Query 016235
Match_columns 393
No_of_seqs 237 out of 1107
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:02:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00171 photosystem light-ha 100.0 1.3E-95 3E-100 715.5 26.0 317 18-336 6-323 (324)
2 PLN00025 photosystem II light 100.0 9E-67 2E-71 501.6 17.1 218 112-339 42-259 (262)
3 PLN00187 photosystem II light- 100.0 1.7E-62 3.6E-67 476.4 14.8 202 110-336 41-285 (286)
4 PLN00098 light-harvesting comp 100.0 9.2E-61 2E-65 461.0 16.7 204 113-337 54-266 (267)
5 PLN00097 photosystem I light h 100.0 7.6E-60 1.6E-64 449.6 16.2 195 117-332 40-243 (244)
6 PLN00048 photosystem I light h 100.0 6.1E-60 1.3E-64 454.7 15.2 211 113-337 34-261 (262)
7 PLN00147 light-harvesting comp 100.0 3.9E-59 8.4E-64 446.9 18.5 206 112-337 36-251 (252)
8 PLN00101 Photosystem I light-h 100.0 9.3E-60 2E-64 450.5 14.2 197 113-335 45-249 (250)
9 PLN00099 light-harvesting comp 100.0 1.3E-57 2.9E-62 434.5 16.2 194 119-336 42-237 (243)
10 PLN00100 light-harvesting comp 100.0 1.7E-55 3.8E-60 419.7 13.4 178 118-335 32-209 (246)
11 PLN00170 photosystem II light- 100.0 6.5E-49 1.4E-53 376.5 15.1 179 119-320 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 1.5E-40 3.2E-45 295.2 12.9 153 132-309 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 6.8E-40 1.5E-44 307.2 13.9 158 132-317 46-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 1.8E-33 4E-38 262.7 12.2 147 146-317 47-199 (202)
15 PLN00098 light-harvesting comp 99.7 2.9E-18 6.2E-23 166.5 6.9 112 262-373 76-237 (267)
16 PLN00171 photosystem light-ha 99.6 1.8E-16 3.9E-21 157.1 7.2 54 262-315 124-177 (324)
17 PLN00147 light-harvesting comp 99.6 1.8E-16 3.8E-21 153.0 6.8 53 262-314 59-111 (252)
18 PLN00170 photosystem II light- 99.6 1E-15 2.3E-20 147.8 7.5 53 262-314 71-123 (255)
19 PLN00099 light-harvesting comp 99.6 1E-15 2.2E-20 147.2 6.2 112 262-374 58-209 (243)
20 PLN00187 photosystem II light- 99.6 1.1E-15 2.3E-20 149.8 6.5 112 263-374 67-258 (286)
21 PLN00097 photosystem I light h 99.6 9.9E-16 2.1E-20 147.2 6.0 53 263-315 59-111 (244)
22 PLN00048 photosystem I light h 99.6 1.2E-15 2.6E-20 148.0 5.7 112 262-374 56-233 (262)
23 PLN00025 photosystem II light 99.6 2.1E-15 4.5E-20 146.3 6.9 113 262-374 67-229 (262)
24 PLN00101 Photosystem I light-h 99.5 4.4E-15 9.5E-20 143.2 5.7 55 262-316 67-121 (250)
25 PLN00089 fucoxanthin-chlorophy 99.5 8.9E-15 1.9E-19 138.0 7.4 109 266-374 54-200 (209)
26 PLN00100 light-harvesting comp 99.5 8.7E-15 1.9E-19 140.8 6.2 112 262-373 49-182 (246)
27 PF00504 Chloroa_b-bind: Chlor 99.5 7.8E-14 1.7E-18 124.2 6.6 49 264-313 8-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.3 5.1E-13 1.1E-17 125.5 3.9 44 265-309 42-87 (202)
29 PHA02337 putative high light i 97.9 1.2E-05 2.5E-10 56.7 3.0 28 288-315 4-31 (35)
30 PLN00084 photosystem II subuni 97.7 3E-05 6.6E-10 71.9 3.1 46 282-327 131-177 (214)
31 PLN00014 light-harvesting-like 97.3 0.00017 3.6E-09 69.7 2.8 36 286-321 159-194 (250)
32 PHA02337 putative high light i 97.0 0.00065 1.4E-08 48.0 2.7 27 162-188 3-29 (35)
33 PLN00014 light-harvesting-like 95.2 0.0077 1.7E-07 58.5 1.2 30 162-191 160-189 (250)
34 PLN00084 photosystem II subuni 91.5 0.11 2.4E-06 48.7 2.1 35 157-191 131-166 (214)
35 PLN02449 ferrochelatase 43.1 16 0.00034 39.5 2.2 22 296-317 463-484 (485)
36 PF14672 LCE: Late cornified e 20.2 47 0.001 27.9 0.8 10 18-27 23-32 (83)
No 1
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.3e-95 Score=715.52 Aligned_cols=317 Identities=81% Similarity=1.348 Sum_probs=294.9
Q ss_pred ccccCC-CCCcchhHHHhcCccccccccCCCCcchhhhhHhhhhhheeeeccchhhHHHhhcChhhHHHHHhHHHhHHHh
Q 016235 18 SCCSSS-SGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAA 96 (393)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~g~~~~~~~~~~~~~~ 96 (393)
||-+|| ++.-++++++++++|++.. +++.+++|||||||+|||+||||+|||++|+||||+||++||+|++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (324)
T PLN00171 6 SSSSSSFSGQHSLPRILASKPRRRRA--TRRPASSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAA 83 (324)
T ss_pred cccccccccccccchhhccccccccc--cCCCCccchhhHHhhhheeeeecccHHHHHHHhcCcHHHHHHHHHHHhhHHH
Confidence 443443 3445789999999999988 7778999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHh
Q 016235 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176 (393)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~ 176 (393)
+++++++++.++++|+.+.||+++|++||||+++++|+||||++|||||||||||++||++++||||+|||||||||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~ 163 (324)
T PLN00171 84 VEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAA 163 (324)
T ss_pred HHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccccccCcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC
Q 016235 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256 (393)
Q Consensus 177 vG~lvpEll~~~G~~~f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G 256 (393)
+|+++||++++.|.+++++|+||++|+..+++..++|+++|+..+++.|.+..++++|+++|+++|++|+.++...++.+
T Consensus 164 ~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g 243 (324)
T PLN00171 164 LGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG 243 (324)
T ss_pred hhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc
Confidence 99999999988888888889999999888888888899888765667788899999999999999999998876555556
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhcc
Q 016235 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (393)
Q Consensus 257 ~~~pGD~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~~ 336 (393)
.+.|||..||||.+|||||+++|+++++++|++|||||||||+||+||++|+.+||+||++||.+|++||+|||+++++.
