Query 016237
Match_columns 392
No_of_seqs 301 out of 3070
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2764 Putative transcription 100.0 8.2E-35 1.8E-39 246.3 17.6 240 8-288 5-247 (247)
2 TIGR01382 PfpI intracellular p 100.0 5.5E-32 1.2E-36 231.5 16.5 165 10-193 1-165 (166)
3 cd03169 GATase1_PfpI_1 Type 1 100.0 9.7E-32 2.1E-36 232.8 18.0 180 10-193 1-180 (180)
4 cd03134 GATase1_PfpI_like A ty 100.0 1.9E-31 4.1E-36 228.0 15.5 162 10-191 1-164 (165)
5 cd03135 GATase1_DJ-1 Type 1 gl 100.0 2.4E-31 5.2E-36 226.9 15.2 162 11-193 1-163 (163)
6 TIGR01382 PfpI intracellular p 100.0 6.4E-31 1.4E-35 224.9 17.4 166 203-387 1-166 (166)
7 cd03135 GATase1_DJ-1 Type 1 gl 100.0 7E-31 1.5E-35 224.0 16.9 162 204-386 1-163 (163)
8 TIGR01383 not_thiJ DJ-1 family 100.0 8E-31 1.7E-35 227.2 14.5 168 10-197 1-171 (179)
9 cd03169 GATase1_PfpI_1 Type 1 100.0 4.9E-30 1.1E-34 222.1 18.7 180 203-386 1-180 (180)
10 TIGR01383 not_thiJ DJ-1 family 100.0 5.2E-30 1.1E-34 222.1 15.7 167 203-389 1-170 (179)
11 cd03137 GATase1_AraC_1 AraC tr 100.0 4.3E-30 9.4E-35 224.1 14.7 167 11-197 1-175 (187)
12 cd03134 GATase1_PfpI_like A ty 100.0 1.1E-29 2.4E-34 217.0 16.9 162 203-384 1-164 (165)
13 cd03137 GATase1_AraC_1 AraC tr 100.0 1.9E-29 4.2E-34 220.0 15.9 165 204-389 1-174 (187)
14 cd03136 GATase1_AraC_ArgR_like 100.0 1.3E-29 2.8E-34 220.6 14.4 165 11-197 1-173 (185)
15 cd03139 GATase1_PfpI_2 Type 1 100.0 5.8E-30 1.3E-34 222.6 12.0 166 11-197 1-171 (183)
16 cd03147 GATase1_Ydr533c_like T 100.0 2.2E-29 4.8E-34 224.2 15.4 175 18-193 21-231 (231)
17 cd03138 GATase1_AraC_2 AraC tr 100.0 5.4E-29 1.2E-33 218.7 15.1 166 11-197 1-183 (195)
18 cd03136 GATase1_AraC_ArgR_like 100.0 7.5E-29 1.6E-33 215.9 15.2 163 204-389 1-172 (185)
19 cd03140 GATase1_PfpI_3 Type 1 100.0 4.4E-29 9.6E-34 214.1 13.5 163 11-194 1-167 (170)
20 cd03139 GATase1_PfpI_2 Type 1 100.0 5E-29 1.1E-33 216.7 14.0 165 204-389 1-170 (183)
21 PF13278 DUF4066: Putative ami 100.0 4.1E-29 9E-34 213.6 13.3 158 14-191 1-166 (166)
22 PRK04155 chaperone protein Hch 100.0 8.6E-29 1.9E-33 226.0 16.0 189 8-196 49-284 (287)
23 cd03141 GATase1_Hsp31_like Typ 100.0 9E-29 2E-33 220.3 14.7 177 17-193 18-221 (221)
24 cd03138 GATase1_AraC_2 AraC tr 100.0 1.7E-28 3.7E-33 215.5 16.2 165 204-389 1-182 (195)
25 PF13278 DUF4066: Putative ami 100.0 1.1E-28 2.3E-33 211.1 14.3 157 207-384 1-166 (166)
26 PRK09393 ftrA transcriptional 100.0 2.1E-28 4.5E-33 231.4 16.6 169 8-197 9-185 (322)
27 cd03140 GATase1_PfpI_3 Type 1 100.0 1.9E-28 4.2E-33 210.1 14.9 163 204-387 1-167 (170)
28 cd03148 GATase1_EcHsp31_like T 100.0 1.9E-28 4E-33 218.5 14.7 178 16-193 20-231 (232)
29 cd03147 GATase1_Ydr533c_like T 100.0 5.2E-28 1.1E-32 215.4 15.9 176 210-386 20-231 (231)
30 cd03141 GATase1_Hsp31_like Typ 100.0 4.2E-28 9E-33 216.1 14.4 178 209-386 17-221 (221)
31 cd03148 GATase1_EcHsp31_like T 100.0 5.3E-28 1.1E-32 215.6 14.6 175 209-386 20-231 (232)
32 COG4977 Transcriptional regula 100.0 1.7E-27 3.7E-32 218.7 17.8 199 8-227 10-232 (328)
33 COG0693 ThiJ Putative intracel 100.0 5E-27 1.1E-31 204.9 17.5 176 8-197 2-186 (188)
34 PRK04155 chaperone protein Hch 99.9 2.9E-27 6.4E-32 216.0 16.3 179 210-391 72-286 (287)
35 PRK11574 oxidative-stress-resi 99.9 5.1E-27 1.1E-31 206.2 17.3 171 200-389 1-175 (196)
36 KOG2764 Putative transcription 99.9 3.9E-27 8.4E-32 199.8 15.2 171 201-390 5-177 (247)
37 PRK11574 oxidative-stress-resi 99.9 4.7E-27 1E-31 206.4 16.3 171 9-198 3-177 (196)
38 PRK09393 ftrA transcriptional 99.9 1.1E-26 2.4E-31 219.6 17.3 169 199-389 7-184 (322)
39 COG4977 Transcriptional regula 99.9 1.4E-26 3E-31 212.7 16.0 168 200-389 9-185 (328)
40 COG0693 ThiJ Putative intracel 99.9 5.4E-26 1.2E-30 198.3 17.7 176 201-390 2-186 (188)
41 PRK11780 isoprenoid biosynthes 99.9 2.1E-25 4.6E-30 196.4 15.9 165 9-180 2-193 (217)
42 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 9.4E-26 2E-30 188.6 10.4 141 37-194 1-147 (147)
43 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 2.5E-25 5.4E-30 186.1 12.0 141 230-387 1-147 (147)
44 PRK11780 isoprenoid biosynthes 99.9 2E-24 4.3E-29 190.3 16.6 166 201-373 1-193 (217)
45 cd03133 GATase1_ES1 Type 1 glu 99.9 1.6E-24 3.5E-29 189.5 14.4 173 12-190 2-203 (213)
46 cd03133 GATase1_ES1 Type 1 glu 99.9 5.1E-24 1.1E-28 186.3 15.6 167 209-382 11-202 (213)
47 cd03132 GATase1_catalase Type 99.8 9.2E-21 2E-25 157.6 10.7 113 8-136 1-114 (142)
48 cd03132 GATase1_catalase Type 99.8 1.8E-19 3.9E-24 149.9 11.3 112 202-329 2-114 (142)
49 PRK11249 katE hydroperoxidase 99.6 7E-16 1.5E-20 155.9 11.0 115 7-137 596-711 (752)
50 PRK11249 katE hydroperoxidase 99.5 4E-14 8.7E-19 143.2 12.3 115 200-330 596-711 (752)
51 COG3155 ElbB Uncharacterized p 99.3 2.4E-11 5.2E-16 97.8 10.7 180 8-193 1-202 (217)
52 cd01740 GATase1_FGAR_AT Type 1 99.3 3.3E-11 7.2E-16 108.6 10.9 129 11-177 1-136 (238)
53 cd01740 GATase1_FGAR_AT Type 1 99.2 5.3E-11 1.1E-15 107.3 10.4 129 204-370 1-136 (238)
54 PRK03619 phosphoribosylformylg 99.2 9.8E-11 2.1E-15 104.0 10.8 95 9-140 1-102 (219)
55 PRK01175 phosphoribosylformylg 99.2 1.2E-10 2.7E-15 105.5 11.1 100 8-139 3-111 (261)
56 COG3155 ElbB Uncharacterized p 99.1 2.7E-10 5.8E-15 91.8 9.3 165 201-372 1-192 (217)
57 PRK03619 phosphoribosylformylg 99.1 9.8E-10 2.1E-14 97.7 11.7 95 202-333 1-102 (219)
58 PRK01175 phosphoribosylformylg 99.1 6.2E-10 1.4E-14 100.9 10.1 100 200-331 2-110 (261)
59 COG0047 PurL Phosphoribosylfor 99.1 3.8E-10 8.1E-15 97.2 8.0 94 201-331 2-102 (231)
60 COG0047 PurL Phosphoribosylfor 99.1 7.1E-10 1.5E-14 95.5 8.9 94 8-138 2-102 (231)
61 TIGR01737 FGAM_synth_I phospho 99.0 2.1E-09 4.6E-14 96.2 11.7 94 9-139 1-100 (227)
62 TIGR01737 FGAM_synth_I phospho 98.9 1.3E-08 2.9E-13 91.0 11.8 94 202-332 1-100 (227)
63 cd01653 GATase1 Type 1 glutami 98.8 3.8E-08 8.3E-13 76.7 10.1 91 11-130 1-92 (115)
64 PF13507 GATase_5: CobB/CobQ-l 98.8 1.2E-08 2.6E-13 92.3 6.0 100 9-140 2-113 (259)
65 PRK13526 glutamine amidotransf 98.8 1.7E-08 3.7E-13 85.5 6.5 83 9-132 3-87 (179)
66 PRK13527 glutamine amidotransf 98.7 3E-08 6.4E-13 87.2 7.5 91 9-133 1-93 (200)
67 cd01653 GATase1 Type 1 glutami 98.7 1.6E-07 3.4E-12 73.2 10.2 91 204-323 1-92 (115)
68 TIGR03800 PLP_synth_Pdx2 pyrid 98.7 4.1E-08 8.8E-13 84.8 6.6 84 10-133 1-86 (184)
69 PF13507 GATase_5: CobB/CobQ-l 98.6 4E-08 8.7E-13 88.9 5.9 99 202-332 2-112 (259)
70 cd03128 GAT_1 Type 1 glutamine 98.6 2.7E-07 5.9E-12 68.5 8.9 91 11-130 1-92 (92)
71 PRK13527 glutamine amidotransf 98.5 2.8E-07 6.1E-12 81.0 8.1 91 202-326 1-93 (200)
72 PRK13525 glutamine amidotransf 98.5 6.2E-07 1.3E-11 77.9 8.4 85 9-133 2-88 (189)
73 cd03128 GAT_1 Type 1 glutamine 98.5 9.4E-07 2E-11 65.6 8.4 90 205-323 2-92 (92)
74 TIGR03800 PLP_synth_Pdx2 pyrid 98.5 7.1E-07 1.5E-11 77.1 8.5 84 203-326 1-86 (184)
75 PRK13526 glutamine amidotransf 98.5 4.6E-07 1E-11 76.8 6.9 83 202-325 3-87 (179)
76 cd03130 GATase1_CobB Type 1 gl 98.4 1.3E-06 2.7E-11 76.6 9.1 79 23-135 12-93 (198)
77 cd03130 GATase1_CobB Type 1 gl 98.4 1.7E-06 3.7E-11 75.8 9.8 85 210-328 6-93 (198)
78 PRK07053 glutamine amidotransf 98.3 6E-06 1.3E-10 74.2 11.3 95 200-326 1-99 (234)
79 PRK08250 glutamine amidotransf 98.3 5.4E-06 1.2E-10 74.6 10.9 93 9-133 1-100 (235)
80 PLN02832 glutamine amidotransf 98.3 1.9E-06 4.1E-11 77.2 7.6 87 8-134 1-89 (248)
81 PRK13525 glutamine amidotransf 98.3 3.6E-06 7.7E-11 73.2 9.1 86 201-326 1-88 (189)
82 PRK07053 glutamine amidotransf 98.3 6.5E-06 1.4E-10 73.9 11.0 94 8-133 2-99 (234)
83 PRK13143 hisH imidazole glycer 98.3 2.3E-06 5.1E-11 75.1 7.8 87 9-134 1-88 (200)
84 cd01750 GATase1_CobQ Type 1 gl 98.3 2.7E-06 5.9E-11 74.3 7.8 86 11-134 1-89 (194)
85 PRK08250 glutamine amidotransf 98.2 1.4E-05 3E-10 72.0 11.4 93 202-326 1-100 (235)
86 TIGR01857 FGAM-synthase phosph 98.2 7.3E-06 1.6E-10 88.4 10.1 108 8-140 977-1097(1239)
87 PRK13143 hisH imidazole glycer 98.2 8.5E-06 1.8E-10 71.5 8.6 85 203-326 2-87 (200)
88 PLN03206 phosphoribosylformylg 98.1 1E-05 2.2E-10 87.9 10.4 101 8-140 1037-1149(1307)
89 cd01750 GATase1_CobQ Type 1 gl 98.1 1.1E-05 2.4E-10 70.4 8.7 85 205-327 2-89 (194)
90 cd01749 GATase1_PB Glutamine A 98.1 3.9E-06 8.5E-11 72.6 5.7 83 11-133 1-85 (183)
91 PRK06490 glutamine amidotransf 98.1 3E-05 6.6E-10 69.9 11.0 97 198-326 4-102 (239)
92 PRK06490 glutamine amidotransf 98.1 3.4E-05 7.3E-10 69.6 10.6 94 8-133 7-102 (239)
93 TIGR01735 FGAM_synt phosphorib 98.1 1.4E-05 3.1E-10 87.4 9.5 100 8-139 1055-1167(1310)
94 PRK01077 cobyrinic acid a,c-di 98.1 2.1E-05 4.6E-10 77.8 10.0 90 9-133 246-338 (451)
95 CHL00188 hisH imidazole glycer 98.1 1.4E-05 3.1E-10 70.4 7.8 86 9-133 2-90 (210)
96 PRK05297 phosphoribosylformylg 98.0 2.3E-05 4.9E-10 86.1 10.5 99 8-138 1035-1146(1290)
97 cd01741 GATase1_1 Subgroup of 98.0 3.5E-05 7.5E-10 67.0 9.4 91 10-133 1-97 (188)
98 PLN02832 glutamine amidotransf 98.0 2.9E-05 6.2E-10 69.7 8.4 86 201-326 1-88 (248)
99 PHA03366 FGAM-synthase; Provis 98.0 3.4E-05 7.4E-10 84.5 10.6 97 8-137 1028-1137(1304)
100 TIGR01857 FGAM-synthase phosph 97.9 5.8E-05 1.2E-09 81.6 11.3 108 200-332 976-1096(1239)
101 PRK01077 cobyrinic acid a,c-di 97.9 6.3E-05 1.4E-09 74.5 10.6 90 202-326 246-338 (451)
102 cd01741 GATase1_1 Subgroup of 97.9 8E-05 1.7E-09 64.7 10.0 90 204-326 2-97 (188)
103 PRK13141 hisH imidazole glycer 97.9 2.4E-05 5.3E-10 69.0 6.5 84 11-133 2-88 (205)
104 COG0311 PDX2 Predicted glutami 97.9 1.9E-05 4.2E-10 66.0 4.9 49 85-133 38-88 (194)
105 cd01748 GATase1_IGP_Synthase T 97.8 6.1E-05 1.3E-09 66.0 7.6 75 23-133 10-87 (198)
106 TIGR01739 tegu_FGAM_synt herpe 97.8 8.6E-05 1.9E-09 81.1 10.2 98 8-138 929-1039(1202)
107 PRK13146 hisH imidazole glycer 97.8 8.4E-05 1.8E-09 65.7 8.4 88 9-135 2-95 (209)
108 PLN03206 phosphoribosylformylg 97.8 0.00011 2.3E-09 80.2 10.8 100 201-332 1037-1148(1307)
109 cd01749 GATase1_PB Glutamine A 97.8 5.8E-05 1.3E-09 65.3 7.0 70 222-327 15-86 (183)
110 COG0118 HisH Glutamine amidotr 97.8 6.9E-05 1.5E-09 64.0 7.2 88 8-134 1-91 (204)
111 PRK06895 putative anthranilate 97.8 7.5E-05 1.6E-09 65.0 7.7 87 9-133 2-88 (190)
112 TIGR01735 FGAM_synt phosphorib 97.8 0.0001 2.2E-09 80.9 10.0 101 200-332 1054-1167(1310)
113 cd01744 GATase1_CPSase Small c 97.8 8.5E-05 1.8E-09 63.9 7.6 75 219-326 11-85 (178)
114 cd01744 GATase1_CPSase Small c 97.8 6.4E-05 1.4E-09 64.7 6.9 75 26-133 11-85 (178)
115 PRK06895 putative anthranilate 97.8 0.00011 2.5E-09 63.9 8.4 75 217-326 14-88 (190)
116 PRK13141 hisH imidazole glycer 97.8 9.5E-05 2E-09 65.2 7.7 75 216-326 11-88 (205)
