Query 016232
Match_columns 393
No_of_seqs 172 out of 1248
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 3.5E-86 7.5E-91 652.0 22.8 310 36-355 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.3E-48 5.1E-53 366.6 24.4 253 32-347 42-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 2.2E-08 4.9E-13 100.1 23.1 247 50-353 26-329 (332)
4 COG3867 Arabinogalactan endo-1 98.6 7E-07 1.5E-11 87.0 14.8 252 49-355 64-390 (403)
5 PF03198 Glyco_hydro_72: Gluca 98.6 7.4E-07 1.6E-11 87.9 13.1 126 36-167 30-182 (314)
6 PRK10150 beta-D-glucuronidase; 98.2 0.00046 9.9E-09 74.5 23.5 257 36-353 295-585 (604)
7 PF00150 Cellulase: Cellulase 98.1 0.0008 1.7E-08 64.1 21.9 128 35-165 10-171 (281)
8 smart00633 Glyco_10 Glycosyl h 97.8 0.0049 1.1E-07 59.4 20.7 215 74-353 21-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 96.7 0.14 3.1E-06 49.0 17.8 168 119-349 64-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 94.2 0.55 1.2E-05 46.0 11.5 96 35-130 17-132 (298)
11 TIGR03356 BGL beta-galactosida 91.1 22 0.00047 37.1 22.8 77 265-348 335-414 (427)
12 cd02875 GH18_chitobiase Chitob 89.1 2.2 4.7E-05 43.4 9.2 96 61-159 55-151 (358)
13 PF02449 Glyco_hydro_42: Beta- 86.1 3.1 6.6E-05 42.3 8.2 83 50-132 12-140 (374)
14 PF00232 Glyco_hydro_1: Glycos 83.2 0.8 1.7E-05 48.0 2.6 281 51-346 61-430 (455)
15 cd00598 GH18_chitinase-like Th 78.1 6.1 0.00013 36.0 6.3 85 73-158 53-142 (210)
16 PF01229 Glyco_hydro_39: Glyco 76.8 1.1E+02 0.0023 32.5 16.2 248 58-351 50-351 (486)
17 PRK09936 hypothetical protein; 74.9 24 0.00053 35.1 9.7 59 35-93 21-96 (296)
18 cd02874 GH18_CFLE_spore_hydrol 74.0 21 0.00046 35.1 9.3 83 72-158 48-138 (313)
19 PRK13511 6-phospho-beta-galact 73.6 6.1 0.00013 41.8 5.6 47 50-96 56-121 (469)
20 smart00481 POLIIIAc DNA polyme 68.7 17 0.00037 27.2 5.7 44 48-91 15-63 (67)
21 PF07172 GRP: Glycine rich pro 65.8 4.7 0.0001 33.5 2.2 8 1-9 1-8 (95)
22 PF00925 GTP_cyclohydro2: GTP 65.5 7 0.00015 35.5 3.5 36 54-89 132-167 (169)
23 COG4782 Uncharacterized protei 63.8 21 0.00045 36.6 6.8 44 261-307 141-187 (377)
24 PRK10340 ebgA cryptic beta-D-g 63.7 78 0.0017 36.9 12.3 97 36-132 337-452 (1021)
25 PLN02998 beta-glucosidase 59.5 14 0.0003 39.5 4.9 46 51-96 85-149 (497)
26 PLN02814 beta-glucosidase 57.6 29 0.00062 37.2 6.9 46 51-96 80-144 (504)
27 PF14488 DUF4434: Domain of un 57.2 1.5E+02 0.0033 26.8 10.7 99 52-156 24-151 (166)
28 PRK09525 lacZ beta-D-galactosi 55.1 1.6E+02 0.0034 34.5 12.8 96 36-131 353-464 (1027)
29 PF00331 Glyco_hydro_10: Glyco 53.8 25 0.00054 35.1 5.4 222 73-352 63-312 (320)
30 PLN02849 beta-glucosidase 53.7 26 0.00057 37.4 5.9 46 51-96 82-146 (503)
31 cd02876 GH18_SI-CLP Stabilin-1 53.5 91 0.002 30.8 9.4 85 73-158 55-148 (318)
32 cd06545 GH18_3CO4_chitinase Th 53.2 39 0.00084 32.3 6.5 81 73-158 50-133 (253)
33 cd02872 GH18_chitolectin_chito 52.8 38 0.00082 34.0 6.7 81 76-157 62-151 (362)
34 PF02055 Glyco_hydro_30: O-Gly 51.6 1.7E+02 0.0037 31.3 11.5 66 105-170 207-283 (496)
35 PF03662 Glyco_hydro_79n: Glyc 50.2 1.8E+02 0.0038 29.4 10.8 178 74-284 114-302 (319)
36 KOG0626 Beta-glucosidase, lact 49.7 44 0.00096 35.9 6.7 84 263-354 403-500 (524)
37 TIGR00505 ribA GTP cyclohydrol 49.7 26 0.00056 32.5 4.5 33 54-86 131-163 (191)
38 PF05990 DUF900: Alpha/beta hy 49.6 64 0.0014 30.6 7.3 41 262-305 44-87 (233)
39 PRK00393 ribA GTP cyclohydrola 48.6 27 0.00059 32.5 4.5 33 54-86 134-166 (197)
40 cd02873 GH18_IDGF The IDGF's ( 47.8 92 0.002 32.3 8.7 20 139-158 168-187 (413)
41 smart00636 Glyco_18 Glycosyl h 45.3 66 0.0014 31.7 7.0 80 75-156 57-142 (334)
42 TIGR01579 MiaB-like-C MiaB-lik 45.1 3.5E+02 0.0076 27.7 12.5 140 47-216 166-330 (414)
43 PRK12485 bifunctional 3,4-dihy 44.1 27 0.00059 35.9 4.0 32 54-86 331-362 (369)
44 PRK09589 celA 6-phospho-beta-g 43.0 67 0.0015 34.1 6.9 47 50-96 69-135 (476)
45 PRK14019 bifunctional 3,4-dihy 41.5 32 0.00069 35.4 4.0 32 54-86 328-359 (367)
46 PF14871 GHL6: Hypothetical gl 41.5 63 0.0014 28.2 5.4 43 49-91 1-66 (132)
47 TIGR02495 NrdG2 anaerobic ribo 39.8 2.8E+02 0.006 24.8 12.0 41 47-87 46-95 (191)
48 PRK06552 keto-hydroxyglutarate 39.1 3.2E+02 0.007 25.7 10.2 88 49-154 118-210 (213)
49 TIGR03632 bact_S11 30S ribosom 38.5 75 0.0016 26.8 5.2 35 52-86 51-90 (108)
50 cd04743 NPD_PKS 2-Nitropropane 38.4 2.4E+02 0.0051 28.6 9.6 79 34-130 56-134 (320)
51 PLN03059 beta-galactosidase; P 38.0 5.9E+02 0.013 29.3 13.4 114 52-168 63-222 (840)
52 PRK13586 1-(5-phosphoribosyl)- 37.8 2E+02 0.0043 27.4 8.7 70 48-133 30-108 (232)
53 PRK13587 1-(5-phosphoribosyl)- 37.6 2.1E+02 0.0045 27.3 8.8 70 48-133 31-111 (234)
54 PRK09593 arb 6-phospho-beta-gl 37.5 70 0.0015 34.0 6.0 46 51-96 76-141 (478)
55 TIGR01233 lacG 6-phospho-beta- 37.3 74 0.0016 33.7 6.1 46 51-96 56-120 (467)
56 cd00641 GTP_cyclohydro2 GTP cy 37.0 52 0.0011 30.4 4.4 33 54-86 133-165 (193)
57 PRK14334 (dimethylallyl)adenos 36.4 2.8E+02 0.0062 28.8 10.3 138 47-214 166-327 (440)
58 cd06418 GH25_BacA-like BacA is 36.0 3.8E+02 0.0082 25.2 13.1 107 48-159 21-143 (212)
59 PF00977 His_biosynth: Histidi 35.4 1.1E+02 0.0025 28.8 6.6 71 47-133 28-108 (229)
60 PRK09314 bifunctional 3,4-dihy 34.2 53 0.0011 33.5 4.2 34 53-86 300-334 (339)
61 PRK09318 bifunctional 3,4-dihy 34.1 56 0.0012 33.9 4.5 37 54-90 320-356 (387)
62 COG2113 ProX ABC-type proline/ 34.0 1.3E+02 0.0027 30.2 6.9 38 55-93 52-90 (302)
63 PRK15014 6-phospho-beta-glucos 33.9 84 0.0018 33.4 5.9 46 50-95 71-136 (477)
64 PRK08815 GTP cyclohydrolase; P 33.7 57 0.0012 33.7 4.4 37 54-90 305-341 (375)
65 PRK14327 (dimethylallyl)adenos 33.6 4.4E+02 0.0095 28.3 11.3 139 47-215 240-403 (509)
66 PF14587 Glyco_hydr_30_2: O-Gl 33.5 1.9E+02 0.0041 30.1 8.1 95 73-169 108-227 (384)
67 PRK09311 bifunctional 3,4-dihy 33.2 58 0.0013 33.9 4.5 33 54-86 339-371 (402)
68 cd01543 PBP1_XylR Ligand-bindi 33.1 3.2E+02 0.0069 25.2 9.2 128 51-199 98-238 (265)
69 PF12876 Cellulase-like: Sugar 32.8 62 0.0013 25.8 3.7 51 115-167 5-63 (88)
70 PRK14024 phosphoribosyl isomer 32.7 2.6E+02 0.0056 26.6 8.6 69 49-133 33-110 (241)
71 cd04734 OYE_like_3_FMN Old yel 32.5 5.3E+02 0.012 25.9 15.0 131 175-310 62-207 (343)
72 PF01055 Glyco_hydro_31: Glyco 32.3 3.5E+02 0.0075 27.8 10.1 133 139-327 42-180 (441)
73 PLN02831 Bifunctional GTP cycl 32.2 61 0.0013 34.3 4.4 33 54-86 373-405 (450)
74 PRK14114 1-(5-phosphoribosyl)- 32.1 2.4E+02 0.0051 27.1 8.2 70 48-133 30-108 (241)
75 PRK09319 bifunctional 3,4-dihy 32.1 61 0.0013 35.1 4.5 37 54-90 343-379 (555)
76 PF14606 Lipase_GDSL_3: GDSL-l 30.9 2.9E+02 0.0063 25.5 8.2 46 262-309 88-135 (178)
77 COG1433 Uncharacterized conser 30.6 1.1E+02 0.0023 26.6 4.9 39 52-90 56-94 (121)
78 TIGR03628 arch_S11P archaeal r 29.6 1.2E+02 0.0027 25.9 5.2 36 51-86 53-101 (114)
79 TIGR02026 BchE magnesium-proto 28.9 7.2E+02 0.016 26.3 12.5 127 47-203 221-366 (497)
80 PF04909 Amidohydro_2: Amidohy 28.4 1.5E+02 0.0033 27.4 6.2 52 144-210 85-137 (273)
81 PF00411 Ribosomal_S11: Riboso 28.0 1.1E+02 0.0024 25.8 4.5 36 52-87 51-91 (110)
82 CHL00041 rps11 ribosomal prote 27.7 1.4E+02 0.0031 25.4 5.3 35 52-86 64-103 (116)
83 COG0621 MiaB 2-methylthioadeni 27.4 6.6E+02 0.014 26.5 11.1 58 138-214 278-335 (437)
84 PF00834 Ribul_P_3_epim: Ribul 27.2 3.1E+02 0.0068 25.6 7.9 97 49-162 68-169 (201)
85 COG0807 RibA GTP cyclohydrolas 26.9 96 0.0021 29.1 4.3 39 54-92 133-171 (193)
86 PF02811 PHP: PHP domain; Int 26.5 1.2E+02 0.0027 26.1 4.9 45 47-91 15-64 (175)
87 PRK14326 (dimethylallyl)adenos 26.2 5.2E+02 0.011 27.6 10.3 58 137-213 289-346 (502)
88 COG4213 XylF ABC-type xylose t 26.1 1E+02 0.0023 31.2 4.6 75 73-167 176-250 (341)
89 PRK09607 rps11p 30S ribosomal 26.0 1.5E+02 0.0033 26.1 5.2 36 51-86 60-108 (132)
90 COG3250 LacZ Beta-galactosidas 25.9 3.4E+02 0.0074 31.0 9.2 80 53-132 326-409 (808)
91 PRK14336 (dimethylallyl)adenos 25.7 7.6E+02 0.016 25.5 11.3 139 46-214 151-314 (418)
92 KOG0093 GTPase Rab3, small G p 25.6 1.4E+02 0.0031 27.2 5.0 59 64-130 71-136 (193)
93 KOG0078 GTP-binding protein SE 25.4 1.7E+02 0.0037 27.7 5.8 83 31-130 40-127 (207)
94 PRK14338 (dimethylallyl)adenos 25.3 4.9E+02 0.011 27.3 9.8 138 47-214 183-345 (459)
95 COG2730 BglC Endoglucanase [Ca 25.3 4.7E+02 0.01 27.0 9.6 104 51-156 76-218 (407)
96 PRK05309 30S ribosomal protein 24.1 1.8E+02 0.0039 25.3 5.3 35 52-86 68-107 (128)
97 PRK15412 thiol:disulfide inter 23.9 5.3E+02 0.012 23.1 8.9 43 62-111 70-119 (185)
98 PRK14332 (dimethylallyl)adenos 23.8 8.6E+02 0.019 25.5 12.6 195 46-277 181-397 (449)
99 cd04723 HisA_HisF Phosphoribos 23.6 3.7E+02 0.0079 25.4 7.8 69 49-133 36-113 (233)
100 PRK14328 (dimethylallyl)adenos 23.5 8.4E+02 0.018 25.3 11.7 58 138-214 280-337 (439)
101 PRK14339 (dimethylallyl)adenos 23.3 7.4E+02 0.016 25.6 10.6 58 138-214 263-320 (420)
102 PRK14330 (dimethylallyl)adenos 23.2 8.4E+02 0.018 25.2 11.9 77 121-216 250-332 (434)
103 PRK13347 coproporphyrinogen II 23.1 1.8E+02 0.0039 30.5 6.0 21 139-159 262-282 (453)
104 PF13377 Peripla_BP_3: Peripla 23.0 3.3E+02 0.0071 22.9 6.8 121 55-199 2-134 (160)
105 PRK08091 ribulose-phosphate 3- 22.6 6.8E+02 0.015 24.0 9.4 96 49-159 79-179 (228)
106 PF08002 DUF1697: Protein of u 22.4 60 0.0013 28.4 2.0 34 36-71 9-42 (137)
107 PRK03941 NTPase; Reviewed 22.0 6.3E+02 0.014 23.3 8.7 61 83-155 1-61 (174)
108 PRK07198 hypothetical protein; 22.0 77 0.0017 33.0 2.9 37 54-90 338-375 (418)
109 TIGR00735 hisF imidazoleglycer 21.2 4.8E+02 0.01 24.8 8.2 70 48-133 30-109 (254)
110 TIGR01125 MiaB-like tRNA modif 20.8 8.7E+02 0.019 25.0 10.6 60 138-216 268-327 (430)
111 PRK13585 1-(5-phosphoribosyl)- 20.8 5.4E+02 0.012 23.9 8.4 70 48-133 32-111 (241)
112 cd00854 NagA N-acetylglucosami 20.7 1.4E+02 0.0031 30.1 4.7 44 47-91 145-194 (374)
113 PF11775 CobT_C: Cobalamin bio 20.7 52 0.0011 31.5 1.3 61 252-331 36-98 (219)
114 TIGR00640 acid_CoA_mut_C methy 20.5 2.6E+02 0.0056 24.2 5.6 41 48-88 40-90 (132)
115 PRK12581 oxaloacetate decarbox 20.3 1.5E+02 0.0033 31.6 4.8 41 50-90 103-153 (468)
116 PRK09852 cryptic 6-phospho-bet 20.1 2.9E+02 0.0062 29.4 6.9 46 51-96 74-139 (474)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=3.5e-86 Score=652.01 Aligned_cols=310 Identities=48% Similarity=0.886 Sum_probs=255.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhcc
Q 016232 36 YGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNF 115 (393)
Q Consensus 36 ~GinYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~ 115 (393)
+|||||+.++|+|+|.+|++++|+++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHH
Q 016232 116 LPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPL 195 (393)
Q Consensus 116 ~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ 195 (393)
+|+++|++|+||||++.... . ..|+|+|+++|++|+++||+++|||+|+++++++..+||||.|.|++++.+.|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~-~--~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTD-N--AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSG-G--GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCcc-c--eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 99999999999999998643 2 28999999999999999999899999999999999999999999999988999999
Q ss_pred HHHHhhcCCCceeecCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeee
Q 016232 196 LDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTET 275 (393)
Q Consensus 196 ldfL~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~g~~~~~vvItET 275 (393)
++||..++||||+|+||||++.++|..+++|||+|+++..++|+ ++.|+||||+|+|++++||+++|+++++|+|+||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998877754 7899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCceeEEEEEcccCCCCCCCCCCCceeeecCCCCeeEeeee
Q 016232 276 GWASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNENQKPGPTSERNFGLFKPDGSIAYDIGF 355 (393)
Q Consensus 276 GWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 355 (393)
||||+|+ ..|+++||+.|++|+++++. .|||+||+..+++||||+|||+||+|+.+|||||||++||+|||+++|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999 67999999999999999985 899999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-48 Score=366.55 Aligned_cols=253 Identities=24% Similarity=0.325 Sum_probs=204.6
Q ss_pred cCCceeEEecCCCCC--CCCHHHHHHHHHc-CCC-CEEEEecCC----hHHHHHHhcCCCEEEEecCCCchhhhhhcHHH
Q 016232 32 FTGTYGINYGRIADN--IPSPDEVAVLLRA-SKI-KNVRIYDAD----HSVLKAFSGTGLELVVGLPNGLVKEMSANESH 103 (393)
Q Consensus 32 ~~~~~GinYg~~~~n--~ps~~~v~~llk~-~~~-~~VRiY~~d----~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~ 103 (393)
..+..|||||++.++ ||+.+|+..+|.. ..+ ..||+|++| ++|++|+...|+||+||||..+. +..+.+
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd--~~~~~~- 118 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDD--IHDAVE- 118 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccc--hhhhHH-
Confidence 357789999999876 9999999876643 233 399999755 47999999999999999998552 222222
Q ss_pred HHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCccc
Q 016232 104 AMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCI 183 (393)
Q Consensus 104 A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~ 183 (393)
+-+..++.+++..+.|++|+||||+|+|++ ..+++|+.+|..+|.+|+.+|++ +||+|+++|.++.+
T Consensus 119 --~til~ay~~~~~~d~v~~v~VGnEal~r~~-~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-------- 185 (305)
T COG5309 119 --KTILSAYLPYNGWDDVTTVTVGNEALNRND-LTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-------- 185 (305)
T ss_pred --HHHHHHHhccCCCCceEEEEechhhhhcCC-CCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC--------
Confidence 125567888888889999999999999987 45999999999999999999997 56999999988875
Q ss_pred ccccchhhhHHHHHHHhhcCCCceeecCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHh
Q 016232 184 FKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDA 263 (393)
Q Consensus 184 F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~ 263 (393)
+|+||+..||+ |+|.||||+.+...+ + -..++-.|++-++++
T Consensus 186 -----np~l~~~SDfi-------a~N~~aYwd~~~~a~----------------~------~~~f~~~q~e~vqsa---- 227 (305)
T COG5309 186 -----NPELCQASDFI-------AANAHAYWDGQTVAN----------------A------AGTFLLEQLERVQSA---- 227 (305)
T ss_pred -----ChHHhhhhhhh-------hcccchhccccchhh----------------h------hhHHHHHHHHHHHHh----
Confidence 57889988887 699999998653221 0 113445567776655
Q ss_pred CCCCCcceEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCceeEEEEEcccCCCCC-CC-CCCCce
Q 016232 264 GFKKMEVIVTETGWASRGDSNE-AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNENQKP-GP-TSERNF 340 (393)
Q Consensus 264 g~~~~~vvItETGWPS~G~~~~-~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~wK~-g~-~~E~~w 340 (393)
+..+|+++|+||||||+|..+| +.||++||+.|+++++|.++ .+| .++|+||+|||+||. |. ++|+||
T Consensus 228 ~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-~~G--------~d~fvfeAFdd~WK~~~~y~VEkyw 298 (305)
T COG5309 228 CGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-SCG--------YDVFVFEAFDDDWKADGSYGVEKYW 298 (305)
T ss_pred cCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-ccC--------ccEEEeeeccccccCccccchhhce
Confidence 2345999999999999999987 79999999999999999885 454 899999999999994 54 799999
Q ss_pred eeecCCC
Q 016232 341 GLFKPDG 347 (393)
Q Consensus 341 Glf~~d~ 347 (393)
|+++.|+
T Consensus 299 Gv~~s~~ 305 (305)
T COG5309 299 GVLSSDR 305 (305)
T ss_pred eeeccCC
Confidence 9998875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.10 E-value=2.2e-08 Score=100.11 Aligned_cols=247 Identities=15% Similarity=0.237 Sum_probs=124.2
Q ss_pred HHHHHHHHHcCCCCEEEEe--c-------CC-hH---HHHHHhcCCCEEEEecCCCc---------h------hhhhhcH
Q 016232 50 PDEVAVLLRASKIKNVRIY--D-------AD-HS---VLKAFSGTGLELVVGLPNGL---------V------KEMSANE 101 (393)
Q Consensus 50 ~~~v~~llk~~~~~~VRiY--~-------~d-~~---vL~A~~~~gikV~lGV~n~~---------~------~~~a~~~ 101 (393)
..++.++||.+|++.||+= . || .. ..+.+++.||+|+|-.--+| + .++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 4678999999999876664 1 33 23 44556689999999875433 1 0111111
Q ss_pred HHHHHHHHHhhhccC-CCceEEEEeeccccccC-----CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccc
Q 016232 102 SHAMDWVKENVQNFL-PKTKICGIAVGNEVLGG-----ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFAN 175 (393)
Q Consensus 102 ~~A~~Wv~~~v~~~~-~~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~ 175 (393)
++...+.++-+...- -+..++.|-||||.-.+ +...-.+.+...++.-.+++|+.+-+ +||-.-.. +
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~-----~ 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLA-----N 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES------
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEC-----C
Confidence 222333322222211 23678999999997432 12234677888888888888885543 44433211 1
Q ss_pred cCCCCcccccccchhhhHHHHHHH---hhcCCCceeecCccccccCCCCccccccccccCCCccccCCCcccchhHHHHH
Q 016232 176 SYPPSSCIFKEGVDQFMKPLLDFF---SQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQ 252 (393)
Q Consensus 176 s~pPS~g~F~~~~~~~l~~~ldfL---~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~ 252 (393)
+-. ...+.-..|.| ...-|.+.++.||||... + +-+...
