Query 016236
Match_columns 392
No_of_seqs 119 out of 1326
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 1.1E-84 2.3E-89 678.4 43.9 392 1-392 122-518 (545)
2 PRK14104 chaperonin GroEL; Pro 100.0 2.1E-84 4.6E-89 674.9 43.3 392 1-392 122-518 (546)
3 PRK00013 groEL chaperonin GroE 100.0 4.9E-84 1.1E-88 671.6 44.0 392 1-392 121-517 (542)
4 PTZ00114 Heat shock protein 60 100.0 8.6E-84 1.9E-88 672.5 43.8 392 1-392 133-533 (555)
5 PRK12849 groEL chaperonin GroE 100.0 1.8E-83 3.9E-88 667.4 44.0 391 1-392 121-516 (542)
6 cd03344 GroEL GroEL_like type 100.0 4E-83 8.6E-88 662.9 44.8 391 1-392 119-514 (520)
7 TIGR02348 GroEL chaperonin Gro 100.0 4.8E-83 1E-87 663.2 43.8 391 1-392 120-515 (524)
8 CHL00093 groEL chaperonin GroE 100.0 1.1E-82 2.4E-87 661.2 42.3 390 1-392 121-518 (529)
9 PRK12850 groEL chaperonin GroE 100.0 2.5E-82 5.4E-87 659.7 43.3 391 1-392 122-517 (544)
10 PRK12851 groEL chaperonin GroE 100.0 3.9E-82 8.4E-87 657.8 43.4 391 1-392 122-517 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 3.1E-82 6.6E-87 662.9 40.8 391 1-392 177-574 (600)
12 KOG0356 Mitochondrial chaperon 100.0 1.6E-81 3.5E-86 622.7 30.2 388 1-391 135-529 (550)
13 cd03343 cpn60 cpn60 chaperonin 100.0 2.1E-64 4.5E-69 524.8 36.3 337 1-392 122-510 (517)
14 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.2E-64 2.5E-69 521.9 31.2 331 1-392 119-476 (484)
15 TIGR02347 chap_CCT_zeta T-comp 100.0 2.5E-63 5.5E-68 516.5 36.5 337 1-392 123-519 (531)
16 TIGR02339 thermosome_arch ther 100.0 3.5E-63 7.6E-68 515.6 36.1 337 1-392 123-513 (519)
17 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.9E-62 4.1E-67 510.8 35.6 342 1-392 115-519 (527)
18 COG0459 GroL Chaperonin GroEL 100.0 2.3E-64 5E-69 519.2 19.8 369 1-392 118-507 (524)
19 TIGR02340 chap_CCT_alpha T-com 100.0 2.7E-62 5.9E-67 510.3 35.5 342 1-392 119-523 (536)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.9E-62 4.2E-67 509.8 33.4 344 1-392 115-509 (515)
21 cd03339 TCP1_epsilon TCP-1 (CT 100.0 7.6E-62 1.7E-66 506.1 34.9 337 1-392 130-521 (526)
22 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2E-61 4.4E-66 502.7 36.4 340 1-392 123-513 (522)
23 TIGR02342 chap_CCT_delta T-com 100.0 2E-61 4.4E-66 501.8 33.8 343 1-392 116-510 (517)
24 TIGR02343 chap_CCT_epsi T-comp 100.0 4.1E-61 9E-66 500.6 35.2 337 1-392 134-525 (532)
25 TIGR02345 chap_CCT_eta T-compl 100.0 6.8E-61 1.5E-65 498.4 35.0 340 1-392 124-513 (522)
26 TIGR02344 chap_CCT_gamma T-com 100.0 9.5E-61 2.1E-65 498.0 34.8 337 1-392 123-515 (525)
27 TIGR02346 chap_CCT_theta T-com 100.0 4.9E-61 1.1E-65 499.9 30.8 344 1-392 125-513 (531)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 9.7E-60 2.1E-64 489.2 37.2 336 1-392 122-507 (517)
29 PTZ00212 T-complex protein 1 s 100.0 3.6E-60 7.8E-65 493.9 29.5 336 1-392 134-519 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.2E-59 2.6E-64 484.5 31.5 320 1-392 123-474 (480)
31 cd03341 TCP1_theta TCP-1 (CTT 100.0 5.4E-59 1.2E-63 478.7 32.8 322 1-392 115-465 (472)
32 cd00309 chaperonin_type_I_II c 100.0 1.9E-58 4.2E-63 474.3 35.2 320 1-392 115-459 (464)
33 TIGR02341 chap_CCT_beta T-comp 100.0 1.2E-58 2.6E-63 480.8 32.2 336 1-392 123-508 (519)
34 KOG0361 Chaperonin complex com 100.0 2.8E-56 6E-61 425.1 22.5 340 1-392 127-516 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.2E-54 2.7E-59 447.8 33.7 335 2-392 97-477 (485)
36 KOG0358 Chaperonin complex com 100.0 1.7E-51 3.7E-56 391.7 21.3 350 1-392 133-527 (534)
37 KOG0363 Chaperonin complex com 100.0 2.6E-48 5.6E-53 368.5 24.1 335 2-392 128-512 (527)
38 KOG0364 Chaperonin complex com 100.0 1.6E-47 3.5E-52 370.1 18.1 337 1-392 126-514 (527)
39 KOG0360 Chaperonin complex com 100.0 4.6E-46 1E-50 363.0 22.5 340 2-392 127-529 (545)
40 KOG0357 Chaperonin complex com 100.0 3.9E-46 8.4E-51 350.6 13.2 240 106-392 138-389 (400)
41 KOG0359 Chaperonin complex com 100.0 7.8E-44 1.7E-48 344.1 20.7 334 2-391 125-507 (520)
42 KOG0362 Chaperonin complex com 100.0 2.3E-41 5E-46 332.0 25.7 334 2-392 134-514 (537)
43 cd03333 chaperonin_like chaper 100.0 4.1E-31 9E-36 244.2 20.3 192 21-284 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 100.0 2.1E-28 4.6E-33 233.4 21.1 198 34-285 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.0 2.1E-09 4.6E-14 118.7 13.3 205 36-295 336-578 (1598)
46 COG0459 GroL Chaperonin GroEL 98.0 7.7E-06 1.7E-10 85.5 6.1 90 112-217 259-355 (524)
47 PTZ00212 T-complex protein 1 s 62.0 18 0.00039 38.2 6.4 45 42-86 178-223 (533)
48 TIGR02345 chap_CCT_eta T-compl 47.6 6.3 0.00014 41.6 0.1 61 121-182 245-314 (522)
49 TIGR02341 chap_CCT_beta T-comp 47.2 31 0.00067 36.4 5.2 44 42-86 167-212 (519)
50 PRK13600 putative ribosomal pr 45.8 79 0.0017 24.9 6.0 56 113-178 19-74 (84)
51 PF01985 CRS1_YhbY: CRS1 / Yhb 37.9 73 0.0016 24.8 4.8 66 115-182 8-75 (84)
52 smart00574 POX domain associat 37.2 54 0.0012 28.3 4.1 53 238-303 73-126 (140)
53 PRK10343 RNA-binding protein Y 36.4 2E+02 0.0044 23.2 7.2 68 113-182 8-77 (97)
54 PRK13601 putative L7Ae-like ri 34.2 1.3E+02 0.0028 23.5 5.5 54 115-178 16-69 (82)
55 PRK06683 hypothetical protein; 32.4 1.7E+02 0.0036 22.8 6.0 54 115-178 19-72 (82)
56 PF07526 POX: Associated with 30.5 66 0.0014 27.8 3.7 41 263-303 85-126 (140)
57 PF04312 DUF460: Protein of un 30.5 68 0.0015 27.7 3.7 44 112-184 65-108 (138)
58 PLN02512 acetylglutamate kinas 28.1 1.2E+02 0.0026 29.7 5.5 47 244-292 42-90 (309)
59 PRK00153 hypothetical protein; 27.6 3.3E+02 0.0071 22.0 7.6 34 222-260 9-48 (104)
60 PRK13602 putative ribosomal pr 26.5 2.4E+02 0.0052 21.8 5.9 54 115-178 19-72 (82)
61 TIGR00103 DNA_YbaB_EbfC DNA-bi 24.8 3.8E+02 0.0081 21.7 7.9 35 222-261 11-51 (102)
62 COG3962 Acetolactate synthase 24.6 38 0.00082 35.2 1.3 38 268-305 216-253 (617)
63 cd04250 AAK_NAGK-C AAK_NAGK-C: 24.3 3.1E+02 0.0068 26.1 7.6 48 244-293 9-58 (279)
64 TIGR01166 cbiO cobalt transpor 24.0 79 0.0017 28.0 3.2 42 93-134 142-188 (190)
65 PF01113 DapB_N: Dihydrodipico 23.0 1.3E+02 0.0028 25.0 4.1 41 101-143 71-111 (124)
66 PRK01018 50S ribosomal protein 22.8 3E+02 0.0064 22.1 6.0 27 115-141 24-50 (99)
67 COG4427 Uncharacterized protei 22.5 1.8E+02 0.004 28.1 5.3 60 222-281 225-295 (350)
68 cd04240 AAK_UC AAK_UC: Unchara 21.9 1.7E+02 0.0037 26.7 5.0 36 253-293 1-36 (203)
69 KOG2663 Acetolactate synthase, 21.2 89 0.0019 29.8 2.9 26 253-279 122-147 (309)
70 TIGR00253 RNA_bind_YhbY putati 21.1 4.4E+02 0.0096 21.1 6.8 68 113-182 6-75 (95)
71 PF07278 DUF1441: Protein of u 21.0 1.5E+02 0.0034 26.0 4.2 27 314-340 102-128 (152)
72 PF01486 K-box: K-box region; 20.6 2.7E+02 0.0059 22.2 5.4 58 223-284 12-71 (100)
73 PRK02955 small acid-soluble sp 20.4 96 0.0021 23.4 2.4 32 256-294 13-44 (68)
74 COG4996 Predicted phosphatase 20.0 2E+02 0.0044 24.8 4.6 66 93-158 19-92 (164)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-84 Score=678.44 Aligned_cols=392 Identities=39% Similarity=0.623 Sum_probs=377.4
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++|+++.+++.+||++|+++++.+++++++|+.+++++|.|+++.|++..+++++++|++|++||.+
T Consensus 122 ~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~ 201 (545)
T PRK12852 122 IAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLS 201 (545)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccC
Confidence 47889999999999999887789999999999999999999999999999999999998887678999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||++++++|+.+++||+||++|++|+++++++|+|+.+.++|+||||++++|+++++++|+.|+++|.++|++||+|+|
T Consensus 202 p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~ 281 (545)
T PRK12852 202 PYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGF 281 (545)
T ss_pred CccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++|+++|+|||++|||++++++.+++++++++++||+|+.|++++++|++++|+++++.+..|+++|+++++++.+
T Consensus 282 ~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (545)
T PRK12852 282 GDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYD 361 (545)
T ss_pred ccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 99999999999999999999988788899999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|++++..|++++..++++|+|++
T Consensus 362 ~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~ 441 (545)
T PRK12852 362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGIN 441 (545)
T ss_pred HHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999988766788999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.||++||+|||+|+.++ ++|++.+++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 442 ~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (545)
T PRK12852 442 IVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTT 518 (545)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999 9998755678999999999999999999999999999999999999999986
No 2
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.1e-84 Score=674.88 Aligned_cols=392 Identities=41% Similarity=0.630 Sum_probs=377.1
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++|+++.+++.+||++|+++++.+++++++|+.++|.+|.|.++.++++++++++++|++|++||+|
T Consensus 122 ~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~ 201 (546)
T PRK14104 122 LAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYIS 201 (546)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCC
Confidence 47889999999999999877789999999999999999999999999999999999988887778999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||+++|+.+..++++|+|+++|.+++++++++|+|+.+.++|+||||++++|+++|+++|..|++++.++|+|||+|+|
T Consensus 202 p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~ 281 (546)
T PRK14104 202 PYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGF 281 (546)
T ss_pred cchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++|+++|+|||++|||++++++.++.++++++++||+|++|++++++|++++||++++.+..|+++|+++++++++
T Consensus 282 g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (546)
T PRK14104 282 GDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYD 361 (546)
T ss_pred CcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999987
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+|||+||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|++++..|+++...++++|+|++
T Consensus 362 ~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~ 441 (546)
T PRK14104 362 REKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVE 441 (546)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988545889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.||++||+|||+|+.++ .+|++.+.+++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 442 ~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~i 518 (546)
T PRK14104 442 IVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITT 518 (546)
T ss_pred HHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9998755567999999999999999999999999999999999999999985
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.9e-84 Score=671.64 Aligned_cols=392 Identities=42% Similarity=0.609 Sum_probs=375.5
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|.+.++++|+++++|+++.++|.+||+||+++++.+++++++|+..++++|.|+|+.+.+..+++++++|++|++||.+
T Consensus 121 ~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~ 200 (542)
T PRK00013 121 KAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLS 200 (542)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCccc
Confidence 37889999999999999888899999999999899999999999999998888999877766688999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||.+++++++.+++||+||++|++|++++++.+++++++++|+||||++++|+++++++|+.|+++|+++|++||+|+|
T Consensus 201 ~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~ 280 (542)
T PRK00013 201 PYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGF 280 (542)
T ss_pred ccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCc
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++|+++|+|||.+|||++++++.+++++++++++||+|+.|++++++|+||++|++++++..|+++|+++++++.+
T Consensus 281 ~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 360 (542)
T PRK00013 281 GDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYD 360 (542)
T ss_pred ccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999887
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+|||+||+|+++||+|||+|+.+++|++|+++||+|++|+++++|||||||++|++++.+|+++...++++|+|++
T Consensus 361 ~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~ 440 (542)
T PRK00013 361 REKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGIN 440 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988333889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.|||+||+|||+|+.++ .+|++..++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 441 ~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (542)
T PRK00013 441 IVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTT 517 (542)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9998755567999999999999999999999999999999999999999986
No 4
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=8.6e-84 Score=672.50 Aligned_cols=392 Identities=45% Similarity=0.669 Sum_probs=375.9
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|.+.++++|+++++|+++.++|.+||+||+++++.+++++++|+..++++|.|.++.|++++|++++++|++|++||.|
T Consensus 133 ~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~ 212 (555)
T PTZ00114 133 LAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYIS 212 (555)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccc
Confidence 37889999999999999888899999999999999999999999999999999999999998886799999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||++++++|..+++||+||++|++|++++++.|+|++++++|+||||++++|+++++++|..|+++|.++|++||+|+|
T Consensus 213 ~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~ 292 (555)
T PTZ00114 213 PYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGF 292 (555)
T ss_pred cccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCC-CCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc--
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS-- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~-~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s-- 237 (392)
|++++++|+|||++|||+++++. .++.++++++++||+|++|+++++++++++++++++.|++|+++|+.+++.+++
T Consensus 293 g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~ 372 (555)
T PTZ00114 293 GDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEY 372 (555)
T ss_pred CcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999997 777789999999999999999999999999999999999999999999999876
Q ss_pred --HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcC--C-ChhHH
Q 016236 238 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--T-NSDQK 312 (392)
Q Consensus 238 --~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~--~-~~~~q 312 (392)
++|+|||+||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|++++. . ++++|
T Consensus 373 ~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~ 452 (555)
T PTZ00114 373 DKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR 452 (555)
T ss_pred HHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998864 3 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhc
Q 016236 313 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 391 (392)
Q Consensus 313 ~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 391 (392)
+|+++|++||+.||++||+|||+|+.++ .+|++++++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+
T Consensus 453 ~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~ 532 (555)
T PTZ00114 453 TGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLT 532 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 999774567899999999999999999999999999999999999999998
Q ss_pred C
Q 016236 392 I 392 (392)
Q Consensus 392 i 392 (392)
|
T Consensus 533 i 533 (555)
T PTZ00114 533 T 533 (555)
T ss_pred H
Confidence 5
No 5
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-83 Score=667.40 Aligned_cols=391 Identities=43% Similarity=0.628 Sum_probs=376.5
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++|+++.++|.++|+||+++++.+++++++|+..++.+|.|.++.|++++|++++++|++|++||.+
T Consensus 121 ~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~ 200 (542)
T PRK12849 121 KAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLS 200 (542)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCccc
Confidence 37889999999999999888889999999999999999999999999998899999999998888999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||.+++++++.+++||+|+++|++|++++++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+|
T Consensus 201 ~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~ 280 (542)
T PRK12849 201 PYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGF 280 (542)
T ss_pred CcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCc
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
+++|+++|+|||.+|||+++++..+++++++++++||+|+.|++++++|+++++|++++++..|+++|+++++++++
T Consensus 281 ~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~ 360 (542)
T PRK12849 281 GDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYD 360 (542)
T ss_pred cchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+|||+||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|..|++++..++++|+|++
T Consensus 361 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~ 440 (542)
T PRK12849 361 REKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVE 440 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998834889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.||++||+|||+||.++ .+|++.+ .++|||+.+|+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 441 ~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~i 516 (542)
T PRK12849 441 IVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTT 516 (542)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999 9998754 57999999999999999999999999999999999999999986
No 6
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4e-83 Score=662.86 Aligned_cols=391 Identities=45% Similarity=0.663 Sum_probs=376.7
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|.+.++++|+++++|+++.++|.+||+||+++++.+++++++|+..++.+|.|.+++|+++.|++++++|++|++||.+
T Consensus 119 ~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~ 198 (520)
T cd03344 119 KAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLS 198 (520)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCC
Confidence 37889999999999999988899999999999999999999999999998889999999998777999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||.++|+++..+++||+|+++|+++++++++.++++++.++|+||||++++|+++++++|..|++++.+++++||+|++
T Consensus 199 ~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~ 278 (520)
T cd03344 199 PYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGF 278 (520)
T ss_pred CccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCC
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++++++|+|||.+|||++++++.+++++++++++||+|+.|++++++|+++++|+++++++.|+++|+++++++++
T Consensus 279 ~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 358 (520)
T cd03344 279 GDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358 (520)
T ss_pred CcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999988777899999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+||++||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|++++.+|++++..++++|+|++
T Consensus 359 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~ 438 (520)
T cd03344 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIE 438 (520)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988767889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.||++||+|||+||.++ ++|++... ++|||+.+|+++||++.|||||+.||.+++++|+++|++||+|
T Consensus 439 ~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i 514 (520)
T cd03344 439 IVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT 514 (520)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99987544 8999999999999999999999999999999999999999986
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.8e-83 Score=663.20 Aligned_cols=391 Identities=41% Similarity=0.617 Sum_probs=374.5
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++|+++.++|.+||+||+++++++++++++|+..++++|.|.|+.|++..+++++++|++|++||.+
T Consensus 120 ~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~ 199 (524)
T TIGR02348 120 KAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYIS 199 (524)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCC
Confidence 47889999999999999888899999999999999999999999999999899999988888788999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||.+++++++..++||+||++|+++++++++.+++++++++|+||||++++|+++++++|+.|+++|+++|++||+|+|
T Consensus 200 ~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~ 279 (524)
T TIGR02348 200 PYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGF 279 (524)
T ss_pred cccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++|+++|+|||++|||++++++.+++++++++++||+|+.|++++++|++++|+++++++..|+++|+++++++.+
T Consensus 280 ~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~ 359 (524)
T TIGR02348 280 GDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYD 359 (524)
T ss_pred cchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+|||+||+|+++||+|||+|+.+++|++|+++||+|++|+++++|||||||++|++++..|++....++++|+|++
T Consensus 360 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~ 439 (524)
T TIGR02348 360 REKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGID 439 (524)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999983323889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.||++||+|||+||.++ ++|++. +.++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 440 ~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 515 (524)
T TIGR02348 440 IVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTT 515 (524)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999 999875 335999999999999999999999999999999999999999986
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.1e-82 Score=661.17 Aligned_cols=390 Identities=37% Similarity=0.570 Sum_probs=372.1
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.+++.|+++++|+++.++|.+||++|+++++.|++++++|+.+++++|.|.++.|+...+++++++|++|++||.|
T Consensus 121 ~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~ 200 (529)
T CHL00093 121 KATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFIS 200 (529)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCc
Confidence 37889999999999999988899999999999999999999999999999899999888776788999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCH-HHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAG 159 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~-~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~ 159 (392)
|||+++|++|..+++||+|+++|++++.. .+++++++++.++|+||||++++|+++++++|+.|+.+|+++|++||+|+
T Consensus 201 p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~ 280 (529)
T CHL00093 201 PYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPG 280 (529)
T ss_pred CccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCC
Confidence 99999999999999999999999999987 78999999999999999999999999999999999999989999999999
Q ss_pred CccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc--
Q 016236 160 LAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS-- 237 (392)
Q Consensus 160 ~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s-- 237 (392)
+|++|+++|+|||++|||++++++.+++++++++++||+|++|++++++++|++ .++++.+..||.+++++++.+++
T Consensus 281 ~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (529)
T CHL00093 281 FGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSY 359 (529)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHH
Confidence 999999999999999999999988888899999999999999999999999998 56789999999999999999887
Q ss_pred --HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcC-C-ChhHHH
Q 016236 238 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-T-NSDQKI 313 (392)
Q Consensus 238 --~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~-~-~~~~q~ 313 (392)
++|+|||+||+|+++||+|||+|+++++|+||+++||+|++|+++++|+|||||++|++||..|++++. . ++++|+
T Consensus 360 ~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~ 439 (529)
T CHL00093 360 EKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELI 439 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999865 4 889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 314 GVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 314 g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
