Query 016235
Match_columns 393
No_of_seqs 237 out of 1107
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 9.7E-67 3.3E-71 493.3 19.5 219 110-338 10-228 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.6E-61 5.4E-66 459.5 9.3 195 115-335 5-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 1.1E-58 3.6E-63 446.4 1.0 201 114-336 57-267 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 9.9E-58 3.4E-62 441.0 5.0 208 115-336 50-274 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 3.1E-58 1.1E-62 439.6 0.3 196 114-336 45-249 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 7.2E-54 2.5E-58 407.4 7.5 192 121-336 45-238 (241)
7 2wsc_2 LHCA2, type II chloroph 99.6 5.7E-17 1.9E-21 156.4 -0.1 110 264-373 80-239 (269)
8 2bhw_A Chlorophyll A-B binding 99.6 1.1E-15 3.7E-20 144.7 8.1 111 264-374 39-199 (232)
9 3pl9_A Chlorophyll A-B binding 99.6 3.5E-16 1.2E-20 148.9 0.7 110 263-374 26-216 (243)
10 2wsc_1 AT3G54890, LHCA1; photo 99.6 8.3E-16 2.8E-20 146.3 2.6 109 264-373 61-209 (241)
11 2wsc_4 Chlorophyll A-B binding 99.5 3.4E-16 1.2E-20 149.7 -0.5 53 264-316 69-121 (251)
12 2wsc_3 LHCA3, type II chloroph 99.4 5.9E-15 2E-19 142.8 -2.5 52 264-316 72-129 (276)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=9.7e-67 Score=493.34 Aligned_cols=219 Identities=51% Similarity=0.909 Sum_probs=196.1
Q ss_pred hcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhccc
Q 016235 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (393)
Q Consensus 110 ~~~~~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G 189 (393)
+.+.+.||+++|++||||++.++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++..|
T Consensus 10 ~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 34578999999999999987789999999999999999999999999999999999999999999999999999998877
Q ss_pred ccccCcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCC
Q 016235 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGA 269 (393)
Q Consensus 190 ~~~f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~ 269 (393)
++|+++.||++|...+++..++|+++|.+. +.|.+.+++++|+++|+.+|.+|+.+ ++.++ ..|..||||+
T Consensus 90 -~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~--~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g~--~~d~~~Pg~~ 160 (232)
T 2bhw_A 90 -VKFGEAVWFKAGSQIFSEGGLDYLGNPSLV--HAQSILAIWATQVILMGAVEGYRIAG----GPLGE--VVDPLYPGGS 160 (232)
T ss_dssp -CCCSCCSGGGSGGGGGSTTCEEGGGCTTSE--EECCHHHHHHHHHHHHHHHHHHHHHE----ETTEE--CSSSSCCCTT
T ss_pred -cCCcccccccccchhccccchhcccCcchh--hHHHHHHHHHHHHHHHHHHHHHhhcc----Ccccc--cccccCCCcc
Confidence 578889999999877776678898888643 45777888999999999899998765 12222 2466799996
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhcccC
Q 016235 270 LFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSM 338 (393)
Q Consensus 270 gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~~~~ 338 (393)
|||||+.+|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+|||++++++.+
T Consensus 161 -fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~ 228 (232)
T 2bhw_A 161 -FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 228 (232)
T ss_dssp -SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTT
T ss_pred -cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.6e-61 Score=459.53 Aligned_cols=195 Identities=42% Similarity=0.707 Sum_probs=134.1
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHH--------------------------------------
Q 016235 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM-------------------------------------- 156 (393)
Q Consensus 115 ~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe-------------------------------------- 156 (393)
.|++++|++|+|+. ++|+|||||+|||||||||||++|||
T Consensus 5 ~~~~~~r~~w~pg~--~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYPGA--KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCCC--CCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 57788999999864 59999999999999999999999987
Q ss_pred -----HHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccCcchhhhccccccCCCcccccCCCcccccchhhHHHHH
Q 016235 157 -----AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231 (393)
Q Consensus 157 -----~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~ 231 (393)
+++||||+|||||||||||++|+++||+++ | ..||++|...+.+ .++|++.|.. +.+..++
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g------~~W~~aG~~~~~~-g~~y~g~p~~-----~~i~~l~ 148 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--G------ITWQDAGKVELIE-GSSYLGQPLP-----FSMTTLI 148 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------CCTTTHHHHHHHS-CEEETTEEEC-----CCHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--C------ccccccccccccc-ccccccCccc-----hhhHHHH
Confidence 388999999999999999999999999974 2 2589888765532 4678776642 3466788
Q ss_pred HHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc
