score=77.35 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=46.5
Q ss_pred CCcceeeeCCCCC-----CCCHHHHHHHhhcCCCCCCCeEEEEEeecCCC-CCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPF-----DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~-----~~teedL~e~F~~~~~~~G~I~~VrI~~d~~t-g~~kGfaFVeF~t~ 392 (393)
.++++|+|+||.. +-++++|+++|+.| |.|..|.|++++.+ +.++|||||+|.+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~ 66 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPDDEAVRIFLEFERV 66 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCTTTSEEEEEEESSH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCCCCcEEEEEEECCH
Confidence 4678999999963 23789999999999 99999999998754 68999999999864
No 366
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.50 E-value=1.8e-07 Score=79.63 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=40.3
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccE-EEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGf-aFVeF~t~ 392 (393)
..|||+||++.+++++|+++|+.| |.|..|+|+.. .|| |||+|.+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~~------~Gf~aFVef~~~ 72 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFKR------NGIQAMVEFESV 72 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEES------SSEEEEEEESSH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC------CCCEEEEEECCH
Confidence 457899999999999999999999 99999999753 286 99999863
No 367
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.48 E-value=1.1e-07 Score=80.21 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=42.0
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+.++|||+|| ++++++|+++|+.| |.|..|+|+ .++|||||+|.+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~------~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKM 83 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEE------TTTTEEEEECSSH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEe------CCCCEEEEEECCH
Confidence 345789999996 69999999999999 999999995 4689999999863
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.44 E-value=1.1e-07 Score=89.95 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=44.7
Q ss_pred cCCcceeeeCCCCCCC---------CHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDV---------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~---------teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....++|||+||+..+ ++++|+.+|+.| |.|..|+|+. ++|||||+|.++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~------~kG~AFV~F~~~ 189 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVE------SKNCGFVKFKYQ 189 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEG------GGTEEEEEESSH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEEC------CCCEEEEEeCCH
Confidence 4457899999999998 799999999999 9999999985 389999999874
No 369
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=2.9e-07 Score=74.95 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=37.5
Q ss_pred CCcce-eeeCCCCCCCCHHH----HHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKT-VFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~t-LfVgNLp~~~teed----L~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
.++.| |||+|||+.+++++ |+++|..|+ |.|..| +| |||||.|.+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG---G~Vl~V-------tg---G~AfV~F~~~ 56 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG---GKVLSI-------TG---CSAILRFINQ 56 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT---CCEEEC-------CT---TCEEEEESSH
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC---CeeEEE-------ec---CEEEEEECCH
Confidence 34556 99999999999888 568999992 399988 34 9999999863
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.32 E-value=3.1e-07 Score=91.08 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=43.8
Q ss_pred cCCcceeeeCC--CCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGN--LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgN--Lp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++.+|||+| |++.+|+++|+++|+.| |.|.+|.|+. +||||||+|.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~------~kgfaFV~f~~~ 66 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTT 66 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCT------TCSEEEEEESSH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCH
Confidence 56788999999 57899999999999999 9999988853 489999999763
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=5.2e-06 Score=67.90 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 346 ~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..+++++|+++|++| |.|..|+|+ +.++|||||+|.++
T Consensus 27 ~~~te~~L~~~F~~~----G~V~~v~i~-----~~~rGfaFVeF~~~ 64 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY----GEVLNLVLS-----SKKPGTAVVEFATV 64 (100)
T ss_dssp CSCCHHHHHHHHHTT----SCEEEEEEE-----SSSSSEEEEEESCH
T ss_pred CCCCHHHHHHHHHhc----CCEEEEEEc-----cCCCCEEEEEECCH
Confidence 568999999999999 999999998 36899999999864
No 372
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.10 E-value=1.9e-06 Score=70.88 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=44.8