|+++|++||+.||++||+|||+|+.++ .++++. +.++|||+.+|+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 440 ~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 440 GALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999765 458999999999999999999999999999999999999999986
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.5e-82 Score=659.67 Aligned_cols=391 Identities=41% Similarity=0.614 Sum_probs=373.9
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++|+++.++|.+||++|+++++.+++++++|+..++++|.|.++.++...+++++++|++|++||.|
T Consensus 122 ~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~ 201 (544)
T PRK12850 122 LAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLS 201 (544)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCc
Confidence 37889999999999999888889999999999999999999999999998888999877666688999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||+++++++..+++||+||++|+++++.+++.+++++++++|+||||++++|+++++++|+.|+++|.+++++||+|+|
T Consensus 202 p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~ 281 (544)
T PRK12850 202 PYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGF 281 (544)
T ss_pred CccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++|+++|+|||++|||++++++.+++++++++++||+|++|++++++|++++||++++++..|+++|+++++++.+
T Consensus 282 g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (544)
T PRK12850 282 GDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYD 361 (544)
T ss_pred CcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 99999999999999999999987777899999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+|||+||+|++|||+|||+|+++++|++|+++||+|++|+++++|||||||++|++++..|+++...++++|+|++
T Consensus 362 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~ 441 (544)
T PRK12850 362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGID 441 (544)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999988434889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.|||+||+|||+||.++ .+|++.. .++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 442 ~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 442 IVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999 9998753 57899999999999999999999999999999999999999986
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.9e-82 Score=657.80 Aligned_cols=391 Identities=43% Similarity=0.633 Sum_probs=374.2
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++|+++.+++.+||++|+++++.+++++++|+..++.+|.|+++.+....+++++++|++|++||.+
T Consensus 122 ~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~ 201 (541)
T PRK12851 122 RAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLS 201 (541)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccc
Confidence 37889999999999999888889999999999899999999999999998888888876655678999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||++++++|+.+++||+||++|+++++.+++.++++++.++|+||||++++|+++++++|+.|+++|.++|++||+|+|
T Consensus 202 ~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~ 281 (541)
T PRK12851 202 PYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGF 281 (541)
T ss_pred cccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++|+++|+|||++|||++++++.+++++++++++||+|+.|++.+++|+|++||++++++..|+++|+++++.+++
T Consensus 282 ~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (541)
T PRK12851 282 GDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYD 361 (541)
T ss_pred ccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999988777899999999999999999999999999999999999999999999999876
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ 316 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~ 316 (392)
++|+|||+||+|+++||+|||+|+++++|+||+++||+|++|+++++|||||||++|+++|..|++++..++++|+|++
T Consensus 362 ~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~ 441 (541)
T PRK12851 362 REKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVE 441 (541)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988766889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|++||+.||++||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 442 ~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 442 IVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999 9998754 47999999999999999999999999999999999999999986
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.1e-82 Score=662.89 Aligned_cols=391 Identities=34% Similarity=0.545 Sum_probs=372.3
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++|+++ ++|.+||++|+++++.|++|+++|+.+++++|.|.+++|++.+|++++++|++||+||.|
T Consensus 177 ~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~s 255 (600)
T PLN03167 177 KTAKALVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYIS 255 (600)
T ss_pred HHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccC
Confidence 4788999999999999975 679999999999999999999999999999999999999999887899999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||++++++|..+++||+||++|++|++++++.|+++.+.++|+||||++++|++++|++|+.|+++|.++|++||+|+|
T Consensus 256 pyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~ 335 (600)
T PLN03167 256 PYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGF 335 (600)
T ss_pred cccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS--- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s--- 237 (392)
|++++++|+|||++|||++++++.++.++++++++||+|++|++.+++|+++++.++++.+++|+.+|+..++.+.+
T Consensus 336 g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~ 415 (600)
T PLN03167 336 GERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYE 415 (600)
T ss_pred CcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999988766
Q ss_pred -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCC-ChhHH-HH
Q 016236 238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IG 314 (392)
Q Consensus 238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~q-~g 314 (392)
++|++||++|+|++++|+|||+|+.+++|+||+++||||++|+|+++|+|||||++|++++.+|++++.. .+++| +|
T Consensus 416 ~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g 495 (600)
T PLN03167 416 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVG 495 (600)
T ss_pred HHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999988654 45555 67
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 315 VQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 315 ~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+++|++||+.|||+||+|||+|+.++ .+|++++++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 496 ~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~i 574 (600)
T PLN03167 496 ADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTS 574 (600)
T ss_pred HHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9998656678999999999999999999999999999999999999999986
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-81 Score=622.74 Aligned_cols=388 Identities=43% Similarity=0.641 Sum_probs=376.4
Q ss_pred ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016236 1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s 80 (392)
+|++.++++|+++++||++.+++.+||++|+|+|..++++|++|++.+|++|.|+|+.|++++|++++++||.||+||+|
T Consensus 135 ~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiS 214 (550)
T KOG0356|consen 135 LAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYIS 214 (550)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016236 81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~ 160 (392)
|||+|+++.++++|++|++|+++.+|+++++|.|.||...+..+||+|+++|++.++|.+|+.|++++.++++|||.|||
T Consensus 215 Pyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgf 294 (550)
T KOG0356|consen 215 PYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGF 294 (550)
T ss_pred ccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhCCeEecCCCC-CCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc--
Q 016236 161 AEDRKAIMEDLAILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS-- 237 (392)
Q Consensus 161 g~~rk~~ledla~~tGa~i~s~~~~-~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s-- 237 (392)
||.|++.+.|||.+|||+++..+.+ ++++++++++||.|++++++.+.+.++.|.+++.+++.||+|++..++.+.+
T Consensus 295 Gdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~y 374 (550)
T KOG0356|consen 295 GDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 (550)
T ss_pred cchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999977 8899999999999999999999999999999999999999999999988877
Q ss_pred --HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCC-ChhHHHH
Q 016236 238 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIG 314 (392)
Q Consensus 238 --~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~g 314 (392)
++|+||+++|+||+++|.|||+|+.|++|+++|++||||++++|+++|||||||+++++|+..|+.+... +.+++.|
T Consensus 375 e~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G 454 (550)
T KOG0356|consen 375 EKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVG 454 (550)
T ss_pred hHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999988764 7789999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhc
Q 016236 315 VQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 391 (392)
Q Consensus 315 ~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 391 (392)
++++.+||..|.++||+|||.|+..+ .|++. .++|||..+|+|+||++.||+||++|.+.|+..|.++|+++++
T Consensus 455 ~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~t 529 (550)
T KOG0356|consen 455 VEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTT 529 (550)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhh
Confidence 99999999999999999999999999 99883 2899999999999999999999999999999999999999875
No 13
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.1e-64 Score=524.82 Aligned_cols=337 Identities=20% Similarity=0.300 Sum_probs=305.2
Q ss_pred ChHHHHHHHHhcccccCC--CHHHHHHHHHHhcCCc------hhHHHHHHHHHHhhccCce---------EEE--EcCCC
Q 016236 1 MAADAVVRNLDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKA 61 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~~~~l~~Va~ts~~~~------~~~~~li~~a~~~vg~~g~---------I~v--~~g~~ 61 (392)
+|.+.++++|+++++|++ +.+.+.+||+||++++ +.|++++++|+.+++.++. |+| .+|++
T Consensus 122 ~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs 201 (517)
T cd03343 122 LAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGS 201 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcC
Confidence 377899999999999996 6788999999999975 8999999999999987543 777 57888
Q ss_pred ccceeEEEeeEEEecccccccccccccccceeecCceeeecccc-------------cCCHHHHHHHH-----------H
Q 016236 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQAS-----------L 117 (392)
Q Consensus 62 ~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~~~~~l-----------~ 117 (392)
.. ++++++|++|+++|.||+|+ ..++||+|++++++ +++++++.+++ +
T Consensus 202 ~~-ds~lv~G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~ 273 (517)
T cd03343 202 VD-DTELIRGIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVD 273 (517)
T ss_pred HH-HcceeeeEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 75 69999999999999999983 26899999999998 57777776654 4
Q ss_pred HHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCce
Q 016236 118 PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG 197 (392)
Q Consensus 118 ~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG 197 (392)
.+++.|+||||++++|+++++++|..+ ++++|+++ ++++|+|||++|||+++++ ++++++++||
T Consensus 274 ~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~~v-----~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG 337 (517)
T cd03343 274 KIADTGANVVFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDMEKLARATGAKIVTN-----IDDLTPEDLG 337 (517)
T ss_pred HHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhCC
Confidence 899999999999999999999999853 47899988 7889999999999999997 8889999999
Q ss_pred eeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHH
Q 016236 198 SCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNA 274 (392)
Q Consensus 198 ~~~~v~i~---~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DA 274 (392)
+|++|++. +++|++|+||++++ .|||+|||+|+.+++|.+|+++||
T Consensus 338 ~~~~v~~~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Da 386 (517)
T cd03343 338 EAELVEERKVGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDA 386 (517)
T ss_pred ccceEEEEEECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHH
Confidence 99999854 88899999998764 789999999999999999999999
Q ss_pred HHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCC
Q 016236 275 LHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDS 348 (392)
Q Consensus 275 l~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~ 348 (392)
+|++|+++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .++++ .+.
T Consensus 387 l~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 466 (517)
T cd03343 387 LRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGN 466 (517)
T ss_pred HHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC
Confidence 99999999999 9999999999999999988665 889999999999999999999999999999999 99974 245
Q ss_pred CCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 349 SDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 349 ~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
.++|||+.+|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 467 ~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 510 (517)
T cd03343 467 KNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRI 510 (517)
T ss_pred CceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999999999999999999999986
No 14
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-64 Score=521.94 Aligned_cols=331 Identities=19% Similarity=0.267 Sum_probs=297.4
Q ss_pred ChHHHHHHHHhcccccCC---CHHHHHHHHHHhcCCc------hhHHHHHHHHHHhhccCc-e-----EEEE--cCCCcc
Q 016236 1 MAADAVVRNLDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND-L-----ITIF--DRKALY 63 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~---~~~~l~~Va~ts~~~~------~~~~~li~~a~~~vg~~g-~-----I~v~--~g~~~~ 63 (392)
+|++.++++|+++++|++ +.+.+.+||++|++++ +.|++++++|+..+++++ . |++. +|++.
T Consensus 119 ~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~- 197 (484)
T cd03342 119 LAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD- 197 (484)
T ss_pred HHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-
Confidence 378899999999999997 7888999999999975 899999999999998765 2 3332 57776
Q ss_pred ceeEEEeeEEEecccccccccccccccceeecCceeeecccccCCHHH-HHHHHHHHHhcCCCEEEEecCcchhhhhhHH
Q 016236 64 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIA 142 (392)
Q Consensus 64 ~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~ 142 (392)
+++++++|++|+++|.+|+|+ + +++||+|+++|++++..+. +...+ -.||||++++|++.++++|.
T Consensus 198 ~ds~~i~G~~~~~~~~~~~m~---~----~~~n~~Ill~~~~le~~~~~~~~~~------~~~lvi~~~~I~~~al~~l~ 264 (484)
T cd03342 198 SDTKLIRGLVLDHGARHPDMP---K----RVENAYILTCNVSLEYEKTEVNSGF------FYSVVINQKGIDPPSLDMLA 264 (484)
T ss_pred hhceEEeeEEEecCCCCCCCC---c----cccCceEEEEeCCCCCCccccCcEE------EEEEEEeCCCccHHHHHHHH
Confidence 579999999999999999983 2 6889999999999987653 32211 14799999999999999999
Q ss_pred hhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEE---EEecceEEEEcCCCChh
Q 016236 143 TDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELV 219 (392)
Q Consensus 143 ~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~~~g~~~~~ 219 (392)
.|+ |++||++ ++++|+|||++|||+++++ ++++++++||+|++| ++++++|++|++|+++
T Consensus 265 ~~~------I~av~~~-----~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~- 327 (484)
T cd03342 265 KEG------ILALRRA-----KRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP- 327 (484)
T ss_pred HCC------CeEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC-
Confidence 873 8999998 7889999999999999998 889999999999999 5788899999999875
Q ss_pred hHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHH
Q 016236 220 DIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYAS 298 (392)
Q Consensus 220 ~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g-vVpGGGa~e~~~s 298 (392)
++|||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++
T Consensus 328 ------------------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls 377 (484)
T cd03342 328 ------------------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALY 377 (484)
T ss_pred ------------------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHH
Confidence 489999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCCccccc
Q 016236 299 KELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLK 373 (392)
Q Consensus 299 ~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~g~~~dm~~~gI~Dp~~ 373 (392)
.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||+.+|+++||++.|||||+.
T Consensus 378 ~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~ 457 (484)
T cd03342 378 AHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYS 457 (484)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHH
Confidence 999998765 889999999999999999999999999999999 999752 456799999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhcC
Q 016236 374 HVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 374 v~~~al~~A~~~a~~iL~i 392 (392)
||+++++.|+++|++||||
T Consensus 458 vk~~~l~~A~e~a~~iL~I 476 (484)
T cd03342 458 VKRQILHSATVIASQLLLV 476 (484)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999997
No 15
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-63 Score=516.46 Aligned_cols=337 Identities=19% Similarity=0.258 Sum_probs=298.1
Q ss_pred ChHHHHHHHHhcccccC---CCHHHHHHHHHHhcCC------chhHHHHHHHHHHhhccCce------EEE--EcCCCcc
Q 016236 1 MAADAVVRNLDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL------ITI--FDRKALY 63 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v---~~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~g~------I~v--~~g~~~~ 63 (392)
+|.+.++++|+++++|+ .+.+.|.+||+||+++ ++.|++++++|+..+++++. |.+ ..|++.
T Consensus 123 ~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~- 201 (531)
T TIGR02347 123 IARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSA- 201 (531)
T ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCc-
Confidence 37889999999999764 4678899999999975 78999999999999987653 343 246665
Q ss_pred ceeEEEeeEEEecccccccccccccccceeecCceeeecccccCCH-------------H-----------HHHHHHHHH
Q 016236 64 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------N-----------VIRQASLPC 119 (392)
Q Consensus 64 ~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~-----------~~~~~l~~i 119 (392)
+++++++|++|+++|.+|+|++ +++||+|+++|++++.. + .+..+++++
T Consensus 202 ~ds~~v~Giv~~~~~~~~~~~~-------~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I 274 (531)
T TIGR02347 202 TDTTLIRGLVLDHGARHPDMPR-------RVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKI 274 (531)
T ss_pred cccEEEeeEEEecCcCCCCCce-------eccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999843 68999999999976532 2 234556777
Q ss_pred HhcCC-------C---EEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcC
Q 016236 120 MMQGQ-------S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNST 189 (392)
Q Consensus 120 ~~~g~-------~---lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~ 189 (392)
++.|+ + ||+++++|++.++++|..+ +|+++|++ ++++|+|||++|||+++++ ++
T Consensus 275 ~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~ 338 (531)
T TIGR02347 275 IELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VE 338 (531)
T ss_pred HHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cc
Confidence 77552 3 8889999999999999975 48999988 6778999999999999987 89
Q ss_pred CCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHh
Q 016236 190 YFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVRE 266 (392)
Q Consensus 190 ~~~~~~LG~~~~v---~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E 266 (392)
++++++||+|++| ++++++|++|++|+++ ++|||+|||+|+.+++|
T Consensus 339 ~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~TI~lrG~t~~~l~E 387 (531)
T TIGR02347 339 DLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-------------------------------KSCTILIKGPNDHTIKQ 387 (531)
T ss_pred cCCccccccceEEEEEEECCeEEEEEEcCCCC-------------------------------CeEEEEEeCCCHHHHHH
Confidence 9999999999999 6889999999999876 38999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHH
Q 016236 267 KKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKL 343 (392)
Q Consensus 267 ~~r~i~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l 343 (392)
+||+++||+|++|+++++| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|
T Consensus 388 ~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l 467 (531)
T TIGR02347 388 IKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKL 467 (531)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999 9999999999999999988665 889999999999999999999999999999999 999
Q ss_pred Hhc---CCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 344 LEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 344 ~~~---~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
++. ++.++|||+.+|++.||++.|||||+.||+++|++|+++|++||||
T Consensus 468 ~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrI 519 (531)
T TIGR02347 468 EDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519 (531)
T ss_pred HHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 752 3457899999999999999999999999999999999999999997
No 16
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.5e-63 Score=515.56 Aligned_cols=337 Identities=20% Similarity=0.285 Sum_probs=303.6
Q ss_pred ChHHHHHHHHhcccccCCC--HHHHHHHHHHhcCCc-------hhHHHHHHHHHHhhcc---Cce-------EEE--EcC
Q 016236 1 MAADAVVRNLDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDR 59 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~--~~~l~~Va~ts~~~~-------~~~~~li~~a~~~vg~---~g~-------I~v--~~g 59 (392)
+|++.++++|+++++|++. .+.|.++|+||++++ +.|++++++|+.++++ +|. |+| .+|
T Consensus 123 ~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G 202 (519)
T TIGR02339 123 KAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTG 202 (519)
T ss_pred HHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccC
Confidence 3788999999999999863 678999999999865 7899999999999984 563 445 478
Q ss_pred CCccceeEEEeeEEEecccccccccccccccceeecCceeeecccc-------------cCCHHHHHHHHH---------
Q 016236 60 KALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL--------- 117 (392)
Q Consensus 60 ~~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~~~~~l~--------- 117 (392)
++.. ++++++|++|+++|.||.|+ ..++||+|++++++ +++++++.++++
T Consensus 203 gs~~-ds~lv~G~vi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~ 274 (519)
T TIGR02339 203 GSID-DTELVEGIVVDKEPVHPGMP-------KRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEM 274 (519)
T ss_pred cChh-cceeEeeEEEecCCCCCCCc-------cccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHH
Confidence 8875 69999999999999999763 36899999999997 677888877776
Q ss_pred --HHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCC
Q 016236 118 --PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLK 195 (392)
Q Consensus 118 --~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~ 195 (392)
.+++.|+||||++++|++.++++|..+ ++++|+++ ++++|+|||++|||+++++ ++++++++
T Consensus 275 v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~ 338 (519)
T TIGR02339 275 VDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDIEKLARATGAKIVSS-----IKEITESD 338 (519)
T ss_pred HHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeCc-----hhhCChhh
Confidence 799999999999999999999999744 47889988 7889999999999999997 78888899
Q ss_pred ceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHH
Q 016236 196 LGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKIT 272 (392)
Q Consensus 196 LG~~~~v~i~---~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~ 272 (392)
||+|++|++. +++|++|+||+++. .|||+|||+|+.+++|.+|+++
T Consensus 339 LG~~~~v~~~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~ 387 (519)
T TIGR02339 339 LGYAGLVEERKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQ 387 (519)
T ss_pred ccCCceEEEEEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHH
Confidence 9999999865 48899999997764 7899999999999999999999
Q ss_pred HHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---c
Q 016236 273 NALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---Q 346 (392)
Q Consensus 273 DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~ 346 (392)
||+|++|+++++| +|||||++||+++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|+. .