T Consensus 179 --~~~--------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l---------------------~~l~~~ 220 (332)
T PF07745_consen 179 --GGD--------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L---------------------EDLKNN 220 (332)
T ss_dssp --TTS--------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H---------------------HHHHHH
T ss_pred --CCc--------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H---------------------HHHHHH
Confidence 000 01112222222 234478899999999641 0 112233
Q ss_pred HHHHHHHHHHhCCCCCcceEeeeccCCCCC-----CCC---------CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCce
Q 016232 253 IDAAYAALEDAGFKKMEVIVTETGWASRGD-----SNE---------AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVV 318 (393)
Q Consensus 253 vDa~~~a~~~~g~~~~~vvItETGWPS~G~-----~~~---------~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~ 318 (393)
++.+. ++ | +|+|+|.|||||..-. .+. -.+|++.|++|++++++.+.+- |. +...
T Consensus 221 l~~l~---~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~ 289 (332)
T PF07745_consen 221 LNDLA---SR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGL 289 (332)
T ss_dssp HHHHH---HH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEE
T ss_pred HHHHH---HH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeE
Confidence 33322 22 3 6999999999999822 111 1368999999999999988642 11 1235
Q ss_pred eEEEEEcc-cCCC-----CCCCCCCCceeeecCCCCeeEee
Q 016232 319 KAYVFAIF-NENQ-----KPGPTSERNFGLFKPDGSIAYDI 353 (393)
Q Consensus 319 ~~y~F~~F-De~w-----K~g~~~E~~wGlf~~d~~~ky~l 353 (393)
-+|+-|-- -..+ ..|...|.. +||+.+|++--.|
T Consensus 290 GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 290 GVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 56665532 2211 133344544 8999888765443
No 4
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=7e-07 Score=87.04 Aligned_cols=252 Identities=15% Similarity=0.284 Sum_probs=136.6
Q ss_pred CHHHHHHHHHcCCCCEEEE--e----cCC--------h------HHHHHHhcCCCEEEEecCCCchh-hhhhcHHHHHHH
Q 016232 49 SPDEVAVLLRASKIKNVRI--Y----DAD--------H------SVLKAFSGTGLELVVGLPNGLVK-EMSANESHAMDW 107 (393)
Q Consensus 49 s~~~v~~llk~~~~~~VRi--Y----~~d--------~------~vL~A~~~~gikV~lGV~n~~~~-~~a~~~~~A~~W 107 (393)
-.+++.+.||.+|++.||+ | +.| . ++-+.+++.||||++-.-.+|.- +-+ .+..-++|
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPa-kQ~kPkaW 142 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPA-KQKKPKAW 142 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChh-hcCCcHHh
Confidence 4567889999999986665 4 222 1 24455667999999987654410 000 11111223
Q ss_pred H-------HHhhhcc--------C-CCceEEEEeeccccccC-----CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEe
Q 016232 108 V-------KENVQNF--------L-PKTKICGIAVGNEVLGG-----ADSELWGALLGAVKNVYNSIKKLHLDDVVQITT 166 (393)
Q Consensus 108 v-------~~~v~~~--------~-~~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT 166 (393)
. +..|-.| . -+..+..|-||||.-.. ++..-...+...++.--+++|... ..|||-.
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~l 220 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVAL 220 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEE
Confidence 2 2222111 0 13567889999998532 222124455555555556666533 2466544
Q ss_pred ceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCccccccCCCCccccccccccCCCccccCCCcccch
Q 016232 167 AHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYD 246 (393)
Q Consensus 167 ~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~ 246 (393)
- +.+.- -.+.|+--....-+.-+|| +.+.+--||||...-+ .+ +
T Consensus 221 H-----la~g~--~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~----------------------nL--~ 264 (403)
T COG3867 221 H-----LAEGE--NNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN----------------------NL--T 264 (403)
T ss_pred E-----ecCCC--CCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH----------------------HH--H
Confidence 2 22211 2233331111112223333 5678889999975211 01 1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcceEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCC
Q 016232 247 NMLDAQIDAAYAALEDAGFKKMEVIVTETGW--------------ASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTPL 312 (393)
Q Consensus 247 nlfda~vDa~~~a~~~~g~~~~~vvItETGW--------------PS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~ 312 (393)
+.++++-+ .-+|.|+|.||+. |+.+...+-..+++-|++|.++++..+.+ .|.
T Consensus 265 ~nl~dia~----------rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp~ 331 (403)
T COG3867 265 TNLNDIAS----------RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VPK 331 (403)
T ss_pred hHHHHHHH----------HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CCC
Confidence 11222221 1379999999998 66553322346889999999999998853 222
Q ss_pred CCCCceeEEEEE-------------------cccCCCCCCCCCCCceeeecCCCCeeEeeee
Q 016232 313 RPKNVVKAYVFA-------------------IFNENQKPGPTSERNFGLFKPDGSIAYDIGF 355 (393)
Q Consensus 313 rpg~~~~~y~F~-------------------~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 355 (393)
-.| .-+|+.| .-.|+|++|..++.. -||+.+|.|-..|+.
T Consensus 332 ~~G--lGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~v 390 (403)
T COG3867 332 SNG--LGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLNV 390 (403)
T ss_pred CCc--eEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchhh
Confidence 212 3344433 223667666544444 588888888777765
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.58 E-value=7.4e-07 Score=87.89 Aligned_cols=126 Identities=21% Similarity=0.393 Sum_probs=73.8
Q ss_pred eeEEecCCCCC--------CCCHHH---HHHHHHcCCCCEEEEecCCh-----HHHHHHhcCCCEEEEecCCCchhhhhh
Q 016232 36 YGINYGRIADN--------IPSPDE---VAVLLRASKIKNVRIYDADH-----SVLKAFSGTGLELVVGLPNGLVKEMSA 99 (393)
Q Consensus 36 ~GinYg~~~~n--------~ps~~~---v~~llk~~~~~~VRiY~~d~-----~vL~A~~~~gikV~lGV~n~~~~~~a~ 99 (393)
.||.|-|-++. |..++. .+.+||..|++.||+|..|| .-.++|++.||-|++.+.... .++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-ccccC
Confidence 69999876551 323332 35678899999999998774 478899999999999987642 22222
Q ss_pred cHHHHHHH----------HHHhhhccCCCceEEEEeeccccccCC-CcchHHHHHHHHHHHHHHHHhCCCCCCeEEEec
Q 016232 100 NESHAMDW----------VKENVQNFLPKTKICGIAVGNEVLGGA-DSELWGALLGAVKNVYNSIKKLHLDDVVQITTA 167 (393)
Q Consensus 100 ~~~~A~~W----------v~~~v~~~~~~~~I~~I~VGNEvl~~~-~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~ 167 (393)
.. -+..| +.++...| +|+-+..+|||++... ....++.+-.+++++|+-+++.++. .|+|+-+
T Consensus 109 ~~-P~~sw~~~l~~~~~~vid~fa~Y---~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYs 182 (314)
T PF03198_consen 109 SD-PAPSWNTDLLDRYFAVIDAFAKY---DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYS 182 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHTT----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE
T ss_pred CC-CcCCCCHHHHHHHHHHHHHhccC---CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEE
Confidence 11 11223 22333344 7899999999999763 2346888999999999999999986 4888865
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.16 E-value=0.00046 Score=74.51 Aligned_cols=257 Identities=14% Similarity=0.136 Sum_probs=137.2
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHcCCCCEEEEec--CChHHHHHHhcCCCEEEEecCCCc--------------
Q 016232 36 YGINYGRIA---DNIPSPDEV---AVLLRASKIKNVRIYD--ADHSVLKAFSGTGLELVVGLPNGL-------------- 93 (393)
Q Consensus 36 ~GinYg~~~---~n~ps~~~v---~~llk~~~~~~VRiY~--~d~~vL~A~~~~gikV~lGV~n~~-------------- 93 (393)
.|+|+=... ....+.+.. +++||..|++.||+-. .++..+.+|...||-|+.=++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 477763221 112344443 5678999999999953 257899999999998875442110
Q ss_pred -hhhhh------hcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEe
Q 016232 94 -VKEMS------ANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVVQITT 166 (393)
Q Consensus 94 -~~~~a------~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT 166 (393)
.+... +..+....-+++.|..+.....|..=++|||.-... ...-..++.+.+.+|+..- .=+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~Dp--tR~vt~ 447 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDP--TRPVTC 447 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCC--CCceEE
Confidence 00010 011222333555666654334588999999974321 1222344455555554432 223565
Q ss_pred ceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCccccccCCCCccccccccccCCCccccCCCcccch
Q 016232 167 AHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYD 246 (393)
Q Consensus 167 ~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~ 246 (393)
...+. . .|. ...+.+.+|++ ..|.|+=|- .+..+. + ...
T Consensus 448 ~~~~~---~--~~~--------~~~~~~~~Dv~-------~~N~Y~~wy--~~~~~~----~---------------~~~ 486 (604)
T PRK10150 448 VNVMF---A--TPD--------TDTVSDLVDVL-------CLNRYYGWY--VDSGDL----E---------------TAE 486 (604)
T ss_pred Eeccc---C--Ccc--------cccccCcccEE-------EEcccceec--CCCCCH----H---------------HHH
Confidence 43210 0 110 01123455655 478765321 111000 0 011
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcceEeeeccCCCCC-CC-C-CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCceeEEEE
Q 016232 247 NMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGD-SN-E-AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVF 323 (393)
Q Consensus 247 nlfda~vDa~~~a~~~~g~~~~~vvItETGWPS~G~-~~-~-~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F 323 (393)
..++..++.. .+. + +||++++|.|+.+.-+ .. + ..-|.+.|..|++...+.+.+ +|. -.-.|+.
T Consensus 487 ~~~~~~~~~~----~~~-~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW 553 (604)
T PRK10150 487 KVLEKELLAW----QEK-L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVW 553 (604)
T ss_pred HHHHHHHHHH----HHh-c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEE
Confidence 1222223221 111 2 8999999999766322 11 1 234788999998877776542 232 2458899
Q ss_pred EcccCCCCCCC--CCCCceeeecCCCCeeEee
Q 016232 324 AIFNENQKPGP--TSERNFGLFKPDGSIAYDI 353 (393)
Q Consensus 324 ~~FDe~wK~g~--~~E~~wGlf~~d~~~ky~l 353 (393)
.+||-....|. .-..+.||++.||+||-..
T Consensus 554 ~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 554 NFADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred eeeccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 99995554331 1234789999999999755
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.12 E-value=0.0008 Score=64.14 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=81.3
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHcCCCCEEEEecC-------------C-------hHHHHHHhcCCCEEEEecCCC--
Q 016232 35 TYGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDA-------------D-------HSVLKAFSGTGLELVVGLPNG-- 92 (393)
Q Consensus 35 ~~GinYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~-------------d-------~~vL~A~~~~gikV~lGV~n~-- 92 (393)
..|+|-. ..++. ..++.++.+++.|++.||+.-. + ..+|+++++.||+|+|.+...
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3566665 22222 6788899999999999999721 1 157888999999999987763
Q ss_pred ---chhhhhhcHHHHHHHHHH---hh-hccCCCceEEEEeeccccccCCCc-----chHHHHHHHHHHHHHHHHhCCCCC
Q 016232 93 ---LVKEMSANESHAMDWVKE---NV-QNFLPKTKICGIAVGNEVLGGADS-----ELWGALLGAVKNVYNSIKKLHLDD 160 (393)
Q Consensus 93 ---~~~~~a~~~~~A~~Wv~~---~v-~~~~~~~~I~~I~VGNEvl~~~~~-----~~~~~Lv~ai~~v~~aL~~~gl~~ 160 (393)
..... ........|+.+ .+ ..|.....|.++=+.||+...... .....+.+.++.+.+++|+.+-..
T Consensus 88 w~~~~~~~-~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGY-GNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTT-TTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccccc-ccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 11111 122223333322 23 334234557899999999876322 124778899999999999998764
Q ss_pred CeEEE
Q 016232 161 VVQIT 165 (393)
Q Consensus 161 ~I~Vs 165 (393)
.|-|+
T Consensus 167 ~i~~~ 171 (281)
T PF00150_consen 167 LIIVG 171 (281)
T ss_dssp EEEEE
T ss_pred eeecC
Confidence 33333
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.78 E-value=0.0049 Score=59.38 Aligned_cols=215 Identities=15% Similarity=0.139 Sum_probs=112.4
Q ss_pred HHHHHhcCCCEEEE--ecCCCchhhhhh------cHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCc----chHHH
Q 016232 74 VLKAFSGTGLELVV--GLPNGLVKEMSA------NESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADS----ELWGA 141 (393)
Q Consensus 74 vL~A~~~~gikV~l--GV~n~~~~~~a~------~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~----~~~~~ 141 (393)
+++.+++.||+|-- =+|....+.... ..++..+++++.+..| . ..|..+=|.||.+..+.. +....
T Consensus 21 ~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry-~-g~i~~wdV~NE~~~~~~~~~~~~~w~~ 98 (254)
T smart00633 21 IVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY-K-GKIYAWDVVNEALHDNGSGLRRSVWYQ 98 (254)
T ss_pred HHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh-C-CcceEEEEeeecccCCCcccccchHHH
Confidence 55566666766521 144333333222 1344456676666666 3 358999999999864211 12222
Q ss_pred HH--HHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCc-eeecCccccccC
Q 016232 142 LL--GAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPF-CLNVYPFLAYMS 218 (393)
Q Consensus 142 Lv--~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~-~vNiyPyf~~~~ 218 (393)
.+ .+|...-++.+++.- .+++-.-+ .++.. ++ .-...+..+++-|.+.+-|+ .|.+...|..
