Query 016234
Match_columns 393
No_of_seqs 471 out of 1974
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:01:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 6.9E-29 1.5E-33 214.4 13.2 132 93-238 15-147 (198)
2 smart00195 DSPc Dual specifici 100.0 1E-27 2.2E-32 207.2 14.5 130 95-238 1-131 (138)
3 KOG1716 Dual specificity phosp 99.9 6.6E-27 1.4E-31 226.2 13.9 145 91-247 71-216 (285)
4 KOG1717 Dual specificity phosp 99.9 1.2E-26 2.6E-31 213.6 11.5 139 95-247 172-312 (343)
5 cd00127 DSPc Dual specificity 99.9 1.5E-25 3.2E-30 193.2 13.2 131 95-237 2-133 (139)
6 PF00782 DSPc: Dual specificit 99.9 1.7E-25 3.8E-30 191.7 10.8 124 102-237 1-125 (133)
7 cd02859 AMPKbeta_GBD_like AMP- 99.9 2E-24 4.2E-29 169.4 8.8 79 257-338 1-79 (79)
8 PRK12361 hypothetical protein; 99.9 1.5E-22 3.2E-27 212.6 18.3 155 94-265 94-250 (547)
9 KOG1719 Dual specificity phosp 99.9 2.8E-22 6E-27 171.2 12.3 141 97-248 27-167 (183)
10 PTZ00242 protein tyrosine phos 99.9 2E-21 4.2E-26 173.5 15.2 139 94-249 10-156 (166)
11 PTZ00393 protein tyrosine phos 99.8 2.5E-20 5.4E-25 172.6 15.5 133 101-251 93-229 (241)
12 KOG1720 Protein tyrosine phosp 99.8 5.2E-20 1.1E-24 165.1 11.5 145 62-228 30-189 (225)
13 cd02861 E_set_proteins_like E 99.8 1.8E-19 3.9E-24 142.3 9.6 78 258-337 2-81 (82)
14 PF03162 Y_phosphatase2: Tyros 99.7 4.4E-16 9.5E-21 138.7 12.1 125 92-225 4-129 (164)
15 PF05706 CDKN3: Cyclin-depende 99.6 4.3E-16 9.3E-21 136.8 8.4 118 100-220 41-168 (168)
16 COG2453 CDC14 Predicted protei 99.6 5.4E-15 1.2E-19 133.8 10.9 80 149-229 69-149 (180)
17 TIGR01244 conserved hypothetic 99.6 3.1E-14 6.6E-19 123.0 14.8 122 95-226 2-124 (135)
18 KOG1616 Protein involved in Sn 99.6 9.3E-15 2E-19 141.1 8.6 90 252-343 74-165 (289)
19 PF04273 DUF442: Putative phos 99.5 6.6E-14 1.4E-18 116.3 11.1 103 95-206 2-105 (110)
20 KOG2836 Protein tyrosine phosp 99.5 9E-14 2E-18 116.5 11.3 117 114-247 34-152 (173)
21 COG3453 Uncharacterized protei 99.4 1.8E-12 4E-17 106.7 12.9 122 93-224 1-123 (130)
22 cd02858 Esterase_N_term Estera 99.4 2.7E-12 5.9E-17 101.9 9.0 78 258-337 6-84 (85)
23 PLN02727 NAD kinase 99.3 1.5E-11 3.1E-16 131.8 12.0 113 101-219 262-374 (986)
24 KOG1572 Predicted protein tyro 99.0 3.2E-09 7E-14 97.7 12.3 123 91-225 56-186 (249)
25 PF13350 Y_phosphatase3: Tyros 99.0 2.8E-09 6E-14 94.9 9.1 115 98-221 16-158 (164)
26 cd02688 E_set E or "early" set 99.0 2.6E-09 5.7E-14 83.0 7.8 75 258-333 4-79 (83)
27 smart00012 PTPc_DSPc Protein t 98.9 7.3E-09 1.6E-13 83.9 9.3 74 155-228 5-87 (105)
28 smart00404 PTPc_motif Protein 98.9 7.3E-09 1.6E-13 83.9 9.3 74 155-228 5-87 (105)
29 KOG2283 Clathrin coat dissocia 98.7 6.7E-09 1.4E-13 105.3 3.6 140 91-245 11-168 (434)
30 cd02854 Glycogen_branching_enz 98.7 5.9E-08 1.3E-12 79.3 7.5 67 257-324 4-83 (99)
31 cd00047 PTPc Protein tyrosine 98.7 9.5E-08 2.1E-12 89.5 9.6 91 152-246 129-227 (231)
32 PF02922 CBM_48: Carbohydrate- 98.6 1.1E-07 2.4E-12 75.0 5.6 59 258-317 11-74 (85)
33 smart00194 PTPc Protein tyrosi 98.5 1.1E-06 2.4E-11 83.8 11.1 69 173-245 176-253 (258)
34 PF14566 PTPlike_phytase: Inos 98.3 9.4E-07 2E-11 77.6 6.0 66 144-211 84-149 (149)
35 PRK15375 pathogenicity island 98.3 4.6E-06 9.9E-11 85.2 9.9 57 189-248 469-526 (535)
36 COG5350 Predicted protein tyro 98.1 1.2E-05 2.6E-10 69.5 8.5 117 112-238 23-147 (172)
37 COG2365 Protein tyrosine/serin 98.1 7.3E-06 1.6E-10 78.0 7.2 124 98-231 50-181 (249)
38 PF00102 Y_phosphatase: Protei 98.0 1.9E-05 4.2E-10 73.2 8.6 69 172-245 152-230 (235)
39 PHA02740 protein tyrosine phos 98.0 5.1E-05 1.1E-09 74.1 11.2 43 186-228 221-268 (298)
40 PHA02742 protein tyrosine phos 98.0 5.3E-05 1.1E-09 74.2 11.2 43 186-228 229-276 (303)
41 PHA02746 protein tyrosine phos 97.9 5E-05 1.1E-09 75.0 10.2 43 187-229 248-295 (323)
42 PHA02747 protein tyrosine phos 97.8 6.8E-05 1.5E-09 73.8 9.2 43 187-229 230-277 (312)
43 cd02855 Glycogen_branching_enz 97.8 0.00012 2.6E-09 59.8 8.9 55 258-314 21-78 (106)
44 cd02860 Pullulanase_N_term Pul 97.8 6.7E-05 1.5E-09 61.1 6.7 66 258-326 8-84 (100)
45 PHA02738 hypothetical protein; 97.8 0.00011 2.4E-09 72.5 9.4 43 186-228 227-274 (320)
46 cd02856 Glycogen_debranching_e 97.8 6.8E-05 1.5E-09 61.5 6.5 56 259-317 10-68 (103)
47 COG0296 GlgB 1,4-alpha-glucan 97.7 6.8E-05 1.5E-09 79.3 7.1 66 257-324 35-108 (628)
48 cd05814 CBM20_Prei4 Prei4, N-t 97.7 0.00019 4.1E-09 60.6 8.3 55 259-314 2-67 (120)
49 KOG0792 Protein tyrosine phosp 97.7 0.00014 3.1E-09 79.2 9.1 129 101-229 938-1111(1144)
50 cd05808 CBM20_alpha_amylase Al 97.7 0.00014 2.9E-09 58.5 6.9 54 259-313 2-63 (95)
51 KOG2386 mRNA capping enzyme, g 97.6 0.00011 2.3E-09 73.5 5.8 119 102-228 41-166 (393)
52 PF00686 CBM_20: Starch bindin 97.5 0.0002 4.4E-09 57.8 6.1 56 258-313 2-68 (96)
53 KOG0790 Protein tyrosine phosp 97.5 0.00019 4.1E-09 71.8 6.4 55 174-228 433-501 (600)
54 PRK12568 glycogen branching en 97.5 0.00019 4.2E-09 77.5 7.0 65 258-324 138-209 (730)
55 PRK12313 glycogen branching en 97.5 0.00033 7.1E-09 75.4 8.6 66 258-324 38-109 (633)
56 cd02852 Isoamylase_N_term Isoa 97.4 0.0004 8.6E-09 58.4 6.3 61 258-321 7-76 (119)
57 PF04179 Init_tRNA_PT: Initiat 97.4 0.00055 1.2E-08 70.2 8.2 107 96-214 290-404 (451)
58 PLN02447 1,4-alpha-glucan-bran 97.3 0.00062 1.4E-08 73.8 7.5 63 258-322 114-189 (758)
59 COG5599 PTP2 Protein tyrosine 97.2 0.00025 5.4E-09 66.8 3.5 41 172-212 201-244 (302)
60 PRK05402 glycogen branching en 97.2 0.001 2.3E-08 72.6 8.8 64 258-322 131-201 (726)
61 PRK14706 glycogen branching en 97.2 0.00093 2E-08 71.8 7.9 76 259-337 39-121 (639)
62 cd05816 CBM20_DPE2_repeat2 Dis 97.2 0.0034 7.3E-08 51.1 9.4 54 260-313 2-64 (99)
63 cd02853 MTHase_N_term Maltooli 97.1 0.0022 4.8E-08 50.6 7.6 63 258-325 8-71 (85)
64 PRK14705 glycogen branching en 97.1 0.00093 2E-08 75.9 6.8 63 258-322 638-708 (1224)
65 cd05817 CBM20_DSP Dual-specifi 97.0 0.0027 5.9E-08 51.7 6.9 48 265-313 9-62 (100)
66 TIGR02402 trehalose_TreZ malto 96.9 0.0025 5.5E-08 67.4 8.2 73 260-339 1-75 (542)
67 cd05811 CBM20_glucoamylase Glu 96.9 0.0055 1.2E-07 50.3 8.3 57 257-313 6-73 (106)
68 cd05818 CBM20_water_dikinase P 96.9 0.005 1.1E-07 49.4 7.6 54 259-313 3-61 (92)
69 cd05809 CBM20_beta_amylase Bet 96.9 0.004 8.6E-08 50.7 6.9 55 258-313 3-68 (99)
70 cd05820 CBM20_novamyl Novamyl 96.8 0.009 2E-07 49.0 8.4 56 258-313 3-70 (103)
71 cd05813 CBM20_genethonin_1 Gen 96.7 0.0049 1.1E-07 49.6 6.2 55 259-313 2-62 (95)
72 cd05467 CBM20 The family 20 ca 96.7 0.0054 1.2E-07 49.1 6.4 48 266-313 10-65 (96)
73 TIGR01515 branching_enzym alph 96.6 0.0043 9.3E-08 66.6 7.1 65 258-324 28-100 (613)
74 KOG0791 Protein tyrosine phosp 96.5 0.0091 2E-07 58.9 7.8 87 158-245 258-347 (374)
75 cd05810 CBM20_alpha_MTH Glucan 96.5 0.0068 1.5E-07 49.2 5.9 55 259-313 2-64 (97)
76 KOG0789 Protein tyrosine phosp 96.4 0.015 3.3E-07 58.9 9.1 57 172-228 281-347 (415)
77 KOG0793 Protein tyrosine phosp 96.0 0.023 5.1E-07 60.0 8.3 136 90-228 787-975 (1004)
78 PF14671 DSPn: Dual specificit 96.0 0.023 5E-07 49.3 6.8 66 160-226 38-110 (141)
79 cd05815 CBM20_DPE2_repeat1 Dis 95.9 0.045 9.8E-07 44.5 8.1 50 264-313 8-65 (101)
80 cd05807 CBM20_CGTase CGTase, C 95.9 0.036 7.7E-07 45.2 7.1 56 258-313 3-70 (101)
81 PRK05402 glycogen branching en 95.8 0.015 3.2E-07 63.7 6.1 60 259-321 29-93 (726)
82 TIGR02104 pulA_typeI pullulana 95.2 0.044 9.6E-07 58.8 7.0 63 259-324 20-92 (605)
83 PF03423 CBM_25: Carbohydrate 95.1 0.079 1.7E-06 42.1 6.6 61 259-320 3-77 (87)
84 PRK03705 glycogen debranching 95.0 0.046 1E-06 59.1 6.4 57 258-317 19-78 (658)
85 KOG4228 Protein tyrosine phosp 94.8 0.023 5.1E-07 63.0 3.6 61 172-232 712-778 (1087)
86 PLN02960 alpha-amylase 94.7 0.037 7.9E-07 60.9 4.8 59 255-314 125-198 (897)
87 PRK10439 enterobactin/ferric e 94.3 0.16 3.5E-06 52.0 8.2 89 254-342 35-164 (411)
88 cd05806 CBM20_laforin Laforin 94.0 0.38 8.3E-06 40.1 8.4 48 267-314 13-75 (112)
89 PF11806 DUF3327: Domain of un 93.4 0.65 1.4E-05 39.3 9.0 83 258-341 2-114 (122)
90 TIGR02100 glgX_debranch glycog 93.4 0.16 3.4E-06 55.4 6.4 57 258-317 14-75 (688)
91 PLN02950 4-alpha-glucanotransf 93.1 0.46 9.9E-06 53.3 9.7 60 254-313 5-74 (909)
92 PLN02950 4-alpha-glucanotransf 92.8 0.55 1.2E-05 52.7 9.7 70 255-324 150-233 (909)
93 TIGR02102 pullulan_Gpos pullul 92.7 0.24 5.2E-06 56.5 6.8 65 259-324 328-406 (1111)
94 KOG4228 Protein tyrosine phosp 92.4 0.21 4.5E-06 55.8 5.7 59 186-245 1018-1078(1087)
95 PLN02316 synthase/transferase 92.2 0.99 2.1E-05 51.2 10.8 76 256-340 152-238 (1036)
96 PLN02316 synthase/transferase 91.1 0.6 1.3E-05 52.9 7.6 82 255-341 326-420 (1036)
97 TIGR02103 pullul_strch alpha-1 90.9 0.5 1.1E-05 52.8 6.7 65 258-324 135-213 (898)
98 KOG4471 Phosphatidylinositol 3 90.6 0.33 7.1E-06 50.8 4.6 38 172-209 360-397 (717)
99 cd01518 RHOD_YceA Member of th 90.4 1.2 2.6E-05 35.6 7.0 29 184-215 59-87 (101)
100 PLN02160 thiosulfate sulfurtra 90.2 1 2.2E-05 38.7 6.7 87 112-215 20-107 (136)
101 PF04343 DUF488: Protein of un 90.1 1.7 3.7E-05 36.5 7.9 47 114-160 6-52 (122)
102 KOG0470 1,4-alpha-glucan branc 88.9 1.5 3.3E-05 47.2 8.0 41 260-301 115-157 (757)
103 PRK14510 putative bifunctional 88.6 0.79 1.7E-05 53.2 6.2 57 258-317 23-84 (1221)
104 COG0607 PspE Rhodanese-related 87.4 1.8 3.9E-05 34.7 6.1 71 115-211 13-84 (110)
105 PRK01415 hypothetical protein; 86.9 1.3 2.8E-05 42.1 5.6 28 184-214 169-196 (247)
106 PLN03244 alpha-amylase; Provis 83.3 1.1 2.5E-05 49.0 3.7 57 256-314 129-201 (872)
107 PLN02877 alpha-amylase/limit d 81.0 3.2 6.9E-05 46.8 6.2 52 259-314 223-280 (970)
108 PF06602 Myotub-related: Myotu 80.3 2.9 6.2E-05 42.0 5.2 23 184-206 229-251 (353)
109 cd01520 RHOD_YbbB Member of th 73.8 13 0.00027 31.2 6.7 30 183-214 83-112 (128)
110 cd02857 CD_pullulan_degrading_ 73.7 13 0.00028 30.2 6.6 55 258-313 16-79 (116)
111 cd01448 TST_Repeat_1 Thiosulfa 73.2 21 0.00046 29.2 7.9 30 184-215 77-106 (122)
112 PRK00142 putative rhodanese-re 73.0 5.3 0.00011 39.4 4.7 27 185-214 170-196 (314)
113 PRK05320 rhodanese superfamily 72.9 6.9 0.00015 37.4 5.3 27 185-214 174-200 (257)
114 KOG1089 Myotubularin-related p 72.5 4.8 0.00011 42.5 4.4 31 174-204 331-362 (573)
115 COG1054 Predicted sulfurtransf 64.2 30 0.00065 33.8 7.6 86 98-208 105-192 (308)
116 cd01533 4RHOD_Repeat_2 Member 63.1 17 0.00036 29.3 5.1 27 185-214 65-91 (109)
117 cd01522 RHOD_1 Member of the R 62.7 39 0.00085 27.7 7.3 29 183-214 61-89 (117)
118 PF00581 Rhodanese: Rhodanese- 62.1 29 0.00062 27.4 6.3 82 119-215 10-98 (113)
119 COG3794 PetE Plastocyanin [Ene 61.9 20 0.00042 30.7 5.3 53 255-310 59-111 (128)
120 PF02903 Alpha-amylase_N: Alph 60.2 21 0.00045 29.7 5.2 55 259-314 22-88 (120)
121 cd01527 RHOD_YgaP Member of th 58.9 25 0.00055 27.5 5.3 17 183-200 51-67 (99)
122 PF01357 Pollen_allerg_1: Poll 58.2 27 0.00058 27.2 5.2 60 258-320 14-77 (82)
123 TIGR03503 conserved hypothetic 58.0 19 0.0004 36.4 5.2 41 273-316 152-195 (374)
124 cd01523 RHOD_Lact_B Member of 56.8 12 0.00027 29.5 3.2 29 184-215 59-87 (100)
125 PF02571 CbiJ: Precorrin-6x re 56.7 27 0.00059 33.2 6.0 84 101-191 46-135 (249)
126 cd01528 RHOD_2 Member of the R 54.9 30 0.00066 27.3 5.2 28 185-215 57-84 (101)
127 TIGR03865 PQQ_CXXCW PQQ-depend 53.0 25 0.00055 31.0 4.8 30 184-215 114-143 (162)
128 PRK08057 cobalt-precorrin-6x r 52.0 43 0.00094 31.8 6.5 85 101-196 45-135 (248)
129 cd01534 4RHOD_Repeat_3 Member 51.8 21 0.00045 27.9 3.7 28 185-215 55-82 (95)
130 PF03370 CBM_21: Putative phos 50.1 68 0.0015 26.4 6.7 52 269-321 33-106 (113)
131 cd01532 4RHOD_Repeat_1 Member 49.8 28 0.00061 27.1 4.2 29 185-214 49-77 (92)
132 smart00400 ZnF_CHCC zinc finge 49.8 20 0.00043 25.5 3.0 32 190-223 23-54 (55)
133 PF03861 ANTAR: ANTAR domain; 49.4 17 0.00037 26.0 2.6 26 201-226 15-40 (56)
134 COG3958 Transketolase, C-termi 48.1 1.2E+02 0.0025 29.8 8.7 94 115-225 212-310 (312)
135 PRK05600 thiamine biosynthesis 47.7 25 0.00053 35.5 4.3 25 187-214 333-357 (370)
136 TIGR00715 precor6x_red precorr 46.7 45 0.00097 31.9 5.7 84 102-191 47-134 (256)
137 smart00450 RHOD Rhodanese Homo 46.3 50 0.0011 25.0 5.1 29 184-215 54-82 (100)
138 TIGR00190 thiC thiamine biosyn 43.3 66 0.0014 32.8 6.4 99 118-225 87-214 (423)
139 PF07483 W_rich_C: Tryptophan- 43.1 71 0.0015 26.5 5.6 51 260-316 23-73 (109)
140 PRK05728 DNA polymerase III su 41.2 45 0.00097 28.8 4.4 26 171-196 14-39 (142)
141 PF04364 DNA_pol3_chi: DNA pol 40.9 45 0.00098 28.6 4.4 24 172-195 15-38 (137)
142 PRK06646 DNA polymerase III su 40.0 52 0.0011 29.0 4.6 26 171-196 14-39 (154)
143 cd01529 4RHOD_Repeats Member o 39.8 35 0.00076 26.6 3.3 28 184-214 54-81 (96)
144 PRK11493 sseA 3-mercaptopyruva 39.7 28 0.00062 33.4 3.3 29 184-215 229-257 (281)
145 PF10302 DUF2407: DUF2407 ubiq 39.3 15 0.00033 29.7 1.1 11 186-196 85-95 (97)
146 PF11896 DUF3416: Domain of un 39.3 35 0.00076 31.1 3.6 40 281-321 56-100 (187)
147 TIGR02482 PFKA_ATP 6-phosphofr 39.1 3.6E+02 0.0077 26.4 10.8 84 114-206 84-177 (301)
148 PF13292 DXP_synthase_N: 1-deo 38.2 37 0.0008 32.7 3.6 41 146-194 229-269 (270)
149 cd01531 Acr2p Eukaryotic arsen 37.7 1.2E+02 0.0027 24.3 6.4 19 185-203 61-79 (113)
150 PRK10886 DnaA initiator-associ 37.2 58 0.0013 29.8 4.7 36 170-208 25-60 (196)
151 PRK14071 6-phosphofructokinase 36.5 2.9E+02 0.0062 27.8 9.9 78 113-197 99-186 (360)
152 PF03668 ATP_bind_2: P-loop AT 35.8 38 0.00082 33.0 3.3 17 188-204 244-260 (284)
153 COG2927 HolC DNA polymerase II 35.7 39 0.00084 29.5 3.1 23 172-194 15-37 (144)
154 PRK13352 thiamine biosynthesis 34.2 57 0.0012 33.4 4.4 99 118-225 87-217 (431)
155 PRK05416 glmZ(sRNA)-inactivati 33.9 45 0.00097 32.5 3.6 36 170-205 222-264 (288)
156 PRK11784 tRNA 2-selenouridine 33.8 1.6E+02 0.0034 29.5 7.5 28 185-214 87-114 (345)
157 TIGR00753 undec_PP_bacA undeca 33.3 40 0.00087 32.2 3.1 26 195-222 160-185 (255)
158 PRK12554 undecaprenyl pyrophos 33.1 40 0.00087 32.6 3.1 26 195-222 166-191 (276)
159 PF02673 BacA: Bacitracin resi 33.0 42 0.0009 32.2 3.1 27 194-222 159-185 (259)
160 COG2099 CobK Precorrin-6x redu 32.9 91 0.002 29.8 5.3 87 102-192 47-134 (257)
161 cd01447 Polysulfide_ST Polysul 32.9 43 0.00094 26.1 2.8 29 183-214 58-86 (103)
162 PF13473 Cupredoxin_1: Cupredo 32.9 75 0.0016 25.4 4.3 46 258-310 43-91 (104)
163 COG0279 GmhA Phosphoheptose is 32.8 1.3E+02 0.0028 27.0 5.9 33 168-203 23-55 (176)
164 PF12683 DUF3798: Protein of u 32.5 83 0.0018 30.3 5.0 79 115-196 124-209 (275)
165 cd01525 RHOD_Kc Member of the 32.3 64 0.0014 25.4 3.8 26 186-214 65-90 (105)
166 PF11343 DUF3145: Protein of u 31.8 68 0.0015 28.2 3.9 66 258-332 25-102 (158)
167 PRK13938 phosphoheptose isomer 31.8 86 0.0019 28.6 4.9 41 167-210 26-66 (196)
168 PTZ00286 6-phospho-1-fructokin 31.7 3.6E+02 0.0078 28.1 10.0 101 100-207 152-269 (459)
169 COG1660 Predicted P-loop-conta 31.2 68 0.0015 31.0 4.1 17 188-204 245-261 (286)
170 cd01519 RHOD_HSP67B2 Member of 31.2 69 0.0015 25.2 3.8 28 185-215 65-92 (106)
171 cd01526 RHOD_ThiF Member of th 30.7 53 0.0012 27.0 3.1 28 184-214 70-97 (122)
172 PRK00281 undecaprenyl pyrophos 30.7 47 0.001 32.0 3.1 26 195-222 164-189 (268)
173 PRK06036 translation initiatio 30.6 84 0.0018 31.4 4.9 17 184-200 146-162 (339)
174 TIGR02981 phageshock_pspE phag 30.2 1.1E+02 0.0025 24.5 4.9 27 185-214 57-83 (101)
175 PF14347 DUF4399: Domain of un 29.8 1E+02 0.0022 24.4 4.4 33 292-325 49-81 (87)
176 cd01444 GlpE_ST GlpE sulfurtra 29.7 1E+02 0.0022 23.7 4.4 29 183-214 53-81 (96)
177 PRK05772 translation initiatio 29.3 96 0.0021 31.3 5.1 13 184-196 165-177 (363)
178 cd04445 DEP_PLEK1 DEP (Disheve 28.9 61 0.0013 26.3 2.9 36 185-225 23-59 (99)
179 TIGR03167 tRNA_sel_U_synt tRNA 28.7 92 0.002 30.7 4.8 27 186-214 74-100 (311)
180 PF13344 Hydrolase_6: Haloacid 28.5 1.2E+02 0.0025 24.4 4.7 44 171-216 15-58 (101)
181 cd01530 Cdc25 Cdc25 phosphatas 28.3 79 0.0017 26.2 3.8 25 184-210 66-91 (121)
182 PF05763 DUF835: Protein of un 28.2 1.6E+02 0.0035 25.2 5.7 62 172-246 60-133 (136)
183 cd01310 TatD_DNAse TatD like p 27.7 4.6E+02 0.01 23.7 10.0 19 177-195 112-130 (251)
184 PF07287 DUF1446: Protein of u 27.5 2.9E+02 0.0062 27.9 8.1 96 115-218 65-189 (362)
185 COG1099 Predicted metal-depend 27.5 32 0.00069 32.3 1.2 83 100-190 5-99 (254)
186 cd01317 DHOase_IIa Dihydroorot 27.2 2.8E+02 0.006 27.6 8.1 18 177-194 124-141 (374)
187 PLN02884 6-phosphofructokinase 26.9 5.7E+02 0.012 26.3 10.3 88 114-207 136-236 (411)
188 TIGR00512 salvage_mtnA S-methy 26.9 1.2E+02 0.0026 30.2 5.3 13 184-196 141-157 (331)
189 PRK10287 thiosulfate:cyanide s 26.7 1.4E+02 0.0029 24.3 4.8 27 185-214 59-85 (104)
190 COG0381 WecB UDP-N-acetylgluco 26.7 2.1E+02 0.0047 29.0 7.0 89 114-212 23-115 (383)
191 TIGR02657 amicyanin amicyanin. 26.6 1.1E+02 0.0023 23.5 4.0 49 259-310 20-69 (83)
192 COG0182 Predicted translation 26.5 65 0.0014 31.9 3.2 31 183-213 147-181 (346)
193 PLN02960 alpha-amylase 26.4 1.1E+02 0.0025 34.4 5.5 53 287-340 318-376 (897)
194 KOG1530 Rhodanese-related sulf 26.2 98 0.0021 26.6 3.8 71 112-200 28-102 (136)
195 PF09423 PhoD: PhoD-like phosp 26.1 1.5E+02 0.0033 30.5 6.1 51 257-315 30-85 (453)
196 PF01964 ThiC: ThiC family; I 25.8 2.9E+02 0.0064 28.3 7.8 99 118-225 86-213 (420)
197 TIGR00853 pts-lac PTS system, 25.6 61 0.0013 25.9 2.5 13 186-198 3-15 (95)
198 cd01443 Cdc25_Acr2p Cdc25 enzy 25.6 1.9E+02 0.0041 23.2 5.5 17 186-202 66-82 (113)
199 PF04234 CopC: CopC domain; I 25.2 2.1E+02 0.0046 22.6 5.6 58 259-316 21-86 (97)
200 PF07495 Y_Y_Y: Y_Y_Y domain; 24.9 68 0.0015 23.0 2.5 25 297-321 30-58 (66)
201 PF01807 zf-CHC2: CHC2 zinc fi 24.5 76 0.0017 25.4 2.9 35 190-226 54-88 (97)
202 cd01521 RHOD_PspE2 Member of t 24.2 95 0.0021 24.9 3.5 30 183-214 61-91 (110)
203 PF10634 Iron_transport: Fe2+ 24.1 1.4E+02 0.0031 26.2 4.5 48 259-314 69-117 (151)
204 cd05567 PTS_IIB_mannitol PTS_I 24.0 79 0.0017 24.5 2.8 19 187-206 1-19 (87)
205 PLN02449 ferrochelatase 23.9 1.3E+02 0.0028 31.7 5.0 90 97-193 329-423 (485)
206 TIGR02375 pseudoazurin pseudoa 23.9 1.8E+02 0.0039 24.2 5.1 65 258-341 23-88 (116)
207 KOG0235 Phosphoglycerate mutas 23.8 1.3E+02 0.0027 28.1 4.5 53 166-224 132-188 (214)
208 COG2897 SseA Rhodanese-related 23.5 69 0.0015 31.2 2.8 15 183-197 231-245 (285)
209 TIGR03102 halo_cynanin halocya 23.2 2.4E+02 0.0052 23.5 5.7 50 257-310 49-99 (115)
210 PLN00115 pollen allergen group 23.1 1.9E+02 0.0041 24.3 5.0 47 269-317 47-95 (118)
211 PF09994 DUF2235: Uncharacteri 23.0 4.2E+02 0.0092 25.3 8.2 55 168-225 73-136 (277)
212 PRK00414 gmhA phosphoheptose i 22.9 1.6E+02 0.0035 26.5 5.0 31 170-203 28-58 (192)
213 COG0794 GutQ Predicted sugar p 22.8 1.9E+02 0.0041 26.7 5.3 35 172-212 28-62 (202)
214 TIGR00236 wecB UDP-N-acetylglu 22.6 4.3E+02 0.0092 25.8 8.5 90 115-215 21-112 (365)
215 TIGR03642 cas_csx13 CRISPR-ass 22.4 2.2E+02 0.0049 24.1 5.4 59 153-213 54-116 (124)
216 PF00127 Copper-bind: Copper b 22.3 2.2E+02 0.0047 22.5 5.2 19 258-276 25-43 (99)
217 cd03174 DRE_TIM_metallolyase D 22.2 3.3E+02 0.0072 25.2 7.3 87 114-206 121-210 (265)
218 cd05806 CBM20_laforin Laforin 22.1 1.6E+02 0.0035 24.4 4.4 40 21-65 67-106 (112)
219 TIGR02764 spore_ybaN_pdaB poly 21.9 3.4E+02 0.0075 24.0 7.0 53 142-196 110-162 (191)
220 PRK10785 maltodextrin glucosid 21.7 2E+02 0.0044 31.0 6.2 58 258-316 19-87 (598)
221 KOG1004 Exosomal 3'-5' exoribo 21.6 1.7E+02 0.0036 27.3 4.7 38 186-225 185-222 (230)
222 PLN02444 HMP-P synthase 21.5 1.9E+02 0.0042 30.8 5.7 99 118-225 247-372 (642)
223 PRK09284 thiamine biosynthesis 21.5 2.3E+02 0.005 30.2 6.2 99 118-225 242-367 (607)
224 TIGR01460 HAD-SF-IIA Haloacid 21.3 3E+02 0.0065 25.5 6.7 55 171-226 15-78 (236)
225 COG1968 BacA Undecaprenyl pyro 21.3 94 0.002 30.0 3.2 26 195-222 165-190 (270)
226 PF04985 Phage_tube: Phage tai 21.3 2.9E+02 0.0062 24.2 6.2 48 271-324 99-148 (167)
227 PF02302 PTS_IIB: PTS system, 21.2 1.3E+02 0.0027 23.1 3.5 13 188-200 1-13 (90)
228 cd07694 Ig2_CD4 Second immunog 21.1 2.2E+02 0.0047 22.7 4.7 51 259-313 30-83 (88)
229 PF05986 ADAM_spacer1: ADAM-TS 20.9 2.2E+02 0.0047 23.5 5.0 15 310-324 49-63 (114)
230 COG1154 Dxs Deoxyxylulose-5-ph 20.5 1.3E+02 0.0027 32.5 4.2 43 147-197 238-280 (627)
231 COG3707 AmiR Response regulato 20.5 91 0.002 28.6 2.8 24 203-226 149-172 (194)
232 COG2374 Predicted extracellula 20.4 71 0.0015 35.1 2.3 48 269-317 674-722 (798)
233 PLN02225 1-deoxy-D-xylulose-5- 20.3 1.3E+02 0.0028 33.1 4.4 46 146-199 320-367 (701)
234 PF08353 DUF1727: Domain of un 20.1 1.9E+02 0.0042 23.9 4.5 66 112-194 44-109 (113)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=6.9e-29 Score=214.43 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=122.6
Q ss_pred CCceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccH
Q 016234 93 MRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKL 172 (393)
Q Consensus 93 ~~~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l 172 (393)
-.+++|++.||+++.. .+.+...|+++||++|||++.+.+...+ .+++|+.+|+.|.+...+.++|
T Consensus 15 ~~~SqIt~sLfl~~Gv-aA~~k~~l~~~~It~IiNat~E~pn~~l-------------~~~qy~kv~~~D~p~~~l~~hf 80 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGV-AANDKLLLKKRKITCIINATTEVPNTSL-------------PDIQYMKVPLEDTPQARLYDHF 80 (198)
T ss_pred cchhhcCcceeEeccc-cccCHHHHHhcCceEEEEcccCCCCccC-------------CCceeEEEEcccCCcchhhhhh
Confidence 3489999999999665 7899999999999999999999865443 5899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCC-CCCccchhH
Q 016234 173 PFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLC-RPDRPAVAW 238 (393)
Q Consensus 173 ~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~-~Pn~~fl~~ 238 (393)
+.+.+.|+....+||++||||.||+|||+++++||||++.+|++.||+.|+|++||+ +||.||+++
T Consensus 81 D~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~Q 147 (198)
T KOG1718|consen 81 DPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQ 147 (198)
T ss_pred hHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 799999964
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.95 E-value=1e-27 Score=207.16 Aligned_cols=130 Identities=28% Similarity=0.411 Sum_probs=118.1
Q ss_pred ceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHH
Q 016234 95 YSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPF 174 (393)
Q Consensus 95 ~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~ 174 (393)
.++|.|+||+|+++ ++.+.+.|+++||++||||+.+.+.. ...+++|+++|+.|....++...+..