T Consensus 388 DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~ 467 (519)
T TIGR02339 388 DALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEK 467 (519)
T ss_pred HHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 9999999999999 9999999999999999988665 889999999999999999999999999999999 99974 2
Q ss_pred CCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 347 DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 347 ~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
++.++|||+.+|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 468 ~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (519)
T TIGR02339 468 GNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRI 513 (519)
T ss_pred cCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 4567999999999999999999999999999999999999999986
No 17
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-62 Score=510.80 Aligned_cols=342 Identities=18% Similarity=0.230 Sum_probs=301.4
Q ss_pred ChHHHHHHHHhc-ccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhc---cCce-------EEE--EcC
Q 016236 1 MAADAVVRNLDC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGW---ENDL-------ITI--FDR 59 (392)
Q Consensus 1 ~A~~~~l~~L~~-~a~~v~--~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg---~~g~-------I~v--~~g 59 (392)
+|.+.++++|++ +++|++ +.+.|.++|+||+++ .+.|++++++|+..++ .+|. |.+ ..|
T Consensus 115 ~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~G 194 (527)
T cd03335 115 LACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHG 194 (527)
T ss_pred HHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecC
Confidence 378899999996 899987 778899999999882 4899999999999995 2232 333 368
Q ss_pred CCccceeEEEeeEEEecccccccccccccccceeecCceeeecccccCC-------------HH-----------HHHHH
Q 016236 60 KALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SN-----------VIRQA 115 (392)
Q Consensus 60 ~~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~-----------~~~~~ 115 (392)
++.. ++++++|++|+++|.+|.|+ ..++||+|++++++++. ++ .+.++
T Consensus 195 gs~~-~s~li~Givi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~ 266 (527)
T cd03335 195 KSAK-ESYLVNGYALNCTRASQGMP-------TRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKER 266 (527)
T ss_pred cChh-hcceeeeEEEecccCCCCCc-------ccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHH
Confidence 8874 79999999999999998763 37899999999997754 12 24477
Q ss_pred HHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCC-cCCCCCC
Q 016236 116 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPL 194 (392)
Q Consensus 116 l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~-~~~~~~~ 194 (392)
++.+++.|+||||++++|++.++++|..+ +|++++++ ++++|+|||++|||+++++..+++ .++++++
T Consensus 267 i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~~v-----~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~ 335 (527)
T cd03335 267 IKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVRRV-----KKEDLRRIAKATGATLVSTLANLEGEETFDPS 335 (527)
T ss_pred HHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecChhhcCcccccCHh
Confidence 88899999999999999999999999976 48999988 788899999999999999865543 3456677
Q ss_pred CceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHH
Q 016236 195 KLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKI 271 (392)
Q Consensus 195 ~LG~~~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i 271 (392)
+||+|++|+ +++++|++|+||+++ ++|||+|||+|+.+++|.+|++
T Consensus 336 ~LG~~~~v~~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i 384 (527)
T cd03335 336 YLGEAEEVVQERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSL 384 (527)
T ss_pred hCccCceEEEEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHH
Confidence 899999998 788999999998864 5899999999999999999999
Q ss_pred HHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc--
Q 016236 272 TNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-- 346 (392)
Q Consensus 272 ~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~-- 346 (392)
+||+|++++++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|++.
T Consensus 385 ~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~ 464 (527)
T cd03335 385 HDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHA 464 (527)
T ss_pred HHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999988665 889999999999999999999999999999999 998762
Q ss_pred -C--------CCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 347 -D--------SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 347 -~--------~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+ ++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||||
T Consensus 465 ~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrI 519 (527)
T cd03335 465 AAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRI 519 (527)
T ss_pred hcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 2 346899999999999999999999999999999999999999997
No 18
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-64 Score=519.22 Aligned_cols=369 Identities=33% Similarity=0.484 Sum_probs=313.9
Q ss_pred ChHHHHHHHHhcccccCCCHH-----HHHHHHHHhcCCchhHHHHHHHHHHhhcc-----CceEEEEcCCCccceeEEEe
Q 016236 1 MAADAVVRNLDCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVK 70 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~~~-----~l~~Va~ts~~~~~~~~~li~~a~~~vg~-----~g~I~v~~g~~~~~~~~~v~ 70 (392)
+|++.++++|+++++|+++.+ ...+++..++++++.|++++++|+.+++. ++.+.++..++..+++++++
T Consensus 118 ~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vve 197 (524)
T COG0459 118 LAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVE 197 (524)
T ss_pred HHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEe
Confidence 478999999999999998654 44555555556678999999999999998 78888887666668899999
Q ss_pred eEEEecccccccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCc
Q 016236 71 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTE 150 (392)
Q Consensus 71 G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~ 150 (392)
||+||+||.+|||.++ ..++||+|+++|++|+..+..+| ++.....+.||++++++..++++..++.|.+++..
T Consensus 198 G~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~ 271 (524)
T COG0459 198 GMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGA 271 (524)
T ss_pred eEEecCCccCCCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999654 47889999999999999888888 77777778888888888888888888888888888
Q ss_pred eEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHH
Q 016236 151 KVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRS 230 (392)
Q Consensus 151 ~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~ 230 (392)
++++|+.|||||.++..|+|+++.||+++.+++.+ + ....+|.|..|...++.+....|.+. ..
T Consensus 272 ~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~---~--~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~ 335 (524)
T COG0459 272 NVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG---E--RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AG 335 (524)
T ss_pred CEEEEECCCCcHHHHHHHHhhcceecceecchhhH---H--HHHHccCceEEeecccCceeecCccc-----------cc
Confidence 88888888888888888888888888888876532 1 45667777777777776666555320 12
Q ss_pred Hhhhc-cc----HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHh
Q 016236 231 TIKLS-TS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL 304 (392)
Q Consensus 231 ~l~~~-~s----~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~ 304 (392)
+++.. .+ +++++|.++ .|++|||+|||+|+.+++|+||++|||||++|+++++| +|||||++|++++..|+++
T Consensus 336 ~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~ 414 (524)
T COG0459 336 LVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREY 414 (524)
T ss_pred eEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhh
Confidence 23332 22 788888888 99999999999999999999999999999999999999 9999999999999999988
Q ss_pred c-CCCh-hHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCeeEeCCCCcc-ccccccCCccccccHHHHH
Q 016236 305 Q-TTNS-DQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPARGNY-VDMFKCGDVDPLKHVPSEF 379 (392)
Q Consensus 305 ~-~~~~-~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~-~~~G~d~~~g~~-~dm~~~gI~Dp~~v~~~al 379 (392)
+ ..++ ++|+|+++|++||+.||++||+|||+||.++ .+|++.+. +++|||+.+|++ .||++.|||||+.|++++|
T Consensus 415 ~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al 494 (524)
T COG0459 415 AMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSAL 494 (524)
T ss_pred hccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHH
Confidence 3 3344 9999999999999999999999999999999 99998654 459999999999 8899999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 016236 380 AKATSMISLKNAI 392 (392)
Q Consensus 380 ~~A~~~a~~iL~i 392 (392)
++|+++|+++|+|
T Consensus 495 ~~A~e~a~llL~~ 507 (524)
T COG0459 495 KNAAEAAGLLLTI 507 (524)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-62 Score=510.32 Aligned_cols=342 Identities=18% Similarity=0.226 Sum_probs=302.5
Q ss_pred ChHHHHHHHHhcc-cccCC--CHHHHHHHHHHhcC------CchhHHHHHHHHHHhhc---cCce-------EEE--EcC
Q 016236 1 MAADAVVRNLDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDR 59 (392)
Q Consensus 1 ~A~~~~l~~L~~~-a~~v~--~~~~l~~Va~ts~~------~~~~~~~li~~a~~~vg---~~g~-------I~v--~~g 59 (392)
+|++.++++|+++ ++|++ +.+++.+||+||++ +++.|++++++|+..++ .+|. |.+ ..|
T Consensus 119 ~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G 198 (536)
T TIGR02340 119 LACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHG 198 (536)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecC
Confidence 3788999999975 88987 77889999999998 57899999999999996 3342 333 478
Q ss_pred CCccceeEEEeeEEEecccccccccccccccceeecCceeeecccccCCHH------------------------HHHHH
Q 016236 60 KALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN------------------------VIRQA 115 (392)
Q Consensus 60 ~~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~------------------------~~~~~ 115 (392)
++. +++++++|++|+++|.||.|+ .+++||+|++++++++..+ .+.+.
T Consensus 199 ~s~-~~s~~i~Gi~i~~~~~~~~m~-------~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~ 270 (536)
T TIGR02340 199 GSA-RESYLVKGYALNCTRASQQMP-------KRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKER 270 (536)
T ss_pred CCc-cccEEEEEEEEecccCCCCCc-------ceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHH
Confidence 887 679999999999999998763 3789999999999875432 23466
Q ss_pred HHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCC-cCCCCCC
Q 016236 116 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPL 194 (392)
Q Consensus 116 l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~-~~~~~~~ 194 (392)
++.+++.|.+|||++++|++.++++|..+ ++++++++ ++++|+|||++|||+++++..+++ .++++++
T Consensus 271 i~~I~~~g~~lvi~~k~I~~~a~~~L~k~------~I~~i~rv-----~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~ 339 (536)
T TIGR02340 271 IKKILKAGANVVLTTGGIDDMCLKYFVEA------GAMGVRRC-----KKEDLKRIAKATGGTLVSTLADLEGEETFDAS 339 (536)
T ss_pred HHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCEEecchhhcCcccccccc
Confidence 78888999999999999999999999976 47999988 788899999999999999975553 4567788
Q ss_pred CceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHH
Q 016236 195 KLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKI 271 (392)
Q Consensus 195 ~LG~~~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i 271 (392)
+||+|++|+ +++++|++|++|++++ +|||+|||+|+.+++|++|++
T Consensus 340 ~LG~~~~v~~~~ig~~~~~~i~~~~~~~-------------------------------~~TIlirG~t~~~l~E~~r~i 388 (536)
T TIGR02340 340 YLGFADEVVEERIADDECILIKGTKGRK-------------------------------SASIILRGANDFMLDEMERSL 388 (536)
T ss_pred ccccCceEEEEEECCeEEEEEEcCCCCC-------------------------------EEEEEEeCCcHHHHHHHHHHH
Confidence 899999998 7899999999988663 899999999999999999999
Q ss_pred HHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc--
Q 016236 272 TNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-- 346 (392)
Q Consensus 272 ~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~-- 346 (392)
+||+|++|+++++| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|++.
T Consensus 389 ~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~ 468 (536)
T TIGR02340 389 HDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHA 468 (536)
T ss_pred HHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999988665 889999999999999999999999999999999 998751
Q ss_pred -C--------CCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 347 -D--------SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 347 -~--------~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+ ..++|||+.+|++.||++.|||||+.||.++|+.|+++|++||||
T Consensus 469 ~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~I 523 (536)
T TIGR02340 469 AAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRI 523 (536)
T ss_pred ccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 1 346899999999999999999999999999999999999999997
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-62 Score=509.76 Aligned_cols=344 Identities=19% Similarity=0.239 Sum_probs=297.8
Q ss_pred ChHHHHHHHHhcccccCC--CHHHHHHHHHHhcC------CchhHHHHHHHHHHhhccCce----------EEEEcCCCc
Q 016236 1 MAADAVVRNLDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKAL 62 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~~~~l~~Va~ts~~------~~~~~~~li~~a~~~vg~~g~----------I~v~~g~~~ 62 (392)
+|.+.++++|++++.|++ +.+.|.+||+||++ +++.|++++++|+.++++++. |....|++.
T Consensus 115 ~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~ 194 (515)
T cd03338 115 IAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTI 194 (515)
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCCh
Confidence 378899999999999986 77889999999999 458899999999999987653 444578887
Q ss_pred cceeEEEeeEEEecccccccccccccccceeecCceeeeccccc-------------CCH-----------HHHHHHHHH
Q 016236 63 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLP 118 (392)
Q Consensus 63 ~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~-----------~~~~~~l~~ 118 (392)
.+ +++++|++|+++|.||+|. |+ .++||+++++++++ +++ +++.++++.
T Consensus 195 ~d-s~lv~Giv~~k~~~~~~~~--p~----~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~ 267 (515)
T cd03338 195 ED-TELVDGLVFTQKASKKAGG--PT----RIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKK 267 (515)
T ss_pred hh-ceeeeeEEEeccccCcCCC--Cc----cccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 7999999999999997641 22 35566666655432 222 457788999
Q ss_pred HHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCcee
Q 016236 119 CMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198 (392)
Q Consensus 119 i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~ 198 (392)
+++.|+||||++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+
T Consensus 268 i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~~~-----~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~ 336 (515)
T cd03338 268 IKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVKDI-----EREEIEFICKTIGCKPVAS-----IDHFTEDKLGS 336 (515)
T ss_pred HHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEecC-----CHHHHHHHHHHHCCEEecc-----cccCCHhhCCC
Confidence 999999999999999666666666555554 689999987 7889999999999999997 88898999999
Q ss_pred eeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHH
Q 016236 199 CKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 275 (392)
Q Consensus 199 ~~~v~i~---~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl 275 (392)
|+.|++. +++++++.+|.++ +++|||+|||+|+.+++|+||+++||+
T Consensus 337 ~~~v~~~~~g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal 386 (515)
T cd03338 337 ADLVEEVSLGDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDAL 386 (515)
T ss_pred CceEEEEEECCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9999853 5578999988652 368999999999999999999999999
Q ss_pred HHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCC
Q 016236 276 HAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSS 349 (392)
Q Consensus 276 ~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~ 349 (392)
|++|+++++| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|++. ++.
T Consensus 387 ~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~ 466 (515)
T cd03338 387 CVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEK 466 (515)
T ss_pred HHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCC
Confidence 9999999999 9999999999999999988665 789999999999999999999999999999999 999762 456
Q ss_pred CeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 350 DLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 350 ~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
++|||+.+|+++||++.|||||+.||++++++|+++|++||+|
T Consensus 467 ~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~I 509 (515)
T cd03338 467 NAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKI 509 (515)
T ss_pred ccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999997
No 21
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.6e-62 Score=506.12 Aligned_cols=337 Identities=20% Similarity=0.231 Sum_probs=294.9
Q ss_pred ChHHHHHHHHhcccccCC----CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhccC-------ceEEEE--cCCC
Q 016236 1 MAADAVVRNLDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKA 61 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~----~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~-------g~I~v~--~g~~ 61 (392)
+|.+.++++|+++++|++ +.+.|.++|+||+++ .+.|++++++|+..+... ..|+|+ +|++
T Consensus 130 ~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs 209 (526)
T cd03339 130 QACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGR 209 (526)
T ss_pred HHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcC
Confidence 378899999999999985 467899999999984 267899999999887431 235554 7888
Q ss_pred ccceeEEEeeEEEecccccccccccccccceeecCceeeeccc-----------c--cCCHHH-----------HHHHHH
Q 016236 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNV-----------IRQASL 117 (392)
Q Consensus 62 ~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~-----------~--i~~~~~-----------~~~~l~ 117 (392)
.. ++++++|++|+++|.||+|+++ ++||+|+++++ + ++++++ +.++++
T Consensus 210 ~~-dS~~v~Givi~~~~~~~~m~~~-------~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~ 281 (526)
T cd03339 210 LE-DTKLVKGIVIDKDFSHPQMPKE-------VKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVE 281 (526)
T ss_pred HH-HcceeeeEEEecccCCCCCCce-------ecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 74 5999999999999999999653 45666666554 2 556655 778899
Q ss_pred HHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCce
Q 016236 118 PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG 197 (392)
Q Consensus 118 ~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG 197 (392)
.+++.|+||||++++|++.++++|..|+ +.+||++ ++++|+|||++|||+++++ ++++++++||
T Consensus 282 ~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~LG 345 (526)
T cd03339 282 QVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWV-----GGVEIELIAIATGGRIVPR-----FEDLSPEKLG 345 (526)
T ss_pred HHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhcc
Confidence 9999999999999999999999999764 6799998 5667999999999999997 8899999999
Q ss_pred eeeEEEE---e--cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHH
Q 016236 198 SCKRVIA---T--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKIT 272 (392)
Q Consensus 198 ~~~~v~i---~--~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~ 272 (392)
+|+.|+. + .++++||+||+++ +.|||+|||+|+.+++|.||+++
T Consensus 346 ~~~~v~~~~ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~ 394 (526)
T cd03339 346 KAGLVREISFGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLH 394 (526)
T ss_pred cCceEEEEEecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHH
Confidence 9999973 3 4678999999875 48899999999999999999999
Q ss_pred HHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----
Q 016236 273 NALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---- 345 (392)
Q Consensus 273 DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---- 345 (392)
||||++|+++++| +|||||++||+++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|+.
T Consensus 395 DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~ 474 (526)
T cd03339 395 DALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVK 474 (526)
T ss_pred HHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999999999998 9999999999999999988665 789999999999999999999999999999999 99973
Q ss_pred cCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 346 QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 346 ~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
.++.++|||+.+|++.||++.|||||+.||+++|+.|+++|++||||
T Consensus 475 ~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 521 (526)
T cd03339 475 EKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKI 521 (526)
T ss_pred cCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhh
Confidence 22457999999999999999999999999999999999999999997
No 22
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-61 Score=502.68 Aligned_cols=340 Identities=16% Similarity=0.186 Sum_probs=304.4
Q ss_pred ChHHHHHHHHhcccccCCC------HHHHHHHHHHhcC------CchhHHHHHHHHHHhhccCc---eEEEE--cCCCcc
Q 016236 1 MAADAVVRNLDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALY 63 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~------~~~l~~Va~ts~~------~~~~~~~li~~a~~~vg~~g---~I~v~--~g~~~~ 63 (392)
+|.+.++++|+++++|+++ .+.|.++|+|+++ +++.|++++++|+..+++++ .|++. .|++..