117 CHL00188 hisH imidazole glycer 97.7 0.00013 2.9E-09 64.3 8.4 94 201-333 1-106 (210)
118 PRK09065 glutamine amidotransf 97.7 0.00018 3.9E-09 64.9 9.2 50 84-133 53-104 (237)
119 PF07685 GATase_3: CobB/CobQ-l 97.7 5.4E-05 1.2E-09 63.8 5.3 54 275-328 4-60 (158)
120 PRK05297 phosphoribosylformylg 97.7 0.00026 5.7E-09 77.9 10.8 99 201-331 1035-1146(1290)
121 PRK05665 amidotransferase; Pro 97.6 0.00042 9.1E-09 62.5 10.3 50 84-133 56-107 (240)
122 COG1797 CobB Cobyrinic acid a, 97.6 0.00043 9.3E-09 66.1 10.7 91 9-133 246-339 (451)
123 PRK13146 hisH imidazole glycer 97.6 0.00029 6.3E-09 62.2 8.9 88 201-327 1-94 (209)
124 TIGR00379 cobB cobyrinic acid 97.6 0.00024 5.1E-09 70.3 9.1 90 9-133 245-337 (449)
125 cd01748 GATase1_IGP_Synthase T 97.6 0.00024 5.1E-09 62.3 8.1 75 216-326 10-87 (198)
126 PRK09065 glutamine amidotransf 97.6 0.00043 9.3E-09 62.4 9.8 50 277-326 53-104 (237)
127 PF07685 GATase_3: CobB/CobQ-l 97.6 6.5E-05 1.4E-09 63.3 4.0 52 82-133 4-58 (158)
128 PRK05665 amidotransferase; Pro 97.6 0.00048 1.1E-08 62.1 9.8 50 277-326 56-107 (240)
129 COG0118 HisH Glutamine amidotr 97.5 0.00041 8.9E-09 59.3 7.6 87 201-327 1-91 (204)
130 PRK00784 cobyric acid synthase 97.5 0.00031 6.6E-09 70.3 7.9 87 9-134 252-342 (488)
131 TIGR00888 guaA_Nterm GMP synth 97.5 0.00039 8.4E-09 60.4 7.6 77 216-326 10-86 (188)
132 PHA03366 FGAM-synthase; Provis 97.5 0.00064 1.4E-08 74.8 10.7 97 201-330 1028-1137(1304)
133 PRK08007 para-aminobenzoate sy 97.5 0.00031 6.8E-09 60.9 6.5 87 13-133 2-88 (187)
134 PRK08007 para-aminobenzoate sy 97.4 0.00043 9.4E-09 60.0 7.3 87 206-326 2-88 (187)
135 TIGR01855 IMP_synth_hisH imida 97.4 0.0004 8.8E-09 60.7 7.2 75 23-134 10-88 (196)
136 COG1797 CobB Cobyrinic acid a, 97.4 0.00045 9.8E-09 65.9 7.9 90 203-326 247-339 (451)
137 PRK13170 hisH imidazole glycer 97.4 0.00035 7.5E-09 61.1 6.3 82 10-133 2-86 (196)
138 TIGR00888 guaA_Nterm GMP synth 97.4 0.00043 9.3E-09 60.1 6.9 77 23-133 10-86 (188)
139 PRK06774 para-aminobenzoate sy 97.4 0.00049 1.1E-08 60.0 7.2 87 206-326 2-88 (191)
140 PRK07567 glutamine amidotransf 97.4 0.00091 2E-08 60.5 9.1 51 83-133 49-109 (242)
141 PRK07765 para-aminobenzoate sy 97.4 0.00073 1.6E-08 59.9 8.0 80 217-326 13-92 (214)
142 PRK06774 para-aminobenzoate sy 97.4 0.00043 9.3E-09 60.3 6.5 85 13-133 2-88 (191)
143 TIGR00379 cobB cobyrinic acid 97.4 0.00097 2.1E-08 66.0 9.6 90 202-326 245-337 (449)
144 COG0518 GuaA GMP synthase - Gl 97.3 0.0016 3.4E-08 56.8 9.5 55 272-326 39-95 (198)
145 PF01174 SNO: SNO glutamine am 97.3 0.00014 3.1E-09 61.6 2.8 49 85-133 33-84 (188)
146 PRK07765 para-aminobenzoate sy 97.3 0.00074 1.6E-08 59.8 7.6 79 25-133 14-92 (214)
147 TIGR00566 trpG_papA glutamine 97.3 0.00081 1.8E-08 58.4 7.6 76 218-326 13-88 (188)
148 PLN02617 imidazole glycerol ph 97.3 0.0013 2.8E-08 66.0 9.9 87 8-133 6-95 (538)
149 cd01742 GATase1_GMP_Synthase T 97.3 0.00092 2E-08 57.6 7.6 76 24-133 11-86 (181)
150 PRK13181 hisH imidazole glycer 97.3 0.00064 1.4E-08 59.6 6.7 49 85-133 37-88 (199)
151 TIGR01739 tegu_FGAM_synt herpe 97.3 0.0014 3E-08 72.0 10.3 98 201-331 929-1039(1202)
152 PRK07567 glutamine amidotransf 97.3 0.0017 3.6E-08 58.7 9.3 51 276-326 49-109 (242)
153 PRK05637 anthranilate synthase 97.3 0.0014 2.9E-08 57.9 8.4 76 217-326 14-89 (208)
154 cd01742 GATase1_GMP_Synthase T 97.3 0.0014 3E-08 56.5 8.3 76 217-326 11-86 (181)
155 cd03146 GAT1_Peptidase_E Type 97.3 0.00085 1.8E-08 59.4 7.1 96 200-326 30-130 (212)
156 PF00117 GATase: Glutamine ami 97.2 0.00054 1.2E-08 59.7 5.6 80 216-326 9-88 (192)
157 PRK05637 anthranilate synthase 97.2 0.0011 2.4E-08 58.5 7.2 87 9-133 2-89 (208)
158 KOG3210 Imidazoleglycerol-phos 97.2 0.00048 1E-08 56.5 4.4 93 9-133 12-107 (226)
159 COG0518 GuaA GMP synthase - Gl 97.2 0.003 6.5E-08 55.0 9.5 54 80-133 40-95 (198)
160 TIGR00566 trpG_papA glutamine 97.2 0.0012 2.7E-08 57.2 7.0 85 14-133 3-88 (188)
161 TIGR01855 IMP_synth_hisH imida 97.2 0.0017 3.6E-08 56.9 7.7 74 216-326 10-87 (196)
162 PRK13170 hisH imidazole glycer 97.1 0.002 4.3E-08 56.4 7.9 82 203-326 2-86 (196)
163 PRK13896 cobyrinic acid a,c-di 97.1 0.0021 4.6E-08 62.8 8.6 87 203-326 235-324 (433)
164 PRK13142 hisH imidazole glycer 97.1 0.0015 3.2E-08 56.6 6.7 83 11-134 2-87 (192)
165 PRK07649 para-aminobenzoate/an 97.1 0.0015 3.3E-08 57.0 6.6 87 206-326 2-88 (195)
166 cd01745 GATase1_2 Subgroup of 97.1 0.0014 3E-08 57.0 6.3 50 84-133 52-116 (189)
167 CHL00101 trpG anthranilate syn 97.1 0.0014 3.1E-08 56.9 6.4 76 218-326 13-88 (190)
168 PF00117 GATase: Glutamine ami 97.0 0.00087 1.9E-08 58.3 5.0 79 24-133 10-88 (192)
169 PRK13896 cobyrinic acid a,c-di 97.0 0.0031 6.6E-08 61.7 9.1 88 9-133 234-324 (433)
170 cd01743 GATase1_Anthranilate_S 97.0 0.0029 6.3E-08 54.7 8.1 77 217-326 11-87 (184)
171 PLN02617 imidazole glycerol ph 97.0 0.0043 9.4E-08 62.3 10.4 87 201-326 6-95 (538)
172 PRK05670 anthranilate synthase 97.0 0.002 4.3E-08 56.0 7.1 79 215-326 10-88 (189)
173 PRK13566 anthranilate synthase 97.0 0.0028 6E-08 66.0 9.1 90 7-133 525-614 (720)
174 cd03146 GAT1_Peptidase_E Type 97.0 0.0017 3.7E-08 57.5 6.5 96 8-133 31-130 (212)
175 PRK08857 para-aminobenzoate sy 97.0 0.0026 5.7E-08 55.4 7.6 87 206-326 2-88 (193)
176 PRK05670 anthranilate synthase 97.0 0.0022 4.8E-08 55.7 7.0 77 23-133 11-88 (189)
177 CHL00101 trpG anthranilate syn 97.0 0.0018 3.9E-08 56.3 6.4 76 25-133 13-88 (190)
178 PRK12564 carbamoyl phosphate s 97.0 0.0021 4.6E-08 61.3 7.4 75 219-326 190-264 (360)
179 PRK07649 para-aminobenzoate/an 97.0 0.0022 4.7E-08 56.0 6.6 85 13-133 2-88 (195)
180 PRK13181 hisH imidazole glycer 97.0 0.00082 1.8E-08 59.0 4.0 49 278-326 37-88 (199)
181 PRK00784 cobyric acid synthase 97.0 0.003 6.5E-08 63.3 8.5 49 278-326 290-341 (488)
182 PRK12564 carbamoyl phosphate s 96.9 0.0018 4E-08 61.7 6.5 87 9-133 178-264 (360)
183 PRK13152 hisH imidazole glycer 96.9 0.0022 4.7E-08 56.4 6.6 76 23-134 11-90 (201)
184 PRK05282 (alpha)-aspartyl dipe 96.9 0.0022 4.8E-08 57.3 6.7 96 8-135 31-131 (233)
185 COG0311 PDX2 Predicted glutami 96.9 0.00079 1.7E-08 56.6 3.4 50 277-326 37-88 (194)
186 TIGR01815 TrpE-clade3 anthrani 96.9 0.0039 8.5E-08 64.8 9.1 89 8-133 516-604 (717)
187 PRK13566 anthranilate synthase 96.9 0.0054 1.2E-07 63.9 10.1 89 201-326 526-614 (720)
188 PRK08857 para-aminobenzoate sy 96.9 0.0027 5.9E-08 55.3 6.9 85 13-133 2-88 (193)
189 PLN02335 anthranilate synthase 96.9 0.0033 7.1E-08 56.1 7.4 88 9-133 19-107 (222)
190 PRK00758 GMP synthase subunit 96.9 0.0026 5.5E-08 55.1 6.6 69 26-133 14-83 (184)
191 cd03144 GATase1_ScBLP_like Typ 96.9 0.0017 3.7E-08 51.0 4.8 88 10-130 1-90 (114)
192 CHL00197 carA carbamoyl-phosph 96.9 0.0049 1.1E-07 59.1 8.9 88 8-133 192-279 (382)
193 cd01743 GATase1_Anthranilate_S 96.9 0.0037 8.1E-08 54.0 7.5 76 25-133 12-87 (184)
194 PRK14004 hisH imidazole glycer 96.9 0.003 6.6E-08 55.7 6.8 83 11-133 2-88 (210)
195 PLN02335 anthranilate synthase 96.8 0.0054 1.2E-07 54.7 8.2 90 201-326 18-107 (222)
196 cd03144 GATase1_ScBLP_like Typ 96.8 0.0034 7.4E-08 49.3 6.0 45 277-323 43-90 (114)
197 PRK00758 GMP synthase subunit 96.8 0.0055 1.2E-07 53.0 8.0 43 278-326 40-83 (184)
198 cd01745 GATase1_2 Subgroup of 96.8 0.002 4.3E-08 56.0 5.1 50 277-326 52-116 (189)
199 COG0512 PabA Anthranilate/para 96.8 0.0093 2E-07 50.9 8.7 96 206-335 4-108 (191)
200 PRK05282 (alpha)-aspartyl dipe 96.7 0.011 2.5E-07 52.8 9.4 112 180-327 14-130 (233)
201 TIGR01815 TrpE-clade3 anthrani 96.7 0.009 1.9E-07 62.1 10.0 89 201-326 516-604 (717)
202 PRK13152 hisH imidazole glycer 96.7 0.012 2.6E-07 51.6 9.5 48 278-326 37-89 (201)
203 PRK13142 hisH imidazole glycer 96.7 0.0078 1.7E-07 52.1 7.6 83 204-327 2-87 (192)
204 PRK06278 cobyrinic acid a,c-di 96.6 0.003 6.6E-08 62.4 5.6 44 85-133 36-81 (476)
205 PF01174 SNO: SNO glutamine am 96.6 0.001 2.2E-08 56.5 1.9 49 278-326 33-84 (188)
206 TIGR01368 CPSaseIIsmall carbam 96.6 0.0074 1.6E-07 57.5 7.7 86 9-133 174-259 (358)
207 CHL00197 carA carbamoyl-phosph 96.6 0.0079 1.7E-07 57.7 7.7 87 202-326 193-279 (382)
208 PRK09522 bifunctional glutamin 96.5 0.0082 1.8E-07 60.4 7.5 79 218-326 15-93 (531)
209 TIGR00313 cobQ cobyric acid sy 96.4 0.0071 1.5E-07 60.3 6.8 50 84-133 283-335 (475)
210 PRK12838 carbamoyl phosphate s 96.4 0.0063 1.4E-07 57.9 6.2 46 85-133 208-253 (354)
211 TIGR01368 CPSaseIIsmall carbam 96.4 0.0079 1.7E-07 57.3 6.8 74 219-326 186-259 (358)
212 PRK12838 carbamoyl phosphate s 96.4 0.0087 1.9E-07 57.0 6.9 75 218-326 179-253 (354)
213 PRK14004 hisH imidazole glycer 96.3 0.0049 1.1E-07 54.4 4.3 48 278-326 37-88 (210)
214 COG0512 PabA Anthranilate/para 96.2 0.025 5.5E-07 48.3 7.6 88 10-133 3-90 (191)
215 cd01746 GATase1_CTP_Synthase T 96.1 0.012 2.5E-07 52.9 6.0 48 276-326 53-100 (235)
216 PF09825 BPL_N: Biotin-protein 96.1 0.026 5.6E-07 53.8 8.3 93 9-132 1-97 (367)
217 PLN02347 GMP synthetase 96.1 0.032 6.9E-07 56.3 9.3 90 203-326 12-102 (536)
218 PLN02347 GMP synthetase 96.1 0.025 5.4E-07 57.0 8.5 91 9-133 11-102 (536)
219 PF09825 BPL_N: Biotin-protein 96.0 0.033 7.2E-07 53.1 8.7 93 202-325 1-97 (367)
220 cd01746 GATase1_CTP_Synthase T 95.8 0.014 3.1E-07 52.4 5.0 47 84-133 54-100 (235)
221 TIGR00313 cobQ cobyric acid sy 95.8 0.014 2.9E-07 58.3 5.2 51 276-326 282-335 (475)
222 PLN02771 carbamoyl-phosphate s 95.8 0.031 6.8E-07 53.9 7.5 76 217-326 251-326 (415)
223 PLN02771 carbamoyl-phosphate s 95.8 0.026 5.6E-07 54.5 6.8 76 24-133 251-326 (415)
224 PRK00074 guaA GMP synthase; Re 95.7 0.039 8.5E-07 55.5 8.3 88 9-133 4-91 (511)
225 PRK09522 bifunctional glutamin 95.7 0.028 6E-07 56.7 7.0 90 10-133 3-93 (531)
226 TIGR00337 PyrG CTP synthase. C 95.6 0.064 1.4E-06 53.4 9.0 48 276-326 341-388 (525)
227 PRK14607 bifunctional glutamin 95.6 0.03 6.6E-07 56.7 7.0 47 277-326 43-89 (534)
228 cd03129 GAT1_Peptidase_E_like 95.5 0.12 2.7E-06 45.5 9.9 115 181-326 13-130 (210)
229 PRK00074 guaA GMP synthase; Re 95.4 0.056 1.2E-06 54.4 7.9 88 202-326 4-91 (511)
230 PRK11366 puuD gamma-glutamyl-g 95.3 0.026 5.6E-07 51.4 4.8 49 278-326 61-123 (254)
231 COG3442 Predicted glutamine am 95.3 0.05 1.1E-06 47.1 6.1 50 84-133 51-103 (250)
232 PRK11366 puuD gamma-glutamyl-g 95.2 0.022 4.8E-07 51.9 4.1 49 85-133 61-123 (254)
233 PF13587 DJ-1_PfpI_N: N-termin 95.2 0.023 5E-07 35.1 2.8 27 9-35 1-38 (38)
234 PLN02327 CTP synthase 95.1 0.12 2.6E-06 51.7 9.2 48 276-326 360-407 (557)
235 PRK06186 hypothetical protein; 95.1 0.034 7.4E-07 49.4 4.8 48 276-326 51-100 (229)