T Consensus 244 ~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 244 IYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred ccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 67899999999988999999999999999999999999999999999999999999999999999999999999999873
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=9e-67 Score=501.56 Aligned_cols=218 Identities=51% Similarity=0.924 Sum_probs=194.5
Q ss_pred ccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhccccc
Q 016235 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (393)
Q Consensus 112 ~~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~ 191 (393)
+.+.||+++|++||||++.++|+||||++||||||||+||++||++++||||+|||||||||||++|+++||+++..| +
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g-~ 120 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG-V 120 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC-c
Confidence 567899999999999988889999999999999999999999999999999999999999999999999999998766 4
Q ss_pred ccCcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCC
Q 016235 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 271 (393)
Q Consensus 192 ~f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gF 271 (393)
.|.++.||++|...++...++|++.|.+. +.+.+..+.++|+++|+.+|.+|+.+. +.++ ..|..||||+ |
T Consensus 121 ~~~~~~W~~ag~~~~~~gg~~y~~~p~~~--~~~~~~a~~~~qv~lmg~~E~~r~~~~----~~~~--~~d~~yPG~~-F 191 (262)
T PLN00025 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLV--HAQSILAIWACQVVLMGAVEGYRVNGG----PLGE--GLDPLYPGGS-F 191 (262)
T ss_pred CcCcccccccccccccccccccccCcccc--hhhhHHHHHHHHHHHHHHHHHhcccCC----cccc--cccCcCCccc-C
Confidence 67788999999877777788999888643 346667788899999999999998762 2221 2367899997 9
Q ss_pred CCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhcccCC
Q 016235 272 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSMD 339 (393)
Q Consensus 272 DPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~~~~~ 339 (393)
|||||++|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||++++++.+.
T Consensus 192 DPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~~~~ 259 (262)
T PLN00025 192 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYATNFV 259 (262)
T ss_pred CccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999875543
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.7e-62 Score=476.45 Aligned_cols=202 Identities=42% Similarity=0.713 Sum_probs=174.2
Q ss_pred hcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHH--------------------------------
Q 016235 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA-------------------------------- 157 (393)
Q Consensus 110 ~~~~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~-------------------------------- 157 (393)
.+..+.||+++|++|||+. ++|+|||||+|||||||||||++||+.
T Consensus 41 ~~~~~~~~~~~r~~w~p~~--~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
T PLN00187 41 AKKKSSKVGADRPLWFPGA--KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKS 118 (286)
T ss_pred cccCccCCCCCccccCCCC--CCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccc
Confidence 3346789999999999764 699999999999999999999999886
Q ss_pred -----------HHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccCcchhhhccccccCCCcccccCCCcccccchhh
Q 016235 158 -----------FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226 (393)
Q Consensus 158 -----------~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~ 226 (393)
++||||+|||||||||||++||++||++. |. .||++|...+... .+|++.|.. ..
T Consensus 119 ~~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~------~W~~aG~~~~~~g-~~y~g~~~p-----~~ 184 (286)
T PLN00187 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV------TWQDAGKVELVDG-SSYLGQPLP-----FS 184 (286)
T ss_pred cccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC------ccccccccccccc-ccccccccc-----hh
Confidence 69999999999999999999999999973 32 5999987654332 247766531 23
Q ss_pred HHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 016235 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306 (393)
Q Consensus 227 i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~a 306 (393)
+..+.++|+++|+++|++|+.+. ...|..||||++|||||+.+|+++++++|++|||||||||+|++||++
T Consensus 185 ~~~l~~iqvllmG~~E~~R~~~~---------~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~v 255 (286)
T PLN00187 185 ITTLIWIEVLVIGYIEFQRNAEL---------DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAV 255 (286)
T ss_pred HHHHHHHHHHHHHHHHhhhccCC---------CCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55678899999999999997652 123567999988999999999999999999999999999999999999
Q ss_pred hhhccCCCchhhhhhhhcCccccchhhhcc
Q 016235 307 QAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (393)
Q Consensus 307 Qe~VTGkGPlenL~~hlaDP~~~N~~~~~~ 336 (393)
|+++||+||++||.+|++||+||||++++.
T Consensus 256 q~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 256 QAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred HHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 999999999999999999999999999874
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=9.2e-61 Score=461.03 Aligned_cols=204 Identities=38% Similarity=0.705 Sum_probs=173.4
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccc
Q 016235 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (393)
Q Consensus 113 ~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~ 192 (393)
...+|+++|++|+|+. ++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|.
T Consensus 54 ~~~~~~~~r~~w~Pg~--~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-- 129 (267)
T PLN00098 54 VCEPLPPDRPLWFPGS--SPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-- 129 (267)
T ss_pred ccccCCCCccccCCCC--CCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc--
Confidence 4567999999999875 599999999999999999999999999999999999999999999999999999887775
Q ss_pred cCcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC-------ccC-CCCCC
Q 016235 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-------IFL-PGDIN 264 (393)
Q Consensus 193 f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G-------~~~-pGD~~ 264 (393)
+..+.||++|.. +|++.| ..+.++|+++|+++|.+|+.++...+..+ ... .+|..