T Consensus 123 ~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ 202 (522)
T cd03340 123 KALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE 202 (522)
T ss_pred HHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh
Confidence 3788999999999999864 4669999999987 46899999999999998765 44443 688874
Q ss_pred ceeEEEeeEEEecccccccccccccccceeecCceeeeccccc-------------CCHHH-----------HHHHHHHH
Q 016236 64 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPC 119 (392)
Q Consensus 64 ~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~~~-----------~~~~l~~i 119 (392)
++++++|++|+++|.+|+|.+.|+ .++||+|+++++++ +++.+ +.+.++.+
T Consensus 203 -ds~lv~Giv~~k~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i 277 (522)
T cd03340 203 -DSQLVNGVAFKKTFSYAGFEQQPK----KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKI 277 (522)
T ss_pred -hceeeeeEEEecccCccccccCCc----cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999876665 58999999999874 44443 56778889
Q ss_pred HhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee
Q 016236 120 MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 199 (392)
Q Consensus 120 ~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~ 199 (392)
++.|.++|+++++|+|.++++|..++ |++++++ ++++|+|||++|||+++++ ++++++++||+|
T Consensus 278 ~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~~v-----~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~ 341 (522)
T cd03340 278 VKSGANVVLSKLPIGDLATQYFADRD------IFCAGRV-----PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTC 341 (522)
T ss_pred HhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEEeC-----CHHHHHHHHHHHCCEEeec-----cccCCccccccc
Confidence 99999999999999999999999763 7899988 6788999999999999998 889999999999
Q ss_pred eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHH
Q 016236 200 KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 276 (392)
Q Consensus 200 ~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~ 276 (392)
+.|+ ++++++++|.||..++ .+||++||+|+..++|.||+++||+|
T Consensus 342 ~~v~~~~ig~~~~~~~~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~i~Dal~ 390 (522)
T cd03340 342 GLFEERQVGGERYNIFTGCPKAK-------------------------------TCTIILRGGAEQFIEEAERSLHDAIM 390 (522)
T ss_pred eEEEEEEECCEEEEEEECCCCCc-------------------------------eEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9998 6788999999998653 88999999999999999999999999
Q ss_pred HHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-C
Q 016236 277 AVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-S 349 (392)
Q Consensus 277 a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~-~ 349 (392)
++|+++++| +|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|++. ++ .
T Consensus 391 ~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~ 470 (522)
T cd03340 391 IVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGK 470 (522)
T ss_pred HHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCC
Confidence 999999997 9999999999999999988665 889999999999999999999999999999999 999762 33 5
Q ss_pred CeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 350 DLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 350 ~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
++|||+.+|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 471 ~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 471 WYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred eeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 7999999999999999999999999999999999999999996
No 23
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-61 Score=501.77 Aligned_cols=343 Identities=19% Similarity=0.268 Sum_probs=296.1
Q ss_pred ChHHHHHHHHhcccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhcc---Cce-----EEEE--cCCCc
Q 016236 1 MAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF--DRKAL 62 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~---~g~-----I~v~--~g~~~ 62 (392)
+|++.++++|+++++|++ +.+.|.+||+||+++ .+.|++++++|+..+++ ++. |++. .|++.
T Consensus 116 ~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~ 195 (517)
T TIGR02342 116 IAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI 195 (517)
T ss_pred HHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh
Confidence 378899999999999987 778899999999984 35679999999999975 233 4443 56665
Q ss_pred cceeEEEeeEEEecccccc-cccccccccceeecCceeeecccccC-------------CH-----------HHHHHHHH
Q 016236 63 YNELNFVKGMKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKIS-------------NS-----------NVIRQASL 117 (392)
Q Consensus 63 ~~~~~~v~G~~~d~g~~s~-~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~-----------~~~~~~l~ 117 (392)
+++++++|++|+++|.++ .|+ ..++||+|++++++++ ++ +++.++++
T Consensus 196 -~ds~li~Givl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~ 267 (517)
T TIGR02342 196 -DDTELIEGLVFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVK 267 (517)
T ss_pred -hhcEEEeeEEEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999983 442 2467788877776432 21 35678899
Q ss_pred HHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCce
Q 016236 118 PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG 197 (392)
Q Consensus 118 ~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG 197 (392)
++++.|+||||++++|++++++.++.|.+.+ .+|++||++ ++++|+|||++|||+++++ ++++++++||
T Consensus 268 ~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~~v-----~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG 336 (517)
T TIGR02342 268 KIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVKDI-----EREEVEFICKTIGCKPIAS-----IDHFTADKLG 336 (517)
T ss_pred HHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEecC-----CHHHHHHHHHHHCCEEEcc-----hhhcCcccCc
Confidence 9999999999999999766666666666655 689999988 8889999999999999998 8889999999
Q ss_pred eeeEEE-E--ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHH
Q 016236 198 SCKRVI-A--TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNA 274 (392)
Q Consensus 198 ~~~~v~-i--~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DA 274 (392)
+|+.|+ + +++.++++.+|+++ |++|||+|||+|+.+++|+||+++||
T Consensus 337 ~~~~v~~~~~~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DA 386 (517)
T TIGR02342 337 SAELVEEVTTDGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDA 386 (517)
T ss_pred CCceEEEEEECCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999998 3 45667888888653 36899999999999999999999999
Q ss_pred HHHHHHHHHc-CcccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCC
Q 016236 275 LHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDS 348 (392)
Q Consensus 275 l~a~r~al~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~ 348 (392)
+|++|+++++ ++|||||++||++|.+|++++.+ ++++|+++++|++||+.||++||+|||+||.++ .+|++ +++
T Consensus 387 l~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 466 (517)
T TIGR02342 387 LCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGE 466 (517)
T ss_pred HHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 59999999999999999988665 889999999999999999999999999999999 99976 245
Q ss_pred CCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 349 SDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 349 ~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
.++|||+.+|+++||++.|||||+.||++++++|+++|++||||
T Consensus 467 ~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~i 510 (517)
T TIGR02342 467 KYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKI 510 (517)
T ss_pred CccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999999999997
No 24
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-61 Score=500.56 Aligned_cols=337 Identities=19% Similarity=0.213 Sum_probs=293.7
Q ss_pred ChHHHHHHHHhcccccCC----CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhcc--Cc-----eEEEE--cCCC
Q 016236 1 MAADAVVRNLDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE--ND-----LITIF--DRKA 61 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~----~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~--~g-----~I~v~--~g~~ 61 (392)
+|++.++++|+++++|+. +.+.|.++|+|++++ .+.|++++++|+..+.. .+ .|.++ .|++
T Consensus 134 ~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs 213 (532)
T TIGR02343 134 VAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGS 213 (532)
T ss_pred HHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCC
Confidence 378899999999999875 357899999999984 35788889999988743 11 34553 7888
Q ss_pred ccceeEEEeeEEEecccccccccccccccceeecCceeeeccc-----------c--cCCHHHH-----------HHHHH
Q 016236 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASL 117 (392)
Q Consensus 62 ~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~-----------~--i~~~~~~-----------~~~l~ 117 (392)
+.| +++++|++|+++|.+|+|++ .++||+|+++++ + +++++++ .++++
T Consensus 214 ~~d-s~~v~Gi~i~~~~~~~~m~~-------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~ 285 (532)
T TIGR02343 214 LED-TKLIKGIIIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMID 285 (532)
T ss_pred ccc-ceeEeeEEEecCcCCCCCCe-------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 754 79999999999999999965 345666666654 2 5666655 78899
Q ss_pred HHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCce
Q 016236 118 PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG 197 (392)
Q Consensus 118 ~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG 197 (392)
.+++.|+||||++++|++.++++|..|+ +.+||++ ++++|+|||++|||+++++ ++++++++||
T Consensus 286 ~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~~-----~~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG 349 (532)
T TIGR02343 286 DIKKSGANIVICQWGFDDEANHLLLQND------LPAVRWV-----GGHELELIAIATGGRIVPR-----FEELSEDKLG 349 (532)
T ss_pred HHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEcC-----CHHHHHHHHHHhCCEEecc-----cccCCHhHCc
Confidence 9999999999999999999999999874 6789988 5667999999999999998 8899999999
Q ss_pred eeeEEE---Eec--ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHH
Q 016236 198 SCKRVI---ATM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKIT 272 (392)
Q Consensus 198 ~~~~v~---i~~--~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~ 272 (392)
+|++|+ ++. ++++++++|++++ +|||+|||+|+.+++|+||+++
T Consensus 350 ~a~~v~~~~ig~~~~~~~~i~~~~~~~-------------------------------~~TIllrG~t~~~l~E~er~l~ 398 (532)
T TIGR02343 350 KAGLVREISFGTTKDRMLVIEQCKNSK-------------------------------AVTIFIRGGNKMIIEEAKRSIH 398 (532)
T ss_pred ccceEEEEEecCCcceEEEEECCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHH
Confidence 999997 333 5789999998764 8899999999999999999999
Q ss_pred HHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----
Q 016236 273 NALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---- 345 (392)
Q Consensus 273 DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---- 345 (392)
||++++|++++++ +|||||++||+++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .++++
T Consensus 399 DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~ 478 (532)
T TIGR02343 399 DALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMK 478 (532)
T ss_pred HHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999999999985 9999999999999999988665 788999999999999999999999999999999 99874
Q ss_pred cCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 346 QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 346 ~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
.+..++|||+.+|+++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 479 ~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~i 525 (532)
T TIGR02343 479 EKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKI 525 (532)
T ss_pred cCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 12457999999999999999999999999999999999999999986
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.8e-61 Score=498.35 Aligned_cols=340 Identities=16% Similarity=0.168 Sum_probs=300.7
Q ss_pred ChHHHHHHHHhcccccCC-----CHHHHHHHHHHhcC------CchhHHHHHHHHHHhhccCc----eEEEE--cCCCcc
Q 016236 1 MAADAVVRNLDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITIF--DRKALY 63 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~-----~~~~l~~Va~ts~~------~~~~~~~li~~a~~~vg~~g----~I~v~--~g~~~~ 63 (392)
+|.+.++++|+++++|++ +.+.|.+||+||++ +++.|++++++|+.++++++ .|.+. .|++..
T Consensus 124 ~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ 203 (522)
T TIGR02345 124 EALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQ 203 (522)
T ss_pred HHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHH
Confidence 378899999999999997 45789999999987 56899999999999998652 23332 788875
Q ss_pred ceeEEEeeEEEecccccccccccccccceeecCceeeecccccC-------------CHHH-----------HHHHHHHH
Q 016236 64 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPC 119 (392)
Q Consensus 64 ~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~~-----------~~~~l~~i 119 (392)
| +++++|++|+++|.+|||.+.|+ .++||+|+++|++++ ++++ +...++.+
T Consensus 204 d-s~~v~Giv~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i 278 (522)
T TIGR02345 204 D-SVLVNGVAFKKTFSYAGFEQQPK----KFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKI 278 (522)
T ss_pred h-cceecceEEecccCccccccCCc----eeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 88999999999999999977664 699999999998764 2333 34556678
Q ss_pred HhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee
Q 016236 120 MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 199 (392)
Q Consensus 120 ~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~ 199 (392)
.+.|.++++++++|++.++++|..+ +|++++++ .++++++||++|||+++++ ++++++++||+|
T Consensus 279 ~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~~v-----~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~ 342 (522)
T TIGR02345 279 VESGANVVLSKLPIGDLATQYFADH------NIFCAGRV-----SDEDLKRVVKACGGSIQST-----TSDLEADVLGTC 342 (522)
T ss_pred HhcCCcEEEeCCCccHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCeEEcc-----hhhCChhhccCC
Confidence 8899999999999999999999876 48999998 6778999999999999998 788999999999
Q ss_pred eEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHH
Q 016236 200 KRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 276 (392)
Q Consensus 200 ~~v~i---~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~ 276 (392)
+.|+. +++++++|.||++++ +|||+|||+|+.+++|+||+++||+|
T Consensus 343 ~~ie~~~~~~~r~~~~~g~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~ 391 (522)
T TIGR02345 343 ALFEERQIGSERYNYFTGCPHAK-------------------------------TCTIILRGGAEQFIEEAERSLHDAIM 391 (522)
T ss_pred ceEEEEEECCeEEEEEEcCCCCc-------------------------------eEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99974 577899999987653 89999999999999999999999999
Q ss_pred HHHHHHHc-CcccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCC
Q 016236 277 AVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSD 350 (392)
Q Consensus 277 a~r~al~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~ 350 (392)
++|+++++ |+|||||++|++++.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. +..+
T Consensus 392 ~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~ 471 (522)
T TIGR02345 392 IVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKW 471 (522)
T ss_pred HHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCc
Confidence 99999998 59999999999999999988655 889999999999999999999999999999999 999762 4457
Q ss_pred eeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 351 LGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 351 ~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 472 ~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (522)
T TIGR02345 472 YGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513 (522)
T ss_pred cceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999986
No 26
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.5e-61 Score=497.96 Aligned_cols=337 Identities=14% Similarity=0.172 Sum_probs=298.6
Q ss_pred ChHHHHHHHHhcccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhccCc-----------eEEEE--cC
Q 016236 1 MAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DR 59 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~g-----------~I~v~--~g 59 (392)
+|.+.++++|+++++|++ +.+.|.++|+|++++ ++.|++++++|+..+++++ .|+|+ +|
T Consensus 123 ~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~G 202 (525)
T TIGR02344 123 KALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPG 202 (525)
T ss_pred HHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecC
Confidence 378899999999999987 567799999988764 5889999999999998653 25565 58
Q ss_pred CCccceeEEEeeEEEecccccccccccccccceeecCceeeecccccCC-------------HHHHHHHHH---------
Q 016236 60 KALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL--------- 117 (392)
Q Consensus 60 ~~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~~~~~l~--------- 117 (392)
+++.| +++++|+.|++++.++.| ..+++||+|++++++++. ++++.++++
T Consensus 203 g~~~d-S~lv~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~ 274 (525)
T TIGR02344 203 GDIED-SCVLKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLM 274 (525)
T ss_pred CChHh-cCcccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHH
Confidence 88855 999999999999887765 337899999999998754 466666554
Q ss_pred --HHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCC
Q 016236 118 --PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLK 195 (392)
Q Consensus 118 --~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~ 195 (392)
++.+.|.+|||+.+++++.++++|..+ +|++++++ ++++|+|||++|||+++++ ++++++++
T Consensus 275 v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~ 338 (525)
T TIGR02344 275 CEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIRRV-----RKTDNNRIARACGATIVNR-----PEELRESD 338 (525)
T ss_pred HHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEecC-----CHHHHHHHHHHhCCeEecc-----hhhCCHhh
Confidence 788889888888899999999998864 58999988 7889999999999999998 88899999
Q ss_pred cee-eeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHH
Q 016236 196 LGS-CKRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKI 271 (392)
Q Consensus 196 LG~-~~~v~i---~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i 271 (392)
||+ |+.|++ ++++|++|+||++++ .|||+|||+|+.+++|.||++
T Consensus 339 lG~~~~~v~~~~ig~~~~~~~~g~~~~~-------------------------------~~TIlLrG~t~~~l~E~er~l 387 (525)
T TIGR02344 339 VGTGCGLFEVKKIGDEYFTFFTECKDPK-------------------------------ACTILLRGASKDVLNEIERNL 387 (525)
T ss_pred cCCcCCEEEEEEECCeEEEEEEcCCCCC-------------------------------EEEEEEEcCCHHHHHHHHHHH
Confidence 999 998876 668899999998764 899999999999999999999
Q ss_pred HHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc--
Q 016236 272 TNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-- 346 (392)
Q Consensus 272 ~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~-- 346 (392)
+||+|+++++++++ +|||||++||++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++.
T Consensus 388 ~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~ 467 (525)
T TIGR02344 388 QDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHA 467 (525)
T ss_pred HHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999985 9999999999999999988665 889999999999999999999999999999999 999762
Q ss_pred -C-CCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 347 -D-SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 347 -~-~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+ +.++|||+.+|++.||++.|||||+.||+++|+.|+++|++||||
T Consensus 468 ~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 515 (525)
T TIGR02344 468 QEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRI 515 (525)
T ss_pred ccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 2 457999999999999999999999999999999999999999996
No 27
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.9e-61 Score=499.93 Aligned_cols=344 Identities=15% Similarity=0.177 Sum_probs=288.0
Q ss_pred ChHHHHHHHHhcccc-cCC---CHHHHHHHHHHhcCC-----chhHHHHHHHHHHhhccCc--eE-----EEE--cCCCc
Q 016236 1 MAADAVVRNLDCQAR-KIT---TFEEIAQVGTTAANG-----DGEIGELIAKVFEKGWEND--LI-----TIF--DRKAL 62 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~-~v~---~~~~l~~Va~ts~~~-----~~~~~~li~~a~~~vg~~g--~I-----~v~--~g~~~ 62 (392)
+|++.++++|+++++ |+. +.+.|.++|++|+++ ++.|++++++|+..+++++ .+ .+. .|++.