T Consensus 1 ~~~I~~~l~~G~~~-~~~~~~~l~~~gi~~Vi~l~~~~~~~-------------~~~~~~~~~ipi~D~~~~~~~~~~~~ 66 (138)
T smart00195 1 PSEILPHLYLGSYS-SALNLALLKKLGITHVINVTNEVPNL-------------NKKGFTYLGVPILDNTETKISPYFPE 66 (138)
T ss_pred CcEEeCCeEECChh-HcCCHHHHHHcCCCEEEEccCCCCCC-------------CCCCCEEEEEECCCCCCCChHHHHHH
Confidence 36899999999998 88899999999999999999876521 13789999999999777778788999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCC-CCCccchhH
Q 016234 175 CVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLC-RPDRPAVAW 238 (393)
Q Consensus 175 av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~-~Pn~~fl~~ 238 (393)
+++||+.++.+|++|||||.+|+|||+++++||||+..|+++++|+++|+++||. .||.+|+++
T Consensus 67 ~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~q 131 (138)
T smart00195 67 AVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQ 131 (138)
T ss_pred HHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999995 699998864
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=6.6e-27 Score=226.19 Aligned_cols=145 Identities=26% Similarity=0.369 Sum_probs=130.1
Q ss_pred CCCCceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccc
Q 016234 91 LGMRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRK 170 (393)
Q Consensus 91 ~~~~~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~ 170 (393)
.++++..|.|+||+|++. .+.+.+.|+++||++|||+....+... +....+++|+++|+.|.+..+|..
T Consensus 71 ~~~~~~~i~p~l~lg~~~-~~~~~~~l~~~~it~vln~~~~~~~~~----------~~~~~~~~y~~i~~~D~~~~~i~~ 139 (285)
T KOG1716|consen 71 TGNPIVEILPNLYLGSQG-VASDPDLLKKLGITHVLNVSSSCPNPR----------FLKEQGIKYLRIPVEDNPSTDILQ 139 (285)
T ss_pred ccCCceeecCCceecCcc-cccchhhHHHcCCCEEEEecccCCccc----------cccccCceEEeccccCCccccHHH
Confidence 457799999999999998 999999999999999999999876432 112248999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCCC-CCccchhHHHHHHHHHH
Q 016234 171 KLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCR-PDRPAVAWATRDLIAMV 247 (393)
Q Consensus 171 ~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~~-Pn~~fl~~~~~~ll~~~ 247 (393)
+|+++++||++++.+|++|||||.+|+|||+++++||||++++|++++|+++|+++|++. ||.+|+.+ ..++.+++
T Consensus 140 ~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~Q-L~~~e~~l 216 (285)
T KOG1716|consen 140 HFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQ-LLEFEKRL 216 (285)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHH-HHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999986 99999953 45555544
No 4
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=1.2e-26 Score=213.56 Aligned_cols=139 Identities=24% Similarity=0.380 Sum_probs=125.4
Q ss_pred ceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhC-CeEEEEEeccCCCCccccccHH
Q 016234 95 YSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKF-NLLMINYPIRDSDSFDMRKKLP 173 (393)
Q Consensus 95 ~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~-gi~y~~ipi~D~~~~~l~~~l~ 173 (393)
..+|+|+||+|+.. ++.+.+.|+++||++|||++...+. .++.. .+.|.++|+.|..+.++.++|+
T Consensus 172 PV~ilp~LYLg~a~-ds~NldvLkk~gI~yviNVTpnlpn------------~fe~~g~f~YkqipisDh~Sqnls~ffp 238 (343)
T KOG1717|consen 172 PVEILPNLYLGCAK-DSTNLDVLKKYGIKYVINVTPNLPN------------NFENNGEFIYKQIPISDHASQNLSQFFP 238 (343)
T ss_pred chhhccchhccccc-ccccHHHHHhcCceEEEecCCCCcc------------hhhcCCceeEEeeeccchhhhhhhhhhH
Confidence 56899999999987 9999999999999999999987642 23333 4899999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccC-CCCCccchhHHHHHHHHHH
Q 016234 174 FCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHL-CRPDRPAVAWATRDLIAMV 247 (393)
Q Consensus 174 ~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~-~~Pn~~fl~~~~~~ll~~~ 247 (393)
+|+.||++++.++..|||||-+|+|||.|+++||||.+...++++|+++|+.++. +.||.+|+- +..|+.+++
T Consensus 239 EAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMg-QLldfertl 312 (343)
T KOG1717|consen 239 EAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMG-QLLDFERTL 312 (343)
T ss_pred HHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhH-HHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999986 679999995 446777766
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.93 E-value=1.5e-25 Score=193.20 Aligned_cols=131 Identities=33% Similarity=0.407 Sum_probs=118.5
Q ss_pred ceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHH
Q 016234 95 YSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPF 174 (393)
Q Consensus 95 ~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~ 174 (393)
+++|.|+||+|+++ ++.+.+.|+++||++||||+.+.+. ......|++|+++|+.|.+..++...++.
T Consensus 2 ~~~i~~~l~~g~~~-~~~d~~~L~~~gi~~VI~l~~~~~~-----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 69 (139)
T cd00127 2 LSEITPGLYLGSYP-AASDKELLKKLGITHVLNVAKEVPN-----------ENLFLSDFNYLYVPILDLPSQDISKYFDE 69 (139)
T ss_pred cCEEcCCeEECChh-HhcCHHHHHHcCCCEEEEcccCCCC-----------cccCCCCceEEEEEceeCCCCChHHHHHH
Confidence 67899999999999 8889999999999999999998763 12234789999999999887777778999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCC-CCCccchh
Q 016234 175 CVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLC-RPDRPAVA 237 (393)
Q Consensus 175 av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~-~Pn~~fl~ 237 (393)
+++||+..++++++|||||.+|+|||++++++|||...++++++|+++||++||. .||.+|+.
T Consensus 70 ~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~ 133 (139)
T cd00127 70 AVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMR 133 (139)
T ss_pred HHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999985 58888775
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.93 E-value=1.7e-25 Score=191.71 Aligned_cols=124 Identities=25% Similarity=0.361 Sum_probs=112.5
Q ss_pred eEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHH
Q 016234 102 IYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLR 181 (393)
Q Consensus 102 LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~ 181 (393)
||+|+.+ .+. .+.|+++||++|||++.+.+.. ......++.|+++|+.|....++...|+.+++||++
T Consensus 1 lylG~~~-~a~-~~~l~~~~I~~Vin~~~~~~~~----------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~ 68 (133)
T PF00782_consen 1 LYLGSYP-AAS-IAFLKNLGITHVINLQEECPNP----------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIEN 68 (133)
T ss_dssp EEEEEHH-HHC-HHHHHHTTEEEEEECSSSSSTS----------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHH
T ss_pred CEEeCHH-HHh-HHHHHHCCCCEEEEccCCCcCc----------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhh
Confidence 7999998 777 9999999999999999987532 234557899999999998888888999999999999
Q ss_pred HHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCC-CCCccchh
Q 016234 182 LLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLC-RPDRPAVA 237 (393)
Q Consensus 182 ~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~-~Pn~~fl~ 237 (393)
+..+|++|||||.+|+|||+++++||||...+|++++|+++|+++||. .|+.+|++
T Consensus 69 ~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~ 125 (133)
T PF00782_consen 69 AISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIR 125 (133)
T ss_dssp HHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHH
T ss_pred hhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999985 58888775
No 7
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.91 E-value=2e-24 Score=169.39 Aligned_cols=79 Identities=49% Similarity=0.953 Sum_probs=74.1
Q ss_pred CccceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCcceE
Q 016234 257 THAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQWRHSTISPTERDDKGNVNNI 336 (393)
Q Consensus 257 ~~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~YkF~VDG~w~~d~~~p~~~d~~G~~nnv 336 (393)
+++|+|+|.+ ++++|+|+|||+ ||++.++|.+..++ |+++++||+|.|+|||+|||+|.+||+.|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~-~a~~V~v~G~F~-~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPG-GGKEVYVTGSFD-NWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcC-CCcEEEEEEEcC-CCCccccceECCCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 3689999996 899999999999 99988999987776 99999999999999999999999999999999999999999
Q ss_pred EE
Q 016234 337 II 338 (393)
Q Consensus 337 i~ 338 (393)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 8
>PRK12361 hypothetical protein; Provisional
Probab=99.89 E-value=1.5e-22 Score=212.62 Aligned_cols=155 Identities=22% Similarity=0.329 Sum_probs=127.2
Q ss_pred CceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHH
Q 016234 94 RYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLP 173 (393)
Q Consensus 94 ~~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~ 173 (393)
.+++|.|+||+|+.+ .+.|.+.|+++||++||||+.+.+...+ .....+++|+++|+.|...+++ ++|+
T Consensus 94 ~~~~I~~~l~lG~~~-~a~d~~~L~~~gI~~Vldlt~E~~~~~~---------~~~~~~i~yl~iPi~D~~~p~~-~~l~ 162 (547)
T PRK12361 94 AIQKIDENLYLGCRL-FPADLEKLKSNKITAILDVTAEFDGLDW---------SLTEEDIDYLNIPILDHSVPTL-AQLN 162 (547)
T ss_pred cceEEcCcEEECCCC-CcccHHHHHHcCCCEEEEcccccccccc---------cccccCceEEEeecCCCCCCcH-HHHH
Confidence 478999999999998 9999999999999999999976542111 1123679999999999876655 6799
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHH-cCCCHHHHHHHHhhccCC-CCCccchhHHHHHHHHHHHcCC
Q 016234 174 FCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWM-TDTSLHAAYNFVNGLHLC-RPDRPAVAWATRDLIAMVENGK 251 (393)
Q Consensus 174 ~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~-~g~sl~eA~~~vr~~R~~-~Pn~~fl~~~~~~ll~~~~~~r 251 (393)
++++||++++++|++|||||.+|+|||+++++||||.+ .++++++|+++||++||+ .||. .|+..|+.+.+..
T Consensus 163 ~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~-----~q~~~l~~~~~~~ 237 (547)
T PRK12361 163 QAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNK-----RQLRALEKMLEQG 237 (547)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCH-----HHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999977 589999999999999995 5886 3455566665544
Q ss_pred CCCCCCccceeeee
Q 016234 252 HDGPPTHAVTFVWN 265 (393)
Q Consensus 252 ~dg~~~~~v~f~w~ 265 (393)
.... +..+.|.++
T Consensus 238 ~~~~-~~~~~iI~N 250 (547)
T PRK12361 238 KLNI-HKRAWLIAN 250 (547)
T ss_pred Cccc-CCceEEEEC
Confidence 4444 346677777
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.88 E-value=2.8e-22 Score=171.22 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=124.5
Q ss_pred eeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHH
Q 016234 97 KITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCV 176 (393)
Q Consensus 97 ~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av 176 (393)
.|.+.+.+|..|-...+.+.++++|+..|+++.++.|.... ...++..||+++.+|..|....+-.+.+.+++
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~-------s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aV 99 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAP-------SNLWKNYGIEFLVIPTRDYTGAPSLENIQKAV 99 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhh-------hHHHHhccceeEEeccccccCCCCHHHHHHHH
Confidence 68888999988877788999999999999999998875532 34678899999999999966555556799999
Q ss_pred HHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCCccchhHHHHHHHHHHH
Q 016234 177 GLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDRPAVAWATRDLIAMVE 248 (393)
Q Consensus 177 ~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~~Pn~~fl~~~~~~ll~~~~ 248 (393)
+||++....|+.|||||+||.+||+|+|+||||.+.+|++++|+++||++|| +-.++.+||+.++.+.
T Consensus 100 eFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp----~VlL~~~Qw~~l~ef~ 167 (183)
T KOG1719|consen 100 EFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRP----RVLLRPAQWDVLKEFY 167 (183)
T ss_pred HHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCc----ceeecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998883 5678899999998773
No 10
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.87 E-value=2e-21 Score=173.50 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=113.8
Q ss_pred CceeeeCCeEEcCCcCCc----ccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCcccc
Q 016234 94 RYSKITEQIYVGSCIQKE----ADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMR 169 (393)
Q Consensus 94 ~~~~I~p~LylGs~~~~a----~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~ 169 (393)
.++.|..++++-..| .. .+++.|+++||++||+++.+.+ ..+.++..|+.|+++|+.|...+..
T Consensus 10 ~~~~~~~r~~~~~~P-~~~~~~~~l~~L~~~gI~~Iv~l~~~~~----------~~~~~~~~gi~~~~~p~~D~~~P~~- 77 (166)
T PTZ00242 10 QIEYVLFKFLILDAP-SPSNLPLYIKELQRYNVTHLVRVCGPTY----------DAELLEKNGIEVHDWPFDDGAPPPK- 77 (166)
T ss_pred ceeeeceEEEEecCC-CcccHHHHHHHHHhCCCeEEEecCCCCC----------CHHHHHHCCCEEEecCCCCCCCCCH-
Confidence 477899999999988 54 4558899999999999976532 2345667899999999999776554
Q ss_pred ccHHHHHHHHHHHHhC----CCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCCccchhHHHHHHHH
Q 016234 170 KKLPFCVGLLLRLLKK----NHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDRPAVAWATRDLIA 245 (393)
Q Consensus 170 ~~l~~av~fI~~~l~~----g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~~Pn~~fl~~~~~~ll~ 245 (393)
+.+.+.++++++.+.. |++|+|||.+|+||||+++++|||...++++++|+++|+++|+.. +...|+++|.
T Consensus 78 ~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-----i~~~Q~~~l~ 152 (166)
T PTZ00242 78 AVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-----INQTQLQFLK 152 (166)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-----chHHHHHHHH
Confidence 3577788888887754 999999999999999999999999999999999999999999643 3456778888
Q ss_pred HHHc
Q 016234 246 MVEN 249 (393)
Q Consensus 246 ~~~~ 249 (393)
.+.+
T Consensus 153 ~~~~ 156 (166)
T PTZ00242 153 KYKP 156 (166)
T ss_pred HHHH
Confidence 7754
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.85 E-value=2.5e-20 Score=172.64 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=111.1
Q ss_pred CeEEcCCcCCc----ccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHH
Q 016234 101 QIYVGSCIQKE----ADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCV 176 (393)
Q Consensus 101 ~LylGs~~~~a----~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av 176 (393)
++++-..| .. ..++.|++.||++||++++..+ ..+.++..||.++++|++|...++. +.+.+.+
T Consensus 93 rfLi~~~P-~~~~~~~yl~eLk~~gV~~lVrlcE~~Y----------d~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l 160 (241)
T PTZ00393 93 KILILDAP-TNDLLPLYIKEMKNYNVTDLVRTCERTY----------NDGEITSAGINVHELIFPDGDAPTV-DIVSNWL 160 (241)
T ss_pred eEEEeCCC-CHHHHHHHHHHHHHcCCCEEEECCCCCC----------CHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHH
Confidence 57788877 54 4558899999999999987543 2345677899999999999887765 4688899
Q ss_pred HHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHcCC
Q 016234 177 GLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDRPAVAWATRDLIAMVENGK 251 (393)
Q Consensus 177 ~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~~Pn~~fl~~~~~~ll~~~~~~r 251 (393)
++|++.+..|++|+|||.+|+||||+++++|||. .||++++|+++||++||... ...|+.+|+.+++..
T Consensus 161 ~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-----n~~Q~~fL~~y~~~~ 229 (241)
T PTZ00393 161 TIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-----NKRQLQFLKAYKKKK 229 (241)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhc
Confidence 9999999899999999999999999999999997 69999999999999996543 346888899886544
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.82 E-value=5.2e-20 Score=165.13 Aligned_cols=145 Identities=13% Similarity=0.174 Sum_probs=117.6
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCceeecccCCCCceeeeCCeEEcC-CcCCc--------------ccHHHHHhCCCceEE
Q 016234 62 GEWAHGSFPLEEYLKALDRSKGELYYNHSLGMRYSKITEQIYVGS-CIQKE--------------ADVETLSKAGITAVL 126 (393)
Q Consensus 62 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~I~p~LylGs-~~~~a--------------~d~~~L~~~GIt~Vv 126 (393)
|..+..++++++|+..+..++++ +++|+|+.+++= .|+.. .-+..++..+++.|+
T Consensus 30 g~l~~~~~~~~~ye~ye~ve~gd----------fnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~v 99 (225)
T KOG1720|consen 30 GWLDFSSFNVDEYEHYEAVENGD----------FNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIV 99 (225)
T ss_pred cccchheecchhheeeeccCCCC----------cceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEE
Confidence 45566788999999998888887 555999854432 12111 123567788999999
Q ss_pred ecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHH
Q 016234 127 NFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIA 206 (393)
Q Consensus 127 nl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~a 206 (393)
.|....+ ..+.+...||.++++|+.|+.++++. .+.+.++.++.+++ ||+|.|||++|+|||+++++|
T Consensus 100 rln~~~y----------d~~~f~~~Gi~h~~l~f~Dg~tP~~~-~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc 167 (225)
T KOG1720|consen 100 RLNKRLY----------DAKRFTDAGIDHHDLFFADGSTPTDA-IVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIAC 167 (225)
T ss_pred EcCCCCC----------ChHHhcccCceeeeeecCCCCCCCHH-HHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHH
Confidence 9988764 34566778999999999999888874 57888888888888 999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhhccC
Q 016234 207 YLHWMTDTSLHAAYNFVNGLHL 228 (393)
Q Consensus 207 YLm~~~g~sl~eA~~~vr~~R~ 228 (393)
|||+.+|||+.||+++||..||
T Consensus 168 ~lmy~~g~ta~eaI~~lR~~Rp 189 (225)
T KOG1720|consen 168 YLMYEYGMTAGEAIAWLRICRP 189 (225)
T ss_pred HHHHHhCCCHHHHHHHHHhcCC
Confidence 9999999999999999998885
No 13
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.80 E-value=1.8e-19 Score=142.25 Aligned_cols=78 Identities=31% Similarity=0.670 Sum_probs=72.2
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEEEEEcCeee-cCCCCC-eeeCCCCCcce
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQWR-HSTISP-TERDDKGNVNN 335 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~YkF~VDG~w~-~d~~~p-~~~d~~G~~nn 335 (393)
.+|+|+|.++.+++|+|+|+|| +|+. .+|.+.++|.|++++.|++|.|+|||+|||.|. .||.++ +..|++|+.||
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn-~W~~-~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~ 79 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFN-NWNA-IPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNA 79 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECC-CCCc-ccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccce
Confidence 4789999999999999999999 9984 899887779999999999999999999999998 999888 78999999999
Q ss_pred EE
Q 016234 336 II 337 (393)
Q Consensus 336 vi 337 (393)
+|
T Consensus 80 v~ 81 (82)
T cd02861 80 VF 81 (82)
T ss_pred Ec
Confidence 87
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.67 E-value=4.4e-16 Score=138.65 Aligned_cols=125 Identities=15% Similarity=0.236 Sum_probs=80.2
Q ss_pred CCCceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCcccccc
Q 016234 92 GMRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKK 171 (393)
Q Consensus 92 ~~~~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~ 171 (393)
..|+..|.++||.|++| ++.++..|+++|+++||+|+.+... .....++++.||+++++++.....+.....
T Consensus 4 P~nF~~V~~~vYRS~~P-~~~n~~fL~~L~LKTII~L~~e~~~-------~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~ 75 (164)
T PF03162_consen 4 PLNFGMVEPGVYRSAQP-TPANFPFLERLGLKTIINLRPEPPS-------QDFLEFAEENGIKLIHIPMSSSKDPWVPIS 75 (164)
T ss_dssp -TT-EEEETTEEEESS---HHHHHHHHHHT-SEEEE--SS----------HHHHHHHHHTT-EEEE-------GGG----
T ss_pred CccccCCCCCccCCCCC-ChhhHHHHHHCCCceEEEecCCCCC-------HHHHHHHhhcCceEEEeccccccCccccCC
Confidence 36789999999999999 9999999999999999999987642 234568899999999999976554221111
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhh
Q 016234 172 LPFCVGLLLRLLK-KNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNG 225 (393)
Q Consensus 172 l~~av~fI~~~l~-~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~ 225 (393)
-..+.+.++..++ ...+|||||..|..|||+++++|- +.+||++..|++..+.
T Consensus 76 ~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 76 EEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 2233333333333 367999999999999988877777 8899999999999884
No 15
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.64 E-value=4.3e-16 Score=136.76 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=82.5
Q ss_pred CCeEEcCCcCC---------cccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccc
Q 016234 100 EQIYVGSCIQK---------EADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRK 170 (393)
Q Consensus 100 p~LylGs~~~~---------a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~ 170 (393)
..|.+..+|.. ..|++.|+..|++.||.|.+..|...++++ .+.+.+++.||.++|+||.|...+++.
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp--~L~~~~~~~Gi~~~h~PI~D~~aPd~~- 117 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVP--DLGEAAQARGIAWHHLPIPDGSAPDFA- 117 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-T--THHHHHHHTT-EEEE----TTS---HH-
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCc--cHHHHHHHcCCEEEecCccCCCCCCHH-
Confidence 35777777732 467789999999999999999999888764 378999999999999999999988864
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHc-CCCHHHHH
Q 016234 171 KLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMT-DTSLHAAY 220 (393)
Q Consensus 171 ~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~-g~sl~eA~ 220 (393)
.+.+.++.|...+++|++|+|||.+|+|||+++++++|+... .+++++|+
T Consensus 118 ~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 118 AAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 355788889999999999999999999999888877777654 48999986
No 16
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.60 E-value=5.4e-15 Score=133.84 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=71.6
Q ss_pred hhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHc-CCCHHHHHHHHhhcc
Q 016234 149 QKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMT-DTSLHAAYNFVNGLH 227 (393)
Q Consensus 149 ~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~-g~sl~eA~~~vr~~R 227 (393)
...++.++++|+.|...+++ ..+.+++++|+.++++|++|+|||.+|+|||||+++||||.++ .+..++|+..++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 34789999999999998888 6799999999999999999999999999999999999999995 567777777777777
Q ss_pred CC
Q 016234 228 LC 229 (393)
Q Consensus 228 ~~ 229 (393)
+.
T Consensus 148 ~~ 149 (180)
T COG2453 148 PG 149 (180)
T ss_pred Cc
Confidence 65
No 17
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.59 E-value=3.1e-14 Score=122.98 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=91.2
Q ss_pred ceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHH
Q 016234 95 YSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPF 174 (393)
Q Consensus 95 ~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~ 174 (393)
+.+|.+.+|+++++ ++.|++.|+++||++|||++...|..... +.....+.+...|+.|+++|+..... -++
T Consensus 2 ~~~i~~~~~~s~ql-t~~d~~~L~~~GiktVIdlR~~~E~~~~p-~~~~~~~~a~~~gl~y~~iPv~~~~~------~~~ 73 (135)
T TIGR01244 2 IRKLTEHLYVSPQL-TKADAAQAAQLGFKTVINNRPDREEESQP-DFAQIKAAAEAAGVTYHHQPVTAGDI------TPD 73 (135)
T ss_pred ceEcCCCeeEcCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCCC-CHHHHHHHHHHCCCeEEEeecCCCCC------CHH
Confidence 46799999999999 99999999999999999999887654321 22223455677899999999875331 112
Q ss_pred HHHHHHHHHh-CCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 016234 175 CVGLLLRLLK-KNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGL 226 (393)
Q Consensus 175 av~fI~~~l~-~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~ 226 (393)
.+..+.+.++ ..++||+||++|. ||+.+.+.++.. .|++.+++++..+..
T Consensus 74 ~v~~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~ 124 (135)
T TIGR01244 74 DVETFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAA 124 (135)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHc
Confidence 2233333333 3689999999999 997777666655 799999999999854
No 18
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.55 E-value=9.3e-15 Score=141.10 Aligned_cols=90 Identities=36% Similarity=0.682 Sum_probs=81.3
Q ss_pred CCCCCCccceeeeeCCCCceEEEEeecCCCCcccccccccCCC--cEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCC
Q 016234 252 HDGPPTHAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGS--RYEVEIRLTQGKYYYKYIVNGQWRHSTISPTERDD 329 (393)
Q Consensus 252 ~dg~~~~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g--~~~~~~~L~~G~y~YkF~VDG~w~~d~~~p~~~d~ 329 (393)
......++++|+|. ++++.|+|.|+|+ ||...+++.+..++ .|+..++|++|.|+|||+|||+|.+|++.|++.|.
T Consensus 74 ~~~~~~~pvvi~W~-~gg~~v~v~gS~~-nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~ 151 (289)
T KOG1616|consen 74 KDREQGRPTVIRWS-QGGKEVYVDGSFG-NWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDS 151 (289)
T ss_pred cccccCCceEEEec-CCCceEEEecccc-cccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccc
Confidence 34466789999999 5799999999999 99988999876543 39999999999999999999999999999999999
Q ss_pred CCCcceEEEeCCCC
Q 016234 330 KGNVNNIIIVGDTA 343 (393)
Q Consensus 330 ~G~~nnvi~v~~~~ 343 (393)
.|+.||++.|.+..