T Consensus 130 ~~~~~w~~Ag~~-------~~~~~~----------~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~ 192 (267)
T PLN00098 130 IENFSWYDAGAR-------EYFADP----------TTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVG 192 (267)
T ss_pred ccccccccccch-------hhccCc----------hHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCC
Confidence 345679988753 344433 13467899999999999987753221111 011 23668
Q ss_pred CCCCCCCCCCCCCC-ChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhccc
Q 016235 265 YPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 337 (393)
Q Consensus 265 yPGg~gFDPLGLak-dpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~~~ 337 (393)
||||++||||||.+ |+++++++|+||||||||||+|++||++|+.+||+||++||.+||+||+||||+++++.
T Consensus 193 yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 193 YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999999999974 89999999999999999999999999999999999999999999999999999998864
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=7.6e-60 Score=449.59 Aligned_cols=195 Identities=39% Similarity=0.628 Sum_probs=166.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccCcc
Q 016235 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196 (393)
Q Consensus 117 yg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~~p 196 (393)
.+++|++|||+. ++|+||||++||||||||+||++|+++++|||++||+||||||||++|+++||+++..|.. ..+
T Consensus 40 ~~~~R~~w~Pg~--~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~--~~p 115 (244)
T PLN00097 40 AAADRPTWLPGK--AAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA--DLP 115 (244)
T ss_pred cCCCCcccCCCC--CCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc--cCC
Confidence 457899999764 5999999999999999999999999999999999999999999999999999999887753 346
Q ss_pred hhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccC-----CC----CccCCCCCCCCC
Q 016235 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALE-----PL----GIFLPGDINYPG 267 (393)
Q Consensus 197 ~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~-----p~----G~~~pGD~~yPG 267 (393)
.||++|... .|+.. ...+..+|+++|+++|.+|+.++...+ +. ....++|..|||
T Consensus 116 ~W~~Ag~~~------~~~~~----------~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPg 179 (244)
T PLN00097 116 NWIDAAKWD------GYWAG----------AGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPK 179 (244)
T ss_pred ccccCCcch------hcccc----------chhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCC
Confidence 899987431 13221 123567788899999999988764322 11 123467889999
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchh
Q 016235 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 332 (393)
Q Consensus 268 g~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~ 332 (393)
|. ||||||++|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+|||++
T Consensus 180 g~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 180 GL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 95 99999999999999999999999999999999999999999999999999999999999997
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=6.1e-60 Score=454.66 Aligned_cols=211 Identities=42% Similarity=0.678 Sum_probs=175.0
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHH------HHHHHHHHHHhhhhhHHHHhhhhhhhhhhh
Q 016235 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM------AFQKYFNFEILHARWAMLGALGALVPEVLD 186 (393)
Q Consensus 113 ~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe------~~~~yREAELkHGR~AMLA~vG~lvpEll~ 186 (393)
...+|+++|++|+++. +.|+||||++|||||||||||+ |++ +.+|+|++||+||||||||++|+++||+++
T Consensus 34 ~~~~~~~~r~~w~p~~--~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 34 PPAKQGADRQLWFASK--QSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCCCceecCCC--CCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 4578899999999653 6999999999999999999998 443 568999999999999999999999999998
Q ss_pred cccccccC-cchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC--------c
Q 016235 187 MVGAFHLV-EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------I 257 (393)
Q Consensus 187 ~~G~~~f~-~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G--------~ 257 (393)
+.|.+... ...||++|.... ....+|++.| ..+.++|+++|+++|.+|+.++...++.+ .
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p----------~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~ 179 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIPP-AGTYDYWADP----------YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEK 179 (262)
T ss_pred cCCcccccccccccccccccc-ccccccccch----------hHHHHHHHHHhhheeeeccccccCCCcccccccccchh
Confidence 77765332 236999886322 2345676554 23567899999999999988764332211 0
Q ss_pred cC--CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhc
Q 016235 258 FL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (393)
Q Consensus 258 ~~--pGD~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~ 335 (393)
.. .+|..||||++|||||+++|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++++
T Consensus 180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~ 259 (262)
T PLN00048 180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259 (262)
T ss_pred ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccc
Confidence 11 2477899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 016235 336 KS 337 (393)
Q Consensus 336 ~~ 337 (393)
..
T Consensus 260 ~~ 261 (262)
T PLN00048 260 KF 261 (262)
T ss_pred cc
Confidence 53
No 7
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=3.9e-59 Score=446.86 Aligned_cols=206 Identities=41% Similarity=0.717 Sum_probs=171.9
Q ss_pred ccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhccccc
Q 016235 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (393)
Q Consensus 112 ~~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~ 191 (393)
.....++++|++|+|.. ++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|..
T Consensus 36 ~~~~~~~~~R~~wlP~~--~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 36 GINPVVAQERPTWLPGL--DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred cCcccCCCCccccCCCC--CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 33457889999999775 5999999999999999999999999999999999999999999999999999998877753
Q ss_pred ccCcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCC---Ccc-------CCC
Q 016235 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPL---GIF-------LPG 261 (393)
Q Consensus 192 ~f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~---G~~-------~pG 261 (393)
..|.||++|...+. + . ....++++|+++|+.+|.+|+.++...+.. |.+ ..-
T Consensus 114 --~~p~w~~ag~~~~~-----~-~----------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~ 175 (252)
T PLN00147 114 --NLPVWYEAGAVKFE-----F-A----------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGL 175 (252)
T ss_pred --CCcchhhcccchhc-----c-c----------cchHHHHHHHHHHHHHHHHhhccccCCCcccccccccccccccccc
Confidence 34679987643321 1 1 013456889988888999998765432211 000 012
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhccc
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 337 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~~~ 337 (393)
|..||||++||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||+++++.