Q ss_pred CcceeeeCCC--CCCCC--------HHHHHHHhhcCCCCCCCeEEEEEeecCCC--CCCccEEEEEeeec
Q 016231 335 IKKTVFVGNL--PFDVK--------DEEIYQLFCGLNDLESSVEAVRVIRHPHM--RVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNL--p~~~t--------eedL~e~F~~~~~~~G~I~~VrI~~d~~t--g~~kGfaFVeF~t~ 392 (393)
|++.|+|.|+ |..+. .++|++.|+.| |.|.+|.|+++..+ +.++|||||+|.+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~ 69 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSV 69 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCH
Confidence 5789999998 44443 47899999999 99999999998754 36899999999874
No 373
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=1e-05 Score=67.30 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=64.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhccc-----CCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKF-----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~-----G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
.++|-+-|||-.++...|+.++..+ |.|..|.|+.+. |-|+|+|.+...|-+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----------------------~GAivef~d~~~AgK 77 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----------------------NGAIIIFRDSKFAAK 77 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----------------------TEEEEECSCHHHHHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----------------------CceEEEEccchhhHH
Confidence 5899999999999999999999999 999999885543 689999999999988
Q ss_pred HH-HhcCceeCCeEEEEeec
Q 016231 300 AL-AFNMAVIGGNHIRLDRA 318 (393)
Q Consensus 300 Al-~lng~~~~Gr~I~V~~a 318 (393)
|. .|+|..|.||.|+|...
T Consensus 78 asLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 78 MLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHSSEEETTEEEEEECH
T ss_pred HHhhcCCeeecCeEEEecCH
Confidence 86 99999999999999754
No 374
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.07 E-value=2.1e-06 Score=72.29 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=44.4
Q ss_pred CcceeeeCCCC--CCC---CHHHHHHHhhcCCCCCCCeEEEEEeecCC----CCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLP--FDV---KDEEIYQLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp--~~~---teedL~e~F~~~~~~~G~I~~VrI~~d~~----tg~~kGfaFVeF~t~ 392 (393)
++++|+|.|+- .++ -+++|++.|+.| |.|.+|.|++++. ++.++|||||+|.+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~ 81 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA 81 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCH
Confidence 57899999983 223 368999999999 9999999999864 456789999999864
No 375
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=3.3e-06 Score=69.54 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=41.5
Q ss_pred cCCcceeeeCCCCCCCC-----------HHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 333 YDIKKTVFVGNLPFDVK-----------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~~t-----------eedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++++|+|.||..... +++|+++|+.| |.|..|.| .+. .++|||||+|.++
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i-~~~---~~~G~afV~f~~~ 74 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLL-FDR---HPDGVASVSFRDP 74 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEE-ETT---CTTCEEEEECSCH
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEE-ecC---CCCEEEEEEECCH
Confidence 34678999999944432 58999999999 99999966 553 3799999999864
No 376
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.01 E-value=8.9e-07 Score=72.67 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=39.6
Q ss_pred eCCCCCCCCHHHHHHHh------------hcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 341 VGNLPFDVKDEEIYQLF------------CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 341 VgNLp~~~teedL~e~F------------~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+.|||+.+++++|+++| +.| |.|..|.|+++. +|.++|||||+|.++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~-~~~~~G~~fV~f~~~ 78 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNL-GDHLVGNVYVKFRRE 78 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSS-SSSSEEEEEEEESCH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCC-CCCccEEEEEEECCH
Confidence 66788888888777766 999 999999999985 488999999999864
No 377
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00011 Score=60.47 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=72.5
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcc-----cCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHH
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIK-----FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~-----~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~ 298 (393)
..++|.|.|||..+.++.|.-+|.. -|+|.+|.. .+ +-|+|+|.+...|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~-----------------------~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG-----------------------CGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET-----------------------TEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC-----------------------CcEEEEEcChHHHH
