BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016237
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 630 bits (1624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/389 (76%), Positives = 333/389 (85%)
Query: 4 SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT 63
S R+VL+LCGDY EDYE VPFQAL AFG++V CPGKK+GD CPTAVH GHQT
Sbjct: 8 SXANSRTVLILCGDYXEDYEVXVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQT 67
Query: 64 YSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 123
Y E+RGHNF LNATFDE+D SKYDGLVIPGGRAPEYLA+ SV++LV++FS SGK IASI
Sbjct: 68 YFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASI 127
Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP 183
HGQLILAAAD V GRKCTAY V P L+AAGA W+EP T CVVDG++IT ATYEGHP
Sbjct: 128 XHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHP 187
Query: 184 EFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDS 243
EFI+LF+KALGG ITG++KRILFLCGDY EDYEV VPFQSLQAL C VDAVCP+KKAGD
Sbjct: 188 EFIQLFVKALGGKITGANKRILFLCGDYXEDYEVKVPFQSLQALGCQVDAVCPEKKAGDR 247
Query: 244 CPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALV 303
CPTA+HDFEGDQTYSEKPGH F LT NF+ + S YDALV+PGGRAPEYLALNE+V+ +V
Sbjct: 248 CPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIV 307
Query: 304 KDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTD 363
K+F ++KPVASI HGQQILAAAGVLKG+KCTAYPAVKLNV+L G +WLEPDPIDRCFTD
Sbjct: 308 KEFXNSEKPVASIXHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTD 367
Query: 364 GNLVSGAAWPGHPEFISQLMALLGIQVLF 392
GNLV+GAAWPGHPEF+SQL ALLGIQV F
Sbjct: 368 GNLVTGAAWPGHPEFVSQLXALLGIQVSF 396
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 140/200 (70%)
Query: 191 KALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHD 250
+ +G + + +L LCGDY EDYEV VPFQ+LQA V VCP KKAGDSCPTAVHD
Sbjct: 2 QQMGRGSXANSRTVLILCGDYXEDYEVXVPFQALQAFGITVHTVCPGKKAGDSCPTAVHD 61
Query: 251 FEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAK 310
F G QTY E GHNFTL A F+ VD+S YD LV+PGGRAPEYLAL +V+ LVK+F +
Sbjct: 62 FCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSG 121
Query: 311 KPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGA 370
KP+ASI HGQ ILAAA + G+KCTAY V +++ AGA W+EP D C DG+L++ A
Sbjct: 122 KPIASIXHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAA 181
Query: 371 AWPGHPEFISQLMALLGIQV 390
+ GHPEFI + LG ++
Sbjct: 182 TYEGHPEFIQLFVKALGGKI 201
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 24/184 (13%)
Query: 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
VL L + ED E + P+ L G V A S T + G
Sbjct: 2 KVLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHG 45
Query: 70 HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
++ ++ TFD+++P ++D LV+PGGRAPE + +N+ + + RK + GK +ASICHG I
Sbjct: 46 YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQI 105
Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT----YEGHPEF 185
L +A V++GRK T+YP +K I AG W++ E VVDGN ++ Y EF
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDXINAGVEWVDAE----VVVDGNWVSSRVPADLYAWXREF 161
Query: 186 IRLF 189
++L
Sbjct: 162 VKLL 165
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 20/166 (12%)
Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG 262
++LFL + ED E+ P+ L+ E H + FE T + K G
Sbjct: 2 KVLFLTANEFEDVELIYPYHRLKE-EGH--------------EVYIASFE-RGTITGKHG 45
Query: 263 HNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQI 322
++ + F+ V+ +DALV+PGGRAPE + LNE +++ + KPVASICHG QI
Sbjct: 46 YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQI 105
Query: 323 LAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
L +AGVL+G+K T+YP +K + + AG W++ + + DGN VS
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDXINAGVEWVDAEVV----VDGNWVS 147
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSET 67
VL L D ED E + P + G V A GK +G
Sbjct: 4 KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 45
Query: 68 RGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
G++ ++ TF+E+DP ++D LV+PGG+APE + +N+ + + R+ K +ASICHG
Sbjct: 46 HGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGP 105
Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHP 183
IL +A V+KGR+ T+ ++ +I AGA WI+ E VVDGN ++ G Y
Sbjct: 106 QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----VVVDGNWVSSRHPGDLYAWMR 161
Query: 184 EFIRLF 189
EF++L
Sbjct: 162 EFVKLL 167
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 203 RILFLCGDYMEDYEVAVPFQSL--QALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEK 260
++LFL D ED E+ P + + E +V + K G K
Sbjct: 4 KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 45
Query: 261 PGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320
G++ + FE VD +DALV+PGG+APE + LNE + + + E KPVASICHG
Sbjct: 46 HGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGP 105