T Consensus 176 ~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 176 EPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred CCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999854
No 8
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=9.3e-60 Score=450.52 Aligned_cols=197 Identities=40% Similarity=0.779 Sum_probs=168.1
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccc
Q 016235 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (393)
Q Consensus 113 ~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~ 192 (393)
.+.++.++|+.|+|.. +.|+||||++|||+||||+||++|+++++|||++||+||||||||++|+++||+++..|.+
T Consensus 45 ~~~~~~~~r~~W~P~~--~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~- 121 (250)
T PLN00101 45 RSFKVEAKKGEWLPGL--ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII- 121 (250)
T ss_pred ccccccccccccCCCC--CCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc-
Confidence 4567788999999764 5999999999999999999999999999999999999999999999999999999887754
Q ss_pred cCcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC--------ccCCCCCC
Q 016235 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------IFLPGDIN 264 (393)
Q Consensus 193 f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G--------~~~pGD~~ 264 (393)
..|.||++|.. +|+..+ ..+.++|+++|+++|++|+.++...+..+ ...+||..
T Consensus 122 -~~p~w~~ag~~-------~~~~~~----------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~ 183 (250)
T PLN00101 122 -NAPQWYDAGKA-------EYFASS----------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 183 (250)
T ss_pred -CCCccccccch-------hhcccc----------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCcccc
Confidence 34689998753 243322 23567788999999999988765322211 12368899
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhc
Q 016235 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (393)
Q Consensus 265 yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~ 335 (393)
||||. ||||||+++ +++|+||||||||||+||+||++|+++||+||++||.+||+||+||||++++
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhc
Confidence 99995 999999876 3799999999999999999999999999999999999999999999999986
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.3e-57 Score=434.50 Aligned_cols=194 Identities=41% Similarity=0.716 Sum_probs=161.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccCcchh
Q 016235 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198 (393)
Q Consensus 119 ~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~~p~W 198 (393)
++|..|+|.. ++|+||||++|||+||||+||++++++++||||+|||||||||||++|+++||+++. +.|
T Consensus 42 ~~~~~w~P~~--~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~--------~~w 111 (243)
T PLN00099 42 TMSADWMPGQ--PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--------GNW 111 (243)
T ss_pred cccccccCCC--CCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------CCc
Confidence 5567788654 599999999999999999999999999999999999999999999999999998642 257
Q ss_pred hhcccc-ccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 016235 199 WRVGYS-KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (393)
Q Consensus 199 ~~aG~~-~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gFDPLGLa 277 (393)
++++.. .+++...+|++.|.. ...++.++++|+++++.+|.+|+... .+++..|||| .|||||+.
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~~----~~~l~~~~~iqvl~ig~~E~~r~~~~---------~~~~~~yPGd-~FDPlGl~ 177 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPVP----WGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYS 177 (243)
T ss_pred ccccchhccCcchhhhccCccc----hhhHHHHHHHHHHHHHHHHHHhhccC---------CCCCCcCCCC-cCCccccc
Confidence 776532 234444456665521 23456778899988888898875321 1234579999 79999999
Q ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hccCCCchhhhhhhhcCccccchhhhcc
Q 016235 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (393)
Q Consensus 278 kdpe~~~elklKEIKNGRLAMlA~lGf~aQe-~VTGkGPlenL~~hlaDP~~~N~~~~~~ 336 (393)
+|+++++++|+||||||||||+||+||++|+ .+||+||++||.+||+||+|||+++.+.
T Consensus 178 kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~ 237 (243)
T PLN00099 178 KDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 237 (243)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeec
Confidence 9999999999999999999999999999999 6799999999999999999999998873
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=1.7e-55 Score=419.68 Aligned_cols=178 Identities=37% Similarity=0.651 Sum_probs=151.1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccCcch
Q 016235 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197 (393)
Q Consensus 118 g~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~~p~ 197 (393)
..+|++|+|.. +.|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++ + |.
T Consensus 32 ~~~r~~W~P~~--~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~------~--P~ 101 (246)
T PLN00100 32 ARARPMWYPGA--TAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG------L--PK 101 (246)
T ss_pred cCCCcccCCCC--CCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc------c--cc
Confidence 46788888553 59999999999999999999999999999999999999999999999999999853 2 45
Q ss_pred hhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 016235 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (393)
Q Consensus 198 W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gFDPLGLa 277 (393)
||++|... |.. .+..++++|+++|+.+|.+|+.++.. +|+..+||+++|||||++
T Consensus 102 w~~ag~~~-------~~~----------~~~~l~~iqill~g~~E~~r~~~~~~--------~g~~~~pg~~~FDPLGl~ 156 (246)
T PLN00100 102 FWEAGAEK-------YGL----------DLQTLVLIQVVVMAVLEAARYRGFMK--------TGESGVLSFFPFDPTGMD 156 (246)
T ss_pred hhhcchhh-------hcc----------chhHHHHHHHHHHHHHhhhccccccc--------ccccCCCCCCCCCccccc
Confidence 88876432 210 02346788999998899999876421 244557888899999996
Q ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhc
Q 016235 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (393)
Q Consensus 278 kdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~ 335 (393)
+ +++|+||||||||||+||+||++|+++||+||++||.+|++||+|||++++.
T Consensus 157 ~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 157 S-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred H-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 3 5799999999999999999999999999999999999999999999999864
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=6.5e-49 Score=376.49 Aligned_cols=179 Identities=37% Similarity=0.615 Sum_probs=145.9
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccC
Q 016235 119 EERPRWLGPIP----YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (393)
Q Consensus 119 ~~r~~wl~~~~----~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~ 194 (393)
.+|+.|++... ...|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++ |
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g----- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G----- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C-----
Confidence 56667776542 257999999999999999999999999999999999999999999999999999964 2
Q ss_pred cchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCC--------------ccCC
Q 016235 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------------IFLP 260 (393)
Q Consensus 195 ~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G--------------~~~p 260 (393)
..||++|... .++ .| ..+..+..+|+++|+++|.+|+.++...+... ....