T Consensus 152 ~Gn~~N~i~v~~~~ 165 (289)
T KOG1616|consen 152 LGNLNNILEVQDPD 165 (289)
T ss_pred cCCcccceEecCcc
Confidence 99999999998865
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.53 E-value=6.6e-14 Score=116.33 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=66.4
Q ss_pred ceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHH
Q 016234 95 YSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPF 174 (393)
Q Consensus 95 ~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~ 174 (393)
+.+|.+.+++++++ ++.+++.|++.||++|||++.+.|.+.. .....+.+.++..|+.|+++|+.... + -.+
T Consensus 2 i~~i~~~~~vs~Q~-~~~d~~~la~~GfktVInlRpd~E~~~q-p~~~~~~~~a~~~Gl~y~~iPv~~~~---~---~~~ 73 (110)
T PF04273_consen 2 IRQISDDLSVSGQP-SPEDLAQLAAQGFKTVINLRPDGEEPGQ-PSSAEEAAAAEALGLQYVHIPVDGGA---I---TEE 73 (110)
T ss_dssp -EEEETTEEEECS---HHHHHHHHHCT--EEEE-S-TTSTTT--T-HHCHHHHHHHCT-EEEE----TTT--------HH
T ss_pred CEecCCCeEECCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCC-CCHHHHHHHHHHcCCeEEEeecCCCC---C---CHH
Confidence 67899999999999 9999999999999999999998775432 23445778899999999999997533 1 123
Q ss_pred HHHHHHHHHh-CCCeEEEEcCCCCChhHHHHHH
Q 016234 175 CVGLLLRLLK-KNHRVFVTCTTGLNRSPASVIA 206 (393)
Q Consensus 175 av~fI~~~l~-~g~~VLVHC~aGisRS~tlv~a 206 (393)
.++.+.+++. ..++||+||+.|. ||.++.++
T Consensus 74 ~v~~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 74 DVEAFADALESLPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHHHHHHHTTTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEECCCCh-hHHHHHHH
Confidence 3333444454 4789999999996 99666543
No 20
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.53 E-value=9e-14 Score=116.50 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=91.8
Q ss_pred HHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHh--CCCeEEE
Q 016234 114 VETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLK--KNHRVFV 191 (393)
Q Consensus 114 ~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~--~g~~VLV 191 (393)
++.|+++|+++||.+++..+. ....+..||..+..|++|..++.- +..++-.+.+..... .|..|.|
T Consensus 34 ieELkKygvttvVRVCe~TYd----------t~~lek~GI~Vldw~f~dg~ppp~-qvv~~w~~l~~~~f~e~p~~cvav 102 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPTYD----------TTPLEKEGITVLDWPFDDGAPPPN-QVVDDWLSLVKTKFREEPGCCVAV 102 (173)
T ss_pred HHHHHhcCCeEEEEecccccC----------CchhhhcCceEeecccccCCCCch-HHHHHHHHHHHHHHhhCCCCeEEE
Confidence 478999999999999987652 233466899999999999654442 233333333333322 3788999
Q ss_pred EcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCCccchhHHHHHHHHHH
Q 016234 192 TCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRPDRPAVAWATRDLIAMV 247 (393)
Q Consensus 192 HC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~~Pn~~fl~~~~~~ll~~~ 247 (393)
||.+|+||+|.+|+..|+. .||.+++|++++|++| +|++...|+.+|..+
T Consensus 103 hcvaglgrapvlvalalie-~gmkyedave~ir~kr-----rga~n~kql~~leky 152 (173)
T KOG2836|consen 103 HCVAGLGRAPVLVALALIE-AGMKYEDAVEMIRQKR-----RGAINSKQLLYLEKY 152 (173)
T ss_pred EeecccCcchHHHHHHHHH-ccccHHHHHHHHHHHh-----hccccHHHHHHHHHh
Confidence 9999999999999888875 4999999999999999 899999999999877
No 21
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.45 E-value=1.8e-12 Score=106.70 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=98.2
Q ss_pred CCceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccH
Q 016234 93 MRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKL 172 (393)
Q Consensus 93 ~~~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l 172 (393)
|.+.+|.++|.+++++ +..|+..++.+|++.|||.+++.|.+. ..+...+.+.++..|+.|.++|+.-... -
T Consensus 1 M~i~~I~d~lsVsgQi-~~~D~~~iaa~GFksiI~nRPDgEe~~-QP~~~~i~~aa~~aGl~y~~iPV~~~~i------T 72 (130)
T COG3453 1 MDIRRINDRLSVSGQI-SPADIASIAALGFKSIICNRPDGEEPG-QPGFAAIAAAAEAAGLTYTHIPVTGGGI------T 72 (130)
T ss_pred CCceecccceeecCCC-CHHHHHHHHHhccceecccCCCCCCCC-CCChHHHHHHHHhcCCceEEeecCCCCC------C
Confidence 5678899999999999 999999999999999999999998764 3566778899999999999999975432 2
Q ss_pred HHHHHHHHHHHhC-CCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHh
Q 016234 173 PFCVGLLLRLLKK-NHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVN 224 (393)
Q Consensus 173 ~~av~fI~~~l~~-g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr 224 (393)
...++.+.+++.+ +++||.||+.| .|| +.+.+.--...||+.++..++=+
T Consensus 73 ~~dV~~f~~Al~eaegPVlayCrsG-tRs-~~ly~~~~~~~gm~~de~~a~g~ 123 (130)
T COG3453 73 EADVEAFQRALDEAEGPVLAYCRSG-TRS-LNLYGLGELDGGMSRDEIEALGQ 123 (130)
T ss_pred HHHHHHHHHHHHHhCCCEEeeecCC-chH-HHHHHHHHHhcCCCHHHHHHHHH
Confidence 3455666666655 78999999999 588 44444444666899999887755
No 22
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.37 E-value=2.7e-12 Score=101.93 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=66.3
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEE-cCCceEEEEEEEcCeeecCCCCCeeeCCCCCcceE
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIR-LTQGKYYYKYIVNGQWRHSTISPTERDDKGNVNNI 336 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG~w~~d~~~p~~~d~~G~~nnv 336 (393)
..|+|+..++.|++|.|.|+|+ +|.. .+|.+.++|.|++++. |++|.|+|+|+|||.|+.||.++...-..+..-|+
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~-~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWG-GAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecC-CCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 4789998889999999999999 8876 8898888999999995 88999999999999999999999655444555444
Q ss_pred E
Q 016234 337 I 337 (393)
Q Consensus 337 i 337 (393)
+
T Consensus 84 ~ 84 (85)
T cd02858 84 V 84 (85)
T ss_pred e
Confidence 3
No 23
>PLN02727 NAD kinase
Probab=99.29 E-value=1.5e-11 Score=131.77 Aligned_cols=113 Identities=11% Similarity=0.257 Sum_probs=88.4
Q ss_pred CeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHH
Q 016234 101 QIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLL 180 (393)
Q Consensus 101 ~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~ 180 (393)
.+|++++| ++.+++.|.++||++|||++.+.+.. +....++.+.++..|++|+++|+.+...+.. +.+.++.++++
T Consensus 262 ~~~rsgQp-spe~la~LA~~GfKTIINLRpd~E~~--q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~ 337 (986)
T PLN02727 262 AFWRGGQV-TEEGLKWLLEKGFKTIVDLRAEIVKD--NFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVS 337 (986)
T ss_pred eEEEeCCC-CHHHHHHHHHCCCeEEEECCCCCcCC--CchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHH
Confidence 47999999 99999999999999999999988732 2234457888999999999999976554332 23555555553
Q ss_pred HHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHH
Q 016234 181 RLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAA 219 (393)
Q Consensus 181 ~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA 219 (393)
+ ...++||+||++|..|+++++++||.+..+.....+
T Consensus 338 ~--slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~ 374 (986)
T PLN02727 338 D--SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLL 374 (986)
T ss_pred h--hcCCCEEEECCCCCchHHHHHHHHHHHHcccchhhh
Confidence 3 246899999999999999999999999887653333
No 24
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.02 E-value=3.2e-09 Score=97.69 Aligned_cols=123 Identities=11% Similarity=0.205 Sum_probs=95.1
Q ss_pred CCCCceeeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCC------
Q 016234 91 LGMRYSKITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSD------ 164 (393)
Q Consensus 91 ~~~~~~~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~------ 164 (393)
..+||+.|.+.||.|++| .+.++.+|+.++.++||.|+.+... +....++++.+|.++++.+....
T Consensus 56 pPlnFs~V~~~lyRSg~P-~~~NfsFL~~L~LksIisL~pE~yp-------~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P 127 (249)
T KOG1572|consen 56 PPLNFSMVDNGLYRSGFP-RPENFSFLKTLHLKSIISLCPEPYP-------EENLNFLESNGIKLYQIGIEGEKDNKKEP 127 (249)
T ss_pred CCccccccccceeecCCC-CccchHHHHHhhhheEEEecCCCCC-------hHHHHHHHhcCceEEEEecccccccccCC
Confidence 467899999999999999 9999999999999999999999742 22456999999999999997533
Q ss_pred Ccccc-ccHHHHHHHHHHHH-hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhh
Q 016234 165 SFDMR-KKLPFCVGLLLRLL-KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNG 225 (393)
Q Consensus 165 ~~~l~-~~l~~av~fI~~~l-~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~ 225 (393)
..++. ..+..++++ .+ ..+.++||||..|..|++++ +++|-+.++|++.-.++..+.
T Consensus 128 ~~~~~~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~l-VgclRklq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 128 FVNIPDHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCL-VGCLRKLQNWSLSSILDEYLR 186 (249)
T ss_pred CCCChHHHHHHHHHH---HhcccCCceEEecCCCCcchhhh-HHHHHHHhccchhHHHHHHHH
Confidence 12221 223444444 33 24789999999999999555 555669999999888877663
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.96 E-value=2.8e-09 Score=94.92 Aligned_cols=115 Identities=22% Similarity=0.273 Sum_probs=61.3
Q ss_pred eeCC-eEEcCCcC--CcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCcc---cccc
Q 016234 98 ITEQ-IYVGSCIQ--KEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFD---MRKK 171 (393)
Q Consensus 98 I~p~-LylGs~~~--~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~---l~~~ 171 (393)
|-++ ||.++.+. ++.|.+.|+++||++||+|+...|..... . ....|+.++++|+.+..... +...
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p-------~-~~~~g~~~~~~p~~~~~~~~~~~~~~~ 87 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAP-------D-PLIDGVQYVHIPIFGDDASSPDKLAEL 87 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS------------TT-EEEE--SS-S-TTH-------
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCC-------C-CCcCCceeeeecccccccccccccccc
Confidence 5555 99998773 36788899999999999999988744321 1 11258999999998655441 1100
Q ss_pred ----------------------HHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHH
Q 016234 172 ----------------------LPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYN 221 (393)
Q Consensus 172 ----------------------l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~ 221 (393)
-+...++++......++||+||++|+.|| .+++|.|+...|.+.++.++
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRT-G~~~alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 88 LQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRT-GVVAALLLSLLGVPDEDIIA 158 (164)
T ss_dssp ---HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHH-HHHHHHHHHHTT--HHHHHH
T ss_pred cccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccH-HHHHHHHHHHcCCCHHHHHH
Confidence 11222223333334579999999999999 55556666777999887754
No 26
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.95 E-value=2.6e-09 Score=83.02 Aligned_cols=75 Identities=29% Similarity=0.458 Sum_probs=63.3
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEEcCC-ceEEEEEEEcCeeecCCCCCeeeCCCCCc
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQ-GKYYYKYIVNGQWRHSTISPTERDDKGNV 333 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~-G~y~YkF~VDG~w~~d~~~p~~~d~~G~~ 333 (393)
+.++|++.++.+++|.|.++|+ +|....+|.+..+|.|++.+.+.. +.|.|+|+|||.|..++.++...+.....
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~-~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~ 79 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFN-GDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSGD 79 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEEC-CCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCccc
Confidence 5789999989999999999999 766678998888899999999887 99999999999999998775444443333
No 27
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.91 E-value=7.3e-09 Score=83.89 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=53.2
Q ss_pred EEEEeccCCCCccccccHHHHHHHHHHHHh---CCCeEEEEcCCCCChhHHHHHHHHHHHc------CCCHHHHHHHHhh
Q 016234 155 MINYPIRDSDSFDMRKKLPFCVGLLLRLLK---KNHRVFVTCTTGLNRSPASVIAYLHWMT------DTSLHAAYNFVNG 225 (393)
Q Consensus 155 y~~ipi~D~~~~~l~~~l~~av~fI~~~l~---~g~~VLVHC~aGisRS~tlv~aYLm~~~------g~sl~eA~~~vr~ 225 (393)
|.....+|...++....+.+.++.++.... .+++|+|||.+|+|||++++++|++... -.++.+++..+|+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 334445555444433445556666655544 2679999999999999999999999764 2678899999998
Q ss_pred ccC
Q 016234 226 LHL 228 (393)
Q Consensus 226 ~R~ 228 (393)
.|+
T Consensus 85 ~r~ 87 (105)
T smart00012 85 QRP 87 (105)
T ss_pred hhh
Confidence 874
No 28
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.91 E-value=7.3e-09 Score=83.89 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=53.2
Q ss_pred EEEEeccCCCCccccccHHHHHHHHHHHHh---CCCeEEEEcCCCCChhHHHHHHHHHHHc------CCCHHHHHHHHhh
Q 016234 155 MINYPIRDSDSFDMRKKLPFCVGLLLRLLK---KNHRVFVTCTTGLNRSPASVIAYLHWMT------DTSLHAAYNFVNG 225 (393)
Q Consensus 155 y~~ipi~D~~~~~l~~~l~~av~fI~~~l~---~g~~VLVHC~aGisRS~tlv~aYLm~~~------g~sl~eA~~~vr~ 225 (393)
|.....+|...++....+.+.++.++.... .+++|+|||.+|+|||++++++|++... -.++.+++..+|+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 334445555444433445556666655544 2679999999999999999999999764 2678899999998
Q ss_pred ccC
Q 016234 226 LHL 228 (393)
Q Consensus 226 ~R~ 228 (393)
.|+
T Consensus 85 ~r~ 87 (105)
T smart00404 85 QRP 87 (105)
T ss_pred hhh
Confidence 874
No 29
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.72 E-value=6.7e-09 Score=105.32 Aligned_cols=140 Identities=17% Similarity=0.229 Sum_probs=97.7
Q ss_pred CCCCceeeeCCeEEcCCcCCcccHHHHHhCCCc--------------eEEecCCCCCccccCCChhhhhhHhhhCCeEEE
Q 016234 91 LGMRYSKITEQIYVGSCIQKEADVETLSKAGIT--------------AVLNFQSGTEAENWGIDYKSINESCQKFNLLMI 156 (393)
Q Consensus 91 ~~~~~~~I~p~LylGs~~~~a~d~~~L~~~GIt--------------~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~ 156 (393)
..+.++.|+++|++.++| +...+.+.++.+. .|.||+.+.... . .. ..=+..
T Consensus 11 ~DLDltYIT~rIIamsfP--a~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd-----~----~~---f~g~V~ 76 (434)
T KOG2283|consen 11 FDLDLTYITSRIIAMSFP--AEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYD-----P----SR---FHGRVA 76 (434)
T ss_pred ccccceeeeeeEEEEeCC--CCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCC-----c----cc---ccccee
Confidence 456788899999999998 4443333333332 366777533211 0 00 112344
Q ss_pred EEeccCCCCccccccHHHHHHHHHHHHhC--CCeEEEEcCCCCChhHHHHHHHHHHHcCCC-HHHHHHHHhhccCCC-CC
Q 016234 157 NYPIRDSDSFDMRKKLPFCVGLLLRLLKK--NHRVFVTCTTGLNRSPASVIAYLHWMTDTS-LHAAYNFVNGLHLCR-PD 232 (393)
Q Consensus 157 ~ipi~D~~~~~l~~~l~~av~fI~~~l~~--g~~VLVHC~aGisRS~tlv~aYLm~~~g~s-l~eA~~~vr~~R~~~-Pn 232 (393)
.++++|..++.| +.+..+++-++..++. ...|.|||++|++|||++++||||...-.. +++|+++...+|... ..
T Consensus 77 ~~~~~Dh~~P~L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~ 155 (434)
T KOG2283|consen 77 RFGFDDHNPPPL-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKS 155 (434)
T ss_pred ecCCCCCCCCcH-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhcccccc
Confidence 588999888887 5688888889999876 457799999999999999999999987655 999999999999543 22
Q ss_pred ccchhHHHHHHHH
Q 016234 233 RPAVAWATRDLIA 245 (393)
Q Consensus 233 ~~fl~~~~~~ll~ 245 (393)
.+.....|..++.
T Consensus 156 ~~~~~PSq~RYv~ 168 (434)
T KOG2283|consen 156 KGVTIPSQRRYVG 168 (434)
T ss_pred CCccCchhhHHHH
Confidence 4444455555544
No 30
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.68 E-value=5.9e-08 Score=79.26 Aligned_cols=67 Identities=25% Similarity=0.462 Sum_probs=52.1
Q ss_pred CccceeeeeCCCCceEEEEeecCCCCcc-cccccccCCCcEEEEEEc--------CCc-eEEEEEEE-cCee--ecCCCC
Q 016234 257 THAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHKGGSRYEVEIRL--------TQG-KYYYKYIV-NGQW--RHSTIS 323 (393)
Q Consensus 257 ~~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~~~g~~~~~~~L--------~~G-~y~YkF~V-DG~w--~~d~~~ 323 (393)
...++|+.-+|.|++|+|+|+|| +|+. ..+|.|.++|.|+++++. +.| .|.|.+.. ||+| +.||-.
T Consensus 4 ~~g~~FrvwAP~A~~V~l~GdFn-~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 4 DGGVTYREWAPNAEEVYLIGDFN-NWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred CCeEEEEEECCCCCEEEEEccCC-CCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 45688988889999999999999 9986 578988888999999874 344 56666666 7776 466644
Q ss_pred C
Q 016234 324 P 324 (393)
Q Consensus 324 p 324 (393)
.
T Consensus 83 ~ 83 (99)
T cd02854 83 K 83 (99)
T ss_pred e
Confidence 3
No 31
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.67 E-value=9.5e-08 Score=89.47 Aligned_cols=91 Identities=8% Similarity=0.042 Sum_probs=60.9
Q ss_pred CeEEEEEe-ccCCCCccccccHHHHHHHHHHHHh--CCCeEEEEcCCCCChhHHHHHHHHHHHc-----CCCHHHHHHHH
Q 016234 152 NLLMINYP-IRDSDSFDMRKKLPFCVGLLLRLLK--KNHRVFVTCTTGLNRSPASVIAYLHWMT-----DTSLHAAYNFV 223 (393)
Q Consensus 152 gi~y~~ip-i~D~~~~~l~~~l~~av~fI~~~l~--~g~~VLVHC~aGisRS~tlv~aYLm~~~-----g~sl~eA~~~v 223 (393)
.+.++++. ..|...++....+.+.++.++.... .+++|+|||.+|+||||++++++++..+ .+++.+++..+
T Consensus 129 ~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~i 208 (231)
T cd00047 129 TVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKEL 208 (231)
T ss_pred EEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35555543 3444433332334445555544432 3689999999999999999999987654 58999999999
Q ss_pred hhccCCCCCccchhHHHHHHHHH
Q 016234 224 NGLHLCRPDRPAVAWATRDLIAM 246 (393)
Q Consensus 224 r~~R~~~Pn~~fl~~~~~~ll~~ 246 (393)
|+.|+ ..+....|+.++.+
T Consensus 209 R~~R~----~~v~~~~Qy~f~~~ 227 (231)
T cd00047 209 RSQRP----GMVQTEEQYIFLYR 227 (231)
T ss_pred Hhccc----cccCCHHHHHHHHH
Confidence 99984 23334566666653
No 32
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.56 E-value=1.1e-07 Score=74.95 Aligned_cols=59 Identities=32% Similarity=0.516 Sum_probs=49.6
Q ss_pred ccceeeeeCCCCceEEEEeecCCC-Ccc-ccccc-ccCCCcEEEEEE--cCCceEEEEEEEcCee
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGN-WKD-PIKAT-HKGGSRYEVEIR--LTQGKYYYKYIVNGQW 317 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~-W~~-~~~m~-~~~~g~~~~~~~--L~~G~y~YkF~VDG~w 317 (393)
..++|+.-++.|++|.|.+.|+ + |.. .++|. +.++|.|+++++ +++|.+.|+|+|+|..
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~-~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFN-GSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETT-TSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEee-ecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5789988889999999999999 7 765 68898 578899999999 8889889999998654
No 33
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.48 E-value=1.1e-06 Score=83.76 Aligned_cols=69 Identities=9% Similarity=0.090 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhC----CCeEEEEcCCCCChhHHHHHHHHHHH-----cCCCHHHHHHHHhhccCCCCCccchhHHHHHH
Q 016234 173 PFCVGLLLRLLKK----NHRVFVTCTTGLNRSPASVIAYLHWM-----TDTSLHAAYNFVNGLHLCRPDRPAVAWATRDL 243 (393)
Q Consensus 173 ~~av~fI~~~l~~----g~~VLVHC~aGisRS~tlv~aYLm~~-----~g~sl~eA~~~vr~~R~~~Pn~~fl~~~~~~l 243 (393)
...++|+...... +++|+|||.+|+||||++++++++.. ...++.+++..||+.|+. .+....|+.+
T Consensus 176 ~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~----~v~~~~Qy~f 251 (258)
T smart00194 176 KSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG----MVQTEEQYIF 251 (258)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc----ccCCHHHHHH
Confidence 3444454444332 68999999999999999999988754 368999999999998853 2333556666
Q ss_pred HH
Q 016234 244 IA 245 (393)
Q Consensus 244 l~ 245 (393)
+.
T Consensus 252 ~~ 253 (258)
T smart00194 252 LY 253 (258)
T ss_pred HH
Confidence 54
No 34
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.32 E-value=9.4e-07 Score=77.59 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=49.2
Q ss_pred hhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHH
Q 016234 144 INESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWM 211 (393)
Q Consensus 144 ~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~ 211 (393)
..+.++..|+.|+++|+.|...+.- +.+++.++++... .++..+.+||.+|.|||.+..+.|.|.+
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDP-EDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---H-HHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCH-HHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577788999999999999765543 5688888888887 6678899999999999999988888753
No 35
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.25 E-value=4.6e-06 Score=85.21 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=44.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHcC-CCHHHHHHHHhhccCCCCCccchhHHHHHHHHHHH
Q 016234 189 VFVTCTTGLNRSPASVIAYLHWMTD-TSLHAAYNFVNGLHLCRPDRPAVAWATRDLIAMVE 248 (393)
Q Consensus 189 VLVHC~aGisRS~tlv~aYLm~~~g-~sl~eA~~~vr~~R~~~Pn~~fl~~~~~~ll~~~~ 248 (393)
++|||.+|+||||+++++++|...+ .++++.+.-+|..| ++.=+....|++.|..+.
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qR---ng~MVQt~eQy~~l~~~~ 526 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSR---NNRMLEDASQFVQLKAMQ 526 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcC---CccccccHHHHHHHHHHH
Confidence 4799999999999999999997554 67888888888766 433455577888887664
No 36
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.13 E-value=1.2e-05 Score=69.52 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred ccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccC-----CC-CccccccHHHHHHHHHHHHhC
Q 016234 112 ADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRD-----SD-SFDMRKKLPFCVGLLLRLLKK 185 (393)
Q Consensus 112 ~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D-----~~-~~~l~~~l~~av~fI~~~l~~ 185 (393)
.-.+.-.+.|-+++|++........... .... -+++.+-+.| .. ...-..+....++|++++-+
T Consensus 23 ~~ae~~~rh~~t~mlsl~a~~t~~~~pa------~~~~---erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~- 92 (172)
T COG5350 23 VIAETAARHGPTHMLSLLAKGTYFHRPA------VIAA---ERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPR- 92 (172)
T ss_pred HHHHHHhhcCCceEEEeecccccccCcc------ccch---hhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCcc-
Confidence 3344556779999999987543221110 0001 1233444444 21 11223467888899888744
Q ss_pred CCeEEEEcCCCCChhHHHHHH-HHHHHcCCCHHHHHHHHhhccCCC-CCccchhH
Q 016234 186 NHRVFVTCTTGLNRSPASVIA-YLHWMTDTSLHAAYNFVNGLHLCR-PDRPAVAW 238 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~a-YLm~~~g~sl~eA~~~vr~~R~~~-Pn~~fl~~ 238 (393)
-.++||||.+|+|||+++++. -|.....+.-.+..+.++..+|.. ||...+.-
T Consensus 93 ~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 93 FAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred ccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 468999999999999876654 555666899999999999998875 99988753
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.09 E-value=7.3e-06 Score=78.02 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=76.9
Q ss_pred eeC-CeEEcCCcCCcccHH--HHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeE---EEEEeccCCCCccccc-
Q 016234 98 ITE-QIYVGSCIQKEADVE--TLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLL---MINYPIRDSDSFDMRK- 170 (393)
Q Consensus 98 I~p-~LylGs~~~~a~d~~--~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~---y~~ipi~D~~~~~l~~- 170 (393)
|.+ .+|.+++| ...+.. .+..++++.++++..+.... ...+..+-+. ...+...+........
T Consensus 50 i~~~~~~Rs~~p-~~~~~~~~~~~~~~l~~~i~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (249)
T COG2365 50 IIPIIDYRSGQP-VPVQPDPELLDALYLKTIINLRDESNTN---------VELYTDHLINWDKAAIIMFESYRSFPTRED 119 (249)
T ss_pred ccceeEcCCCCc-ccccCCccccccccccccccccccchhh---------hhhhhhhhhhhccccchhhhhhccCccchh
Confidence 444 58889988 666665 67788999999999722111 1111111111 1111122222111111
Q ss_pred cHHHHHHHHHHHHhCC-CeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCCCC
Q 016234 171 KLPFCVGLLLRLLKKN-HRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLCRP 231 (393)
Q Consensus 171 ~l~~av~fI~~~l~~g-~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~~P 231 (393)
..+....++.-.+..+ ++||+||++|..|+|.++++|++...+.....+-+++...++..+
T Consensus 120 ~~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~ 181 (249)
T COG2365 120 AAERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEP 181 (249)
T ss_pred hHHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccch
Confidence 2344445555555554 899999999999999999999999988888888888886665443
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.03 E-value=1.9e-05 Score=73.24 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEcCCCCChhHHHHHHHHHHHc-----CCCHHHHHHHHhhccCCCCCccchh-HHHH
Q 016234 172 LPFCVGLLLRLLKK----NHRVFVTCTTGLNRSPASVIAYLHWMT-----DTSLHAAYNFVNGLHLCRPDRPAVA-WATR 241 (393)
Q Consensus 172 l~~av~fI~~~l~~----g~~VLVHC~aGisRS~tlv~aYLm~~~-----g~sl~eA~~~vr~~R~~~Pn~~fl~-~~~~ 241 (393)
....+++++..... .++|+|||..|+|||++++++.++..+ ..++.+++..+|+.|+ +++. ..|+
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~-----~~i~~~~qy 226 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRP-----GAIQSPEQY 226 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTST-----TSSSSHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCC-----CccCCHHHH
Confidence 44555555554433 489999999999999999999888643 4789999999998884 2332 4555
Q ss_pred HHHH
Q 016234 242 DLIA 245 (393)
Q Consensus 242 ~ll~ 245 (393)
.++.
T Consensus 227 ~f~~ 230 (235)
T PF00102_consen 227 RFCY 230 (235)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 39
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.00 E-value=5.1e-05 Score=74.13 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=36.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHH-----cCCCHHHHHHHHhhccC
Q 016234 186 NHRVFVTCTTGLNRSPASVIAYLHWM-----TDTSLHAAYNFVNGLHL 228 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~aYLm~~-----~g~sl~eA~~~vr~~R~ 228 (393)
.++|+|||.+|+||||++++...+.. ...++.+++..+|+.|+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~ 268 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKY 268 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCc
Confidence 47999999999999999988876653 24788889999998885
No 40
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.99 E-value=5.3e-05 Score=74.22 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHc-----CCCHHHHHHHHhhccC
Q 016234 186 NHRVFVTCTTGLNRSPASVIAYLHWMT-----DTSLHAAYNFVNGLHL 228 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~aYLm~~~-----g~sl~eA~~~vr~~R~ 228 (393)
.++|+|||.+|+||||++++...+..+ ..++.+++..+|+.|+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~ 276 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRH 276 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Confidence 369999999999999999888776533 4678888888888885
No 41
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.95 E-value=5e-05 Score=75.05 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=35.6
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHH-----cCCCHHHHHHHHhhccCC
Q 016234 187 HRVFVTCTTGLNRSPASVIAYLHWM-----TDTSLHAAYNFVNGLHLC 229 (393)
Q Consensus 187 ~~VLVHC~aGisRS~tlv~aYLm~~-----~g~sl~eA~~~vr~~R~~ 229 (393)
++|+|||.+|+||||++++...+.. ...++.+++..+|+.|+.
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~ 295 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHS 295 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 6999999999999999998765542 257888999999988853
No 42
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.85 E-value=6.8e-05 Score=73.76 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=36.2
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHH-----cCCCHHHHHHHHhhccCC
Q 016234 187 HRVFVTCTTGLNRSPASVIAYLHWM-----TDTSLHAAYNFVNGLHLC 229 (393)
Q Consensus 187 ~~VLVHC~aGisRS~tlv~aYLm~~-----~g~sl~eA~~~vr~~R~~ 229 (393)
++|+|||.+|+||||+++++.++.. ...++.+++..+|+.|+.
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~ 277 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHA 277 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 6999999999999999998876543 257889999999988863
No 43
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.82 E-value=0.00012 Score=59.82 Aligned_cols=55 Identities=29% Similarity=0.535 Sum_probs=42.7
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc-cccccccC-CCcEEEEEE-cCCceEEEEEEEc
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHKG-GSRYEVEIR-LTQGKYYYKYIVN 314 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~~-~g~~~~~~~-L~~G~y~YkF~VD 314 (393)
..++|+...+.|++|.|.++|+ +|.. ..+|.+.. .|.|++.+. +++|.+ |+|.|+
T Consensus 21 ~~~~frv~aP~A~~V~l~~~~~-~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~-Y~~~v~ 78 (106)
T cd02855 21 SGVRFAVWAPNARRVSVVGDFN-GWDGRRHPMRRRGDSGVWELFIPGLGEGEL-YKYEIL 78 (106)
T ss_pred CCEEEEEECCCCCEEEEEEECC-CCCCcceecEECCCCCEEEEEECCCCCCCE-EEEEEE
Confidence 4578887779999999999999 8964 56788766 899999886 666643 555564
No 44
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.78 E-value=6.7e-05 Score=61.11 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=52.2
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCc-----ccccccccCCCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCCee
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWK-----DPIKATHKGGSRYEVEIR-LTQGKYYYKYIVNGQ-----WRHSTISPTE 326 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~-----~~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG~-----w~~d~~~p~~ 326 (393)
..++|...++.|++|.|.. |+ +|. ..++|.++.+|.|++.+. +.+|. .|+|.|+|. ...||-....
T Consensus 8 ~~~~F~vwAP~A~~V~L~l-~~-~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 8 EKTTFRLWAPTAQSVKLLL-YD-KDDQDKVLETVQMKRGENGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred CCEEEEEECCCCcEEEEEE-Ec-CCCCCCcceeEeeecCCCCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeE
Confidence 3578977779999999998 98 886 357898888999999997 55565 488889875 7788866533
No 45
>PHA02738 hypothetical protein; Provisional
Probab=97.78 E-value=0.00011 Score=72.53 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=35.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHc-----CCCHHHHHHHHhhccC
Q 016234 186 NHRVFVTCTTGLNRSPASVIAYLHWMT-----DTSLHAAYNFVNGLHL 228 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~aYLm~~~-----g~sl~eA~~~vr~~R~ 228 (393)
.++|+|||.+|+||||++++.-.+..+ ..++.+++..+|+.|+
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~ 274 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRY 274 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhh
Confidence 368999999999999998877655432 4688889999998885
No 46
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.76 E-value=6.8e-05 Score=61.47 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=45.5
Q ss_pred cceeeeeCCCCceEEEEeecCCCCc--ccccccccCCCcEEEEEE-cCCceEEEEEEEcCee
Q 016234 259 AVTFVWNGQEGEDVLLVGDFTGNWK--DPIKATHKGGSRYEVEIR-LTQGKYYYKYIVNGQW 317 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~GsF~~~W~--~~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG~w 317 (393)
.++|+.-++.|++|.|.. |+ +|. ..++|.++.+|.|++.+. +.+|. .|+|+|||.+
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~-~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~~ 68 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FD-EDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGPY 68 (103)
T ss_pred CeEEEEECCCCCEEEEEE-Ee-CCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCcc
Confidence 578877778999999999 77 665 357898888899999996 66665 7999999953
No 47
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.71 E-value=6.8e-05 Score=79.29 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=53.7
Q ss_pred CccceeeeeCCCCceEEEEeecCCCCcc-ccccccc-CCCcEEEEEE-cCCceEEEEEEEcCe-----eecCCCCC
Q 016234 257 THAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHK-GGSRYEVEIR-LTQGKYYYKYIVNGQ-----WRHSTISP 324 (393)
Q Consensus 257 ~~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~-~~g~~~~~~~-L~~G~y~YkF~VDG~-----w~~d~~~p 324 (393)
...|+|..-+|.++.|.|+|+|| +|+. .++|..+ +.|.|++++. +++| +.|||.|++. ++.||..-
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn-~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~ 108 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFN-DWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYAR 108 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecC-CccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhh
Confidence 45789988889999999999999 9998 5555433 5599999999 9999 9999999754 37777544
No 48
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.69 E-value=0.00019 Score=60.63 Aligned_cols=55 Identities=29% Similarity=0.573 Sum_probs=44.8
Q ss_pred cceeeeeC---CCCceEEEEee---cCCCCcc--ccccccc--CCCcEEEEEEcCCc-eEEEEEEEc
Q 016234 259 AVTFVWNG---QEGEDVLLVGD---FTGNWKD--PIKATHK--GGSRYEVEIRLTQG-KYYYKYIVN 314 (393)
Q Consensus 259 ~v~f~w~~---~~~~~V~l~Gs---F~~~W~~--~~~m~~~--~~g~~~~~~~L~~G-~y~YkF~VD 314 (393)
.|+|.... ..++.|+|+|+ +. +|+. .++|... +++.|++++.||.+ .++|||++.