Query: 321 QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS----GAAWPGHP 376
QIL +A VLKG++ T+ ++ +V+ AGA W++ + + DGN VS G +
Sbjct: 106 QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVV----VDGNWVSSRHPGDLYAWMR 161
Query: 377 EFISQL 382
EF+ L
Sbjct: 162 EFVKLL 167
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 25/194 (12%)
Query: 6 GGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS 65
G + + +L D ED E P A +K+G T + + G
Sbjct: 21 GLSKKIAVLITDEFEDSEFTSP-------------ADEFRKAGHEVIT-IEKQAGKTVKG 66
Query: 66 ETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125
+ + ++ + DE+ P+++D L++PGG +P+YL ++ + R F NSGK + +ICH
Sbjct: 67 KKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICH 126
Query: 126 GQLILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEG 181
G +L +ADV++GRK TA VKP++I AGA + + E VVD + ++T T +
Sbjct: 127 GPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDD 179
Query: 182 HPEFIRLFLKALGG 195
P F R L+ LG
Sbjct: 180 LPAFNREALRLLGA 193
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 199 GSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYS 258
G K+I L D ED E P + V + +K+AG +T
Sbjct: 21 GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEV--ITIEKQAG-------------KTVK 65
Query: 259 EKPGH-NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASIC 317
K G + T+ + + V + +DAL++PGG +P+YL + + +DF+ + KPV +IC
Sbjct: 66 GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAIC 125
Query: 318 HGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPE 377
HG Q+L +A V++G+K TA + ++V AGA + + + + LV+ P
Sbjct: 126 HGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV---VDKDQLVTSRTPDDLPA 182
Query: 378 FISQLMALLG 387
F + + LLG
Sbjct: 183 FNREALRLLG 192
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
K+I L D +E+ E+ P +++A + + + P + +GD +P
Sbjct: 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLE-------PGEIQSMKGDI----EP 58
Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQ 320
+ + V VS YD L++PGG P+ L L E + V+D +A KP+A+I HG
Sbjct: 59 QEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGP 118
Query: 321 QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFIS 380
L+ G+ +G K T++ ++K + LAGA W++ + C TD +V+ P F
Sbjct: 119 WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD----EECVTDKGVVTSRKPDDLPAFNK 174
Query: 381 QLM 383
+++
Sbjct: 175 KIV 177
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 9 RSVLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQT 63
+ + +L D +E+ E P A+ A G +S++ GD+ P
Sbjct: 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQ---------- 59
Query: 64 YSETRGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIAS 122
+ ++ E+ S YDGL++PGG P+ L + + + VR ++GK IA+
Sbjct: 60 ------EKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAA 113
Query: 123 ICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH 182
I HG L+ + +G K T++ +K L AGA W++ E CV D ++T +
Sbjct: 114 IXHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE----CVTDKGVVTSRKPDDL 169
Query: 183 PEF 185
P F
Sbjct: 170 PAF 172
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 3 NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
++ GK+ V +L +ED E ++P L G V V S ++
Sbjct: 5 HNNSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEV---------------VVLGSRXNE 49
Query: 63 TYSETRGH-NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121
Y RG + + T E S++D +VIPGG AP+ N + + V++ GK +A
Sbjct: 50 KYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQGKLVA 109
Query: 122 SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 175
++ HG +L D+++G++ T + + AGA +++ A VVDGN+IT
Sbjct: 110 AVXHGPQVLIEGDLLRGKQATGFIAISKDXXNAGADYLDE----ALVVDGNLIT 159
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 22/188 (11%)
Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
K++ L +ED E +P L K+AG V ++ Y K
Sbjct: 11 KKVAILIEQAVEDTEFIIPCNGL-------------KQAG--FEVVVLGSRXNEKYKGKR 55
Query: 262 GHNFTLTANFESVDV--SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319
G + A+ + + S +DA+V+PGG AP+ N N + V++ E K VA++ HG
Sbjct: 56 GR-LSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQGKLVAAVXHG 114
Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFI 379
Q+L +L+GK+ T + A+ + AGA +L+ + DGNL++ F
Sbjct: 115 PQVLIEGDLLRGKQATGFIAISKDXXNAGADYLD----EALVVDGNLITSREPGDLAIFT 170
Query: 380 SQLMALLG 387
+ +++ LG
Sbjct: 171 TAILSRLG 178
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 75 NATFDEIDPSKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILAA 132
+ + ++ K+D +V+PGG AM +S V DL+R + G IA+IC +LA
Sbjct: 57 DTSLAQVASDKFDVVVLPGGLGGSN-AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115
Query: 133 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYE 180
V G+ T+YP +KP L+ S+++ +T+ V DGN+IT G YE