T Consensus 122 -~~w~~aG~~~------~~~-~p-------~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~ 186 (255)
T PLN00170 122 -IPWFEAGADP------GAI-AP-------FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANAT 186 (255)
T ss_pred -CChhhCCccc------ccc-Cc-------cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccC
Confidence 2599988642 111 11 12345778899999999999998875422110 0124
Q ss_pred CCCCCCCCCCCCCCCCCC---------ChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhh
Q 016235 261 GDINYPGGALFDPLNLSK---------DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 320 (393)
Q Consensus 261 GD~~yPGg~gFDPLGLak---------dpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~ 320 (393)
||..||||..||||||++ |+++++++|+||||||||||+|++||++|+ .||+||++||.
T Consensus 187 g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 187 GLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred CCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 677899997799999985 789999999999999999999999999999 79999999973
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=1.5e-40 Score=295.23 Aligned_cols=153 Identities=44% Similarity=0.660 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccc-cccC-cchhhhccccccCCC
Q 016235 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA-FHLV-EPVWWRVGYSKLQGE 209 (393)
Q Consensus 132 ~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~-~~f~-~p~W~~aG~~~l~g~ 209 (393)
+|+||||+++||+||||+||++++ +++|||++|||||||||||++|++++|+++..+. ..+. .+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 489999999999999999999887 9999999999999999999999999999754321 1111 122432210
Q ss_pred cccccCCCcccccchhhHHHHHHHHHHHhh-cchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016235 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMV-GPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288 (393)
Q Consensus 210 ~l~ylg~P~l~~ag~q~i~~i~~~Qillm~-g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gFDPLGLakdpe~~~elkl 288 (393)
++ ++..+++|+++++ .+|.++.......+..+ ..+..|||+++|||+|+.+|+++++++|+
T Consensus 74 ------~~---------~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~---~~~~~~pG~~~~dplgl~~~~~~~~~~~~ 135 (156)
T PF00504_consen 74 ------IP---------VPAAGWAQILLFIGALEPWRQQGVPEPGEGG---GKDGRYPGDLGFDPLGLAKDPEEKEFMQL 135 (156)
T ss_dssp ------SS---------SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS---SSSSSSSSSSSSSTSSTSSSCHSHHCHHH
T ss_pred ------hh---------hhhHHHHHHHHHHhHhhhhhcccccCCcccc---cccccCccccccchhhhhhhhhhhHHHHH
Confidence 00 1233455555544 45888766532211111 23457999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhh
Q 016235 289 KEIKNGRLAMVAWLGFYIQAA 309 (393)
Q Consensus 289 KEIKNGRLAMlA~lGf~aQe~ 309 (393)
+|||||||||+||+|+++|+.
T Consensus 136 ~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 136 AELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=6.8e-40 Score=307.22 Aligned_cols=158 Identities=29% Similarity=0.361 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCCCCCcCCCCCC-CHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhccccc-ccCcchhhhccccccCCC
Q 016235 132 YPSYLTGELPGDYGFDVAGLSK-DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF-HLVEPVWWRVGYSKLQGE 209 (393)
Q Consensus 132 ~P~yLdGslPGD~GFDPLGLs~-dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~-~f~~p~W~~aG~~~l~g~ 209 (393)
.|+.|||+ .||+||||+||++ ++++++|||++|||||||||||++|+++||.++.+|.+ .|.
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~--------------- 109 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFA--------------- 109 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcccccc---------------
Confidence 57789999 9999999999985 67889999999999999999999999999997766632 111
Q ss_pred cccccCCCcccccchhhHHHHH-HHHHHHhhc-chhhhcccccccCCCCccCCCCCCCCCCCCCCCCCC-CCChHHHHHH
Q 016235 210 TLDYLGIPGLHLAGSQGVIVIA-ICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEEL 286 (393)
Q Consensus 210 ~l~ylg~P~l~~ag~q~i~~i~-~~Qillm~g-~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gFDPLGL-akdpe~~~el 286 (393)
+.|.. ....+.++..+ ++|++++++ +|....... . .....+ ..||||++|||||+ .+|+++++++
T Consensus 110 -----~~p~~-~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~----~-~~~~~~-~~~PGd~gfdplgl~~~d~~~~~~~ 177 (209)
T PLN00089 110 -----AIPKT-IDAHDALLKSGAMIQIFAWIGFVDLAVSAPA----A-AAAAEF-DRTPGDFGFDLLALYPKDAAKMEKK 177 (209)
T ss_pred -----ccccH-HHHHHhhcccccHHHHHHHHHHHHHHHhhcc----c-cccccC-CCCCCCcCccccccCCCCHHHHHHH
Confidence 11110 00011122222 568877655 474321110 0 001123 35899999999999 4689999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhccCCCchh
Q 016235 287 KVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 317 (393)
Q Consensus 287 klKEIKNGRLAMlA~lGf~aQe~VTGkGPle 317 (393)
|++|||||||||+||+||++|+++||+|+++
T Consensus 178 ~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 178 KDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999998763
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=262.71 Aligned_cols=147 Identities=27% Similarity=0.369 Sum_probs=104.5
Q ss_pred CcCCCCC--CCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccCcchhhhccccccCCCcccccCCCcccccc
Q 016235 146 FDVAGLS--KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223 (393)
Q Consensus 146 FDPLGLs--~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag 223 (393)
|||+||+ +|+++++|||++|||||||||||++|+++||+ | ++|++. ..+.+. .|.++|... ..