Confidence 3578999999999999999999986 267887776 11 36999999999999
Q ss_pred HHHHhcCceeCCeEEEEeecCCCcccCCCCCCCCcCCcceeeeCCCCCCCC
Q 016231 299 AALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVK 349 (393)
Q Consensus 299 ~Al~lng~~~~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~tLfVgNLp~~~t 349 (393)
..|+...+.|.|..|.|....+. ...+|++.||++.++
T Consensus 62 rVL~k~~H~L~~~~LsV~P~~~~-------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 62 RVLAQADHELHGAQLSLRPAPPR-------------APARLLLQGLPPGTS 99 (104)
T ss_dssp HHHTCSCCBSSSSBCEEEECCCC-------------CCCCCCCCSCCCCCC
T ss_pred HHhcCCcceecCeEEEEEcCCCC-------------CcceEeeecCCCCCC
Confidence 99987778889999999775432 347899999998875
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.5e-05 Score=67.64 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=44.6
Q ss_pred cCCcceeeeCCCCCC-CCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~-~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
..+...|||+||+.. ++.++|+++|+.| |.|.+|.|+++.. .|||.|.+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~------tgfVrf~~ 64 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAK------EGIILFKE 64 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCS------EEEEEESS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCC------EEEEEECC
Confidence 556789999999999 9999999999999 9999999998854 59999987
No 379
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.19 E-value=0.00033 Score=58.42 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=39.2
Q ss_pred CcceeeeCCCC--CCC--------CHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLP--FDV--------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp--~~~--------teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+++.|.|.||= ... .+++|++.|+.| |.|..|.|+++. ++|||||+|.+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~~----~~G~~fV~f~~~ 65 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKNS----AQGNVYVKCPSI 65 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTTC----TTCCEEEECSSH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecCC----CcEEEEEEECCH
Confidence 56789999872 221 146889999999 999999997763 599999999863
No 380
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.74 E-value=0.0044 Score=50.39 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=43.9
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
.+.++| ++|..+.-.||..+|+.||.|. |+++-+. .|||.|.+.+.|..||.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------------------------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------------------------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------------------------EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------------------------eEEEEecCHHHHHHHHH
Confidence 455666 9999999999999999999765 7775432 79999999999999985
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.51 E-value=0.011 Score=48.60 Aligned_cols=74 Identities=12% Similarity=0.049 Sum_probs=60.0
Q ss_pred ccEEEEeCCCccC-C----HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHH
Q 016231 225 LRTIFVGNLPLKV-K----KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (393)
Q Consensus 225 ~rtVFVgNLp~~~-t----ee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~ 299 (393)
..+|+|.||+..+ . .+.++.+|..|+++.+..+.. |-.-..|.|.+.++|..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-----------------------SFRRirv~F~~~~~A~~ 61 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-----------------------SFKRVRINFSNPLSAAD 61 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-----------------------TTTEEEEECSSTTHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-----------------------cceEEEEEeCChHHHHH
Confidence 5789999999876 2 357899999999987765521 11247999999999999
Q ss_pred HH-HhcCceeCCeEEEEeecCCC
Q 016231 300 AL-AFNMAVIGGNHIRLDRACPP 321 (393)
Q Consensus 300 Al-~lng~~~~Gr~I~V~~a~~~ 321 (393)
|- .||+..|+|+.|+|-++.+.
T Consensus 62 AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 62 ARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp HHHTSTTSEETTEECEEECCCCS
T ss_pred HHHHhccceecCceeEEEecCCC
Confidence 97 89999999999999998743
No 382
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.42 E-value=0.015 Score=46.69 Aligned_cols=69 Identities=22% Similarity=0.235 Sum_probs=51.3
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~ln 304 (393)
..|.|++||+.+|++++++.++.+..+....++.-. .+..+ ..-+-|||.|.+.+++.... .++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~--~s~~~-------------~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND--TSLYP-------------HMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC--CSSTT-------------CCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc--cCCCC-------------CcceEEEEEeCCHHHHHHHHHHhC
Confidence 468999999999999999999998876555543221 11111 23367999999999888877 689
Q ss_pred CceeC
Q 016231 305 MAVIG 309 (393)
Q Consensus 305 g~~~~ 309 (393)
|..|.