236 PRK05380 pyrG CTP synthetase; 95.0 0.039 8.4E-07 54.9 5.4 48 276-326 341-388 (533)
237 PRK06278 cobyrinic acid a,c-di 95.0 0.023 5.1E-07 56.2 3.8 47 277-326 35-81 (476)
238 PRK06186 hypothetical protein; 94.9 0.037 8E-07 49.2 4.5 48 83-133 51-100 (229)
239 PRK14607 bifunctional glutamin 94.7 0.061 1.3E-06 54.5 6.1 87 13-133 2-89 (534)
240 PRK05380 pyrG CTP synthetase; 94.7 0.048 1E-06 54.3 5.1 46 84-132 342-387 (533)
241 PF03575 Peptidase_S51: Peptid 94.7 0.016 3.5E-07 48.5 1.6 80 26-133 4-85 (154)
242 COG0505 CarA Carbamoylphosphat 94.6 0.099 2.2E-06 48.9 6.5 75 219-326 192-266 (368)
243 TIGR01823 PabB-fungal aminodeo 94.5 0.21 4.5E-06 52.6 9.6 47 277-326 52-102 (742)
244 cd03145 GAT1_cyanophycinase Ty 94.5 0.37 8E-06 42.8 9.9 118 180-326 12-133 (217)
245 cd03145 GAT1_cyanophycinase Ty 94.5 0.18 4E-06 44.7 7.9 50 84-133 82-133 (217)
246 COG1492 CobQ Cobyric acid synt 94.3 0.14 3E-06 50.2 7.1 49 85-133 290-341 (486)
247 COG3442 Predicted glutamine am 94.2 0.05 1.1E-06 47.1 3.6 50 277-326 51-103 (250)
248 cd03129 GAT1_Peptidase_E_like 94.2 0.13 2.9E-06 45.3 6.5 50 84-133 79-130 (210)
249 KOG1907 Phosphoribosylformylgl 94.1 0.16 3.4E-06 52.7 7.3 106 9-147 1059-1176(1320)
250 PRK05368 homoserine O-succinyl 94.0 0.25 5.3E-06 46.0 8.0 110 8-133 35-151 (302)
251 COG0505 CarA Carbamoylphosphat 94.0 0.13 2.9E-06 48.0 6.1 55 77-133 212-266 (368)
252 COG4635 HemG Flavodoxin [Energ 93.7 0.22 4.8E-06 41.1 6.1 85 10-128 2-90 (175)
253 TIGR02069 cyanophycinase cyano 93.6 0.19 4.2E-06 45.6 6.4 101 9-134 29-133 (250)
254 KOG3210 Imidazoleglycerol-phos 93.6 0.062 1.3E-06 44.4 2.8 51 276-326 54-107 (226)
255 COG0504 PyrG CTP synthase (UTP 93.5 0.66 1.4E-05 45.3 10.1 43 279-324 344-386 (533)
256 PLN02889 oxo-acid-lyase/anthra 93.4 0.29 6.3E-06 52.2 8.2 48 277-326 130-178 (918)
257 TIGR01823 PabB-fungal aminodeo 93.2 0.36 7.8E-06 50.8 8.6 47 84-133 52-102 (742)
258 COG2071 Predicted glutamine am 93.1 0.17 3.7E-06 44.8 5.0 50 277-326 59-123 (243)
259 KOG3179 Predicted glutamine sy 93.0 0.42 9E-06 41.1 7.0 49 83-133 57-109 (245)
260 COG2071 Predicted glutamine am 93.0 0.18 4E-06 44.6 5.1 50 84-133 59-123 (243)
261 PF03575 Peptidase_S51: Peptid 92.8 0.053 1.1E-06 45.3 1.5 81 219-327 4-86 (154)
262 PLN02327 CTP synthase 92.8 0.17 3.7E-06 50.6 5.1 47 83-132 360-406 (557)
263 COG3340 PepE Peptidase E [Amin 92.6 0.48 1E-05 41.2 6.9 125 175-327 6-135 (224)
264 TIGR00337 PyrG CTP synthase. C 92.5 0.18 4E-06 50.2 4.9 46 84-132 342-387 (525)
265 cd01747 GATase1_Glutamyl_Hydro 92.4 0.24 5.3E-06 45.6 5.4 50 277-326 53-108 (273)
266 PLN02889 oxo-acid-lyase/anthra 92.3 0.34 7.4E-06 51.7 6.9 88 13-133 84-178 (918)
267 cd01747 GATase1_Glutamyl_Hydro 92.1 0.21 4.6E-06 46.0 4.6 50 84-133 53-108 (273)
268 TIGR02069 cyanophycinase cyano 92.1 0.46 1E-05 43.1 6.7 113 185-326 16-132 (250)
269 PRK05368 homoserine O-succinyl 92.0 0.3 6.4E-06 45.4 5.4 111 200-326 34-151 (302)
270 KOG3179 Predicted glutamine sy 91.5 0.25 5.5E-06 42.4 3.9 52 275-326 56-109 (245)
271 COG3340 PepE Peptidase E [Amin 91.4 0.35 7.6E-06 42.1 4.8 50 85-134 84-135 (224)
272 KOG0370 Multifunctional pyrimi 90.4 0.64 1.4E-05 48.8 6.3 47 278-326 210-256 (1435)
273 COG0504 PyrG CTP synthase (UTP 90.0 0.55 1.2E-05 45.9 5.2 43 86-131 344-386 (533)
274 KOG0370 Multifunctional pyrimi 89.6 0.58 1.3E-05 49.1 5.3 48 84-133 209-256 (1435)
275 PF07722 Peptidase_C26: Peptid 88.6 0.31 6.8E-06 43.2 2.4 49 84-132 57-121 (217)
276 KOG0623 Glutamine amidotransfe 87.2 0.9 1.9E-05 42.1 4.4 49 278-326 39-90 (541)
277 PF07722 Peptidase_C26: Peptid 87.2 0.57 1.2E-05 41.6 3.1 49 278-326 58-122 (217)
278 COG4285 Uncharacterized conser 86.5 3.8 8.2E-05 35.8 7.5 89 9-128 1-93 (253)
279 KOG0623 Glutamine amidotransfe 85.8 1.1 2.5E-05 41.5 4.3 77 20-132 10-89 (541)
280 cd03131 GATase1_HTS Type 1 glu 85.3 0.74 1.6E-05 39.2 2.8 57 269-326 53-114 (175)
281 cd03131 GATase1_HTS Type 1 glu 84.7 0.71 1.5E-05 39.4 2.4 55 77-132 54-113 (175)
282 PF13587 DJ-1_PfpI_N: N-termin 84.0 1.1 2.4E-05 27.6 2.4 18 211-228 21-38 (38)
283 KOG2387 CTP synthase (UTP-ammo 84.0 2.1 4.6E-05 41.3 5.3 44 278-324 363-406 (585)
284 COG4285 Uncharacterized conser 83.4 5.9 0.00013 34.6 7.3 90 202-322 1-94 (253)
285 KOG2387 CTP synthase (UTP-ammo 82.6 2.1 4.7E-05 41.2 4.8 44 85-131 363-406 (585)
286 PF08532 Glyco_hydro_42M: Beta 82.5 4.3 9.3E-05 35.6 6.6 60 23-123 31-90 (207)
287 PRK02645 ppnK inorganic polyph 82.2 9.4 0.0002 35.8 9.0 87 8-127 3-92 (305)
288 COG4635 HemG Flavodoxin [Energ 81.9 5.8 0.00013 33.0 6.4 46 274-321 43-90 (175)
289 PRK11104 hemG protoporphyrinog 80.7 10 0.00022 32.4 8.0 42 83-126 44-87 (177)
290 cd03143 A4_beta-galactosidase_ 80.5 10 0.00022 31.3 7.8 61 22-123 26-86 (154)
291 KOG1907 Phosphoribosylformylgl 80.4 7.1 0.00015 41.2 7.8 97 201-329 1058-1166(1320)
292 PF09822 ABC_transp_aux: ABC-t 80.3 24 0.00052 32.3 11.0 110 8-159 146-265 (271)
293 COG1492 CobQ Cobyric acid synt 79.9 3.9 8.4E-05 40.4 5.7 50 277-326 289-341 (486)
294 PRK02155 ppnK NAD(+)/NADH kina 77.0 18 0.00038 33.7 9.0 92 8-128 5-98 (291)
295 PRK05568 flavodoxin; Provision 75.4 21 0.00045 28.9 8.2 85 9-125 2-90 (142)
296 PRK04539 ppnK inorganic polyph 75.2 28 0.0006 32.5 9.8 97 7-127 4-102 (296)
297 COG4242 CphB Cyanophycinase an 74.9 12 0.00026 33.5 6.7 49 277-325 105-155 (293)
298 KOG0026 Anthranilate synthase, 74.3 17 0.00036 30.4 7.0 102 206-340 21-132 (223)
299 PF03698 UPF0180: Uncharacteri 74.2 11 0.00025 27.4 5.4 21 22-42 8-28 (80)
300 PF08532 Glyco_hydro_42M: Beta 73.8 11 0.00023 33.1 6.4 59 216-315 31-89 (207)
301 PRK01231 ppnK inorganic polyph 73.0 25 0.00055 32.7 8.9 90 9-127 5-96 (295)
302 KOG0026 Anthranilate synthase, 71.7 18 0.00039 30.2 6.6 67 77-146 55-131 (223)
303 cd03143 A4_beta-galactosidase_ 71.4 24 0.00052 29.0 7.8 61 215-316 26-86 (154)
304 PRK03708 ppnK inorganic polyph 71.3 28 0.0006 32.1 8.7 89 9-128 1-91 (277)
305 COG4242 CphB Cyanophycinase an 71.3 8.9 0.00019 34.3 5.1 52 84-135 105-158 (293)
306 KOG1224 Para-aminobenzoate (PA 70.1 8.6 0.00019 38.2 5.2 47 277-326 63-111 (767)
307 PRK03378 ppnK inorganic polyph 69.3 41 0.00088 31.3 9.4 91 8-127 5-97 (292)
308 PRK02645 ppnK inorganic polyph 68.6 26 0.00056 32.8 8.1 88 200-320 2-92 (305)
309 PRK05569 flavodoxin; Provision 67.9 35 0.00077 27.5 7.9 85 9-126 2-92 (141)
310 PRK03094 hypothetical protein; 66.7 22 0.00047 26.0 5.4 20 22-41 8-27 (80)
311 PRK03372 ppnK inorganic polyph 66.6 46 0.001 31.2 9.2 101 8-128 5-107 (306)
312 PF06283 ThuA: Trehalose utili 64.9 29 0.00064 30.5 7.4 42 83-127 50-91 (217)
313 PLN02204 diacylglycerol kinase 63.4 20 0.00042 36.8 6.4 85 183-290 142-230 (601)
314 PF09822 ABC_transp_aux: ABC-t 63.1 1.2E+02 0.0026 27.6 11.6 125 184-354 133-267 (271)
315 PRK06756 flavodoxin; Provision 62.2 59 0.0013 26.5 8.3 86 9-127 2-93 (148)
316 PLN02204 diacylglycerol kinase 59.8 11 0.00023 38.6 3.9 70 7-98 158-231 (601)
317 PRK05568 flavodoxin; Provision 59.5 71 0.0015 25.7 8.2 42 277-318 47-90 (142)
318 COG0062 Uncharacterized conser 58.6 55 0.0012 28.6 7.6 113 8-135 49-169 (203)
319 TIGR01754 flav_RNR ribonucleot 58.4 83 0.0018 25.4 8.4 42 83-126 48-90 (140)
320 KOG4435 Predicted lipid kinase 57.1 5.2 0.00011 38.2 1.1 39 7-45 59-102 (535)
321 PRK02649 ppnK inorganic polyph 56.5 84 0.0018 29.4 9.0 101 8-128 1-103 (305)
322 PRK03708 ppnK inorganic polyph 56.2 54 0.0012 30.2 7.6 88 202-320 1-90 (277)
323 COG1058 CinA Predicted nucleot 54.2 23 0.0005 32.1 4.7 76 211-310 17-107 (255)
324 PRK09271 flavodoxin; Provision 54.2 1.3E+02 0.0027 25.0 9.1 87 10-126 2-94 (160)
325 PRK13054 lipid kinase; Reviewe 54.0 16 0.00035 34.0 3.9 36 8-43 3-39 (300)
326 PRK11914 diacylglycerol kinase 52.0 27 0.00059 32.6 5.1 87 8-127 8-98 (306)
327 PRK13055 putative lipid kinase 51.8 21 0.00045 33.9 4.3 94 9-132 3-101 (334)
328 PRK11104 hemG protoporphyrinog 50.7 97 0.0021 26.3 7.9 42 276-319 44-87 (177)
329 PRK01911 ppnK inorganic polyph 50.5 1E+02 0.0023 28.6 8.6 36 85-128 64-99 (292)
330 PRK06455 riboflavin synthase; 50.5 34 0.00075 28.4 4.7 92 8-123 1-97 (155)
331 PRK03767 NAD(P)H:quinone oxido 50.2 59 0.0013 28.2 6.6 101 9-126 2-115 (200)
332 PF09897 DUF2124: Uncharacteri 49.5 29 0.00062 28.5 4.0 47 278-327 80-127 (147)
333 COG4126 Hydantoin racemase [Am 49.2 1.9E+02 0.0041 25.6 9.5 87 83-185 67-160 (230)
334 PF09897 DUF2124: Uncharacteri 48.4 33 0.00072 28.1 4.3 108 8-134 19-127 (147)
335 cd02070 corrinoid_protein_B12- 48.3 50 0.0011 28.7 5.9 37 201-237 82-119 (201)
336 TIGR02336 1,3-beta-galactosyl- 48.2 1.3E+02 0.0029 31.2 9.3 76 213-319 466-545 (719)
337 TIGR01001 metA homoserine O-su 47.7 30 0.00064 32.1 4.4 106 8-129 35-147 (300)
338 KOG1224 Para-aminobenzoate (PA 47.5 33 0.00072 34.3 4.9 45 84-131 63-109 (767)
339 PRK05569 flavodoxin; Provision 46.4 1.1E+02 0.0025 24.4 7.4 43 277-319 47-92 (141)
340 PF12682 Flavodoxin_4: Flavodo 46.3 9.9 0.00021 31.7 1.0 42 82-125 70-111 (156)
341 PRK14077 pnk inorganic polypho 45.6 1.2E+02 0.0027 28.0 8.2 89 8-128 10-99 (287)
342 COG0062 Uncharacterized conser 45.5 2.1E+02 0.0046 25.0 10.0 118 201-327 49-168 (203)
343 COG0452 Dfp Phosphopantothenoy 45.1 2.5E+02 0.0054 27.4 10.6 40 8-47 4-43 (392)
344 TIGR02336 1,3-beta-galactosyl- 45.1 60 0.0013 33.6 6.4 76 21-127 467-546 (719)
345 PF12682 Flavodoxin_4: Flavodo 43.7 9.2 0.0002 31.9 0.5 41 275-319 70-112 (156)
346 cd01915 CODH Carbon monoxide d 43.6 3.6E+02 0.0077 28.0 11.7 50 280-330 427-476 (613)
347 PRK06703 flavodoxin; Provision 41.9 84 0.0018 25.7 6.0 36 9-44 2-39 (151)
348 PRK13337 putative lipid kinase 41.0 29 0.00062 32.4 3.4 92 9-133 2-100 (304)
349 PRK09271 flavodoxin; Provision 40.6 1.6E+02 0.0034 24.4 7.5 43 277-319 50-94 (160)
350 PF13380 CoA_binding_2: CoA bi 40.5 1.8E+02 0.0038 22.7 8.6 83 9-121 1-83 (116)
351 COG1058 CinA Predicted nucleot 40.4 2.9E+02 0.0062 25.2 12.8 182 9-236 2-212 (255)
352 TIGR00147 lipid kinase, YegS/R 39.8 33 0.00073 31.7 3.7 37 8-44 1-41 (293)
353 PF02310 B12-binding: B12 bind 39.0 23 0.00049 27.6 2.0 35 10-44 2-37 (121)
354 PRK11914 diacylglycerol kinase 38.8 67 0.0015 29.9 5.5 37 200-236 7-47 (306)
355 KOG1622 GMP synthase [Nucleoti 38.6 27 0.00059 34.1 2.8 50 270-326 51-104 (552)
356 PRK14076 pnk inorganic polypho 38.3 2E+02 0.0044 29.6 9.2 107 185-320 274-382 (569)
357 KOG1622 GMP synthase [Nucleoti 38.1 22 0.00048 34.7 2.1 48 78-132 52-103 (552)
358 cd03142 GATase1_ThuA Type 1 gl 38.0 1.5E+02 0.0033 26.1 7.3 73 218-320 26-98 (215)