T Consensus 125 ~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~ 204 (531)
T TIGR02346 125 QALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSI 204 (531)
T ss_pred HHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCCh
Confidence 378899999999986 764 367899999988853 7899999999999998654 33 332 68877
Q ss_pred cceeEEEeeEEEecc---------------ccccccccccc-ccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCE
Q 016236 63 YNELNFVKGMKLEWG---------------LKSPYFFTHKN-KKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSL 126 (392)
Q Consensus 63 ~~~~~~v~G~~~d~g---------------~~s~~~~~~~~-~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~l 126 (392)
. ++++++|++|+++ |.+|++.++++ .+.+.+.+|..+....+. ..+++.++++.+++.|+||
T Consensus 205 ~-ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-e~~~i~~~l~~i~~~g~~l 282 (531)
T TIGR02346 205 S-NSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKG-EENQIEAYIKAIADSGVNV 282 (531)
T ss_pred h-hceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHH-HHHHHHHHHHHHHHcCCcE
Confidence 4 7999999999999 33333333333 222333333333211111 1345788899999999999
Q ss_pred EEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEE--
Q 016236 127 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 204 (392)
Q Consensus 127 vi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i-- 204 (392)
||++++|+|.++++|..+ +|+|||+|+ +.+|+|||.+|||+++++ ++++++++||+|++|++
T Consensus 283 vi~~~~I~d~~~~~l~~~------~I~av~~~~-----~~~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ 346 (531)
T TIGR02346 283 IVTGGSVGDMALHYCEKY------NIMVLKIPS-----KFELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSE 346 (531)
T ss_pred EEECCCcCHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEE
Confidence 999999999999988854 589999994 557999999999999987 78899999999999974
Q ss_pred -ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHH
Q 016236 205 -TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 283 (392)
Q Consensus 205 -~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~ 283 (392)
+++++++|.++.. .+++|||+|||+|+.+++|+||+++||+|++|++++
T Consensus 347 ig~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~ 396 (531)
T TIGR02346 347 IGGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVK 396 (531)
T ss_pred ECCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678899987652 246999999999999999999999999999999999
Q ss_pred cC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCC
Q 016236 284 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR 357 (392)
Q Consensus 284 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~ 357 (392)
+| +|||||++||+++.+|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|+.. ++.++|||+.+
T Consensus 397 ~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~ 476 (531)
T TIGR02346 397 DNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEA 476 (531)
T ss_pred CCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeC
Confidence 99 9999999999999999988665 789999999999999999999999999999999 999753 45578999999
Q ss_pred Cc--cccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 358 GN--YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 358 g~--~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
|+ ++||++.|||||+.||+++|++|+++|++||||
T Consensus 477 ~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (531)
T TIGR02346 477 ESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRV 513 (531)
T ss_pred CCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 99 599999999999999999999999999999997
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.7e-60 Score=489.21 Aligned_cols=336 Identities=18% Similarity=0.240 Sum_probs=295.7
Q ss_pred ChHHHHHHHHhcccccCC-----CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhccC---ceEEEE--cCCCccc
Q 016236 1 MAADAVVRNLDCQARKIT-----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYN 64 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~-----~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~---g~I~v~--~g~~~~~ 64 (392)
+|.+.++++|+++++|++ +.+.|.++|+|++++ ++.|++++++|+..++.. ..|.+. +|+++ +
T Consensus 122 ~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~-~ 200 (517)
T cd03336 122 MATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSL-K 200 (517)
T ss_pred HHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCc-c
Confidence 378899999999999984 246799999988764 588999999999998632 235554 68888 4
Q ss_pred eeEEEeeEEEecccccccccccccccceeecCceeeecccccC--------------CHHHH-----------HHHHHHH
Q 016236 65 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVI-----------RQASLPC 119 (392)
Q Consensus 65 ~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~--------------~~~~~-----------~~~l~~i 119 (392)
++++++|+++++++.++ + ...++||+|+++|++++ +++++ ...++.+
T Consensus 201 ds~l~~G~v~~~~~~~~-~-------~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I 272 (517)
T cd03336 201 DSYLDEGFLLDKKIGVN-Q-------PKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKI 272 (517)
T ss_pred ceEEEeeEEEecccCCC-C-------CCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999986543 2 33789999999999764 45544 3447778
Q ss_pred HhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee
Q 016236 120 MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 199 (392)
Q Consensus 120 ~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~ 199 (392)
++.|.+++++++.|++.++++|..+ +|++||+| ++++|+|||++|||+++++ ++++++++||+|
T Consensus 273 ~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v-----~~~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~ 336 (517)
T cd03336 273 LKHGINCFINRQLIYNYPEQLFADA------GIMAIEHA-----DFDGVERLALVTGGEIAST-----FDHPELVKLGTC 336 (517)
T ss_pred HhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCEEecc-----cCCCCccccccc
Confidence 8999999999999999999999876 48999999 5667999999999999997 889999999999
Q ss_pred eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHH
Q 016236 200 KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 276 (392)
Q Consensus 200 ~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~ 276 (392)
+.|+ ++++++++|.+|+++ ++|||+|||+|+.+++|.||+++||+|
T Consensus 337 ~~v~~~~ig~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~ 385 (517)
T cd03336 337 KLIEEIMIGEDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALC 385 (517)
T ss_pred ceEEEEEECCeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9996 467889999998764 589999999999999999999999999
Q ss_pred HHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCC
Q 016236 277 AVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSD 350 (392)
Q Consensus 277 a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~ 350 (392)
++|+++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ +++.+
T Consensus 386 ~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~ 465 (517)
T cd03336 386 VLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTT 465 (517)
T ss_pred HHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Confidence 999999998 9999999999999999988765 889999999999999999999999999999999 99976 24567
Q ss_pred eeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 351 LGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 351 ~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|||+.+|++.||++.|||||+.||+++|+.|+++|++||+|
T Consensus 466 ~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 507 (517)
T cd03336 466 AGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRV 507 (517)
T ss_pred eeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999986
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3.6e-60 Score=493.85 Aligned_cols=336 Identities=18% Similarity=0.238 Sum_probs=295.6
Q ss_pred ChHHHHHHHHhcccccCCC-----HHHHHHHHHHhcCC------chhHHHHHHHHHHhhccC---ceEEEE--cCCCccc
Q 016236 1 MAADAVVRNLDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYN 64 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~-----~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~---g~I~v~--~g~~~~~ 64 (392)
+|++.++++|+++++|+++ .+.|.+||+|++++ .+.|++++++|+..+... ..|.+. +|+++ +
T Consensus 134 ~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi-~ 212 (533)
T PTZ00212 134 MALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTL-R 212 (533)
T ss_pred HHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCc-c
Confidence 3788999999999999864 56799999988874 378999999999988432 234443 78888 4
Q ss_pred eeEEEeeEEEecccccccccccccccceeecCceeeeccccc--------------CCHHHH-----------HHHHHHH
Q 016236 65 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVI-----------RQASLPC 119 (392)
Q Consensus 65 ~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i--------------~~~~~~-----------~~~l~~i 119 (392)
++++++|+++++++.++ | ..+++||+|+++|+++ ++++++ ...++.+
T Consensus 213 ds~lv~G~v~~~~~~~~-~-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~I 284 (533)
T PTZ00212 213 DSYLEDGFILEKKIGVG-Q-------PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKI 284 (533)
T ss_pred ccEEEEeEEEecccCCC-C-------CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999986543 2 3479999999999986 555543 2346778
Q ss_pred HhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee
Q 016236 120 MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 199 (392)
Q Consensus 120 ~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~ 199 (392)
++.|.++++++++|++.++++|..+ +|++||++ ++++++|||++|||+++++ ++++++++||+|
T Consensus 285 i~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr~v-----~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~ 348 (533)
T PTZ00212 285 LAHGCNVFINRQLIYNYPEQLFAEA------GIMAIEHA-----DFDGMERLAAALGAEIVST-----FDTPEKVKLGHC 348 (533)
T ss_pred HhcCCeEEEeCCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeec-----CCCCCHHHccCC
Confidence 8999999999999999999999876 48999988 5778999999999999998 888999999999
Q ss_pred eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHH
Q 016236 200 KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 276 (392)
Q Consensus 200 ~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~ 276 (392)
+.|+ +++++|++|++|..+ ++|||+|||+|+.+++|+||+++||||
T Consensus 349 ~~v~~~~ig~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~DAl~ 397 (533)
T PTZ00212 349 DLIEEIMIGEDKLIRFSGCAKG-------------------------------EACTIVLRGASTHILDEAERSLHDALC 397 (533)
T ss_pred ceEEEEEECCeEEEEEEccCCC-------------------------------CEEEEEEECCChhHHHHHHHHHHHHHH
Confidence 9998 788899999998754 589999999999999999999999999
Q ss_pred HHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCC
Q 016236 277 AVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSD 350 (392)
Q Consensus 277 a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~ 350 (392)
++|+++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ +++.+
T Consensus 398 vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~ 477 (533)
T PTZ00212 398 VLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKT 477 (533)
T ss_pred HHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCc
Confidence 999999998 9999999999999999998765 889999999999999999999999999999999 99975 34567
Q ss_pred eeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 351 LGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 351 ~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|||+.+|++.||++.|||||+.||+++|+.|+++|++||||
T Consensus 478 ~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 519 (533)
T PTZ00212 478 AGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRV 519 (533)
T ss_pred cceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999996
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-59 Score=484.47 Aligned_cols=320 Identities=14% Similarity=0.182 Sum_probs=286.4
Q ss_pred ChHHHHHHHHhcccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhccC--c---------eEEEE--cC
Q 016236 1 MAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D---------LITIF--DR 59 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~--g---------~I~v~--~g 59 (392)
+|.+.++++|+++++|++ +.+.|.++|+|++++ ++.|++++++|+..++++ + .|+|+ +|
T Consensus 123 ~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~G 202 (480)
T cd03337 123 KALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPG 202 (480)
T ss_pred HHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecC
Confidence 378899999999999987 778899999999983 468999999999999754 2 25555 58
Q ss_pred CCccceeEEEeeEEEecccccccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhh
Q 016236 60 KALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLG 139 (392)
Q Consensus 60 ~~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~ 139 (392)
++.. ++++++|++|++++.||.|+ .+++||+|++++++++. |||++++|++.+++
T Consensus 203 gs~~-ds~li~Gvvi~k~~~~~~m~-------~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~ 257 (480)
T cd03337 203 GEIE-DSRVLDGVMLNKDVTHPKMR-------RRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQH 257 (480)
T ss_pred CCHH-hcccccceEEeccCCCCCCC-------cEecCCCEEEEecCcce-----------------EEEeCCCccHHHHH
Confidence 8874 49999999999999998663 37899999999999876 89999999999999
Q ss_pred hHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee-eEEE---EecceEEEEcCC
Q 016236 140 DIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC-KRVI---ATMDNVVIIGGS 215 (392)
Q Consensus 140 ~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~-~~v~---i~~~~~~~~~g~ 215 (392)
+|..| +|++|++. ++++|+|||++|||+++++ ++++++++||+| +.++ ++++++++|++|
T Consensus 258 ~L~~~------~I~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~ 321 (480)
T cd03337 258 YLVKA------GITALRRV-----RKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITEC 321 (480)
T ss_pred HHHHC------CcEEEEeC-----CHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcC
Confidence 99987 48999988 7888999999999999998 788889999994 4544 256788999999
Q ss_pred CChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC-cccCCcHHH
Q 016236 216 GELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVAL 294 (392)
Q Consensus 216 ~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g-vVpGGGa~e 294 (392)
+++ +.|||+|||+|+.+++|.||+++||+++++++++++ +|||||++|
T Consensus 322 ~~~-------------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E 370 (480)
T cd03337 322 KDP-------------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATE 370 (480)
T ss_pred CCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHH
Confidence 875 489999999999999999999999999999999995 999999999
Q ss_pred HHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeEeCCCCccccccccCC
Q 016236 295 LYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGYNPARGNYVDMFKCGD 368 (392)
Q Consensus 295 ~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~-~~~~G~d~~~g~~~dm~~~gI 368 (392)
|++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|+|+.+|++.||++.||
T Consensus 371 ~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV 450 (480)
T cd03337 371 MAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGI 450 (480)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccC
Confidence 9999999988765 889999999999999999999999999999999 999762 3 457999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHhcC
Q 016236 369 VDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 369 ~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
|||+.||+++|+.|+++|++||||
T Consensus 451 ~dp~~vk~~~l~~A~e~a~~iL~i 474 (480)
T cd03337 451 WDPLAVKAQTYKTAIEAACMLLRI 474 (480)
T ss_pred eEcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999997
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.4e-59 Score=478.71 Aligned_cols=322 Identities=18% Similarity=0.217 Sum_probs=283.3
Q ss_pred ChHHHHHHHHhccccc-CC---CHHHHHHHHHHhcC-----CchhHHHHHHHHHHhhccC--ceE-----EEE--cCCCc
Q 016236 1 MAADAVVRNLDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLI-----TIF--DRKAL 62 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~-v~---~~~~l~~Va~ts~~-----~~~~~~~li~~a~~~vg~~--g~I-----~v~--~g~~~ 62 (392)
+|++.++++|++++.+ +. +.+.+.++++++++ +++.|++++++|+..++++ |.+ .|. +|++.
T Consensus 115 ~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~ 194 (472)
T cd03341 115 KALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSL 194 (472)
T ss_pred HHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCc
Confidence 3788999999999865 53 45678899998874 3678999999999999865 543 332 68887
Q ss_pred cceeEEEeeEEEecccccccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHH
Q 016236 63 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIA 142 (392)
Q Consensus 63 ~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~ 142 (392)
. ++++++|++|++.+.. +..+++||+|++++++++. |+||||++++|++.++++|.
T Consensus 195 ~-ds~lv~Giv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~ 250 (472)
T cd03341 195 E-DSKVVRGMVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCN 250 (472)
T ss_pred c-cceEEeeEEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHH
Confidence 5 4899999999875321 2257899999999999987 89999999999999999976
Q ss_pred hhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChh
Q 016236 143 TDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELV 219 (392)
Q Consensus 143 ~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~g~~~~~ 219 (392)
. .+|++||+| ++++|+|||++|||+++++ ++++++++||+|++|++. +++|++|.+|++.
T Consensus 251 ~------~~I~av~~~-----~~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~- 313 (472)
T cd03341 251 K------YGIMVIKIN-----SKFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED- 313 (472)
T ss_pred H------CCeEEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC-
Confidence 4 358999999 5778999999999999998 788889999999999865 4889999988651
Q ss_pred hHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHH
Q 016236 220 DIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYAS 298 (392)
Q Consensus 220 ~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g-vVpGGGa~e~~~s 298 (392)
+++|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|++++
T Consensus 314 -----------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls 364 (472)
T cd03341 314 -----------------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELA 364 (472)
T ss_pred -----------------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHH
Confidence 2589999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC--ccccccccCCccc
Q 016236 299 KELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG--NYVDMFKCGDVDP 371 (392)
Q Consensus 299 ~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~g--~~~dm~~~gI~Dp 371 (392)
.+|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|+. +++.++|||+.+| ++.||++.|||||
T Consensus 365 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp 444 (472)
T cd03341 365 KKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDH 444 (472)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceec
Confidence 999988654 789999999999999999999999999999999 99865 3355799999999 9999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhcC
Q 016236 372 LKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 372 ~~v~~~al~~A~~~a~~iL~i 392 (392)
+.||+++|++|+++|++||||
T Consensus 445 ~~vk~~~l~~A~e~a~~iL~i 465 (472)
T cd03341 445 LATKKWAIKLATEAAVTVLRV 465 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999997
No 32
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-58 Score=474.35 Aligned_cols=320 Identities=29% Similarity=0.398 Sum_probs=289.0
Q ss_pred ChHHHHHHHHhccccc--CCCHHHHHHHHHHhcC------CchhHHHHHHHHHHhhcc------CceEEEE--cCCCccc
Q 016236 1 MAADAVVRNLDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYN 64 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~--v~~~~~l~~Va~ts~~------~~~~~~~li~~a~~~vg~------~g~I~v~--~g~~~~~ 64 (392)
+|.+.++++|+++++| +.+.+.+.+||+|+++ +++.+++++++|+..+++ .+.|+|+ +|++. .
T Consensus 115 ~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~-~ 193 (464)
T cd00309 115 KAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSL-E 193 (464)
T ss_pred HHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCc-c
Confidence 3778999999999999 5578899999999998 688999999999999987 5778886 57766 4
Q ss_pred eeEEEeeEEEecccccccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhh
Q 016236 65 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATD 144 (392)
Q Consensus 65 ~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n 144 (392)
++++++|++|+++|.+|+|+ .+++||+|++++++++. |+|+.++|++.++++|..+
T Consensus 194 ds~li~Gi~~~~~~~~~~m~-------~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~~ 249 (464)
T cd00309 194 DSELVVGMVFDKGYLSPYMP-------KRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAKL 249 (464)
T ss_pred cceeeeeEEEecCCCCCCCc-------eeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHHC
Confidence 58999999999999999982 37999999999999987 6666677999999999874
Q ss_pred ccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEE---ecceEEEEcCCCChhhH
Q 016236 145 FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDI 221 (392)
Q Consensus 145 ~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i---~~~~~~~~~g~~~~~~i 221 (392)
+|++|+++ ++++|+|||++|||+++++ ++++++++||+|+.|++ +++++++|.+++.+
T Consensus 250 ------~I~~v~~~-----~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~--- 310 (464)
T cd00309 250 ------GIMAVRRV-----RKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG--- 310 (464)
T ss_pred ------CeEEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC---
Confidence 58999998 7889999999999999998 78888999999999985 45678888887654
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHc-CcccCCcHHHHHHHHH
Q 016236 222 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKE 300 (392)
Q Consensus 222 ~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~-gvVpGGGa~e~~~s~~ 300 (392)
+.|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++|++++..
