BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016234
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 14/276 (5%)
Query: 83 GELYYNHSLGMRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYK 142
G Y H LG Y+ I + VGSC+Q DV+ L K G+ + Q + E +G+D
Sbjct: 1 GSHXYRHELGXNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDIS 60
Query: 143 SINESCQKF-NLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRV-FVTCTTGLNRS 200
SI +K+ ++ I IRD D+FD+R +LP VG L + +K+N V +V T G R+
Sbjct: 61 SIQAYAKKYSDIQHIRCEIRDFDAFDLRXRLPAVVGTLYKAVKRNGGVTYVHSTAGXGRA 120
Query: 201 PASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDRPAVAWATRDLIAMVENGKHDGPPTHAV 260
PA + Y W+ L A+ + C P A+ AT D++ G V
Sbjct: 121 PAVALTYXFWVQGYKLXEAHKLLXSKRSCFPKLDAIRNATIDILT--------GLKRKTV 172
Query: 261 TFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIR-LTQGKYYYKYIVNGQWRH 319
T + V + G G W I T G+ + + R L +G++ YKYI++G+W H
Sbjct: 173 TLTLKDKGFSRVEISGLDIG-WGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTH 231
Query: 320 STISPTERDDK-GNVNNII-IVGDTASVRPSIQQPM 353
+ P +K G+ NN +V D SV + ++ +
Sbjct: 232 NEAEPFIGPNKDGHTNNYAKVVDDPTSVDGTTRERL 267
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 96 SKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSG-------TEA---ENWGIDYKSIN 145
+++T +IYVG+ + D+ L K GIT VLN G T A ++ GI Y I
Sbjct: 29 NEVTPRIYVGNASVAQ-DIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIK 87
Query: 146 ES-CQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASV 204
+ Q+FNL Y R +D D L +KN RV V C G +RSP V
Sbjct: 88 ANDTQEFNLSA--YFERAADFIDQA------------LAQKNGRVLVHCREGYSRSPTLV 133
Query: 205 IAYLHWMTDTSLHAAYNFV 223
IAYL + +A + V
Sbjct: 134 IAYLMMRQKMDVKSALSIV 152
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 96 SKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSG-------TEA---ENWGIDYKSIN 145
+++T +IYVG+ + D+ L K GIT VLN G T A ++ GI Y I
Sbjct: 30 NEVTPRIYVGNASVAQ-DIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIK 88
Query: 146 ES-CQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASV 204
+ Q+FNL Y R +D D L +KN RV V C G +RSP V
Sbjct: 89 ANDTQEFNLSA--YFERAADFIDQA------------LAQKNGRVLVHCREGYSRSPTLV 134
Query: 205 IAYLHWMTDTSLHAAYNFV 223
IAYL + +A + V
Sbjct: 135 IAYLMMRQKMDVKSALSIV 153
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 262 FVWNGQEGEDVLLVGDFTGNW-KDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQWRHS 320
F W G G++V L G F NW K P+ + + + + L +G++ YK+ V+GQW H
Sbjct: 15 FRWTGG-GKEVYLSGSFN-NWSKLPLTRSQ---NNFVAILDLPEGEHQYKFFVDGQWTHD 69
Query: 321 TISPTERDDKGNVNNIIIVGDT 342
P G VNNII V T
Sbjct: 70 PSEPIVTSQLGTVNNIIQVKKT 91
>pdb|3LJ8|A Chain A, Crystal Structure Of Mkp-4
Length = 146
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 97 KITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTE---AENWGIDYKSINESCQKFNL 153
+I +Y+GS + A++E+L+K GI +LN +N YK I
Sbjct: 5 QILPNLYLGSA-RDSANLESLAKLGIRYILNVTPNLPNFFEKNGDFHYKQI--------- 54
Query: 154 LMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTD 213
PI D S ++ + P + + L +N V V C G++RS +AYL
Sbjct: 55 -----PISDHWSQNLSRFFPEAIEFIDEALSQNCGVLVHCLAGVSRSVTVTVAYLMQKLH 109
Query: 214 TSLHAAYNFV 223
SL+ AY+ V
Sbjct: 110 LSLNDAYDLV 119
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 26/139 (18%)
Query: 96 SKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSG-------TEA---ENWGIDYKSIN 145
+++T +IYVG+ + D+ L K GIT VLN G T A ++ GI Y I
Sbjct: 30 NEVTPRIYVGNASVAQ-DIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIK 88
Query: 146 ES-CQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASV 204
+ Q+FNL Y R +D D L +KN RV V G +RSP V
Sbjct: 89 ANDTQEFNLSA--YFERAADFIDQA------------LAQKNGRVLVHSREGYSRSPTLV 134
Query: 205 IAYLHWMTDTSLHAAYNFV 223
IAYL + +A + V
Sbjct: 135 IAYLMMRQKMDVKSALSIV 153
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 262 FVWNGQEGEDVLLVGDFTGNW-KDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQWRHS 320