359 PRK04761 ppnK inorganic polyph 37.8 57 0.0012 29.5 4.6 39 81-127 21-59 (246)
360 PRK10310 PTS system galactitol 37.7 59 0.0013 24.4 4.1 35 9-43 3-39 (94)
361 PF09508 Lact_bio_phlase: Lact 37.5 2E+02 0.0043 29.9 8.6 94 194-318 427-541 (716)
362 PLN02958 diacylglycerol kinase 37.4 53 0.0012 33.0 4.8 67 7-98 110-181 (481)
363 PRK02649 ppnK inorganic polyph 37.3 1.9E+02 0.0041 27.1 8.1 35 278-320 68-102 (305)
364 PRK13054 lipid kinase; Reviewe 36.9 54 0.0012 30.5 4.5 12 279-290 85-96 (300)
365 PF02601 Exonuc_VII_L: Exonucl 36.8 39 0.00084 31.8 3.6 57 85-146 75-136 (319)
366 PRK13055 putative lipid kinase 36.7 64 0.0014 30.6 5.1 35 201-235 2-40 (334)
367 PF09508 Lact_bio_phlase: Lact 36.5 68 0.0015 33.1 5.2 91 8-129 435-545 (716)
368 COG2871 NqrF Na+-transporting 36.2 88 0.0019 28.9 5.4 89 229-325 228-318 (410)
369 PF12641 Flavodoxin_3: Flavodo 36.2 51 0.0011 27.6 3.8 39 83-125 37-75 (160)
370 cd02071 MM_CoA_mut_B12_BD meth 36.1 68 0.0015 25.3 4.4 28 210-237 9-36 (122)
371 PF11760 CbiG_N: Cobalamin syn 35.4 81 0.0018 23.3 4.3 70 300-390 2-77 (84)
372 PRK13059 putative lipid kinase 35.3 44 0.00096 31.0 3.7 36 9-44 2-41 (295)
373 cd05014 SIS_Kpsf KpsF-like pro 35.2 81 0.0018 24.7 4.8 37 278-319 47-83 (128)
374 TIGR02370 pyl_corrinoid methyl 35.0 1.2E+02 0.0025 26.3 6.1 78 202-310 85-163 (197)
375 PRK04761 ppnK inorganic polyph 34.9 50 0.0011 29.9 3.8 40 273-320 20-59 (246)
376 cd01481 vWA_collagen_alpha3-VI 34.9 83 0.0018 26.3 5.0 36 9-44 107-142 (165)
377 PF13380 CoA_binding_2: CoA bi 34.8 2.2E+02 0.0048 22.2 10.3 72 218-319 17-88 (116)
378 PRK02155 ppnK NAD(+)/NADH kina 34.7 2.1E+02 0.0045 26.6 8.0 35 278-320 63-97 (291)
379 PF12724 Flavodoxin_5: Flavodo 34.7 54 0.0012 26.6 3.7 44 82-127 40-85 (143)
380 TIGR02370 pyl_corrinoid methyl 34.3 1E+02 0.0022 26.7 5.6 36 9-44 85-121 (197)
381 PRK06411 NADH dehydrogenase su 34.3 62 0.0013 27.8 4.0 40 275-318 71-110 (183)
382 cd02070 corrinoid_protein_B12- 34.1 60 0.0013 28.2 4.1 37 8-44 82-119 (201)
383 PRK14817 NADH dehydrogenase su 34.0 64 0.0014 27.6 4.0 40 275-318 72-111 (181)
384 PF04204 HTS: Homoserine O-suc 34.0 37 0.0008 31.6 2.8 57 268-324 88-148 (298)
385 PRK01231 ppnK inorganic polyph 33.9 2E+02 0.0043 26.8 7.7 35 278-320 62-96 (295)
386 cd03142 GATase1_ThuA Type 1 gl 33.9 2.1E+02 0.0047 25.2 7.5 72 26-127 27-98 (215)
387 PF10034 Dpy19: Q-cell neurobl 33.8 15 0.00032 38.1 0.3 46 294-342 503-548 (642)
388 PF12724 Flavodoxin_5: Flavodo 33.2 58 0.0013 26.4 3.7 43 275-319 40-84 (143)
389 PRK06934 flavodoxin; Provision 33.1 33 0.00071 30.5 2.3 41 275-319 126-168 (221)
390 PF12641 Flavodoxin_3: Flavodo 32.7 85 0.0018 26.3 4.6 40 276-319 37-76 (160)
391 TIGR01957 nuoB_fam NADH-quinon 32.2 88 0.0019 25.7 4.5 36 275-317 54-92 (145)
392 PRK12361 hypothetical protein; 32.1 4.6E+02 0.0099 26.8 10.7 23 104-126 162-184 (547)
393 PF01058 Oxidored_q6: NADH ubi 32.0 42 0.0009 27.0 2.6 40 277-320 44-83 (131)
394 COG5426 Uncharacterized membra 31.9 97 0.0021 26.7 4.7 76 23-124 33-117 (254)
395 PF01058 Oxidored_q6: NADH ubi 31.9 67 0.0014 25.8 3.7 41 84-128 44-84 (131)
396 PRK06242 flavodoxin; Provision 31.3 65 0.0014 26.2 3.7 44 83-128 41-85 (150)
397 PRK02261 methylaspartate mutas 30.8 1.1E+02 0.0024 24.8 4.9 37 8-44 3-40 (137)
398 PRK14076 pnk inorganic polypho 30.7 2.7E+02 0.0059 28.7 8.7 92 7-128 289-383 (569)
399 PRK01372 ddl D-alanine--D-alan 30.4 1.4E+02 0.003 27.6 6.2 36 9-44 5-45 (304)
400 PRK06455 riboflavin synthase; 30.3 1.2E+02 0.0027 25.1 5.0 92 201-316 1-97 (155)
401 PRK10499 PTS system N,N'-diace 30.3 1.5E+02 0.0033 22.8 5.3 33 8-40 3-36 (106)
402 PRK03378 ppnK inorganic polyph 30.3 2.9E+02 0.0063 25.7 8.1 35 278-320 63-97 (292)
403 PF01975 SurE: Survival protei 29.7 76 0.0016 27.6 3.9 38 9-46 1-38 (196)
404 PF02310 B12-binding: B12 bind 29.6 43 0.00092 26.0 2.2 29 209-237 9-37 (121)
405 PF09558 DUF2375: Protein of u 29.3 41 0.0009 23.4 1.7 17 112-128 41-57 (71)
406 TIGR00147 lipid kinase, YegS/R 29.1 1.8E+02 0.004 26.7 6.8 35 202-236 2-40 (293)
407 cd06305 PBP1_methylthioribose_ 29.0 78 0.0017 28.3 4.2 83 10-123 1-86 (273)
408 PF06953 ArsD: Arsenical resis 28.9 76 0.0016 25.3 3.5 41 337-382 58-98 (123)
409 PF03853 YjeF_N: YjeF-related 28.5 40 0.00088 28.4 2.0 36 8-43 25-60 (169)
410 PLN02929 NADH kinase 28.5 2.4E+02 0.0052 26.4 7.2 34 85-127 64-97 (301)
411 TIGR02922 conserved hypothetic 28.4 38 0.00082 23.2 1.4 16 113-128 40-55 (67)
412 COG1184 GCD2 Translation initi 28.4 1.7E+02 0.0036 27.3 6.1 84 8-125 143-229 (301)
413 PRK06242 flavodoxin; Provision 28.0 86 0.0019 25.4 3.9 44 276-321 41-85 (150)
414 PF02441 Flavoprotein: Flavopr 28.0 1.1E+02 0.0024 24.2 4.5 36 9-44 1-36 (129)
415 cd00587 HCP_like The HCP famil 28.0 4.7E+02 0.01 23.9 9.3 120 88-233 97-216 (258)
416 COG0041 PurE Phosphoribosylcar 27.7 1E+02 0.0022 25.5 4.0 39 9-47 3-43 (162)
417 cd01475 vWA_Matrilin VWA_Matri 27.4 1.3E+02 0.0027 26.6 5.1 36 9-44 109-144 (224)
418 cd07018 S49_SppA_67K_type Sign 27.2 2.2E+02 0.0048 25.1 6.6 48 278-326 46-98 (222)
419 TIGR01001 metA homoserine O-su 27.2 46 0.00099 30.9 2.2 110 200-325 34-150 (300)
420 cd02067 B12-binding B12 bindin 27.0 1.6E+02 0.0034 22.8 5.1 27 18-44 10-36 (119)
421 TIGR01753 flav_short flavodoxi 27.0 2.5E+02 0.0053 22.1 6.4 42 85-127 45-90 (140)
422 PRK14820 NADH dehydrogenase su 26.9 98 0.0021 26.5 4.0 40 275-318 70-109 (180)
423 PF01975 SurE: Survival protei 26.7 1.3E+02 0.0028 26.2 4.8 39 202-240 1-39 (196)
424 cd02067 B12-binding B12 bindin 26.6 1.9E+02 0.004 22.4 5.4 27 210-236 9-35 (119)
425 PF04204 HTS: Homoserine O-suc 26.5 62 0.0014 30.1 3.0 53 77-129 90-146 (298)
426 COG1105 FruK Fructose-1-phosph 26.5 1.6E+02 0.0035 27.6 5.7 48 276-325 127-174 (310)
427 COG4126 Hydantoin racemase [Am 26.5 1.2E+02 0.0026 26.8 4.5 51 272-335 63-113 (230)
428 PRK10355 xylF D-xylose transpo 26.4 1.2E+02 0.0027 28.4 5.2 87 7-124 24-113 (330)
429 cd01473 vWA_CTRP CTRP for CS 26.3 1.2E+02 0.0025 26.2 4.5 36 9-44 109-148 (192)
430 PF00885 DMRL_synthase: 6,7-di 26.2 73 0.0016 26.2 3.1 90 8-121 3-103 (144)
431 PRK09461 ansA cytoplasmic aspa 26.1 1.4E+02 0.0031 28.3 5.5 58 278-336 233-302 (335)
432 PRK07308 flavodoxin; Validated 26.0 2.8E+02 0.0061 22.3 6.6 41 84-126 47-91 (146)
433 PF03853 YjeF_N: YjeF-related 25.9 1.6E+02 0.0035 24.7 5.2 50 184-236 11-60 (169)
434 cd01482 vWA_collagen_alphaI-XI 25.6 1.5E+02 0.0033 24.4 5.0 37 8-44 103-139 (164)
435 TIGR03378 glycerol3P_GlpB glyc 25.6 6.5E+02 0.014 24.8 9.9 37 201-237 138-178 (419)
436 COG4090 Uncharacterized protei 25.3 1.5E+02 0.0033 23.8 4.5 48 277-327 84-132 (154)
437 PF06792 UPF0261: Uncharacteri 25.2 99 0.0021 30.1 4.2 38 8-45 1-38 (403)
438 PRK06249 2-dehydropantoate 2-r 25.2 2.6E+02 0.0056 26.1 7.0 101 8-127 5-109 (313)
439 PLN02929 NADH kinase 25.2 2.6E+02 0.0057 26.1 6.8 35 277-320 63-97 (301)
440 PF06283 ThuA: Trehalose utili 25.1 1.6E+02 0.0034 25.7 5.3 41 276-319 50-90 (217)
441 cd01472 vWA_collagen von Wille 25.0 1.5E+02 0.0033 24.3 5.0 36 9-44 104-139 (164)
442 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.8 1.5E+02 0.0033 23.0 4.7 37 278-319 46-82 (126)
443 PRK06934 flavodoxin; Provision 24.6 64 0.0014 28.6 2.6 42 82-125 126-167 (221)
444 COG1832 Predicted CoA-binding 24.1 4E+02 0.0086 21.7 8.2 82 200-311 15-98 (140)
445 COG1832 Predicted CoA-binding 24.1 4E+02 0.0087 21.7 8.0 82 8-117 16-97 (140)
446 PRK01185 ppnK inorganic polyph 24.0 4.3E+02 0.0094 24.2 8.0 33 85-128 52-84 (271)
447 COG2242 CobL Precorrin-6B meth 24.0 1.4E+02 0.0031 25.7 4.5 35 278-318 102-136 (187)
448 cd02071 MM_CoA_mut_B12_BD meth 24.0 1.2E+02 0.0025 23.9 3.8 26 19-44 11-36 (122)
449 PLN02935 Bifunctional NADH kin 23.9 4.9E+02 0.011 26.3 8.7 95 7-126 193-295 (508)
450 COG2871 NqrF Na+-transporting 23.8 2E+02 0.0043 26.7 5.4 85 36-128 228-314 (410)
451 PRK00286 xseA exodeoxyribonucl 23.8 1E+02 0.0022 30.4 4.2 57 86-147 193-254 (438)
452 cd05014 SIS_Kpsf KpsF-like pro 23.6 3.5E+02 0.0076 20.9 8.2 38 85-127 47-84 (128)
453 COG0061 nadF NAD kinase [Coenz 23.3 4.3E+02 0.0093 24.3 7.9 86 9-126 1-88 (281)
454 PRK00561 ppnK inorganic polyph 23.1 98 0.0021 28.2 3.5 36 277-320 32-67 (259)
455 COG1029 FwdB Formylmethanofura 23.1 3.1E+02 0.0066 26.4 6.7 55 178-237 201-255 (429)
456 COG0039 Mdh Malate/lactate deh 23.0 1.6E+02 0.0034 27.8 4.9 79 9-95 1-79 (313)
457 PLN02727 NAD kinase 22.8 3.8E+02 0.0083 29.3 8.1 36 85-128 743-778 (986)
458 PRK14817 NADH dehydrogenase su 22.7 1.5E+02 0.0032 25.4 4.2 40 82-125 72-111 (181)
459 COG4090 Uncharacterized protei 22.7 2.4E+02 0.0051 22.7 5.0 47 85-134 85-132 (154)
460 TIGR00237 xseA exodeoxyribonuc 22.6 1.4E+02 0.0031 29.5 4.9 111 8-146 129-248 (432)
461 PRK03501 ppnK inorganic polyph 22.5 4.4E+02 0.0095 24.1 7.7 35 85-127 39-75 (264)
462 KOG4435 Predicted lipid kinase 22.5 53 0.0011 31.7 1.7 38 200-237 59-101 (535)
463 PLN02958 diacylglycerol kinase 22.5 2.4E+02 0.0051 28.4 6.5 50 185-236 97-151 (481)
464 cd01473 vWA_CTRP CTRP for CS 22.4 4.6E+02 0.01 22.4 7.6 37 201-237 108-148 (192)
465 TIGR01755 flav_wrbA NAD(P)H:qu 22.4 3.3E+02 0.0071 23.5 6.6 42 84-127 67-115 (197)
466 TIGR01754 flav_RNR ribonucleot 22.4 1.2E+02 0.0026 24.4 3.7 42 276-319 48-90 (140)
467 PRK00061 ribH 6,7-dimethyl-8-r 22.3 1.4E+02 0.003 24.9 4.0 90 8-121 12-112 (154)
468 PF12500 TRSP: TRSP domain C t 22.3 4E+02 0.0086 22.2 6.7 39 8-47 57-95 (155)
469 cd08195 DHQS Dehydroquinate sy 22.2 1.5E+02 0.0033 28.1 4.9 113 8-144 24-137 (345)
470 cd06318 PBP1_ABC_sugar_binding 21.9 99 0.0021 27.8 3.5 84 10-124 1-87 (282)
471 COG1597 LCB5 Sphingosine kinas 21.8 1E+02 0.0022 28.8 3.5 87 8-127 2-93 (301)
472 PRK06719 precorrin-2 dehydroge 21.8 4.6E+02 0.01 21.6 8.8 34 7-45 12-46 (157)
473 TIGR02990 ectoine_eutA ectoine 21.8 5.9E+02 0.013 22.8 9.2 94 201-321 120-217 (239)
474 cd01481 vWA_collagen_alpha3-VI 21.5 4.7E+02 0.01 21.6 7.6 36 201-236 106-141 (165)
475 TIGR00521 coaBC_dfp phosphopan 21.4 7.6E+02 0.017 24.0 12.5 37 8-44 3-39 (390)
476 TIGR03702 lip_kinase_YegS lipi 21.3 83 0.0018 29.1 2.8 33 11-43 2-35 (293)
477 cd00885 cinA Competence-damage 21.3 1.4E+02 0.0031 25.1 4.0 34 278-311 58-106 (170)
478 PRK14814 NADH dehydrogenase su 21.2 1.4E+02 0.0029 25.8 3.8 40 275-318 70-109 (186)
479 PRK13932 stationary phase surv 21.1 3.1E+02 0.0068 25.0 6.3 37 9-46 6-42 (257)
480 PRK14075 pnk inorganic polypho 21.1 5.3E+02 0.012 23.3 8.0 32 85-127 41-72 (256)
481 cd02069 methionine_synthase_B1 20.8 4.5E+02 0.0097 23.1 7.2 37 201-237 88-125 (213)