T Consensus 99 ~~G~~~i~~af~~ar~~~P--~a~l~~Nd-y~~~~---~~-------~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~-- 163 (254)
T smart00633 99 ILGEDYIEKAFRYAREADP--DAKLFYND-YNTEE---PN-------AKRQAIYELVKKLKAKGVPIDGIGLQSHLSL-- 163 (254)
T ss_pred hcChHHHHHHHHHHHHhCC--CCEEEEec-cCCcC---cc-------HHHHHHHHHHHHHHHCCCccceeeeeeeecC--
Confidence 22 344555555555442 24433321 11111 10 00234556666666555442 1111111100
Q ss_pred CCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeccCCCCCCCCCCCCHHHHHHHHH
Q 016232 219 DPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDSNEAAATVDNARTYNY 298 (393)
Q Consensus 219 ~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~g~~~~~vvItETGWPS~G~~~~~~as~~na~~y~~ 298 (393)
+ +.+ ++.+...|++.+.-+++|.|||.+-|..+ +++.|+.+++
T Consensus 164 --------------~-----------~~~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~ 206 (254)
T smart00633 164 --------------G-----------SPN-----IAEIRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYE 206 (254)
T ss_pred --------------C-----------CCC-----HHHHHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHH
Confidence 0 001 11223333444444899999999998753 3488999999
Q ss_pred HHHHHHHhhCCCCCCCCCceeEEEEEcccC-CCCCCCCCCCceeeecCCCCeeEee
Q 016232 299 NLRKRLAKKKGTPLRPKNVVKAYVFAIFNE-NQKPGPTSERNFGLFKPDGSIAYDI 353 (393)
Q Consensus 299 ~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~~~E~~wGlf~~d~~~ky~l 353 (393)
++++.+.+. |. -.-+++..+.|. .|.++ .+-|||+.|++||-.+
T Consensus 207 ~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 207 EVFKACLAH---PA----VTGVTVWGVTDKYSWLDG----GAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHHHcC---CC----eeEEEEeCCccCCcccCC----CCceeECCCCCCChhh
Confidence 999988643 21 134556666653 45542 4679999999988643
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.73 E-value=0.14 Score=48.99 Aligned_cols=168 Identities=15% Similarity=0.094 Sum_probs=90.9
Q ss_pred ceEEEEeeccccccCC-CcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHH
Q 016232 119 TKICGIAVGNEVLGGA-DSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLD 197 (393)
Q Consensus 119 ~~I~~I~VGNEvl~~~-~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ld 197 (393)
..++.|..=||+=... ....+++.+...+++.+.|+. ..+++..|..... ...+|+...| |.+.++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~--~~~~~~g~~W-------l~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFT--NGGTPGGLDW-------LSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeeccc--CCCCCCccHH-------HHHHHH
Confidence 4688999999985432 122467777777777777663 2467776642100 0001112222 222222
Q ss_pred HHhhcCCCceeecCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeecc
Q 016232 198 FFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGW 277 (393)
Q Consensus 198 fL~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~g~~~~~vvItETGW 277 (393)
-+.....+=.+++|+| . .+. .-|...++.++ ++. +|||+|||.|+
T Consensus 131 ~~~~~~~~D~iavH~Y-~--~~~--------------------------~~~~~~i~~~~---~~~---~kPIWITEf~~ 175 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY-G--GDA--------------------------DDFKDYIDDLH---NRY---GKPIWITEFGC 175 (239)
T ss_pred hcccCCCccEEEEecC-C--cCH--------------------------HHHHHHHHHHH---HHh---CCCEEEEeecc
Confidence 1110112223455555 1 000 01233343332 333 39999999998
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCceeEEEEEcccCCCCCCCCCCCceeeecCCCCe
Q 016232 278 ASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNENQKPGPTSERNFGLFKPDGSI 349 (393)
Q Consensus 278 PS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d~~~ 349 (393)
...+ ...+.++++.|++..+..+.+.. . -..++||...++ .. .+...-.|++.+|++
T Consensus 176 ~~~~----~~~~~~~~~~fl~~~~~~ld~~~------~-VeryawF~~~~~-~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 176 WNGG----SQGSDEQQASFLRQALPWLDSQP------Y-VERYAWFGFMND-GS---GVNPNSALLDADGSL 232 (239)
T ss_pred cCCC----CCCCHHHHHHHHHHHHHHHhcCC------C-eeEEEecccccc-cC---CCccccccccCCCCc
Confidence 8722 35888999999999999885322 2 356888883332 22 345556677777643
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=94.22 E-value=0.55 Score=46.03 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=55.5
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHcCCCCEEEEec--CChHHHHHHhcCCCEEEEecCCCch---hhh------
Q 016232 35 TYGINYGRIAD---NIPSPDEV---AVLLRASKIKNVRIYD--ADHSVLKAFSGTGLELVVGLPNGLV---KEM------ 97 (393)
Q Consensus 35 ~~GinYg~~~~---n~ps~~~v---~~llk~~~~~~VRiY~--~d~~vL~A~~~~gikV~lGV~n~~~---~~~------ 97 (393)
..|+|+..... ...+.+++ ++++|..|++.||+.. .++..+.++...||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 45899886432 23455555 4567899999999964 3579999999999999977654110 000
Q ss_pred hh---cHHHHHHHHHHhhhccCCCceEEEEeecccc
Q 016232 98 SA---NESHAMDWVKENVQNFLPKTKICGIAVGNEV 130 (393)
Q Consensus 98 a~---~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEv 130 (393)
.. ..+.+.+.+++.|..+.-.-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 01 1223344456666665433458888899999
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=91.10 E-value=22 Score=37.14 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=45.0
Q ss_pred CCCCcceEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--hCCCCCCCCCceeEEEEEcccC-CCCCCCCCCCcee
Q 016232 265 FKKMEVIVTETGWASRGDSNEAAATVDNARTYNYNLRKRLAK--KKGTPLRPKNVVKAYVFAIFNE-NQKPGPTSERNFG 341 (393)
Q Consensus 265 ~~~~~vvItETGWPS~G~~~~~~as~~na~~y~~~li~~~~~--~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~~~E~~wG 341 (393)
+++.||+|||.|+............-+.-..|++.-++.+.+ ..|-|. .-|+.-++.|- .|.. +.++.||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~Wsl~Dn~ew~~--gy~~rfG 407 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDV-----RGYFVWSLLDNFEWAE--GYSKRFG 407 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEecccccccchhc--ccccccc
Confidence 555689999999975432110011122334455555444432 245443 24677777774 3444 4899999
Q ss_pred eecCCCC
Q 016232 342 LFKPDGS 348 (393)
Q Consensus 342 lf~~d~~ 348 (393)
|++-|+.
T Consensus 408 l~~VD~~ 414 (427)
T TIGR03356 408 LVHVDYE 414 (427)
T ss_pred eEEECCC
Confidence 9998765
No 12
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=89.15 E-value=2.2 Score=43.39 Aligned_cols=96 Identities=21% Similarity=0.280 Sum_probs=57.8
Q ss_pred CCCEEEEec-CChHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchH
Q 016232 61 KIKNVRIYD-ADHSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELW 139 (393)
Q Consensus 61 ~~~~VRiY~-~d~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~ 139 (393)
.+++|-+|+ .|++++..+.+.|++|++..-.. .+.+ ++++.-+++++.-| .+...-...+|-+==|-....+....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 468888886 57899999999999999864322 2223 35444444544333 12111234555554444322122234
Q ss_pred HHHHHHHHHHHHHHHhCCCC
Q 016232 140 GALLGAVKNVYNSIKKLHLD 159 (393)
Q Consensus 140 ~~Lv~ai~~v~~aL~~~gl~ 159 (393)
..+...|+++|++|++.+.+
T Consensus 132 ~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 132 YALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 67889999999999987643
No 13
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.10 E-value=3.1 Score=42.28 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCCEEEEec-------CC---------hHHHHHHhcCCCEEEEecCCCchhh-----------------
Q 016232 50 PDEVAVLLRASKIKNVRIYD-------AD---------HSVLKAFSGTGLELVVGLPNGLVKE----------------- 96 (393)
Q Consensus 50 ~~~v~~llk~~~~~~VRiY~-------~d---------~~vL~A~~~~gikV~lGV~n~~~~~----------------- 96 (393)
.++.+++||..|++.|||-. +. ..+|..+++.||+|+|+++....+.
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 35667788889999999732 11 2588888999999999986321100
Q ss_pred ---------hhhc----HHHHHHHHHHhhhccCCCceEEEEeecccccc
Q 016232 97 ---------MSAN----ESHAMDWVKENVQNFLPKTKICGIAVGNEVLG 132 (393)
Q Consensus 97 ---------~a~~----~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~ 132 (393)
..-+ .+.+.+.+++-+..|-....|.++-|+||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0001 23445555555566655567999999999765
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=83.21 E-value=0.8 Score=47.97 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=126.0
Q ss_pred HHHHHHHHcCCCCEEEEe--------c-----CC-------hHHHHHHhcCCCEEEEecCCCchhhhhh------cHHHH
Q 016232 51 DEVAVLLRASKIKNVRIY--------D-----AD-------HSVLKAFSGTGLELVVGLPNGLVKEMSA------NESHA 104 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY--------~-----~d-------~~vL~A~~~~gikV~lGV~n~~~~~~a~------~~~~A 104 (393)
+|.+++||+.|++..|+= + .| .+++..+++.||+.+|.+.--+++..-. +.+.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 567889999999999975 1 12 2689999999999999987555443211 11222
Q ss_pred HH---HHHHhhhccCCCceEEEEeeccccccC-------C-----Cc------chHHHHHHHHHHHHHHHHhCCCCCCeE
Q 016232 105 MD---WVKENVQNFLPKTKICGIAVGNEVLGG-------A-----DS------ELWGALLGAVKNVYNSIKKLHLDDVVQ 163 (393)
Q Consensus 105 ~~---Wv~~~v~~~~~~~~I~~I~VGNEvl~~-------~-----~~------~~~~~Lv~ai~~v~~aL~~~gl~~~I~ 163 (393)
+. ..+.-++.+ + +.|+.-+.=||...- + .. .....++-+-..+.+++++.+-+ .+
T Consensus 141 ~~F~~Ya~~~~~~~-g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~~ 216 (455)
T PF00232_consen 141 DWFARYAEFVFERF-G-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--GK 216 (455)
T ss_dssp HHHHHHHHHHHHHH-T-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--SE
T ss_pred HHHHHHHHHHHHHh-C-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--eE
Confidence 11 122122233 3 468888888997521 0 00 11233555556666677776643 45
Q ss_pred EEeceeccccc--ccCCC---------------------Ccccccccchhhh----------HHHHHHHhhcCCCceeec
Q 016232 164 ITTAHSQAVFA--NSYPP---------------------SSCIFKEGVDQFM----------KPLLDFFSQIGSPFCLNV 210 (393)
Q Consensus 164 VsT~~~~~~l~--~s~pP---------------------S~g~F~~~~~~~l----------~~~ldfL~~~~sp~~vNi 210 (393)
|+..++..... +..++ -.|.|...+...+ .+-...|..+.|.+++|-
T Consensus 217 IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNY 296 (455)
T PF00232_consen 217 IGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINY 296 (455)
T ss_dssp EEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEE
T ss_pred EeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhcc
Confidence 66665543221 00000 0122211111100 012233456778888998
Q ss_pred CccccccCCC-Ccccccccc---ccC--C-CccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeccCCCCCC
Q 016232 211 YPFLAYMSDP-ENIDINYAL---FQS--T-QGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDS 283 (393)
Q Consensus 211 yPyf~~~~~~-~~i~ld~Al---f~~--~-~~~vd~~~~~~y~nlfda~vDa~~~a~~~~g~~~~~vvItETGWPS~G~~ 283 (393)
|.=---...+ ......+.. +.. + .......+-..|..-+..++.- +. .-++++||+|||.|++.....
T Consensus 297 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~----l~-~~Y~~~pI~ITENG~~~~~~~ 371 (455)
T PF00232_consen 297 YTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRY----LK-DRYGNPPIYITENGIGDPDEV 371 (455)
T ss_dssp SEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHH----HH-HHHTSSEEEEEEE---EETTC
T ss_pred ccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhh----hc-cccCCCcEEEecccccccccc
Confidence 7432111111 011111110 000 0 0000001111122222222221 11 126789999999999888753
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh--hCCCCCCCCCceeEEEEEcccCCCCCCCCCCCceeeecCC
Q 016232 284 NEAAATVDNARTYNYNLRKRLAK--KKGTPLRPKNVVKAYVFAIFNENQKPGPTSERNFGLFKPD 346 (393)
Q Consensus 284 ~~~~as~~na~~y~~~li~~~~~--~~Gtp~rpg~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d 346 (393)
....---..--.|++.-+..+.+ ..|-+. .-+|..++.|- +--+.+..+.|||++-|
T Consensus 372 ~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V-----~GY~~WSl~Dn-~Ew~~Gy~~rfGl~~VD 430 (455)
T PF00232_consen 372 DDGKVDDDYRIDYLQDHLNQVLKAIEDGVNV-----RGYFAWSLLDN-FEWAEGYKKRFGLVYVD 430 (455)
T ss_dssp TTSHBSHHHHHHHHHHHHHHHHHHHHTT-EE-----EEEEEETSB----BGGGGGGSE--SEEEE
T ss_pred cccCcCcHHHHHHHHHHHHHHHhhhccCCCe-----eeEeeeccccc-cccccCccCccCceEEc
Confidence 32111122333344444333321 345322 24667777773 33222489999999988
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=78.13 E-value=6.1 Score=35.97 Aligned_cols=85 Identities=12% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHHHHhcC--CCEEEEecCCCchh---hhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHHHHHH
Q 016232 73 SVLKAFSGT--GLELVVGLPNGLVK---EMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVK 147 (393)
Q Consensus 73 ~vL~A~~~~--gikV~lGV~n~~~~---~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~ 147 (393)
.-++.+++. |+||++.|...... .++.+.+..++.++ ++..+...-.+.+|-+==|.....+......++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345666654 99999888753322 23444443333222 2222221123455555434433211012577899999
Q ss_pred HHHHHHHhCCC
Q 016232 148 NVYNSIKKLHL 158 (393)
Q Consensus 148 ~v~~aL~~~gl 158 (393)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 16
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=76.78 E-value=1.1e+02 Score=32.48 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=106.0
Q ss_pred HcCCCCEEEEec--CC---------------------hHHHHHHhcCCCEEEEecC--CCchh-----hhh--------h
Q 016232 58 RASKIKNVRIYD--AD---------------------HSVLKAFSGTGLELVVGLP--NGLVK-----EMS--------A 99 (393)
Q Consensus 58 k~~~~~~VRiY~--~d---------------------~~vL~A~~~~gikV~lGV~--n~~~~-----~~a--------~ 99 (393)
+..||+.||+.+ +| -.++..+.+.|++-+|-+- ...+. .+. .
T Consensus 50 ~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~pp~ 129 (486)
T PF01229_consen 50 EELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNISPPK 129 (486)
T ss_dssp CCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S-BS
T ss_pred hccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcCCcc
Confidence 457999999984 11 1478888999999765432 11110 000 1
Q ss_pred cHH----HHHHHHHHhhhccCCCceEE--EEeeccccccC--CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecc
Q 016232 100 NES----HAMDWVKENVQNFLPKTKIC--GIAVGNEVLGG--ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQA 171 (393)
Q Consensus 100 ~~~----~A~~Wv~~~v~~~~~~~~I~--~I~VGNEvl~~--~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~ 171 (393)
+.+ -..++++..+.+|. ...|. ..=|=||+=.. .......+-...-+...++||+..- .++|+-|-..
T Consensus 130 ~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p--~~~vGGp~~~- 205 (486)
T PF01229_consen 130 DYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDP--ELKVGGPAFA- 205 (486)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-T--TSEEEEEEEE-
T ss_pred cHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCC--CCcccCcccc-
Confidence 111 22333444444431 11111 34468885332 1112345567777888888888753 4788887210
Q ss_pred cccccCCCCcccccccchhhhHHHHHHHhhcCCC---ceeecCccccccCCCCccccccccccCCCccccCCCcccchhH
Q 016232 172 VFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSP---FCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNM 248 (393)
Q Consensus 172 ~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp---~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nl 248 (393)
+. ...-+...++|+..++.| +..|.||+=........ . ...+. ....+
T Consensus 206 -~~-------------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~------~----~~~~~-----~~~~~ 256 (486)
T PF01229_consen 206 -WA-------------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINEN------M----YERIE-----DSRRL 256 (486)
T ss_dssp -TT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-------E----EEEB-------HHHH
T ss_pred -cc-------------HHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchh------H----Hhhhh-----hHHHH
Confidence 00 012345566666654433 34566664211100000 0 00010 01122
Q ss_pred HHHHHHHHHHHHHHhCCCCCcceEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCceeEEEE---E
Q 016232 249 LDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDSNE-AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVF---A 324 (393)
Q Consensus 249 fda~vDa~~~a~~~~g~~~~~vvItETGWPS~G~~~~-~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F---~ 324 (393)
++. +..+...+...+.|++++.++| |.+.-.... -.-|.-+|+-..+++++... + ..+.|-+ +
T Consensus 257 ~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~---~-------~l~~~sywt~s 323 (486)
T PF01229_consen 257 FPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG---A-------FLDSFSYWTFS 323 (486)
T ss_dssp HHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG---G-------T-SEEEES-SB
T ss_pred HHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh---h-------hhhhhhccchh
Confidence 222 2223334555678999999999 877665432 12344555544444554431 1 1333222 1
Q ss_pred -cccCCCCCCCCCCCceeeecCCCCeeE
Q 016232 325 -IFNENQKPGPTSERNFGLFKPDGSIAY 351 (393)
Q Consensus 325 -~FDe~wK~g~~~E~~wGlf~~d~~~ky 351 (393)
.|.|.-.+...+-.-|||++.+|-+|-
T Consensus 324 D~Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 324 DRFEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp S---TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred hhhhccCCCCCceecchhhhhccCCCch
Confidence 232222221235566999999986664
No 17
>PRK09936 hypothetical protein; Provisional
Probab=74.88 E-value=24 Score=35.08 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=41.0
Q ss_pred ceeEEecCCCCC-CCCHHHH---HHHHHcCCCCEEEE-e----cCC--------hHHHHHHhcCCCEEEEecCCCc
Q 016232 35 TYGINYGRIADN-IPSPDEV---AVLLRASKIKNVRI-Y----DAD--------HSVLKAFSGTGLELVVGLPNGL 93 (393)
Q Consensus 35 ~~GinYg~~~~n-~ps~~~v---~~llk~~~~~~VRi-Y----~~d--------~~vL~A~~~~gikV~lGV~n~~ 93 (393)
..|+=|-|...+ --++++- .+.++..|++.+=+ | +.| .+.++++.+.||+|.||++-|.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 345779998766 3355554 45556789876643 2 222 3688888999999999999864
No 18
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=74.04 E-value=21 Score=35.08 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=49.5
Q ss_pred hHHHHHHhcCCCEEEEecCCCc--------hhhhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHH
Q 016232 72 HSVLKAFSGTGLELVVGLPNGL--------VKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALL 143 (393)
Q Consensus 72 ~~vL~A~~~~gikV~lGV~n~~--------~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv 143 (393)
++++.++++.|+||++.|.+.. ...+.++++.-+..+ +++..+...-.+.+|-+-=|.+.. ......+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVPP---EDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCCH---HHHHHHH
Confidence 5788888889999998886532 233444443323332 233222211134555555565432 2345688
Q ss_pred HHHHHHHHHHHhCCC
Q 016232 144 GAVKNVYNSIKKLHL 158 (393)
Q Consensus 144 ~ai~~v~~aL~~~gl 158 (393)
..++.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987665
No 19
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=73.60 E-value=6.1 Score=41.75 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCEEEEe---------c---CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 016232 50 PDEVAVLLRASKIKNVRIY---------D---AD-------HSVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 50 ~~~v~~llk~~~~~~VRiY---------~---~d-------~~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
-+|.+++||+.|++..|+= + .| .+++.++.+.||+-+|.++--+++.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 3577889999998888764 1 13 2689999999999999998666554
No 20
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=68.67 E-value=17 Score=27.22 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHcCCCCEEEEecCC-----hHHHHHHhcCCCEEEEecCC
Q 016232 48 PSPDEVAVLLRASKIKNVRIYDAD-----HSVLKAFSGTGLELVVGLPN 91 (393)
Q Consensus 48 ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~~gikV~lGV~n 91 (393)
-++++.++..+.+|++.|=+=|.+ +...+.+++.|++++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 368899999999999999887765 35666677899999999854
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.80 E-value=4.7 Score=33.46 Aligned_cols=8 Identities=50% Similarity=0.683 Sum_probs=5.5
Q ss_pred CcchHHHHH
Q 016232 1 MKKSLRFFL 9 (393)
Q Consensus 1 ~~~~~~~~~ 9 (393)
|+ |+.+|+
T Consensus 1 Ma-SK~~ll 8 (95)
T PF07172_consen 1 MA-SKAFLL 8 (95)
T ss_pred Cc-hhHHHH
Confidence 88 777555
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=65.46 E-value=7 Score=35.51 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=26.4
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEec
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGL 89 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV 89 (393)
+|.|+..|+++||+.+.+|.-+.++.+.||+|.=-|
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 688999999999999999999999999999986433
No 23
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.76 E-value=21 Score=36.65 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=30.4
Q ss_pred HHhCCCCCcceEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhh
Q 016232 261 EDAGFKKMEVIVTETGWASRGDSNE---AAATVDNARTYNYNLRKRLAKK 307 (393)
Q Consensus 261 ~~~g~~~~~vvItETGWPS~G~~~~---~~as~~na~~y~~~li~~~~~~ 307 (393)
.-.|++..+|+.+ |||.|.-.+ ...|.+.++..+.++++.++++
T Consensus 141 ~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 141 HDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred hhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 3456777888876 999998643 2356666677777777777543
No 24
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=63.68 E-value=78 Score=36.89 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=57.9
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHHcCCCCEEEEecC--ChHHHHHHhcCCCEEEEecCCCc--------hhhhhh
Q 016232 36 YGINYGRIAD---NIPSPDEV---AVLLRASKIKNVRIYDA--DHSVLKAFSGTGLELVVGLPNGL--------VKEMSA 99 (393)
Q Consensus 36 ~GinYg~~~~---n~ps~~~v---~~llk~~~~~~VRiY~~--d~~vL~A~~~~gikV~lGV~n~~--------~~~~a~ 99 (393)
.|+|+-.... ...+++++ +++||+.|++.||+-.. ++..+.+|-..||-|+--+..+. ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 4787643211 22355554 45778999999999753 36789999999998876432110 001111
Q ss_pred cH---HHHHHHHHHhhhccCCCceEEEEeecccccc
Q 016232 100 NE---SHAMDWVKENVQNFLPKTKICGIAVGNEVLG 132 (393)
Q Consensus 100 ~~---~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~ 132 (393)
++ ++..+-+++.|.+..-...|..=++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 11 1222335556665543356888899999843
No 25
>PLN02998 beta-glucosidase
Probab=59.53 E-value=14 Score=39.48 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCCEEEEec------------CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 016232 51 DEVAVLLRASKIKNVRIYD------------AD-------HSVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY~------------~d-------~~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
+|.+++||+.|++.-|+== .| .+++.++.+.||+-+|.++--+++.