T Consensus 67 g~~F~ 71 (91)
T 1uw4_A 67 GYVFL 71 (91)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 88773
No 383
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.018 Score=48.38 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=58.3
Q ss_pred cccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 224 ~~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
..+.|-|-+.|+.. ...|..+|++||.|.+.... .+ ..+.+|.|.+..+|+.||..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~-----------------~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NT-----------------GNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SS-----------------SSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CC-----------------CCeEEEEeCCHHHHHHHHHh
Confidence 35789999999986 56677889999999887651 11 13899999999999999999
Q ss_pred cCceeCC-eEEEEeecC
Q 016231 304 NMAVIGG-NHIRLDRAC 319 (393)
Q Consensus 304 ng~~~~G-r~I~V~~a~ 319 (393)
||..|.| -.|-|.++.
T Consensus 79 NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 79 DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp TTCEETTTEECEEEECC
T ss_pred CCeEecCCEEEEEEECC
Confidence 9999985 667777764
No 384
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.90 E-value=0.0062 Score=49.60 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=42.3
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHH
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ 302 (393)
+.++| ++|..+.-.+|..+|+.||.|. |+++-+. .|||.|.+.+.|..||.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT------------------------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------------------------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT------------------------EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC------------------------eEEEEecCHHHHHHHHH
Confidence 34555 9999999999999999999544 7774432 79999999999999985
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.53 E-value=0.0092 Score=54.21 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=34.5
Q ss_pred CCHHHHHHHhhcCCCCCCCeEEEEEeecCC----CCCCccEEEEEeeec
Q 016231 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTR 392 (393)
Q Consensus 348 ~teedL~e~F~~~~~~~G~I~~VrI~~d~~----tg~~kGfaFVeF~t~ 392 (393)
-.+++|++.|..| |.|.+|.|+++.. +|.++||+||+|.+.
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~ 185 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA 185 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSH
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCH
Confidence 4578999999999 9999999996653 458999999999763
No 386
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.08 E-value=0.025 Score=45.31 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=35.3
Q ss_pred CcceeeeCCCC----CCCCH----HHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 335 IKKTVFVGNLP----FDVKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 335 ~~~tLfVgNLp----~~~te----edL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
+.-||+|.-++ .++-. .+|.+.|.+| |.|..++|+.+. |||+|.+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~--------~fVtF~d 58 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDK--------MWVTFLE 58 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSS--------EEEEESS
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCC--------EEEEECC
Confidence 45688888766 23444 6788999999 999999998873 8999975
No 387
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.60 E-value=0.015 Score=59.49 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=41.2
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~l 303 (393)
.|+|||. .|..+++.+|.++|++||+|.++.+-. +.+ -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~----~~g------------------~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE----SFG------------------LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC----SSS------------------EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc----cCC------------------eEEEEEeCCHHHHHHHHhc
Confidence 5889997 799999999999999999999988721 111 4999999999999988743
No 388
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.46 E-value=0.086 Score=44.98 Aligned_cols=89 Identities=19% Similarity=0.057 Sum_probs=56.1
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeeccc-CCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHHHhc
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII-DTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~-~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al~ln 304 (393)
..|.|=+.|..... .|..+|++||.|..-.-+..+.. .+...+ -.+++..-....+..|.|.+..+|..||..|
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~----~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQ----DRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC---------------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccc----cccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 45777788777654 56678999999865211000000 000000 0011111123468999999999999999999
Q ss_pred CceeCCeEEEEeecC
Q 016231 305 MAVIGGNHIRLDRAC 319 (393)
Q Consensus 305 g~~~~Gr~I~V~~a~ 319 (393)
|..|.|.-|-|.++.