482 PTZ00188 adrenodoxin reductase 20.8 1.8E+02 0.004 29.3 5.2 85 7-95 38-136 (506)
483 PRK00561 ppnK inorganic polyph 20.7 1.4E+02 0.0031 27.2 4.1 36 84-127 32-67 (259)
484 COG1184 GCD2 Translation initi 20.6 7E+02 0.015 23.3 8.8 112 167-319 116-230 (301)
485 PRK06411 NADH dehydrogenase su 20.4 1.7E+02 0.0037 25.1 4.2 41 82-126 71-111 (183)
486 COG3075 GlpB Anaerobic glycero 20.2 1.5E+02 0.0032 28.3 4.0 140 8-163 138-280 (421)
487 PRK13337 putative lipid kinase 20.1 1.7E+02 0.0036 27.3 4.6 14 278-291 83-96 (304)
488 PLN02251 pyrophosphate-depende 20.1 9.7E+02 0.021 24.7 10.3 125 87-236 99-225 (568)
No 1
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=100.00 E-value=8.2e-35 Score=246.32 Aligned_cols=240 Identities=42% Similarity=0.657 Sum_probs=195.3
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
++++.++..++.+.+|+..|.++|++.|..|+++++++.. .+.++.+.++.+|..+.|.-.+.||
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yD 69 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYD 69 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhcccccc
Confidence 4689999999999999999999999999999999998765 5778888889999988887778999
Q ss_pred EEEEcCC-CCcccccCCHHHHHHHHHHHhCCCeEEEEchhh-HHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237 88 GLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (392)
Q Consensus 88 ~iiipGG-~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~ 165 (392)
+|+|||| .|++.|.+.+.+.+.++++.+.+++|++||+|+ .+|+..|++.|+++|+|+..++.|.+-+..|++..
T Consensus 70 viilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~--- 146 (247)
T KOG2764|consen 70 VIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR--- 146 (247)
T ss_pred EEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC---
Confidence 9999999 688889999999999999999999999999999 67777788889999999999999998777777766
Q ss_pred eeeecCceEecCCCCChHHHHHHHHHHhcCCcCCC-CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCC
Q 016237 166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS-DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSC 244 (392)
Q Consensus 166 ~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~~-~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~ 244 (392)
+|.|||++||+|+..+.+|++.++++|.+++... -.+...+++.- +++..+..+..
T Consensus 147 -vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka~~v~~~l~l~~~~----------------------v~~~~~~~e~~ 203 (247)
T KOG2764|consen 147 -VVKDGNLITSRGPGTAFEFALKLVEQLGGKEKANEVKKPLSLLFLP----------------------VAPEKKAGEAC 203 (247)
T ss_pred -eEEeCcEEeccCCCchHHHHHHHHHHhcCchhhhhhhccceeeccc----------------------cCCCchhccee
Confidence 8999999999999999999999999999998553 22333333211 33333333333
Q ss_pred CCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCC
Q 016237 245 PTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGR 288 (392)
Q Consensus 245 ~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~ 288 (392)
...+++++..+....+.|........++|+..+.||+|++|||.
T Consensus 204 a~~~~~~~~~~v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 204 ATADHDLEGRQVPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred cceehhhhcCcceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence 33344444333444455666666667999888999999999984
No 2
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=100.00 E-value=5.5e-32 Score=231.48 Aligned_cols=165 Identities=42% Similarity=0.723 Sum_probs=151.7
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
||+|+++|||+..|+..|+++|+++|++++++|++++ .+.++.|.++.++.+++++++.+||+|
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D~v 64 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG----------------TTVGKHGYSVTVDATIDEVNPEEYDAL 64 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC----------------ceeccCCceeeccCChhhCCHHHCcEE
Confidence 6999999999999999999999999999999998876 477888999999999998877789999
Q ss_pred EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeee
Q 016237 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV 169 (392)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~ 169 (392)
+||||.+...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+.+.+. +|.
T Consensus 65 vv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~---~v~ 141 (166)
T TIGR01382 65 VIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEV---VVV 141 (166)
T ss_pred EECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCC---EEE
Confidence 99999875555678999999999999999999999999999999999999999999999999988778877443 899
Q ss_pred cCceEecCCCCChHHHHHHHHHHh
Q 016237 170 DGNIITGATYEGHPEFIRLFLKAL 193 (392)
Q Consensus 170 dg~iiT~~g~~s~~~~~~~~i~~l 193 (392)
|||+|||+|+.++.+|+..+++.|
T Consensus 142 dg~iiT~~~~~~~~~fa~~~~~~l 165 (166)
T TIGR01382 142 DGNLVTSRVPDDLPAFNREFLKLL 165 (166)
T ss_pred ECCEEEeCCcccHHHHHHHHHHHh
Confidence 999999999999999999999976
No 3
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=9.7e-32 Score=232.81 Aligned_cols=180 Identities=54% Similarity=0.985 Sum_probs=152.5
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
||+|+++||++..|+..|+++|+++|++|+++|+++++.++.........+.+.+.+..|..+.++.+++++++.+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 69999999999999999999999999999999999875322211111111222455567889999999999877789999
Q ss_pred EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeee
Q 016237 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV 169 (392)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~ 169 (392)
+||||+++..+..++.+.+||+++++++++|++||+|+++|+++|+|+||++|+||...+.+++.+..+.+.. ++.
T Consensus 81 iv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~----~v~ 156 (180)
T cd03169 81 VIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG----VVV 156 (180)
T ss_pred EEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeecc----EEE
Confidence 9999987655567889999999999999999999999999999999999999999999999998666655433 889
Q ss_pred cCceEecCCCCChHHHHHHHHHHh
Q 016237 170 DGNIITGATYEGHPEFIRLFLKAL 193 (392)
Q Consensus 170 dg~iiT~~g~~s~~~~~~~~i~~l 193 (392)
|||+|||+|+.+..+|+..+++.|
T Consensus 157 D~~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 157 DGNLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred ECCEEEecCCchHHHHHHHHHHhC
Confidence 999999999999999999999864
No 4
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=1.9e-31 Score=227.98 Aligned_cols=162 Identities=40% Similarity=0.691 Sum_probs=149.0
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC-CCCCCCCCccccCCCCcccccccccC-ccccCcCcCCCCCCCcc
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPSKYD 87 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~D 87 (392)
||+|+++|||+..|+..+.+.|+++||+++++|++ ++ +++++.|. ++.++..+++.++.+||
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------------~v~~~~g~~~i~~d~~~~~~~~~~~D 64 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG----------------EIQGKHGYDTVTVDLTIADVDADDYD 64 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc----------------ccccCcCceeecCCCChHHCCHHHCC
Confidence 69999999999999999999999999999999998 55 57888899 99999999988777899
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~ 167 (392)
+|+||||++...+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+.+.. +
T Consensus 65 ~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~ 140 (165)
T cd03134 65 ALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----V 140 (165)
T ss_pred EEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----E
Confidence 999999986655667899999999999999999999999999999999999999999999999998777776544 8
Q ss_pred eecCceEecCCCCChHHHHHHHHH
Q 016237 168 VVDGNIITGATYEGHPEFIRLFLK 191 (392)
Q Consensus 168 v~dg~iiT~~g~~s~~~~~~~~i~ 191 (392)
+.|||+|||+|+.++.+|+..+++
T Consensus 141 v~dg~iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 141 VVDGNLITSRNPDDLPAFNRAILK 164 (165)
T ss_pred EEECCEEEecCcchHHHHHHHHHh
Confidence 899999999999999999999886
No 5
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.97 E-value=2.4e-31 Score=226.90 Aligned_cols=162 Identities=36% Similarity=0.589 Sum_probs=144.0
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+|+++|||+..|+..++++|+.+||+++++|+++++ .+.++.|..+.++..+++.++.+||+|+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~li 65 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIV 65 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEE
Confidence 6899999999999999999999999999999999874 2345789999999999988777999999
Q ss_pred EcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeee
Q 016237 91 IPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV 169 (392)
Q Consensus 91 ipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~ 169 (392)
||||. ++..+.+++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+ .+..+.+. . +|.
T Consensus 66 ipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~-~---~v~ 139 (163)
T cd03135 66 IPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDE-P---VVV 139 (163)
T ss_pred ECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecC-C---EEE
Confidence 99998 55556789999999999999999999999999999999999999999998877655 34445544 3 899
Q ss_pred cCceEecCCCCChHHHHHHHHHHh
Q 016237 170 DGNIITGATYEGHPEFIRLFLKAL 193 (392)
Q Consensus 170 dg~iiT~~g~~s~~~~~~~~i~~l 193 (392)
|||++||+|+.++.|+++++++++
T Consensus 140 dg~l~T~~g~~s~~d~al~li~~l 163 (163)
T cd03135 140 DGNIITSRGPGTAFEFALKIVEAL 163 (163)
T ss_pred ECCEEEcCCcccHHHHHHHHHHhC
Confidence 999999999999999999999864
No 6
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.97 E-value=6.4e-31 Score=224.91 Aligned_cols=166 Identities=43% Similarity=0.706 Sum_probs=152.4
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
|+.++++++++..|+..++++|+++||+++++|+++++ +.++.|..+.++..+++.++.+||+|
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~----------------v~~~~g~~i~~~~~~~~~~~~~~D~v 64 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGT----------------TVGKHGYSVTVDATIDEVNPEEYDAL 64 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCc----------------eeccCCceeeccCChhhCCHHHCcEE
Confidence 58899999999999999999999999999999988765 66778888999989988877789999
Q ss_pred EEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEE
Q 016237 283 VVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFT 362 (392)
Q Consensus 283 iipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~ 362 (392)
+||||.+...+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.++..++++.+.+ .+|.