F W G G++V L G F NW K P + + + + L +G++ YK+ V+GQW H
Sbjct: 15 FRWTGG-GKEVYLSGSFN-NWSKLPXTRSQ---NNFVAILDLPEGEHQYKFFVDGQWTHD 69
Query: 321 TISPTERDDKGNVNNIIIVGDT 342
P G VNNII V T
Sbjct: 70 PSEPIVTSQLGTVNNIIQVKKT 91
>pdb|1M3G|A Chain A, Solution Structure Of The Catalytic Domain Of Mapk
Phosphatase Pac-1: Insights Into Substrate-Induced
Enzymatic Activation
Length = 145
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 97 KITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGI-DYKSINESCQKFNLLM 155
+I +++GSC +D++ L GITAVLN + G+ YKSI
Sbjct: 6 EILPYLFLGSC-SHSSDLQGLQACGITAVLNVSASCPNHFEGLFRYKSI----------- 53
Query: 156 INYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215
P+ D+ ++ +G + + RV V G++RS +AYL
Sbjct: 54 ---PVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICLAYLMQSRRVR 110
Query: 216 LHAAYNFV 223
L A++FV
Sbjct: 111 LDEAFDFV 118
>pdb|2HXP|A Chain A, Crystal Structure Of The Human Phosphatase (Dusp9)
Length = 155
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 97 KITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTE---AENWGIDYKSINESCQKFNL 153
+I +Y+GS + A++E+L+K GI +LN +N YK I
Sbjct: 8 QILPNLYLGSA-RDSANLESLAKLGIRYILNVTPNLPNFFEKNGDFHYKQI--------- 57
Query: 154 LMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTD 213
PI D S ++ + P + + L +N V V G++RS +AYL
Sbjct: 58 -----PISDHWSQNLSRFFPEAIEFIDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQKLH 112
Query: 214 TSLHAAYNFV 223
SL+ AY+ V
Sbjct: 113 LSLNDAYDLV 122
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 269 GEDVLLVGDFTGNW--KDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQWRHSTISPTE 326
G++V + G F NW K P+ +H + + + L +G++ YK+ V+GQW H P
Sbjct: 20 GKEVFISGSFN-NWSTKIPLIKSH---NDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVV 75
Query: 327 RDDKGNVNNIIIV 339
G +NN+I V
Sbjct: 76 TSQLGTINNLIHV 88
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 127 NFQSGTEAENWGIDYKSI-NESCQKF-----NLLMINYPIRDSDSFDMRKKLPFCVGLLL 180
N+++ +A + + +K + N + K+ N+ +I+ P+ D + D+ K L
Sbjct: 60 NYKNAXDAPSSEVKFKYVLNLTXDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLS 119
Query: 181 RLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDRPA 235
+ ++N V V C G+NRS A ++AYL SL Y F+ H R R A
Sbjct: 120 KCDQRNEPVLVHCAAGVNRSGAXILAYLXSKNKESLPXLY-FLYVYHSXRDLRGA 173
>pdb|3EMU|A Chain A, Crystal Structure Of A Leucine Rich Repeat And Phosphatase
Domain Containing Protein From Entamoeba Histolytica
Length = 161
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 116 TLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRK----- 170
TLS I ++ S A N +DY N + L+ I P D D+ +
Sbjct: 7 TLSPTQIIQYIHLGSFLNAHN--VDYIH-NNNISSILLVGIEVPSLFKDQCDILRLDIVS 63
Query: 171 --------KLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNF 222
+P + ++R +++ V + TG+N++PA VIA+L + S A+N
Sbjct: 64 EEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNK 123
Query: 223 VNGLH 227
V GL+
Sbjct: 124 VQGLY 128
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 91 LGMRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQK 150
+G +KI +Y+G+ + D E LSK +T +L+ G+ Y I
Sbjct: 3 MGNGMNKILPGLYIGN-FKDARDAEQLSKNKVTHILSVHDSARPMLEGVKYLCI------ 55
Query: 151 FNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHW 210
P DS S ++ + + + + V C G++RS VIAY+
Sbjct: 56 --------PAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMT 107
Query: 211 MTDTSLHAAYNFVNGLHLCRPDR 233
+TD + + + LH R R
Sbjct: 108 VTD------FGWEDALHTVRAGR 124
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 127 NFQSGTEAENWGIDYKSI-NESCQKF-----NLLMINYPIRDSDSFDMRKKLPFCVGLLL 180
N+++ A + + +K + N + K+ N+ +I+ P+ D + D+ K L
Sbjct: 39 NYKNAXNAPSSEVKFKYVLNLTXDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLS 98
Query: 181 RLLKKNHRVFVTCTTGLNRSPASVIAYL 208
+ ++N V V C G+NRS A ++AYL