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 5668899999998887641 23 2689999999999999988655544
No 26
>PLN02814 beta-glucosidase
Probab=57.55 E-value=29 Score=37.18 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCCEEEEec------------CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 016232 51 DEVAVLLRASKIKNVRIYD------------AD-------HSVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY~------------~d-------~~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
+|.+++||..|++.-|+== .| .+++.++.+.||+-+|.++--+++.
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 5678899999988887531 23 2689999999999999988656554
No 27
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=57.18 E-value=1.5e+02 Score=26.80 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHcCCCCEEEE----------ecC------------C--hHHHHHHhcCCCEEEEecCCCc-hhhhhhcHHH---
Q 016232 52 EVAVLLRASKIKNVRI----------YDA------------D--HSVLKAFSGTGLELVVGLPNGL-VKEMSANESH--- 103 (393)
Q Consensus 52 ~v~~llk~~~~~~VRi----------Y~~------------d--~~vL~A~~~~gikV~lGV~n~~-~~~~a~~~~~--- 103 (393)
+..+.|+..||+.|=+ |.+ | ..+|+++.+.||||++|++.+. --+ ..+.+.
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~~ 102 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEAE 102 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHHH
Confidence 4566778888877622 111 1 2578899999999999999652 101 111111
Q ss_pred HHHHHHHhhh-ccCCCceEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHhC
Q 016232 104 AMDWVKENVQ-NFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKL 156 (393)
Q Consensus 104 A~~Wv~~~v~-~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~ 156 (393)
-..-+.+.+. .|.....+.+-=+-.|.=... ...+++.+.+.+.|++.
T Consensus 103 ~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 103 RNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEecccCCcc-----cchHHHHHHHHHHHHHh
Confidence 0111222232 232123466666666764321 22355556666666654
No 28
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=55.12 E-value=1.6e+02 Score=34.50 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=58.7
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHHcCCCCEEEEecC--ChHHHHHHhcCCCEEEEecCCCc-----hhhhhhcH-
Q 016232 36 YGINYGRIAD---NIPSPDEV---AVLLRASKIKNVRIYDA--DHSVLKAFSGTGLELVVGLPNGL-----VKEMSANE- 101 (393)
Q Consensus 36 ~GinYg~~~~---n~ps~~~v---~~llk~~~~~~VRiY~~--d~~vL~A~~~~gikV~lGV~n~~-----~~~~a~~~- 101 (393)
.|+|+-.... ...+++++ ++++|..|++.||+-.. ++..+..|-..||-|+--++.+. ...+..++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 4788753221 23466655 45778899999999542 47899999999998886543211 00111111
Q ss_pred --HHHHHHHHHhhhccCCCceEEEEeeccccc
Q 016232 102 --SHAMDWVKENVQNFLPKTKICGIAVGNEVL 131 (393)
Q Consensus 102 --~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl 131 (393)
++..+-+++.|.+......|..=++|||.-
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 222333555565554335688999999974
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=53.83 E-value=25 Score=35.15 Aligned_cols=222 Identities=12% Similarity=0.103 Sum_probs=110.8
Q ss_pred HHHHHHhcCCCEEE--EecCCCchhhhhh------------cHHHHHHHHHHhhhccCCC-ceEEEEeeccccccCCC--
Q 016232 73 SVLKAFSGTGLELV--VGLPNGLVKEMSA------------NESHAMDWVKENVQNFLPK-TKICGIAVGNEVLGGAD-- 135 (393)
Q Consensus 73 ~vL~A~~~~gikV~--lGV~n~~~~~~a~------------~~~~A~~Wv~~~v~~~~~~-~~I~~I~VGNEvl~~~~-- 135 (393)
.++.-+++.||+|- .=||-...+.... -.+..+++|.+-+..| .+ .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 46777778898875 3345433222111 1234455666655555 43 47999999999997632
Q ss_pred ----cchHH------HHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhhcCCC
Q 016232 136 ----SELWG------ALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSP 205 (393)
Q Consensus 136 ----~~~~~------~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp 205 (393)
.+... .+..+.+-.|++..++ +.-.-+ .+++. +.-...+..++..|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a------~L~~ND-y~~~~-----------~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPNA------KLFYND-YNIES-----------PAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTTS------EEEEEE-SSTTS-----------THHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCCc------EEEecc-ccccc-----------hHHHHHHHHHHHHHHhCCCc
Confidence 11222 3444555566554422 221111 11111 11124566777777655444
Q ss_pred ceeecCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeccCCCCCCCC
Q 016232 206 FCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDSNE 285 (393)
Q Consensus 206 ~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~g~~~~~vvItETGWPS~G~~~~ 285 (393)
+ |=-=+| +.+.... . .+.+..+|++...-+++|.|||--=........
T Consensus 204 I-------------------dgIG~Q---~H~~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 204 I-------------------DGIGLQ---SHFDAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD 251 (320)
T ss_dssp S--------------------EEEEE---EEEETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC
T ss_pred c-------------------ceechh---hccCCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc
Confidence 2 111111 1221111 1 333444455555557999999986544443211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCceeEEEEEcccCC-CCCCCCCCCceeeecCCCCeeEe
Q 016232 286 AAATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNEN-QKPGPTSERNFGLFKPDGSIAYD 352 (393)
Q Consensus 286 ~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe~-wK~g~~~E~~wGlf~~d~~~ky~ 352 (393)
....+.|+.+++++++.+.+.. |..-..+.+-.+.|.. |.+... -.+=+||+.|.+||..
T Consensus 252 -~~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 252 -AEEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred -hHHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 2446778899999998886532 0012345555666643 665311 2233799999999853
No 30
>PLN02849 beta-glucosidase
Probab=53.70 E-value=26 Score=37.42 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCEEEEe-------c-----CCh-------HHHHHHhcCCCEEEEecCCCchhh
Q 016232 51 DEVAVLLRASKIKNVRIY-------D-----ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY-------~-----~d~-------~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
+|.+++||+.|++.-|+= = .|+ +++.++.+.||+-+|.++--+++.
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 466889999998888753 1 232 689999999999999987655544
No 31
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=53.45 E-value=91 Score=30.80 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHHHHhc--CCCEEE--E--ecCCC-chhhhhhcHHHHHHHHHHhhhccCCCceEEEEeecc-ccccC-CCcchHHHHH
Q 016232 73 SVLKAFSG--TGLELV--V--GLPNG-LVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGN-EVLGG-ADSELWGALL 143 (393)
Q Consensus 73 ~vL~A~~~--~gikV~--l--GV~n~-~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGN-Evl~~-~~~~~~~~Lv 143 (393)
..+.++++ .++||+ + |=|.. ....++++++.-+++++. +..+...-.+.+|-+=- |-... +.+..-..++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 34456654 579988 4 43543 245566666544444433 32222112344443321 11110 1112346678
Q ss_pred HHHHHHHHHHHhCCC
Q 016232 144 GAVKNVYNSIKKLHL 158 (393)
Q Consensus 144 ~ai~~v~~aL~~~gl 158 (393)
..|+++|++|++.|+
T Consensus 134 ~~l~el~~~l~~~~~ 148 (318)
T cd02876 134 QLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHhhcCC
Confidence 899999999988765
No 32
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=53.17 E-value=39 Score=32.26 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCEEEEecCCCc---hhhhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHHHHHHHH
Q 016232 73 SVLKAFSGTGLELVVGLPNGL---VKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNV 149 (393)
Q Consensus 73 ~vL~A~~~~gikV~lGV~n~~---~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v 149 (393)
..++++++.|+||++.|.... ...+.+++...+++++. +..+...-.+.+|-+==|-... . .......++++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~---~-~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV---T-FGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc---c-HhHHHHHHHHH
Confidence 456777778999998876532 12244454444443332 2222111124445444454321 1 34567789999
Q ss_pred HHHHHhCCC
Q 016232 150 YNSIKKLHL 158 (393)
Q Consensus 150 ~~aL~~~gl 158 (393)
|++|++.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987664
No 33
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=52.81 E-value=38 Score=33.99 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=41.8
Q ss_pred HHHhc--CCCEEEEecC--CC---chhhhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccC--CCcchHHHHHHHH
Q 016232 76 KAFSG--TGLELVVGLP--NG---LVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGG--ADSELWGALLGAV 146 (393)
Q Consensus 76 ~A~~~--~gikV~lGV~--n~---~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~--~~~~~~~~Lv~ai 146 (393)
.++++ .++||++.|- .. ....++++++.-+..++. +..+...-.+.+|-+==|-... ........++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34454 5899997774 32 234455555443333332 2221111124444443333221 1122356788999
Q ss_pred HHHHHHHHhCC
Q 016232 147 KNVYNSIKKLH 157 (393)
Q Consensus 147 ~~v~~aL~~~g 157 (393)
+++|++|++.+
T Consensus 141 ~~lr~~l~~~~ 151 (362)
T cd02872 141 KELREAFEPEA 151 (362)
T ss_pred HHHHHHHHhhC
Confidence 99999999873
No 34
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=51.57 E-value=1.7e+02 Score=31.30 Aligned_cols=66 Identities=23% Similarity=0.198 Sum_probs=43.0
Q ss_pred HHHHHHhhhccCC-CceEEEEeeccccccC------CCcc--hHHHHHHHHHH-HHHHHHhCCCCCCeEEEe-ceec
Q 016232 105 MDWVKENVQNFLP-KTKICGIAVGNEVLGG------ADSE--LWGALLGAVKN-VYNSIKKLHLDDVVQITT-AHSQ 170 (393)
Q Consensus 105 ~~Wv~~~v~~~~~-~~~I~~I~VGNEvl~~------~~~~--~~~~Lv~ai~~-v~~aL~~~gl~~~I~VsT-~~~~ 170 (393)
...+.+-|+.|-. +..|.+|++.||+... ++.. .+++....|++ +.-+|++++++.++|+-. .|..
T Consensus 207 A~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 207 ADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp HHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 3456666766643 4789999999999852 2211 36777788876 999999999966677644 4443
No 35
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=50.21 E-value=1.8e+02 Score=29.44 Aligned_cols=178 Identities=20% Similarity=0.251 Sum_probs=66.4
Q ss_pred HHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccC-----CCceEEEEeeccccccCCC--cchHHHHHHHH
Q 016232 74 VLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFL-----PKTKICGIAVGNEVLGGAD--SELWGALLGAV 146 (393)
Q Consensus 74 vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~-----~~~~I~~I~VGNEvl~~~~--~~~~~~Lv~ai 146 (393)
+-+-+.++|++|+.|+..-.-..........-.|=-+|-+... .+-+|.+-=.|||.-..+- .-.+.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 3344558999999998742111101112333567666654321 1235777788999653221 12367777778
Q ss_pred HHHHHHHHhC---CCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhh-cCCCceeecCccccccCCCCc
Q 016232 147 KNVYNSIKKL---HLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQ-IGSPFCLNVYPFLAYMSDPEN 222 (393)
Q Consensus 147 ~~v~~aL~~~---gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~-~~sp~~vNiyPyf~~~~~~~~ 222 (393)
..+|+.|+.. .+.+ -+|.-|... |.. +-+.+.++-... .-+.+.-|.|+. ....++.
T Consensus 194 ~~Lr~il~~iy~~~~~~-P~v~gP~~~-------------~d~---~w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~- 254 (319)
T PF03662_consen 194 IQLRKILNEIYKNALPG-PLVVGPGGF-------------FDA---DWLKEFLKASGPGVVDAVTWHHYNL-GSGRDPA- 254 (319)
T ss_dssp ---HHHHHHHHHH-TT----EEEEEES-------------S-G---GGHHHHHHHTTTT--SEEEEEEEEE---TT-TT-
T ss_pred HHHHHHHHHHHhcCCCC-CeEECCCCC-------------CCH---HHHHHHHHhcCCCccCEEEEEecCC-CCCchHH-
Confidence 8888877653 1111 234444321 111 223333333322 134566677742 2222221
Q ss_pred cccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhCCCCCcceEeeeccCCCCCCC
Q 016232 223 IDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDSN 284 (393)
Q Consensus 223 i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~g~~~~~vvItETGWPS~G~~~ 284 (393)
. .+ . +.+| .|-+.+..++..+...+++.+ |+++++++|||=...|+..
T Consensus 255 l-~~-~-------~l~p----~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG~~ 302 (319)
T PF03662_consen 255 L-IE-D-------FLNP----SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGGAP 302 (319)
T ss_dssp --HH-H-------HTS------HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT--T
T ss_pred H-HH-H-------hcCh----hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCCCC
Confidence 0 11 1 1122 121222333333433344343 7899999999977766643
No 36
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=49.72 E-value=44 Score=35.89 Aligned_cols=84 Identities=14% Similarity=0.275 Sum_probs=54.0
Q ss_pred hCCCCCcceEeeeccCCCCCCCC--C-----CCCHHHHHHHHHHHHHHHHhhCCCCCCCCCceeEEEEEcccC-CCCCCC
Q 016232 263 AGFKKMEVIVTETGWASRGDSNE--A-----AATVDNARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFNE-NQKPGP 334 (393)
Q Consensus 263 ~g~~~~~vvItETGWPS~G~~~~--~-----~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FDe-~wK~g~ 334 (393)
-.|+|.+|.|+|-|-+...+... . ..=.+..+.|++.+.+++.. .|. ...-+|..++-|- .|..|
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G- 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG- 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC-
Confidence 35889999999999998765421 1 12344556666666666542 231 1235888898873 45554
Q ss_pred CCCCceeeecC------CCCeeEeee
Q 016232 335 TSERNFGLFKP------DGSIAYDIG 354 (393)
Q Consensus 335 ~~E~~wGlf~~------d~~~ky~l~ 354 (393)
..-.||||+- .|.||-...
T Consensus 476 -y~~RFGlyyVDf~d~l~R~pK~Sa~ 500 (524)
T KOG0626|consen 476 -YKVRFGLYYVDFKDPLKRYPKLSAK 500 (524)
T ss_pred -cccccccEEEeCCCCCcCCchhHHH
Confidence 7889999984 456665443
No 37
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=49.68 E-value=26 Score=32.47 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.9
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEE
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~ 86 (393)
+|.|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998877889999999987
No 38
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=49.57 E-value=64 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=24.2
Q ss_pred HhCCCCCcceEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHH
Q 016232 262 DAGFKKMEVIVTETGWASRGDSNE---AAATVDNARTYNYNLRKRLA 305 (393)
Q Consensus 262 ~~g~~~~~vvItETGWPS~G~~~~---~~as~~na~~y~~~li~~~~ 305 (393)
.+++++.+|+. .|||.|...+ ...+.......+..++..+.