T Consensus 65 vv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v~ 141 (166)
T TIGR01382 65 VIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVV 141 (166)
T ss_pred EECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEEE
Confidence 9999987655677899999999999999999999999999999999999999999999999998899998744 5999
Q ss_pred cCCeEEccCCCChHHHHHHHHHHhc
Q 016237 363 DGNLVSGAAWPGHPEFISQLMALLG 387 (392)
Q Consensus 363 dg~lvT~~g~~~~~~~~~~li~~l~ 387 (392)
|||+|||+|+.+..+|+.++++.|.
T Consensus 142 dg~iiT~~~~~~~~~fa~~~~~~l~ 166 (166)
T TIGR01382 142 DGNLVTSRVPDDLPAFNREFLKLLG 166 (166)
T ss_pred ECCEEEeCCcccHHHHHHHHHHHhC
Confidence 9999999999999999999999874
No 7
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.97 E-value=7e-31 Score=224.01 Aligned_cols=162 Identities=31% Similarity=0.524 Sum_probs=147.0
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV 283 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi 283 (392)
+++++++++...|+..++++|+.+||+++++|+++++ ...++.|..+.++..+++.+..+||+|+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~li 65 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIV 65 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEE
Confidence 5789999999999999999999999999999999875 1234678889999999988778999999
Q ss_pred EcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEE
Q 016237 284 VPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFT 362 (392)
Q Consensus 284 ipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~ 362 (392)
||||. +...+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+ +++++.++ .+|.
T Consensus 66 ipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~----~~v~ 139 (163)
T cd03135 66 IPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDE----PVVV 139 (163)
T ss_pred ECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecC----CEEE
Confidence 99998 55557789999999999999999999999999999999999999999999988766 88998876 4999
Q ss_pred cCCeEEccCCCChHHHHHHHHHHh
Q 016237 363 DGNLVSGAAWPGHPEFISQLMALL 386 (392)
Q Consensus 363 dg~lvT~~g~~~~~~~~~~li~~l 386 (392)
||+++|++|+.++.+|++++|++|
T Consensus 140 dg~l~T~~g~~s~~d~al~li~~l 163 (163)
T cd03135 140 DGNIITSRGPGTAFEFALKIVEAL 163 (163)
T ss_pred ECCEEEcCCcccHHHHHHHHHHhC
Confidence 999999999999999999999975
No 8
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=99.97 E-value=8e-31 Score=227.16 Aligned_cols=168 Identities=30% Similarity=0.481 Sum_probs=146.9
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEE--ECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
||+|+++|||+..|+..|+++|+.+|+++++ +|++++. +++++.|.++.++.++++.+..+||
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~---------------~v~~~~g~~v~~~~~~~~~~~~~~D 65 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL---------------PVKGSRGVKILADASLEDVDLEEFD 65 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc---------------ceEcCCCCEEeCCCCHHHCCcccCC
Confidence 6999999999999999999999999987776 9988642 4788999999999999987667899
Q ss_pred EEEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237 88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA 166 (392)
Q Consensus 88 ~iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~ 166 (392)
+|+||||.. ...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+.+. .+.... .
T Consensus 66 ~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~~---~ 140 (179)
T TIGR01383 66 AIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVNE---A 140 (179)
T ss_pred EEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCCC---C
Confidence 999999964 4445678999999999999999999999999999999999999999999887765542 332233 3
Q ss_pred eeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237 167 CVVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (392)
Q Consensus 167 ~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~ 197 (392)
++.|||++||+|+.++.++++++++.+.++.
T Consensus 141 ~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~ 171 (179)
T TIGR01383 141 VVVDGNIITSRGPGTAIEFALALVELLCGKE 171 (179)
T ss_pred EEEeCCEEECCChhhHHHHHHHHHHHhcCHH
Confidence 8999999999999999999999999988765
No 9
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=4.9e-30 Score=222.11 Aligned_cols=180 Identities=61% Similarity=1.053 Sum_probs=151.3
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
|++++++++++..|+..|+++|+++|++++++|+++++.........+..+...+....|..+.++..+++....+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 68899999999999999999999999999999999874311111110111122233456778888988998777789999
Q ss_pred EEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEE
Q 016237 283 VVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFT 362 (392)
Q Consensus 283 iipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~ 362 (392)
+||||+++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++.+.++.++ .++.
T Consensus 81 iv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~----~~v~ 156 (180)
T cd03169 81 VIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDD----GVVV 156 (180)
T ss_pred EEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeec----cEEE
Confidence 999998766666789999999999999999999999999999999999999999999999998877777654 4899
Q ss_pred cCCeEEccCCCChHHHHHHHHHHh
Q 016237 363 DGNLVSGAAWPGHPEFISQLMALL 386 (392)
Q Consensus 363 dg~lvT~~g~~~~~~~~~~li~~l 386 (392)
|||+|||+|+.+..+|+.++++.|
T Consensus 157 D~~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 157 DGNLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred ECCEEEecCCchHHHHHHHHHHhC
Confidence 999999999999999999999875
No 10
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=99.97 E-value=5.2e-30 Score=222.07 Aligned_cols=167 Identities=28% Similarity=0.405 Sum_probs=146.6
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEE--EcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDA--VCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
|+.++++++++..|+..++++|+.+|+++++ +|++++. .++++.|..+.++..+++.+.++||
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~---------------~v~~~~g~~v~~~~~~~~~~~~~~D 65 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL---------------PVKGSRGVKILADASLEDVDLEEFD 65 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc---------------ceEcCCCCEEeCCCCHHHCCcccCC
Confidence 6889999999999999999999999977776 9988651 2678889999999889987777999
Q ss_pred EEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCce
Q 016237 281 ALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDR 359 (392)
Q Consensus 281 ~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~ 359 (392)
+|+||||.. ...+..++.+.+||+++++++++|+++|+|+++||++|||+||++|+||.+.+.+ +..++..+. .
T Consensus 66 ~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~--~~~~~~~~~---~ 140 (179)
T TIGR01383 66 AIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKL--LNGNYSVNE---A 140 (179)
T ss_pred EEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhc--cCCceeCCC---C
Confidence 999999874 4446778999999999999999999999999999999999999999999988765 444664344 5
Q ss_pred EEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237 360 CFTDGNLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 360 vv~dg~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
++.||+++||+|+.++.+|++++|+++.|+
T Consensus 141 ~v~dg~i~T~~g~~a~~d~~l~li~~~~g~ 170 (179)
T TIGR01383 141 VVVDGNIITSRGPGTAIEFALALVELLCGK 170 (179)
T ss_pred EEEeCCEEECCChhhHHHHHHHHHHHhcCH
Confidence 899999999999999999999999999875
No 11
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=4.3e-30 Score=224.13 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=151.3
Q ss_pred EEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (392)
|+|+++|||+..|+..+.++|+.+| |+++++|++++ +++++.|+++.+|..+++ .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~v~~d~~~~~--~ 62 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG----------------PVRSSSGLSLVADAGLDA--L 62 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC----------------ceeecCCcEEEcCcCccc--c
Confidence 6899999999999999999999988 99999999876 588899999999998884 3
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEEcCC
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPE 162 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~~~~ 162 (392)
.+||+|+||||.+......++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ +|...+..+
T Consensus 63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~ 142 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD 142 (187)
T ss_pred CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC
Confidence 4899999999987665678999999999999999999999999999999999999999999999999998 677766543
Q ss_pred CcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237 163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (392)
Q Consensus 163 ~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~ 197 (392)
. .+++|||++||+|+.++.|+++++++++.++.
T Consensus 143 ~--~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~ 175 (187)
T cd03137 143 V--LYVDDGNVWTSAGVTAGIDLCLHLVREDLGAA 175 (187)
T ss_pred C--EEEecCCEEEcccHHHHHHHHHHHHHHHhCHH
Confidence 2 38899999999999999999999999988776
No 12
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=1.1e-29 Score=216.97 Aligned_cols=162 Identities=35% Similarity=0.650 Sum_probs=148.4
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCC-CCCCCCCCCcccCCCCCccccCCCCC-cccccccccCCCCCCcC
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPK-KKAGDSCPTAVHDFEGDQTYSEKPGH-NFTLTANFESVDVSGYD 280 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~D 280 (392)
+++++++++++..|+..+.++|++++|+++++|++ +++ ++++.|. .+.++..+++....+||
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~----------------v~~~~g~~~i~~d~~~~~~~~~~~D 64 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGE----------------IQGKHGYDTVTVDLTIADVDADDYD 64 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcc----------------cccCcCceeecCCCChHHCCHHHCC
Confidence 58899999999999999999999999999999998 654 6777888 89999889887767899
Q ss_pred EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceE
Q 016237 281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC 360 (392)
Q Consensus 281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~v 360 (392)
+|+||||++...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.++..+.++.++. +
T Consensus 65 ~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~ 140 (165)
T cd03134 65 ALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----V 140 (165)
T ss_pred EEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----E
Confidence 999999987655678899999999999999999999999999999999999999999999999988788887654 8
Q ss_pred EEcCCeEEccCCCChHHHHHHHHH
Q 016237 361 FTDGNLVSGAAWPGHPEFISQLMA 384 (392)
Q Consensus 361 v~dg~lvT~~g~~~~~~~~~~li~ 384 (392)
+.|||+|||+|+.++.+|+..+++
T Consensus 141 v~dg~iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 141 VVDGNLITSRNPDDLPAFNRAILK 164 (165)
T ss_pred EEECCEEEecCcchHHHHHHHHHh
Confidence 999999999999999999999986
No 13
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=1.9e-29 Score=220.01 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=150.3
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV 276 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 276 (392)
+.++++++++..|+..+.|+|+.++ |+++++|+++++ ++++.|.++.+|..+++ .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~----------------v~~~~g~~v~~d~~~~~--~ 62 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGP----------------VRSSSGLSLVADAGLDA--L 62 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCc----------------eeecCCcEEEcCcCccc--c
Confidence 4689999999999999999999987 999999998775 77888999999988874 4
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCeeeCC
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASWLEP 354 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~~~~ 354 (392)
++||+|+||||.+......++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.++ +|++.+..+
T Consensus 63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~ 142 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD 142 (187)
T ss_pred CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC
Confidence 589999999998766577899999999999999999999999999999999999999999999998887 488888766
Q ss_pred CCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237 355 DPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 355 ~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
. .++.||+++||+|+.++.|+++++|+++.|+
T Consensus 143 ~---~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~ 174 (187)
T cd03137 143 V---LYVDDGNVWTSAGVTAGIDLCLHLVREDLGA 174 (187)
T ss_pred C---EEEecCCEEEcccHHHHHHHHHHHHHHHhCH
Confidence 5 5899999999999999999999999998875
No 14
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.96 E-value=1.3e-29 Score=220.63 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=148.3
Q ss_pred EEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (392)
|+|+++|||+..|+..++|+|+.+| |+++++|.+++ ++.++.|.++.++..+.+.
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~-- 62 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA----------------PVTSSNGLRVAPDAALEDA-- 62 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC----------------eeecCCCcEEeCCcccccc--
Confidence 6899999999999999999999876 89999999876 5888999999999988754
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEEcCC
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPE 162 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~~~~ 162 (392)
.+||+|+||||.+.. +..++.+++||++++++++.|+++|+|+++|+++|+|+||++|+||...+.+++ ++...+...
T Consensus 63 ~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~ 141 (185)
T cd03136 63 PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD 141 (185)
T ss_pred CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC
Confidence 489999999998765 678999999999999999999999999999999999999999999999999987 655444333
Q ss_pred CcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237 163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (392)
Q Consensus 163 ~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~ 197 (392)
.+|.|||++|++|+.+++++++++++++.++.
T Consensus 142 ---~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~ 173 (185)
T cd03136 142 ---LFEIDGDRLTCAGGTAALDLMLELIARDHGAA 173 (185)
T ss_pred ---eEEEcCCEEEeccHHHHHHHHHHHHHHHhCHH
Confidence 38899999999999999999999999988876
No 15
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=5.8e-30 Score=222.59 Aligned_cols=166 Identities=24% Similarity=0.311 Sum_probs=149.4
Q ss_pred EEEEecCCCCccchHHHHHHHHhCC-----CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
|+|+++|||+..|+..+.++|+.+| |+++++|++++ .++++.|.++.++.++.+.. +
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~~--~ 62 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG----------------PVSSRSGLTVLPDTSFADPP--D 62 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC----------------ceEeCCCCEEcCCcccccCC--C
Confidence 6899999999999999999999999 99999999876 58889999999999888644 8
Q ss_pred ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 165 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~ 165 (392)
||+|+||||.++..+..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+...+
T Consensus 63 ~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~--- 139 (183)
T cd03139 63 LDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDA--- 139 (183)
T ss_pred CCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCC---
Confidence 99999999987665678999999999999999999999999999999999999999999999999998433332222
Q ss_pred eeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237 166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (392)
Q Consensus 166 ~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~ 197 (392)
.++.|||++||+|+.++.++++++++++.++.
T Consensus 140 ~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~ 171 (183)
T cd03139 140 RWVVDGNIWTSGGVSAGIDMALALVARLFGEE 171 (183)
T ss_pred EEEecCCEEEcCcHHHHHHHHHHHHHHHhCHH
Confidence 48999999999999999999999999988776
No 16
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.96 E-value=2.2e-29 Score=224.24 Aligned_cols=175 Identities=23% Similarity=0.344 Sum_probs=140.8
Q ss_pred CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCC--CCc-ccc----cccccCccccCcCcCCCCCCCccEEE
Q 016237 18 YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS--TGH-QTY----SETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 18 g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~--~~~-~~~----~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|++..|+..|+++|+++|++|+++|+.+.+ ..+..++... ... ..+ ..+.+.++.++.++++++.++||+|+
T Consensus 21 G~~~~E~~~p~~~l~~aG~~VdiaS~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 21 GVFFSEALHPFNVFREAGFEVDFVSETGTF-GFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 788999999999999999999999998642 1111111100 000 011 23455678889999999999999999
Q ss_pred EcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-------cccCCeeEecCCCc---------------
Q 016237 91 IPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV--------------- 147 (392)
Q Consensus 91 ipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-------gll~g~~~T~~~~~--------------- 147 (392)
||||+++. .+.+++.++++|+++++++|+|++||||+++|+.+ ++++||++|+|++.
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~ 179 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN 179 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence 99999764 48999999999999999999999999999999987 89999999999865
Q ss_pred ----HHHHHHCCCeEEcCC--CcceeeecCceEecCCCCChHHHHHHHHHHh
Q 016237 148 ----KPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKAL 193 (392)
Q Consensus 148 ----~~~l~~~~~~~~~~~--~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l 193 (392)
++.+++.|+.|...+ .+..+|+|||+||++++.|+.++++.+++.|
T Consensus 180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 455666789988642 2234889999999999999999999999875
No 17
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=5.4e-29 Score=218.65 Aligned_cols=166 Identities=23% Similarity=0.276 Sum_probs=147.8
Q ss_pred EEEEecCCCCccchHHHHHHHHhC------------CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCc
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAF------------GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF 78 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~a------------g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (392)
|+|+++|||...++..++|+|+.+ +|+++++|.+++ ++.++.|.++.+|.++
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~----------------~v~s~~g~~i~~d~~~ 64 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG----------------PVLLAGGILILPDATL 64 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC----------------eeecCCCceecccccc
Confidence 689999999999999999999963 489999999876 5788899999999988
Q ss_pred CCCCCCCccEEEEcCCCCc-c--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-C
Q 016237 79 DEIDPSKYDGLVIPGGRAP-E--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-A 154 (392)
Q Consensus 79 ~~~~~~~~D~iiipGG~~~-~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~ 154 (392)
++. .+||+|+||||.+. . .+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++ +
T Consensus 65 ~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~ 142 (195)
T cd03138 65 ADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRF 142 (195)
T ss_pred ccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHC
Confidence 864 48999999998754 3 4678899999999999999999999999999999999999999999999999998 6
Q ss_pred CCeEEcC-CCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237 155 GASWIEP-ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (392)
Q Consensus 155 ~~~~~~~-~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~ 197 (392)
+...... . .++.|||++||+|+.+++++++++++.+.++.