Sbjct: 99 KCDQRNEPVLVHCVAGVNRSGAXILAYL 126
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 24/171 (14%)
Query: 67 GSFPLEEYLKALDRSKGELYYNHSLGMRYSKITEQIYVGSCIQKEADVETLSKAGITAVL 126
G+F LE KG Y H +++ ++Y+G D L KAG T VL
Sbjct: 36 GAFELERLF-----WKGSPQYTH-----VNEVWPKLYIGDEATA-LDRYRLQKAGFTHVL 84
Query: 127 NFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSD---SFDMRKKLPFCVGLLLRLL 183
N G + G DY + + I Y ++D +FD+ + R L
Sbjct: 85 NAAHGRWNVDTGPDY---------YRDMDIQYHGVEADDLPTFDLSVFFYPAAAFIDRAL 135
Query: 184 KKNH-RVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDR 233
+H ++ V C G +RS V+AYL D +L A V P+R
Sbjct: 136 SDDHSKILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNRCVLPNR 186
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 127 NFQSGTEAENWGIDYKSI-NESCQKF-----NLLMINYPIRDSDSFDMRKKLPFCVGLLL 180
N+++ +A + + +K + N + K+ N+ +I+ P+ D + D+ K L
Sbjct: 43 NYKNAMDAPSSEVKFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLS 102
Query: 181 RLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDRPA 235
+ ++N V V G+NRS A ++AYL SL Y F+ H R R A
Sbjct: 103 KCDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLY-FLYVYHSMRDLRGA 156
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 267 QEGEDVLLVGDFTGNWKDPI---KATHKGGSRYEVEIRLTQGKYYYKYIVNGQWRHSTIS 323
Q G V + G FT W+ I + GS + V++RL G + +++IV+ + R S
Sbjct: 12 QGGSKVYVTGSFT-KWRKMIGLIPDSDNNGS-FHVKLRLLPGTHRFRFIVDNELRVSDFL 69
Query: 324 PTERDDKGNVNNIIIV 339
PT D GN N I V
Sbjct: 70 PTATDQMGNFVNYIEV 85
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 113 DVETLSKAGITAVLNFQSGTE-AENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKK 171
D++TL K +T +LN G E A YKSI+ I D ++
Sbjct: 21 DLDTLKKNKVTHILNVAYGVENAFLSDFTYKSIS--------------ILDLPETNILSY 66
Query: 172 LPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFV 223
P C + +K+ V V G++R+ A VI +L TS +A++ V
Sbjct: 67 FPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLV 118
>pdb|1MKP|A Chain A, Crystal Structure Of Pyst1 (Mkp3)
Length = 144
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 97 KITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTE--AENWG-IDYKSINESCQKFNL 153
+I +Y+G C + +++ L + GI +LN EN G YK I
Sbjct: 6 EILPFLYLG-CAKDSTNLDVLEEFGIKYILNVTPNLPNLFENAGEFKYKQI--------- 55
Query: 154 LMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTD 213
PI D S ++ + P + + KN V V G++RS +AYL +
Sbjct: 56 -----PISDHWSQNLSQFFPEAISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLN 110
Query: 214 TSLHAAYNFV 223
S++ AY+ V
Sbjct: 111 LSMNDAYDIV 120
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 97 KITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGT-EAENWGIDYKSINESCQKFNLLM 155
+I +Y+GS + E L+ ITA+LN T EA + YK I
Sbjct: 8 EILPFLYLGSAYHA-SKCEFLANLHITALLNVSRRTSEACMTHLHYKWI----------- 55
Query: 156 INYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215
P+ DS + D+ + + + +K +V V G++RSP +AYL
Sbjct: 56 ---PVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFR 112
Query: 216 LHAAYNFVN 224
L A++++
Sbjct: 113 LKEAFDYIK 121
>pdb|3A15|A Chain A, Crystal Structure Of Substrate-Free Form Of Aldoxime
Dehydratase (Oxdre)
pdb|3A15|B Chain B, Crystal Structure Of Substrate-Free Form Of Aldoxime
Dehydratase (Oxdre)
pdb|3A15|C Chain C, Crystal Structure Of Substrate-Free Form Of Aldoxime
Dehydratase (Oxdre)
pdb|3A15|D Chain D, Crystal Structure Of Substrate-Free Form Of Aldoxime
Dehydratase (Oxdre)
pdb|3A16|A Chain A, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Propionaldoxime
pdb|3A16|B Chain B, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Propionaldoxime
pdb|3A16|C Chain C, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Propionaldoxime
pdb|3A16|D Chain D, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Propionaldoxime