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG-~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLG-NWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhC-CCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 46666653 46889999999 88 9985 6788766 56789999999998 799999993
No 49
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.68 E-value=0.00014 Score=79.22 Aligned_cols=129 Identities=11% Similarity=0.145 Sum_probs=78.1
Q ss_pred CeEE---cCCcCCcccH-HHHHhCCCceEEecCCCCC------ccccCCChh---------------hhhhHh-------
Q 016234 101 QIYV---GSCIQKEADV-ETLSKAGITAVLNFQSGTE------AENWGIDYK---------------SINESC------- 148 (393)
Q Consensus 101 ~Lyl---Gs~~~~a~d~-~~L~~~GIt~Vvnl~~~~~------~~~~~~~~~---------------~~~~~~------- 148 (393)
+.|| |..|.+..|+ ....+.|++.|+-|+.+.| ..+|.-... .....|
T Consensus 938 ~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t~~y~tr~m~l 1017 (1144)
T KOG0792|consen 938 NRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQTTCYVTREMTL 1017 (1144)
T ss_pred EEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEecccccEEEEeEEE
Confidence 4565 4444455566 4457889999999998876 223421100 000001
Q ss_pred ------hhCCeEEEE-EeccCCCCccccccHHHHHHHHHHHHhC-CCeEEEEcCCCCChhHHHHHHHHHHHc-----CCC
Q 016234 149 ------QKFNLLMIN-YPIRDSDSFDMRKKLPFCVGLLLRLLKK-NHRVFVTCTTGLNRSPASVIAYLHWMT-----DTS 215 (393)
Q Consensus 149 ------~~~gi~y~~-ipi~D~~~~~l~~~l~~av~fI~~~l~~-g~~VLVHC~aGisRS~tlv~aYLm~~~-----g~s 215 (393)
++..|.|+. ...+|+..++-...|-+.++.|...+.. +-+|+|||.||+||||+++++=+|... -+.
T Consensus 1018 ~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vd 1097 (1144)
T KOG0792|consen 1018 KDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVD 1097 (1144)
T ss_pred eeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCC
Confidence 111222222 1234555555444555555555555554 569999999999999999876555432 578
Q ss_pred HHHHHHHHhhccCC
Q 016234 216 LHAAYNFVNGLHLC 229 (393)
Q Consensus 216 l~eA~~~vr~~R~~ 229 (393)
.-+.++.+|..|-+
T Consensus 1098 i~divr~mR~QR~~ 1111 (1144)
T KOG0792|consen 1098 ILDIVRTMRDQRAM 1111 (1144)
T ss_pred HHHHHHHHHHHHhh
Confidence 88999999998864
No 50
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.68 E-value=0.00014 Score=58.55 Aligned_cols=54 Identities=30% Similarity=0.478 Sum_probs=43.7
Q ss_pred cceeeee--CCCCceEEEEee---cCCCCcc--cccccccCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 259 AVTFVWN--GQEGEDVLLVGD---FTGNWKD--PIKATHKGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 259 ~v~f~w~--~~~~~~V~l~Gs---F~~~W~~--~~~m~~~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
+|+|... -..+++|+|+|+ |. +|++ .++|...+++.|++++.||++ .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG-~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELG-NWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhC-CCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 4566665 345789999995 88 9986 578887777899999999987 69999997
No 51
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.57 E-value=0.00011 Score=73.48 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=78.2
Q ss_pred eEEcC-CcCCcccHHHHHhCC--CceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCC---CccccccHH-H
Q 016234 102 IYVGS-CIQKEADVETLSKAG--ITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSD---SFDMRKKLP-F 174 (393)
Q Consensus 102 LylGs-~~~~a~d~~~L~~~G--It~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~---~~~l~~~l~-~ 174 (393)
+.-|+ +.+....+..|+.+| |--+++|....- ++ .....+..|+.|+.+-..... .......|. .
T Consensus 41 ~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~r--yy------~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~ 112 (393)
T KOG2386|consen 41 TFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLR--YY------DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKL 112 (393)
T ss_pred CCCCccccCHHHHHHHHHhcCceEEEEEeccceee--ee------ccccccccceeEEEeccCCcccCCCccchHHHHHH
Confidence 44455 332344456666554 556777776542 11 123345688998887665432 222212222 2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccC
Q 016234 175 CVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHL 228 (393)
Q Consensus 175 av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~ 228 (393)
+-.|.......++=|+|||+.|++|++-|+++|||...+++..+|+..+...|+
T Consensus 113 v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~ 166 (393)
T KOG2386|consen 113 VKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARP 166 (393)
T ss_pred HHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCC
Confidence 333444444557889999999999999999999999999999999999999885
No 52
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.54 E-value=0.0002 Score=57.82 Aligned_cols=56 Identities=30% Similarity=0.567 Sum_probs=44.8
Q ss_pred ccceeeee--CCCCceEEEEeecCC--CCcc--cccccccC----CCcEEEEEEcCCc-eEEEEEEE
Q 016234 258 HAVTFVWN--GQEGEDVLLVGDFTG--NWKD--PIKATHKG----GSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 258 ~~v~f~w~--~~~~~~V~l~GsF~~--~W~~--~~~m~~~~----~g~~~~~~~L~~G-~y~YkF~V 313 (393)
..|+|... -..++.|+|+||... +|+. .++|.... ...|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 35677765 356899999999974 7996 78888653 3799999999998 69999999
No 53
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.50 E-value=0.00019 Score=71.79 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=40.4
Q ss_pred HHHHHHHHHH------hCCCeEEEEcCCCCChhHHHHHHHHHHH----c----CCCHHHHHHHHhhccC
Q 016234 174 FCVGLLLRLL------KKNHRVFVTCTTGLNRSPASVIAYLHWM----T----DTSLHAAYNFVNGLHL 228 (393)
Q Consensus 174 ~av~fI~~~l------~~g~~VLVHC~aGisRS~tlv~aYLm~~----~----g~sl~eA~~~vr~~R~ 228 (393)
.++.|+++.- ...|+|.|||.|||||++++++.=++.. . .++....+++||+.|.
T Consensus 433 ~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRS 501 (600)
T KOG0790|consen 433 GVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRS 501 (600)
T ss_pred HHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhc
Confidence 3455555443 2347999999999999999876655432 2 4688999999999984
No 54
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.50 E-value=0.00019 Score=77.49 Aligned_cols=65 Identities=23% Similarity=0.443 Sum_probs=52.2
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc-cccccccCCCcEEEEEE-cCCceEEEEEEE---cCeee--cCCCCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHKGGSRYEVEIR-LTQGKYYYKYIV---NGQWR--HSTISP 324 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~~~g~~~~~~~-L~~G~y~YkF~V---DG~w~--~d~~~p 324 (393)
..|+|+.-+|.|++|+|+|+|| +|+. ..+|.+..+|+|++.++ +.+|. .|||.| ||.+. .||-..
T Consensus 138 ~Gv~FaVWAPnA~~VsVvGDFN-~Wdg~~~pM~~~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~ 209 (730)
T PRK12568 138 PGVRFAVWAPHAQRVAVVGDFN-GWDVRRHPMRQRIGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVAR 209 (730)
T ss_pred CcEEEEEECCCCCEEEEEEecC-CCCccceecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcce
Confidence 4678988889999999999999 9986 67888778899999996 77773 677777 67664 677544
No 55
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.48 E-value=0.00033 Score=75.44 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=50.8
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc-cccccccCCCcEEEEEE-cCCc-eEEEEEEE-cCee--ecCCCCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHKGGSRYEVEIR-LTQG-KYYYKYIV-NGQW--RHSTISP 324 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~~~g~~~~~~~-L~~G-~y~YkF~V-DG~w--~~d~~~p 324 (393)
..|+|+..+|.|++|+|+|+|| +|+. ..+|.+..+|.|++++. +.+| .|.|++.. +|.| ..||-..
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn-~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~ 109 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFN-DWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAF 109 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecC-CCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceE
Confidence 3789988889999999999999 9986 57888878899999998 4444 56666644 4665 4566444
No 56
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.39 E-value=0.0004 Score=58.39 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=47.7
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCc---c--cccccccC---CCcEEEEEE-cCCceEEEEEEEcCeeecCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWK---D--PIKATHKG---GSRYEVEIR-LTQGKYYYKYIVNGQWRHST 321 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~---~--~~~m~~~~---~g~~~~~~~-L~~G~y~YkF~VDG~w~~d~ 321 (393)
..++|..-++.|++|.|.. |+ +|+ + .++|.+.. +|+|++.+. +.+|. .|+|.|+|.|..++
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~-~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~ 76 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FD-PGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ 76 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-Ee-CCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence 3578987779999999999 98 786 2 46776544 699999997 67786 79999999865444
No 57
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.37 E-value=0.00055 Score=70.24 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=80.2
Q ss_pred eeeeCCeEEcCCcCCcccH--HHH--HhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccC--CCCcccc
Q 016234 96 SKITEQIYVGSCIQKEADV--ETL--SKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRD--SDSFDMR 169 (393)
Q Consensus 96 ~~I~p~LylGs~~~~a~d~--~~L--~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D--~~~~~l~ 169 (393)
..+..+||+|... ..-.. ..+ ....+..||++....... ........++++|+.. ....+|+
T Consensus 290 ~~~~~~i~ig~~~-~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~-----------~~~~~~~~~L~l~i~~~K~gs~~LR 357 (451)
T PF04179_consen 290 DPGTTGIYIGKIS-SNLAISKAQLPDLESEFDCVINCSESPTPK-----------ESWPKSPKYLHLPIPSSKKGSRDLR 357 (451)
T ss_pred ccCCCCeEEeccC-CccccchhhccccCCCcCEEEEcCCCcccc-----------cccCCCceEEeCcCCCCcccHHHHH
Confidence 3456789999865 31111 111 244788999998776421 0112567899999976 3456788
Q ss_pred ccHHHHHHHHHHHHhC--CCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 170 KKLPFCVGLLLRLLKK--NHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 170 ~~l~~av~fI~~~l~~--g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
..|++++.|+...+.+ +.+|+|+|..|...|.++++|.|++.+..
T Consensus 358 ~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~ 404 (451)
T PF04179_consen 358 KALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDD 404 (451)
T ss_pred HHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCc
Confidence 8999999999999988 89999999999999999999999998754
No 58
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.26 E-value=0.00062 Score=73.82 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=48.5
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc-cccccccCCCcEEEEEEc-------CCceEEEEEEEc---Ce--eecCCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHKGGSRYEVEIRL-------TQGKYYYKYIVN---GQ--WRHSTI 322 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~~~g~~~~~~~L-------~~G~y~YkF~VD---G~--w~~d~~ 322 (393)
..++|+.-+|.|++|+|+|+|| +|+. ..+|.+.+.|+|++.|+- +.| ..|||.|. |. .+.||-
T Consensus 114 ~g~~FrvWAP~A~~V~LvGdFN-~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpy 189 (758)
T PLN02447 114 GGITYREWAPGAKAAALIGDFN-NWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAW 189 (758)
T ss_pred CCEEEEEECCCCCEEEEEEecC-CCCCCccCceeCCCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCch
Confidence 3678887779999999999999 9986 568988788999999863 334 36777774 44 456663
No 59
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.23 E-value=0.00025 Score=66.81 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHh---CCCeEEEEcCCCCChhHHHHHHHHHHHc
Q 016234 172 LPFCVGLLLRLLK---KNHRVFVTCTTGLNRSPASVIAYLHWMT 212 (393)
Q Consensus 172 l~~av~fI~~~l~---~g~~VLVHC~aGisRS~tlv~aYLm~~~ 212 (393)
+.+..++++.... ++++++|||.||+|||||+++.-.+...
T Consensus 201 i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 201 IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 4556677776652 4689999999999999999887666544
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.22 E-value=0.001 Score=72.64 Aligned_cols=64 Identities=22% Similarity=0.428 Sum_probs=49.4
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc-ccccccc-CCCcEEEEEE-cCCc-eEEEEEEEc-Cee--ecCCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHK-GGSRYEVEIR-LTQG-KYYYKYIVN-GQW--RHSTI 322 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~-~~g~~~~~~~-L~~G-~y~YkF~VD-G~w--~~d~~ 322 (393)
..|+|+..+|.|++|.|+|+|| +|+. ..+|.+. .+|.|++++. +++| .|.|++..+ |.| ..||-
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn-~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPY 201 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFN-GWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPY 201 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcC-CCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCc
Confidence 4688998889999999999999 9986 5688877 6799999986 6666 566666654 454 44543
No 61
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.19 E-value=0.00093 Score=71.78 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=55.1
Q ss_pred cceeeeeCCCCceEEEEeecCCCCcc-cccccccCCCcEEEEEE-cCCceEEEEEEEcC---ee--ecCCCCCeeeCCCC
Q 016234 259 AVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHKGGSRYEVEIR-LTQGKYYYKYIVNG---QW--RHSTISPTERDDKG 331 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG---~w--~~d~~~p~~~d~~G 331 (393)
.++|+.-+|.|++|+|+|+|| +|+. ..+|.+.++|.|++.++ +.+| ..|||.|++ .+ +.||-..... ..+
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn-~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~-~~~ 115 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFN-DWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFE-VRP 115 (639)
T ss_pred cEEEEEECCCCCEEEEEEecC-CcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEe-cCC
Confidence 578987789999999999999 9986 57898778899999997 4555 468888865 43 5666544222 123
Q ss_pred CcceEE
Q 016234 332 NVNNII 337 (393)
Q Consensus 332 ~~nnvi 337 (393)
+..++|
T Consensus 116 ~~~svv 121 (639)
T PRK14706 116 NTASII 121 (639)
T ss_pred CCceEE
Confidence 345554
No 62
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=97.19 E-value=0.0034 Score=51.07 Aligned_cols=54 Identities=28% Similarity=0.561 Sum_probs=42.3
Q ss_pred ceeeeeC---CCCceEEEEeecCC--CCcc--cccccccCCCcEEEEEEcCCc--eEEEEEEE
Q 016234 260 VTFVWNG---QEGEDVLLVGDFTG--NWKD--PIKATHKGGSRYEVEIRLTQG--KYYYKYIV 313 (393)
Q Consensus 260 v~f~w~~---~~~~~V~l~GsF~~--~W~~--~~~m~~~~~g~~~~~~~L~~G--~y~YkF~V 313 (393)
|+|.... ..++.|+|+|+-.. +|+. .++|...++..|++++.+|++ .++|||++
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 4565552 35789999998532 8985 678887777899999999986 59999999
No 63
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.13 E-value=0.0022 Score=50.56 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=48.4
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEEEEEc-CeeecCCCCCe
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYKYIVN-GQWRHSTISPT 325 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~YkF~VD-G~w~~d~~~p~ 325 (393)
..++|..-++.|++|.|.. | +|. .++|.++.+|.|++++...+|. .|+|.|+ +..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l-~--~~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRL-D--DGE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEe-c--CCC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 4688988889999999996 3 343 4889888899999999733665 4777777 46888887664
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.08 E-value=0.00093 Score=75.95 Aligned_cols=63 Identities=24% Similarity=0.513 Sum_probs=49.4
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc-ccccccc-CCCcEEEEEE-cCCceEEEEEEEc---Cee--ecCCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHK-GGSRYEVEIR-LTQGKYYYKYIVN---GQW--RHSTI 322 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~-~~g~~~~~~~-L~~G~y~YkF~VD---G~w--~~d~~ 322 (393)
..|+|..-+|.|+.|+|+|+|| +|+. ..+|.+. .+|+|++.++ +.+|. .|||.|+ |.| ..||-
T Consensus 638 ~Gv~F~VWAP~A~~V~vvgdFN-~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPy 708 (1224)
T PRK14705 638 DGVSFAVWAPNAQAVRVKGDFN-GWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPL 708 (1224)
T ss_pred CeEEEEEECCCCCEEEEEEEec-CCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcc
Confidence 4678887789999999999999 9986 5678763 5699999996 78885 6888885 444 45553
No 65
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.97 E-value=0.0027 Score=51.75 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=39.6
Q ss_pred eCCCCceEEEEee---cCCCCcc--cccccccCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 265 NGQEGEDVLLVGD---FTGNWKD--PIKATHKGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 265 ~~~~~~~V~l~Gs---F~~~W~~--~~~m~~~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
+-..++.+.|+|+ .. +|+. .++|...++..|++++.||++ .++|||+|
T Consensus 9 ~t~~Ge~l~v~Gs~~~LG-~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 9 PTQFGEAVYISGNCNQLG-NWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred EcCCCCEEEEEeCcHHHC-CCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 3355789999998 55 8986 667876677899999999987 69999998
No 66
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.94 E-value=0.0025 Score=67.36 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=55.7
Q ss_pred ceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEE-cCCceEEEEEEEcC-eeecCCCCCeeeCCCCCcceEE
Q 016234 260 VTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIR-LTQGKYYYKYIVNG-QWRHSTISPTERDDKGNVNNII 337 (393)
Q Consensus 260 v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG-~w~~d~~~p~~~d~~G~~nnvi 337 (393)
|+|+.-+|.|++|.|.+ + + +..+|.++++|+|+++++ +.+| +.|+|.||| .-+.||.......+ .+..++|
T Consensus 1 v~FrlwAP~A~~V~L~l--~--~-~~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~-~~~~S~V 73 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRL--N--G-ALHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDG-VHGPSQV 73 (542)
T ss_pred CEEEEECCCCCEEEEEe--C--C-CEEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccC-CCCCeEE
Confidence 57877679999999997 2 3 348899888999999997 7788 789999999 68899977754322 2234666
Q ss_pred Ee
Q 016234 338 IV 339 (393)
Q Consensus 338 ~v 339 (393)
..
T Consensus 74 ~d 75 (542)
T TIGR02402 74 VD 75 (542)
T ss_pred ec
Confidence 54
No 67
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.91 E-value=0.0055 Score=50.32 Aligned_cols=57 Identities=32% Similarity=0.555 Sum_probs=43.4
Q ss_pred Cccceeeee--CCCCceEEEEeecCC--CCcc--ccccccc----CCCcEEEEEEcCCc-eEEEEEEE
Q 016234 257 THAVTFVWN--GQEGEDVLLVGDFTG--NWKD--PIKATHK----GGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 257 ~~~v~f~w~--~~~~~~V~l~GsF~~--~W~~--~~~m~~~----~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
+..|+|... -..++.|+|+|+-.. +|+. .++|... +++.|++++.||.+ .++|||++
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 456777765 356789999998643 7986 6677532 35789999999988 59999997
No 68
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.87 E-value=0.005 Score=49.42 Aligned_cols=54 Identities=19% Similarity=0.433 Sum_probs=42.0
Q ss_pred cceeeee--CCCCceEEEEeecCC--CCcccccccccCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 259 AVTFVWN--GQEGEDVLLVGDFTG--NWKDPIKATHKGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 259 ~v~f~w~--~~~~~~V~l~GsF~~--~W~~~~~m~~~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
.|+|... -..++.++|+|+-.. +|++..+|.-. .+.|+++++||.+ .++|||++
T Consensus 3 ~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~-~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 3 KLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT-ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC-CCCEEEEEEeCCCCcEEEEEEE
Confidence 4566655 456789999997632 89987777644 4579999999987 69999999
No 69
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=96.85 E-value=0.004 Score=50.67 Aligned_cols=55 Identities=25% Similarity=0.423 Sum_probs=42.0
Q ss_pred ccceeeee---CCCCceEEEEe---ecCCCCccc---ccccc-cCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 258 HAVTFVWN---GQEGEDVLLVG---DFTGNWKDP---IKATH-KGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 258 ~~v~f~w~---~~~~~~V~l~G---sF~~~W~~~---~~m~~-~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
.+|+|... -..+++|+|+| ++. +|+.. +.|.. ..++.|+++++||+| .++|||++
T Consensus 3 v~v~f~v~~~~t~~G~~v~v~Gs~~~LG-~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 3 VPQTFVVKNVPTTIGETVYITGSRAELG-NWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred eEEEEEEcccccCCCCEEEEEeChHHhC-CCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 57888874 24578999999 777 99862 33332 235789999999998 59999999
No 70
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=96.76 E-value=0.009 Score=48.98 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=43.8
Q ss_pred ccceeeeeC----CCCceEEEEeecCC--CCccc----c-cccccCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 258 HAVTFVWNG----QEGEDVLLVGDFTG--NWKDP----I-KATHKGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 258 ~~v~f~w~~----~~~~~V~l~GsF~~--~W~~~----~-~m~~~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
.+|+|+... ..+++|+|+|+-.. +|+.. + +|.......|+++++||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 588999862 35789999997553 89862 2 6654556789999999998 69999999
No 71
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.67 E-value=0.0049 Score=49.60 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=42.6
Q ss_pred cceeeee--C-CCCceEEEEeecCC--CCcccccccccCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 259 AVTFVWN--G-QEGEDVLLVGDFTG--NWKDPIKATHKGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 259 ~v~f~w~--~-~~~~~V~l~GsF~~--~W~~~~~m~~~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
+|+|... . .+.+.++|+|+=.. +|+...+|...+++.|++++.||.+ .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4666665 2 23567889996542 7988888876677899999999998 49999998
No 72
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.66 E-value=0.0054 Score=49.08 Aligned_cols=48 Identities=29% Similarity=0.532 Sum_probs=39.9
Q ss_pred CCCCceEEEEeecCC--CCcc--cccccccC-CCcEEEEEEcCC--c-eEEEEEEE
Q 016234 266 GQEGEDVLLVGDFTG--NWKD--PIKATHKG-GSRYEVEIRLTQ--G-KYYYKYIV 313 (393)
Q Consensus 266 ~~~~~~V~l~GsF~~--~W~~--~~~m~~~~-~g~~~~~~~L~~--G-~y~YkF~V 313 (393)
-..++.+.|+|+... +|+. .++|...+ ++.|++++.+|+ + .++|||++
T Consensus 10 t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 10 TQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 356889999998753 7985 67887666 789999999999 6 69999998
No 73
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.61 E-value=0.0043 Score=66.62 Aligned_cols=65 Identities=20% Similarity=0.424 Sum_probs=50.4
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc-cccccccC-CCcEEEEEE-cCCceEEEEEEEc---Ce--eecCCCCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD-PIKATHKG-GSRYEVEIR-LTQGKYYYKYIVN---GQ--WRHSTISP 324 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~~~~-~g~~~~~~~-L~~G~y~YkF~VD---G~--w~~d~~~p 324 (393)
..++|+.-+|.|++|.|+|+|| +|.. ..+|.+.. +|.|++.+. +.+|. .|||.|+ |. ++.||-..
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn-~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFN-YWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecC-CCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEe
Confidence 4678887779999999999999 9976 56787664 799999987 45665 5888884 54 57788544
No 74
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=96.50 E-value=0.0091 Score=58.87 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=49.9
Q ss_pred EeccCCCCccccccHHHHHHHHHHHHhC-CCeEEEEcCCCCChhHHHHHHHHHHHc-CC-CHHHHHHHHhhccCCCCCcc
Q 016234 158 YPIRDSDSFDMRKKLPFCVGLLLRLLKK-NHRVFVTCTTGLNRSPASVIAYLHWMT-DT-SLHAAYNFVNGLHLCRPDRP 234 (393)
Q Consensus 158 ipi~D~~~~~l~~~l~~av~fI~~~l~~-g~~VLVHC~aGisRS~tlv~aYLm~~~-g~-sl~eA~~~vr~~R~~~Pn~~ 234 (393)
.-..|+..+.-...+-+.+..+.+.+.. .++++|||.+|+|||||.++.--+..+ +- ...+-+..|.+.|..++-..
T Consensus 258 ~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mV 337 (374)
T KOG0791|consen 258 TAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMV 337 (374)
T ss_pred eeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcccccc
Confidence 4455666553223344444444444433 579999999999999999888666544 32 25555666655554443221
Q ss_pred chhHHHHHHHH
Q 016234 235 AVAWATRDLIA 245 (393)
Q Consensus 235 fl~~~~~~ll~ 245 (393)
....|+-+|.
T Consensus 338 -qte~Qyvfl~ 347 (374)
T KOG0791|consen 338 -QTEDQYVFLH 347 (374)
T ss_pred -chHHHHHHHH
Confidence 1234454444
No 75
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.49 E-value=0.0068 Score=49.17 Aligned_cols=55 Identities=27% Similarity=0.442 Sum_probs=41.9
Q ss_pred cceeeee---CCCCceEEEEeecCC--CCcc--cccccccCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 259 AVTFVWN---GQEGEDVLLVGDFTG--NWKD--PIKATHKGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 259 ~v~f~w~---~~~~~~V~l~GsF~~--~W~~--~~~m~~~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
+|+|.-. -..++.|+|+|+-.. +|+. .++|.......|++++.||.| ..+|||++
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 4566622 245789999997654 8986 667765555789999999998 69999988
No 76
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.38 E-value=0.015 Score=58.95 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=39.0
Q ss_pred HHHHHHHHHH---HH-hCCCeEEEEcCCCCChhHHHHHHHHHHH---c---CCCHHHHHHHHhhccC
Q 016234 172 LPFCVGLLLR---LL-KKNHRVFVTCTTGLNRSPASVIAYLHWM---T---DTSLHAAYNFVNGLHL 228 (393)
Q Consensus 172 l~~av~fI~~---~l-~~g~~VLVHC~aGisRS~tlv~aYLm~~---~---g~sl~eA~~~vr~~R~ 228 (393)
...++.++.. .. ...+++.|||.+|+|||+++++.-.+.. . .....+.+..+|..|+
T Consensus 281 ~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~ 347 (415)
T KOG0789|consen 281 VKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRP 347 (415)
T ss_pred hHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Confidence 4555666642 22 2357999999999999999997653322 2 2347788888888875
No 77
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.04 E-value=0.023 Score=60.01 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=74.2
Q ss_pred cCCCCceeeeCC-----eEEcCCcCCcccH----HHHHhCCCceEEecCCCCCcc------ccCCC--------------
Q 016234 90 SLGMRYSKITEQ-----IYVGSCIQKEADV----ETLSKAGITAVLNFQSGTEAE------NWGID-------------- 140 (393)
Q Consensus 90 ~~~~~~~~I~p~-----LylGs~~~~a~d~----~~L~~~GIt~Vvnl~~~~~~~------~~~~~-------------- 140 (393)
..-+|.+.|.++ .||..+-+....+ +...+.|+..||+|+.-.+.- +|.-.
T Consensus 787 ~dYiNAS~I~DhDPR~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeGselyhiyEV~LVS 866 (1004)
T KOG0793|consen 787 SDYINASPIMDHDPRNPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEGSELYHIYEVNLVS 866 (1004)
T ss_pred cccccccccccCCCCccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCCcceeeeEEeeeeh
Confidence 355677778753 7776654344444 345677999999999765432 23100
Q ss_pred ------hhhhhhHhhh-------CCe-EEEEEeccCCCCccccccHHHHHHHHHH---HHh-CCCeEEEEcCCCCChhHH
Q 016234 141 ------YKSINESCQK-------FNL-LMINYPIRDSDSFDMRKKLPFCVGLLLR---LLK-KNHRVFVTCTTGLNRSPA 202 (393)
Q Consensus 141 ------~~~~~~~~~~-------~gi-~y~~ipi~D~~~~~l~~~l~~av~fI~~---~l~-~g~~VLVHC~aGisRS~t 202 (393)
..-.+.+|-+ .-+ +++.+...+...+.-. ...++|-.+ +.+ +..+|+|||..|-|||++
T Consensus 867 EHIWceDfLVRSFYLKNlqtseTRTvTQFHfLSWp~egvPasa---rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~ 943 (1004)
T KOG0793|consen 867 EHIWCEDFLVRSFYLKNLQTSETRTVTQFHFLSWPDEGVPASA---RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGT 943 (1004)
T ss_pred hhhhhhhHHHHHHHHhhcccccceeeeeeeeecccccCCccch---HHHHHHHHHhhhhccCCCCceEEEccCCCCccce
Confidence 0001111110 111 2233334443333322 234444333 322 246899999999999998
Q ss_pred HHHHHHHHHc------CCCHHHHHHHHhhccC
Q 016234 203 SVIAYLHWMT------DTSLHAAYNFVNGLHL 228 (393)
Q Consensus 203 lv~aYLm~~~------g~sl~eA~~~vr~~R~ 228 (393)
-++.=|.... .++....++++|..|+
T Consensus 944 YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~ 975 (1004)
T KOG0793|consen 944 YILIDMVLNRMAKGAKEIDIAATLEHLRDQRP 975 (1004)
T ss_pred eeeHHHHHHHHhccchhhhHHHHHHHHhhcCC
Confidence 6655443321 3567777888888875
No 78
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.99 E-value=0.023 Score=49.27 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=43.4
Q ss_pred ccCCCCccccccHHHHHHHHHHHHhC---CCeEEEEcCCCCC----hhHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 016234 160 IRDSDSFDMRKKLPFCVGLLLRLLKK---NHRVFVTCTTGLN----RSPASVIAYLHWMTDTSLHAAYNFVNGL 226 (393)
Q Consensus 160 i~D~~~~~l~~~l~~av~fI~~~l~~---g~~VLVHC~aGis----RS~tlv~aYLm~~~g~sl~eA~~~vr~~ 226 (393)
..|+.+.++. ++...+..+++.+++ .++.+|||++.-. -++.++.+|+|.++|||+++|++-+.+.
T Consensus 38 ~~DFGPlnL~-~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~ 110 (141)
T PF14671_consen 38 YADFGPLNLA-QLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASI 110 (141)
T ss_dssp SS------HH-HHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTT
T ss_pred cCcCCCccHH-HHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Confidence 3688888885 477777778888876 5788899987643 3577899999999999999999999865
No 79
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.93 E-value=0.045 Score=44.48 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=37.5
Q ss_pred eeCCCCceEEEEeecCC--CCcc--ccccccc---CCCcEEEEEEcCCc-eEEEEEEE
Q 016234 264 WNGQEGEDVLLVGDFTG--NWKD--PIKATHK---GGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 264 w~~~~~~~V~l~GsF~~--~W~~--~~~m~~~---~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
+.-.-++++.|+|+-.. +|+. .++|... ++..|++++.+|++ .++|||+|
T Consensus 8 ~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 8 YYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 33456789999997643 7875 6777432 33479999999987 59999999
No 80
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=95.85 E-value=0.036 Score=45.16 Aligned_cols=56 Identities=30% Similarity=0.502 Sum_probs=40.9
Q ss_pred ccceeeee---CCCCceEEEEeecCC--CCcc--ccccc-c---cCCCcEEEEEEcCCc-eEEEEEEE
Q 016234 258 HAVTFVWN---GQEGEDVLLVGDFTG--NWKD--PIKAT-H---KGGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 258 ~~v~f~w~---~~~~~~V~l~GsF~~--~W~~--~~~m~-~---~~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
.+|+|... -..+++|+|+|+-.. +|+. .+.|. . ...+.|+++++||.| .++|||++
T Consensus 3 v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 3 VSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred EEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 46777764 245789999997543 8986 33332 1 234689999999998 69999999
No 81
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.80 E-value=0.015 Score=63.74 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=44.6
Q ss_pred cceeeeeCCCCceEEEEeecCCCCccccccccc-CCCcEEEEEEcCCceEEEEEEE--cCe--eecCC
Q 016234 259 AVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHK-GGSRYEVEIRLTQGKYYYKYIV--NGQ--WRHST 321 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~-~~g~~~~~~~L~~G~y~YkF~V--DG~--w~~d~ 321 (393)
-++|..-+|+|++|.|+|+|| + ....+|.+. +.|.|++.|++..|.. |||.| ||+ ...||
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn-~-~~~~~m~~~~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DP 93 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGG-G-RKLAELERLHPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDP 93 (726)
T ss_pred cEEEEEECCCCeEEEEEeecC-C-CccccceEcCCCceEEEEecCCCCCC-eEEEEEeCCceeEeccc
Confidence 567877779999999999999 6 345678764 5699999999777732 55555 785 44555
No 82
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.17 E-value=0.044 Score=58.79 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=47.8
Q ss_pred cceeeeeCCCCceEEEEeecCCCCcc-----cccccccCCCcEEEEEE-cCCceEEEEEEE--cCe--eecCCCCC
Q 016234 259 AVTFVWNGQEGEDVLLVGDFTGNWKD-----PIKATHKGGSRYEVEIR-LTQGKYYYKYIV--NGQ--WRHSTISP 324 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~GsF~~~W~~-----~~~m~~~~~g~~~~~~~-L~~G~y~YkF~V--DG~--w~~d~~~p 324 (393)
.++|..-+|.|++|.|.+ |+ +|+. .++|.+..+|+|++.++ +..|. .|+|.| +|. ++.||-..