T Consensus 143 p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~ 183 (195)
T cd03138 143 PKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGPE 183 (195)
T ss_pred CCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCHH
Confidence 6554433 3 48999999999999999999999999988776
No 18
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.96 E-value=7.5e-29 Score=215.87 Aligned_cols=163 Identities=18% Similarity=0.156 Sum_probs=146.9
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV 276 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 276 (392)
+.+++++++...++..++|+|+.++ |+++++|.++++ +.+..|..+.++..+.+.
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~~----------------v~~~~g~~i~~d~~~~~~-- 62 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGAP----------------VTSSNGLRVAPDAALEDA-- 62 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCCe----------------eecCCCcEEeCCcccccc--
Confidence 5789999999999999999999875 899999998765 677888899999888653
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCeeeCC
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASWLEP 354 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~~~~ 354 (392)
.+||+|+||||.+.. +..++.+++||++++++++.|+++|+|+++|+++|+|+||++|+||...+.++ +|++++.+.
T Consensus 63 ~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~ 141 (185)
T cd03136 63 PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD 141 (185)
T ss_pred CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC
Confidence 589999999998765 67899999999999999999999999999999999999999999999998887 578888544
Q ss_pred CCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237 355 DPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 355 ~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
.+|.||+++|++|+.++.||++++++++.|+
T Consensus 142 ----~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~ 172 (185)
T cd03136 142 ----LFEIDGDRLTCAGGTAALDLMLELIARDHGA 172 (185)
T ss_pred ----eEEEcCCEEEeccHHHHHHHHHHHHHHHhCH
Confidence 4899999999999999999999999999875
No 19
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=4.4e-29 Score=214.05 Aligned_cols=163 Identities=27% Similarity=0.432 Sum_probs=141.2
Q ss_pred EEEEecCCCCccchHHHHHHHHhC-CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
|+++++|+|++.|+..+++.|+++ +|++++++++++ ++.++.|+++.++.++++.+..+||+|
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~----------------~v~ss~g~~i~~~~~~~~~~~~~~D~l 64 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE----------------PVTSIGGLRVVPDYSLDDLPPEDYDLL 64 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC----------------eeEecCCeEEccccchhHCCHhHccEE
Confidence 689999999999999999999997 899999999886 588999999999999998765689999
Q ss_pred EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCC-cHHHHHH-C-CCeEEcCCCcce
Q 016237 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIA-A-GASWIEPETMAA 166 (392)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~-~~~~l~~-~-~~~~~~~~~~~~ 166 (392)
+||||+.... ..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||. ..+.++. + +..+...+.
T Consensus 65 ~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~--- 140 (170)
T cd03140 65 ILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQ--- 140 (170)
T ss_pred EEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCc---
Confidence 9999976443 4778999999999999999999999999999999999999999985 4555554 2 444443343
Q ss_pred eeecCceEecCCCCChHHHHHHHHHHhc
Q 016237 167 CVVDGNIITGATYEGHPEFIRLFLKALG 194 (392)
Q Consensus 167 ~v~dg~iiT~~g~~s~~~~~~~~i~~l~ 194 (392)
+++|||+|||+| .++.|+++++++.+.
T Consensus 141 ~v~dg~iiT~~g-~a~~d~al~~i~~l~ 167 (170)
T cd03140 141 AVSDGNLITANG-TAPVEFAAEILRALD 167 (170)
T ss_pred EEEcCCEEECCC-cCHHHHHHHHHHHcC
Confidence 899999999987 558999999999875
No 20
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=5e-29 Score=216.70 Aligned_cols=165 Identities=24% Similarity=0.273 Sum_probs=148.3
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcC-----CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALE-----CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG 278 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 278 (392)
+.++++++++..++..+.++|+.+| |+++++|+++++ ++++.|..+.++..+++. ++
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~----------------v~~~~g~~i~~d~~~~~~--~~ 62 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGP----------------VSSRSGLTVLPDTSFADP--PD 62 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCc----------------eEeCCCCEEcCCcccccC--CC
Confidence 4789999999999999999999999 999999998875 778889999999888764 48
Q ss_pred cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237 279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID 358 (392)
Q Consensus 279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~ 358 (392)
||+|+||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|+|+||++|+||...+.++..+.++..+.
T Consensus 63 ~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~--- 139 (183)
T cd03139 63 LDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDA--- 139 (183)
T ss_pred CCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCC---
Confidence 99999999987766788999999999999999999999999999999999999999999999999886555542223
Q ss_pred eEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237 359 RCFTDGNLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 359 ~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
.++.||+++||+|+.++.+|++++|+++.|+
T Consensus 140 ~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~ 170 (183)
T cd03139 140 RWVVDGNIWTSGGVSAGIDMALALVARLFGE 170 (183)
T ss_pred EEEecCCEEEcCcHHHHHHHHHHHHHHHhCH
Confidence 5899999999999999999999999998875
No 21
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.96 E-value=4.1e-29 Score=213.62 Aligned_cols=158 Identities=25% Similarity=0.351 Sum_probs=136.9
Q ss_pred EecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 14 LCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 14 ll~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
|++|||...|++.+.|+|+.+| |++++++++++ ++.++.|+++.++..+++ ..++
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~----------------~v~~s~g~~i~~~~~~~~--~~~~ 62 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG----------------PVTSSSGLRIQPDGSLDD--APDF 62 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC----------------EEEBTTSEEEEESEETCC--CSCC
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC----------------eeeecCCeEEEeccChhh--cccC
Confidence 6899999999999999999999 99999999886 588999999999999998 4589
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEEcCCCcc
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMA 165 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~~~~~~~ 165 (392)
|+|+||||........++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ ++...+..+.
T Consensus 63 D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~-- 140 (166)
T PF13278_consen 63 DILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ-- 140 (166)
T ss_dssp SEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS--
T ss_pred CEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC--
Confidence 9999999988444577899999999999999999999999999999999999999999999999998 6777655332
Q ss_pred eeeecCceEecCCCCChHHHHHHHHH
Q 016237 166 ACVVDGNIITGATYEGHPEFIRLFLK 191 (392)
Q Consensus 166 ~~v~dg~iiT~~g~~s~~~~~~~~i~ 191 (392)
.+|.|||++||+|..+++|+++++|+
T Consensus 141 ~~v~dg~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 141 LFVDDGNIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCCeEEecHHHHHHHHHHHHhC
Confidence 39999999999999999999999986
No 22
>PRK04155 chaperone protein HchA; Provisional
Probab=99.96 E-value=8.6e-29 Score=226.05 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=148.8
Q ss_pred CCEEEEEec--------------CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCc-ccccccccCcc
Q 016237 8 KRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNF 72 (392)
Q Consensus 8 ~~kI~ill~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ 72 (392)
.|||+|++. .|+++.|+..|+++|+++|++|+++|+++++...+.|++...... .......+.++
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l 128 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKF 128 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhc
Confidence 579999996 378889999999999999999999999887654455543211100 00011223344
Q ss_pred ccCcCcCCC----C--CCCccEEEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc------ccCCe
Q 016237 73 ALNATFDEI----D--PSKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGR 139 (392)
Q Consensus 73 ~~~~~~~~~----~--~~~~D~iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag------ll~g~ 139 (392)
..+..++++ . +++||+||||||+++. .+++++.++++|+++++++|+|++||||+++|..++ +++||
T Consensus 129 ~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~Gk 208 (287)
T PRK04155 129 KQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGY 208 (287)
T ss_pred cCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCCC
Confidence 544444433 3 6799999999999864 489999999999999999999999999999999998 99999
Q ss_pred eEecCCCc-------------------HHHHHHCCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCC
Q 016237 140 KCTAYPPV-------------------KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT 196 (392)
Q Consensus 140 ~~T~~~~~-------------------~~~l~~~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~ 196 (392)
++|+|+.. ++.|++.|+.+++.+....+|+||||||++|+.++.++++.+++.|...
T Consensus 209 kvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~ 284 (287)
T PRK04155 209 SICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA 284 (287)
T ss_pred EEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence 99998865 5567888999998643334999999999999999999999999887543
No 23
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.96 E-value=9e-29 Score=220.33 Aligned_cols=177 Identities=28% Similarity=0.463 Sum_probs=144.1
Q ss_pred CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCccc-c---cccccCccccCcCcCCCCCCCccEEEEc
Q 016237 17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT-Y---SETRGHNFALNATFDEIDPSKYDGLVIP 92 (392)
Q Consensus 17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~~~~~~~~~~~~~~~~~D~iiip 92 (392)
+|++..|+..|+++|+++|++|+++|+.+++...+.+++........ . ....+..+.++..++++++++||+|+||
T Consensus 18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ip 97 (221)
T cd03141 18 TGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIP 97 (221)
T ss_pred CccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEEC
Confidence 79999999999999999999999999987653333222221111100 0 1245667889999999998899999999
Q ss_pred CCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc------ccCCeeEecCCCcH---------------HH
Q 016237 93 GGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PV 150 (392)
Q Consensus 93 GG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag------ll~g~~~T~~~~~~---------------~~ 150 (392)
||+++. .+..++.+++||+++++++++|++||+|+++|+++| +|+||++|+||... +.
T Consensus 98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~ 177 (221)
T cd03141 98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDE 177 (221)
T ss_pred CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHH
Confidence 998754 377899999999999999999999999999999999 79999999998754 44
Q ss_pred HHHCCCeEEcCC-CcceeeecCceEecCCCCChHHHHHHHHHHh
Q 016237 151 LIAAGASWIEPE-TMAACVVDGNIITGATYEGHPEFIRLFLKAL 193 (392)
Q Consensus 151 l~~~~~~~~~~~-~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l 193 (392)
+++.|+.|.+.. .+..+|+|+|+||++|+.++.++++.+++.|
T Consensus 178 l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 178 LKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 777788888643 1234899999999999999999999999864
No 24
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=1.7e-28 Score=215.49 Aligned_cols=165 Identities=22% Similarity=0.207 Sum_probs=147.8
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhc------------CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccc
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQAL------------ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANF 271 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~------------~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~ 271 (392)
+.+++++++...+++.++|+|+.+ +|+++++|+++++ +.++.|..+.+|..+
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~~----------------v~s~~g~~i~~d~~~ 64 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGGP----------------VLLAGGILILPDATL 64 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCCe----------------eecCCCceecccccc
Confidence 578999999999999999999964 4899999998775 677889999999877
Q ss_pred cCCCCCCcCEEEEcCCCCh-h--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--H
Q 016237 272 ESVDVSGYDALVVPGGRAP-E--YLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--L 346 (392)
Q Consensus 272 ~~~~~~~~D~viipgg~~~-~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~ 346 (392)
++. ++||+|+||||.+. . .+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||.....++ +
T Consensus 65 ~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~ 142 (195)
T cd03138 65 ADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRF 142 (195)
T ss_pred ccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHC
Confidence 754 58999999998764 3 467899999999999999999999999999999999999999999999998887 5
Q ss_pred cCCeeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237 347 AGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 347 ~~~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
|++.+.++. .++.||+++|++|+.++.++++++|+++.|+
T Consensus 143 p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~ 182 (195)
T cd03138 143 PKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGP 182 (195)
T ss_pred CCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCH
Confidence 788888755 6999999999999999999999999998875
No 25
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.96 E-value=1.1e-28 Score=211.11 Aligned_cols=157 Identities=21% Similarity=0.330 Sum_probs=136.9
Q ss_pred EeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237 207 LCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY 279 (392)
Q Consensus 207 ll~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 279 (392)
++++++...+++.++|+|+.++ |+++++|+++++ +.++.|..+.++..+++ ..++
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~~----------------v~~s~g~~i~~~~~~~~--~~~~ 62 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGGP----------------VTSSSGLRIQPDGSLDD--APDF 62 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSCE----------------EEBTTSEEEEESEETCC--CSCC
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCCe----------------eeecCCeEEEeccChhh--cccC
Confidence 5799999999999999999998 999999998775 78889999999999988 4589
Q ss_pred CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCeeeCCCCC
Q 016237 280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASWLEPDPI 357 (392)
Q Consensus 280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~~~~~~~ 357 (392)
|+|+||||........++.+.+||++++++++.|+++|+|+++||++|||+||++|+||...+.++ +|..++..+.
T Consensus 63 D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~-- 140 (166)
T PF13278_consen 63 DILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ-- 140 (166)
T ss_dssp SEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS--
T ss_pred CEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC--
Confidence 999999998855567889999999999999999999999999999999999999999999999988 6778887555
Q ss_pred ceEEEcCCeEEccCCCChHHHHHHHHH
Q 016237 358 DRCFTDGNLVSGAAWPGHPEFISQLMA 384 (392)
Q Consensus 358 ~~vv~dg~lvT~~g~~~~~~~~~~li~ 384 (392)
.+|.||+++||+|..++.|+++++||
T Consensus 141 -~~v~dg~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 141 -LFVDDGNIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp -SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred -EEEECCCeEEecHHHHHHHHHHHHhC
Confidence 69999999999999999999999996
No 26
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.96 E-value=2.1e-28 Score=231.44 Aligned_cols=169 Identities=21% Similarity=0.294 Sum_probs=150.9
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE 80 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (392)
+++|+|+++|||+..|+..+.|+|+.++ |+|+++|.+++ +++++.|+++.+|..+++
T Consensus 9 ~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~----------------~v~ss~g~~i~~d~~~~~ 72 (322)
T PRK09393 9 NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG----------------PLRAAGGITVVADGGLEL 72 (322)
T ss_pred ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC----------------ceEeCCCcEEeCCCCccc
Confidence 5799999999999999999999997653 68999999876 588999999999999986
Q ss_pred CCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEE
Q 016237 81 IDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI 159 (392)
Q Consensus 81 ~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~ 159 (392)
. ++||+||||||.+... ..++.+.+||+++++++++|++||+|+++||++|+|+|+++|+||...+.+++ +|...+
T Consensus 73 ~--~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~ 149 (322)
T PRK09393 73 L--DRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRV 149 (322)
T ss_pred c--CCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEE
Confidence 4 4899999999976543 45899999999999999999999999999999999999999999999999987 787776
Q ss_pred cCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237 160 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 197 (392)
Q Consensus 160 ~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~ 197 (392)
..+. .+|.|||++||+|+.++.++++++++...+..
T Consensus 150 ~~~~--~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~ 185 (322)
T PRK09393 150 DPDV--LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSE 185 (322)
T ss_pred eCCc--eEEecCCEEecccHHHHHHHHHHHHHHHhCHH
Confidence 6543 48899999999999999999999999877655
No 27
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=1.9e-28 Score=210.07 Aligned_cols=163 Identities=25% Similarity=0.393 Sum_probs=140.5
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhc-CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQAL-ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~-~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
+++++++++++.|+..++++|+++ +|+++++++++++ +.++.|..+.++..+++.+..+||+|
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~----------------v~ss~g~~i~~~~~~~~~~~~~~D~l 64 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEP----------------VTSIGGLRVVPDYSLDDLPPEDYDLL 64 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCe----------------eEecCCeEEccccchhHCCHhHccEE
Confidence 478999999999999999999997 7999999998875 77889999999999998766789999
Q ss_pred EEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCch-hHHHHHH--cCCeeeCCCCCce
Q 016237 283 VVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPA-VKLNVLL--AGASWLEPDPIDR 359 (392)
Q Consensus 283 iipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~-~~~~~~~--~~~~~~~~~~~~~ 359 (392)
+||||..... ..++.+.+|||++++++++|+++|+|+++|+++|||+||++|+||. ..+.++. ++.....++ .