T Consensus 44 ~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 44 DLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 45667654444 6999998543 22344455555566666554
No 39
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=48.59 E-value=27 Score=32.52 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=30.2
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEE
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~ 86 (393)
+|.|+..|++++|+.+.++.-..++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998877889999999997
No 40
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=47.76 E-value=92 Score=32.28 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 016232 139 WGALLGAVKNVYNSIKKLHL 158 (393)
Q Consensus 139 ~~~Lv~ai~~v~~aL~~~gl 158 (393)
...++..|+.+|++|+..++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 46688899999999987765
No 41
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=45.29 E-value=66 Score=31.71 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=43.0
Q ss_pred HHHHhc--CCCEEEEecCC----CchhhhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHHHHHHH
Q 016232 75 LKAFSG--TGLELVVGLPN----GLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKN 148 (393)
Q Consensus 75 L~A~~~--~gikV~lGV~n----~~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~ 148 (393)
+.++++ .++||++.|.. +....++++.+.-++.++ +|..+...-...+|-+==|..... ......++..|++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~-~~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGAR-GDDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCC-ccHHHHHHHHHHH
Confidence 455654 48999987764 223445545433333322 232222112356666644443221 1224568889999
Q ss_pred HHHHHHhC
Q 016232 149 VYNSIKKL 156 (393)
Q Consensus 149 v~~aL~~~ 156 (393)
+|++|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 42
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=45.10 E-value=3.5e+02 Score=27.74 Aligned_cols=140 Identities=11% Similarity=0.128 Sum_probs=70.8
Q ss_pred CCCHHHHHHHH---HcCCCCEEEEec-------CC-------hHHHHHHhcC-CCE-EEEecCCCchhhhhhcHHHHHHH
Q 016232 47 IPSPDEVAVLL---RASKIKNVRIYD-------AD-------HSVLKAFSGT-GLE-LVVGLPNGLVKEMSANESHAMDW 107 (393)
Q Consensus 47 ~ps~~~v~~ll---k~~~~~~VRiY~-------~d-------~~vL~A~~~~-gik-V~lGV~n~~~~~~a~~~~~A~~W 107 (393)
.-++++|++.+ ...|++.|.+.+ .| .++++++.+. |++ +-++--.. ..+ +.+..+ .
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~--~~ell~-~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDP--EDI--DEELLE-A 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCCh--hhC--CHHHHH-H
Confidence 45788887654 346899998754 11 2566666643 442 44442111 111 122211 1
Q ss_pred HHHhhhccCCCceEEEEeeccccccC------CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCc
Q 016232 108 VKENVQNFLPKTKICGIAVGNEVLGG------ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSS 181 (393)
Q Consensus 108 v~~~v~~~~~~~~I~~I~VGNEvl~~------~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~ 181 (393)
++++ + .....|.+|=|-... +......+...+++.+|+.. .| +.+++.. +. ++|
T Consensus 241 m~~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~----Iv-G~P--- 300 (414)
T TIGR01579 241 IASE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDI----IV-GFP--- 300 (414)
T ss_pred HHhc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeE----EE-ECC---
Confidence 2211 1 012355565554321 11223567777777777632 22 4455432 21 233
Q ss_pred ccccccchhhhHHHHHHHhhcCCCceeecCccccc
Q 016232 182 CIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAY 216 (393)
Q Consensus 182 g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 216 (393)
.+..+.+.+.++|+.+.. +-.+++|||--+
T Consensus 301 ----gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 ----GESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred ----CCCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 122466788899998765 456788887543
No 43
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.13 E-value=27 Score=35.88 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=29.2
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEE
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~ 86 (393)
+|+|+..|+++||+. .||.-+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 689999999999999 78888889999999986
No 44
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=43.00 E-value=67 Score=34.09 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCCEEEEe---------c----CCh-------HHHHHHhcCCCEEEEecCCCchhh
Q 016232 50 PDEVAVLLRASKIKNVRIY---------D----ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 50 ~~~v~~llk~~~~~~VRiY---------~----~d~-------~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
-++.+++||..|++..|+= + .|+ +++.++.+.||+-+|.++--+++.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 3567889999998888753 1 232 689999999999999998656543
No 45
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.49 E-value=32 Score=35.37 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=29.6
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEE
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~ 86 (393)
+|+|+..|+++||+.. ||.-+.++.+.||+|.
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVT 359 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEE
Confidence 6889999999999999 8988899999999987
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=41.45 E-value=63 Score=28.20 Aligned_cols=43 Identities=14% Similarity=0.331 Sum_probs=32.6
Q ss_pred CHHHHHHHHHcCCCCEEEEecC---------------------C--hHHHHHHhcCCCEEEEecCC
Q 016232 49 SPDEVAVLLRASKIKNVRIYDA---------------------D--HSVLKAFSGTGLELVVGLPN 91 (393)
Q Consensus 49 s~~~v~~llk~~~~~~VRiY~~---------------------d--~~vL~A~~~~gikV~lGV~n 91 (393)
+|++.++.||..+++.|-+|.- | .++++|+++.||+|++-+-.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 4678888888888888888641 1 36788999999999876654
No 47
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=39.78 E-value=2.8e+02 Score=24.80 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHcC--CCCEEEEecCCh-------HHHHHHhcCCCEEEE
Q 016232 47 IPSPDEVAVLLRAS--KIKNVRIYDADH-------SVLKAFSGTGLELVV 87 (393)
Q Consensus 47 ~ps~~~v~~llk~~--~~~~VRiY~~d~-------~vL~A~~~~gikV~l 87 (393)
..+++++++.++.. .++.|.+.+-+| ++++.+++.|+++.+
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i 95 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKL 95 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEE
Confidence 35788888887652 368898887442 456777778877654
No 48
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.10 E-value=3.2e+02 Score=25.70 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=53.9
Q ss_pred CHHHHHHHHHcCCCCEEEEecCC---hHHHHHHhc--CCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCceEEE
Q 016232 49 SPDEVAVLLRASKIKNVRIYDAD---HSVLKAFSG--TGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICG 123 (393)
Q Consensus 49 s~~~v~~llk~~~~~~VRiY~~d---~~vL~A~~~--~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~ 123 (393)
|++|+.+.++ .|.+.|++|-++ ++-++++++ .+++++. ..++ +.+.+..|++ ..+.+
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI-----~~~N~~~~l~---------aGa~~ 179 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV-----NLDNVKDWFA---------AGADA 179 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC-----CHHHHHHHHH---------CCCcE
Confidence 7888887765 589999999654 567777774 3466552 2222 2344555665 24578
Q ss_pred EeeccccccCCCcchHHHHHHHHHHHHHHHH
Q 016232 124 IAVGNEVLGGADSELWGALLGAVKNVYNSIK 154 (393)
Q Consensus 124 I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~ 154 (393)
|.||...+........+.+-...++++++++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 8899887643111124556666666666554
No 49
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=38.50 E-value=75 Score=26.79 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCEEEEec--CC---hHHHHHHhcCCCEEE
Q 016232 52 EVAVLLRASKIKNVRIYD--AD---HSVLKAFSGTGLELV 86 (393)
Q Consensus 52 ~v~~llk~~~~~~VRiY~--~d---~~vL~A~~~~gikV~ 86 (393)
++.+.++.+|++.|+++= .. ..+|++++..|+++.
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 445666778999999983 33 479999999999865
No 50
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=38.37 E-value=2.4e+02 Score=28.57 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=48.4
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhh
Q 016232 34 GTYGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQ 113 (393)
Q Consensus 34 ~~~GinYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~ 113 (393)
..+|||.-...++ |..++.++.+...+.+.|=+..-+|...+.+++.|++|+.-|+. ...|+.+.+.
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~--- 122 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLEN--- 122 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHc---
Confidence 4578887544322 33445566666666777755545565578889999999987773 3344444432
Q ss_pred ccCCCceEEEEeecccc
Q 016232 114 NFLPKTKICGIAVGNEV 130 (393)
Q Consensus 114 ~~~~~~~I~~I~VGNEv 130 (393)
..+ .-|+-|.|.
T Consensus 123 ---GaD--~vVaqG~EA 134 (320)
T cd04743 123 ---GAR--KFIFEGREC 134 (320)
T ss_pred ---CCC--EEEEecCcC
Confidence 223 347789998
No 51
>PLN03059 beta-galactosidase; Provisional
Probab=38.04 E-value=5.9e+02 Score=29.29 Aligned_cols=114 Identities=13% Similarity=0.067 Sum_probs=68.3
Q ss_pred HHHHHHHcCCCCEEEEec------CC------------hHHHHHHhcCCCEEEEec---------------CCCchhh--
Q 016232 52 EVAVLLRASKIKNVRIYD------AD------------HSVLKAFSGTGLELVVGL---------------PNGLVKE-- 96 (393)
Q Consensus 52 ~v~~llk~~~~~~VRiY~------~d------------~~vL~A~~~~gikV~lGV---------------~n~~~~~-- 96 (393)
+..+.+|+.|++.|-+|- .. ..-++.+++.||.|+|=. |.-..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 556777889999999993 11 245777889999998732 2100011
Q ss_pred h-hhc---HHHHHHHHHHhhhc-----c-C-CCceEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCeEEE
Q 016232 97 M-SAN---ESHAMDWVKENVQN-----F-L-PKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVVQIT 165 (393)
Q Consensus 97 ~-a~~---~~~A~~Wv~~~v~~-----~-~-~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~Vs 165 (393)
+ ..+ .++.++|+..-+.. . + .+..|..+=|-||-=.- +...-..=-.||+.+++.++++|++ |+.-
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~-~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~ 219 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPV-EWEIGAPGKAYTKWAADMAVKLGTG--VPWV 219 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccce-ecccCcchHHHHHHHHHHHHHcCCC--cceE
Confidence 0 112 24566776543321 1 1 23679999999995211 0000011257899999999999985 6666
Q ss_pred ece
Q 016232 166 TAH 168 (393)
Q Consensus 166 T~~ 168 (393)
|.+
T Consensus 220 t~d 222 (840)
T PLN03059 220 MCK 222 (840)
T ss_pred ECC
Confidence 654
No 52
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.83 E-value=2e+02 Score=27.44 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHcCCCCEEEEecCC--------hHHHHHHhc-CCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCC
Q 016232 48 PSPDEVAVLLRASKIKNVRIYDAD--------HSVLKAFSG-TGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPK 118 (393)
Q Consensus 48 ps~~~v~~llk~~~~~~VRiY~~d--------~~vL~A~~~-~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~ 118 (393)
.+|-++++.++..|++.+=+.|.| .++++.+++ .-.+|.+|=-.. +.+.++.++.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~--------- 93 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLS--------- 93 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHH---------
Confidence 378899999988999999999866 257777765 445788864432 2334455554
Q ss_pred ceEEEEeeccccccC
Q 016232 119 TKICGIAVGNEVLGG 133 (393)
Q Consensus 119 ~~I~~I~VGNEvl~~ 133 (393)
..+..|+||.|.+.+
T Consensus 94 ~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 94 LDVNALVFSTIVFTN 108 (232)
T ss_pred CCCCEEEECchhhCC
Confidence 134567899999865
No 53
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.57 E-value=2.1e+02 Score=27.26 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHc-CCCCEEEEecCC---------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccC
Q 016232 48 PSPDEVAVLLRA-SKIKNVRIYDAD---------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFL 116 (393)
Q Consensus 48 ps~~~v~~llk~-~~~~~VRiY~~d---------~~vL~A~~-~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~ 116 (393)
.+|.++++.+.. .|++.+=+.|.| .++++.++ ..+++|.+|=-... .+.++.++.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs-------~e~v~~~l~------- 96 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRT-------KSQIMDYFA------- 96 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCC-------HHHHHHHHH-------
Confidence 477888888877 789999999865 25776665 57899999855432 333444443
Q ss_pred CCceEEEEeeccccccC
Q 016232 117 PKTKICGIAVGNEVLGG 133 (393)
Q Consensus 117 ~~~~I~~I~VGNEvl~~ 133 (393)
.-+..|+||+|.+.+
T Consensus 97 --~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 97 --AGINYCIVGTKGIQD 111 (234)
T ss_pred --CCCCEEEECchHhcC
Confidence 124567899999865
No 54
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=37.51 E-value=70 Score=33.97 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCCEEEEec-------------CCh-------HHHHHHhcCCCEEEEecCCCchhh
Q 016232 51 DEVAVLLRASKIKNVRIYD-------------ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY~-------------~d~-------~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
+|.+++||+.|++..|+== .|+ +++.++.+.||+-+|.++--+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 5778899999988887641 132 688999999999999997656554
No 55
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=37.31 E-value=74 Score=33.66 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCEEEEe-------c-----CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 016232 51 DEVAVLLRASKIKNVRIY-------D-----AD-------HSVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY-------~-----~d-------~~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
++.+++|+..|++..|+= = .| .+++.++.+.||+-+|.++--+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 567889999988887753 1 13 2689999999999999998766554
No 56
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=37.01 E-value=52 Score=30.45 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=29.8
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEE
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~ 86 (393)
+|.|+..|++++|+.+.++.-..++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999988877889999999987
No 57
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.39 E-value=2.8e+02 Score=28.84 Aligned_cols=138 Identities=12% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHH---cCCCCEEEEec-------CC-------hHHHHHHhcCCC-EEEEecCCCchhhhhhcHHHHHHHH
Q 016232 47 IPSPDEVAVLLR---ASKIKNVRIYD-------AD-------HSVLKAFSGTGL-ELVVGLPNGLVKEMSANESHAMDWV 108 (393)
Q Consensus 47 ~ps~~~v~~llk---~~~~~~VRiY~-------~d-------~~vL~A~~~~gi-kV~lGV~n~~~~~~a~~~~~A~~Wv 108 (393)
.-++++|++.++ ..|++.|.+.+ .+ .++++.+...|+ .+-++..+.. .+ +.+.++
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~--~i--~~ell~--- 238 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPM--NF--TDDVIA--- 238 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcc--cC--CHHHHH---
Confidence 346788876543 46787777643 22 256777766665 3444332211 12 122111
Q ss_pred HHhhhccCCCceEEEEeeccccccC------CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcc
Q 016232 109 KENVQNFLPKTKICGIAVGNEVLGG------ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSC 182 (393)
Q Consensus 109 ~~~v~~~~~~~~I~~I~VGNEvl~~------~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g 182 (393)
.+... + ..+..+.+|=|-... +.....++.+.+++.+|++ +. .+.++|.. +. ++|
T Consensus 239 --~l~~~-~-~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~----~~--~i~i~~d~----Iv-G~P---- 299 (440)
T PRK14334 239 --AMAET-P-AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREA----LP--DVVLSTDI----IV-GFP---- 299 (440)
T ss_pred --HHHhc-C-cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHh----CC--CcEEEEeE----EE-ECC----
Confidence 12211 1 124566666444321 1123356777777777755 32 24455432 21 233
Q ss_pred cccccchhhhHHHHHHHhhcCCCceeecCccc
Q 016232 183 IFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFL 214 (393)
Q Consensus 183 ~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf 214 (393)
.+..+.+.+.++|+.+.+ +-.+++|+|-
T Consensus 300 ---gEt~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 300 ---GETEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred ---CCCHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 122466778889987654 4457777763
No 58
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=35.96 E-value=3.8e+02 Score=25.24 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHcCCCCEEEEecCC-----------hHHHHHHhcCCCEEEEecCCCc-----hhhhhhcHHHHHHHHHHh
Q 016232 48 PSPDEVAVLLRASKIKNVRIYDAD-----------HSVLKAFSGTGLELVVGLPNGL-----VKEMSANESHAMDWVKEN 111 (393)
Q Consensus 48 ps~~~v~~llk~~~~~~VRiY~~d-----------~~vL~A~~~~gikV~lGV~n~~-----~~~~a~~~~~A~~Wv~~~ 111 (393)
|+. ...+.+|+.|++.|=.|=++ +.=++++.+.|++++. |++.. ....+.....|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 444 55677788888777667322 2346778889999764 23211 112222334454445555
Q ss_pred hhccCCCceEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHhCCCC
Q 016232 112 VQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLD 159 (393)
Q Consensus 112 v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl~ 159 (393)
..--.|...+.++.|-...... +....++|+++-+.++|...|+.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~---~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDD---EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcc---hhHHHHHHHHHHHHHHHHhcCCc
Confidence 5444576667788887665432 34678999999999999999874
No 59
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=35.36 E-value=1.1e+02 Score=28.80 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHcCCCCEEEEecCC---------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccC
Q 016232 47 IPSPDEVAVLLRASKIKNVRIYDAD---------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFL 116 (393)
Q Consensus 47 ~ps~~~v~~llk~~~~~~VRiY~~d---------~~vL~A~~-~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~ 116 (393)
..+|-++++.+...+++.+=+-|.| .+++..++ ..+++|.+|=... +.+.++.|+..
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr-------s~ed~~~ll~~------ 94 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR-------SIEDAERLLDA------ 94 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--------SHHHHHHHHHT------
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC-------cHHHHHHHHHh------
Confidence 3478899998888999999888754 13555554 6799999996643 34455555542
Q ss_pred CCceEEEEeeccccccC
Q 016232 117 PKTKICGIAVGNEVLGG 133 (393)
Q Consensus 117 ~~~~I~~I~VGNEvl~~ 133 (393)
-+..|++|.|.+.+
T Consensus 95 ---Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 95 ---GADRVVIGTEALED 108 (229)
T ss_dssp ---T-SEEEESHHHHHC
T ss_pred ---CCCEEEeChHHhhc
Confidence 24579999999875
No 60
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.21 E-value=53 Score=33.46 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=30.4
Q ss_pred HHHHHHcCCCCEEEEecCC-hHHHHHHhcCCCEEE
Q 016232 53 VAVLLRASKIKNVRIYDAD-HSVLKAFSGTGLELV 86 (393)
Q Consensus 53 v~~llk~~~~~~VRiY~~d-~~vL~A~~~~gikV~ 86 (393)
..|+|+..|+++||+..-+ |.-..++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3688999999999999999 888889999999986
No 61
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.09 E-value=56 Score=33.86 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=32.2
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV~ 90 (393)
.|.|+..|+++||+...+|.-+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888999999999973333
No 62
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=33.97 E-value=1.3e+02 Score=30.15 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=28.6
Q ss_pred HHHHcCCCCEEEEecCC-hHHHHHHhcCCCEEEEecCCCc
Q 016232 55 VLLRASKIKNVRIYDAD-HSVLKAFSGTGLELVVGLPNGL 93 (393)
Q Consensus 55 ~llk~~~~~~VRiY~~d-~~vL~A~~~~gikV~lGV~n~~ 93 (393)
+.|+..|++. .+-..| .-..+++++-.+.++++.|...