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988888875
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.43 E-value=0.097 Score=42.38 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=46.7
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
+..|.|+.||+.+|++++.+.++.+-.+ .+.. +.....+.+ ...-.-|||.|.+.+++..-. .+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~---d~~~--fv~G~~s~~----------~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH---DYFE--FFAADLSLY----------PHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE---EECC--CCCCCSSSC----------CSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc---ceEE--EeCCccCCC----------CCcceEEEEEeCCHHHHHHHHHHc
Confidence 4579999999999999988777765443 2211 111111110 112257999999999988877 68
Q ss_pred cCceeC
Q 016231 304 NMAVIG 309 (393)
Q Consensus 304 ng~~~~ 309 (393)
+|..|.
T Consensus 74 ~g~~F~ 79 (97)
T 2l08_A 74 DGYIFL 79 (97)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 888773
No 390
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.25 E-value=0.057 Score=43.57 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=37.2
Q ss_pred cCCcceeeeCCCCCC-----CCH----HHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 333 YDIKKTVFVGNLPFD-----VKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 333 ~~~~~tLfVgNLp~~-----~te----edL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
-++.-||+|.-++.+ +-. .+|.+.|..| |.|..|||+.|. +||+|.+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d~--------~fVtF~d 67 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQGQ--------MLVTFAD 67 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETTE--------EEEECSC
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecCc--------EEEEEcC
Confidence 345679999988743 333 5688999999 999999999884 9999975
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.21 E-value=0.18 Score=40.32 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=41.0
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC--CccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV--GKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~--~kGfaFVeF~t~ 392 (393)
.+|.|++||+.+|++++.+.+..+ ..+.+.+++....+.. .-.-|||.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~ 55 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQ 55 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSS
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCH
Confidence 478999999999999999999998 6788888766543322 235789999763
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.83 E-value=0.63 Score=38.00 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=39.0
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCC-CCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLN-DLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~-~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
...+|.|.|||+.+.++.|.-.|+.-. +=.|.|..|.... +-|+|+|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d 56 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFRE 56 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcC
Confidence 457999999999999999999998721 1139999998753 358999976
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.08 E-value=0.48 Score=38.37 Aligned_cols=44 Identities=23% Similarity=0.478 Sum_probs=34.9
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
...++| ++|..|...||.++|+.| |.| .|+++-|- -|||.|.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~f----ggv-~I~WidDT-------sAlvvf~~~ 59 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAF----GNI-QISWIDDT-------SAFVSLSQP 59 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTT----CSC-CCEEEETT-------EEEEECSCH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhcc----CCE-EEEEEcCC-------eEEEEecCH
Confidence 456777 999999999999999999 533 56666662 599999764
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=88.92 E-value=0.71 Score=37.47 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=35.4
Q ss_pred ceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 337 ~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++| ++|..|...||.++|+.| |. ..|+++-|- -|||.|.++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f----gg-v~I~WidDT-------sAlvvf~~~ 49 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF----GN-IQISWIDDT-------SAFVSLSQP 49 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS----EE-EEEEEEETT-------EEEEEEEEE
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc----CC-EEEEEEcCC-------eEEEEecCH
Confidence 45677 999999999999999999 63 467777662 599999875
No 395
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.57 E-value=2.6 Score=43.42 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=43.0
Q ss_pred ccEEEEeCCCccCCHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCCHHHHHHHH-Hh
Q 016231 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (393)
Q Consensus 225 ~rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s~e~A~~Al-~l 303 (393)
...++|+ +|..+...+|..+|+.||.| .|+++.+ ..|||.|.+.+.|..++ .+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------------------------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------------------------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------------------------SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------------------------CeEEEEECCHHHHHHHHHHH