Sbjct: 116 HGVASGKSLTSYPSMKPQLV-NNYSYVDDKTV---VKDGNLITSRGPGTAYE 163
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKP----VASICHGQQILAAAGVLKGKKC 334
+D +V+PGG A+ E+ +LV D + +++ +A+IC +LA GV GK
Sbjct: 68 FDVVVLPGGLGGSN-AMGES--SLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSL 124
Query: 335 TAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
T+YP++K L+ S+++ + + DGNL++
Sbjct: 125 TSYPSMKPQ-LVNNYSYVDDKTVVK---DGNLIT 154
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 71 NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
L AT D D + IPGG L + + +R+ + + + S+C G L+L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
L A D D + +PGG L + +A ++ + V S+C G +L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
AAG+L+GK+ T + A + GA + +R DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 71 NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
L AT D D + IPGG L + + +R+ + + + S+C G L+L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
L A D D + +PGG L + +A ++ + V S+C G +L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
AAG+L+GK+ T + A + GA + +R DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 46 KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGG-RAPEYLAMND 104
+ G TA S G+ + +RG +A E+ +YD +V+PGG + E +
Sbjct: 27 RGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST 86
Query: 105 SVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVK 148
+++ V++F SG+ +A+IC +L D+ T +P +K
Sbjct: 87 LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLK 131
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTA 336
L VPGG ++N I + + ++ K + S+C G +L+ AG+L GK+ T
Sbjct: 69 LFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATT 123
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVK 148
L +PGG +D+ I+ + K I S+C G +L+ A ++ G++ T
Sbjct: 69 LFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSF 128
Query: 149 PVLIAAGAS--WIEPETMAACVVDGNIITGA 177
+ W++ A V DGNI T +
Sbjct: 129 KWVTEQNEDVLWVKE---ARWVKDGNIYTSS 156
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 71 NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
L A D D + +PGG L + +A ++ + V S+ G +L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
AAG+L+GK+ T + A + GA + +R DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 71 NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
L A D D + +PGG L + +A ++ + V S+ G +L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
AAG+L+GK+ T + A + GA + +R DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 71 NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
L A D D + +PGG L + +A ++ + V S+ G +L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
AAG+L+GK+ T + A + GA + +R DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 17/146 (11%)
Query: 2 ANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH 61
A +G + +L+ E+ E ++ L+ G V A G K Q G
Sbjct: 3 AXEQGXSKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKL---------QVQG- 52
Query: 62 QTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTI 120
+RG T + +D L +PGG + A + +++ L+ FS GK +
Sbjct: 53 -----SRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLV 107
Query: 121 ASICHG-QLILAAADVVKGRKCTAYP 145
A+IC L+ A G + T +P
Sbjct: 108 AAICATPALVFAKQQKFVGARXTCHP 133
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 265 FTLTANFESVDVSGYDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASIC 317
T E+ +DAL +PGG + A + ++AL+ F + K VA+IC
Sbjct: 58 LTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIC 111
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 89 LVIPGGRAPEYLAMNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPV 147
L PGG A +D+ + K I S+C G LIL AA ++KG K T++
Sbjct: 88 LFAPGGTDGTLAAASDAETLAFXADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSC 147
Query: 148 KPVLIAAGASWIEPETMAACVVDGNIITGA 177
+ L GA T A V D N ITGA
Sbjct: 148 RDALAGFGAI----PTEARVVRDRNRITGA 173
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 282 LVVPGGRAPEYLALNE-NVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAV 340
L PGG A ++ +A D K + S+C G IL AAG+LKG K T++ +
Sbjct: 88 LFAPGGTDGTLAAASDAETLAFXADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSC 147
Query: 341 KLNVLLAGASWLEPDPIDRCFTDGNLVSGA 370
+ + GA E R D N ++GA
Sbjct: 148 RDALAGFGAIPTEA----RVVRDRNRITGA 173
>pdb|1U9C|A Chain A, Crystallographic Structure Of Apc35852
Length = 224
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 196 TITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDS--CPTAVHDFEG 253
TIT K L+L E AVP+ Q E D + G+ P +++ E
Sbjct: 17 TITDDHKTGLWL-------EEFAVPYLVFQ--EKGYDVKVASIQGGEVPLDPRSIN--EK 65
Query: 254 DQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKP 312
D +++E TA D G+DA+ +PGG + NE + +++ F E +
Sbjct: 66 DPSWAEAEA-ALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRI 124