T Consensus 311 ----------------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~ 362 (464)
T cd00309 311 ----------------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKA 362 (464)
T ss_pred ----------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHH
Confidence 48999999999999999999999999999999999 5999999999999999
Q ss_pred HHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCCccccccH
Q 016236 301 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHV 375 (392)
Q Consensus 301 L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~ 375 (392)
|+++... ++++|+++++|++||+.||++|++|||+|+.++ .+|++. +..++|+|..+|++.||++.|||||+.||
T Consensus 363 L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk 442 (464)
T cd00309 363 LEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVK 442 (464)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHH
Confidence 9988765 889999999999999999999999999999999 999763 23468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 016236 376 PSEFAKATSMISLKNAI 392 (392)
Q Consensus 376 ~~al~~A~~~a~~iL~i 392 (392)
+++++.|+++|++||+|
T Consensus 443 ~~~l~~A~e~a~~iL~i 459 (464)
T cd00309 443 RQALKSATEAASLILTI 459 (464)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 99999999999999986
No 33
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-58 Score=480.80 Aligned_cols=336 Identities=19% Similarity=0.223 Sum_probs=292.3
Q ss_pred ChHHHHHHHHhcccccCCC-----HHHHHHHHHHhcCC------chhHHHHHHHHHHhhccC---ceEEEE--cCCCccc
Q 016236 1 MAADAVVRNLDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYN 64 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~~-----~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~---g~I~v~--~g~~~~~ 64 (392)
+|.+.++++|+++++|+++ .+.|.+||+|++++ .+.|+++.++|+..+... ..|.+. +|+++ +
T Consensus 123 ~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~-~ 201 (519)
T TIGR02341 123 RATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSL-N 201 (519)
T ss_pred HHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCc-c
Confidence 3788999999999999853 46799999999984 367888999999887421 236665 68887 5
Q ss_pred eeEEEeeEEEecccccccccccccccceeecCceeeecccccCC--------------HHHH-----------HHHHHHH
Q 016236 65 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVI-----------RQASLPC 119 (392)
Q Consensus 65 ~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~--------------~~~~-----------~~~l~~i 119 (392)
++++++|+++++++.++ + ...++||+|+++|++++. ++++ ..+++.+
T Consensus 202 ~s~l~~G~v~~~~~~~~-~-------~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I 273 (519)
T TIGR02341 202 DSYLDEGFLLEKKIGVN-Q-------PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKI 273 (519)
T ss_pred cceEEeeEEEeccCCCC-C-------ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999986442 2 237899999999987653 3223 2346778
Q ss_pred HhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee
Q 016236 120 MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 199 (392)
Q Consensus 120 ~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~ 199 (392)
++.|.+++++++.|++.++++|..+ +|+++|+| ++.+|+|||++|||+++++ ++++++++||+|
T Consensus 274 ~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~-----~~~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~ 337 (519)
T TIGR02341 274 LKHNINCFINRQLIYNYPEQLFADA------GVMAIEHA-----DFEGIERLALVTGGEIVST-----FDHPELVKLGSC 337 (519)
T ss_pred HHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCEEecc-----cccCCccccccC
Confidence 8999999999999999999998875 58999999 4668999999999999998 888999999999
Q ss_pred eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHH
Q 016236 200 KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 276 (392)
Q Consensus 200 ~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~ 276 (392)
+.|+ ++++++++|.+|+++ ++|||+|||+|+.+++|+||+++||+|
T Consensus 338 ~~v~~~~ig~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~ 386 (519)
T TIGR02341 338 DLIEEIMIGEDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALC 386 (519)
T ss_pred ceEEEEEECCEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9996 467889999999864 589999999999999999999999999
Q ss_pred HHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCC
Q 016236 277 AVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSD 350 (392)
Q Consensus 277 a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~ 350 (392)
++|++++++ +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+||.++ .+|++. +..+
T Consensus 387 ~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~ 466 (519)
T TIGR02341 387 VLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHT 466 (519)
T ss_pred HHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCc
Confidence 999999985 9999999999999999988665 889999999999999999999999999999999 999762 4567
Q ss_pred eeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 351 LGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 351 ~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|||+.+|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 467 ~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 467 MGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred cceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999986
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-56 Score=425.09 Aligned_cols=340 Identities=17% Similarity=0.179 Sum_probs=301.8
Q ss_pred ChHHHHHHHHhcccccCC--C----HHHHHHHHHHhcCC------chhHHHHHHHHHHhhccC---ceEEE--EcCCCcc
Q 016236 1 MAADAVVRNLDCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITI--FDRKALY 63 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~----~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~---g~I~v--~~g~~~~ 63 (392)
+|...+++.|+++++.++ + ++.|.+.|.|++++ .++|++|+++|+..++.+ ..|-| .+|++++
T Consensus 127 ka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~ 206 (543)
T KOG0361|consen 127 KARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAME 206 (543)
T ss_pred HHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccc
Confidence 367889999999998886 2 45678999999874 589999999999998743 23444 4899996
Q ss_pred ceeEEEeeEEEecccccccccccccccceeecCceeeecccc-------------cCCHHH-----------HHHHHHHH
Q 016236 64 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPC 119 (392)
Q Consensus 64 ~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~-----------~~~~l~~i 119 (392)
| |.+++|+.|.+.|....|.-+|+ .+.||+|+++|-. ++++++ +...|++|
T Consensus 207 d-S~lv~GVAFkKtFsYAGfEqqPK----k~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki 281 (543)
T KOG0361|consen 207 D-SLLVNGVAFKKTFSYAGFEQQPK----KFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKI 281 (543)
T ss_pred h-hhhccceeeeehccccchhhCcc----ccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 5 88999999999999999977777 6999999999963 344544 34668899
Q ss_pred HhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee
Q 016236 120 MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 199 (392)
Q Consensus 120 ~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~ 199 (392)
..+|+++|+..-.|.|.+.+||+... + .||-|. ..+||.|...+|||++.++ ..++.++.||+|
T Consensus 282 ~~sGAnVVLSkLpIGD~ATQyFAdrd---i--FCAGRV------~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C 345 (543)
T KOG0361|consen 282 HESGANVVLSKLPIGDLATQYFADRD---I--FCAGRV------PEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTC 345 (543)
T ss_pred HhcCCeEEEecccchHHHHHHhhccC---c--eecCcC------CHHHHHHHHHhcCcchhhh-----hhhcchhhcchh
Confidence 99999999988899999999999653 1 344444 5788999999999999987 788999999999
Q ss_pred eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHH
Q 016236 200 KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 276 (392)
Q Consensus 200 ~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~ 276 (392)
+.|+ ++.++|.+|+||+.. +.||+++||+-+..++|.+|++|||++
T Consensus 346 ~~FeE~QvG~eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAIm 394 (543)
T KOG0361|consen 346 ALFEERQVGGERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIM 394 (543)
T ss_pred hhHHHHhhcchhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHH
Confidence 9996 789999999999976 489999999999999999999999999
Q ss_pred HHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCC
Q 016236 277 AVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSD 350 (392)
Q Consensus 277 a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~ 350 (392)
++|.|++.. +|+|||+.||++|+.|++++.. .+++|+-+.+|++|||.|||+||+|||+|...+ ++||. ++..|
T Consensus 395 IVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w 474 (543)
T KOG0361|consen 395 IVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKW 474 (543)
T ss_pred HHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCce
Confidence 999999987 9999999999999999999988 899999999999999999999999999999999 99986 57789
Q ss_pred eeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 351 LGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 351 ~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+|+|..++.+.|+++.+||||..||++++..|+|+|++||.|
T Consensus 475 ~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsv 516 (543)
T KOG0361|consen 475 YGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSV 516 (543)
T ss_pred eeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEeh
Confidence 999999999999999999999999999999999999999975
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.2e-54 Score=447.76 Aligned_cols=335 Identities=22% Similarity=0.358 Sum_probs=298.9
Q ss_pred hHHHHHHHHhcccccCCCH-HHHHHHHHHhcCCc------hhHHHHHHHHHHhh------ccCceEEEEcCCCccceeEE
Q 016236 2 AADAVVRNLDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKG------WENDLITIFDRKALYNELNF 68 (392)
Q Consensus 2 A~~~~l~~L~~~a~~v~~~-~~l~~Va~ts~~~~------~~~~~li~~a~~~v------g~~g~I~v~~g~~~~~~~~~ 68 (392)
|.+.+++.|+++++++++. +.+.++|+|+++++ +.|++++++|+..+ +..+.+.+ .|++. +++++
T Consensus 97 ~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i-~g~~~-~dS~l 174 (485)
T PF00118_consen 97 ALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKI-PGGSI-SDSEL 174 (485)
T ss_dssp HHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEE-ESSSS-GGEEE
T ss_pred hhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhh-ccccc-ccccc
Confidence 6788999999999999876 89999999999987 89999999999443 22222333 56666 56999
Q ss_pred EeeEEEecccccccccccccccceeecCceeeecccccCCHHH-----------------------HHHHHHHHHhcCCC
Q 016236 69 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQS 125 (392)
Q Consensus 69 v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-----------------------~~~~l~~i~~~g~~ 125 (392)
++|++|+++|.++.|+ ..++||+|++++++++.... +.++++++.+.|+|
T Consensus 175 i~Giv~~~~~~~~~~~-------~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~ 247 (485)
T PF00118_consen 175 INGIVLDKGFSSPNMP-------KKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVN 247 (485)
T ss_dssp ESEEEESSSBSSTTSB-------SEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred ccceeeeccccccccc-------cccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccc
Confidence 9999999999998653 26799999999998877666 89999999999999
Q ss_pred EEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEE---
Q 016236 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV--- 202 (392)
Q Consensus 126 lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v--- 202 (392)
|||++++|++.++++|..|+ |.++++. ++++|++||.+|||+++++ +++++++++|+|+.+
T Consensus 248 lIi~~~~i~~~~l~~l~~~~------I~~i~~v-----~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~ 311 (485)
T PF00118_consen 248 LIISQKSIDDEALQYLNKNG------ILVIRRV-----SKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEER 311 (485)
T ss_dssp EEEESSEBTHHHHHHHHHCT------HEEESSE-----HHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEE
T ss_pred eeeeecccccccchhhhhhh------hhccccc-----hHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhc
Confidence 99999999999999998764 6888888 7888999999999999998 688888889999999
Q ss_pred EEecceEEEEc--CCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHH
Q 016236 203 IATMDNVVIIG--GSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 280 (392)
Q Consensus 203 ~i~~~~~~~~~--g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~ 280 (392)
+++++++++++ +|.. ++.+||+|||+|+.+++|+||+++||++++++
T Consensus 312 ~i~~~~~~~~~~~~~~~-------------------------------~~~~Till~g~t~~~l~e~~~~i~dal~~~~~ 360 (485)
T PF00118_consen 312 EIGNKKYIFIEGIGCLS-------------------------------SKICTILLRGPTEFELEERERSIHDALKVLRS 360 (485)
T ss_dssp EETSSEEEEEEEHSESS-------------------------------SSEEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc-------------------------------cCceEEEeccccchhHHHHHHHHHHHHHHHHH
Confidence 67899999998 4433 46899999999999999999999999999999
Q ss_pred HHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeC
Q 016236 281 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNP 355 (392)
Q Consensus 281 al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~ 355 (392)
+++++ +|||||++|++|+.+|+++... ++++++++++|++||+.||++|++|||+|+.++ ++++. +.++++|||.
T Consensus 361 ~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~ 440 (485)
T PF00118_consen 361 ALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDL 440 (485)
T ss_dssp HHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEET
T ss_pred hccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCc
Confidence 99976 9999999999999999877765 889999999999999999999999999999999 99987 3456899999
Q ss_pred CCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 356 ARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 356 ~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
.+|++.||++.|||||+.+|+++++.|+++|++||+|
T Consensus 441 ~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~i 477 (485)
T PF00118_consen 441 DTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRI 477 (485)
T ss_dssp TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred cCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986
No 36
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=391.73 Aligned_cols=350 Identities=19% Similarity=0.240 Sum_probs=296.3
Q ss_pred ChHHHHHHHHhcccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhcc-C-------ceEEE--EcCCCc
Q 016236 1 MAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-N-------DLITI--FDRKAL 62 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~-~-------g~I~v--~~g~~~ 62 (392)
.|.+.+++.|++|+.|++ |++.|.+-|+||+|+ ...++.+.++|+..+-. + ..|++ +.|+..
T Consensus 133 ~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtv 212 (534)
T KOG0358|consen 133 SAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTV 212 (534)
T ss_pred HHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCcc
Confidence 377889999999999886 677799999999983 67899999999998753 1 13444 368887
Q ss_pred cceeEEEeeEEEecccccccccccccccc---e--eecCce------eeecccc-----cCCH-HHHHHHHHHHHhcCCC
Q 016236 63 YNELNFVKGMKLEWGLKSPYFFTHKNKKE---C--VLDGAL------VLIYDTK-----ISNS-NVIRQASLPCMMQGQS 125 (392)
Q Consensus 63 ~~~~~~v~G~~~d~g~~s~~~~~~~~~~~---~--~l~~~~------Il~~d~~-----i~~~-~~~~~~l~~i~~~g~~ 125 (392)
|++++++|++|++......-+|..++.+ + .++.|+ |++.|.. +++. +.++.++++|+++|++
T Consensus 213 -dDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcn 291 (534)
T KOG0358|consen 213 -DDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCN 291 (534)
T ss_pred -chhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 6699999999997654322333222222 2 234454 3344321 1111 3578999999999999
Q ss_pred EEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEE-
Q 016236 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA- 204 (392)
Q Consensus 126 lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i- 204 (392)
+++++++|=.++++.|+.|.+.. ++|++||.. .++++|.+|+.+|++++++ ++.++++.||+++.++.
T Consensus 292 vLliQKSILRdavsDLAlHfL~k-lkimvikdi-----eRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~ 360 (534)
T KOG0358|consen 292 VLLIQKSILRDAVSDLALHFLAK-LKIMVIKDI-----EREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEET 360 (534)
T ss_pred EEEEeHHHHHHHHHHHHHHHHHh-CcEEEEccc-----cHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhc
Confidence 99999999888888888887766 799999988 5778999999999999998 89999999999999974
Q ss_pred ---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHH
Q 016236 205 ---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 281 (392)
Q Consensus 205 ---~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a 281 (392)
++.+++-+.|+.++ |..++|++||+++..++|.+|++|||||++|+.
T Consensus 361 ~~~G~gkivk~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCL 410 (534)
T KOG0358|consen 361 DSSGEGKIVKITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCL 410 (534)
T ss_pred ccCCCccEEEEEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhh
Confidence 45588888888764 579999999999999999999999999999999
Q ss_pred HHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeC
Q 016236 282 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 355 (392)
Q Consensus 282 l~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~ 355 (392)
++.. .+||||+.||+++..|..++.+ .|.++|++++|++|||.+|.+||+|||++|..+ .+||+ ++..+.|+|+
T Consensus 411 vk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInV 490 (534)
T KOG0358|consen 411 VKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINV 490 (534)
T ss_pred hhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceee
Confidence 9986 9999999999999999999876 889999999999999999999999999999999 99986 5678899999
Q ss_pred CCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 356 ARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 356 ~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
++|.+.||++..|+.|+.|..++++.|++...+||+|
T Consensus 491 Rkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 491 RKGGITNILEENVVQPLLVSISAITLATETVRSILKI 527 (534)
T ss_pred ecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999987
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-48 Score=368.48 Aligned_cols=335 Identities=19% Similarity=0.259 Sum_probs=291.5
Q ss_pred hHHHHHHHHhcccccCC-C----HHHHHHHHHHhcCC------chhHHHHHHHHHHhhccCc---eEEE--EcCCCccce
Q 016236 2 AADAVVRNLDCQARKIT-T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LITI--FDRKALYNE 65 (392)
Q Consensus 2 A~~~~l~~L~~~a~~v~-~----~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~~g---~I~v--~~g~~~~~~ 65 (392)
|...+++.|.+.++.-. + +++|.++|+|++.+ .+.|+++.++|+.++.-.+ .|.| ..|+++.|
T Consensus 128 A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~d- 206 (527)
T KOG0363|consen 128 ATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLED- 206 (527)
T ss_pred HHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCcccc-
Confidence 66778888888776544 2 57899999999863 5899999999999985433 3444 47888855
Q ss_pred eEEEeeEEEecccccccccccccccceeecCceeeecccccC--------------CH-----------HHHHHHHHHHH
Q 016236 66 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NS-----------NVIRQASLPCM 120 (392)
Q Consensus 66 ~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~--------------~~-----------~~~~~~l~~i~ 120 (392)
+.+-+|+.+++.+-- .+|+ .++||+||+-+.+.+ +. +.++..+++|.
T Consensus 207 SfLDeGFlL~K~igv----~qpk----riena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~ 278 (527)
T KOG0363|consen 207 SFLDEGFLLDKKIGV----NQPK----RIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKIL 278 (527)
T ss_pred ccccccceeccccCC----CCcc----cccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999986421 2244 689999999886422 21 25788899999
Q ss_pred hcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeee
Q 016236 121 MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCK 200 (392)
Q Consensus 121 ~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~ 200 (392)
++|+|++|-.+-|.+...++|... +|++|....|. .+|||+..|||.++|. |++++..+||+|+
T Consensus 279 ~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADFd-----GiERLalvtGGeI~ST-----Fd~p~~~klG~C~ 342 (527)
T KOG0363|consen 279 KHGINVFINRQLIYNYPEQLFADA------GIMAIEHADFD-----GIERLALVTGGEIVST-----FDNPELVKLGECD 342 (527)
T ss_pred hcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccch-----hHHHHhhcccceeeec-----cCCcchhccccch
Confidence 999999999999999999988753 57999988654 5999999999999998 9999999999999
Q ss_pred EEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHH
Q 016236 201 RVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHA 277 (392)
Q Consensus 201 ~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a 277 (392)
.++ ++++++.-|.||.- |-.|||++||+|++.+||.+|++|||||+
T Consensus 343 ~IeeimiGed~li~FSGv~~-------------------------------GeActIVlrGat~q~LDEaeRslHDALcV 391 (527)
T KOG0363|consen 343 LIEEIMIGEDKLIKFSGVKL-------------------------------GEACTIVLRGATQQILDEAERSLHDALCV 391 (527)
T ss_pred hhHHHhcCccceeeeccccc-------------------------------ccceEEEEecccHHHHHHHHHHHHHHHHH
Confidence 985 79999999999874 44899999999999999999999999999
Q ss_pred HHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCe
Q 016236 278 VQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDL 351 (392)
Q Consensus 278 ~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~ 351 (392)
.....++. +|.|||++||.++.++.+++.. +|++..++++|++||.++|.+||.|||||+.++ .+||+ ++..++
T Consensus 392 Laqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~ 471 (527)
T KOG0363|consen 392 LAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTM 471 (527)
T ss_pred HHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCccc
Confidence 99999986 9999999999999999998876 899999999999999999999999999999999 99987 466889
Q ss_pred eEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 352 GYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 352 G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
|+|+.+|++.||.+.||+|++.||++.+.+|.++|.+|||+
T Consensus 472 Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrv 512 (527)
T KOG0363|consen 472 GLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRV 512 (527)
T ss_pred ccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999984
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=370.11 Aligned_cols=337 Identities=15% Similarity=0.150 Sum_probs=295.3
Q ss_pred ChHHHHHHHHhcccccCC--CHHHHHHHHHHhcC------CchhHHHHHHHHHHhhccC-ce-E------EEE--cCCCc
Q 016236 1 MAADAVVRNLDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN-DL-I------TIF--DRKAL 62 (392)
Q Consensus 1 ~A~~~~l~~L~~~a~~v~--~~~~l~~Va~ts~~------~~~~~~~li~~a~~~vg~~-g~-I------~v~--~g~~~ 62 (392)
+|++.++..|++++.|++ +...+++|..++.. .++.++++..+|++.|+.+ |. | +++ +|+.+
T Consensus 126 ~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l 205 (527)
T KOG0364|consen 126 KALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLL 205 (527)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccc
Confidence 478888999998888876 56778888888775 2567899999999999864 32 2 333 68887
Q ss_pred cceeEEEeeEEEecccccccccccccccceeecCceeeecccccCC------------------------HHHHHHHHHH
Q 016236 63 YNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLP 118 (392)
Q Consensus 63 ~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~------------------------~~~~~~~l~~ 118 (392)
+ ++++++|+.+++...||.| +..++||+|+++|+++.+ .+++..+++.
T Consensus 206 ~-~s~vl~Gv~~nkdv~Hpkm-------rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~ 277 (527)
T KOG0364|consen 206 E-DSCVLKGVMINKDVTHPKM-------RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEV 277 (527)
T ss_pred c-ccceecceeeccccCcHHH-------HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHH
Confidence 5 4999999999999999865 457899999999987542 1346677888
Q ss_pred HHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCcee
Q 016236 119 CMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198 (392)
Q Consensus 119 i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~ 198 (392)
|......||++-++++|.+.|+|..++ +.++|+. ||+|..++|.+||++++++ ++++.+.+.|+
T Consensus 278 Ii~v~pDlVitekG~sdla~hyl~k~~------iT~~rr~-----rKtDn~ria~acga~iv~r-----pedl~e~dvGt 341 (527)
T KOG0364|consen 278 IIAVKPDLVITEKGVSDLAQHYLLKAN------ITAIRRL-----RKTDNNRIARACGARIVNR-----PEDLPERDVGT 341 (527)
T ss_pred HHeecccEEEeccchhHHHHHHHHhcC------chhhhhh-----hccccchhhhhcCceeccC-----hhhCchhccCc
Confidence 888887888888899999999999775 5668887 9999999999999999998 99999999996
Q ss_pred -eeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHH
Q 016236 199 -CKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNA 274 (392)
Q Consensus 199 -~~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DA 274 (392)
|+.++ ++++.|+||..|.+|+ .|||++||+|..+++|.+|.+.||
T Consensus 342 ~agLf~~kK~gdeyf~f~~~Ck~pk-------------------------------aCtillrg~skdil~e~ernlqda 390 (527)
T KOG0364|consen 342 GAGLFEVKKIGDEYFTFFTDCKEPK-------------------------------ACTILLRGPSKDILNEVERNLQDA 390 (527)
T ss_pred ccceeeeeccCchhhhhhhhcCCCc-------------------------------ceEEEeccCchhHHHHHHHHhhhH
Confidence 88887 4688899999999986 899999999999999999999999
Q ss_pred HHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCC
Q 016236 275 LHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDS 348 (392)
Q Consensus 275 l~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~ 348 (392)
+.+.|+.+-+. +||||||+||.+|+.|.+.+.. ++-+|+.|.+++.||+.+||+|++|+|.|+... ..+++ ++.