Q 016235 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (393)
Q Consensus 232 ~~Qillm~g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VT 311 (393)
++|+++|+.+|.+|+.+. + +.+..||||+ ||||||++|+++++++|++|||||||||+|++|+++|+++|
T Consensus 149 ~~qv~lmG~~E~~R~~~~---~------~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vt 218 (243)
T 3pl9_A 149 WIEVLVIGYIEFQRNAEL---D------TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVT 218 (243)
T ss_dssp HHHHHHHHHHHHHHHSCC---C------TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc---C------CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 999999999999998763 1 2345799997 99999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhcCccccchhhhc
Q 016235 312 GKGPVQNLLDHISDPLHNNLLSMV 335 (393)
Q Consensus 312 GkGPlenL~~hlaDP~~~N~~~~~ 335 (393)
|+||++||.+|++||+|||+++++
T Consensus 219 G~Gpl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 219 GKGPLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp SSCHHHHHHHHHHCSGGGSTTTTT
T ss_pred CCChHHHHHHHhcCcchhhhhhhc
Confidence 999999999999999999999876
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.1e-58 Score=446.36 Aligned_cols=201 Identities=37% Similarity=0.726 Sum_probs=135.5
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhccccccc
Q 016235 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193 (393)
Q Consensus 114 ~~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f 193 (393)
..||+++|++|||+. ++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++..|.+
T Consensus 57 ~~~~~~~r~~wlpg~--~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~-- 132 (269)
T 2wsc_2 57 CTVAEPDRPLWFPGS--TPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL-- 132 (269)
T ss_dssp ---------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS--
T ss_pred ecccCCCcccccCCC--CCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc--
Confidence 358999999999864 5999999999999999999999999999999999999999999999999999999887754
Q ss_pred CcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCc--------cCCCCCCC
Q 016235 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI--------FLPGDINY 265 (393)
Q Consensus 194 ~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~--------~~pGD~~y 265 (393)
..|.||++|.. +|+..+ ..++++|+++|+.+|.+|+.++...+..+. ...+|..|
T Consensus 133 ~~p~w~~aG~~-------~~~~~~----------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~ 195 (269)
T 2wsc_2 133 NTPSWYTAGEQ-------EYFTDT----------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 195 (269)
T ss_dssp SCCCCCSTTSS-------SSCCCT----------TSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSC
T ss_pred cCccccccchh-------hhhcch----------HHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCC
Confidence 35679876542 233322 124577888888889999876543222211 11356789
Q ss_pred CCCCCCCCCCCCC-ChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhh-hhhcCccccchhhhcc
Q 016235 266 PGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL-DHISDPLHNNLLSMVK 336 (393)
Q Consensus 266 PGg~gFDPLGLak-dpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~-~hlaDP~~~N~~~~~~ 336 (393)
|||++||||||.+ ||++++++|++|||||||||+|++|+++|+++||+||++||. +||+|| |||+++++.
T Consensus 196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~ 267 (269)
T 2wsc_2 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFT 267 (269)
T ss_dssp TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSC
T ss_pred CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhcc
Confidence 9999999999985 788899999999999999999999999999999999999999 999999 999999874
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=9.9e-58 Score=440.98 Aligned_cols=208 Identities=42% Similarity=0.740 Sum_probs=117.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHH------HHHHHHHHhhhhhHHHHhhhhhhhhhhhcc
Q 016235 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAF------QKYFNFEILHARWAMLGALGALVPEVLDMV 188 (393)
Q Consensus 115 ~wyg~~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~------~~yREAELkHGR~AMLA~vG~lvpEll~~~ 188 (393)
.+||++|++|||. .++|+||||++||||||||||| +|++++ +|||++|||||||||||++|++++|+++..
T Consensus 50 ~~~g~~R~~wlP~--~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~ 126 (276)
T 2wsc_3 50 VKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSC
T ss_pred cccCCCccccCCC--CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccc
Confidence 3499999999963 4699999999999999999999 588999 999999999999999999999999999887
Q ss_pred cccccCcc-hhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCc----------
Q 016235 189 GAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI---------- 257 (393)
Q Consensus 189 G~~~f~~p-~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~---------- 257 (393)
|.+....+ .|++.|.....| ..+|++.+. .+.++|+++|+.+|.+|+.++...+..+.