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~-~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~~~DPya~ 92 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YK-SGEDGEPYKVVKMKRGENGVWSAVLEGDLHGY-FYTYQVCINGKWRETVDPYAK 92 (605)
T ss_pred eeEEEEECCCCCEEEEEE-Ec-CCCCCccceEEecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEEEcCCCcc
Confidence 578987779999999998 88 7853 56888888899999997 55663 355555 554 58888654
No 83
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.14 E-value=0.079 Score=42.09 Aligned_cols=61 Identities=21% Similarity=0.564 Sum_probs=38.4
Q ss_pred cceeeee----C-CCCceEEEEeecCCCCcc--cccccccC----CCcEEEEEEcCCceEEEEEEE-cC--eeecC
Q 016234 259 AVTFVWN----G-QEGEDVLLVGDFTGNWKD--PIKATHKG----GSRYEVEIRLTQGKYYYKYIV-NG--QWRHS 320 (393)
Q Consensus 259 ~v~f~w~----~-~~~~~V~l~GsF~~~W~~--~~~m~~~~----~g~~~~~~~L~~G~y~YkF~V-DG--~w~~d 320 (393)
+||+.|. + .++.+|.+.+.|+ +|.. ..+|.+.. ++.|+++|.+|..-|...|+. || .|-.+
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n-~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDNN 77 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFN-RWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDNN 77 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS--B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EEST
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCC-CCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeCC
Confidence 5777774 1 2488999999999 8986 45676555 789999999999877777777 44 57443
No 84
>PRK03705 glycogen debranching enzyme; Provisional
Probab=94.97 E-value=0.046 Score=59.09 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=45.4
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCc--ccccccccCCCcEEEEEE-cCCceEEEEEEEcCee
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWK--DPIKATHKGGSRYEVEIR-LTQGKYYYKYIVNGQW 317 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~--~~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG~w 317 (393)
..++|+.-++.|++|.|.. |+ ++. ..++|.++.+|+|++.|+ +.+|. .|+|.|+|.|
T Consensus 19 ~g~~F~vwAP~A~~V~L~l-~~-~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 19 QGVNFTLFSAHAERVELCV-FD-ENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CCEEEEEECCCCCEEEEEE-Ec-CCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 3588987779999999998 88 553 267888778899999997 66665 5999999853
No 85
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.80 E-value=0.023 Score=63.02 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEcCCCCChhHHHHHHHHHHHc--CCCHHHHHHHHhhccCCCCC
Q 016234 172 LPFCVGLLLRLLKK----NHRVFVTCTTGLNRSPASVIAYLHWMT--DTSLHAAYNFVNGLHLCRPD 232 (393)
Q Consensus 172 l~~av~fI~~~l~~----g~~VLVHC~aGisRS~tlv~aYLm~~~--g~sl~eA~~~vr~~R~~~Pn 232 (393)
--..+.|+++...- .|+++|||.+|+||||+.++.=-|..+ .-..-+.+.+|+..|..+++
T Consensus 712 ~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 712 PTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred chHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 34567777776643 389999999999999997654433322 22334455666655555554
No 86
>PLN02960 alpha-amylase
Probab=94.73 E-value=0.037 Score=60.90 Aligned_cols=59 Identities=27% Similarity=0.467 Sum_probs=43.4
Q ss_pred CCCccceeeeeCCCCceEEEEeecCCCCcc-ccc-----ccccCCCcEEEEEE--cCCc----e---EEEEEEEc
Q 016234 255 PPTHAVTFVWNGQEGEDVLLVGDFTGNWKD-PIK-----ATHKGGSRYEVEIR--LTQG----K---YYYKYIVN 314 (393)
Q Consensus 255 ~~~~~v~f~w~~~~~~~V~l~GsF~~~W~~-~~~-----m~~~~~g~~~~~~~--L~~G----~---y~YkF~VD 314 (393)
.+.|-|+|.--+++|..++|+|+|| ||++ ... |.+++=|+|.+.++ |..| . -+|.|+.|
T Consensus 125 ~~~~~~~~~~wap~a~~~~~~gdfn-~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 125 HPEHRVDFMEWAPGARYCSLVGDFN-NWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CcccCeEEEEEcCCceeEEEeeccc-CCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 3445677765559999999999999 9997 333 33556689999997 7776 2 35777776
No 87
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=94.32 E-value=0.16 Score=51.95 Aligned_cols=89 Identities=17% Similarity=0.345 Sum_probs=60.0
Q ss_pred CCCCccceeeeeCCCCc-------eEEEE--eecCC-CCcccccccccC-CCcEEEEEEcCCc-eEEEEEEEc---C---
Q 016234 254 GPPTHAVTFVWNGQEGE-------DVLLV--GDFTG-NWKDPIKATHKG-GSRYEVEIRLTQG-KYYYKYIVN---G--- 315 (393)
Q Consensus 254 g~~~~~v~f~w~~~~~~-------~V~l~--GsF~~-~W~~~~~m~~~~-~g~~~~~~~L~~G-~y~YkF~VD---G--- 315 (393)
+.....|||-|.++.++ .|+|. |..|. .+..+..|.+-. .++|..++.||.. .-.|+|+++ .
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~ 114 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFS 114 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEecccccccc
Confidence 34557999999975554 48874 32221 133344676554 3699999999998 789999993 1
Q ss_pred ---------e------e-------ecCCCCCee-eCCCCCcceEEEeCCC
Q 016234 316 ---------Q------W-------RHSTISPTE-RDDKGNVNNIIIVGDT 342 (393)
Q Consensus 316 ---------~------w-------~~d~~~p~~-~d~~G~~nnvi~v~~~ 342 (393)
. | ..||.||.. .++.|+..|+|.+++.
T Consensus 115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a 164 (411)
T PRK10439 115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQA 164 (411)
T ss_pred ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCC
Confidence 0 2 478888843 4555666799998864
No 88
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=94.03 E-value=0.38 Score=40.09 Aligned_cols=48 Identities=17% Similarity=0.466 Sum_probs=36.4
Q ss_pred CCCceEEEEeecCC--CCcc--ccccccc-------CCCcEEEEEEcCCc----eEEEEEEEc
Q 016234 267 QEGEDVLLVGDFTG--NWKD--PIKATHK-------GGSRYEVEIRLTQG----KYYYKYIVN 314 (393)
Q Consensus 267 ~~~~~V~l~GsF~~--~W~~--~~~m~~~-------~~g~~~~~~~L~~G----~y~YkF~VD 314 (393)
+.+++|+|+|+=.. +|+. .++|... ....|+++++||++ .++|||+..
T Consensus 13 ~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~ 75 (112)
T cd05806 13 DRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKR 75 (112)
T ss_pred CCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEe
Confidence 56789999996432 8986 5667643 33469999999986 699999983
No 89
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=93.43 E-value=0.65 Score=39.28 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=52.4
Q ss_pred ccceeeeeC---CCCceEEEEeecCCCCcc-----cccccccCC-CcEEEEEEcCCc-eEEEEEEEcCe-----------
Q 016234 258 HAVTFVWNG---QEGEDVLLVGDFTGNWKD-----PIKATHKGG-SRYEVEIRLTQG-KYYYKYIVNGQ----------- 316 (393)
Q Consensus 258 ~~v~f~w~~---~~~~~V~l~GsF~~~W~~-----~~~m~~~~~-g~~~~~~~L~~G-~y~YkF~VDG~----------- 316 (393)
..|||.|.. .....+.|-|+.| +... ...|.+-.+ ++|..++.||.+ .-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~n-gvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDIN-GVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEET-TTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECC-cccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 469999992 3456789999999 7753 345665443 699999999998 78899997532
Q ss_pred -----eecCCCCCee-eCC---CCCcceEEEeCC
Q 016234 317 -----WRHSTISPTE-RDD---KGNVNNIIIVGD 341 (393)
Q Consensus 317 -----w~~d~~~p~~-~d~---~G~~nnvi~v~~ 341 (393)
=..||-||.. ... .|+.-|++..++
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~ 114 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPD 114 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence 3578888833 443 478999998876
No 90
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.36 E-value=0.16 Score=55.43 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=45.1
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc----cccccccCCCcEEEEEE-cCCceEEEEEEEcCee
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD----PIKATHKGGSRYEVEIR-LTQGKYYYKYIVNGQW 317 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~----~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG~w 317 (393)
..++|..-++.|+.|.|. -|+ ++.. .++|.++.+|+|++.|. +.+|. .|+|+|+|.|
T Consensus 14 ~g~~F~vwap~A~~V~L~-l~~-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 14 QGVNFALFSANAEKVELC-LFD-AQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred CcEEEEEECCCCCEEEEE-EEc-CCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 357898887999999997 477 5552 46788888899999997 67776 5999999853
No 91
>PLN02950 4-alpha-glucanotransferase
Probab=93.15 E-value=0.46 Score=53.32 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=44.6
Q ss_pred CCCCccceeeee--CCCCceEEEEeecCC--CCcc--ccccccc---CCCcEEEEEEcCCc-eEEEEEEE
Q 016234 254 GPPTHAVTFVWN--GQEGEDVLLVGDFTG--NWKD--PIKATHK---GGSRYEVEIRLTQG-KYYYKYIV 313 (393)
Q Consensus 254 g~~~~~v~f~w~--~~~~~~V~l~GsF~~--~W~~--~~~m~~~---~~g~~~~~~~L~~G-~y~YkF~V 313 (393)
.++...|+|.-+ ..-+++|.|+|+-.. +|+. .++|... ++..|++++.||.| ..+|||++
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 345567777766 335889999998754 7885 6778433 34589999999987 69999995
No 92
>PLN02950 4-alpha-glucanotransferase
Probab=92.78 E-value=0.55 Score=52.68 Aligned_cols=70 Identities=24% Similarity=0.415 Sum_probs=51.8
Q ss_pred CCCccceeeeeC---CCCceEEEEeecCC--CCcc--cccccccCCCcEEEEEEcCCc--eEEEEEEE---cCe--eecC
Q 016234 255 PPTHAVTFVWNG---QEGEDVLLVGDFTG--NWKD--PIKATHKGGSRYEVEIRLTQG--KYYYKYIV---NGQ--WRHS 320 (393)
Q Consensus 255 ~~~~~v~f~w~~---~~~~~V~l~GsF~~--~W~~--~~~m~~~~~g~~~~~~~L~~G--~y~YkF~V---DG~--w~~d 320 (393)
+....|+|.... ..+++|+|+|+=.. +|+. .++|.......|++++.+|.+ ..+|||++ +|. |-..
T Consensus 150 ~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~g 229 (909)
T PLN02950 150 PDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLELG 229 (909)
T ss_pred CCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEeeC
Confidence 445678888763 35889999996543 8986 666775667899999999988 59999999 343 7655
Q ss_pred CCCC
Q 016234 321 TISP 324 (393)
Q Consensus 321 ~~~p 324 (393)
++.-
T Consensus 230 ~NR~ 233 (909)
T PLN02950 230 VNRE 233 (909)
T ss_pred CCce
Confidence 5443
No 93
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=92.68 E-value=0.24 Score=56.45 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=49.3
Q ss_pred cceeeeeCCCCceEEEEe-ecCCCCcc---cccccccCCCcEEEEEE-cCCc-----eEEEEEEEcC----eeecCCCCC
Q 016234 259 AVTFVWNGQEGEDVLLVG-DFTGNWKD---PIKATHKGGSRYEVEIR-LTQG-----KYYYKYIVNG----QWRHSTISP 324 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~G-sF~~~W~~---~~~m~~~~~g~~~~~~~-L~~G-----~y~YkF~VDG----~w~~d~~~p 324 (393)
.++|+.-++.|++|.|.+ +++ +|.+ .++|.+..+|+|++.++ +.+| -+.|+|.|++ +.+.||-..
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~-~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKD-DQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCC-CCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 378887779999999998 444 5654 57898888999999997 4443 3688888976 467787443
No 94
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.45 E-value=0.21 Score=55.84 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=38.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHc--CCCHHHHHHHHhhccCCCCCccchhHHHHHHHH
Q 016234 186 NHRVFVTCTTGLNRSPASVIAYLHWMT--DTSLHAAYNFVNGLHLCRPDRPAVAWATRDLIA 245 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~aYLm~~~--g~sl~eA~~~vr~~R~~~Pn~~fl~~~~~~ll~ 245 (393)
.+++.|||..|.|||++.+++-++..+ --..-|.+..||..|..+|+.-- ...|+.++.
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~-t~~QY~fcY 1078 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVD-TSDQYQFCY 1078 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccC-cHHHHHHHH
Confidence 589999999999999998877666542 11233445555555555565432 255666665
No 95
>PLN02316 synthase/transferase
Probab=92.22 E-value=0.99 Score=51.17 Aligned_cols=76 Identities=20% Similarity=0.485 Sum_probs=52.7
Q ss_pred CCccceeeee---C--CCCceEEEEeecCCCCcc---ccccccc--CCCcEEEEEEcCCceEEEEEEE-cCeeecCCCCC
Q 016234 256 PTHAVTFVWN---G--QEGEDVLLVGDFTGNWKD---PIKATHK--GGSRYEVEIRLTQGKYYYKYIV-NGQWRHSTISP 324 (393)
Q Consensus 256 ~~~~v~f~w~---~--~~~~~V~l~GsF~~~W~~---~~~m~~~--~~g~~~~~~~L~~G~y~YkF~V-DG~w~~d~~~p 324 (393)
+..+|++.|+ + .+..+|.|.|-|| +|.- ...|.|. .++.|.++|.+|+.-|.--|+. ||.
T Consensus 152 a~~~~~v~~n~~~~~L~~~~~v~i~~gfN-~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~-------- 222 (1036)
T PLN02316 152 PDSDIEVYLNRSLSTLANEPDVLIMGAFN-GWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQ-------- 222 (1036)
T ss_pred CCCeeEEEEcCCCCccCCCCceEEEeccc-cccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCc--------
Confidence 4456777777 1 2467899999999 9985 3456554 4678999999999999999998 663
Q ss_pred eeeCCCCCcceEEEeC
Q 016234 325 TERDDKGNVNNIIIVG 340 (393)
Q Consensus 325 ~~~d~~G~~nnvi~v~ 340 (393)
.++|.++..+=.+.|+
T Consensus 223 ~~yDNN~~~Df~~~V~ 238 (1036)
T PLN02316 223 NVYDNNDHKDFCVEIE 238 (1036)
T ss_pred cccccCCCCceEEEeC
Confidence 2444444444445554
No 96
>PLN02316 synthase/transferase
Probab=91.13 E-value=0.6 Score=52.86 Aligned_cols=82 Identities=20% Similarity=0.435 Sum_probs=55.3
Q ss_pred CCCccceeeee---C--CCCceEEEEeecCCCCcccc----cc---cccCCCcEEEEEEcCCceEEEEEEE-cCeeecCC
Q 016234 255 PPTHAVTFVWN---G--QEGEDVLLVGDFTGNWKDPI----KA---THKGGSRYEVEIRLTQGKYYYKYIV-NGQWRHST 321 (393)
Q Consensus 255 ~~~~~v~f~w~---~--~~~~~V~l~GsF~~~W~~~~----~m---~~~~~g~~~~~~~L~~G~y~YkF~V-DG~w~~d~ 321 (393)
..-.+|++.|+ + .+..+|.|.|.|| +|.... .| ...+++.|.++|.+|..-|..-|+. ||. |
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~----~ 400 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-NWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP----P 400 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEc-CCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC----c
Confidence 44567888888 1 2478999999999 998521 22 2235678999999999999888887 553 3
Q ss_pred CCCeeeCCCCCcceEEEeCC
Q 016234 322 ISPTERDDKGNVNNIIIVGD 341 (393)
Q Consensus 322 ~~p~~~d~~G~~nnvi~v~~ 341 (393)
......|.+++.+=-+.|..
T Consensus 401 ~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 401 GNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred ccccccccCCCcceeeecCC
Confidence 33445555554444444543
No 97
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=90.95 E-value=0.5 Score=52.80 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=46.8
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCc--cccccccc-CCCcEEEEEE-cCCceEEEEEEEc------Ce----eecCCCC
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWK--DPIKATHK-GGSRYEVEIR-LTQGKYYYKYIVN------GQ----WRHSTIS 323 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~--~~~~m~~~-~~g~~~~~~~-L~~G~y~YkF~VD------G~----w~~d~~~ 323 (393)
..++|+..+|.|++|.|.+..+ +|. ..++|.++ .+|+|++.++ ...|. .|+|.|+ |+ .+.||-.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~-~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA 212 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSA-SKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYS 212 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcC-CCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCc
Confidence 4688988779999999997555 553 25788876 5799999997 44554 3666665 53 3778754
Q ss_pred C
Q 016234 324 P 324 (393)
Q Consensus 324 p 324 (393)
.
T Consensus 213 ~ 213 (898)
T TIGR02103 213 V 213 (898)
T ss_pred c
Confidence 4
No 98
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=0.33 Score=50.85 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHH
Q 016234 172 LPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLH 209 (393)
Q Consensus 172 l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm 209 (393)
|..|+...++.-..+..|||||.-|-.||+-++..-++
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHH
Confidence 44555555555556789999999999999987765443
No 99
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=90.41 E-value=1.2 Score=35.59 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=19.7
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
.++.+|+|+|..| .||. .++.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~-~a~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCE-KASAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHH-HHHHHH-HHhCCc
Confidence 4678999999999 5884 344444 455653
No 100
>PLN02160 thiosulfate sulfurtransferase
Probab=90.22 E-value=1 Score=38.69 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=42.7
Q ss_pred ccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCc-cccccHHHHHHHHHHHHhCCCeEE
Q 016234 112 ADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSF-DMRKKLPFCVGLLLRLLKKNHRVF 190 (393)
Q Consensus 112 ~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~-~l~~~l~~av~fI~~~l~~g~~VL 190 (393)
.++..+.+.+ ..||+++...+...-.+ .|-..+++|..+.... .+.. .+....+...+..+.+|+
T Consensus 20 ~e~~~~~~~~-~~lIDVR~~~E~~~ghI-----------pgA~~iniP~~~~~~~~~l~~--~~~~~~~~~~~~~~~~Ii 85 (136)
T PLN02160 20 SQAKTLLQSG-HQYLDVRTQDEFRRGHC-----------EAAKIVNIPYMLNTPQGRVKN--QEFLEQVSSLLNPADDIL 85 (136)
T ss_pred HHHHHHHhCC-CEEEECCCHHHHhcCCC-----------CCcceecccchhcCcccccCC--HHHHHHHHhccCCCCcEE
Confidence 4454444455 36899998765321000 1212356666432211 1110 111122223345678999
Q ss_pred EEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 191 VTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 191 VHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
|||..| .||. .++ .++...|++
T Consensus 86 vyC~sG-~RS~-~Aa-~~L~~~G~~ 107 (136)
T PLN02160 86 VGCQSG-ARSL-KAT-TELVAAGYK 107 (136)
T ss_pred EECCCc-HHHH-HHH-HHHHHcCCC
Confidence 999999 5884 333 333455653
No 101
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=90.11 E-value=1.7 Score=36.47 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEec
Q 016234 114 VETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPI 160 (393)
Q Consensus 114 ~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi 160 (393)
++.|++.||+.||+++.-+.....++.-+.+.......||.|+++|-
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~ 52 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPE 52 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechh
Confidence 45789999999999887765445567777788888899999999986
No 102
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=88.89 E-value=1.5 Score=47.25 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=33.7
Q ss_pred ceeeeeCCCCceEEEEeecCCCCcc-ccccc-ccCCCcEEEEEE
Q 016234 260 VTFVWNGQEGEDVLLVGDFTGNWKD-PIKAT-HKGGSRYEVEIR 301 (393)
Q Consensus 260 v~f~w~~~~~~~V~l~GsF~~~W~~-~~~m~-~~~~g~~~~~~~ 301 (393)
|+|+-.++.++.|.++|+|| +|+. ...+. |.+.|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n-~W~~~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFN-NWNPSSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccC-CCCCcccccCcccccceeEEecC
Confidence 88886679999999999999 9998 44444 566789998876
No 103
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=88.64 E-value=0.79 Score=53.18 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=47.0
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCcc----cccccccCCCcEEEEEE-cCCceEEEEEEEcCee
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKD----PIKATHKGGSRYEVEIR-LTQGKYYYKYIVNGQW 317 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~----~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VDG~w 317 (393)
..|+|..-.+.|++|.|+ -|+ +|.. .++|..+.+++|++.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~-~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFD-LWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEE-CCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 468998887899999998 798 7864 46777678899999987 78887 6999999855
No 104
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=87.44 E-value=1.8 Score=34.70 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=43.7
Q ss_pred HHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeE-EEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEc
Q 016234 115 ETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLL-MINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTC 193 (393)
Q Consensus 115 ~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~-y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC 193 (393)
..+...+-..||+++...+.... +-.. ..++|+.+........ . +.++++|+|+|
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~-------------~i~~~~~~ip~~~~~~~~~~~---------~--~~~~~~ivv~C 68 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERG-------------HIPGAAINIPLSELKAAENLL---------E--LPDDDPIVVYC 68 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhc-------------CCCcceeeeecccchhhhccc---------c--cCCCCeEEEEe
Confidence 33445566789999988543221 2223 6778877654321111 0 56688999999
Q ss_pred CCCCChhHHHHHHHHHHH
Q 016234 194 TTGLNRSPASVIAYLHWM 211 (393)
Q Consensus 194 ~aGisRS~tlv~aYLm~~ 211 (393)
..|. || ..++.+|...
T Consensus 69 ~~G~-rS-~~aa~~L~~~ 84 (110)
T COG0607 69 ASGV-RS-AAAAAALKLA 84 (110)
T ss_pred CCCC-Ch-HHHHHHHHHc
Confidence 9995 88 6666666544
No 105
>PRK01415 hypothetical protein; Validated
Probab=86.94 E-value=1.3 Score=42.15 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=20.4
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
.++++|+++|++|+ || ..++++|.. +|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLKS-IGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHHH-cCC
Confidence 46789999999995 88 566666643 454
No 106
>PLN03244 alpha-amylase; Provisional
Probab=83.32 E-value=1.1 Score=48.98 Aligned_cols=57 Identities=23% Similarity=0.522 Sum_probs=40.8
Q ss_pred CCcccee-eeeCCCCceEEEEeecCCCCccccc------ccccCCCcEEEEEE--cCCc----eE---EEEEEEc
Q 016234 256 PTHAVTF-VWNGQEGEDVLLVGDFTGNWKDPIK------ATHKGGSRYEVEIR--LTQG----KY---YYKYIVN 314 (393)
Q Consensus 256 ~~~~v~f-~w~~~~~~~V~l~GsF~~~W~~~~~------m~~~~~g~~~~~~~--L~~G----~y---~YkF~VD 314 (393)
+.|.++| .|. ++|.-.+|+|+|| ||++.-. |.+++=|+|.+.++ |..| .| +|.|+-|
T Consensus 129 ~~~~~~~~ewa-pga~~~~~~gdfn-~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 129 MEHRVDFMDWA-PGARYCAIIGDFN-GWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred cccCceeEeec-CCcceeeeecccc-CCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 3445555 466 9999999999999 9997322 45556689999987 7766 33 5666654
No 107
>PLN02877 alpha-amylase/limit dextrinase
Probab=81.00 E-value=3.2 Score=46.79 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=38.5
Q ss_pred cceeeeeCCCCceEEEEeecCCCCcc-----cccccccCCCcEEEEEE-cCCceEEEEEEEc
Q 016234 259 AVTFVWNGQEGEDVLLVGDFTGNWKD-----PIKATHKGGSRYEVEIR-LTQGKYYYKYIVN 314 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~GsF~~~W~~-----~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VD 314 (393)
.++|...+|.|++|.|.- |+ +|.. .++|. ..+|+|++.++ ...| +.|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd-~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YD-DPRGKEPLEIVQLK-ESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ec-CCCCccceEEeccc-CCCCEEEEEeccCCCC-CeeEEEEe
Confidence 688987779999999996 77 6632 34576 67899999997 3345 44777775
No 108
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=80.32 E-value=2.9 Score=41.97 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=17.3
Q ss_pred hCCCeEEEEcCCCCChhHHHHHH
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIA 206 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~a 206 (393)
.+|..|||||..|-+||+-++..
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL 251 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSL 251 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHH
Confidence 56889999999999999665544
No 109
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=73.81 E-value=13 Score=31.24 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=20.3
Q ss_pred HhCCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 183 LKKNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 183 l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
+.++.+|+|+|..|-.||. .+++++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~--~a~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQ--SLAWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHH--HHHHHHHHcCC
Confidence 4567899999974335764 33377777776
No 110
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=73.75 E-value=13 Score=30.17 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=37.1
Q ss_pred ccceeeee--CCCCceEEEEeecCCC--Ccc-cccccccCC----CcEEEEEEcCCceEEEEEEE
Q 016234 258 HAVTFVWN--GQEGEDVLLVGDFTGN--WKD-PIKATHKGG----SRYEVEIRLTQGKYYYKYIV 313 (393)
Q Consensus 258 ~~v~f~w~--~~~~~~V~l~GsF~~~--W~~-~~~m~~~~~----g~~~~~~~L~~G~y~YkF~V 313 (393)
..|+|+.. ....++|.|.-.=+ . +.. .++|.+... ..|++++.++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~-~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDP-YDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECC-CCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 45666665 23478888865322 2 222 577865532 35999999888999999999
No 111
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=73.22 E-value=21 Score=29.18 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=19.8
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
..+.+|+|+|..| +++++.++. ++...|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 3478999999997 556455544 44555654
No 112
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=73.00 E-value=5.3 Score=39.40 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
++++|+|||.+|+ || ..++++|.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs-~~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RC-EKASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HH-HHHHHHHHH-cCC
Confidence 5689999999995 88 556666654 454
No 113
>PRK05320 rhodanese superfamily protein; Provisional
Probab=72.87 E-value=6.9 Score=37.44 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
++++|+++|+.|+ || ..++.+|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs-~~Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RC-EKAAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HH-HHHHHHHHH-cCC
Confidence 5789999999995 88 666666653 354
No 114
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=72.46 E-value=4.8 Score=42.51 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=23.1
Q ss_pred HHHHHHHHHHh-CCCeEEEEcCCCCChhHHHH
Q 016234 174 FCVGLLLRLLK-KNHRVFVTCTTGLNRSPASV 204 (393)
Q Consensus 174 ~av~fI~~~l~-~g~~VLVHC~aGisRS~tlv 204 (393)
++..+|.+++. +|..|||||.-|.+||.-++
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~ 362 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVS 362 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHH
Confidence 44455666666 56899999999999995443
No 115
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=64.19 E-value=30 Score=33.78 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=44.6
Q ss_pred eeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHH
Q 016234 98 ITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVG 177 (393)
Q Consensus 98 I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~ 177 (393)
|.|.-.+|.+. .+.+...+-.-.=+.||+.+..-|.. |-+. .+.-.+++ ..|.+.-.
T Consensus 105 v~p~~~vG~yl-~p~~wn~~l~D~~~vviDtRN~YE~~-----------------iG~F----~gAv~p~~-~tFrefP~ 161 (308)
T COG1054 105 VDPLENVGTYL-SPKDWNELLSDPDVVVIDTRNDYEVA-----------------IGHF----EGAVEPDI-ETFREFPA 161 (308)
T ss_pred cCccccccCcc-CHHHHHHHhcCCCeEEEEcCcceeEe-----------------eeee----cCccCCCh-hhhhhhHH
Confidence 55655666666 66666544333336677777665421 1111 11111222 22444444
Q ss_pred HHHHHHh--CCCeEEEEcCCCCChhHHHHHHHH
Q 016234 178 LLLRLLK--KNHRVFVTCTTGLNRSPASVIAYL 208 (393)
Q Consensus 178 fI~~~l~--~g~~VLVHC~aGisRS~tlv~aYL 208 (393)
++.+.++ ++++|...|++|| |. =-+.+||
T Consensus 162 ~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m 192 (308)
T COG1054 162 WVEENLDLLKDKKVVMYCTGGI-RC-EKASAWM 192 (308)
T ss_pred HHHHHHHhccCCcEEEEcCCce-ee-hhhHHHH
Confidence 4444443 4789999999999 76 3333443
No 116
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=63.12 E-value=17 Score=29.33 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
++.+|+|||..|. || ..++ .++...|.
T Consensus 65 ~~~~ivv~C~~G~-rs-~~a~-~~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RS-IIGA-QSLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hH-HHHH-HHHHHCCC
Confidence 3578999999996 77 3343 34455565
No 117
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=62.70 E-value=39 Score=27.73 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=18.5
Q ss_pred HhCCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 183 LKKNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 183 l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
...+.+|+|+|..|. ||... +.. +...|.
T Consensus 61 ~~~~~~ivv~C~~G~-rs~~a-a~~-L~~~G~ 89 (117)
T cd01522 61 VGKDRPVLLLCRSGN-RSIAA-AEA-AAQAGF 89 (117)
T ss_pred CCCCCeEEEEcCCCc-cHHHH-HHH-HHHCCC
Confidence 346789999999994 77433 333 344454
No 118
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=62.09 E-value=29 Score=27.39 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=40.3
Q ss_pred hCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHH----HHHHHHHhCCCeEEEEcC
Q 016234 119 KAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCV----GLLLRLLKKNHRVFVTCT 194 (393)
Q Consensus 119 ~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av----~fI~~~l~~g~~VLVHC~ 194 (393)
..+=..||+++...+.. ..+=-.-+++|........ ...+.... ......+.++..|+++|.