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~----g-~~~Pg~-------~~~~g~--~~~~~p~~~-~a 111 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA----G-IRLPGD-------IDYSGT--SFSDIPNGF-AA 111 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc----c-ccCCCc-------cccccc--cccccccch-hh
Confidence 9999997 47899999999999999999999999999997 1 233311 111111 122222211 12
Q ss_pred hhhHHHHHHHHHHHhhcc-hhhhcccccccCCCC-ccCCCCCCCCC--CCCCCCCCCCCChHHHHHHHHHHHhhhHHHHH
Q 016235 224 SQGVIVIAICQALLMVGP-ECARYCGIEALEPLG-IFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 299 (393)
Q Consensus 224 ~q~i~~i~~~Qillm~g~-E~~r~~gi~~~~p~G-~~~pGD~~yPG--g~gFDPLGLakdpe~~~elklKEIKNGRLAMl 299 (393)
.+.++..+++|+++++++ |+.+..+. .| .+.|||.. || |++|||+ |+++++++|+|||||||||||
T Consensus 112 ~~~vp~~g~~qi~~~ig~~E~~~~~~~-----~~~~~~pGd~~-~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMi 181 (202)
T PLN00120 112 LDAIPTAGLLQILAFIGFLELAVMKDI-----TGEGEFVGDFR-NGYIDFGWDSF----DEETKLKKRAIELNQGRAAQM 181 (202)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccc-----ccCCCCCCccC-CCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH
Confidence 344566778999988775 87654432 11 23355431 22 4556665 788999999999999999999
Q ss_pred HHHHHHHhhhccCCCchh
Q 016235 300 AWLGFYIQAAFTGKGPVQ 317 (393)
Q Consensus 300 A~lGf~aQe~VTGkGPle 317 (393)
||+||++|+.++|+.|+-
T Consensus 182 ai~G~~~qe~l~g~~~~~ 199 (202)
T PLN00120 182 GILALMVHEQLGVELPII 199 (202)
T ss_pred HHHHHHHHHHccCCCcCC
Confidence 999999999999998863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.73 E-value=2.9e-18 Score=166.49 Aligned_cols=112 Identities=26% Similarity=0.314 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhh-------hhhhcCccccchhhh
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL-------LDHISDPLHNNLLSM 334 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL-------~~hlaDP~~~N~~~~ 334 (393)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.|++++. .+++.||....++..
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~ 155 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQM 155 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHH
Confidence 3458999999999999999999999999999999999999999999999988776532 234566642211111
Q ss_pred c---------------------------------------ccCCCC----CCChhhhhhcccchhcchhhhHHhhhcccc
Q 016235 335 V---------------------------------------KSMDDP----SGCPLERMRRCQFRCNQTRRSLVLSMLTIT 371 (393)
Q Consensus 335 ~---------------------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (393)
+ ...-|| +..+.++.+-..-|+||+|.+|++.++++.
T Consensus 156 ~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~ 235 (267)
T PLN00098 156 VLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCF 235 (267)
T ss_pred HHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0 000112 224555556667899999999999999987
Q ss_pred cc
Q 016235 372 PK 373 (393)
Q Consensus 372 ~~ 373 (393)
.+
T Consensus 236 q~ 237 (267)
T PLN00098 236 QA 237 (267)
T ss_pred hh
Confidence 65
No 16
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.65 E-value=1.8e-16 Score=157.10 Aligned_cols=54 Identities=39% Similarity=0.454 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGP 315 (393)
|..+|||++||||||++||++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 345799999999999999999999999999999999999999999999886653
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.65 E-value=1.8e-16 Score=153.04 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCC
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkG 314 (393)
|..+|||++||||||++|+++++++|++||||||+||+|++|+++|++++..|
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 45689999999999999999999999999999999999999999999998755
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.60 E-value=1e-15 Score=147.81 Aligned_cols=53 Identities=38% Similarity=0.623 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCC
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkG 314 (393)
|..+|||++||||+|.+||+.++++|.+||+|||+||+|++|+++|+++||..
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 34689999999999999999999999999999999999999999999999863
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.59 E-value=1e-15 Score=147.20 Aligned_cols=112 Identities=24% Similarity=0.240 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch-h---------hhhhhhcCccccch
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV-Q---------NLLDHISDPLHNNL 331 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPl-e---------nL~~hlaDP~~~N~ 331 (393)
|..+|||++||||+|++++++++++|.+||||||+||+|++|+++|++++. +++ + ...+.+.+|+..+.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-~~w~~a~~~~~~~~g~~~~~g~~~~~~~ 136 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-GNWVKAQEWAAIPGGQATYLGNPVPWGT 136 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc-CCcccccchhccCcchhhhccCccchhh
Confidence 456899999999999999999999999999999999999999999999754 221 0 11223344432210
Q ss_pred hhh-----------------cccC----------CCC---CCChhhhhhcccchhcchhhhHHhhhcccccce
Q 016235 332 LSM-----------------VKSM----------DDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTITPKK 374 (393)
Q Consensus 332 ~~~-----------------~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (393)
+.. .... -|| +..+.+..+..--|+||||.+|++.++++..+.
T Consensus 137 l~~~~~iqvl~ig~~E~~r~~~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~ 209 (243)
T PLN00099 137 LPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQS 209 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 000 0000 011 234555566667899999999999999987663
No 20
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.59 E-value=1.1e-15 Score=149.80 Aligned_cols=112 Identities=22% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCCCCCChHH-------------------------------------------HHHHHHHHHhhhHHHHH
Q 016235 263 INYPGGALFDPLNLSKDPVA-------------------------------------------FEELKVKEIKNGRLAMV 299 (393)
Q Consensus 263 ~~yPGg~gFDPLGLakdpe~-------------------------------------------~~elklKEIKNGRLAMl 299 (393)
..+|||++||||||++||+. ++++|..||+|||+||+
T Consensus 67 GslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAML 146 (286)
T PLN00187 67 GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAML 146 (286)
T ss_pred CCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHHH
Confidence 35799999999999999986 59999999999999999
Q ss_pred HHHHHHHhhhccCCCchhh----h---hhhhcCccccchhhh--------------------------c-ccCCCC---C
Q 016235 300 AWLGFYIQAAFTGKGPVQN----L---LDHISDPLHNNLLSM--------------------------V-KSMDDP---S 342 (393)
Q Consensus 300 A~lGf~aQe~VTGkGPlen----L---~~hlaDP~~~N~~~~--------------------------~-~~~~~~---~ 342 (393)
|++|+++||+++|..-.+. + ..++.+|....+.+- - ...-|| +
T Consensus 147 AvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~~~~~~yPGg~~FDPlGl~ 226 (286)
T PLN00187 147 ATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLA 226 (286)
T ss_pred HhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccccC
Confidence 9999999999876411000 0 123344432211000 0 000122 3
Q ss_pred CChhhhhhcccchhcchhhhHHhhhcccccce
Q 016235 343 GCPLERMRRCQFRCNQTRRSLVLSMLTITPKK 374 (393)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (393)
..++++.+-+..||||||.+|++.++++.++.