T Consensus 127 g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~ 195 (276)
T 2wsc_3 127 GLIPQETALPWFRTGFIPPAG-TYNYWADSY----------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGL 195 (276)
T ss_dssp CCCCCSSCCSSSSCCCC------CCCSCCCC----------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCC
T ss_pred ccccccCcchhhhhhcccchh-HHHHhccch----------HHHHHHHHHHHHHHHhhhcccccCCcccccccccccccc
Confidence 75422234 498876643322 345665542 23567888888899999876543222211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhcc
Q 016235 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (393)
Q Consensus 258 ~~pGD~~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~~ 336 (393)
...+|..||||++||||||.+|+++++++|++|||||||||+|++|+++|+++||+||++||.+|++||+|||+++++.
T Consensus 196 ~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~ 274 (276)
T 2wsc_3 196 GGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLK 274 (276)
T ss_dssp CCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------------------
T ss_pred cccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhcc
Confidence 1234678999988999999998888999999999999999999999999999999999999999999999999999874
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=3.1e-58 Score=439.63 Aligned_cols=196 Identities=41% Similarity=0.757 Sum_probs=129.1
Q ss_pred CccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccc
Q 016235 114 SLWYGE-ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (393)
Q Consensus 114 ~~wyg~-~r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~ 192 (393)
..||++ +|++|+++. ++|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..|.+
T Consensus 45 ~~~~~~~~r~~~~pg~--~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~- 121 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPGL--ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII- 121 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS-
T ss_pred ccccCcchhhhccCCC--CCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc-
Confidence 358999 899999864 5999999999999999999999999999999999999999999999999999998877754
Q ss_pred cCcchhhhccccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCc-------c-CCCCCC
Q 016235 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI-------F-LPGDIN 264 (393)
Q Consensus 193 f~~p~W~~aG~~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~-------~-~pGD~~ 264 (393)
..|.||++|.. +|++.+. .++++|+++|+.+|.+|+.++...++.+. . ..+|..
T Consensus 122 -~~p~w~~aG~~-------~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~ 183 (251)
T 2wsc_4 122 -NVPKWYAAGKE-------EYFASSS----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183 (251)
T ss_dssp -CCCCCSCCCSS-------SCSSCSS----------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHH
T ss_pred -CCccccccchH-------hhhccch----------HHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccc
Confidence 34679886542 3544431 12456888888889998876433222221 0 112457
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhcCccccchhhhcc
Q 016235 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (393)
Q Consensus 265 yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlenL~~hlaDP~~~N~~~~~~ 336 (393)
||||+ ||||++.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||+|||++++++
T Consensus 184 yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 184 YPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp SSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred CCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 99997 99999976 67899999999999 999999999999999999999999999999999999875
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=7.2e-54 Score=407.36 Aligned_cols=192 Identities=43% Similarity=0.746 Sum_probs=138.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhcccccccCcchhhh
Q 016235 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200 (393)
Q Consensus 121 r~~wl~~~~~~~P~yLdGslPGD~GFDPLGLs~dpe~~~~yREAELkHGR~AMLA~vG~lvpEll~~~G~~~f~~p~W~~ 200 (393)
|+.|+|.. ++|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++. +.|++
T Consensus 45 ~~~w~P~~--~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~~~~~ 114 (241)
T 2wsc_1 45 AAHWMPGE--PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------GNWVK 114 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C----
T ss_pred ccccCCCC--CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------Ccccc
Confidence 45677654 489999999999999999999999999999999999999999999999999998643 23555
Q ss_pred ccc-cccCCCcccccCCCcccccchhhHHHHHHHHHHHhhcchhhhcccccccCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 016235 201 VGY-SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279 (393)
Q Consensus 201 aG~-~~l~g~~l~ylg~P~l~~ag~q~i~~i~~~Qillm~g~E~~r~~gi~~~~p~G~~~pGD~~yPGg~gFDPLGLakd 279 (393)
++. ..+++...+|++.|.. ++.++.++++|+++++.+|.+|+.+. .+++..|||| .|||||+.+|
T Consensus 115 a~~~~~~~~g~a~~~~~~~~----~~~~~~i~~iq~l~ig~~E~~r~~~~---------~~~~~~yPgg-~fDPlgl~~~ 180 (241)
T 2wsc_1 115 AQEWAALPGGQATYLGNPVP----WGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYSKD 180 (241)
T ss_dssp -CCCCSCSSCSSCCSSSCSS----SSSHHHHHHHHHHHTHHHHHHHTSCC---------SSCCSSSCSC-CSCSSSCSCS
T ss_pred ccchhccCCcchhhhcCcch----HHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCCCCCCC-cccccccccc
Confidence 432 2344444556665531 23466778899998888999886531 1235579999 6999999999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hccCCCchhhhhhhhcCccccchhhhcc
Q 016235 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (393)
Q Consensus 280 pe~~~elklKEIKNGRLAMlA~lGf~aQe-~VTGkGPlenL~~hlaDP~~~N~~~~~~ 336 (393)
+++++++|++|||||||||+|++|+++|+ ++||+||++||.+|++||+|||+++++.