T Consensus 10 ~~~~~~liD~R~~~~~~-------------~~hI~ga~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~ 75 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEYE-------------RGHIPGAVNIPFPSLDPDE-PSLSEDKLDEFLKELGKKIDKDKDIVFYCS 75 (113)
T ss_dssp TTTTEEEEEESSHHHHH-------------HSBETTEEEEEGGGGSSSS-SBCHHHHHHHHHHHHTHGSTTTSEEEEEES
T ss_pred hCCCeEEEEeCCHHHHH-------------cCCCCCCcccccccccccc-ccccccccccccccccccccccccceeeee
Confidence 44556788988654311 1111123677775431111 11223322 222222345678999997
Q ss_pred CCCChhHHHHHH---HHHHHcCCC
Q 016234 195 TGLNRSPASVIA---YLHWMTDTS 215 (393)
Q Consensus 195 aGisRS~tlv~a---YLm~~~g~s 215 (393)
.|. |+...+.+ +++...|++
T Consensus 76 ~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 76 SGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp SSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccc-ccchhHHHHHHHHHHHcCCC
Confidence 775 55554444 334444543
No 119
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=61.85 E-value=20 Score=30.66 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCCccceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEE
Q 016234 255 PPTHAVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYK 310 (393)
Q Consensus 255 ~~~~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~Yk 310 (393)
.+--.|+|+|.+..+..|...++-. -|.. -.+.-..+-.|+.+++- +|.|.|+
T Consensus 59 ~pGDTVtw~~~d~~~Hnv~~~~~~~-~~g~-~~~~~~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 59 KPGDTVTWVNTDSVGHNVTAVGGMD-PEGS-GTLKAGINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCCCEEEEEECCCCCceEEEeCCCC-cccc-cccccCCCcceEEEecc-cceEEEE
Confidence 3445889999965589999998764 2332 23322234467777774 9999997
No 120
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=60.25 E-value=21 Score=29.66 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=35.6
Q ss_pred cceeeee--CCCCceEEEE-eecCCCC----c-ccccccccC--C--CcEEEEEEcCCceEEEEEEEc
Q 016234 259 AVTFVWN--GQEGEDVLLV-GDFTGNW----K-DPIKATHKG--G--SRYEVEIRLTQGKYYYKYIVN 314 (393)
Q Consensus 259 ~v~f~w~--~~~~~~V~l~-GsF~~~W----~-~~~~m~~~~--~--g~~~~~~~L~~G~y~YkF~VD 314 (393)
.|+|+.. ....++|.|. |+=. +| . ...+|.+.. + ..|++++.++..+..|.|.|-
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~-~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~ 88 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPY-EEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELE 88 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETT-SETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCc-cccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEE
Confidence 4555555 3467888886 5555 55 1 146676542 2 588999999999888888883
No 121
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=58.86 E-value=25 Score=27.53 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=13.2
Q ss_pred HhCCCeEEEEcCCCCChh
Q 016234 183 LKKNHRVFVTCTTGLNRS 200 (393)
Q Consensus 183 l~~g~~VLVHC~aGisRS 200 (393)
+..+.+|+|+|..|. ||
T Consensus 51 ~~~~~~iv~~c~~g~-~s 67 (99)
T cd01527 51 LVGANAIIFHCRSGM-RT 67 (99)
T ss_pred CCCCCcEEEEeCCCc-hH
Confidence 345689999999984 65
No 122
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=58.24 E-value=27 Score=27.21 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=38.9
Q ss_pred ccceeeeeCC--CCceEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEEEEE-c-CeeecC
Q 016234 258 HAVTFVWNGQ--EGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYKYIV-N-GQWRHS 320 (393)
Q Consensus 258 ~~v~f~w~~~--~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~YkF~V-D-G~w~~d 320 (393)
-.|.+.+.+. .-.+|+|.++=+.+| .+|.+.-+..|.+.-.++.|-+.+|+.. | |+|+..
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4566666632 347799994433257 6788777889999877777899999988 7 887654
No 123
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=57.97 E-value=19 Score=36.41 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=30.2
Q ss_pred EEEeecCCCCcccccccc-cCCCcEEEEEE--cCCceEEEEEEEcCe
Q 016234 273 LLVGDFTGNWKDPIKATH-KGGSRYEVEIR--LTQGKYYYKYIVNGQ 316 (393)
Q Consensus 273 ~l~GsF~~~W~~~~~m~~-~~~g~~~~~~~--L~~G~y~YkF~VDG~ 316 (393)
.+.|+|.+ ....++. -++|.|+..+. .+||+|+.++.+||.
T Consensus 152 ~vvg~f~D---dG~g~DE~p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED---DGEGLDERPGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc---CCccCCCCCCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 47799874 2344433 35789988876 679999999999974
No 124
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=56.81 E-value=12 Score=29.47 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=19.1
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
..+.+|+|+|..|. || ..++..| ...|++
T Consensus 59 ~~~~~ivv~C~~G~-rs-~~aa~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SS-QFVAELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cH-HHHHHHH-HHcCce
Confidence 45789999999994 77 4444433 445653
No 125
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=56.67 E-value=27 Score=33.22 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=54.1
Q ss_pred CeEEcCCcCCcccH-HHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCC---ccc--cccHHH
Q 016234 101 QIYVGSCIQKEADV-ETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDS---FDM--RKKLPF 174 (393)
Q Consensus 101 ~LylGs~~~~a~d~-~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~---~~l--~~~l~~ 174 (393)
.+.+|..- +..++ +++++++|+.||+.++..-.. -.....+.|++.||.|+++.=+.... .++ ..-+.+
T Consensus 46 ~v~~G~lg-~~~~l~~~l~~~~i~~vIDATHPfA~~----is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~e 120 (249)
T PF02571_consen 46 EVRVGRLG-DEEGLAEFLRENGIDAVIDATHPFAAE----ISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEE 120 (249)
T ss_pred eEEECCCC-CHHHHHHHHHhCCCcEEEECCCchHHH----HHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHH
Confidence 47788863 45555 667889999999999875321 12346788999999999875332221 122 233666
Q ss_pred HHHHHHHHHhCCCeEEE
Q 016234 175 CVGLLLRLLKKNHRVFV 191 (393)
Q Consensus 175 av~fI~~~l~~g~~VLV 191 (393)
|++.+.+. .+++||+
T Consensus 121 A~~~l~~~--~~~~ifl 135 (249)
T PF02571_consen 121 AAELLKEL--GGGRIFL 135 (249)
T ss_pred HHHHHhhc--CCCCEEE
Confidence 66666443 3478887
No 126
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=54.92 E-value=30 Score=27.28 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=18.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
++.+|+|+|..| .|| +.++.+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs-~~~~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRS-MQVAQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chH-HHHHHHHHH-cCCc
Confidence 478999999998 487 444444444 5654
No 127
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=53.02 E-value=25 Score=30.95 Aligned_cols=30 Identities=17% Similarity=0.006 Sum_probs=21.2
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
.++.+|+|+|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3578999999998767743 45555666654
No 128
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=52.05 E-value=43 Score=31.84 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=54.0
Q ss_pred CeEEcCCcCCcccH-HHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCC---Cc--cccccHHH
Q 016234 101 QIYVGSCIQKEADV-ETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSD---SF--DMRKKLPF 174 (393)
Q Consensus 101 ~LylGs~~~~a~d~-~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~---~~--~l~~~l~~ 174 (393)
.+..|..- +..++ +.+++++|+.||+.++..-.. -.....+.|++.||.|+++.=+... .+ ....-+++
T Consensus 45 ~v~~G~l~-~~~~l~~~l~~~~i~~VIDATHPfA~~----is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~ 119 (248)
T PRK08057 45 PVRVGGFG-GAEGLAAYLREEGIDLVIDATHPYAAQ----ISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEE 119 (248)
T ss_pred eEEECCCC-CHHHHHHHHHHCCCCEEEECCCccHHH----HHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHH
Confidence 36678763 44555 567899999999999876322 1234678899999999987533211 11 11234677
Q ss_pred HHHHHHHHHhCCCeEEEEcCCC
Q 016234 175 CVGLLLRLLKKNHRVFVTCTTG 196 (393)
Q Consensus 175 av~fI~~~l~~g~~VLVHC~aG 196 (393)
+++.+.+. ++||. +.|
T Consensus 120 a~~~l~~~----~~vll--ttG 135 (248)
T PRK08057 120 AAEALAPF----RRVLL--TTG 135 (248)
T ss_pred HHHHhhcc----CCEEE--ecC
Confidence 77666443 57876 445
No 129
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=51.80 E-value=21 Score=27.95 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
++.+|+++|..|. ||. .++.+| ...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~-~aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RAD-MTASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHH-HHHHHH-HHcCCE
Confidence 3678999999995 773 444444 555653
No 130
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=50.07 E-value=68 Score=26.44 Aligned_cols=52 Identities=27% Similarity=0.540 Sum_probs=33.5
Q ss_pred CceEEEEeecCCCCccc--ccccccC----------CCcEEEEEEcCCc--------eEEEEEEEcCe--eecCC
Q 016234 269 GEDVLLVGDFTGNWKDP--IKATHKG----------GSRYEVEIRLTQG--------KYYYKYIVNGQ--WRHST 321 (393)
Q Consensus 269 ~~~V~l~GsF~~~W~~~--~~m~~~~----------~g~~~~~~~L~~G--------~y~YkF~VDG~--w~~d~ 321 (393)
.|+|.|.=+|| +|... ++..... -..|..++.|++. .+--+|.++|. |-.+.
T Consensus 33 eK~V~VryT~D-~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~eyWDNN~ 106 (113)
T PF03370_consen 33 EKEVTVRYTFD-NWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEYWDNNN 106 (113)
T ss_dssp SEEEEEEEETS-CTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEEEESTT
T ss_pred CeEEEEEEeeC-CCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEEecCCC
Confidence 47799999999 99752 2211111 1478888988754 45568899986 76554
No 131
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=49.77 E-value=28 Score=27.12 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=18.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
+..+|+|+|..|. |+.+.-++..+...|.
T Consensus 49 ~~~~ivl~c~~G~-~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGG-EDLAPRAARRLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCC-chHHHHHHHHHHHcCc
Confidence 3678999999985 4433333444454454
No 132
>smart00400 ZnF_CHCC zinc finger.
Probab=49.77 E-value=20 Score=25.49 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.6
Q ss_pred EEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHH
Q 016234 190 FVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFV 223 (393)
Q Consensus 190 LVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~v 223 (393)
..||.+ -++.+ =++.++|..+|+++.+|++++
T Consensus 23 ~~~Cf~-cg~gG-d~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGG-NVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCC-CHHHHHHHHHCcCHHHHHHHh
Confidence 477875 35554 458888889999999999876
No 133
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=49.42 E-value=17 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhc
Q 016234 201 PASVIAYLHWMTDTSLHAAYNFVNGL 226 (393)
Q Consensus 201 ~tlv~aYLm~~~g~sl~eA~~~vr~~ 226 (393)
-.-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 35577899999999999999999964
No 134
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=48.13 E-value=1.2e+02 Score=29.78 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=58.8
Q ss_pred HHHHhCCCce-EEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEc
Q 016234 115 ETLSKAGITA-VLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTC 193 (393)
Q Consensus 115 ~~L~~~GIt~-Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC 193 (393)
+.|++.||++ |||+-.-++ +|.+.+...+++.|.- +-++++.... =|-. .+.+.+.+.+++-++
T Consensus 212 ~~L~~~GIsa~Vi~m~tIKP-----iD~~~i~~~A~~t~~I---vT~EeHsi~G---GlGs---aVAEvlse~~p~~~~- 276 (312)
T COG3958 212 EILKKEGISAAVINMFTIKP-----IDEQAILKAARETGRI---VTAEEHSIIG---GLGS---AVAEVLSENGPTPMR- 276 (312)
T ss_pred HHHHhcCCCEEEEecCccCC-----CCHHHHHHHHhhcCcE---EEEecceeec---chhH---HHHHHHHhcCCcceE-
Confidence 5789999986 889988775 4555666666665421 1222222111 1222 234445555555554
Q ss_pred CCCC----ChhHHHHHHHHHHHcCCCHHHHHHHHhh
Q 016234 194 TTGL----NRSPASVIAYLHWMTDTSLHAAYNFVNG 225 (393)
Q Consensus 194 ~aGi----sRS~tlv~aYLm~~~g~sl~eA~~~vr~ 225 (393)
.-|+ +||+.. .+|..++|++.+.-.+.+++
T Consensus 277 riGvp~~fg~sg~~--~~Ll~~ygl~~~~I~~~v~~ 310 (312)
T COG3958 277 RIGVPDTFGRSGKA--DELLDYYGLDPESIAARVLE 310 (312)
T ss_pred EecCCchhccccch--HHHHHHhCCCHHHHHHHHHh
Confidence 3344 888877 89999999999988887764
No 135
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=47.70 E-value=25 Score=35.52 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 187 HRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 187 ~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
.+|+|||..| .|| ..++..|. ..|+
T Consensus 333 ~~Ivv~C~sG-~RS-~~Aa~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASG-IRS-ADFIEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCC-hhH-HHHHHHHH-HcCC
Confidence 3899999999 488 45555554 3454
No 136
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=46.74 E-value=45 Score=31.88 Aligned_cols=84 Identities=11% Similarity=0.195 Sum_probs=50.4
Q ss_pred eEEcCCcCCcccH-HHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEecc---CCCCccccccHHHHHH
Q 016234 102 IYVGSCIQKEADV-ETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIR---DSDSFDMRKKLPFCVG 177 (393)
Q Consensus 102 LylGs~~~~a~d~-~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~---D~~~~~l~~~l~~av~ 177 (393)
+..|.. +..++ +.+++.+|+.||+.++..-.. -.....+.|++.||.|+++.=+ +.+.-....-+.++++
T Consensus 47 v~~g~l--~~~~l~~~l~~~~i~~VIDAtHPfA~~----is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~ 120 (256)
T TIGR00715 47 VHTGAL--DPQELREFLKRHSIDILVDATHPFAAQ----ITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATR 120 (256)
T ss_pred EEECCC--CHHHHHHHHHhcCCCEEEEcCCHHHHH----HHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHH
Confidence 445553 44445 678899999999999875321 1234678899999999998422 1111122233667776
Q ss_pred HHHHHHhCCCeEEE
Q 016234 178 LLLRLLKKNHRVFV 191 (393)
Q Consensus 178 fI~~~l~~g~~VLV 191 (393)
.+......+++||.
T Consensus 121 ~~~~~~~~~~~i~l 134 (256)
T TIGR00715 121 VAYQPYLRGKRVFL 134 (256)
T ss_pred HhhhccccCCcEEE
Confidence 55331113567876
No 137
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=46.30 E-value=50 Score=24.98 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=18.2
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
..+.+|+|+|..|. |+ ..+++++...|..
T Consensus 54 ~~~~~iv~~c~~g~-~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HH--HHHHHHHHHcCCC
Confidence 34689999997764 55 3334555555544
No 138
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=43.29 E-value=66 Score=32.79 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=60.1
Q ss_pred HhCCCceEEecCCCCCccccCCChhhhhhHhhh-CCeEEEEEeccCC------CCccccccHHHHHHHHHHHHhCC-CeE
Q 016234 118 SKAGITAVLNFQSGTEAENWGIDYKSINESCQK-FNLLMINYPIRDS------DSFDMRKKLPFCVGLLLRLLKKN-HRV 189 (393)
Q Consensus 118 ~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~-~gi~y~~ipi~D~------~~~~l~~~l~~av~fI~~~l~~g-~~V 189 (393)
.++|-.+|.+|....+.. .+++..-+ ..+-.=.+|+.+. ...++ .-+..++.|+++.++| .=+
T Consensus 87 ~~~GADtiMDLStGgdl~-------~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~m--t~d~~~~~ie~qa~dGVDfm 157 (423)
T TIGR00190 87 IKYGADTVMDLSTGGDLD-------EIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDM--DEDDMFRAIEKQAKDGVDFM 157 (423)
T ss_pred HHcCCCeEeeccCCCCHH-------HHHHHHHHcCCCCccCccHHHHHHHhcCChhhC--CHHHHHHHHHHHHHhCCCEE
Confidence 367999999999887633 23332222 2333333444321 11111 2456677788887776 456
Q ss_pred EEEcC-----------CC-----CChhHHHHHHHHHHHcCCC-----HHHHHHHHhh
Q 016234 190 FVTCT-----------TG-----LNRSPASVIAYLHWMTDTS-----LHAAYNFVNG 225 (393)
Q Consensus 190 LVHC~-----------aG-----isRS~tlv~aYLm~~~g~s-----l~eA~~~vr~ 225 (393)
-|||. .| +||-+++.++|++....-+ +++-++.+++
T Consensus 158 TiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~ 214 (423)
T TIGR00190 158 TIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKE 214 (423)
T ss_pred EEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 89995 11 4999999999999876543 4555555554
No 139
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=43.06 E-value=71 Score=26.50 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=34.5
Q ss_pred ceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEEEEEcCe
Q 016234 260 VTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQ 316 (393)
Q Consensus 260 v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~YkF~VDG~ 316 (393)
+.+++.| ...+.|+|. +|++ +..+...+|.|.+-.+-+.-.+.|-..+|+.
T Consensus 23 ~~lk~~G----~~~~~g~~g-~W~~-iaA~et~~GgyqVlWk~~~~~~~~vW~tDsn 73 (109)
T PF07483_consen 23 PQLKYNG----QPVVAGQFG-GWQP-IAAEETSNGGYQVLWKNPGTDQFGVWNTDSN 73 (109)
T ss_pred cEEEECC----EEEecCccC-Ccce-eeeEEecCCeeEEEEecCCCCeEEEEEecCC
Confidence 3445553 567889999 9988 7775567788998888444345555566643
No 140
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=41.20 E-value=45 Score=28.78 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEcCCC
Q 016234 171 KLPFCVGLLLRLLKKNHRVFVTCTTG 196 (393)
Q Consensus 171 ~l~~av~fI~~~l~~g~~VLVHC~aG 196 (393)
.+.-++..++++.++|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 56778999999999999999999643
No 141
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=40.85 E-value=45 Score=28.55 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCC
Q 016234 172 LPFCVGLLLRLLKKNHRVFVTCTT 195 (393)
Q Consensus 172 l~~av~fI~~~l~~g~~VLVHC~a 195 (393)
..-+++.++++.++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567889999999999999999964
No 142
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=40.00 E-value=52 Score=28.97 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEcCCC
Q 016234 171 KLPFCVGLLLRLLKKNHRVFVTCTTG 196 (393)
Q Consensus 171 ~l~~av~fI~~~l~~g~~VLVHC~aG 196 (393)
.+.-+++.+++++.+|.+|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 57788999999999999999999654
No 143
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=39.81 E-value=35 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=18.6
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
..+.+|+|+|..| .||+. ++.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4567899999988 57733 44444 55564
No 144
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=39.68 E-value=28 Score=33.40 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=18.3
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
..+.+|+|+|..|+ || +.++.+| ...|..
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~~~~l-~~~G~~ 257 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVVVLAL-ATLDVP 257 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHHHHHH-HHcCCC
Confidence 34678999999986 55 4443333 455543
No 145
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=39.31 E-value=15 Score=29.71 Aligned_cols=11 Identities=27% Similarity=1.008 Sum_probs=9.3
Q ss_pred CCeEEEEcCCC
Q 016234 186 NHRVFVTCTTG 196 (393)
Q Consensus 186 g~~VLVHC~aG 196 (393)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36899999877
No 146
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=39.25 E-value=35 Score=31.07 Aligned_cols=40 Identities=25% Similarity=0.702 Sum_probs=24.0
Q ss_pred CCcccccccccCCCcEEEEEEcC-CceEEEEEEE--c--CeeecCC
Q 016234 281 NWKDPIKATHKGGSRYEVEIRLT-QGKYYYKYIV--N--GQWRHST 321 (393)
Q Consensus 281 ~W~~~~~m~~~~~g~~~~~~~L~-~G~y~YkF~V--D--G~w~~d~ 321 (393)
.|+. ++|....+..|+..+.+. +|.|+|+..- | +.|.++-
T Consensus 56 ~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~~ 100 (187)
T PF11896_consen 56 EWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHDL 100 (187)
T ss_dssp B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHHH
T ss_pred ccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHhh
Confidence 6877 999888888999999864 7999998653 4 4576653
No 147
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=39.09 E-value=3.6e+02 Score=26.44 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=50.8
Q ss_pred HHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEecc-C--CCCccccccHHHHHHHHHHHH-------
Q 016234 114 VETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIR-D--SDSFDMRKKLPFCVGLLLRLL------- 183 (393)
Q Consensus 114 ~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~-D--~~~~~l~~~l~~av~fI~~~l------- 183 (393)
.+.|++++|..+|-+..+... .....+.+..++..+.+|-. | .+..+..-=|+.|++++-+++
T Consensus 84 ~~~l~~~~Id~Li~IGGdgs~-------~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~~ta 156 (301)
T TIGR02482 84 VENLKKLGIEGLVVIGGDGSY-------TGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTA 156 (301)
T ss_pred HHHHHHcCCCEEEEeCCchHH-------HHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHHHHh
Confidence 357899999999999887642 22344445578999999963 3 333333333555555544442
Q ss_pred hCCCeEEEEcCCCCChhHHHHHH
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIA 206 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~a 206 (393)
....+|+|-=.+| |.+..+++
T Consensus 157 ~s~~rv~ivEvMG--R~~G~lAl 177 (301)
T TIGR02482 157 TSHERAFVIEVMG--RHAGDLAL 177 (301)
T ss_pred hcCCCEEEEEeCC--CCHHHHHH
Confidence 2245788777777 44444443
No 148
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=38.19 E-value=37 Score=32.67 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=28.9
Q ss_pred hHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEcC
Q 016234 146 ESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCT 194 (393)
Q Consensus 146 ~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC~ 194 (393)
.++++.|+.|+. |++.++ +++.++.++.+.+-.++|+||..
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 456778999987 676554 56666777777666899999964
No 149
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=37.71 E-value=1.2e+02 Score=24.33 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=13.3
Q ss_pred CCCeEEEEcCCCCChhHHH
Q 016234 185 KNHRVFVTCTTGLNRSPAS 203 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tl 203 (393)
...+|+|||..+-.|+...
T Consensus 61 ~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred CCCeEEEEeecCCcchHHH
Confidence 4578999998443577544
No 150
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=37.23 E-value=58 Score=29.79 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHH
Q 016234 170 KKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYL 208 (393)
Q Consensus 170 ~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYL 208 (393)
+.+.++++.|.+++.++++|++- |.|+|++++.-+-
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 46889999999999999999985 8888966554443
No 151
>PRK14071 6-phosphofructokinase; Provisional
Probab=36.46 E-value=2.9e+02 Score=27.82 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=50.8
Q ss_pred cHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEecc---CCCCccccccHHHHHHHHHHHHh-----
Q 016234 113 DVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIR---DSDSFDMRKKLPFCVGLLLRLLK----- 184 (393)
Q Consensus 113 d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~---D~~~~~l~~~l~~av~fI~~~l~----- 184 (393)
-++.|++++|.++|-+....... ...++.+..+|..+.+|-. |.+..+...=|+.|++++.+++.
T Consensus 99 ~~~~l~~~~Id~Li~IGGdgS~~-------~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~~~~~id~i~~t 171 (360)
T PRK14071 99 IIDGYHSLGLDALIGIGGDGSLA-------ILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFT 171 (360)
T ss_pred HHHHHHHcCCCEEEEECChhHHH-------HHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHHHHHHHHHHHhh
Confidence 35788999999999998876421 2334444348999999964 33333443346666666555543
Q ss_pred --CCCeEEEEcCCCC
Q 016234 185 --KNHRVFVTCTTGL 197 (393)
Q Consensus 185 --~g~~VLVHC~aGi 197 (393)
...+|+|.=.+|.
T Consensus 172 a~s~~rv~ivEvMGR 186 (360)
T PRK14071 172 AASHNRVMILEVMGR 186 (360)
T ss_pred hcccCCEEEEEECCC
Confidence 2457888888884
No 152
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=35.76 E-value=38 Score=32.95 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.8
Q ss_pred eEEEEcCCCCChhHHHH
Q 016234 188 RVFVTCTTGLNRSPASV 204 (393)
Q Consensus 188 ~VLVHC~aGisRS~tlv 204 (393)
.|-|=|++|..||.+++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 68899999999997765
No 153
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=35.70 E-value=39 Score=29.47 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcC
Q 016234 172 LPFCVGLLLRLLKKNHRVFVTCT 194 (393)
Q Consensus 172 l~~av~fI~~~l~~g~~VLVHC~ 194 (393)
+..++.+++++...|.+|+|+|.
T Consensus 15 ~~~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 15 LAAACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeC
Confidence 33788999999999999999995
No 154
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=34.17 E-value=57 Score=33.35 Aligned_cols=99 Identities=13% Similarity=0.239 Sum_probs=59.8
Q ss_pred HhCCCceEEecCCCCCccccCCChhhhhhHhh-hCCeEEEEEeccC---------CCCccccccHHHHHHHHHHHHhCC-
Q 016234 118 SKAGITAVLNFQSGTEAENWGIDYKSINESCQ-KFNLLMINYPIRD---------SDSFDMRKKLPFCVGLLLRLLKKN- 186 (393)
Q Consensus 118 ~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~-~~gi~y~~ipi~D---------~~~~~l~~~l~~av~fI~~~l~~g- 186 (393)
.++|-.+|.+|....+... +++..- ...+-.=.+|+.+ ....++ .-+..++.|+++.++|
T Consensus 87 ~~~GADtiMDLStggdl~~-------iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~m--t~d~~~~~ie~qa~~GV 157 (431)
T PRK13352 87 VKYGADTIMDLSTGGDLDE-------IRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDM--TEDDLFDVIEKQAKDGV 157 (431)
T ss_pred HHcCCCeEeeccCCCCHHH-------HHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhC--CHHHHHHHHHHHHHhCC
Confidence 3679999999998876432 232222 2223333344422 111121 2455667788887776
Q ss_pred CeEEEEcCC---------------C-CChhHHHHHHHHHHHcCCC-----HHHHHHHHhh
Q 016234 187 HRVFVTCTT---------------G-LNRSPASVIAYLHWMTDTS-----LHAAYNFVNG 225 (393)
Q Consensus 187 ~~VLVHC~a---------------G-isRS~tlv~aYLm~~~g~s-----l~eA~~~vr~ 225 (393)
.=+-|||.- | +||-+++.++|++....-+ +++-++..++
T Consensus 158 DfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~ 217 (431)
T PRK13352 158 DFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKE 217 (431)
T ss_pred CEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 456899951 2 4999999999999876542 5555666554
No 155
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=33.88 E-value=45 Score=32.46 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHH----hCCC---eEEEEcCCCCChhHHHHH
Q 016234 170 KKLPFCVGLLLRLL----KKNH---RVFVTCTTGLNRSPASVI 205 (393)
Q Consensus 170 ~~l~~av~fI~~~l----~~g~---~VLVHC~aGisRS~tlv~ 205 (393)
+++....++++.++ ++|+ .|-|=|++|..||.+++=
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 34555555555544 2342 478999999999976653
No 156
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=33.82 E-value=1.6e+02 Score=29.49 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
++.+|+|+|..|-.||..+ +.++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~a--a~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSV--QQWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHH--HHHHHHcCC
Confidence 5779999996443588554 344455565
No 157
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=33.27 E-value=40 Score=32.24 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHH
Q 016234 195 TGLNRSPASVIAYLHWMTDTSLHAAYNF 222 (393)
Q Consensus 195 aGisRS~tlv~aYLm~~~g~sl~eA~~~ 222 (393)
-|+|||++.+.+-|+. |++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 4999999988887764 8888888665
No 158
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=33.05 E-value=40 Score=32.65 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=21.5
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHH
Q 016234 195 TGLNRSPASVIAYLHWMTDTSLHAAYNF 222 (393)
Q Consensus 195 aGisRS~tlv~aYLm~~~g~sl~eA~~~ 222 (393)
-|+|||++.+.+-|+. |++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 4999999998887774 8888888665
No 159
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=32.95 E-value=42 Score=32.18 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCCCChhHHHHHHHHHHHcCCCHHHHHHH
Q 016234 194 TTGLNRSPASVIAYLHWMTDTSLHAAYNF 222 (393)
Q Consensus 194 ~aGisRS~tlv~aYLm~~~g~sl~eA~~~ 222 (393)
--|+|||++.+.+-++. |++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 35999999888887764 8888888765
No 160
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.92 E-value=91 Score=29.82 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=50.8
Q ss_pred eEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCC-ccccccHHHHHHHHH
Q 016234 102 IYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDS-FDMRKKLPFCVGLLL 180 (393)
Q Consensus 102 LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~-~~l~~~l~~av~fI~ 180 (393)
.-+|+......-.++|++++|+.||+.++..-.. -.+...+.|++.||-|+++.=+.... .+--..+.+.-+.++
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~----iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~ 122 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAAR----ISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAE 122 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHH----HHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHH
Confidence 4556655233344788999999999999775211 12235678999999999876543322 121122333333333
Q ss_pred HHHhCCCeEEEE
Q 016234 181 RLLKKNHRVFVT 192 (393)
Q Consensus 181 ~~l~~g~~VLVH 192 (393)
.+.+.+++||.-
T Consensus 123 ~~~~~~~rVflt 134 (257)
T COG2099 123 AAKQLGRRVFLT 134 (257)
T ss_pred HHhccCCcEEEe
Confidence 333346777763
No 161
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=32.90 E-value=43 Score=26.13 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=19.1
Q ss_pred HhCCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 183 LKKNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 183 l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
+..+.+|+|+|..| .||. . ++.++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~-~-~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSA-L-AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHH-H-HHHHHHHcCh
Confidence 35678999999988 4763 3 3445555553
No 162
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=32.85 E-value=75 Score=25.43 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=22.3
Q ss_pred ccceeeeeC--CCCceEEEEeecCCCCcccccccccCCCcEEEEE-EcCCceEEEE
Q 016234 258 HAVTFVWNG--QEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEI-RLTQGKYYYK 310 (393)
Q Consensus 258 ~~v~f~w~~--~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~-~L~~G~y~Yk 310 (393)
.+|+++|.. ....++.+.+ ++ ++ ..+. .+...++++ .++||+|+|-
T Consensus 43 ~~v~l~~~N~~~~~h~~~i~~-~~--~~--~~l~--~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 43 QPVTLTFTNNDSRPHEFVIPD-LG--IS--KVLP--PGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp CEEEEEEEE-SSS-EEEEEGG-GT--EE--EEE---TT-EEEEEEEE-S-EEEEEB
T ss_pred CeEEEEEEECCCCcEEEEECC-Cc--eE--EEEC--CCCEEEEEEcCCCCEEEEEE
Confidence 467777773 3334444443 32 22 2232 234566665 6899998873
No 163
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=32.81 E-value=1.3e+02 Score=27.03 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=25.1
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHH
Q 016234 168 MRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPAS 203 (393)
Q Consensus 168 l~~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tl 203 (393)
+.+.+.++.+.|-+++.+|++||+ | |-|+|++=
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~-c--GNGgSaad 55 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLA-C--GNGGSAAD 55 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEE-E--CCCcchhh
Confidence 345677888889999999999997 4 66677543
No 164
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=32.51 E-value=83 Score=30.35 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHhCCCceEEecCCCCCcccc--CCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHH----HhC-CC
Q 016234 115 ETLSKAGITAVLNFQSGTEAENW--GIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRL----LKK-NH 187 (393)
Q Consensus 115 ~~L~~~GIt~Vvnl~~~~~~~~~--~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~----l~~-g~ 187 (393)
...+++|-++.|...-+....+- ....+...+.|++.|+.|+.+-.+|-.+.. -...+-+||.+- +++ |+
T Consensus 124 ~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~---gv~gaqqfIlE~vp~~i~kYGk 200 (275)
T PF12683_consen 124 WAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDV---GVAGAQQFILEDVPKWIKKYGK 200 (275)
T ss_dssp HHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTC---HHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHhCC
Confidence 35578899999998766654421 112245678899999999999777633221 134445555443 333 88
Q ss_pred eEEEEcCCC
Q 016234 188 RVFVTCTTG 196 (393)
Q Consensus 188 ~VLVHC~aG 196 (393)
.+.+.|+..