T Consensus 227 ~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~ 258 (286)
T PLN00187 227 ADPEKKETLQLAEIKHARLAMVAFLGFAVQAA 258 (286)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35666677778899999999999999998764
No 21
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.59 E-value=9.9e-16 Score=147.20 Aligned_cols=53 Identities=30% Similarity=0.375 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 016235 263 INYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (393)
Q Consensus 263 ~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGP 315 (393)
...|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 59 G~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 59 GSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 35799999999999999999999999999999999999999999999998654
No 22
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.58 E-value=1.2e-15 Score=147.99 Aligned_cols=112 Identities=22% Similarity=0.213 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCCCCCCCChH------HHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhh----------------
Q 016235 262 DINYPGGALFDPLNLSKDPV------AFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL---------------- 319 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe------~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL---------------- 319 (393)
|...|||++||||||++ |+ +.+.++.+||||||+||+|++|+++|++++++|.+.+.
T Consensus 56 dG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~ 134 (262)
T PLN00048 56 DGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGT 134 (262)
T ss_pred CCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccc
Confidence 34579999999999974 43 34678899999999999999999999999987766432
Q ss_pred hhhhcCccccchhh----------------------------------------hc-ccCCCC---CCChhhhhhcccch
Q 016235 320 LDHISDPLHNNLLS----------------------------------------MV-KSMDDP---SGCPLERMRRCQFR 355 (393)
Q Consensus 320 ~~hlaDP~~~N~~~----------------------------------------~~-~~~~~~---~~~~~~~~~~~~~~ 355 (393)
.+++++|..-.++. +- ...-|| +..++++.+.+..|
T Consensus 135 ~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~E 214 (262)
T PLN00048 135 YDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKE 214 (262)
T ss_pred cccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHH
Confidence 12233332100000 00 000122 33455677778889
Q ss_pred hcchhhhHHhhhcccccce
Q 016235 356 CNQTRRSLVLSMLTITPKK 374 (393)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (393)
+||||.+|++.++++..+.
T Consensus 215 iknGRLAM~A~~G~~~q~~ 233 (262)
T PLN00048 215 VKNGRLAMLAILGYFIQAL 233 (262)
T ss_pred HhhhHHHHHHhhhHhhhhh
Confidence 9999999999999998874
No 23
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.58 E-value=2.1e-15 Score=146.34 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCc-hh--hh------------hhhhcCc
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP-VQ--NL------------LDHISDP 326 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGP-le--nL------------~~hlaDP 326 (393)
|..+|||++||||||++||++++++|..||||||+||+|++|+++|+++++.|. +. .+ .+.+++|
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p 146 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 146 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCc
Confidence 335789999999999999999999999999999999999999999999986542 11 11 1334444
Q ss_pred c--cc-chhh-------------hcc-------cC---------CCC---CCChhhhhhcccchhcchhhhHHhhhcccc
Q 016235 327 L--HN-NLLS-------------MVK-------SM---------DDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTIT 371 (393)
Q Consensus 327 ~--~~-N~~~-------------~~~-------~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (393)
. |. .+.+ ... .. -|| ...+.++++-.--|+||+|.+|++.++++.
T Consensus 147 ~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~ 226 (262)
T PLN00025 147 SLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 226 (262)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 1 10 0000 000 00 112 334556666777899999999999999988
Q ss_pred cce
Q 016235 372 PKK 374 (393)
Q Consensus 372 ~~~ 374 (393)
.+.
T Consensus 227 q~~ 229 (262)
T PLN00025 227 QAI 229 (262)
T ss_pred hhh
Confidence 763
No 24
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.55 E-value=4.4e-15 Score=143.24 Aligned_cols=55 Identities=35% Similarity=0.572 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPl 316 (393)
|..+|||++||||||++|+++++++|++|||||||||+|++|+++|+++|+.|++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4468999999999999999999999999999999999999999999999998876
No 25
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.54 E-value=8.9e-15 Score=137.96 Aligned_cols=109 Identities=19% Similarity=0.145 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCC-ChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch------hhhh-hhhcCcccc---chh--
Q 016235 266 PGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV------QNLL-DHISDPLHN---NLL-- 332 (393)
Q Consensus 266 PGg~gFDPLGLak-dpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPl------enL~-~hlaDP~~~---N~~-- 332 (393)
.||.+|||||+++ ++++++++|.+||||||+||+|++|+++|+.++.-|.+ .|.. .|-+-|... -++
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ 133 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAW 133 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHH
Confidence 5767899999985 66789999999999999999999999999998754322 1111 111222110 000
Q ss_pred ----h-h----------------cccCCCC----CCChhhhhhcccchhcchhhhHHhhhcccccce
Q 016235 333 ----S-M----------------VKSMDDP----SGCPLERMRRCQFRCNQTRRSLVLSMLTITPKK 374 (393)
Q Consensus 333 ----~-~----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (393)
. . .....|| .+.+.+.++++--|+||||-+|++.++.+..+.