Query: 313 VASICHGQQILAAAG------VLKGKKCTAYP-----AVKLNV----------LLAGASW 351
+A++ HG L A ++KGK T++ V L+V L GA++
Sbjct: 125 IAAVXHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANF 184
Query: 352 LEPDP-IDRCFTDGNLVSG 369
+ D DGNL++G
Sbjct: 185 VRGGKWTDFSVRDGNLITG 203
>pdb|2FEX|A Chain A, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|B Chain B, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|C Chain C, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
Length = 188
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
G T +++++D DALV+PGG + E ++ LVK F + + VA IC
Sbjct: 47 GLKVTPDTSYDALDPVDIDALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAAS 105
Query: 322 ILAAAGVLKGKKCT--------AYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWP 373
L GVL T AYPA + G + P R +DG +V+ AA
Sbjct: 106 ALGGTGVLNDVAHTGNALASHKAYPAYR------GEAHYRDQP--RAVSDGGVVT-AAGS 156
Query: 374 GHPEFISQLMALLGI 388
F +++ LG+
Sbjct: 157 APVSFAVEILKSLGL 171
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 55 VHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS 114
VH + + G + ++D +DP D LVIPGG + E D + LV++F
Sbjct: 33 VHATPDGXPVTSXGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAAD-LGGLVKRFR 91
Query: 115 NSGKTIASIC 124
+ + +A IC
Sbjct: 92 DRDRLVAGIC 101
>pdb|3BHN|A Chain A, Crystal Structure Of A Dj-1PFPI-Like Protein (Shew_2856)
From Shewanella Loihica Pv-4 At 1.76 A Resolution
Length = 236
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 160
A+ D K S + I SIC G +L ++KG+K T P K VL G +
Sbjct: 96 ALQDENFXSALKLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGXGGDVQD 155
Query: 161 PETMAACVVDGNIIT 175
V++GNI T
Sbjct: 156 ----LPLVIEGNIAT 166
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVK 341
L+ G R +EN + +K +++ + SIC G +L G+LKGKK T P K
Sbjct: 85 LITSGYRGIPAALQDENFXSALK-LDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAK 143
>pdb|3N7T|A Chain A, Crystal Structure Of A Macrophage Binding Protein From
Cocci Immitis
Length = 247
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 42/227 (18%)
Query: 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP----GKKSGDVCPTAVHQSTGHQ 62
GKR+ L EA+ PF L A G VD A G + + +
Sbjct: 27 GKRTGLFFS-------EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKV 79
Query: 63 TYSETRGHNFALNATF---DEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGK 118
+SE +N ++ P Y + + GG Y + ++ + G
Sbjct: 80 LHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGG 139
Query: 119 TIASICHGQLILAAA------DVVKGRKCTAYPPVKPVLI-------------------A 153
I ++CHG +L V+K + T + ++I
Sbjct: 140 VIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQT 199
Query: 154 AGASWIEPETMAA--CVVDGNIITGATYEGHPEFIRLFLKALGGTIT 198
A A ++ PE C VDG I+TGA + R +K G +
Sbjct: 200 ANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGIVN 246
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 84 SKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
++ DGL++PGG + + D+ ++ +R+F+ GK + C G +ILA
Sbjct: 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILA 86
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 84 SKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
++ DGL++PGG + + D+ ++ +R+F+ GK + C G +ILA
Sbjct: 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILA 86
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 259 EKPGHNFTLTANFESVDVSGYDALVVPG-GRAPEYL--ALNENVIALVKDFMEAKKPVAS 315
E G+ L + + ++SG L++PG G ++ N +++++E+ KP+
Sbjct: 25 EHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMG 84
Query: 316 ICHGQQILAAAGV 328
IC G Q L A V
Sbjct: 85 ICVGLQALFAGSV 97
>pdb|2RK3|A Chain A, Structure Of A104t Dj-1
Length = 197
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 59 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 118
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 119 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 162
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 59 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 118
Query: 327 GVLKGKKCTAYPAVKLNVLLAG 348
+ G K T +P K ++ G
Sbjct: 119 EIGFGSKVTTHPLAKDKMMNGG 140
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 55 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 114
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 115 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 158
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAG 348
+ G K T +P K ++ G
Sbjct: 116 EIGCGSKVTTHPLAKDKMMNGG 137
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 11 VLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
+L CG D E EA++ L V+ P K V +S G
Sbjct: 29 ILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVE 88
Query: 69 GHNFALNATFD--EIDPSKYDGLVIPGGR--APEYLAM------NDSVI----DLVRKFS 114