T Consensus 391 ~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~ 470 (527)
T KOG0364|consen 391 MGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQ 470 (527)
T ss_pred HHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcc
Confidence 99999999986 9999999999999999986655 889999999999999999999999999999988 77776 345
Q ss_pred CCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 349 SDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 349 ~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
..+|+|..+|.++||.+.|+|+|..||.+..++|++.|+++|||
T Consensus 471 ~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRI 514 (527)
T KOG0364|consen 471 RVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRI 514 (527)
T ss_pred eeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999999997
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-46 Score=362.97 Aligned_cols=340 Identities=17% Similarity=0.227 Sum_probs=295.0
Q ss_pred hHHHHHHHHhc-ccccCC--CHHHHHHHHHHhcCC------chhHHHHHHHHHHhhcc---Cc-------eEEEE--cCC
Q 016236 2 AADAVVRNLDC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---ND-------LITIF--DRK 60 (392)
Q Consensus 2 A~~~~l~~L~~-~a~~v~--~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg~---~g-------~I~v~--~g~ 60 (392)
|+..+++++++ ++.|++ ...-|.++|+|++.+ .++|++++++|+..+.. +| .++|- .|+
T Consensus 127 ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~ 206 (545)
T KOG0360|consen 127 ACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGK 206 (545)
T ss_pred HHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCc
Confidence 66778888876 577877 467899999999874 58999999999998742 23 23442 577
Q ss_pred CccceeEEEeeEEEecccccccccccccccceeecCceeeecccc-------------cCCHHHH-----------HHHH
Q 016236 61 ALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQAS 116 (392)
Q Consensus 61 ~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~~-----------~~~l 116 (392)
+. .||.++.|+.+++...+..|+ ..+.|+||+++|+. +.+++++ ++-+
T Consensus 207 s~-~eS~l~~GyaLnc~~asq~m~-------~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi 278 (545)
T KOG0360|consen 207 SQ-IESMLLPGYALNCSVASQMMP-------LRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERI 278 (545)
T ss_pred cc-hhheeecceeeeccHhhhccc-------cccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHH
Confidence 76 569999999999998887763 36779999999974 4555433 3447
Q ss_pred HHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCC-cCCCCCCC
Q 016236 117 LPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLK 195 (392)
Q Consensus 117 ~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~-~~~~~~~~ 195 (392)
+++..+|+++|+++++|||.++++|+.. +++||||. +|++|++||++||++++++...+. -|.+++..
T Consensus 279 ~kIl~~ganvVLtt~gIddmc~K~~vea------gamAVrR~-----~k~dlk~iakatGat~~sSla~l~geetf~~~~ 347 (545)
T KOG0360|consen 279 KKILATGANVVLTTGGIDDMCLKYFVEA------GAMAVRRC-----KKEDLKRIAKATGATLLSSLANLEGEETFEPAS 347 (545)
T ss_pred HHHHhcCCcEEEEcCCccHHHHHHHHHc------chhhhHHH-----HHHHHHHHHHhhCCeeeehhhccccccccChhh
Confidence 7899999999999999999999999976 47999999 899999999999999999966555 56788899
Q ss_pred ceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHH
Q 016236 196 LGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKIT 272 (392)
Q Consensus 196 LG~~~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~ 272 (392)
+|+|+.|. +++|+++.+.|.+. ..|+|++||++++.+||++|++|
T Consensus 348 lG~a~evvqeri~dde~ilikg~ka--------------------------------~~aSiILrgaNd~~~DEmers~h 395 (545)
T KOG0360|consen 348 LGSADEVVQERIGDDELILIKGTKA--------------------------------TSASIILRGANDFMLDEMERSLH 395 (545)
T ss_pred ccchhHHHHHhcccceeEEeccCcc--------------------------------ceeeEEEecCCcccHhhhccchh
Confidence 99999995 78999999987553 26899999999999999999999
Q ss_pred HHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---
Q 016236 273 NALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ--- 346 (392)
Q Consensus 273 DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~--- 346 (392)
||||++|..++++ +|||||++|.+++.+|+.++.+ +++||.++..|+.||..+|++|+-||+.|+.++ .+++..
T Consensus 396 daL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~ 475 (545)
T KOG0360|consen 396 DALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSV 475 (545)
T ss_pred hHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchh
Confidence 9999999999998 9999999999999999999887 789999999999999999999999999999999 998851
Q ss_pred --------CCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 347 --------DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 347 --------~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
...++|.|..+|++.|.++.|+++|..+|..+++.|+++|..+|||
T Consensus 476 ~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLri 529 (545)
T KOG0360|consen 476 SQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRI 529 (545)
T ss_pred hccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcch
Confidence 2347899999999999999999999999999999999999999997
No 40
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-46 Score=350.61 Aligned_cols=240 Identities=19% Similarity=0.201 Sum_probs=220.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCC
Q 016236 106 ISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 185 (392)
Q Consensus 106 i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~ 185 (392)
+.++-++..+++.++++|++|+||+|+|||+|-|+|..|++ -||||+|-. ++|-||++|||+++.+
T Consensus 138 i~~~~ef~emi~~vK~~ga~l~icqwgfddeanhll~~n~l------pavrwVGGp-----EiEliAiaT~grIVpr--- 203 (400)
T KOG0357|consen 138 ISDPFEFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVRWVGGP-----EIELIAIATGGRIVPR--- 203 (400)
T ss_pred hcccccHHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC------CceeecCCc-----ceEEEEeecCCeeecc---
Confidence 33344488899999999999999999999999999999875 469999732 4999999999999998
Q ss_pred CCcCCCCCCCceeeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCc
Q 016236 186 MNSTYFVPLKLGSCKRVIA-----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHG 260 (392)
Q Consensus 186 ~~~~~~~~~~LG~~~~v~i-----~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t 260 (392)
|+++++++||+|+.|.. ++|+..+++.|++++ ..||.|||+|
T Consensus 204 --F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nsk-------------------------------aVTifvRg~N 250 (400)
T KOG0357|consen 204 --FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSK-------------------------------AVTIFVRGGN 250 (400)
T ss_pred --HhhhCHhhccccceEEEEecccccceEEEEEecCCCc-------------------------------eEEEEEecCc
Confidence 99999999999999962 488999999999986 4599999999
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 016236 261 KAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGS 338 (392)
Q Consensus 261 ~~~l~E~~r~i~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~ 338 (392)
..+++|.||++|||||++|+.+++. +|+|||++|+.||.++.+.+.. ++.+||++++|++||+.||..||+|+|++|+
T Consensus 251 kmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi 330 (400)
T KOG0357|consen 251 KMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPI 330 (400)
T ss_pred ceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCch
Confidence 9999999999999999999999986 9999999999999999887766 8999999999999999999999999999999
Q ss_pred HH-HHHHh----cCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 339 VI-DKLLE----QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 339 ~v-~~l~~----~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
+. +++++ ...+++|+|+.-..--||.+.+++||+..|++.+..|+.++.|||+|
T Consensus 331 ~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKi 389 (400)
T KOG0357|consen 331 ETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKI 389 (400)
T ss_pred hhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 99 88875 35678999999888999999999999999999999999999999987
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-44 Score=344.13 Aligned_cols=334 Identities=18% Similarity=0.248 Sum_probs=279.0
Q ss_pred hHHHHHHHHhcccccCCCHHHHHHHHHHhcCC------chhHHHHHHHHHHhhc-cCce---EEEE----cCCCccceeE
Q 016236 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANG------DGEIGELIAKVFEKGW-ENDL---ITIF----DRKALYNELN 67 (392)
Q Consensus 2 A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~------~~~~~~li~~a~~~vg-~~g~---I~v~----~g~~~~~~~~ 67 (392)
|.+.++++|++.++++ +++.|.+||++|++. -+-+.+++++|+..+. .++. +.|+ ..++. .+..
T Consensus 125 a~~~~l~~L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~-~dT~ 202 (520)
T KOG0359|consen 125 AKNKALEFLEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSL-HDTS 202 (520)
T ss_pred HHHHHHhhhhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCch-hhhH
Confidence 6788999999777776 578899999999984 2567778888888776 2332 2222 23343 4578
Q ss_pred EEeeEEEecccccccccccccccceeecCceeeecccccCCH-------------HH-----------HHHHHHHHHhcC
Q 016236 68 FVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQG 123 (392)
Q Consensus 68 ~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~~-----------~~~~l~~i~~~g 123 (392)
+++|+++|||-.||.|++ .++|++||++|..+++. +| +..-+.+|.+.+
T Consensus 203 ~v~glvLdhg~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk 275 (520)
T KOG0359|consen 203 LVQGLVLDHGARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELK 275 (520)
T ss_pred HhhhhhccCCCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999854 68999999999755431 11 123344455444
Q ss_pred ---CCEE-EEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceee
Q 016236 124 ---QSLL-VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 199 (392)
Q Consensus 124 ---~~lv-i~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~ 199 (392)
+-+| |.+++|||..|..|+.+ +|+|+|+.- |++ ||||..+|||..+++ ++|++|++||+|
T Consensus 276 ~~vc~fvvinqkGidp~sld~~a~~------gIlaLRRAK----RRN-mERL~lacGG~a~ns-----vddLtp~~LG~a 339 (520)
T KOG0359|consen 276 RKVCEFVVINQKGIDPTSLDSLAKS------GILALRRAK----RRN-MERLVLACGGEAVNS-----VDDLTPDYLGYA 339 (520)
T ss_pred hhcceEEEecccCCCCCcchhhhhc------chHHHHHHh----hhh-HHHHHHhhccceecc-----cccCChhhcccc
Confidence 3355 55679999999999865 479999982 555 999999999999988 899999999999
Q ss_pred eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHH
Q 016236 200 KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 276 (392)
Q Consensus 200 ~~v~---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~ 276 (392)
+.|. +|+++|||+++|++|. .|||+++|+|++.+-.+|++++|+++
T Consensus 340 glVye~tlGEEkfTFIE~~~~p~-------------------------------S~TiLikgpnkht~tQikdairdglr 388 (520)
T KOG0359|consen 340 GLVYEYTLGEEKFTFIEKCNNPS-------------------------------SVTILIKGPNKHTITQIKDAIRDGLR 388 (520)
T ss_pred ceeEEeeccceeeEeeecCCCCc-------------------------------ceEEEEeCCccchHHHHHHHHhhHHH
Confidence 9996 6899999999999985 78999999999999999999999999
Q ss_pred HHHHHHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcC-CCCee
Q 016236 277 AVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQD-SSDLG 352 (392)
Q Consensus 277 a~r~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~-~~~~G 352 (392)
+++++++++ ++||+|+.|.+++.+|+....+ .++.++|+++|++||..+|++|++|+|+|+.+. .+|..+. ....|
T Consensus 389 av~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g 468 (520)
T KOG0359|consen 389 AVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRG 468 (520)
T ss_pred HHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcc
Confidence 999999998 9999999999999999977665 899999999999999999999999999999998 8876532 23469
Q ss_pred EeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhc
Q 016236 353 YNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 391 (392)
Q Consensus 353 ~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 391 (392)
+|..+|+..+....||||.+.|+++.|.+++-+|+.+|-
T Consensus 469 ~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLl 507 (520)
T KOG0359|consen 469 LDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLL 507 (520)
T ss_pred cccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999998873
No 42
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=332.03 Aligned_cols=334 Identities=17% Similarity=0.180 Sum_probs=273.7
Q ss_pred hHHHHHHHHhcccc-cCCCHHHHHHHHHHhcC-----CchhHHHHHHHHHHhhccCce-----EEEE--cCCCccceeEE
Q 016236 2 AADAVVRNLDCQAR-KITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWENDL-----ITIF--DRKALYNELNF 68 (392)
Q Consensus 2 A~~~~l~~L~~~a~-~v~~~~~l~~Va~ts~~-----~~~~~~~li~~a~~~vg~~g~-----I~v~--~g~~~~~~~~~ 68 (392)
|.+.+++.|.++.. .+.|.++..++++++.+ .++++.+++++|+.++.+.+. |.|- .|+++++ |.+
T Consensus 134 A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~-S~V 212 (537)
T KOG0362|consen 134 ATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLED-SCV 212 (537)
T ss_pred HHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCccc-cee
Confidence 67778888887653 23333333355565554 368999999999999988743 3332 6888865 899
Q ss_pred EeeEEEecccccccccccccccceeecCceeeecccc-------------cCCHHHH-----------HHHHHHHHhcCC
Q 016236 69 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQ 124 (392)
Q Consensus 69 v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~~-----------~~~l~~i~~~g~ 124 (392)
+.||+|.+.....- + .-..++|.++.|+ |++++++ ...++.+...|.
T Consensus 213 v~GmVfkr~~eG~v--~-------~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gv 283 (537)
T KOG0362|consen 213 VCGMVFKRDPEGEV--K-------SAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGV 283 (537)
T ss_pred eEEEEeccccCCcc--c-------ccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCC
Confidence 99999998754321 1 2234455555554 5555544 455777889999
Q ss_pred CEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEE-
Q 016236 125 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI- 203 (392)
Q Consensus 125 ~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~- 203 (392)
+++++...+++.+|+++ |+ ++|+++|.+ +|.+|.+||+..||++.++ +..+.+..+|+|++|.
T Consensus 284 kViV~~g~V~em~Lhfl--nk----y~ImVlqi~-----Sk~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~ 347 (537)
T KOG0362|consen 284 KVIVSGGKVDEMTLHFL--NK----YKIMVLQIN-----SKFDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVST 347 (537)
T ss_pred eEEEecCccchhhhhhh--cc----ccEEEEEec-----cHhhHHHHHHHcCCccchh-----ccCCCCccccccceeee
Confidence 99999999999999964 33 789999999 8999999999999999998 7888889999999995
Q ss_pred --EecceEEEEcC-CCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHH
Q 016236 204 --ATMDNVVIIGG-SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 280 (392)
Q Consensus 204 --i~~~~~~~~~g-~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~ 280 (392)
++++.+++|.. ++. +.++||++||+|+..+|+.||+++|++++.++
T Consensus 348 ~EiG~~~v~vF~~e~~~-------------------------------~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~ 396 (537)
T KOG0362|consen 348 QEIGDTLVVVFRWESTG-------------------------------TRVATVVLRGATQSILDDAERAVDDGVNTYKA 396 (537)
T ss_pred eecCCceEEEEeeccCC-------------------------------CceeEEEEcccchhhHHHHHHHHHHhHHHhhh
Confidence 67788777764 332 35889999999999999999999999999999
Q ss_pred HHHcC-cccCCcHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeC
Q 016236 281 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNP 355 (392)
Q Consensus 281 al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~~q~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~ 355 (392)
.++++ ++||+|++|+++++.|.++... +|..|+++..|++||+..|++||+|||++..++ .++.. ++..+.|+|+
T Consensus 397 l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di 476 (537)
T KOG0362|consen 397 LCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDI 476 (537)
T ss_pred hccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeee
Confidence 99997 9999999999999999998875 899999999999999999999999999999999 88865 3345678888
Q ss_pred CCC-ccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016236 356 ARG-NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 392 (392)
Q Consensus 356 ~~g-~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 392 (392)
..+ ...|+.+.||||-+.+|.++|+.|+++|.++|++
T Consensus 477 ~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 477 EAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred eccccccChhhhchHHHHHHHHHHHHHHHhhhheeeeh
Confidence 776 5899999999999999999999999999999985
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.98 E-value=4.1e-31 Score=244.21 Aligned_cols=192 Identities=26% Similarity=0.347 Sum_probs=169.1
Q ss_pred HHHHHHHHHhcC-----CchhHHHHHHHHHHhhcc------CceEEEE--cCCCccceeEEEeeEEEecccccccccccc
Q 016236 21 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 87 (392)
Q Consensus 21 ~~l~~Va~ts~~-----~~~~~~~li~~a~~~vg~------~g~I~v~--~g~~~~~~~~~v~G~~~d~g~~s~~~~~~~ 87 (392)
+.|.++|+||++ +++.+++++++|+..+++ .+.|.|+ +|++. .++++++|++|+++|.||+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~-~ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSL-EDSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcCh-hhceeEeeEEEeccccCCCCC---
Confidence 468999999999 688999999999999987 4567775 67776 458999999999999999983
Q ss_pred cccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhH
Q 016236 88 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 167 (392)
Q Consensus 88 ~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ 167 (392)
..++||+|++++++++. +|+++++|++.++++|..+ +|++|+++ ++.+
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~~-----~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRRV-----KKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEeC-----CHHH
Confidence 37899999999999887 7777788999999999874 48999998 7888
Q ss_pred HHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHH
Q 016236 168 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 244 (392)
Q Consensus 168 ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl 244 (392)
|+|||++|||+++++ ++++++++||+|++|++. ++++++|.+|..+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999998 788889999999999865 4468899888754
Q ss_pred hhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHc
Q 016236 245 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 284 (392)
Q Consensus 245 a~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~ 284 (392)
+.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 48999999999999999999999999999999874
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.96 E-value=2.1e-28 Score=233.39 Aligned_cols=198 Identities=11% Similarity=0.165 Sum_probs=167.7
Q ss_pred chhHHHHHHHHHHhhccC----------ceEEEE--cCCCccceeEEEeeEEEecccccccccccccccceeecCceeee
Q 016236 34 DGEIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 101 (392)
Q Consensus 34 ~~~~~~li~~a~~~vg~~----------g~I~v~--~g~~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~ 101 (392)
.+.|++++++|+..+.++ ..|+|+ +|+++ .++++++|++|++.+.++.|++ .++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~-~dS~li~Gvvi~k~~~~~~m~~-------~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSP-SDSEVVDGVVFTKNVAHKRMPS-------KIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCH-HHcEEEeeEEEeCCCCCccCCc-------ccCCCcEEE
Confidence 478999999999988522 136664 78888 4599999999999999887743 689999999
Q ss_pred cccccCCH-----------------HHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccch
Q 016236 102 YDTKISNS-----------------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 164 (392)
Q Consensus 102 ~d~~i~~~-----------------~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~r 164 (392)
++++++.. +.+...+++++..|+++|+++++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 99876432 13566788899999999999999999999999975 47999999 7
Q ss_pred hhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEE---ec-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 016236 165 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 236 (392)
Q Consensus 165 k~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i---~~-----~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~ 236 (392)
+++|++||++|||+++++. .+++++++||+|+.|++ ++ .+++||+||+.++
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~----------------- 219 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKEL----------------- 219 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCc-----------------
Confidence 8889999999999999972 24678889999999975 33 4789999998653
Q ss_pred cHHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC
Q 016236 237 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 285 (392)
Q Consensus 237 s~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g 285 (392)
.+||+|||+|++.++|.||.++||+++++++..++
T Consensus 220 --------------~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 220 --------------GCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred --------------eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 78999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.03 E-value=2.1e-09 Score=118.70 Aligned_cols=205 Identities=12% Similarity=0.164 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHhhccC----------ceEEEE--cCCCccceeEEEeeEEEecccccccccccccccceeecCceeeecc
Q 016236 36 EIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYD 103 (392)
Q Consensus 36 ~~~~li~~a~~~vg~~----------g~I~v~--~g~~~~~~~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d 103 (392)
-+..+.-+|...+.++ +.++|+ .||.. .+++++.|+++.+-..+-.|.+ ++++|+|++..
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M~~-------~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRMAT-------KYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhhhh-------hccCCceEEEe
Confidence 4455555565555432 245654 67764 5699999999999887776654 68889999887
Q ss_pred cccC---------CH--------HHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhh
Q 016236 104 TKIS---------NS--------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 166 (392)
Q Consensus 104 ~~i~---------~~--------~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~ 166 (392)
..+. +. +.+...+..|.....+++++.+++++.|+.+|.. +++.-++=| ++.
T Consensus 408 g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~---k~I~lvlnv--------K~s 476 (1598)
T KOG0230|consen 408 GPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD---KGISLVLNV--------KRS 476 (1598)
T ss_pred cchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc---cCeEEEEec--------cHH
Confidence 6432 22 2345556667666778889999999999999884 343223333 455
Q ss_pred HHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEe----c----ceEEEEcCCCChhhHHHHHHHHHHHhhhcccH
Q 016236 167 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT----M----DNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 238 (392)
Q Consensus 167 ~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~----~----~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~ 238 (392)
.|+||++.|||.|+++ ++.++...||+|..+++. + ...+||+||+.+.
T Consensus 477 ~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l------------------- 532 (1598)
T KOG0230|consen 477 LLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL------------------- 532 (1598)
T ss_pred HHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-------------------
Confidence 7999999999999987 777888999999999753 1 2358999999874
Q ss_pred HHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHH-HHHcCcccCCcHHHH
Q 016236 239 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA-AKEEGIVPGSGVALL 295 (392)
Q Consensus 239 ~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~-al~~gvVpGGGa~e~ 295 (392)
.|||++||++..++++.|+-+.=.+.++-. +++.-|+.-=|+...