T Consensus 134 ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~ 200 (209)
T PLN00089 134 IGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSA 200 (209)
T ss_pred HHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 0 0 0001122 235666666666799999999999999999883
No 26
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.53 E-value=8.7e-15 Score=140.78 Aligned_cols=112 Identities=19% Similarity=0.103 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhh-hhhhcCcccc---ch--hhhc
Q 016235 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL-LDHISDPLHN---NL--LSMV 335 (393)
Q Consensus 262 D~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL-~~hlaDP~~~---N~--~~~~ 335 (393)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|++++.-+-++.- .+...|+..- .+ +..+
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~ag~~~~~~~~~~l~~iqill~g~~ 128 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKYGLDLQTLVLIQVVVMAVL 128 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcccchhhcchhhhccchhHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999999999997532111100 0000111000 00 0000
Q ss_pred --------cc---C---CCCCCChhh--hhhcccchhcchhhhHHhhhcccccc
Q 016235 336 --------KS---M---DDPSGCPLE--RMRRCQFRCNQTRRSLVLSMLTITPK 373 (393)
Q Consensus 336 --------~~---~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (393)
.. . .+..-+|++ ..+-.--|+|+||-+|++-+|.++.+
T Consensus 129 E~~r~~~~~~~g~~~~pg~~~FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~ 182 (246)
T PLN00100 129 EAARYRGFMKTGESGVLSFFPFDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQY 182 (246)
T ss_pred hhhcccccccccccCCCCCCCCCcccccHHHHHHHHHhhhhHHHHHHHHHhhhh
Confidence 00 0 011123442 23445679999999999999998766
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.46 E-value=7.8e-14 Score=124.17 Aligned_cols=49 Identities=47% Similarity=0.720 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCC
Q 016235 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGK 313 (393)
Q Consensus 264 ~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGk 313 (393)
.++|+++|||+||++|+ ++.++|..||||||+||+|++|+++|++.++.
T Consensus 8 ~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 8 SVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 36788899999999988 89999999999999999999999999999884
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.34 E-value=5.1e-13 Score=125.54 Aligned_cols=44 Identities=43% Similarity=0.784 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCC--CChHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 016235 265 YPGGALFDPLNLS--KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAA 309 (393)
Q Consensus 265 yPGg~gFDPLGLa--kdpe~~~elklKEIKNGRLAMlA~lGf~aQe~ 309 (393)
-|.| .||||||. +|+++++++|.+||||||+||+|++|+++|+.
T Consensus 42 ~p~g-~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 42 APLG-FFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCC-CCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 4555 39999997 47899999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=97.87 E-value=1.2e-05 Score=56.66 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 016235 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (393)
Q Consensus 288 lKEIKNGRLAMlA~lGf~aQe~VTGkGP 315 (393)
..|+-||||||+|+...+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999974
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.66 E-value=3e-05 Score=71.94 Aligned_cols=46 Identities=33% Similarity=0.431 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcc-CCCchhhhhhhhcCcc
Q 016235 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFT-GKGPVQNLLDHISDPL 327 (393)
Q Consensus 282 ~~~elklKEIKNGRLAMlA~lGf~aQe~VT-GkGPlenL~~hlaDP~ 327 (393)
...|.|..|+.||||||+||+--++-|++| |+||++++...-.=|.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 457788899999999999999999999999 9999999876554444
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.27 E-value=0.00017 Score=69.72 Aligned_cols=36 Identities=36% Similarity=0.546 Sum_probs=32.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhh
Q 016235 286 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLD 321 (393)
Q Consensus 286 lklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~ 321 (393)
+...|+-|||+|||||+..++-|++||+|.+.++.+
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 455899999999999999999999999999998854
No 32
>PHA02337 putative high light inducible protein
Probab=96.97 E-value=0.00065 Score=47.96 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHhhhhhHHHHhhhhhhhhhhhcc
Q 016235 162 FNFEILHARWAMLGALGALVPEVLDMV 188 (393)
Q Consensus 162 REAELkHGR~AMLA~vG~lvpEll~~~ 188 (393)
..+|..|||+||+|++-.+..|+++.-
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq 29 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQ 29 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCC
Confidence 369999999999999999999997643
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.23 E-value=0.0077 Score=58.47 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=26.6
Q ss_pred HHHHHhhhhhHHHHhhhhhhhhhhhccccc
Q 016235 162 FNFEILHARWAMLGALGALVPEVLDMVGAF 191 (393)
Q Consensus 162 REAELkHGR~AMLA~vG~lvpEll~~~G~~ 191 (393)
.++|+.|||+||+|++-.++.|+++..|++
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 379999999999999999999998776654
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=91.55 E-value=0.11 Score=48.74 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhhhhhhhhh-ccccc
Q 016235 157 AFQKYFNFEILHARWAMLGALGALVPEVLD-MVGAF 191 (393)
Q Consensus 157 ~~~~yREAELkHGR~AMLA~vG~lvpEll~-~~G~~ 191 (393)
..+..+..|+.+||+||||++-.++.|+++ .-|.+
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 345556789999999999999999999987 65654
No 35
>PLN02449 ferrochelatase
Probab=43.06 E-value=16 Score=39.45 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhccCCCchh
Q 016235 296 LAMVAWLGFYIQAAFTGKGPVQ 317 (393)
Q Consensus 296 LAMlA~lGf~aQe~VTGkGPle 317 (393)
+||+||+.+++-+++||+||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999973
No 36
>PF14672 LCE: Late cornified envelope
Probab=20.23 E-value=47 Score=27.93 Aligned_cols=10 Identities=90% Similarity=1.893 Sum_probs=6.7
Q ss_pred ccccCCCCCc
Q 016235 18 SCCSSSSGGC 27 (393)
Q Consensus 18 ~~~~~~~~~~ 27 (393)
+||.++||||
T Consensus 23 sCC~~ssGgC 32 (83)
T PF14672_consen 23 SCCGSSSGGC 32 (83)
T ss_pred ccccCCCCCc
Confidence 6777666666
Done!