Confidence 4567776 88899999999999999964 4666332 27999999999999998 45
Q ss_pred c
Q 016231 304 N 304 (393)
Q Consensus 304 n 304 (393)
+
T Consensus 494 ~ 494 (507)
T 3d45_A 494 K 494 (507)
T ss_dssp T
T ss_pred H
Confidence 3
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=82.21 E-value=0.73 Score=47.10 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=37.2
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
..++|||. .|..+++.+|.+.|++| |.|.++.+..+. | -||.|+|.+.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~~--g---~~~~vef~~~ 99 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYESF--G---LYAVVEFCQK 99 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECSS--S---EEEEEECC--
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEccC--C---eEEEEEeCCH
Confidence 35899997 79999999999999999 999999887652 2 6999999874
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=79.38 E-value=0.96 Score=36.48 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=36.1
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCC--CccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV--GKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~--~kGfaFVeF~t~ 392 (393)
.+.+|.|+.||+.+|++++.+.+..+ =.+.+.+++....+-. .-.-|||.|.+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~ 63 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPL----PAHDYFEFFAADLSLYPHLYSRAYINFRNP 63 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCC----SSEEECCCCCCCSSSCCSCCCCCEEEESCH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCc----CccceEEEeCCccCCCCCcceEEEEEeCCH
Confidence 45689999999999999999888876 2355544433222111 124578888763
No 398
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=75.26 E-value=4.7 Score=33.39 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHhhcCC-CCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLN-DLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 334 ~~~~tLfVgNLp~~~teedL~e~F~~~~-~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
+..++|-|=|||..+++..|+.+++.+. ...|.|..|.++.|- |=|+|+|.+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~ 72 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDS 72 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccc
Confidence 3468999999999999999999999872 124789999998883 3489999863
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=26.84 E-value=75 Score=26.23 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=36.8
Q ss_pred CcceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeeec
Q 016231 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (393)
Q Consensus 335 ~~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t~ 392 (393)
....|.|-++|+.. ...|...|..| |.|....... ...+-+|.|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~~------~~NWihI~Y~s~ 69 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMSN------TGNWMHIRYQSK 69 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEECS------SSSEEEEEESSH
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccCC------CCCeEEEEeCCH
Confidence 45788999999985 56788899999 9999888721 245889999875
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=24.74 E-value=70 Score=32.62 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=33.6
Q ss_pred cceeeeCCCCCCCCHHHHHHHhhcCCCCCCCeEEEEEeecCCCCCCccEEEEEeee
Q 016231 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (393)
Q Consensus 336 ~~tLfVgNLp~~~teedL~e~F~~~~~~~G~I~~VrI~~d~~tg~~kGfaFVeF~t 391 (393)
...++|+ +|..|...+|.++|+.| |.| .|+++.+ ..|||.|.+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f----g~v-~V~widd-------t~a~V~~~~ 482 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF----GNI-QISWIDD-------TSAFVSLSQ 482 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG----CCC-EEEECSS-------SEEEEECSC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc----CCE-EEEEEcC-------CeEEEEECC
Confidence 4567777 99999999999999999 643 6776655 258999875
No 401
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.12 E-value=40 Score=31.52 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.7
Q ss_pred cEEEEeCCCccCCHHHHHHHhcccCCeeEEEEee
Q 016231 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRS 259 (393)
Q Consensus 226 rtVFVgNLp~~~tee~L~~~Fs~~G~I~sVri~~ 259 (393)
..+.|+|||+.++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3578999999999999999998765566555543
No 402
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.09 E-value=1.5e+02 Score=26.04 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEEeCCCc---------cCCHHHHHHHh--cccCCeeEEEEeeecccCCCCCccchhhhhhcccCCCceEEEEeeCC
Q 016231 227 TIFVGNLPL---------KVKKKTLIKEF--IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (393)
Q Consensus 227 tVFVgNLp~---------~~tee~L~~~F--s~~G~I~sVri~~~~~~~~~~~rkga~~~~k~~~~~srG~AFVeF~s 293 (393)
++.|-|+|. ......|.+.| +.|.++.-..+ ....+ ++|+|.|.|..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l----~~~~G----------------h~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL----WNYLG----------------HSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE----ECSSB----------------EEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec----ccCCC----------------CceeEEEEecC
Done!