A + +D +I ++D LVIPGG A + + ND ++ + VR+F
Sbjct: 89 SARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFY 148
Query: 115 NSGKTIASIC 124
N+ K I ++C
Sbjct: 149 NAKKPIGAVC 158
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 270 NFESVDVSGYDALVVPGGR--APEYLAL----NENVIAL------VKDFMEAKKPVASIC 317
+ E + V +D LV+PGG A + L EN L V++F AKKP+ ++C
Sbjct: 99 DIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVC 158
Query: 318 HGQQILAA 325
++ A
Sbjct: 159 ISPAVVVA 166
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVK 341
+ G K T +P K
Sbjct: 116 EIGFGSKVTTHPLAK 130
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVK 341
+ G K T +P K
Sbjct: 116 EIGFGSKVTTHPLAK 130
>pdb|3B38|A Chain A, Structure Of A104v Dj-1
Length = 192
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A IC G L A
Sbjct: 59 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAH 118
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P K + ++ G + + +R DG L+ + PG
Sbjct: 119 EIGFGSKVTTHPLAK-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 162
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 269 ANFESVDVSG-YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
A+ E G YD +V+PGG + L+ + V ++K+ K +A+IC G L A
Sbjct: 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 115
Query: 327 GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
+ G K T +P + + ++ G + + +R DG L+ + PG
Sbjct: 116 EIGFGSKVTTHPLAR-DKMMNGGHYTYSE--NRVEKDG-LILTSRGPG 159
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 306 FMEAKKPVASICHGQQILAAA--GVLKGKKCTAYPAVKLNVL 345
F+E K P+ IC+G Q +A G +K K + Y +N+L
Sbjct: 79 FLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNIL 120
>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
pdb|1R9G|B Chain B, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
Length = 216
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 84 SKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
++ DGL++PGG + + D+ + +R+F+ GK C G +ILA
Sbjct: 57 NEVDGLILPGGESTTXRRLIDTYQFXEPLREFAAQGKPXFGTCAGLIILA 106
>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|B Chain B, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|C Chain C, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|D Chain D, Schizosaccharomyces Pombe Dj-1
Length = 194
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFE--GDQTYSEK 260
++ D ++ E + P+ + E +D+V + D D E +++Y E
Sbjct: 6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENK-DRLVKMSRDVEMYANRSYKEI 64
Query: 261 PGHNFTLTANFESVDVSGYDALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHG 319
P + +F YD ++PGG + L+ V +VK+F + +
Sbjct: 65 PSAD-----DF----AKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXA 115
Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLE 353
+ A L K+ T +P+V+ + G +L+
Sbjct: 116 GTLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD 149
>pdb|3CNE|A Chain A, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|B Chain B, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|C Chain C, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|D Chain D, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
Length = 175
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 85 KYDGLVIPGGRAPEYLAM------NDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138
++D LV G A N + ++++ F GK C G + KG
Sbjct: 66 EFDALVFSCGDAVPVFQQYANQPYNVDLXEVIKTFGEKGKXXIGHCAGAXXFDFTGITKG 125
Query: 139 RKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 175
+K +P KP + A+ + E +DGN T
Sbjct: 126 KKVAVHPLAKPAIQNGIATDEKSE------IDGNFFT 156
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 279 YDALVVPGGRAPEYLA------LNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGK 332
+DALV G A N ++ ++K F E K C G G+ KGK
Sbjct: 67 FDALVFSCGDAVPVFQQYANQPYNVDLXEVIKTFGEKGKXXIGHCAGAXXFDFTGITKGK 126
Query: 333 KCTAYPAVKLNVLLAGASWLEPDPIDRCF---TDGNLVSGAAWPGHPEFISQL 382
K +P K + G + E ID F D N + W P+ I L
Sbjct: 127 KVAVHPLAK-PAIQNGIATDEKSEIDGNFFTAQDENTI----WTXLPKVIEAL 174
>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|B Chain B, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|C Chain C, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|D Chain D, Schizosaccharomyces Pombe Dj-1 T114p Mutant
Length = 194
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFE--GDQTYSEK 260
++ D ++ E + P+ + E +D+V + D D E +++Y E
Sbjct: 6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENK-DRLVKMSRDVEMYANRSYKEI 64
Query: 261 PGHNFTLTANFESVDVSGYDALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHG 319
P + +F YD ++PGG + L+ V +VK+F + +
Sbjct: 65 PSAD-----DF----AKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXA 115
Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLE 353
+ A L K+ T +P+V+ + G +L+
Sbjct: 116 GPLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD 149