T Consensus 201 dtaff~TN~ 209 (275)
T PF12683_consen 201 DTAFFCTND 209 (275)
T ss_dssp --EEEESSH
T ss_pred ceeEEecCc
Confidence 999999865
No 165
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=32.34 E-value=64 Score=25.37 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 186 NHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
+.+|+|+|..|. ||..+ +..+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 678999999996 76433 334445554
No 166
>PF11343 DUF3145: Protein of unknown function (DUF3145); InterPro: IPR021491 This family of proteins with unknown function appear to be restricted to Actinobacteria.
Probab=31.84 E-value=68 Score=28.24 Aligned_cols=66 Identities=24% Similarity=0.481 Sum_probs=43.6
Q ss_pred ccceeeeeCCCCceEEEEeecCCCCccccc----c----cccCCCcEEEEEEcCCceEEEEEEEcCe-eecCCCCC---e
Q 016234 258 HAVTFVWNGQEGEDVLLVGDFTGNWKDPIK----A----THKGGSRYEVEIRLTQGKYYYKYIVNGQ-WRHSTISP---T 325 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~GsF~~~W~~~~~----m----~~~~~g~~~~~~~L~~G~y~YkF~VDG~-w~~d~~~p---~ 325 (393)
.+|.+.|..+++..=.+..+++ |..+.- + ..=..=.|++|-+-.+| +||. |.+-|..- .
T Consensus 25 ~~v~l~Wt~Qpa~pG~~Rae~~--W~g~~GTga~LasaLr~W~~lRfEVTEdps~g-------~DG~R~s~tP~LGi~~a 95 (158)
T PF11343_consen 25 APVSLDWTPQPAAPGTLRAEVS--WVGPVGTGARLASALRGWPHLRFEVTEDPSPG-------VDGERWSHTPDLGIFHA 95 (158)
T ss_pred CCcCCccccCCCCCCceEEEEe--eecCCCcHHHHHHHHhcCCceEEEEEeCCCCC-------CCCceEecCCCCcceee
Confidence 5688888877777767777775 865221 1 10012278888777778 7886 99999875 5
Q ss_pred eeCCCCC
Q 016234 326 ERDDKGN 332 (393)
Q Consensus 326 ~~d~~G~ 332 (393)
.+|..|+
T Consensus 96 ~t~a~Gd 102 (158)
T PF11343_consen 96 QTDANGD 102 (158)
T ss_pred eecCCCC
Confidence 5666664
No 167
>PRK13938 phosphoheptose isomerase; Provisional
Probab=31.79 E-value=86 Score=28.63 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=30.6
Q ss_pred cccccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHH
Q 016234 167 DMRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHW 210 (393)
Q Consensus 167 ~l~~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~ 210 (393)
.+.+.+.++.+.+.+++.+|++|++- |.|+|+.++...-++
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 44456888888888889999999985 888886665554443
No 168
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=31.75 E-value=3.6e+02 Score=28.14 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCeEEcCCcCCcccH----HHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCC--eEEEEEecc-CCC--Cccccc
Q 016234 100 EQIYVGSCIQKEADV----ETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFN--LLMINYPIR-DSD--SFDMRK 170 (393)
Q Consensus 100 p~LylGs~~~~a~d~----~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~g--i~y~~ipi~-D~~--~~~l~~ 170 (393)
++-+||+.- ...+. +.|+++||..++.+..+..... ...+.+.+++.| |..+.+|-. |.+ ..+.+-
T Consensus 152 GGTiLGTSR-~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~----A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~ 226 (459)
T PTZ00286 152 GGTILGSSR-GGFDPKVMVDTLIRHGINILFTLGGDGTHRG----ALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESF 226 (459)
T ss_pred CCceeccCC-ChhhHHHHHHHHHHcCCCEEEEeCCchHHHH----HHHHHHHHHHhCCCceEEEeccccCCCCCCcccCc
Confidence 345667653 33343 5788999999999998865321 112334444455 899999863 332 223222
Q ss_pred cHHHHHHHHHHHHh--------CCCeEEEEcCCCCChhHHHHHHH
Q 016234 171 KLPFCVGLLLRLLK--------KNHRVFVTCTTGLNRSPASVIAY 207 (393)
Q Consensus 171 ~l~~av~fI~~~l~--------~g~~VLVHC~aGisRS~tlv~aY 207 (393)
=|+.|++++.+++. ...+|+|-=.+| |.+..++++
T Consensus 227 GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMG--R~sG~LAl~ 269 (459)
T PTZ00286 227 GFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMG--RDSGFIALH 269 (459)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecC--cchhHHHHH
Confidence 36666666555542 133576655555 555555444
No 169
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=31.20 E-value=68 Score=30.96 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.4
Q ss_pred eEEEEcCCCCChhHHHH
Q 016234 188 RVFVTCTTGLNRSPASV 204 (393)
Q Consensus 188 ~VLVHC~aGisRS~tlv 204 (393)
.|.|=|++|..||.+++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 46889999999997665
No 170
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=31.17 E-value=69 Score=25.17 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s 215 (393)
++.+|+|+|..|. || +. ++.++...|..
T Consensus 65 ~~~~ivv~c~~g~-~s-~~-~~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RS-KA-AAELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HH-HH-HHHHHHHcCCc
Confidence 4679999999985 66 33 34555666653
No 171
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=30.73 E-value=53 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=18.5
Q ss_pred hCCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 184 KKNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
..+.+|+|+|..|. ||. .++. .+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~-~aa~-~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQ-TAVR-KLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHH-HHHH-HHHHcCC
Confidence 45789999999995 874 3333 3445565
No 172
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=30.69 E-value=47 Score=32.03 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHH
Q 016234 195 TGLNRSPASVIAYLHWMTDTSLHAAYNF 222 (393)
Q Consensus 195 aGisRS~tlv~aYLm~~~g~sl~eA~~~ 222 (393)
-|+|||++.+.+-|+ .|++-++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999998888776 48888888665
No 173
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=30.64 E-value=84 Score=31.41 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.7
Q ss_pred hCCCeEEEEcCCCCChh
Q 016234 184 KKNHRVFVTCTTGLNRS 200 (393)
Q Consensus 184 ~~g~~VLVHC~aGisRS 200 (393)
..|..||.||.+|..++
T Consensus 146 ~~g~~ILThc~sg~lat 162 (339)
T PRK06036 146 EDGDTVLTHCNAGRLAC 162 (339)
T ss_pred cCCCEEEEecCCccccc
Confidence 45778999999997665
No 174
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=30.23 E-value=1.1e+02 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=17.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
.+.+|+|+|..|. ||. .++. ++...|.
T Consensus 57 ~~~~vvlyC~~G~-rS~-~aa~-~L~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSG-MAKD-ILLDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHH-HHHH-HHHHcCC
Confidence 4568999999994 773 3333 3334454
No 175
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=29.82 E-value=1e+02 Score=24.39 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=24.8
Q ss_pred CCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCe
Q 016234 292 GGSRYEVEIRLTQGKYYYKYIVNGQWRHSTISPT 325 (393)
Q Consensus 292 ~~g~~~~~~~L~~G~y~YkF~VDG~w~~d~~~p~ 325 (393)
.+|.=++.++|+||+|...-+. |.+.+-|.+|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 4567788899999999999777 55566665553
No 176
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=29.66 E-value=1e+02 Score=23.66 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=18.3
Q ss_pred HhCCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 183 LKKNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 183 l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
+..+.+|+|+|..|. || ..+ +.++...|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s-~~a-~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SS-AQL-AQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hH-HHH-HHHHHHcCC
Confidence 456789999999774 55 333 444445554
No 177
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.26 E-value=96 Score=31.30 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=10.8
Q ss_pred hCCCeEEEEcCCC
Q 016234 184 KKNHRVFVTCTTG 196 (393)
Q Consensus 184 ~~g~~VLVHC~aG 196 (393)
..|..||.||.+|
T Consensus 165 ~dg~~ILThcnsg 177 (363)
T PRK05772 165 NDGDTVLTQCNAG 177 (363)
T ss_pred CCCCEEEEecCCc
Confidence 4577899999887
No 178
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=28.90 E-value=61 Score=26.30 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCCC-HHHHHHHHhh
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDTS-LHAAYNFVNG 225 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~s-l~eA~~~vr~ 225 (393)
..++|+=||-.| +-++-||+.....+ -.||+.+-..
T Consensus 23 ~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~ 59 (99)
T cd04445 23 KDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASS 59 (99)
T ss_pred Hhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHH
Confidence 347899999987 67999999998875 8888876554
No 179
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=28.68 E-value=92 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=16.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 186 NHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
+..|+|+|..|-.||..+ +.++...|+
T Consensus 74 ~~~vvvyC~~gG~RS~~a--a~~L~~~G~ 100 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSL--AWLLAQIGF 100 (311)
T ss_pred CCcEEEEECCCChHHHHH--HHHHHHcCC
Confidence 445999996433587443 344555565
No 180
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.50 E-value=1.2e+02 Score=24.38 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCH
Q 016234 171 KLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSL 216 (393)
Q Consensus 171 ~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl 216 (393)
.++.|.++|+...+.|.++++.-..+ +||..-.+..| ...|++.
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~ 58 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPV 58 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT-
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCC
Confidence 47889999999999998887766555 68877777777 5567764
No 181
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=28.28 E-value=79 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=17.2
Q ss_pred hCCCeEEEEcC-CCCChhHHHHHHHHHH
Q 016234 184 KKNHRVFVTCT-TGLNRSPASVIAYLHW 210 (393)
Q Consensus 184 ~~g~~VLVHC~-aGisRS~tlv~aYLm~ 210 (393)
.+..+|+|||. +| .|| +.++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs-~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRG-PRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccH-HHHHHHHHH
Confidence 45789999997 77 577 445555554
No 182
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=28.23 E-value=1.6e+02 Score=25.22 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhC--CCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhccCC----------CCCccchhHH
Q 016234 172 LPFCVGLLLRLLKK--NHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGLHLC----------RPDRPAVAWA 239 (393)
Q Consensus 172 l~~av~fI~~~l~~--g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~R~~----------~Pn~~fl~~~ 239 (393)
++...+.+.+.+++ ++-|++-| +-||+.+.| ++.+++++...|-. .-+..++...
T Consensus 60 L~~l~~~i~~fl~~~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD~~~~~~~~lIl~~~~~al~er 126 (136)
T PF05763_consen 60 LHKLLDTIVRFLKENGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKDYALLNNGTLILVVDPEALDER 126 (136)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHHHeeccCCEEEEEEChhhcCHH
Confidence 44444444444443 56778887 579999988 67778887776631 2344567777
Q ss_pred HHHHHHH
Q 016234 240 TRDLIAM 246 (393)
Q Consensus 240 ~~~ll~~ 246 (393)
++.+|++
T Consensus 127 e~~lL~r 133 (136)
T PF05763_consen 127 EWALLRR 133 (136)
T ss_pred HHHHHHH
Confidence 8877764
No 183
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=27.69 E-value=4.6e+02 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCeEEEEcCC
Q 016234 177 GLLLRLLKKNHRVFVTCTT 195 (393)
Q Consensus 177 ~fI~~~l~~g~~VLVHC~a 195 (393)
.+++.+.+.+.+|.|||..
T Consensus 112 ~~~~~a~e~~~pv~iH~~~ 130 (251)
T cd01310 112 AQLELAKELNLPVVIHSRD 130 (251)
T ss_pred HHHHHHHHhCCCeEEEeeC
Confidence 3455555568999999974
No 184
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=27.54 E-value=2.9e+02 Score=27.93 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=55.8
Q ss_pred HHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEecc--CCCCcccccc---------------HH----
Q 016234 115 ETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIR--DSDSFDMRKK---------------LP---- 173 (393)
Q Consensus 115 ~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~--D~~~~~l~~~---------------l~---- 173 (393)
..+++.||+-|+|...-.... -.+.+.+.+++.|+. +.+-+- |.....+.+. +.
T Consensus 65 ~~~~~~gIkvI~NaGg~np~~----~a~~v~eia~e~Gl~-lkvA~V~gDd~~~~v~~~~~~g~~~~~l~~~~~l~~~~~ 139 (362)
T PF07287_consen 65 PAAAEKGIKVITNAGGLNPAG----CADIVREIARELGLS-LKVAVVYGDDLKDEVKELLAEGETIRPLDTGPPLSEWDD 139 (362)
T ss_pred HHHHhCCCCEEEeCCCCCHHH----HHHHHHHHHHhcCCC-eeEEEEECccchHhHHHHHhCCCCCccCCCCCCcchhcc
Confidence 455688999999976554322 123466777788877 444332 1111111000 00
Q ss_pred --------HHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHH
Q 016234 174 --------FCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHA 218 (393)
Q Consensus 174 --------~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~e 218 (393)
--.+=|-++|+.|--|.|- |..==+++++|.+|+.+||+.++
T Consensus 140 ~~~~a~aylGa~pI~~AL~~GADIVI~---GR~~D~Al~~a~~~~~~GW~~~d 189 (362)
T PF07287_consen 140 RIVSANAYLGAEPIVEALEAGADIVIT---GRVADPALFAAPAIHEFGWSEDD 189 (362)
T ss_pred ccceEEEecChHHHHHHHHcCCCEEEe---CcccchHHHHhHHHHHcCCCccc
Confidence 1134466777777666653 43334799999999999998655
No 185
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=27.48 E-value=32 Score=32.34 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=47.8
Q ss_pred CCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccCCChh-----------hhhhHhhhCCeEE-EEEeccCCCCcc
Q 016234 100 EQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWGIDYK-----------SINESCQKFNLLM-INYPIRDSDSFD 167 (393)
Q Consensus 100 p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~-----------~~~~~~~~~gi~y-~~ipi~D~~~~~ 167 (393)
+++-+.. +.-+|++.++..||..||.|+..+..... .+ -....+...|++. +.+.+.-..
T Consensus 5 ~HiH~d~--r~~eDlekMa~sGI~~Vit~AhdP~~~~~---~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~--- 76 (254)
T COG1099 5 SHIHLDV--RGFEDLEKMALSGIREVITLAHDPYPMKT---AEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRA--- 76 (254)
T ss_pred ccccccc--ccHHHHHHHHHhChhhhhhcccCCCCccc---HHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCC---
Confidence 3444444 35788999999999999999988743211 11 1133455566653 334443322
Q ss_pred ccccHHHHHHHHHHHHhCCCeEE
Q 016234 168 MRKKLPFCVGLLLRLLKKNHRVF 190 (393)
Q Consensus 168 l~~~l~~av~fI~~~l~~g~~VL 190 (393)
+...+..++..+...+.+..-|.
T Consensus 77 iP~e~~~~l~~L~~~l~~e~VvA 99 (254)
T COG1099 77 IPPELEEVLEELEELLSNEDVVA 99 (254)
T ss_pred CCchHHHHHHHHHhhcccCCeeE
Confidence 22236677777777776443333
No 186
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=27.19 E-value=2.8e+02 Score=27.64 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=12.7
Q ss_pred HHHHHHHhCCCeEEEEcC
Q 016234 177 GLLLRLLKKNHRVFVTCT 194 (393)
Q Consensus 177 ~fI~~~l~~g~~VLVHC~ 194 (393)
+.++.+...|..|+|||-
T Consensus 124 ~~~~~~~~~g~~v~~H~E 141 (374)
T cd01317 124 RALEYAAMLDLPIIVHPE 141 (374)
T ss_pred HHHHHHHhcCCeEEEecC
Confidence 444555556889999995
No 187
>PLN02884 6-phosphofructokinase
Probab=26.92 E-value=5.7e+02 Score=26.29 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=52.7
Q ss_pred HHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCC--eEEEEEecc-C--CCCccccccHHHHHHHHHHHHh----
Q 016234 114 VETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFN--LLMINYPIR-D--SDSFDMRKKLPFCVGLLLRLLK---- 184 (393)
Q Consensus 114 ~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~g--i~y~~ipi~-D--~~~~~l~~~l~~av~fI~~~l~---- 184 (393)
++.|+++||..+|-+..+..... -..+.+.++..| +..+.+|-. | ....+..-=|+.|++++.+++.
T Consensus 136 ~~~L~~~~Id~LivIGGdgS~~~----a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~l~~ 211 (411)
T PLN02884 136 VDSIEARGINMLFVLGGNGTHAG----ANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYI 211 (411)
T ss_pred HHHHHHcCCCEEEEECCchHHHH----HHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999988765321 112334444456 889999853 3 3333333346666666655543
Q ss_pred ---C-CCeEEEEcCCCCChhHHHHHHH
Q 016234 185 ---K-NHRVFVTCTTGLNRSPASVIAY 207 (393)
Q Consensus 185 ---~-g~~VLVHC~aGisRS~tlv~aY 207 (393)
. ..+|+|.=.+| |.+..++++
T Consensus 212 tA~s~~~rv~iVEvMG--R~aG~LAl~ 236 (411)
T PLN02884 212 EAHSAYHGIGLVKLMG--RSSGFIAMH 236 (411)
T ss_pred hhhccCCcEEEEEeCC--CCHHHHHHH
Confidence 1 35687776766 554444443
No 188
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=26.85 E-value=1.2e+02 Score=30.22 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=10.7
Q ss_pred hCCC----eEEEEcCCC
Q 016234 184 KKNH----RVFVTCTTG 196 (393)
Q Consensus 184 ~~g~----~VLVHC~aG 196 (393)
..|. .||.||.+|
T Consensus 141 ~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 141 KKGVAAPLRVLTHCNTG 157 (331)
T ss_pred cCCCCCCceEEeecCCc
Confidence 4566 799999988
No 189
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=26.69 E-value=1.4e+02 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=16.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHcCC
Q 016234 185 KNHRVFVTCTTGLNRSPASVIAYLHWMTDT 214 (393)
Q Consensus 185 ~g~~VLVHC~aGisRS~tlv~aYLm~~~g~ 214 (393)
.+.+|+|+|..| .|| ..++..| ...|.
T Consensus 59 ~~~~IVlyC~~G-~rS-~~aa~~L-~~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQS-GQAKEIL-SEMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHH-HHHHHHH-HHcCC
Confidence 356799999998 466 3333333 33454
No 190
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.68 E-value=2.1e+02 Score=29.02 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=53.1
Q ss_pred HHHHHhCC-CceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccC-CCCccccccHHHHHHHHHHHHhC--CCeE
Q 016234 114 VETLSKAG-ITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRD-SDSFDMRKKLPFCVGLLLRLLKK--NHRV 189 (393)
Q Consensus 114 ~~~L~~~G-It~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D-~~~~~l~~~l~~av~fI~~~l~~--g~~V 189 (393)
+..+.+.+ +..+|..+..-... +-...+....+|..-.+.+.- .+..++.+..-.++..+.+.+.+ .--|
T Consensus 23 i~~~~~~~~~~~~vi~TGQH~d~------em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~V 96 (383)
T COG0381 23 VKALEKDPDFELIVIHTGQHRDY------EMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLV 96 (383)
T ss_pred HHHHHhCCCCceEEEEecccccH------HHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 35566665 99999988775421 224455556666642222211 13456666677777888887765 5689
Q ss_pred EEEcCCCCChhHHHHHHHHHHHc
Q 016234 190 FVTCTTGLNRSPASVIAYLHWMT 212 (393)
Q Consensus 190 LVHC~aGisRS~tlv~aYLm~~~ 212 (393)
||| | .++.+++.|.-+.++
T Consensus 97 lVh---G-DT~t~lA~alaa~~~ 115 (383)
T COG0381 97 LVH---G-DTNTTLAGALAAFYL 115 (383)
T ss_pred EEe---C-CcchHHHHHHHHHHh
Confidence 999 4 566666644444433
No 191
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=26.59 E-value=1.1e+02 Score=23.51 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=26.3
Q ss_pred cceeeeeCCCCceEEE-EeecCCCCcccccccccCCCcEEEEEEcCCceEEEE
Q 016234 259 AVTFVWNGQEGEDVLL-VGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYK 310 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l-~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~Yk 310 (393)
.|+|++....+..|.. .|.+. ++.-.-.+. ..+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~-~~~~~~~~~-~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLG-EAALKGPMM-KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCc-ccccccccc-CCCCEEEEECC-CCEEEEEE
Confidence 5666666444566654 34543 332111222 23446777766 68988775
No 192
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.51 E-value=65 Score=31.89 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=20.9
Q ss_pred HhCCCeEEEEcCCCC----ChhHHHHHHHHHHHcC
Q 016234 183 LKKNHRVFVTCTTGL----NRSPASVIAYLHWMTD 213 (393)
Q Consensus 183 l~~g~~VLVHC~aGi----sRS~tlv~aYLm~~~g 213 (393)
+.++.+||-||.+|- +=-.++.+-+.++..|
T Consensus 147 l~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~g 181 (346)
T COG0182 147 LPDGDTVLTHCNAGALATVGYGTALGVIRSAHEEG 181 (346)
T ss_pred hccCCeEEeeecCCceeecCccchHHHHHHHHHCC
Confidence 446789999999983 1112555667777766
No 193
>PLN02960 alpha-amylase
Probab=26.44 E-value=1.1e+02 Score=34.39 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=33.4
Q ss_pred cccccCCCcEEEEEE-cCCceEEEEEEEc---Ce-eecCCCC-CeeeCCCCCcceEEEeC
Q 016234 287 KATHKGGSRYEVEIR-LTQGKYYYKYIVN---GQ-WRHSTIS-PTERDDKGNVNNIIIVG 340 (393)
Q Consensus 287 ~m~~~~~g~~~~~~~-L~~G~y~YkF~VD---G~-w~~d~~~-p~~~d~~G~~nnvi~v~ 340 (393)
.|.|..+|.|++.+. +++|. .|||.|+ |. .+.||-. ..+.+..|..-++|...
T Consensus 318 ~~~k~~~gw~~~~ip~~~hG~-~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~~v~~d 376 (897)
T PLN02960 318 ETRKGRKAWLKKYIPAIPHGS-KYRVYFNTPDGPLERVPAWATYVLPDPDGKQWYAIHWE 376 (897)
T ss_pred eeeecCCcEEEEEccCCCCCC-EEEEEEEeCCCceEECCCcceeEeecCCCccceEEEeC
Confidence 366667788888776 67774 7888886 54 4666633 35556666544555433
No 194
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=26.18 E-value=98 Score=26.61 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=36.6
Q ss_pred ccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHH---hC-CC
Q 016234 112 ADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLL---KK-NH 187 (393)
Q Consensus 112 ~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l---~~-g~ 187 (393)
.+...|-+.|=...|++++..|...- +--.-+++|+.-.+..-... --+|+.+.- .. ..
T Consensus 28 ~qvk~L~~~~~~~llDVRepeEfk~g-------------h~~~siNiPy~~~~~~~~l~----~~eF~kqvg~~kp~~d~ 90 (136)
T KOG1530|consen 28 EQVKNLLQHPDVVLLDVREPEEFKQG-------------HIPASINIPYMSRPGAGALK----NPEFLKQVGSSKPPHDK 90 (136)
T ss_pred HHHHHHhcCCCEEEEeecCHHHhhcc-------------CCcceEeccccccccccccC----CHHHHHHhcccCCCCCC
Confidence 34455555565777888876653221 11345677764322111100 013333221 11 35
Q ss_pred eEEEEcCCCCChh
Q 016234 188 RVFVTCTTGLNRS 200 (393)
Q Consensus 188 ~VLVHC~aGisRS 200 (393)
.|.++|..|. ||
T Consensus 91 eiIf~C~SG~-Rs 102 (136)
T KOG1530|consen 91 EIIFGCASGV-RS 102 (136)
T ss_pred cEEEEeccCc-ch
Confidence 7999999996 87
No 195
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=26.14 E-value=1.5e+02 Score=30.49 Aligned_cols=51 Identities=29% Similarity=0.631 Sum_probs=24.4
Q ss_pred Cccceeeee---CCCCceEEEEeecCCCCcccccccccCCCcEEEEEE-cCCc-eEEEEEEEcC
Q 016234 257 THAVTFVWN---GQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIR-LTQG-KYYYKYIVNG 315 (393)
Q Consensus 257 ~~~v~f~w~---~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~-L~~G-~y~YkF~VDG 315 (393)
..++.+.|. .++.+.|...|+.. .....+..-.+.|. |.|| .|.|+|.+++
T Consensus 30 ~~~~~V~~~va~d~~~~~~~~~~~~~--------~~~~~d~t~~v~v~gL~p~t~Y~Y~~~~~~ 85 (453)
T PF09423_consen 30 KAPVPVRWEVATDPEFSNVVRSGTVT--------TTAERDFTVKVDVTGLQPGTRYYYRFVVDG 85 (453)
T ss_dssp SS-EEEEEEEESSTTSSSEEEEEEEE--------E-GGGTTEEEEEE-S--TT-EEEEEEEE--
T ss_pred CCcEEEEEEEECCCCccceEEeccee--------cccCCCeEeecccCCCCCCceEEEEEEEec
Confidence 345555555 33444555555432 22223333444454 8898 6999999964
No 196
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=25.85 E-value=2.9e+02 Score=28.28 Aligned_cols=99 Identities=15% Similarity=0.266 Sum_probs=57.5
Q ss_pred HhCCCceEEecCCCCCccccCCChhhhhhH-hhhCCeEEEEEeccCC------CCccccccHHHHHHHHHHHHhCC-CeE
Q 016234 118 SKAGITAVLNFQSGTEAENWGIDYKSINES-CQKFNLLMINYPIRDS------DSFDMRKKLPFCVGLLLRLLKKN-HRV 189 (393)
Q Consensus 118 ~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~-~~~~gi~y~~ipi~D~------~~~~l~~~l~~av~fI~~~l~~g-~~V 189 (393)
.++|-.+|.+|....+.. .+++. .+...+-.=.+|+.+. ...++ .-+...+.|+++.++| .-+
T Consensus 86 ~~~GADtvMDLStggdl~-------~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~--t~d~~~~~ie~qa~~GVDfm 156 (420)
T PF01964_consen 86 EKAGADTVMDLSTGGDLD-------EIRRAILENSPVPVGTVPIYQAAIRKGGSIVDM--TEDDFFDVIEKQAKDGVDFM 156 (420)
T ss_dssp HHTT-SEEEE---STTHH-------HHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG----HHHHHHHHHHHHHHT--EE
T ss_pred HHhCCCEEEEcCCCCCHH-------HHHHHHHHhCCCccccchHHHHHHHhCCChhhC--CHHHHHHHHHHHHHcCCCEE
Confidence 477999999999887643 33333 3334566667777541 12222 3566778888888777 456
Q ss_pred EEEcCC---------------C-CChhHHHHHHHHHHHcCC-----CHHHHHHHHhh
Q 016234 190 FVTCTT---------------G-LNRSPASVIAYLHWMTDT-----SLHAAYNFVNG 225 (393)
Q Consensus 190 LVHC~a---------------G-isRS~tlv~aYLm~~~g~-----sl~eA~~~vr~ 225 (393)
-|||.- | +||.++++++|++....- .+++-++..|+
T Consensus 157 tiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~ 213 (420)
T PF01964_consen 157 TIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKE 213 (420)
T ss_dssp EE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTT
T ss_pred EEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHH
Confidence 899952 1 499999999999998754 36677777775
No 197
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.63 E-value=61 Score=25.93 Aligned_cols=13 Identities=15% Similarity=0.756 Sum_probs=11.4
Q ss_pred CCeEEEEcCCCCC
Q 016234 186 NHRVFVTCTTGLN 198 (393)
Q Consensus 186 g~~VLVHC~aGis 198 (393)
..+||+-|.+|++
T Consensus 3 ~~~ILl~C~~G~s 15 (95)
T TIGR00853 3 ETNILLLCAAGMS 15 (95)
T ss_pred ccEEEEECCCchh
Confidence 3689999999998
No 198
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=25.61 E-value=1.9e+02 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=12.8
Q ss_pred CCeEEEEcCCCCChhHH
Q 016234 186 NHRVFVTCTTGLNRSPA 202 (393)
Q Consensus 186 g~~VLVHC~aGisRS~t 202 (393)
...|+|||..|-.||+.
T Consensus 66 ~~~iv~~C~~~g~rs~~ 82 (113)
T cd01443 66 VKLAIFYCGSSQGRGPR 82 (113)
T ss_pred CCEEEEECCCCCcccHH
Confidence 46899999986567743
No 199
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=25.16 E-value=2.1e+02 Score=22.62 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=31.7
Q ss_pred cceeeee---CCCCceEEEEeecCCCCcccccccccCCCcEEEEEE--cCCceEEEEEEE---cCe
Q 016234 259 AVTFVWN---GQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIR--LTQGKYYYKYIV---NGQ 316 (393)
Q Consensus 259 ~v~f~w~---~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~--L~~G~y~YkF~V---DG~ 316 (393)
.|++++. ......|.|.+.=...|....+-...+...+++.+. |++|.|.-.|.| ||+
T Consensus 21 ~v~L~F~e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DGH 86 (97)
T PF04234_consen 21 EVTLTFSEPVEPGFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADGH 86 (97)
T ss_dssp SEEEEESS---CCC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEETTSC
T ss_pred EEEEEeCCCCccCccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEecCCC
Confidence 4555555 234678888875331343322212123456777763 888999999988 664
No 200
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.89 E-value=68 Score=23.02 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=14.3
Q ss_pred EEEE-EcCCceEEEEEEE---cCeeecCC
Q 016234 297 EVEI-RLTQGKYYYKYIV---NGQWRHST 321 (393)
Q Consensus 297 ~~~~-~L~~G~y~YkF~V---DG~w~~d~ 321 (393)
+++. .||||+|.++-.+ +|.|..+.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 4554 4999999988766 36777664
No 201
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=24.49 E-value=76 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=24.5
Q ss_pred EEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 016234 190 FVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNGL 226 (393)
Q Consensus 190 LVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~~ 226 (393)
.-||.+ -|..+ =++.++|...++++.+|++++.+.