T Consensus 52 ~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~ 90 (302)
T COG2113 52 KILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPT 90 (302)
T ss_pred HHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCC
Confidence 4667888755 566666 4567888988999999999754
No 63
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=33.90 E-value=84 Score=33.38 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCCEEEEe-------c------CCh-------HHHHHHhcCCCEEEEecCCCchh
Q 016232 50 PDEVAVLLRASKIKNVRIY-------D------ADH-------SVLKAFSGTGLELVVGLPNGLVK 95 (393)
Q Consensus 50 ~~~v~~llk~~~~~~VRiY-------~------~d~-------~vL~A~~~~gikV~lGV~n~~~~ 95 (393)
-++.+++||..|++..|+= - .|+ +++.++.+.||+.+|.++=-+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 3577889999888877753 1 232 68999999999999999644443
No 64
>PRK08815 GTP cyclohydrolase; Provisional
Probab=33.68 E-value=57 Score=33.66 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=31.8
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV~ 90 (393)
.|.|+..|+++||+.+.+|.-+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888899999999973333
No 65
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.61 E-value=4.4e+02 Score=28.30 Aligned_cols=139 Identities=11% Similarity=0.169 Sum_probs=71.3
Q ss_pred CCCHHHHHHHH---HcCCCCEEEEecCC---------------hHHHHHHhcCCCE-EEEecCCCchhhhhhcHHHHHHH
Q 016232 47 IPSPDEVAVLL---RASKIKNVRIYDAD---------------HSVLKAFSGTGLE-LVVGLPNGLVKEMSANESHAMDW 107 (393)
Q Consensus 47 ~ps~~~v~~ll---k~~~~~~VRiY~~d---------------~~vL~A~~~~gik-V~lGV~n~~~~~~a~~~~~A~~W 107 (393)
.-++++|++.+ ...|++.|.+.+.| .++++++.+.+++ +-++..+.+ .+ +.+
T Consensus 240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~--~i--~de----- 310 (509)
T PRK14327 240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPR--DF--DDH----- 310 (509)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcc--cC--CHH-----
Confidence 44678887544 44688888886532 2466777665652 333322111 12 111
Q ss_pred HHHhhhccCCCceEEEEeeccccc----cC--CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCc
Q 016232 108 VKENVQNFLPKTKICGIAVGNEVL----GG--ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSS 181 (393)
Q Consensus 108 v~~~v~~~~~~~~I~~I~VGNEvl----~~--~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~ 181 (393)
+.+.+... + ..+..|.+|=|-. .+ +......+...+++.+|+++ ..+.++|.. +. +||
T Consensus 311 li~~m~~~-g-~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~------p~i~i~tdi----Iv-GfP--- 374 (509)
T PRK14327 311 LIEVLAKG-G-NLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI------PNVALTTDI----IV-GFP--- 374 (509)
T ss_pred HHHHHHhc-C-CccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCcEEeeeE----EE-eCC---
Confidence 11122221 1 1245677765543 21 11234677788888887752 125455442 22 344
Q ss_pred ccccccchhhhHHHHHHHhhcCCCceeecCcccc
Q 016232 182 CIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLA 215 (393)
Q Consensus 182 g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~ 215 (393)
.+..+.+.+.++|+.+.+. -.+++|+|--
T Consensus 375 ----gET~edf~~Tl~~v~~l~~-d~~~~f~ysp 403 (509)
T PRK14327 375 ----NETDEQFEETLSLYREVGF-DHAYTFIYSP 403 (509)
T ss_pred ----CCCHHHHHHHHHHHHHcCC-CeEEEeeeeC
Confidence 1224567788888876543 3467777643
No 66
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=33.52 E-value=1.9e+02 Score=30.05 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCEEEEecCCCch----------------hhhhhc-HHHHHHHHHHhhhccC-CCceEEEEeeccccccCC
Q 016232 73 SVLKAFSGTGLELVVGLPNGLV----------------KEMSAN-ESHAMDWVKENVQNFL-PKTKICGIAVGNEVLGGA 134 (393)
Q Consensus 73 ~vL~A~~~~gikV~lGV~n~~~----------------~~~a~~-~~~A~~Wv~~~v~~~~-~~~~I~~I~VGNEvl~~~ 134 (393)
..|+++++.|++.+++--|+.- ..+..+ ..+-...+.+-++-|- -+..|++|.-=||+-..+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 5889999999998887654320 001111 1111222322222220 137899999999998653
Q ss_pred C-----c--chHHHHHHHHHHHHHHHHhCCCCCCeEEEecee
Q 016232 135 D-----S--ELWGALLGAVKNVYNSIKKLHLDDVVQITTAHS 169 (393)
Q Consensus 135 ~-----~--~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~ 169 (393)
. + -..++....|+.++++|+++||..+ |..+++
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 1 1 1467888999999999999999754 555554
No 67
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.23 E-value=58 Score=33.88 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=30.5
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEE
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~ 86 (393)
.|.|+..|+++||+..-+|.-+.++.+.||+|.
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 678999999999999999988889999999997
No 68
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.08 E-value=3.2e+02 Score=25.21 Aligned_cols=128 Identities=9% Similarity=0.142 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCCEEEEecCC---------hHHHHHHhcCCCEEEEe--cCCCchhhhhhcHHHHHHHHHHhhhccCCCc
Q 016232 51 DEVAVLLRASKIKNVRIYDAD---------HSVLKAFSGTGLELVVG--LPNGLVKEMSANESHAMDWVKENVQNFLPKT 119 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY~~d---------~~vL~A~~~~gikV~lG--V~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~ 119 (393)
.++++.|..+|.++|=+.+.. ....++++..|+++... .+.....+.......+.+|++.+ +
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-- 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P-- 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--
Confidence 445566666677776554422 12345667788876211 11111111222234455555432 1
Q ss_pred eEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHhCCC--CCCeEEEeceecccccccCCCCcccccccchhhhHHHHH
Q 016232 120 KICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHL--DDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLD 197 (393)
Q Consensus 120 ~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl--~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ld 197 (393)
.+++|.+.|+.+.. . +.++|++.|+ +++|.|.+-+.......-..|.......+....-..+++
T Consensus 171 ~~~ai~~~~d~~a~----------g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~ 236 (265)
T cd01543 171 KPVGIFACTDARAR----------Q----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAK 236 (265)
T ss_pred CCcEEEecChHHHH----------H----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHH
Confidence 25667766655321 1 2234455565 456776665543322222224344444433333334444
Q ss_pred HH
Q 016232 198 FF 199 (393)
Q Consensus 198 fL 199 (393)
.|
T Consensus 237 ~l 238 (265)
T cd01543 237 LL 238 (265)
T ss_pred HH
Confidence 44
No 69
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=32.84 E-value=62 Score=25.76 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=31.9
Q ss_pred cCCCceEEEEeeccc-cccCC-------CcchHHHHHHHHHHHHHHHHhCCCCCCeEEEec
Q 016232 115 FLPKTKICGIAVGNE-VLGGA-------DSELWGALLGAVKNVYNSIKKLHLDDVVQITTA 167 (393)
Q Consensus 115 ~~~~~~I~~I~VGNE-vl~~~-------~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~ 167 (393)
+.-+.+|-+-=|+|| ..... .......+.+.|+++-+.+|+.+-. .+||+.
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~--~pvt~g 63 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS--QPVTSG 63 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT--S-EE--
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC--CcEEee
Confidence 334478999999999 55211 1123578899999999999988754 566654
No 70
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=32.68 E-value=2.6e+02 Score=26.59 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=48.3
Q ss_pred CHHHHHHHHHcCCCCEEEEecCC--------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCc
Q 016232 49 SPDEVAVLLRASKIKNVRIYDAD--------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKT 119 (393)
Q Consensus 49 s~~~v~~llk~~~~~~VRiY~~d--------~~vL~A~~-~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~ 119 (393)
+|.++++.+.+.|++.+=+.|.| .++++.+. ..+++|.+|=-... .+.++.++. .
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs-------~edv~~~l~------~--- 96 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRD-------DESLEAALA------T--- 96 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCC-------HHHHHHHHH------C---
Confidence 78889999988999999999876 25777665 56899998754432 233344443 1
Q ss_pred eEEEEeeccccccC
Q 016232 120 KICGIAVGNEVLGG 133 (393)
Q Consensus 120 ~I~~I~VGNEvl~~ 133 (393)
-...+.+|.+.+.+
T Consensus 97 Ga~kvviGs~~l~~ 110 (241)
T PRK14024 97 GCARVNIGTAALEN 110 (241)
T ss_pred CCCEEEECchHhCC
Confidence 23467889999864
No 71
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=32.45 E-value=5.3e+02 Score=25.92 Aligned_cols=131 Identities=9% Similarity=0.094 Sum_probs=77.1
Q ss_pred ccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCccccccCCCCccccccccccCCCc-------cccCCCcccchh
Q 016232 175 NSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQG-------IDDSKTKLHYDN 247 (393)
Q Consensus 175 ~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~-------~vd~~~~~~y~n 247 (393)
..+|...+.+.++..+.+++++|.+-++++.+.+-+.-- +.......+..-. ..|+.. .....|.-.-..
T Consensus 62 ~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~~~-~~ps~~~~~~~~~~~~~mt~~eI~~ 138 (343)
T cd04734 62 SPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWLPP-LAPSAVPEPRHRAVPKAMEEEDIEE 138 (343)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCCcc-cCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 346666778887767899999999999999999887532 1110000000000 000000 001111111234
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcceEeeecc-------CCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhCCC
Q 016232 248 MLDAQIDAAYAALEDAGFKKMEVIVTETGW-------ASR-GDSNEAAATVDNARTYNYNLRKRLAKKKGT 310 (393)
Q Consensus 248 lfda~vDa~~~a~~~~g~~~~~vvItETGW-------PS~-G~~~~~~as~~na~~y~~~li~~~~~~~Gt 310 (393)
+.+...+|...| +++|+.+++|.-+. |+ |.. -...+-+.+++|-.+|...+++.+++..|.
T Consensus 139 ii~~f~~AA~ra-~~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 139 IIAAFADAARRC-QAGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 455555565555 34799999998765 64 422 222335678999999999999999877764
No 72
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.31 E-value=3.5e+02 Score=27.84 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCccccc--ccchhhhHHHHHHHhhcCCCceeecCccccc
Q 016232 139 WGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFK--EGVDQFMKPLLDFFSQIGSPFCLNVYPFLAY 216 (393)
Q Consensus 139 ~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~--~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 216 (393)
..++...++++|+. +|++.+-..-.-+.. ..+.|. .+.-|.+.++++.|.+.+--++++++|+...
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~----~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQD----GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSB----TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred HHHHHHHHHHHHHc--------CCCccceeccccccc----cccccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 55666666666643 366666542222222 122332 2223568899999999999999999998754
Q ss_pred cCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHhC----CCCCcceEeeeccCCCCCCCCCCCCHHH
Q 016232 217 MSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDAG----FKKMEVIVTETGWASRGDSNEAAATVDN 292 (393)
Q Consensus 217 ~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~g----~~~~~vvItETGWPS~G~~~~~~as~~n 292 (393)
... +|. .++... +.| .++-...+++. ||-.+.. ..-+-.+
T Consensus 110 ~~~------~~~-------------------~~~~~~--------~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp~ 153 (441)
T PF01055_consen 110 DSP------DYE-------------------NYDEAK--------EKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNPE 153 (441)
T ss_dssp TTT------B-H-------------------HHHHHH--------HTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSHH
T ss_pred CCC------cch-------------------hhhhHh--------hcCceeecccCCcccccc-cCCcccc--cCCCChh
Confidence 221 111 122211 122 12335677777 8844321 2234455
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCceeEEEEEccc
Q 016232 293 ARTYNYNLRKRLAKKKGTPLRPKNVVKAYVFAIFN 327 (393)
Q Consensus 293 a~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~FD 327 (393)
++.++.+.++.+.+..| ++.++..+=+
T Consensus 154 a~~w~~~~~~~~~~~~G--------vdg~w~D~~E 180 (441)
T PF01055_consen 154 ARDWWKEQLKELLDDYG--------VDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHHHHHTTST---------SEEEEESTT
T ss_pred HHHHHHHHHHHHHhccC--------CceEEeecCC
Confidence 78888777777754334 8999988733
No 73
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=32.23 E-value=61 Score=34.30 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=30.5
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEE
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELV 86 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~ 86 (393)
.|+|+..|+++||+..-+|.-+.++.+.||+|.
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVv 405 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVV 405 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 678999999999999999988899999999987
No 74
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.13 E-value=2.4e+02 Score=27.13 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHcCCCCEEEEecCC---------hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCC
Q 016232 48 PSPDEVAVLLRASKIKNVRIYDAD---------HSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPK 118 (393)
Q Consensus 48 ps~~~v~~llk~~~~~~VRiY~~d---------~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~ 118 (393)
.+|-++++.++..|++.+=+.|.| .++++.+++.=+.|.+|=-.. +.+.++.|+..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIR-------SLDYAEKLRKL-------- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCC-------CHHHHHHHHHC--------
Confidence 478899999998999999999866 257777765336777764432 33445555541
Q ss_pred ceEEEEeeccccccC
Q 016232 119 TKICGIAVGNEVLGG 133 (393)
Q Consensus 119 ~~I~~I~VGNEvl~~ 133 (393)
.+..|+||.+.+.+
T Consensus 95 -Ga~rvvigT~a~~~ 108 (241)
T PRK14114 95 -GYRRQIVSSKVLED 108 (241)
T ss_pred -CCCEEEECchhhCC
Confidence 24567899999865
No 75
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=32.13 E-value=61 Score=35.13 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=32.4
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV~ 90 (393)
+|+|+..|+++||+..-+|.=+.++++.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999999999999999873333
No 76
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=30.86 E-value=2.9e+02 Score=25.49 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred HhCCCCCcceEee-eccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhhCC
Q 016232 262 DAGFKKMEVIVTE-TGWASRGDSN-EAAATVDNARTYNYNLRKRLAKKKG 309 (393)
Q Consensus 262 ~~g~~~~~vvItE-TGWPS~G~~~-~~~as~~na~~y~~~li~~~~~~~G 309 (393)
+.++|++||++.| .++|.. ..+ ......+......+..+..++ +.|
T Consensus 88 R~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~-~~g 135 (178)
T PF14606_consen 88 REAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLR-KEG 135 (178)
T ss_dssp HTT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHH-HTT
T ss_pred HHhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 3568999999999 455544 433 245677777788888888775 345
No 77
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=30.62 E-value=1.1e+02 Score=26.63 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEecC
Q 016232 52 EVAVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLP 90 (393)
Q Consensus 52 ~v~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV~ 90 (393)
.+.++|+.+|++.|=+..--+..+.+|++.||+|..+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 678999999999997777789999999999999999977
No 78
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=29.64 E-value=1.2e+02 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCCEEEEe--c--------CC---hHHHHHHhcCCCEEE
Q 016232 51 DEVAVLLRASKIKNVRIY--D--------AD---HSVLKAFSGTGLELV 86 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~~~~gikV~ 86 (393)
+++.+..+.+|++.|+++ + .. ...|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445566677899988887 3 22 469999999999975
No 79
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.94 E-value=7.2e+02 Score=26.32 Aligned_cols=127 Identities=8% Similarity=0.133 Sum_probs=66.8
Q ss_pred CCCHHHHHHHH----HcCCCCEEEEecCC----h----HHHHHHhcCC-CEEEEecCCCchhhhhhcHHHHHHHHHHhhh
Q 016232 47 IPSPDEVAVLL----RASKIKNVRIYDAD----H----SVLKAFSGTG-LELVVGLPNGLVKEMSANESHAMDWVKENVQ 113 (393)
Q Consensus 47 ~ps~~~v~~ll----k~~~~~~VRiY~~d----~----~vL~A~~~~g-ikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~ 113 (393)
.-++++|++.+ +..|++.+-+.|.+ . ++++++.+.| +++..++... ...+..+.+..+.+ .
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r-~~~i~~d~ell~~l-----~ 294 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTR-VTDIVRDADILHLY-----R 294 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecc-cccccCCHHHHHHH-----H
Confidence 34778887654 34688888777743 2 5777777776 7665554431 11222222222221 1
Q ss_pred ccCCCceEEEEeeccccccC------CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCccccccc
Q 016232 114 NFLPKTKICGIAVGNEVLGG------ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEG 187 (393)
Q Consensus 114 ~~~~~~~I~~I~VGNEvl~~------~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~ 187 (393)
. ..+..|.+|=|.... +......+...+++.+|+ +|+ .+.... ++ .+| .+
T Consensus 295 ~----aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~----~Gi----~~~~~~---I~--G~P-------~e 350 (497)
T TIGR02026 295 R----AGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQ----HNI----LSEAQF---IT--GFE-------NE 350 (497)
T ss_pred H----hCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHH----CCC----cEEEEE---EE--ECC-------CC
Confidence 1 246788888887542 112345666666666554 454 232211 12 122 12
Q ss_pred chhhhHHHHHHHhhcC
Q 016232 188 VDQFMKPLLDFFSQIG 203 (393)
Q Consensus 188 ~~~~l~~~ldfL~~~~ 203 (393)
-.+.+.+.++|+...+
T Consensus 351 t~e~~~~t~~~~~~l~ 366 (497)
T TIGR02026 351 TDETFEETYRQLLDWD 366 (497)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 2356777888877644
No 80
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.41 E-value=1.5e+02 Score=27.37 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhH-HHHHHHhhcCCCceeec
Q 016232 144 GAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMK-PLLDFFSQIGSPFCLNV 210 (393)
Q Consensus 144 ~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~-~~ldfL~~~~sp~~vNi 210 (393)
.+++.+.+.+...|+.+ |++.+.... +.| + .+... ++.+.+.+.+-|+++|+
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~-------~-~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGG------FDP-------D-DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETT------CCT-------T-SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hHHHHHHHhccccceee-eEecCCCCc------ccc-------c-cHHHHHHHHHHHHhhccceeeec
Confidence 56777888888888864 776653311 111 1 13334 88888988998888775
No 81
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=27.96 E-value=1.1e+02 Score=25.79 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCEEEEe--cCC---hHHHHHHhcCCCEEEE
Q 016232 52 EVAVLLRASKIKNVRIY--DAD---HSVLKAFSGTGLELVV 87 (393)
Q Consensus 52 ~v~~llk~~~~~~VRiY--~~d---~~vL~A~~~~gikV~l 87 (393)
++.+.++..|++.|+++ +.. ..++++++.+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34456677899999988 333 4799999999998653
No 82
>CHL00041 rps11 ribosomal protein S11
Probab=27.74 E-value=1.4e+02 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCCEEEEec--CC---hHHHHHHhcCCCEEE
Q 016232 52 EVAVLLRASKIKNVRIYD--AD---HSVLKAFSGTGLELV 86 (393)
Q Consensus 52 ~v~~llk~~~~~~VRiY~--~d---~~vL~A~~~~gikV~ 86 (393)
++.+.++..|++.|+++= .. ..++++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 344566678999988883 33 478999999999875
No 83
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.36 E-value=6.6e+02 Score=26.54 Aligned_cols=58 Identities=10% Similarity=0.235 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCccc
Q 016232 138 LWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFL 214 (393)
Q Consensus 138 ~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf 214 (393)
+..+.+..++.+|++.....++.+|-| +|| .+..+...+.+||+.+.. +=.+|++||=
T Consensus 278 t~e~~~~~i~k~R~~~Pd~~i~tDiIV-----------GFP-------gETeedFe~tl~lv~e~~-fd~~~~F~YS 335 (437)
T COG0621 278 TVEEYLEIIEKLRAARPDIAISTDIIV-----------GFP-------GETEEDFEETLDLVEEVR-FDRLHVFKYS 335 (437)
T ss_pred CHHHHHHHHHHHHHhCCCceEeccEEE-----------ECC-------CCCHHHHHHHHHHHHHhC-CCEEeeeecC
Confidence 367778888888877654444333333 344 111244556777776654 3458888884
No 84
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=27.20 E-value=3.1e+02 Score=25.55 Aligned_cols=97 Identities=12% Similarity=0.211 Sum_probs=58.7
Q ss_pred CHHHHHHHHHcCCCCEEEEe-c-CC--hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCC-ceEEE
Q 016232 49 SPDEVAVLLRASKIKNVRIY-D-AD--HSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPK-TKICG 123 (393)
Q Consensus 49 s~~~v~~llk~~~~~~VRiY-~-~d--~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~-~~I~~ 123 (393)
.|++.++.++..|.+.|=+- . ++ .++++.+++.|+++-|.+..+. .+. .+.+|.+. +.|..