T Consensus 533 ------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 533 ------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred ------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 789999999999999999998888777664 466567766666543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=7.7e-06 Score=85.45 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCC-EEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHH-HHHHHHhCCeEecCCCCCCcC
Q 016236 112 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 189 (392)
Q Consensus 112 ~~~~l~~i~~~g~~-lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~l-edla~~tGa~i~s~~~~~~~~ 189 (392)
+..+++.+.+.|.+ ++|++++|+|.++++|..+ .|++++++ .++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v-----~~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRV-----KKEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceeccee-----cchhhHHHHHHccCceEEee-----cc
Confidence 45667778899999 8889999999999999975 48999999 67778 79999999999998 89
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEcCCCC
Q 016236 190 YFVPLKLGS--CKRVIA---TMDNVVIIGGSGE 217 (392)
Q Consensus 190 ~~~~~~LG~--~~~v~i---~~~~~~~~~g~~~ 217 (392)
+.++..+|. |+.|+. +++++++|.+|.+
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999999 999974 4667777777754
No 47
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=61.96 E-value=18 Score=38.23 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=30.4
Q ss_pred HHHHHhhccCceEEEEcCCCccc-eeEEEeeEEEeccccccccccc
Q 016236 42 AKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFTH 86 (392)
Q Consensus 42 ~~a~~~vg~~g~I~v~~g~~~~~-~~~~v~G~~~d~g~~s~~~~~~ 86 (392)
.+++..++.++.+.++.+....+ .+.-+.|..++.+|+.|+|+.+
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~ 223 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILE 223 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEe
Confidence 45555566666667765555433 4566668889999999998653
No 48
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=47.64 E-value=6.3 Score=41.57 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=50.6
Q ss_pred hcCCCEEEEecCcch-----hhhhhHHhhccCCC----ceEEEEeccCCccchhhHHHHHHHHhCCeEecC
Q 016236 121 MQGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 182 (392)
Q Consensus 121 ~~g~~lvi~~~~i~~-----~al~~L~~n~~~~~----~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~ 182 (392)
+...|+.|..+++++ +++..+..|+.++. .++++++.| +++++.+.|+|..+.++.++...
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 344588999999999 88888888887764 388999988 99999999999999999877654
No 49
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=47.24 E-value=31 Score=36.38 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHhhccCceEEEEcCCCccceeEEE--eeEEEeccccccccccc
Q 016236 42 AKVFEKGWENDLITIFDRKALYNELNFV--KGMKLEWGLKSPYFFTH 86 (392)
Q Consensus 42 ~~a~~~vg~~g~I~v~~g~~~~~~~~~v--~G~~~d~g~~s~~~~~~ 86 (392)
++++..++.++.+.++.+... +.++++ .|..++.+|+.|+|+.+
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~ 212 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLLE 212 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEEe
Confidence 344455555666666654444 447777 48888888888888653
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=45.83 E-value=79 Score=24.87 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCe
Q 016236 113 RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 178 (392)
Q Consensus 113 ~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~ 178 (392)
.+.++.+.+-..-+|++++|+++.....|..--.+..+++ +-.+ + +++|-++||-.
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~--v~V~-----s---~~~LGkAcgi~ 74 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV--SFFK-----S---KHALGKHVGIN 74 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE--EEEC-----C---HHHHHHHhCCC
Confidence 3445555555578999999999998876653222222333 3334 2 56777888754
No 51
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=37.88 E-value=73 Score=24.78 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCEEEEec-CcchhhhhhHHhhccCCCceEEEEeccC-CccchhhHHHHHHHHhCCeEecC
Q 016236 115 ASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 182 (392)
Q Consensus 115 ~l~~i~~~g~~lvi~~~-~i~~~al~~L~~n~~~~~~~i~avr~~~-~g~~rk~~ledla~~tGa~i~s~ 182 (392)
.|......-.|++-+.+ ++++.++..+-..- +. -.++=||..+ ..+.+++..+.|+..|||.++..
T Consensus 8 ~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l-~~-~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 8 FLRKLAHHLKPVVQIGKNGLTDGVIEEIDDAL-EK-HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHTTC--SEEE-TTSS-HHHHHHHHHHH-HH-HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHhcCCCCeEEECCCCCCHHHHHHHHHHH-Hh-CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 44544445578888876 89988888654321 11 1456666665 23336677888999999999864
No 52
>smart00574 POX domain associated with HOX domains.
Probab=37.17 E-value=54 Score=28.31 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHH
Q 016236 238 DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDK 303 (392)
Q Consensus 238 ~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~ 303 (392)
..++.|.++|- ..++|.++|.+--..-++..+..- .|+|+|++-.+.+-+|+.
T Consensus 73 ~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 73 QELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 35566666654 367888888888777777777764 889999998888877754
No 53
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=36.42 E-value=2e+02 Score=23.22 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCEEEEec-CcchhhhhhHHhhccCCCceEEEEecc-CCccchhhHHHHHHHHhCCeEecC
Q 016236 113 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAA-GLAEDRKAIMEDLAILTGGQVLTG 182 (392)
Q Consensus 113 ~~~l~~i~~~g~~lvi~~~-~i~~~al~~L~~n~~~~~~~i~avr~~-~~g~~rk~~ledla~~tGa~i~s~ 182 (392)
..+|....-+=.|+|.+.+ |+++.++..+-.. +.. -..+=||.. .-.+.+++..+.||..||+.++..
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~a-L~~-hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQA-LEH-HELIKVKIATEDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHH-HHH-CCcEEEEecCCChhHHHHHHHHHHHHHCCEEEee
Confidence 4556655444579998876 8999998865422 111 122223322 223447788899999999998854
No 54
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=34.18 E-value=1.3e+02 Score=23.51 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCe
Q 016236 115 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 178 (392)
Q Consensus 115 ~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~ 178 (392)
.++.+.+-...|||++.|.++.....+...-.....++ +... ..++|..+||-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv--~~~~--------t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI--VYID--------TMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE--EEeC--------CHHHHHHHHCCc
Confidence 34555555578999999999988776642111111233 3222 256888888854
No 55
>PRK06683 hypothetical protein; Provisional
Probab=32.44 E-value=1.7e+02 Score=22.76 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCe
Q 016236 115 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 178 (392)
Q Consensus 115 ~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~ 178 (392)
.++.+.+-...+||+++|.++...+.+..--.. ++|-.+..+ ..++|..+||-.
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~--~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQ--HNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHh--cCCCEEEEC--------CHHHHHHHhCCc
Confidence 344454555789999999999987765421111 223334433 256888888864
No 56
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=30.53 E-value=66 Score=27.84 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHH
Q 016236 263 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDK 303 (392)
Q Consensus 263 ~l~E~~r~i~DAl~a~r~al~~g-vVpGGGa~e~~~s~~L~~ 303 (392)
.|+|.++|++--..=++..+..- -|.|.|++-.+.+-+|+.
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqa 126 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQA 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 67888888777777777666664 789999998888877754
No 57
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=30.48 E-value=68 Score=27.68 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCC
Q 016236 112 IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 184 (392)
Q Consensus 112 ~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~ 184 (392)
.-..++.|.+.|+|++|.+. +. .+ .+..+.|+.++||.++....
T Consensus 65 ~~evi~~I~~~G~PviVAtD-V~----------------------p~------P~~V~Kia~~f~A~ly~P~~ 108 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATD-VS----------------------PP------PETVKKIARSFNAVLYTPER 108 (138)
T ss_pred HHHHHHHHHHcCCEEEEEec-CC----------------------CC------cHHHHHHHHHhCCcccCCCC
Confidence 34567788899999876332 21 11 23489999999999998743
No 58
>PLN02512 acetylglutamate kinase
Probab=28.08 E-value=1.2e+02 Score=29.71 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=27.7
Q ss_pred HhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC--cccCCcH
Q 016236 244 LAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGV 292 (392)
Q Consensus 244 la~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g--vVpGGGa 292 (392)
|.++.|++.+|++||+.-.. ++...++.+.+...+. .-.. +|.|||.
T Consensus 42 i~~~~~~tiVIKlGGs~i~d-~~~~~~~~~di~~l~~-~g~~iVlVHGgG~ 90 (309)
T PLN02512 42 IQRFRGKTVVVKYGGAAMKD-PELKAGVIRDLVLLSC-VGLRPVLVHGGGP 90 (309)
T ss_pred HHHHCCCeEEEEECCeeccC-hhHHHHHHHHHHHHHH-CCCCEEEEECCcH
Confidence 45677899999999987322 1233334444433321 1112 6899998
No 59
>PRK00153 hypothetical protein; Validated
Probab=27.56 E-value=3.3e+02 Score=21.96 Aligned_cols=34 Identities=21% Similarity=0.558 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHhhhc------CCeeEEEEcCCc
Q 016236 222 QERCEQLRSTIKLSTSDKLKDRLAKLS------GGYAVLKVCGHG 260 (392)
Q Consensus 222 ~~r~~~l~~~l~~~~s~~l~~Rla~l~------g~~~tI~vrG~t 260 (392)
-...+.+|+++ ++++++|+..+ ||..+|.+.|.-
T Consensus 9 ~~qaq~~q~~~-----~~~q~~l~~~~~~~~s~~G~V~V~v~G~~ 48 (104)
T PRK00153 9 MKQAQQMQEKM-----QKMQEELAQMEVEGEAGGGLVKVTMTGKK 48 (104)
T ss_pred HHHHHHHHHHH-----HHHHHHHhccEEEEEECCCeEEEEEecCc
Confidence 34444555555 56677777776 888999999864
No 60
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.48 E-value=2.4e+02 Score=21.81 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCCccchhhHHHHHHHHhCCe
Q 016236 115 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 178 (392)
Q Consensus 115 ~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~ 178 (392)
.++.+.+-...|||+++|+++.....+..--.. .+|-.+..+ ..++|..++|-.
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~--~~Vp~~~~~--------s~~eLG~a~G~~ 72 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANE--KGVPVSKVD--------SMKKLGKACGIE 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHH--cCCCEEEEC--------CHHHHHHHHCCC
Confidence 344454555789999999999866544310001 122333333 246788888853
No 61
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=24.83 E-value=3.8e+02 Score=21.69 Aligned_cols=35 Identities=17% Similarity=0.476 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHhhhc------CCeeEEEEcCCcH
Q 016236 222 QERCEQLRSTIKLSTSDKLKDRLAKLS------GGYAVLKVCGHGK 261 (392)
Q Consensus 222 ~~r~~~l~~~l~~~~s~~l~~Rla~l~------g~~~tI~vrG~t~ 261 (392)
-...+++|+++ ++++++|+... ||..+|.+.|.-+
T Consensus 11 ~kqaq~mQ~k~-----~~~q~eL~~~~v~g~sggGlV~V~~~G~~~ 51 (102)
T TIGR00103 11 MKQAQQMQEKM-----KKLQEEIAQFEVTGKSGAGLVTVTINGNLE 51 (102)
T ss_pred HHHHHHHHHHH-----HHHHHHHhccEEEEEECCCEEEEEEEcCce
Confidence 34444455555 55667777666 7889999998643
No 62
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.62 E-value=38 Score=35.19 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhc
Q 016236 268 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQ 305 (392)
Q Consensus 268 ~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~ 305 (392)
+|.+.||+..+|++.+-=+|.|||+-+-.+..+|..+.
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~ 253 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFA 253 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHH
Confidence 45678899999988876699999998888888887664
No 63
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=24.29 E-value=3.1e+02 Score=26.12 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=27.2
Q ss_pred HhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcC--cccCCcHH
Q 016236 244 LAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGVA 293 (392)
Q Consensus 244 la~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~g--vVpGGGa~ 293 (392)
|.++.++..+|++||+.-..- +..+++.+-+...+. .... +|.|||..
T Consensus 9 i~~~~~~~~ViKlGGs~i~~~-~~~~~~~~~i~~l~~-~g~~~ViVhG~g~~ 58 (279)
T cd04250 9 IQKFRGKTVVIKYGGNAMKDE-ELKESFARDIVLLKY-VGINPVVVHGGGPE 58 (279)
T ss_pred HHHHcCCEEEEEEChHHhcCc-cHHHHHHHHHHHHHH-CCCCEEEEcCCcHH
Confidence 345667899999999873211 223344444433222 2223 78999883
No 64
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.99 E-value=79 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=28.6
Q ss_pred eecCceeeecccccCC-----HHHHHHHHHHHHhcCCCEEEEecCcc
Q 016236 93 VLDGALVLIYDTKISN-----SNVIRQASLPCMMQGQSLLVVAEDVE 134 (392)
Q Consensus 93 ~l~~~~Il~~d~~i~~-----~~~~~~~l~~i~~~g~~lvi~~~~i~ 134 (392)
-+.+|.++++|.+... .+.+..++..+.+.|+.++++.-+.+
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 142 VAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 3468888888887543 24567777777666777777765543
No 65
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.95 E-value=1.3e+02 Score=24.98 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=30.4
Q ss_pred ecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHh
Q 016236 101 IYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIAT 143 (392)
Q Consensus 101 ~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~ 143 (392)
+.|+ ++++...+.++.+.++|+|+|+-.-+++++-+..|..
T Consensus 71 vIDf--T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 71 VIDF--TNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEE--S-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEc--CChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 4444 3788888999999999999999999998877776554
No 66
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=22.84 E-value=3e+02 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHHHHhcCCCEEEEecCcchhhhhhH
Q 016236 115 ASLPCMMQGQSLLVVAEDVENEVLGDI 141 (392)
Q Consensus 115 ~l~~i~~~g~~lvi~~~~i~~~al~~L 141 (392)
.++.+.+..+.|||++.|+++.....+
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i 50 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDI 50 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHH
Confidence 345555555788888888877666544
No 67
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=1.8e+02 Score=28.09 Aligned_cols=60 Identities=23% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhccc-----------HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHH
Q 016236 222 QERCEQLRSTIKLSTS-----------DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 281 (392)
Q Consensus 222 ~~r~~~l~~~l~~~~s-----------~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~a 281 (392)
.+|++-++..|...-+ ..|+.||++.+.|.++++.---+=+.+-+.+|.--+|+-+.-.|
T Consensus 225 ~dRleRl~aAl~IAv~~p~qvhr~dA~~wla~rl~~~~~ga~~vv~Hsi~wQYLpd~erqa~~aliaaagA 295 (350)
T COG4427 225 TDRLERLRAALAIAVNIPAQVHRADAHDWLAGRLATQTDGALHVVYHSIAWQYLPDAERQAGRALIAAAGA 295 (350)
T ss_pred hhHHHHHHHHHHHHHhCCcccchhHHHHHHHhhhhhcCCCceEEEeeehhhhhCcHHHHHHHHHHHHHhhc
Confidence 4677777777665422 79999999999999999999888888888888888877766543
No 68
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=21.92 E-value=1.7e+02 Score=26.67 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=18.6
Q ss_pred EEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHH
Q 016236 253 VLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293 (392)
Q Consensus 253 tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~ 293 (392)
+|++||+--..+..+-+.+ .... -.+=.+|||||..
T Consensus 1 vvKiGGsl~~~~~~~~~~l----~~~~-~~~v~iV~GGG~~ 36 (203)
T cd04240 1 VVKIGGSLIREAVRLLRWL----KTLS-GGGVVIVPGGGPF 36 (203)
T ss_pred CEEEcccccccHHHHHHHH----Hhcc-CCCEEEEcCCcHH
Confidence 3788998743322222222 1111 1122499999997
No 69
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=21.24 E-value=89 Score=29.84 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=24.0
Q ss_pred EEEEcCCcHhHHHhHHHHHHHHHHHHH
Q 016236 253 VLKVCGHGKAEVREKKLKITNALHAVQ 279 (392)
Q Consensus 253 tI~vrG~t~~~l~E~~r~i~DAl~a~r 279 (392)
||+++| ++..++..+|.|+|-+++.+
T Consensus 122 TIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 122 TIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred eEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 999999 77899999999999999985
No 70
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=21.06 E-value=4.4e+02 Score=21.13 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCEEEEec-CcchhhhhhHHhhc-cCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecC
Q 016236 113 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDF-TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 182 (392)
Q Consensus 113 ~~~l~~i~~~g~~lvi~~~-~i~~~al~~L~~n~-~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~ 182 (392)
..+|....-.=.|+|.+.+ ++++.++..+-..- .+..++|=..+.. .+.+++..+.||..||+.++..
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~--~~~~~e~a~~i~~~~~a~~Vq~ 75 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATED--REDKTLIAEALVKETGACNVQV 75 (95)
T ss_pred HHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCC--hhHHHHHHHHHHHHHCCEEEEE
Confidence 3455554444479998876 89999988655321 1222344433222 3447778899999999998854
No 71
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.03 E-value=1.5e+02 Score=25.98 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH
Q 016236 314 GVQIVQNALKMAAYLIASNAGVDGSVI 340 (392)
Q Consensus 314 g~~~~a~AL~~~p~~La~NaG~d~~~v 340 (392)
-++++.+.|+..|=+|-++||+.|..+
T Consensus 102 ~~Kav~q~LetlPD~LERd~gL~p~~v 128 (152)
T PF07278_consen 102 MAKAVVQVLETLPDILERDAGLPPEQV 128 (152)
T ss_pred HHHHHHHHHHHhhHHHHhcCCCCHHHH
Confidence 467889999999999999999999765
No 72
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.64 E-value=2.7e+02 Score=22.15 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhccc--HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHc
Q 016236 223 ERCEQLRSTIKLSTS--DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 284 (392)
Q Consensus 223 ~r~~~l~~~l~~~~s--~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~ 284 (392)
...+.++.++..... +.|+..+..+.|.- +.+-|-.++..++..++.||+-||+--..
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ged----L~~Ls~~eL~~LE~~Le~aL~~VR~rK~~ 71 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGED----LESLSLKELQQLEQQLESALKRVRSRKDQ 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344455555554444 77888888888864 67778899999999999999999987664
No 73
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=20.40 E-value=96 Score=23.38 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=23.6
Q ss_pred EcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHH
Q 016236 256 VCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVAL 294 (392)
Q Consensus 256 vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e 294 (392)
|.|.|+ +|+|.-|.||+..- ++..+||=|+.+
T Consensus 13 v~g~s~---eel~~~I~daIqsg----EEk~LPGLGVlF 44 (68)
T PRK02955 13 VSGNSK---EELEGTIVDAIQSG----EEKMLPGLGVLF 44 (68)
T ss_pred ccCCCH---HHHHHHHHHHHhcc----chhcCCcchhHH
Confidence 567776 56677788887543 567999999854
No 74
>COG4996 Predicted phosphatase [General function prediction only]
Probab=20.03 E-value=2e+02 Score=24.83 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=50.1
Q ss_pred eecCceeeecccccCCH--------HHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEecc
Q 016236 93 VLDGALVLIYDTKISNS--------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAA 158 (392)
Q Consensus 93 ~l~~~~Il~~d~~i~~~--------~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~ 158 (392)
.+++|+-.+...+|.+. .++.++++.++.+|.-+=..++.+.+.|++.|..-.+-..+-..+++.-
T Consensus 19 sl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePh 92 (164)
T COG4996 19 SLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPH 92 (164)
T ss_pred hcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCC
Confidence 46667666666666553 4788999999999976668899999999998887666666677777753
Done!