pdb|3A17|A Chain A, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A17|B Chain B, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A17|C Chain C, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A17|D Chain D, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A17|E Chain E, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A17|F Chain F, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A17|G Chain G, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A17|H Chain H, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Co-Crystal)
pdb|3A18|A Chain A, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Soaked Crystal)
pdb|3A18|B Chain B, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Soaked Crystal)
pdb|3A18|C Chain C, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Soaked Crystal)
pdb|3A18|D Chain D, Crystal Structure Of Aldoxime Dehydratase (Oxdre) In
Complex With Butyraldoxime (Soaked Crystal)
Length = 373
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 233 RPAVAWATRDLIAMVENGKHDGPPTHAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKG 292
RPA A RD++A + DGP H +T + Q E++++V G WKD + + H+
Sbjct: 76 RPAALQAMRDIVAGFD--LPDGPAHHDLTHHIDNQGYENLIVV----GYWKD-VSSQHRW 128
Query: 293 ------GSRYEVEIRLTQGKYYYKYIV 313
S +E E RL+ G +++ IV
Sbjct: 129 STSTPIASWWESEDRLSDGLGFFREIV 155
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 117 LSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCV 176
L + GIT VLN W + E+ + + + DS +FDM
Sbjct: 23 LRRLGITHVLN----ASHSRW----RGTPEAYEGLGIRYLGVEAHDSPAFDMSIHFQTAA 74
Query: 177 GLLLRLLKK-NHRVFVTCTTGLNRSPASVIAYL 208
+ R L + ++ V C G++RS V+AYL
Sbjct: 75 DFIHRALSQPGGKILVHCAVGVSRSATLVLAYL 107
>pdb|2YVA|A Chain A, Crystal Structure Of Escherichia Coli Diaa
pdb|2YVA|B Chain B, Crystal Structure Of Escherichia Coli Diaa
Length = 196
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 217 HAAYNFVNGLHLCRPDRPAVAWATRDLI--AMVENGKHDGPPTHAVTFVWNGQEGEDVLL 274
H A + +N RP PA+A T +++ A+ + HD +A G G DVLL
Sbjct: 58 HFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHD--EVYAKQVRALGHAG-DVLL 114
Query: 275 VGDFTGNWKDPIKATHKGGSRYEVEIRLT 303
GN +D +KA +R + LT
Sbjct: 115 AISTRGNSRDIVKAVEAAVTRDMTIVALT 143
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 189 VFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNG 225
+ + C G++RS VIAYL T ++ AY FV G
Sbjct: 90 LLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKG 126
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 189 VFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNG 225
+ + C G++RS VIAYL T ++ AY FV G
Sbjct: 86 LLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKG 122
>pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|B Chain B, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|C Chain C, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|D Chain D, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
Length = 604
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 254 GP-PTHAVTFVWNGQEGEDVLLVGDFTGNWKDPIKAT----HKGGSRYEVEIR--LTQGK 306
GP P F+W + +V D G W+DP +A+ H S + EI LT
Sbjct: 317 GPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAAT 376
Query: 307 YYYKYI-----VNGQWRH--STISPTERDDKGNVNNII--IVGDTASVRPSIQQPMKDAN 357
+++ VNG++R TIS + +GN+ I+ +V + +S+ P++D +
Sbjct: 377 RSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVD 436
>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 172 LPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNG 225
LP ++ K ++ + C GL+RS +IAY+ + SL +Y+ +
Sbjct: 103 LPSLTSIIHAATTKREKILIHCQCGLSRSATLIIAYIMKYHNLSLRHSYDLLKS 156
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 29 CQNGHTQLLSRKNVLSQPMNHLVCVFSEEESGDGEWAHGSFPLEEYLKALDRSKGELYYN 88
+ GH LL+ N L + NH + EE ++ G E L+ L S G++
Sbjct: 502 AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLL 561
Query: 89 HSLGMRYSKITEQIYVGSCIQKEADV--ETLSKAGITAVLNFQ 129
L R K ++ + S + + D+ + LS GI NFQ
Sbjct: 562 DQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI----NFQ 600