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~------------~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PVE------------ELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GG------------GGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cch------------HHHHHhhhcCEEEE
Confidence 56777777777677766332 2 23 3789999999999888876432 111 13344443 34444
Q ss_pred EeeccccccCCCcchHHHHHHHHHHHHHHHHhCCCCCCe
Q 016232 124 IAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLDDVV 162 (393)
Q Consensus 124 I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I 162 (393)
.+| |+=.+ .+.+.+..+..|+.+|+.+.+.|++-.|
T Consensus 134 MsV--~PG~~-Gq~f~~~~~~KI~~l~~~~~~~~~~~~I 169 (201)
T PF00834_consen 134 MSV--EPGFG-GQKFIPEVLEKIRELRKLIPENGLDFEI 169 (201)
T ss_dssp ESS---TTTS-SB--HGGHHHHHHHHHHHHHHHTCGSEE
T ss_pred EEe--cCCCC-cccccHHHHHHHHHHHHHHHhcCCceEE
Confidence 444 33122 3567788899999999999998875433
No 85
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=26.87 E-value=96 Score=29.10 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=33.9
Q ss_pred HHHHHcCCCCEEEEecCChHHHHHHhcCCCEEEEecCCC
Q 016232 54 AVLLRASKIKNVRIYDADHSVLKAFSGTGLELVVGLPNG 92 (393)
Q Consensus 54 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gikV~lGV~n~ 92 (393)
+|+|+..|+++||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578889999999999999988889999999998777654
No 86
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=26.54 E-value=1.2e+02 Score=26.09 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHcCCCCEEEEecCC-----hHHHHHHhcCCCEEEEecCC
Q 016232 47 IPSPDEVAVLLRASKIKNVRIYDAD-----HSVLKAFSGTGLELVVGLPN 91 (393)
Q Consensus 47 ~ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~~gikV~lGV~n 91 (393)
..+++++++..++.|++.|=+=|-+ +.-.+.++..||++++|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 3488999999999999988777743 35566677899999999875
No 87
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.25 E-value=5.2e+02 Score=27.60 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCcc
Q 016232 137 ELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPF 213 (393)
Q Consensus 137 ~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPy 213 (393)
....+...+++.+|++. . .+.|++.. +. .|| .+..+.+.+.++|+....- -.+++++|
T Consensus 289 ~t~~~~~~~v~~lr~~~----~--~i~i~~~~----Iv-GfP-------gET~edf~~Tl~~i~~~~~-~~~~~f~~ 346 (502)
T PRK14326 289 YRSERFLGILEKVRAAM----P--DAAITTDI----IV-GFP-------GETEEDFQATLDVVREARF-SSAFTFQY 346 (502)
T ss_pred CCHHHHHHHHHHHHHhC----C--CCeEEEEE----EE-ECC-------CCCHHHHHHHHHHHHHcCC-CEEEEEee
Confidence 34667777777777642 1 25566542 22 343 2224667889999876543 24566665
No 88
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=26.06 E-value=1e+02 Score=31.16 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHHHHHHHHHHH
Q 016232 73 SVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNS 152 (393)
Q Consensus 73 ~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~a 152 (393)
.||+++...|-.+.+|=.-.+ .+ +++.|..|....+..++ ..|.+|+--|.-... .+| ++
T Consensus 176 ~VLkp~idsGkik~~Ge~~~d--~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag----------GaI----~a 235 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQWTD--GW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG----------GAI----AA 235 (341)
T ss_pred HHHHHHhhCCceEEeeecccc--cc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH----------HHH----HH
Confidence 689988887744447743222 34 56778888888887776 448888776653322 111 46
Q ss_pred HHhCCCCCCeEEEec
Q 016232 153 IKKLHLDDVVQITTA 167 (393)
Q Consensus 153 L~~~gl~~~I~VsT~ 167 (393)
|++.||+++++||=-
T Consensus 236 L~a~Gl~g~vpVsGQ 250 (341)
T COG4213 236 LKAQGLAGKVPVSGQ 250 (341)
T ss_pred HHhcccCCCCcccCc
Confidence 788899988887653
No 89
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=26.02 E-value=1.5e+02 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCEEEEe--c--------CC---hHHHHHHhcCCCEEE
Q 016232 51 DEVAVLLRASKIKNVRIY--D--------AD---HSVLKAFSGTGLELV 86 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~~~~gikV~ 86 (393)
+++.+.++.+|++.|+++ + .. ..+|++++..|++|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 345566677899998888 3 23 369999999999965
No 90
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=25.89 E-value=3.4e+02 Score=30.98 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=47.8
Q ss_pred HHHHHHcCCCCEEEEec-C-ChHHHHHHhcCCCEEEEecCCC--chhhhhhcHHHHHHHHHHhhhccCCCceEEEEeecc
Q 016232 53 VAVLLRASKIKNVRIYD-A-DHSVLKAFSGTGLELVVGLPNG--LVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGN 128 (393)
Q Consensus 53 v~~llk~~~~~~VRiY~-~-d~~vL~A~~~~gikV~lGV~n~--~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGN 128 (393)
.+++||..+++.||+.. . ++.-++-|...||=|+-=.... ..+.--.-.+.+..-++..|.+..-.-.|..=++||
T Consensus 326 dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gN 405 (808)
T COG3250 326 DLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGN 405 (808)
T ss_pred HHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHHHHHHHHHHhccCCCcEEEEeccc
Confidence 35567789999999995 2 3678888888999876432211 111000112334444556665432223477889999
Q ss_pred cccc
Q 016232 129 EVLG 132 (393)
Q Consensus 129 Evl~ 132 (393)
|.-.
T Consensus 406 E~~~ 409 (808)
T COG3250 406 ESGH 409 (808)
T ss_pred cccC
Confidence 9854
No 91
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.68 E-value=7.6e+02 Score=25.53 Aligned_cols=139 Identities=11% Similarity=0.150 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHH---HcCCCCEEEEecCC--------------hHHHHHHhc-CCC-EEEEecCCCchhhhhhcHHHHHH
Q 016232 46 NIPSPDEVAVLL---RASKIKNVRIYDAD--------------HSVLKAFSG-TGL-ELVVGLPNGLVKEMSANESHAMD 106 (393)
Q Consensus 46 n~ps~~~v~~ll---k~~~~~~VRiY~~d--------------~~vL~A~~~-~gi-kV~lGV~n~~~~~~a~~~~~A~~ 106 (393)
..-++++|++.+ ...|++.|.+.+.| .++|+++++ .|+ .+-++..+.+ .+ +.+..+
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~i--~~ell~- 225 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPK--DI--SQKLID- 225 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChh--hc--CHHHHH-
Confidence 355778886544 34689888888643 135555554 232 3434332111 12 111111
Q ss_pred HHHHhhhccCCCceEEEEeeccccc----cC--CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCC
Q 016232 107 WVKENVQNFLPKTKICGIAVGNEVL----GG--ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPS 180 (393)
Q Consensus 107 Wv~~~v~~~~~~~~I~~I~VGNEvl----~~--~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS 180 (393)
.+..+ +. ....+.+|=|-. .+ +......+...+++.+|+++ + .+.++|.. +. +||
T Consensus 226 ----~l~~~-~~-~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----p-gi~i~~d~----Iv-GfP-- 286 (418)
T PRK14336 226 ----AMAHL-PK-VCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAM-----P-DISLQTDL----IV-GFP-- 286 (418)
T ss_pred ----HHHhc-Cc-cCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhC-----C-CCEEEEEE----EE-ECC--
Confidence 12211 11 234555554432 11 11234677788888887653 2 24455542 22 344
Q ss_pred cccccccchhhhHHHHHHHhhcCCCceeecCccc
Q 016232 181 SCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFL 214 (393)
Q Consensus 181 ~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf 214 (393)
.+..+.+.+.++|+.+.. +-.+|+++|-
T Consensus 287 -----GET~edf~~tl~fi~~~~-~~~~~v~~ys 314 (418)
T PRK14336 287 -----SETEEQFNQSYKLMADIG-YDAIHVAAYS 314 (418)
T ss_pred -----CCCHHHHHHHHHHHHhcC-CCEEEeeecC
Confidence 122466788889988754 3357777775
No 92
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.57 E-value=1.4e+02 Score=27.18 Aligned_cols=59 Identities=19% Similarity=0.414 Sum_probs=37.8
Q ss_pred EEEEecCC-hHHHHHH-----h-cCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCceEEEEeecccc
Q 016232 64 NVRIYDAD-HSVLKAF-----S-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEV 130 (393)
Q Consensus 64 ~VRiY~~d-~~vL~A~-----~-~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEv 130 (393)
.+.+||+. +++++.+ + ..|+-+|--+.|++ +.++.++|+. .|..| .+.++.-|.|||.-
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee------Sf~svqdw~t-qIkty-sw~naqvilvgnKC 136 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNSVQDWIT-QIKTY-SWDNAQVILVGNKC 136 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH------HHHHHHHHHH-Hheee-eccCceEEEEeccc
Confidence 45678876 3444332 2 35666777777754 3345567764 45555 66789999999976
No 93
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.43 E-value=1.7e+02 Score=27.73 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=49.8
Q ss_pred ccCCceeEEecCCCCCCCCHHHHHHHHHcCCCCEEEEecCC-----hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHH
Q 016232 31 AFTGTYGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDAD-----HSVLKAFSGTGLELVVGLPNGLVKEMSANESHAM 105 (393)
Q Consensus 31 ~~~~~~GinYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~ 105 (393)
++...+||.|-...-.++. .--++++||+- ..+..+....=+.+++..-..+-.++ ....
T Consensus 40 ~~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~ 104 (207)
T KOG0078|consen 40 SFISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIR 104 (207)
T ss_pred CccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHH
Confidence 4456788888654434443 12477889864 35777665433444444333222233 3445
Q ss_pred HHHHHhhhccCCCceEEEEeecccc
Q 016232 106 DWVKENVQNFLPKTKICGIAVGNEV 130 (393)
Q Consensus 106 ~Wv~~~v~~~~~~~~I~~I~VGNEv 130 (393)
.|++ +|+.+.++ .|.-|.|||-.
T Consensus 105 ~W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 105 NWIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHHH-HHHhhCCC-CCcEEEeeccc
Confidence 6875 68887665 68899999986
No 94
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.31 E-value=4.9e+02 Score=27.32 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=69.4
Q ss_pred CCCHHHHHHHH---HcCCCCEEEEecCC--------------hHHHHHHhc-CCC-EEEEecCCCchhhhhhcHHHHHHH
Q 016232 47 IPSPDEVAVLL---RASKIKNVRIYDAD--------------HSVLKAFSG-TGL-ELVVGLPNGLVKEMSANESHAMDW 107 (393)
Q Consensus 47 ~ps~~~v~~ll---k~~~~~~VRiY~~d--------------~~vL~A~~~-~gi-kV~lGV~n~~~~~~a~~~~~A~~W 107 (393)
.-++++|++.+ ...|++.|.+.+.+ .++++++++ .|+ ++-++.-+.. .+ +.+..
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~--~i--~~ell--- 255 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPA--WM--TDRLI--- 255 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChh--hc--CHHHH---
Confidence 34678876544 34689999888621 246777766 355 3433322211 11 11111
Q ss_pred HHHhhhccCCCceEEEEeecccc----ccC--CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCc
Q 016232 108 VKENVQNFLPKTKICGIAVGNEV----LGG--ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSS 181 (393)
Q Consensus 108 v~~~v~~~~~~~~I~~I~VGNEv----l~~--~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~ 181 (393)
+.+... + ..+..+.+|=|. +.+ +......+.+.+++.+|+.. ..+.++|.. +. ++|
T Consensus 256 --~~l~~~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~------pgi~i~~d~----Iv-G~P--- 317 (459)
T PRK14338 256 --HAVARL-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI------PDVSLTTDI----IV-GHP--- 317 (459)
T ss_pred --HHHhcc-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC------CCCEEEEEE----EE-ECC---
Confidence 122221 1 124455554333 221 11234677777777777642 124455432 21 233
Q ss_pred ccccccchhhhHHHHHHHhhcCCCceeecCccc
Q 016232 182 CIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFL 214 (393)
Q Consensus 182 g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf 214 (393)
.+-.+.+.+.++|+.+.+ +-.+++++|-
T Consensus 318 ----gET~ed~~~ti~~l~~l~-~~~v~i~~ys 345 (459)
T PRK14338 318 ----GETEEQFQRTYDLLEEIR-FDKVHIAAYS 345 (459)
T ss_pred ----CCCHHHHHHHHHHHHHcC-CCEeEEEecC
Confidence 122466788899988755 3346777764
No 95
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=25.31 E-value=4.7e+02 Score=26.96 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCCCEEEEecC----------Ch------------HHHHHHhcCCCEEEEecCCC-------c----hhhh
Q 016232 51 DEVAVLLRASKIKNVRIYDA----------DH------------SVLKAFSGTGLELVVGLPNG-------L----VKEM 97 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY~~----------d~------------~vL~A~~~~gikV~lGV~n~-------~----~~~~ 97 (393)
++....+|+.||+.||+.-| +| ++++.+.+.||.|++-+-.- + ...+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56677889999999999843 32 35677788999999874321 1 1111
Q ss_pred hh---c-HHHHHHHHHHhhhc-cCCCceEEEEeeccccccCCCcchHHHH-HHHHHHHHHHHHhC
Q 016232 98 SA---N-ESHAMDWVKENVQN-FLPKTKICGIAVGNEVLGGADSELWGAL-LGAVKNVYNSIKKL 156 (393)
Q Consensus 98 a~---~-~~~A~~Wv~~~v~~-~~~~~~I~~I~VGNEvl~~~~~~~~~~L-v~ai~~v~~aL~~~ 156 (393)
.. + +...+.| ..|.. |-....|.++-+=||+..-........- -++...|++++...
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 11 0 1222222 22332 3334678888888999830001122333 37777777665544
No 96
>PRK05309 30S ribosomal protein S11; Validated
Probab=24.14 E-value=1.8e+02 Score=25.32 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCCEEEEec--CC---hHHHHHHhcCCCEEE
Q 016232 52 EVAVLLRASKIKNVRIYD--AD---HSVLKAFSGTGLELV 86 (393)
Q Consensus 52 ~v~~llk~~~~~~VRiY~--~d---~~vL~A~~~~gikV~ 86 (393)
.+.+.++..|++.|+++= .. ..+|.+++..|++|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345566778999999993 33 479999999999865
No 97
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=23.88 E-value=5.3e+02 Score=23.12 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=25.4
Q ss_pred CCEEEEecCC---h----HHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHh
Q 016232 62 IKNVRIYDAD---H----SVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKEN 111 (393)
Q Consensus 62 ~~~VRiY~~d---~----~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~ 111 (393)
..-|-.|.+. | ..|..+++.|++| +||..++ +..++.+|++++
T Consensus 70 ~vvv~FwatwC~~C~~e~p~l~~l~~~~~~v-i~v~~~~------~~~~~~~~~~~~ 119 (185)
T PRK15412 70 PVLLNVWATWCPTCRAEHQYLNQLSAQGIRV-VGMNYKD------DRQKAISWLKEL 119 (185)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHcCCEE-EEEECCC------CHHHHHHHHHHc
Confidence 4566666533 1 2456677778875 7886543 344566677664
No 98
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.78 E-value=8.6e+02 Score=25.48 Aligned_cols=195 Identities=12% Similarity=0.174 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHH---HcCCCCEEEEecCC-----------hHHHHHHhc-CCC-EEEEecCCCchhhhhhcHHHHHHHHH
Q 016232 46 NIPSPDEVAVLL---RASKIKNVRIYDAD-----------HSVLKAFSG-TGL-ELVVGLPNGLVKEMSANESHAMDWVK 109 (393)
Q Consensus 46 n~ps~~~v~~ll---k~~~~~~VRiY~~d-----------~~vL~A~~~-~gi-kV~lGV~n~~~~~~a~~~~~A~~Wv~ 109 (393)
..-++++|++.+ ...|++.|.+.+-| ++.|+++.+ .++ .+-++..+.. .+ +.. +.
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~~--~~e-----ll 251 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPK--DF--PDH-----LL 251 (449)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcc--cC--CHH-----HH
Confidence 345678886544 34689999888633 245555543 232 2333332211 12 111 11
Q ss_pred HhhhccCCCceEEEEeec-----cccccC-CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCccc
Q 016232 110 ENVQNFLPKTKICGIAVG-----NEVLGG-ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCI 183 (393)
Q Consensus 110 ~~v~~~~~~~~I~~I~VG-----NEvl~~-~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~ 183 (393)
+.+... +. ...+|.+| +++|.+ +......+...+++.+|++.. .+.++|. ++. +||
T Consensus 252 ~~m~~~-~~-~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td----~Iv-GfP----- 313 (449)
T PRK14332 252 SLMAKN-PR-FCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTD----IIV-GFP----- 313 (449)
T ss_pred HHHHhC-CC-ccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEE----EEe-eCC-----
Confidence 112211 21 24677777 444422 112346788888888887632 2445543 222 344
Q ss_pred ccccchhhhHHHHHHHhhcCCCceeecCccccccCCCCccccccccccCCCccccCCCcccchhHHHHHHHHHHHHHHHh
Q 016232 184 FKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAYMSDPENIDINYALFQSTQGIDDSKTKLHYDNMLDAQIDAAYAALEDA 263 (393)
Q Consensus 184 F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~~~~i~ld~Alf~~~~~~vd~~~~~~y~nlfda~vDa~~~a~~~~ 263 (393)
.+..+.+.+.++|+.+.+-. .+++|+|--....+ .+..+. + .+-+.....++..+.+.|-.......++.