T Consensus 181 ~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 181 PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp SSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 99999999999999999999999999999 6899999999999999999999998874
No 7
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.60 E-value=5.7e-17 Score=156.40 Aligned_cols=110 Identities=25% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhh--h-----hhhhcCccc--------
Q 016235 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN--L-----LDHISDPLH-------- 328 (393)
Q Consensus 264 ~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlen--L-----~~hlaDP~~-------- 328 (393)
.+|||++||||||++||++++++|.+||||||+||+|++|+++|+++++.|.+.. + .+.++||..
T Consensus 80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~l 159 (269)
T 2wsc_2 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVF 159 (269)
T ss_dssp --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTH
T ss_pred cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHH
Confidence 4789989999999999999999999999999999999999999999997654411 1 112223210
Q ss_pred -------------------------cchhhh-----c-ccCCCC----CCChhhhhhcccchhcchhhhHHhhhcccccc
Q 016235 329 -------------------------NNLLSM-----V-KSMDDP----SGCPLERMRRCQFRCNQTRRSLVLSMLTITPK 373 (393)
Q Consensus 329 -------------------------~N~~~~-----~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (393)
+|.... - ...-|| +..|+++.+.+..|++|||.+|++.++++.++
T Consensus 160 iG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~ 239 (269)
T 2wsc_2 160 IGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 239 (269)
T ss_dssp HHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHH
T ss_pred HHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 000000 0 000122 23455567778899999999999999998876
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.60 E-value=1.1e-15 Score=144.67 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCC-----chh-----hhh-----hhhcCccc
Q 016235 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG-----PVQ-----NLL-----DHISDPLH 328 (393)
Q Consensus 264 ~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkG-----Ple-----nL~-----~hlaDP~~ 328 (393)
.+|||++||||||++|+++++++|..||||||+||+|++|+++|++++..| |+- ... +.+.+|..
T Consensus 39 ~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~ 118 (232)
T 2bhw_A 39 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL 118 (232)
T ss_dssp CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTS
T ss_pred cCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcch
Confidence 479999999999999999999999999999999999999999999876432 110 000 11222321
Q ss_pred cc---hhhh--------------------ccc---------CCCC---CCChhhhhhcccchhcchhhhHHhhhcccccc
Q 016235 329 NN---LLSM--------------------VKS---------MDDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTITPK 373 (393)
Q Consensus 329 ~N---~~~~--------------------~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (393)
.. +.+. ... .-|| ...+.+..+.+..|++|||.+|++.++++..+
T Consensus 119 ~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~ 198 (232)
T 2bhw_A 119 VHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 198 (232)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHH
Confidence 10 0000 000 0122 33566677788899999999999999988766
Q ss_pred e
Q 016235 374 K 374 (393)
Q Consensus 374 ~ 374 (393)
.