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 114 VETLSKAGITAVLNFQSGTEAENWGIDYKSINE---SCQKFNLLMINYPIRDSDSFDMRK 170
+E + + I V+ F ++ I Y E KFN + YP D + +
Sbjct: 36 LEGVYRNNIDDVVRFLDSKHKNHYKI-YNLCAERHYDTAKFNCRVAQYPFEDHNPPQLEL 94
Query: 171 KLPFCVGLLLRLLK-KNHRVFVTCTTGLNRSPASVIAYL 208
PFC L L + NH + C G R+ + AYL
Sbjct: 95 IKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYL 133
>pdb|1YZ4|A Chain A, Crystal Structure Of Dusp15
pdb|1YZ4|B Chain B, Crystal Structure Of Dusp15
Length = 160
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 91 LGMRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQK 150
+G +K+ +Y+G+ I + D++ L + IT ++ SI+ES Q
Sbjct: 4 MGNGMTKVLPGLYLGNFIDAK-DLDQLGRNKITHII----------------SIHESPQP 46
Query: 151 F--NLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYL 208
++ + P+ D+ ++K C+ + V G++RS V AY+
Sbjct: 47 LLQDITYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYV 106
Query: 209 HWMTDTSL 216
MT T L
Sbjct: 107 --MTVTGL 112
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
Query: 72 EEYLKALDRSKGELYYN-----HSLGMRYSKITEQIYVGSCIQKEADVETLS---KAGIT 123
EEY+ L + + EL + H L R +K+T I +G+ + D+ + K+ +
Sbjct: 144 EEYI--LKKPRSELMFEEQKDRHGLK-RVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVE 200
Query: 124 AVLNF---------QSGTEAENWGIDYKSINESCQKFNLLMIN 157
A NF SG+E ENW + K I+++C LL+ +
Sbjct: 201 AC-NFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFS 242
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
Query: 72 EEYLKALDRSKGELYYN-----HSLGMRYSKITEQIYVGSCIQKEADVETLS---KAGIT 123
EEY+ L + + EL + H L R +K+T I +G+ + D+ + K+ +
Sbjct: 361 EEYI--LKKPRSELMFEEQKDRHGLK-RVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVE 417
Query: 124 AVLNF---------QSGTEAENWGIDYKSINESCQKFNLLMIN 157
A NF SG+E ENW + K I+++C LL+ +
Sbjct: 418 AC-NFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFS 459
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNG 225
+K+ V C G++RS IAYL + L AYN+V
Sbjct: 101 RKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKA 142
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2
(Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 287 KATHKGGSRYEVEI-RLTQGKYYYKYI-------VNGQWRHSTISPTE---RD---DKGN 332
K T ++ +EI L +G +Y I +N T+ P E RD DKG
Sbjct: 292 KRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQ 351
Query: 333 VNNIIIVGDTASVRPSIQQPMKD 355
+ I++VG + + P IQ+ ++D
Sbjct: 352 IQEIVLVGGSTRI-PKIQKLLQD 373
>pdb|2LJW|A Chain A, Solution Nmr Structure Of Alr2454 Protein From Nostoc Sp.
Strain Pcc 7120, Northeast Structural Genomics
Consortium Target Nsr264
Length = 110
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 291 KGGSRYEVEIRLTQGKYY----YKYIVNGQWRHSTISPTERDDKGNVNNIIIVGDTASVR 346
K G Y+V+ R TQGK + +KY+ + + E D N + +G V+
Sbjct: 13 KWGYSYDVQFRRTQGKIFLQVMWKYLEQASFPMNETEYQEHLDS-VANYLHALGGAVQVK 71
Query: 347 PSIQQPMKDANVVKVIERPLTENER 371
I Q + + K + PL ER
Sbjct: 72 TFITQTKERPRLGKAVSIPLDLGER 96
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 265 NGQEGEDVLLVGDFTGNWKDPIKATHKGGS--RYEVEIRLTQGKYYYKYIVNGQW 317
+G++ + L+ +FTG D I G S RYE+ GK Y+ YI G W
Sbjct: 420 DGRKLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSW 474
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2)
From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 287 KATHKGGSRYEVEI-RLTQGKYYYKYI-------VNGQWRHSTISPTE---RD---DKGN 332
K T ++ +EI L +G +Y I +N T+ P E RD DKG
Sbjct: 274 KRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQ 333
Query: 333 VNNIIIVGDTASVRPSIQQPMKD 355
+ I++VG + + P IQ+ ++D
Sbjct: 334 IQEIVLVGGSTRI-PKIQKLLQD 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,518,731
Number of Sequences: 62578
Number of extensions: 554933
Number of successful extensions: 1237
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 38
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)