T Consensus 314 --gET~edf~~tl~~v~~l~~~-~~~~f~ys~~~GT~-----a~~~~~-~-~v~~~~~~~R~~~l~~~~~~~~~~~~~~~ 383 (449)
T PRK14332 314 --NETEEEFEDTLAVVREVQFD-MAFMFKYSEREGTM-----AKRKLP-D-NVPEEVKSARLTKLVDLQTSISHEQNRAR 383 (449)
T ss_pred --CCCHHHHHHHHHHHHhCCCC-EEEEEEecCCCCCh-----hHHhCc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22246677888998766543 57888875432222 111111 1 11111112344445444444333334433
Q ss_pred CCCCCcceEeeecc
Q 016232 264 GFKKMEVIVTETGW 277 (393)
Q Consensus 264 g~~~~~vvItETGW 277 (393)
-....+|+|-|.+.
T Consensus 384 vG~~~~vlve~~~~ 397 (449)
T PRK14332 384 IGRVYSILIENTSR 397 (449)
T ss_pred cCCEEEEEEEeccC
Confidence 33457778865443
No 99
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=23.57 E-value=3.7e+02 Score=25.41 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=47.8
Q ss_pred CHHHHHHHHHcCCCCEEEEecCC--------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCc
Q 016232 49 SPDEVAVLLRASKIKNVRIYDAD--------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKT 119 (393)
Q Consensus 49 s~~~v~~llk~~~~~~VRiY~~d--------~~vL~A~~-~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~ 119 (393)
+|.++++.++..|++.+=+.|.| ..+++.+. ..+++|.+|--... .+.++.++. .
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-------~edv~~~l~------~--- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-------LENAQEWLK------R--- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-------HHHHHHHHH------c---
Confidence 68899999998899999888865 24666665 57899998865433 223333332 1
Q ss_pred eEEEEeeccccccC
Q 016232 120 KICGIAVGNEVLGG 133 (393)
Q Consensus 120 ~I~~I~VGNEvl~~ 133 (393)
-...|++|.|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 24567899999865
No 100
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.47 E-value=8.4e+02 Score=25.28 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCccc
Q 016232 138 LWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFL 214 (393)
Q Consensus 138 ~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf 214 (393)
...+...+++.+|+.+ . .+.++|.. +. .+| .+..+.+.+.++|+.+.. +-.+++++|-
T Consensus 280 ~~~~~~~~i~~lr~~~-----~-~i~i~~d~----Iv-G~P-------gET~ed~~~tl~~i~~l~-~~~~~~~~~s 337 (439)
T PRK14328 280 TREYYLELVEKIKSNI-----P-DVAITTDI----IV-GFP-------GETEEDFEETLDLVKEVR-YDSAFTFIYS 337 (439)
T ss_pred CHHHHHHHHHHHHHhC-----C-CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHhcC-CCcccceEec
Confidence 4677777777777652 1 24454432 21 343 122466778889987654 3456777764
No 101
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.33 E-value=7.4e+02 Score=25.64 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCccc
Q 016232 138 LWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFL 214 (393)
Q Consensus 138 ~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf 214 (393)
...+...+++.+|++.. .+.++|. ++. +|| .+..+.+.+.++|+..... -.+++|+|-
T Consensus 263 t~~~~~~~v~~lr~~~p------~i~i~~d----~Iv-GfP-------gETeedf~~Tl~fl~~l~~-~~~~~f~~s 320 (420)
T PRK14339 263 TKEWFLNRAEKLRALVP------EVSISTD----IIV-GFP-------GESDKDFEDTMDVLEKVRF-EQIFSFKYS 320 (420)
T ss_pred CHHHHHHHHHHHHHHCC------CCEEEEE----EEE-ECC-------CCCHHHHHHHHHHHHhcCC-CEEeeEecC
Confidence 36677788888876531 2456663 222 344 2224667888999876543 236777653
No 102
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.25 E-value=8.4e+02 Score=25.20 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=43.7
Q ss_pred EEEEeeccccccC------CCcchHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHH
Q 016232 121 ICGIAVGNEVLGG------ADSELWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKP 194 (393)
Q Consensus 121 I~~I~VGNEvl~~------~~~~~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~ 194 (393)
...+.+|=|-... +......+...+++.+|+.+ ..+.|+|.. +- +|| .+..+.+.+
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~----Iv-GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSDI----IV-GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEEE----EE-ECC-------CCCHHHHHH
Confidence 4567777665421 11223567777777777652 125566542 21 343 222466788
Q ss_pred HHHHHhhcCCCceeecCccccc
Q 016232 195 LLDFFSQIGSPFCLNVYPFLAY 216 (393)
Q Consensus 195 ~ldfL~~~~sp~~vNiyPyf~~ 216 (393)
.++|+.+.+-. .+|+++|--.
T Consensus 312 tl~fi~~~~~~-~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQFE-RLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcCCC-EEeeeeccCC
Confidence 89999876643 5677777543
No 103
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.06 E-value=1.8e+02 Score=30.48 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 016232 139 WGALLGAVKNVYNSIKKLHLD 159 (393)
Q Consensus 139 ~~~Lv~ai~~v~~aL~~~gl~ 159 (393)
..+.+.-++.+.+.|.++|+.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 456677778888999999984
No 104
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.96 E-value=3.3e+02 Score=22.90 Aligned_cols=121 Identities=10% Similarity=0.190 Sum_probs=58.9
Q ss_pred HHHHcCCCCEEEEecCC----------hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCceEEEE
Q 016232 55 VLLRASKIKNVRIYDAD----------HSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGI 124 (393)
Q Consensus 55 ~llk~~~~~~VRiY~~d----------~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I 124 (393)
+-|.++|.++|-+-... .....++++.|++...-.......... .......|+++. .| ++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----dai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cEE
Confidence 44556688888777632 135677888999854333221111111 112222366433 23 477
Q ss_pred eeccccccCCCcchHHHHHHHHHHHHHHHHhCCC--CCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHH
Q 016232 125 AVGNEVLGGADSELWGALLGAVKNVYNSIKKLHL--DDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFF 199 (393)
Q Consensus 125 ~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl--~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL 199 (393)
+++|+.+. . .+..+|++.|+ ++++.|-+-+....... ..|....+..+....-..+++.|
T Consensus 73 i~~~~~~a-------~-------~~~~~l~~~g~~vP~di~vv~~~~~~~~~~-~~p~it~i~~~~~~~g~~a~~~l 134 (160)
T PF13377_consen 73 ICSNDRLA-------L-------GVLRALRELGIRVPQDISVVSFDDSPLLEF-FSPPITTIDQDPREMGREAVELL 134 (160)
T ss_dssp EESSHHHH-------H-------HHHHHHHHTTSCTTTTSEEEEESSSGHHHC-SSSTSEEEEE-HHHHHHHHHHHH
T ss_pred EEcCHHHH-------H-------HHHHHHHHcCCcccccccEEEecCcHHHHH-HcCCCceecCCHHHHHHHHHHHH
Confidence 88776642 1 22345566665 45676666554333332 33455555555433333444443
No 105
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=22.62 E-value=6.8e+02 Score=23.96 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=56.6
Q ss_pred CHHHHHHHHHcCCCCEEEEe-c-CC--hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCC-ceEEE
Q 016232 49 SPDEVAVLLRASKIKNVRIY-D-AD--HSVLKAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPK-TKICG 123 (393)
Q Consensus 49 s~~~v~~llk~~~~~~VRiY-~-~d--~~vL~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~-~~I~~ 123 (393)
.|++.++.+...|.+.|-+- . +. ..+|+.+++.|+.|-.|+-...-. ..+. +.+|.+. +.|--
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T----p~~~--------i~~~l~~vD~VLi 146 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPET----PISL--------LEPYLDQIDLIQI 146 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCC----CHHH--------HHHHHhhcCEEEE
Confidence 57777877777788877443 2 22 267888889998444455432211 1121 1122221 34444
Q ss_pred EeeccccccCCCcchHHHHHHHHHHHHHHHHhCCCC
Q 016232 124 IAVGNEVLGGADSELWGALLGAVKNVYNSIKKLHLD 159 (393)
Q Consensus 124 I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~~gl~ 159 (393)
.+| |+=++ .+.+.+..+..|+++|+.++..|+.
T Consensus 147 MtV--~PGfg-GQ~f~~~~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 147 LTL--DPRTG-TKAPSDLILDRVIQVENRLGNRRVE 179 (228)
T ss_pred EEE--CCCCC-CccccHHHHHHHHHHHHHHHhcCCC
Confidence 444 33222 2456778899999999999888875
No 106
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=22.35 E-value=60 Score=28.43 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=22.6
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHcCCCCEEEEecCC
Q 016232 36 YGINYGRIADNIPSPDEVAVLLRASKIKNVRIYDAD 71 (393)
Q Consensus 36 ~GinYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d 71 (393)
.|||-|. .|.-+.++..+.+...|++.||||=..
T Consensus 9 RGINVGG--~nki~MaeLr~~l~~~Gf~~V~Tyi~S 42 (137)
T PF08002_consen 9 RGINVGG--KNKIKMAELREALEDLGFTNVRTYIQS 42 (137)
T ss_dssp SS-SBTT--BS---HHHHHHHHHHCT-EEEEEETTT
T ss_pred cceecCC--CCcccHHHHHHHHHHcCCCCceEEEee
Confidence 3677664 355568899999999999999999433
No 107
>PRK03941 NTPase; Reviewed
Probab=22.04 E-value=6.3e+02 Score=23.26 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=40.5
Q ss_pred CEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCCCceEEEEeeccccccCCCcchHHHHHHHHHHHHHHHHh
Q 016232 83 LELVVGLPNGLVKEMSANESHAMDWVKENVQNFLPKTKICGIAVGNEVLGGADSELWGALLGAVKNVYNSIKK 155 (393)
Q Consensus 83 ikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~ai~~v~~aL~~ 155 (393)
++|.+|-.|.- ..++ +++.+..++|+..|.++.|-+.+=.. ..+ ...+..|+++++.+++.
T Consensus 1 m~V~VGS~NPv------Ki~A----v~~af~~~~~~~~v~~v~v~SgV~~Q-P~g-eET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNPV------KVEA----VENVFGKIFDDVEVVGVEVDSGVPDQ-PFG-EETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCHH------HHHH----HHHHHHHhCCCcEEEEecCCCCCCCC-CCC-HHHHHHHHHHHHHHHhc
Confidence 46778866532 1222 44455555677667777777776432 234 78899999999999985
No 108
>PRK07198 hypothetical protein; Validated
Probab=21.99 E-value=77 Score=33.00 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=32.0
Q ss_pred HHHHHcCCCCEE-EEecCChHHHHHHhcCCCEEEEecC
Q 016232 54 AVLLRASKIKNV-RIYDADHSVLKAFSGTGLELVVGLP 90 (393)
Q Consensus 54 ~~llk~~~~~~V-RiY~~d~~vL~A~~~~gikV~lGV~ 90 (393)
.|.|+..|+++| |+.+.++.-..++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578889999999 9999999888999999999984443
No 109
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.15 E-value=4.8e+02 Score=24.84 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHcCCCCEEEEecCC---------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCC
Q 016232 48 PSPDEVAVLLRASKIKNVRIYDAD---------HSVLKAFS-GTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLP 117 (393)
Q Consensus 48 ps~~~v~~llk~~~~~~VRiY~~d---------~~vL~A~~-~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~ 117 (393)
.+|.++++.++..|++.+=+.|.+ .+++..++ ..+++|++|=-... .+.++.++.
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s-------~~d~~~~~~-------- 94 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKS-------IEDVDKLLR-------- 94 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCC-------HHHHHHHHH--------
Confidence 378889999988999999888865 14566554 57888888643322 233333332
Q ss_pred CceEEEEeeccccccC
Q 016232 118 KTKICGIAVGNEVLGG 133 (393)
Q Consensus 118 ~~~I~~I~VGNEvl~~ 133 (393)
..+..|+||.+.+.+
T Consensus 95 -~Ga~~vivgt~~~~~ 109 (254)
T TIGR00735 95 -AGADKVSINTAAVKN 109 (254)
T ss_pred -cCCCEEEEChhHhhC
Confidence 135678999999864
No 110
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.79 E-value=8.7e+02 Score=25.04 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCeEEEeceecccccccCCCCcccccccchhhhHHHHHHHhhcCCCceeecCccccc
Q 016232 138 LWGALLGAVKNVYNSIKKLHLDDVVQITTAHSQAVFANSYPPSSCIFKEGVDQFMKPLLDFFSQIGSPFCLNVYPFLAY 216 (393)
Q Consensus 138 ~~~~Lv~ai~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~pPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 216 (393)
...+...+++.+|++. . .+.|++.. +. .|| .+-.+.+.+.++|+.+.+ +-.+++++|--+
T Consensus 268 ~~~~~~~~i~~l~~~~----~--~i~i~~~~----I~-G~P-------gET~e~~~~t~~fl~~~~-~~~~~~~~~sp~ 327 (430)
T TIGR01125 268 SGEQQLDFIERLREKC----P--DAVLRTTF----IV-GFP-------GETEEDFQELLDFVEEGQ-FDRLGAFTYSPE 327 (430)
T ss_pred CHHHHHHHHHHHHHhC----C--CCeEeEEE----EE-ECC-------CCCHHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 3567777787777652 1 24444432 21 233 122467888999998765 445788887543
No 111
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.76 E-value=5.4e+02 Score=23.95 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHcCCCCEEEEecCC---------hHHH-HHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHHhhhccCC
Q 016232 48 PSPDEVAVLLRASKIKNVRIYDAD---------HSVL-KAFSGTGLELVVGLPNGLVKEMSANESHAMDWVKENVQNFLP 117 (393)
Q Consensus 48 ps~~~v~~llk~~~~~~VRiY~~d---------~~vL-~A~~~~gikV~lGV~n~~~~~~a~~~~~A~~Wv~~~v~~~~~ 117 (393)
.+|.++++.+.+.|++.+=+.+.+ .+.+ +.++..++++++|=-.. +.+.++.|+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~-------~~~~~~~~~~-------- 96 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIR-------SAEDAASLLD-------- 96 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcC-------CHHHHHHHHH--------
Confidence 367888888888899888777644 1344 44457889988863322 2233344443
Q ss_pred CceEEEEeeccccccC
Q 016232 118 KTKICGIAVGNEVLGG 133 (393)
Q Consensus 118 ~~~I~~I~VGNEvl~~ 133 (393)
.....|+||++.+.+
T Consensus 97 -~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 97 -LGVDRVILGTAAVEN 111 (241)
T ss_pred -cCCCEEEEChHHhhC
Confidence 234568999999754
No 112
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=20.74 E-value=1.4e+02 Score=30.15 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHcCCCCEEEEecCC------hHHHHHHhcCCCEEEEecCC
Q 016232 47 IPSPDEVAVLLRASKIKNVRIYDAD------HSVLKAFSGTGLELVVGLPN 91 (393)
Q Consensus 47 ~ps~~~v~~llk~~~~~~VRiY~~d------~~vL~A~~~~gikV~lGV~n 91 (393)
.|+++++.+++.... +.||+|... ..+++.++++||+|.+|=-+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 367777777776543 678888533 36788899999999888543
No 113
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=20.73 E-value=52 Score=31.47 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCcceEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCC--ceeEEEEEcccCC
Q 016232 252 QIDAAYAALEDAGFKKMEVIVTETGWASRGDSNEAAATVDNARTYNYNLRKRLAKKKGTPLRPKN--VVKAYVFAIFNEN 329 (393)
Q Consensus 252 ~vDa~~~a~~~~g~~~~~vvItETGWPS~G~~~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~--~~~~y~F~~FDe~ 329 (393)
+.|.+..+++++|.|--=+=-+...| .|+ . +.. .|. ..|-|..||+ .+...+|.-+|++
T Consensus 36 ~adila~aL~~~gvp~EVlGFtT~aw--~gg-----~----~~~------~w~--~~G~p~~pgrln~l~h~vyk~a~~~ 96 (219)
T PF11775_consen 36 CADILARALERCGVPVEVLGFTTRAW--KGG-----R----SRE------AWL--AAGRPRYPGRLNDLRHIVYKDADTP 96 (219)
T ss_pred HHHHHHHHHHhCCCCeEEEeeecCCc--CCc-----c----hHH------HHH--hcCCCCCChHHHHHHHHHHHhcCCh
Confidence 57888888988865432222344445 233 1 111 222 3577888874 5566788888988
Q ss_pred CC
Q 016232 330 QK 331 (393)
Q Consensus 330 wK 331 (393)
|+
T Consensus 97 wr 98 (219)
T PF11775_consen 97 WR 98 (219)
T ss_pred hh
Confidence 86
No 114
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.48 E-value=2.6e+02 Score=24.23 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHcCCCCEEEEecCC-------hHHHHHHhcC---CCEEEEe
Q 016232 48 PSPDEVAVLLRASKIKNVRIYDAD-------HSVLKAFSGT---GLELVVG 88 (393)
Q Consensus 48 ps~~~v~~llk~~~~~~VRiY~~d-------~~vL~A~~~~---gikV~lG 88 (393)
-|++++++..++.+.+.|=+-+.+ +.++++++.. .++|++|
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 366777776666666666665543 3566667654 4577777
No 115
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.33 E-value=1.5e+02 Score=31.56 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=27.8
Q ss_pred HHHHHH----HHHcCCCCEEEEecC-C-----hHHHHHHhcCCCEEEEecC
Q 016232 50 PDEVAV----LLRASKIKNVRIYDA-D-----HSVLKAFSGTGLELVVGLP 90 (393)
Q Consensus 50 ~~~v~~----llk~~~~~~VRiY~~-d-----~~vL~A~~~~gikV~lGV~ 90 (393)
|++|++ ..+.+|++.+|+|++ + ...++++++.|..+.+.+-
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 355544 445689999999984 3 2456677889988654443
No 116
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=20.14 E-value=2.9e+02 Score=29.39 Aligned_cols=46 Identities=24% Similarity=0.184 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCCEEEEe-------c------CCh-------HHHHHHhcCCCEEEEecCCCchhh
Q 016232 51 DEVAVLLRASKIKNVRIY-------D------ADH-------SVLKAFSGTGLELVVGLPNGLVKE 96 (393)
Q Consensus 51 ~~v~~llk~~~~~~VRiY-------~------~d~-------~vL~A~~~~gikV~lGV~n~~~~~ 96 (393)
++.+++|+..|++..|+= - .|+ +++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 566789999888877753 1 132 689999999999999887655554
Done!