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 272 ESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKG 331
E V +SG+D +V GGR N+ L+ D + K + I G Q A A LK
Sbjct: 25 EKVTLSGHDEYIVRGGR---------NLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKD 75
Query: 332 KKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAW 372
A V + + L S + F++ N G W
Sbjct: 76 SLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMW 116
>pdb|3OF3|A Chain A, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|B Chain B, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|C Chain C, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|D Chain D, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|E Chain E, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|F Chain F, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|G Chain G, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|H Chain H, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|I Chain I, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|J Chain J, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|K Chain K, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|L Chain L, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
Length = 241
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 17 DYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNF 72
D M+ Y + V +A +GV AA G K+ +C + H TG QT SE R + F
Sbjct: 169 DVMDKYGIVGVEMEAAGIYGV---AAEYGAKALAICTVSDHIKTGEQTTSEERQNTF 222
>pdb|1VHJ|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHW|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
Length = 253
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 17 DYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNF 72
D M+ Y + V +A +GV AA G K+ +C + H TG QT SE R + F
Sbjct: 171 DVMDKYGIVGVEMEAAGIYGV---AAEYGAKALAICTVSDHIKTGEQTTSEERQNTF 224
>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
Length = 194
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFE--GDQTYSEK 260
++ D ++ E + P+ + E +D+V + D D E +++Y E
Sbjct: 6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENK-DRLVKMSRDVEMYANRSYKEI 64
Query: 261 PGHNFTLTANFESVDVSGYDALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHG 319
P + +F YD ++PGG + L+ V +VK+F + +
Sbjct: 65 PSAD-----DF----AKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXA 115
Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLE 353
+ A L K+ T +P+V+ + G +L+
Sbjct: 116 GVLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD 149
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 285 PGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
PG AP+ A I ++ F+E PV IC G Q+LA A
Sbjct: 242 PGDPAPDDYA-----ITAIQKFLETDIPVFGICLGHQLLALA 278
>pdb|2VJH|B Chain B, The Structure Of Phycoerythrin From Gloeobacter Violaceus
pdb|2VJH|D Chain D, The Structure Of Phycoerythrin From Gloeobacter Violaceus
Length = 177
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 99 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASW 158
Y+A + +D V +++ I S D V G C P LI+AG
Sbjct: 30 YIANGNKRLDAVNAITSNASCIVS-----------DAVSGMICE-----NPGLISAGGXC 73
Query: 159 IEPETMAACVVDGNII 174
MAAC+ DG I+
Sbjct: 74 YTNRRMAACLRDGEIV 89
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 300 IALVKDFMEAKKPVASICHGQQILAAA 326
IALV+ ++A KP+ +IC G Q++ A
Sbjct: 98 IALVRAALDAGKPIFAICRGXQLVNVA 124
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 87 DGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 131
DGLV+PGG + + D + + +++F+ +GK C G ++LA
Sbjct: 62 DGLVLPGGESTTXRRLIDRYGLXEPLKQFAAAGKPXFGTCAGLILLA 108
>pdb|3D54|D Chain D, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|H Chain H, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|L Chain L, Stucture Of Purlqs From Thermotoga Maritima
Length = 213
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 279 YDALVVPGGRA------PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKG 331
Y+ +++PGG + P +A E + + E K + I +G QIL G+LKG
Sbjct: 42 YELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGIXNGFQILIEMGLLKG 100
>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Methanocaldococcus Jannaschii
Length = 186
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 250 DFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEA 309
D E + +K G+ E D+ G DAL++PGG + L + L++ +
Sbjct: 11 DVEEHEEAIKKAGYEAKKVKRVE--DLEGIDALIIPGGESTAIGKLMKKY-GLLEKIKNS 67
Query: 310 KKPVASICHGQQILA 324
P+ C G +L+
Sbjct: 68 NLPILGTCAGMVLLS 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,755,736
Number of Sequences: 62578
Number of extensions: 547084
Number of successful extensions: 1362
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 87
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)