T Consensus 199 ~ 199 (232)
T 2bhw_A 199 I 199 (232)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.56 E-value=3.5e-16 Score=148.87 Aligned_cols=110 Identities=23% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCCCChHH-------------------------------------------HHHHHHHHHhhhHHHHH
Q 016235 263 INYPGGALFDPLNLSKDPVA-------------------------------------------FEELKVKEIKNGRLAMV 299 (393)
Q Consensus 263 ~~yPGg~gFDPLGLakdpe~-------------------------------------------~~elklKEIKNGRLAMl 299 (393)
..+|||++||||||++|||. ++++|..||||||+||+
T Consensus 26 GslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAML 105 (243)
T 3pl9_A 26 GSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAML 105 (243)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHHH
Confidence 34899999999999999872 78999999999999999
Q ss_pred HHHHHHHhhhccCCCchhh-----h---hhhhcCccccchhhh---------------------------cccCCCC---
Q 016235 300 AWLGFYIQAAFTGKGPVQN-----L---LDHISDPLHNNLLSM---------------------------VKSMDDP--- 341 (393)
Q Consensus 300 A~lGf~aQe~VTGkGPlen-----L---~~hlaDP~~~N~~~~---------------------------~~~~~~~--- 341 (393)
|++|++++|+++|- .+-. + .+.+.+|...++.+. ... -||
T Consensus 106 AvlG~lvpE~l~g~-~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~~~~~~~PG~~-FDPLGl 183 (243)
T 3pl9_A 106 ATLGALTVEGLTGI-TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGT-FDPLGL 183 (243)
T ss_dssp HHHHHHHHHHHHSC-CTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTCCCGG-GCTTCT
T ss_pred HHHHHHhHHhhcCc-ccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccCCccccCCCcc-hhhccc
Confidence 99999999998763 1100 0 012223322111100 000 122
Q ss_pred CCChhhhhhcccchhcchhhhHHhhhcccccce
Q 016235 342 SGCPLERMRRCQFRCNQTRRSLVLSMLTITPKK 374 (393)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (393)
+..+.+..+.+..|+||+|.+|++.++++..+.
T Consensus 184 ~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~ 216 (243)
T 3pl9_A 184 ASDPEKKPILQLAEIKHARLAMVGFLGFAVQAA 216 (243)
T ss_dssp TCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 335667788888999999999999999988764
No 10
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.55 E-value=8.3e-16 Score=146.27 Aligned_cols=109 Identities=24% Similarity=0.258 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhh----------hhhhhcCccccc-hh
Q 016235 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQN----------LLDHISDPLHNN-LL 332 (393)
Q Consensus 264 ~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPlen----------L~~hlaDP~~~N-~~ 332 (393)
.+|||++||||||++||++++++|..||||||+||+|++|+++|++++. +.+.+ ..+.+.+|.... +.
T Consensus 61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~-~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~ 139 (241)
T 2wsc_1 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY-GNWVKAQEWAALPGGQATYLGNPVPWGTLP 139 (241)
T ss_dssp CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC-C-----CCCCSCSSCSSCCSSSCSSSSSHH
T ss_pred CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC-CccccccchhccCCcchhhhcCcchHHHHH
Confidence 5799999999999999999999999999999999999999999998753 11100 001122232111 10
Q ss_pred hh----------------c----------ccCCCC---CCChhhhhhcccchhcchhhhHHhhhcccccc
Q 016235 333 SM----------------V----------KSMDDP---SGCPLERMRRCQFRCNQTRRSLVLSMLTITPK 373 (393)
Q Consensus 333 ~~----------------~----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (393)
+. . ...-|| +..+.+..+.+-.|+||||.+|++.++++..+
T Consensus 140 ~i~~iq~l~ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~ 209 (241)
T 2wsc_1 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQ 209 (241)
T ss_dssp HHHHHHHHHTHHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhh
Confidence 00 0 000122 23455566777889999999999999999887
No 11
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.55 E-value=3.4e-16 Score=149.70 Aligned_cols=53 Identities=36% Similarity=0.612 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 016235 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (393)
Q Consensus 264 ~yPGg~gFDPLGLakdpe~~~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPl 316 (393)
.+|||++||||||++||+++++++.+||||||+||+|++|+++||++|+.|++
T Consensus 69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999999999999999999999999999998776
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.42 E-value=5.9e-15 Score=142.82 Aligned_cols=52 Identities=37% Similarity=0.512 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCCChHHH------HHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 016235 264 NYPGGALFDPLNLSKDPVAF------EELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (393)
Q Consensus 264 ~yPGg~gFDPLGLakdpe~~------~elklKEIKNGRLAMlA~lGf~aQe~VTGkGPl 316 (393)
.+|||++|||||| +||+++ +.++..||||||+||+|++|+++|+++++.|.+
T Consensus 72 ~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 72 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp --------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred cCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 4788889999999 688888 999999999999999999999999999987643
Done!