T Consensus 54 ~~~Cf~-Cg~~G-d~i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGG-DVIDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCC-cHHhHHHHHhCCCHHHHHHHHHHH
Confidence 578985 46664 567888999999999999999854
No 202
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=24.25 E-value=95 Score=24.90 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=18.8
Q ss_pred HhCCCeEEEEcCCCCC-hhHHHHHHHHHHHcCC
Q 016234 183 LKKNHRVFVTCTTGLN-RSPASVIAYLHWMTDT 214 (393)
Q Consensus 183 l~~g~~VLVHC~aGis-RS~tlv~aYLm~~~g~ 214 (393)
+..+.+|+|+|..|.. || .. ++..+...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s-~~-~a~~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGA-TK-AALKLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchH-HH-HHHHHHHcCC
Confidence 3467899999998853 44 33 3344455565
No 203
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=24.06 E-value=1.4e+02 Score=26.22 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=33.8
Q ss_pred cceeeeeCCCCceEEEEeecCCCCcccccccccCCCcEEEEEEc-CCceEEEEEEEc
Q 016234 259 AVTFVWNGQEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRL-TQGKYYYKYIVN 314 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L-~~G~y~YkF~VD 314 (393)
.|..+.... .......|+| +||.-.++-.|-..|.| .+|+|.-+|.|+
T Consensus 69 ~v~y~i~~~-~~~~~~~G~~-------mPM~A~DGpHYG~Nvkl~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 69 TVSYEITKK-GSGKVQEGTF-------MPMVASDGPHYGDNVKLDGPGKYKVTFTIG 117 (151)
T ss_dssp EEEEEEEET-TTTEEEEEEE-------EEEEETTEEEEEEEE-STSSEEEEEEEEEE
T ss_pred EEEEEEEeC-CCCeEEEEec-------ceeecCcCccccccccCCCCccEEEEEEEc
Confidence 455555533 3344778877 57886676678888887 679999999997
No 204
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=23.95 E-value=79 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=13.7
Q ss_pred CeEEEEcCCCCChhHHHHHH
Q 016234 187 HRVFVTCTTGLNRSPASVIA 206 (393)
Q Consensus 187 ~~VLVHC~aGisRS~tlv~a 206 (393)
++|+|.|.+|+|=| +++..
T Consensus 1 ~kilvvCg~G~gtS-~ml~~ 19 (87)
T cd05567 1 KKIVFACDAGMGSS-AMGAS 19 (87)
T ss_pred CEEEEECCCCccHH-HHHHH
Confidence 47999999999844 44433
No 205
>PLN02449 ferrochelatase
Probab=23.90 E-value=1.3e+02 Score=31.68 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=55.5
Q ss_pred eeeCCeEEcCCcCCcccHHHHHhCCCceEEecCCCCCccccC----CChhhhhhHhhhCCe-EEEEEeccCCCCcccccc
Q 016234 97 KITEQIYVGSCIQKEADVETLSKAGITAVLNFQSGTEAENWG----IDYKSINESCQKFNL-LMINYPIRDSDSFDMRKK 171 (393)
Q Consensus 97 ~I~p~LylGs~~~~a~d~~~L~~~GIt~Vvnl~~~~~~~~~~----~~~~~~~~~~~~~gi-~y~~ipi~D~~~~~l~~~ 171 (393)
++-|.=|++.. +.+-++.|.+.|++.|+-+....-.++.- +| -+..+.+++.|+ .|.++|..+..+ .+
T Consensus 329 R~Gp~eWL~P~--t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiD-iE~re~a~e~G~~~~~rVP~LN~~p----~F 401 (485)
T PLN02449 329 RVGPVEWLKPY--TDETIVELGKKGVKSLLAVPISFVSEHIETLEEID-MEYRELALESGIENWGRVPALGCEP----TF 401 (485)
T ss_pred CCCCCCCCCCC--HHHHHHHHHHcCCCeEEEECCcccccchHHHHHHH-HHHHHHHHHcCCceEEEcCCCCCCH----HH
Confidence 34455677764 46677889999999998777665433221 11 135567888998 699999865442 23
Q ss_pred HHHHHHHHHHHHhCCCeEEEEc
Q 016234 172 LPFCVGLLLRLLKKNHRVFVTC 193 (393)
Q Consensus 172 l~~av~fI~~~l~~g~~VLVHC 193 (393)
+....+.+.+.+...+...+.|
T Consensus 402 I~~La~lV~~~l~~~~~~~~~~ 423 (485)
T PLN02449 402 ISDLADAVIEALPYVGAMAVSN 423 (485)
T ss_pred HHHHHHHHHHHhhccccccccc
Confidence 4455566666665423334443
No 206
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=23.90 E-value=1.8e+02 Score=24.22 Aligned_cols=65 Identities=26% Similarity=0.290 Sum_probs=33.9
Q ss_pred ccceeeeeCCCCceEEEE-eecCCCCcccccccccCCCcEEEEEEcCCceEEEEEEEcCeeecCCCCCeeeCCCCCcceE
Q 016234 258 HAVTFVWNGQEGEDVLLV-GDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQWRHSTISPTERDDKGNVNNI 336 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~-GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~YkF~VDG~w~~d~~~p~~~d~~G~~nnv 336 (393)
-.|+|+|... +..|... +..- +.. -.+....+..|+.+++ .+|.|.|. |.|.. .-+.--.
T Consensus 23 dTV~f~n~d~-~Hnv~~~~~~~p--~g~-~~~~s~~g~~~~~tF~-~~G~Y~Y~--------C~pH~------~~GM~G~ 83 (116)
T TIGR02375 23 DTVTFVPTDK-GHNVETIKGMIP--EGA-EAFKSKINEEYTVTVT-EEGVYGVK--------CTPHY------GMGMVAL 83 (116)
T ss_pred CEEEEEECCC-CeeEEEccCCCc--CCc-ccccCCCCCEEEEEeC-CCEEEEEE--------cCCCc------cCCCEEE
Confidence 4788888843 4555542 2111 111 1111123456777777 67888886 33321 1235567
Q ss_pred EEeCC
Q 016234 337 IIVGD 341 (393)
Q Consensus 337 i~v~~ 341 (393)
|.|.+
T Consensus 84 V~Vg~ 88 (116)
T TIGR02375 84 IQVGD 88 (116)
T ss_pred EEECC
Confidence 77876
No 207
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=23.80 E-value=1.3e+02 Score=28.14 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=33.7
Q ss_pred ccccccHHHHHHHHHHHH----hCCCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHh
Q 016234 166 FDMRKKLPFCVGLLLRLL----KKNHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVN 224 (393)
Q Consensus 166 ~~l~~~l~~av~fI~~~l----~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr 224 (393)
..+...+..++.|+++.+ .+|+.|+|+|.+.. .=+++|+..|.+.++.....-
T Consensus 132 EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~~~~ 188 (214)
T KOG0235|consen 132 ESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKELNL 188 (214)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhheec
Confidence 344445666666666554 45889999998633 334666667887776555443
No 208
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=23.52 E-value=69 Score=31.17 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=12.3
Q ss_pred HhCCCeEEEEcCCCC
Q 016234 183 LKKNHRVFVTCTTGL 197 (393)
Q Consensus 183 l~~g~~VLVHC~aGi 197 (393)
+...+.|.++|..|+
T Consensus 231 i~~~~~vI~yCgsG~ 245 (285)
T COG2897 231 IDPDKEVIVYCGSGV 245 (285)
T ss_pred CCCCCCEEEEcCCch
Confidence 455789999998886
No 209
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=23.24 E-value=2.4e+02 Score=23.48 Aligned_cols=50 Identities=26% Similarity=0.574 Sum_probs=28.6
Q ss_pred CccceeeeeC-CCCceEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEE
Q 016234 257 THAVTFVWNG-QEGEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYK 310 (393)
Q Consensus 257 ~~~v~f~w~~-~~~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~Yk 310 (393)
--.|+|+|+. ..+..|...+. . .|+.. .+.-..+..|+.++. .||.|.|.
T Consensus 49 GdTVtw~~~~d~~~HnV~s~~~-~-~f~s~-~~~~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 49 GTTVVWEWTGEGGGHNVVSDGD-G-DLDES-ERVSEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEECCCCCCEEEEECCC-C-Ccccc-ccccCCCCEEEEEec-CCcEEEEE
Confidence 3478888873 24566664421 1 24321 111123557888886 78999886
No 210
>PLN00115 pollen allergen group 3; Provisional
Probab=23.06 E-value=1.9e+02 Score=24.33 Aligned_cols=47 Identities=13% Similarity=0.369 Sum_probs=32.7
Q ss_pred CceEEEEeecCCCCcccccccccCCCcEEEEEE-cCCceEEEEEEEc-Cee
Q 016234 269 GEDVLLVGDFTGNWKDPIKATHKGGSRYEVEIR-LTQGKYYYKYIVN-GQW 317 (393)
Q Consensus 269 ~~~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~-L~~G~y~YkF~VD-G~w 317 (393)
-.+|.|.++=..+|.. +|.+.-+..|.+.-. .+.|-+.+||... |.+
T Consensus 47 I~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~ 95 (118)
T PLN00115 47 ISEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGY 95 (118)
T ss_pred EEEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCE
Confidence 5788888863325741 687666889997654 3457899999886 654
No 211
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=23.01 E-value=4.2e+02 Score=25.33 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=37.2
Q ss_pred ccccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHH--HHHHHHHcCC-------CHHHHHHHHhh
Q 016234 168 MRKKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASV--IAYLHWMTDT-------SLHAAYNFVNG 225 (393)
Q Consensus 168 l~~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv--~aYLm~~~g~-------sl~eA~~~vr~ 225 (393)
+...+..+..+|-+..+.+-.|+| -|.||-++++ ++.|+...|+ ....+++..+.
T Consensus 73 ~~~~I~~ay~~l~~~~~~gd~I~l---fGFSRGA~~AR~~a~~i~~~Gll~~~~~~~~~~~~~~~~~ 136 (277)
T PF09994_consen 73 IEARIRDAYRFLSKNYEPGDRIYL---FGFSRGAYTARAFANMIDKIGLLKPDNEERVPQAYKAYQR 136 (277)
T ss_pred hHHHHHHHHHHHHhccCCcceEEE---EecCccHHHHHHHHHHHhhcCCcCcchhHHHHHHHHHHHh
Confidence 345677888888777777778874 4999987765 4455555565 34566666655
No 212
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=22.87 E-value=1.6e+02 Score=26.54 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHH
Q 016234 170 KKLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPAS 203 (393)
Q Consensus 170 ~~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tl 203 (393)
+.+.++++.|.+++.+|++|++. |.|.|+.+
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~ 58 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSC---GNGGSHCD 58 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHH
Confidence 56899999999999999999875 66666443
No 213
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.77 E-value=1.9e+02 Score=26.75 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHc
Q 016234 172 LPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMT 212 (393)
Q Consensus 172 l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~ 212 (393)
|.++++.|-+ ..|+|+|- |+|||+-++=++-|...
T Consensus 28 ~~~a~~~i~~---~~gkv~V~---G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 28 FVRAVELILE---CKGKVFVT---GVGKSGLIGKKFAARLA 62 (202)
T ss_pred HHHHHHHHHh---cCCcEEEE---cCChhHHHHHHHHHHHH
Confidence 4445544444 36789885 99999988877766643
No 214
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=22.61 E-value=4.3e+02 Score=25.81 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=50.5
Q ss_pred HHHHhC-CCceEEecCCCCCccccCCChhhhhhHhhhCCeEE-EEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEE
Q 016234 115 ETLSKA-GITAVLNFQSGTEAENWGIDYKSINESCQKFNLLM-INYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVT 192 (393)
Q Consensus 115 ~~L~~~-GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y-~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVH 192 (393)
..|++. ++...|-.+.... ....+..+..+|.. +.+.+.+ +..++...+..++.-+.+.+++.++=+||
T Consensus 21 ~~l~~~~~~~~~~~~tg~h~--------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~ 91 (365)
T TIGR00236 21 RALKKYPEIDSYVIVTAQHR--------EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVL 91 (365)
T ss_pred HHHhhCCCCCEEEEEeCCCH--------HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 344443 6666666655432 23455555667653 3444444 34555556666666677777665555666
Q ss_pred cCCCCChhHHHHHHHHHHHcCCC
Q 016234 193 CTTGLNRSPASVIAYLHWMTDTS 215 (393)
Q Consensus 193 C~aGisRS~tlv~aYLm~~~g~s 215 (393)
|. | .|..+++++......|..
T Consensus 92 ~~-g-d~~~~la~a~aa~~~~ip 112 (365)
T TIGR00236 92 VQ-G-DTTTTLAGALAAFYLQIP 112 (365)
T ss_pred Ee-C-CchHHHHHHHHHHHhCCC
Confidence 66 3 466566666555555544
No 215
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=22.36 E-value=2.2e+02 Score=24.09 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=29.9
Q ss_pred eEEEEEeccCCCCcc-ccccHHHHHHHHHHHHhCCC--eEEEEcCCCCCh-hHHHHHHHHHHHcC
Q 016234 153 LLMINYPIRDSDSFD-MRKKLPFCVGLLLRLLKKNH--RVFVTCTTGLNR-SPASVIAYLHWMTD 213 (393)
Q Consensus 153 i~y~~ipi~D~~~~~-l~~~l~~av~fI~~~l~~g~--~VLVHC~aGisR-S~tlv~aYLm~~~g 213 (393)
|.-+.+|++|..++. ....+..+.+.|.+..++++ ++++ |-+| || +=++.++|.+..+|
T Consensus 54 i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~-~iaG-GRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 54 VHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIV-NISG-GRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEE-EecC-CHHHHHHHHHHHHHHhC
Confidence 444455677755433 22333334444444444444 3444 5566 44 55566667666655
No 216
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=22.32 E-value=2.2e+02 Score=22.52 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=12.8
Q ss_pred ccceeeeeCCCCceEEEEe
Q 016234 258 HAVTFVWNGQEGEDVLLVG 276 (393)
Q Consensus 258 ~~v~f~w~~~~~~~V~l~G 276 (393)
-.|+|.|.+....+|.+.-
T Consensus 25 ~tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 25 DTVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEEESSSSBEEEEET
T ss_pred CEEEEEECCCCCceEEEec
Confidence 3678888755566666664
No 217
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.23 E-value=3.3e+02 Score=25.22 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=46.0
Q ss_pred HHHHHhCCCceEEecCCCCCccccCCCh---hhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEE
Q 016234 114 VETLSKAGITAVLNFQSGTEAENWGIDY---KSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVF 190 (393)
Q Consensus 114 ~~~L~~~GIt~Vvnl~~~~~~~~~~~~~---~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VL 190 (393)
++.+++.|++..+++..-... ..+. ....+.+.+.|...+.+. |....-....+.+.++.+.+.... -++-
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~-~~~~ 194 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGC---KTDPEYVLEVAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPD-VPLG 194 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC-CeEE
Confidence 356688899999998543320 0122 234445556787766644 433222223344555555544332 5778
Q ss_pred EEcCCCCChhHHHHHH
Q 016234 191 VTCTTGLNRSPASVIA 206 (393)
Q Consensus 191 VHC~aGisRS~tlv~a 206 (393)
+||+.-.|=+.+-+++
T Consensus 195 ~H~Hn~~gla~an~la 210 (265)
T cd03174 195 LHTHNTLGLAVANSLA 210 (265)
T ss_pred EEeCCCCChHHHHHHH
Confidence 8887555444333333
No 218
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=22.07 E-value=1.6e+02 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred cccceeeeeccCceeeccccccccCCCCCceeccCCCccCCCCCC
Q 016234 21 PQGRKLLDCQNGHTQLLSRKNVLSQPMNHLVCVFSEEESGDGEWA 65 (393)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 65 (393)
+.-+|++..++|...|+.. .+.++++|.+.-+++.+|.+.
T Consensus 67 ~~eYKfv~~~~~~v~WE~~-----~~~~nr~~~~~~~~~~~~~~~ 106 (112)
T cd05806 67 TFWYKFLKREAGALIWEGN-----GPHHDRCCVYDSSNLVDGVYC 106 (112)
T ss_pred eEEEEEEEeCCCeeEEecC-----CCCCCeEEeccccccccceEE
Confidence 6778899888888888877 789999999998888888754
No 219
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.86 E-value=3.4e+02 Score=23.96 Aligned_cols=53 Identities=8% Similarity=0.209 Sum_probs=29.1
Q ss_pred hhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEcCCC
Q 016234 142 KSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTG 196 (393)
Q Consensus 142 ~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC~aG 196 (393)
....+.+++.|+.++..-+.-.+-.. .--.++++.+...+..|.-||.|+..+
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~D~~~--~~~~~i~~~~~~~~~~g~Iil~Hd~~~ 162 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSRDWKN--PGVESIVDRVVKNTKPGDIILLHASDS 162 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCCccCC--CCHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 34566677778777665553211111 112344444445556677889999443
No 220
>PRK10785 maltodextrin glucosidase; Provisional
Probab=21.70 E-value=2e+02 Score=30.95 Aligned_cols=58 Identities=10% Similarity=0.164 Sum_probs=36.8
Q ss_pred ccceeeee---CCCCceEEEEeecCCCCcccccccccCC----CcEEEEEEcC--CceEEEEEEE--cCe
Q 016234 258 HAVTFVWN---GQEGEDVLLVGDFTGNWKDPIKATHKGG----SRYEVEIRLT--QGKYYYKYIV--NGQ 316 (393)
Q Consensus 258 ~~v~f~w~---~~~~~~V~l~GsF~~~W~~~~~m~~~~~----g~~~~~~~L~--~G~y~YkF~V--DG~ 316 (393)
..++|+.. +...+.|.|.=..+ +-....+|.+... ..|++++.++ .+.+.|.|.+ +|+
T Consensus 19 ~~~~~~lr~~~~~~~~~v~l~~~~~-~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 19 DQLLITLWLTGEDPPQRVMLRCEPD-NEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEcC-CCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 35555554 22367888876555 4334567765532 2589999885 7788888888 554
No 221
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=21.61 E-value=1.7e+02 Score=27.30 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHcCCCHHHHHHHHhh
Q 016234 186 NHRVFVTCTTGLNRSPASVIAYLHWMTDTSLHAAYNFVNG 225 (393)
Q Consensus 186 g~~VLVHC~aGisRS~tlv~aYLm~~~g~sl~eA~~~vr~ 225 (393)
+|+|+|||..= +...+++-+||....|+-++++.+++.
T Consensus 185 NGriWV~ae~~--~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 185 NGRIWVKAETL--SDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred CceEEEeccCc--chHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 68999999864 555677779999999999999877663
No 222
>PLN02444 HMP-P synthase
Probab=21.54 E-value=1.9e+02 Score=30.84 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=60.5
Q ss_pred HhCCCceEEecCCCCCccccCCChhhhhhHhhh-CCeEEEEEeccC------CCCccccccHHHHHHHHHHHHhCC-CeE
Q 016234 118 SKAGITAVLNFQSGTEAENWGIDYKSINESCQK-FNLLMINYPIRD------SDSFDMRKKLPFCVGLLLRLLKKN-HRV 189 (393)
Q Consensus 118 ~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~-~gi~y~~ipi~D------~~~~~l~~~l~~av~fI~~~l~~g-~~V 189 (393)
.+.|-.+|.+|....+.. .+++..-+ ..+-.=.+|+.+ ....++ -.+...+.|+++.++| .-+
T Consensus 247 ~~~GADTvMDLSTGgdi~-------~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~l--t~d~~~d~ieeQaeqGVDfm 317 (642)
T PLN02444 247 TMWGADTVMDLSTGRHIH-------ETREWILRNSPVPVGTVPIYQALEKVDGIAENL--TWEVFRETLIEQAEQGVDYF 317 (642)
T ss_pred HHcCCCeEeeccCCCCHH-------HHHHHHHHcCCCCccCccHHHHHHHhcCChhhC--CHHHHHHHHHHHHHhCCCEE
Confidence 367999999999887633 23332222 223333344432 111222 2455667777777776 356
Q ss_pred EEEcCC-------------C-CChhHHHHHHHHHHHcCCC-----HHHHHHHHhh
Q 016234 190 FVTCTT-------------G-LNRSPASVIAYLHWMTDTS-----LHAAYNFVNG 225 (393)
Q Consensus 190 LVHC~a-------------G-isRS~tlv~aYLm~~~g~s-----l~eA~~~vr~ 225 (393)
-|||.- | +||-|++.++|++....-+ +++-++.+++
T Consensus 318 TIH~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~ 372 (642)
T PLN02444 318 TIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQ 372 (642)
T ss_pred EEChhhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 789851 2 3999999999999876543 5666666664
No 223
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=21.52 E-value=2.3e+02 Score=30.24 Aligned_cols=99 Identities=11% Similarity=0.175 Sum_probs=60.1
Q ss_pred HhCCCceEEecCCCCCccccCCChhhhhhHhhh-CCeEEEEEeccC------CCCccccccHHHHHHHHHHHHhCC-CeE
Q 016234 118 SKAGITAVLNFQSGTEAENWGIDYKSINESCQK-FNLLMINYPIRD------SDSFDMRKKLPFCVGLLLRLLKKN-HRV 189 (393)
Q Consensus 118 ~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~-~gi~y~~ipi~D------~~~~~l~~~l~~av~fI~~~l~~g-~~V 189 (393)
.+.|-.+|.+|....+.. .+++..-. ..+-.=.+|+.. ....++ ..+...+.|+++.++| .-+
T Consensus 242 ~~~GADtvMDLSTGgdi~-------~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~l--t~e~~~d~ieeQAeqGVDf~ 312 (607)
T PRK09284 242 TRWGADTVMDLSTGKNIH-------ETREWILRNSPVPIGTVPIYQALEKVNGVAEDL--TWEIFRDTLIEQAEQGVDYF 312 (607)
T ss_pred HHcCCCEEEecCCCCCHH-------HHHHHHHHcCCCCccCccHHHHHHHhcCChhhC--CHHHHHHHHHHHHHhCCCEE
Confidence 367999999999987633 23332222 223333344422 111222 2455666677776666 345
Q ss_pred EEEcC-------------CC-CChhHHHHHHHHHHHcCCC-----HHHHHHHHhh
Q 016234 190 FVTCT-------------TG-LNRSPASVIAYLHWMTDTS-----LHAAYNFVNG 225 (393)
Q Consensus 190 LVHC~-------------aG-isRS~tlv~aYLm~~~g~s-----l~eA~~~vr~ 225 (393)
-|||. .| +||-++++++|++....-+ +++-++.+++
T Consensus 313 TIHaGv~~~~v~~~~~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~ 367 (607)
T PRK09284 313 TIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAA 367 (607)
T ss_pred EEChhhHHHHHHHHhCcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 78885 22 4999999999999887543 5666666664
No 224
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=21.33 E-value=3e+02 Score=25.48 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEcCCCCChhHHHHHHHHHHHcCC---------CHHHHHHHHhhc
Q 016234 171 KLPFCVGLLLRLLKKNHRVFVTCTTGLNRSPASVIAYLHWMTDT---------SLHAAYNFVNGL 226 (393)
Q Consensus 171 ~l~~av~fI~~~l~~g~~VLVHC~aGisRS~tlv~aYLm~~~g~---------sl~eA~~~vr~~ 226 (393)
.++.+.++|....++|.++.+....+ +||..-.+..|....|. |..-+..+++++
T Consensus 15 ~~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~ 78 (236)
T TIGR01460 15 PIPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQR 78 (236)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHh
Confidence 36678899999988888888876655 79988999999886664 234456666654
No 225
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=21.33 E-value=94 Score=30.02 Aligned_cols=26 Identities=35% Similarity=0.314 Sum_probs=20.0
Q ss_pred CCCChhHHHHHHHHHHHcCCCHHHHHHH
Q 016234 195 TGLNRSPASVIAYLHWMTDTSLHAAYNF 222 (393)
Q Consensus 195 aGisRS~tlv~aYLm~~~g~sl~eA~~~ 222 (393)
=|+|||++.+.+-|.. |.+-++|.++
T Consensus 165 PG~SRSGaTI~~~lll--G~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLLL--GLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 4899999988887764 7777777554
No 226
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=21.25 E-value=2.9e+02 Score=24.21 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=27.9
Q ss_pred eEEEEeecCCCCcccccccccCCCcEEEEEEcCCceEEEEEEEcCe--eecCCCCC
Q 016234 271 DVLLVGDFTGNWKDPIKATHKGGSRYEVEIRLTQGKYYYKYIVNGQ--WRHSTISP 324 (393)
Q Consensus 271 ~V~l~GsF~~~W~~~~~m~~~~~g~~~~~~~L~~G~y~YkF~VDG~--w~~d~~~p 324 (393)
.+.+.|.+. .|+. -.++..+....++++. ..+||+.+||+ +-.|..+.
T Consensus 99 ~~~~~G~~~-~~~~-g~~k~g~~~~~~~~~~----v~yyk~~idG~~~~eiD~~n~ 148 (167)
T PF04985_consen 99 VAVIRGRIK-SVDP-GEWKPGEKTETSIEFS----VTYYKLEIDGKEIIEIDKLNN 148 (167)
T ss_pred EEEEEEEEE-eeCC-cccCcCccccceEEEE----EEEEEEEECCEEEEEEECccC
Confidence 467778887 5654 2222222223344433 67999999997 66665443
No 227
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.16 E-value=1.3e+02 Score=23.08 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=10.7
Q ss_pred eEEEEcCCCCChh
Q 016234 188 RVFVTCTTGLNRS 200 (393)
Q Consensus 188 ~VLVHC~aGisRS 200 (393)
+|++-|.+|+|=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 6899999999644
No 228
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=21.09 E-value=2.2e+02 Score=22.71 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=32.3
Q ss_pred cceeeeeCCCCceEEEEeecCCCCccc---ccccccCCCcEEEEEEcCCceEEEEEEE
Q 016234 259 AVTFVWNGQEGEDVLLVGDFTGNWKDP---IKATHKGGSRYEVEIRLTQGKYYYKYIV 313 (393)
Q Consensus 259 ~v~f~w~~~~~~~V~l~GsF~~~W~~~---~~m~~~~~g~~~~~~~L~~G~y~YkF~V 313 (393)
.+.++|.+++.+.+...-. =... ..+...+.|.|..+|..-.-+-++++-|
T Consensus 30 ~~~i~w~~P~n~~~~~~~~----~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 30 AFKVEWRGPGNKSKQILNQ----DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred CccEEEeCCCCccceeccC----CccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 4678999877776643321 1122 2345567899999998776666666544
No 229
>PF05986 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR010294 This domain represents the Spacer-1 domain from the ADAM-TS family of metalloproteinases []. A cellular disintegrin and metalloproteinase (ADAM) is a family of genes with structural homology to the snake venom metalloproteinases and disintegrins []. There is variation amongst members of the family, however, all have a similar domain organisation comprising a preproregion, a reprolysin-type catalytic domain, a disintegrin-like domain, a thrombospondin type-1 (TS) module, a cysteine-rich domain, a spacer domain without cysteine residues, and a COOH-terminal TS module [, ]. They are involved in embryogenesis and have been implicated in some cancers and inflammatory diseases [].; GO: 0004222 metalloendopeptidase activity, 0031012 extracellular matrix
Probab=20.89 E-value=2.2e+02 Score=23.46 Aligned_cols=15 Identities=40% Similarity=0.747 Sum_probs=11.1
Q ss_pred EEEEcCeeecCCCCC
Q 016234 310 KYIVNGQWRHSTISP 324 (393)
Q Consensus 310 kF~VDG~w~~d~~~p 324 (393)
+|+++|.|..++...
T Consensus 49 ~y~lNg~~~i~~~~~ 63 (114)
T PF05986_consen 49 KYVLNGNWVISWPGT 63 (114)
T ss_pred cEEEcCCccccCCcC
Confidence 588888888876544
No 230
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=20.53 E-value=1.3e+02 Score=32.47 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=31.3
Q ss_pred HhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 016234 147 SCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFVTCTTGL 197 (393)
Q Consensus 147 ~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLVHC~aGi 197 (393)
++++.|+.|+. |++.++ +++.+..++.+..-.++|+||+..=.
T Consensus 238 lFeelGf~YiG-PiDGHn-------i~~Li~~Lk~~kd~~gPvllHv~T~K 280 (627)
T COG1154 238 LFEELGFNYIG-PIDGHN-------LEELIPTLKNAKDLKGPVLLHVVTKK 280 (627)
T ss_pred hHHHhCCeeEC-CcCCCC-------HHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 67778888876 665444 56667777777777899999987433
No 231
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=20.48 E-value=91 Score=28.56 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 016234 203 SVIAYLHWMTDTSLHAAYNFVNGL 226 (393)
Q Consensus 203 lv~aYLm~~~g~sl~eA~~~vr~~ 226 (393)
-+=+.||..+|+|-++||+++|..
T Consensus 149 rAKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 149 RAKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345679999999999999999964
No 232
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=20.37 E-value=71 Score=35.12 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=27.1
Q ss_pred CceEEEEeecCCCCcccccccccCC-CcEEEEEEcCCceEEEEEEEcCee
Q 016234 269 GEDVLLVGDFTGNWKDPIKATHKGG-SRYEVEIRLTQGKYYYKYIVNGQW 317 (393)
Q Consensus 269 ~~~V~l~GsF~~~W~~~~~m~~~~~-g~~~~~~~L~~G~y~YkF~VDG~w 317 (393)
-..+.|.|+|| .+...-++..-.+ |.-..-+.+.++.=.|-|+-+|+|
T Consensus 674 d~~~viLGD~N-~y~~edpI~~l~~aGy~~l~~~~~~~~~~YSY~f~G~~ 722 (798)
T COG2374 674 DADIVILGDFN-DYAFEDPIQALEGAGYMNLAARFHDAGDRYSYVFNGQS 722 (798)
T ss_pred CCCEEEEeccc-hhhhccHHHHHhhcCchhhhhhccCCCCceEEEECCcc
Confidence 45689999999 5544344433333 444445556655444555556664
No 233
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.27 E-value=1.3e+02 Score=33.15 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=30.8
Q ss_pred hHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCC--CeEEEEcCCCCCh
Q 016234 146 ESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKN--HRVFVTCTTGLNR 199 (393)
Q Consensus 146 ~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g--~~VLVHC~aGisR 199 (393)
.++++.|+.|+. |++.++ +++.++.++.+.+.+ ++|+||-..-.|+
T Consensus 320 ~lFe~lG~~Y~G-pvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYIG-PVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEEC-ccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 356778888887 665554 455556666665554 8999998754444
No 234
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=20.14 E-value=1.9e+02 Score=23.95 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred ccHHHHHhCCCceEEecCCCCCccccCCChhhhhhHhhhCCeEEEEEeccCCCCccccccHHHHHHHHHHHHhCCCeEEE
Q 016234 112 ADVETLSKAGITAVLNFQSGTEAENWGIDYKSINESCQKFNLLMINYPIRDSDSFDMRKKLPFCVGLLLRLLKKNHRVFV 191 (393)
Q Consensus 112 ~d~~~L~~~GIt~Vvnl~~~~~~~~~~~~~~~~~~~~~~~gi~y~~ipi~D~~~~~l~~~l~~av~fI~~~l~~g~~VLV 191 (393)
-|++.|.+.+|+.|+......+. .. .-+.|-.++.... .+.+-+.++++.+......+++++|
T Consensus 44 vdFE~L~~~~i~~viv~G~Ra~D---------ma-----lRLkyAGv~~~~i---~v~~d~~~a~~~~~~~~~~~~~~yi 106 (113)
T PF08353_consen 44 VDFEKLADPNIKQVIVSGTRAED---------MA-----LRLKYAGVDEEKI---IVEEDLEEALDAFLIKSDPTDKVYI 106 (113)
T ss_pred cCHHHHhcCCCCEEEEEeeeHHH---------HH-----hHeeecCcchHHe---EecCCHHHHHHHHHHhcCCCCcEEE
Confidence 47889998899999986554321 11 1223333332111 1123456666664444455677877
Q ss_pred EcC
Q 016234 192 TCT 194 (393)
Q Consensus 192 HC~ 194 (393)
-|+
T Consensus 107 l~t 109 (113)
T PF08353_consen 107 LAT 109 (113)
T ss_pred EEC
Confidence 653
Done!