T Consensus 65 ~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~---~ 140 (170)
T cd03140 65 ILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP---Q 140 (170)
T ss_pred EEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---c
Confidence 9999976433 4789999999999999999999999999999999999999999986 4555543 344333334 5
Q ss_pred EEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237 360 CFTDGNLVSGAAWPGHPEFISQLMALLG 387 (392)
Q Consensus 360 vv~dg~lvT~~g~~~~~~~~~~li~~l~ 387 (392)
+|.|||+|||+| .+..||++++++++.
T Consensus 141 ~v~dg~iiT~~g-~a~~d~al~~i~~l~ 167 (170)
T cd03140 141 AVSDGNLITANG-TAPVEFAAEILRALD 167 (170)
T ss_pred EEEcCCEEECCC-cCHHHHHHHHHHHcC
Confidence 999999999987 558999999999986
No 28
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.96 E-value=1.9e-28 Score=218.46 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=144.1
Q ss_pred cCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCc-ccccccccCccccCcCcCCC------CCCCccE
Q 016237 16 GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNFALNATFDEI------DPSKYDG 88 (392)
Q Consensus 16 ~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~------~~~~~D~ 88 (392)
..||+..|+..|+++|+++|++|+++|+++++...+.++....... .......+.++..+.+++++ ++++||+
T Consensus 20 ~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDa 99 (232)
T cd03148 20 STGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAA 99 (232)
T ss_pred CCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceE
Confidence 5799999999999999999999999999886544444443211000 00011345567888888887 4579999
Q ss_pred EEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc------cCCeeEecCCCcHH------------
Q 016237 89 LVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP------------ 149 (392)
Q Consensus 89 iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl------l~g~~~T~~~~~~~------------ 149 (392)
||+|||++++ .+++++.++++++++++++|+|++||||+++|..+++ ++||++|+|++.++
T Consensus 100 v~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~ 179 (232)
T cd03148 100 VFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPG 179 (232)
T ss_pred EEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccC
Confidence 9999999865 4999999999999999999999999999999999988 99999999987644
Q ss_pred --------HHHHCCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHh
Q 016237 150 --------VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 193 (392)
Q Consensus 150 --------~l~~~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l 193 (392)
.|++.|+.|...+....+|+|||+||+++|.|+..++..+++.+
T Consensus 180 ~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 180 HLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred cccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 45667899987743345899999999999999999999999875
No 29
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.96 E-value=5.2e-28 Score=215.45 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=141.8
Q ss_pred CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccC-CCCC--ccc----cCCCCCcccccccccCCCCCCcCEE
Q 016237 210 DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHD-FEGD--QTY----SEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~-~~~~--~~~----~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
.|+...|+..|+++|+++|++|+++|+.++. ..++.++.. +.++ ..+ ....+..+..+..+++++.++||+|
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav 98 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTF-GFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIF 98 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEE
Confidence 5888999999999999999999999998753 233322211 1111 111 1123446677888999999999999
Q ss_pred EEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc-------CCCCCceeecCchh--------------
Q 016237 283 VVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA-------GVLKGKKCTAYPAV-------------- 340 (392)
Q Consensus 283 iipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a-------glL~g~~~T~~~~~-------------- 340 (392)
|||||+++.. ++.++.+.++|++|++++|+|++||||+.+|+.+ +|++||++|+|+..
T Consensus 99 ~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~ 178 (231)
T cd03147 99 FVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR 178 (231)
T ss_pred EECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence 9999998644 8999999999999999999999999999999998 99999999999975
Q ss_pred -----HHHHHHcCCeeeCCC-CC-ceEEEcCCeEEccCCCChHHHHHHHHHHh
Q 016237 341 -----KLNVLLAGASWLEPD-PI-DRCFTDGNLVSGAAWPGHPEFISQLMALL 386 (392)
Q Consensus 341 -----~~~~~~~~~~~~~~~-~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l 386 (392)
++.+++.|++|.+.. ++ ..||.|||+||++++.++.+++++++++|
T Consensus 179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 344567799988542 22 36999999999999999999999999976
No 30
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.95 E-value=4.2e-28 Score=216.07 Aligned_cols=178 Identities=25% Similarity=0.401 Sum_probs=143.9
Q ss_pred CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCcc-c---cCCCCCcccccccccCCCCCCcCEEEE
Q 016237 209 GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQT-Y---SEKPGHNFTLTANFESVDVSGYDALVV 284 (392)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~~i~~~~~~~~~~~~~~D~vii 284 (392)
.+|+++.|+..|+++|+++|++|+++|++++++..++.+......... . ....+..+..+..++++++++||+|+|
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~i 96 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFI 96 (221)
T ss_pred cCccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEE
Confidence 379999999999999999999999999998764443322211111000 0 012455678888999999899999999
Q ss_pred cCCCChh-hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC------CCCCceeecCchhH---------------H
Q 016237 285 PGGRAPE-YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG------VLKGKKCTAYPAVK---------------L 342 (392)
Q Consensus 285 pgg~~~~-~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag------lL~g~~~T~~~~~~---------------~ 342 (392)
|||+++. .+..++.+.+||+++++++|+|++||+|+++|+++| +|+||++|+||... .
T Consensus 97 pGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~ 176 (221)
T cd03141 97 PGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED 176 (221)
T ss_pred CCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence 9998754 478899999999999999999999999999999999 79999999998754 3
Q ss_pred HHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHh
Q 016237 343 NVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALL 386 (392)
Q Consensus 343 ~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l 386 (392)
.+++.|++|....+. ..+|+|+|+||++|+.++.++++++++.|
T Consensus 177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 467788888753311 26999999999999999999999999875
No 31
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.95 E-value=5.3e-28 Score=215.56 Aligned_cols=175 Identities=19% Similarity=0.229 Sum_probs=144.2
Q ss_pred CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccC---CCCCcccccccccCC------CCCCc
Q 016237 209 GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE---KPGHNFTLTANFESV------DVSGY 279 (392)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~i~~~~~~~~~------~~~~~ 279 (392)
..|+++.|+..|+++|+++||+|+++|+.|++++.++.+... .++.+.. ..+..+..+..++++ +.++|
T Consensus 20 ~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~--~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dY 97 (232)
T cd03148 20 STGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPH--EDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEY 97 (232)
T ss_pred CCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCcccccc--ccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhc
Confidence 479999999999999999999999999999877666554321 0011100 123445666677776 45799
Q ss_pred CEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCC------CCCceeecCchhHH----------
Q 016237 280 DALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAAGV------LKGKKCTAYPAVKL---------- 342 (392)
Q Consensus 280 D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~agl------L~g~~~T~~~~~~~---------- 342 (392)
|+||+|||+++.. ++.++.+.+++++|+++||+|+|||||+++|..+++ ++||++|+|+..++
T Consensus 98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~ 177 (232)
T cd03148 98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYM 177 (232)
T ss_pred eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccc
Confidence 9999999998754 999999999999999999999999999999999998 99999999988654
Q ss_pred ----------HHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHh
Q 016237 343 ----------NVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALL 386 (392)
Q Consensus 343 ----------~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l 386 (392)
.++..|++|... ++ .+||.||++||++++.|+..++.++++.|
T Consensus 178 ~~~~pf~le~~L~~~Ga~~~~~-~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 178 PGHLTWLVGEELKKMGMNIIND-DITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred cCcccccHHHHHHHcCCEEECC-CCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 345678888876 45 67999999999999999999999999976
No 32
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.95 E-value=1.7e-27 Score=218.73 Aligned_cols=199 Identities=16% Similarity=0.175 Sum_probs=168.2
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE 80 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (392)
+.+|+|+++|+|....+..+.+.|+.|| |.+.+++.++. ++.+++|+.+.+|..+++
T Consensus 10 ~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~----------------~V~ss~G~~i~~d~~~~~ 73 (328)
T COG4977 10 PQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG----------------PVRSSSGLSIAPDGGLEA 73 (328)
T ss_pred ceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC----------------CcccCCCceEecCCcccc
Confidence 4689999999999999999999999877 55777887775 589999999999999998
Q ss_pred CCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEE
Q 016237 81 IDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI 159 (392)
Q Consensus 81 ~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~ 159 (392)
.. .+|.|+++||.+++.....+++..||++.+++|..++++|+|+++||++|||+||+||+||.+.+.|++ ||....
T Consensus 74 ~~--~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~ 151 (328)
T COG4977 74 AP--PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRV 151 (328)
T ss_pred cC--cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCC
Confidence 66 599999999987665444589999999999999999999999999999999999999999999999998 898874
Q ss_pred cCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCcCC----------------CCccEEEEeCCCCCcchhHHHHHH
Q 016237 160 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITG----------------SDKRILFLCGDYMEDYEVAVPFQS 223 (392)
Q Consensus 160 ~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~----------------~~~~v~ill~~~~~~~e~~~~~~~ 223 (392)
... +|++||+++||+|..+++|+++++|+...+.... ....+......+.....+...++.
T Consensus 152 ~~~---lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~~~~~Q~~~~~~~~~~~~~~l~~~i~~ 228 (328)
T COG4977 152 TDR---LFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRSGGDRQRLPLLGRLGHRDPRLLRAIEL 228 (328)
T ss_pred CCc---eEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccCCCccccccccccCCCCCHHHHHHHHH
Confidence 333 6999999999999999999999999887776531 122344444556666677777777
Q ss_pred HHhc
Q 016237 224 LQAL 227 (392)
Q Consensus 224 ~~~~ 227 (392)
++.+
T Consensus 229 me~n 232 (328)
T COG4977 229 MEAN 232 (328)
T ss_pred HHHh
Confidence 7664
No 33
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.95 E-value=5e-27 Score=204.89 Aligned_cols=176 Identities=40% Similarity=0.708 Sum_probs=154.3
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccc-cCccccCcCcCCCCCCCc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPSKY 86 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 86 (392)
++||++++++||+..|+..|+++|+++|++++++++.++. ..+.++. +..+.++..++++++++|
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~y 67 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADY 67 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHC
Confidence 3689999999999999999999999999999999998741 0233444 466777788888877899
Q ss_pred cEEEEcCC-CCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc-ccCCeeEecCCCcHHHHHH----CCCeEEc
Q 016237 87 DGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWIE 160 (392)
Q Consensus 87 D~iiipGG-~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag-ll~g~~~T~~~~~~~~l~~----~~~~~~~ 160 (392)
|+|++||| ++++.+..++.++++++++++++|+|++||||+++|+.+| +++||++|+++...+.... .++.|++
T Consensus 68 dal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd 147 (188)
T COG0693 68 DALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVD 147 (188)
T ss_pred CEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEec
Confidence 99999999 8888877789999999999999999999999999999999 9999999999999888877 7999998
Q ss_pred CCC-cceeeecCc-eEecCCCCChHHHHHHHHHHhcCCc
Q 016237 161 PET-MAACVVDGN-IITGATYEGHPEFIRLFLKALGGTI 197 (392)
Q Consensus 161 ~~~-~~~~v~dg~-iiT~~g~~s~~~~~~~~i~~l~~~~ 197 (392)
... ...+|.||+ ++|+.++.++.+++..+++.+.+..
T Consensus 148 ~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 148 APLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred cccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence 831 112899999 9999999999999999999988654
No 34
>PRK04155 chaperone protein HchA; Provisional
Probab=99.95 E-value=2.9e-27 Score=215.97 Aligned_cols=179 Identities=21% Similarity=0.240 Sum_probs=142.0
Q ss_pred CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccC---CCCCccccccccc----CCC--CCCcC
Q 016237 210 DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE---KPGHNFTLTANFE----SVD--VSGYD 280 (392)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~i~~~~~~~----~~~--~~~~D 280 (392)
.|+++.|+..|+++|+++|++|+++|+.|++.+.++.++... .+.++. ..+..+..+..++ ++. .++||
T Consensus 72 tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~--d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYD 149 (287)
T PRK04155 72 TGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHE--DEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYA 149 (287)
T ss_pred CCccHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccccc--chhHHHHHHHhhhhccCceeHHHhhhhhcCCccccc
Confidence 578899999999999999999999999988766665543211 001111 1122233333333 333 67999
Q ss_pred EEEEcCCCCh-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC------CCCCceeecCchh-------------
Q 016237 281 ALVVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG------VLKGKKCTAYPAV------------- 340 (392)
Q Consensus 281 ~viipgg~~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag------lL~g~~~T~~~~~------------- 340 (392)
+||||||++. ..++.++.+.++|+++++++|+|++||||+++|..+| +++||++|+||..
T Consensus 150 aV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~ 229 (287)
T PRK04155 150 AVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPG 229 (287)
T ss_pred EEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccc
Confidence 9999999986 4489999999999999999999999999999999999 9999999999876
Q ss_pred ------HHHHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHhccccc
Q 016237 341 ------KLNVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVL 391 (392)
Q Consensus 341 ------~~~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~~ 391 (392)
++.++..|+++++.. + ..||.|||+||++|+.++.+|++.+++.|...+.
T Consensus 230 ~~~~~~e~~L~~~Ga~~~~~~-~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~~~ 286 (287)
T PRK04155 230 HLTWLFGEELKKMGVNIVNDD-ITGRVHKDRKLLTGDSPLASNALGKLAAQELLAAVA 286 (287)
T ss_pred cccchHHHHHHHcCCEEEcCC-CCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHHhc
Confidence 456777899998752 2 3699999999999999999999999999876553
No 35
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.95 E-value=5.1e-27 Score=206.16 Aligned_cols=171 Identities=18% Similarity=0.260 Sum_probs=147.4
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY 279 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 279 (392)
+.||+.|++++++++.|+..|+++|++++++++++|.+++. ...+.++.|..+.++..+++.+.++|
T Consensus 1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~ 67 (196)
T PRK11574 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDF 67 (196)
T ss_pred CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCC
Confidence 46789999999999999999999999999999999986421 12367788999999988988776789
Q ss_pred CEEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHHHH-HHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCC
Q 016237 280 DALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQI-LAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPI 357 (392)
Q Consensus 280 D~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~-La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~ 357 (392)
|+|+||||.+ ...+..++.+.+||++++++|++|+++|+|+++ |+.+|+|+|+++|.++.+.+. +|++.+.++.
T Consensus 68 D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~--~p~~~~~~~~-- 143 (196)
T PRK11574 68 DVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK--IPAEQWQDKR-- 143 (196)
T ss_pred CEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh--cccCcccCCC--
Confidence 9999999974 444677889999999999999999999999985 666999999999999887754 4777887654
Q ss_pred ceEEEcC--CeEEccCCCChHHHHHHHHHHhccc
Q 016237 358 DRCFTDG--NLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 358 ~~vv~dg--~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
++.|+ +++||+|+.++.||++++|+++.|+
T Consensus 144 --~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~ 175 (196)
T PRK11574 144 --VVWDARVNLLTSQGPGTAIDFALKIIDLLVGR 175 (196)
T ss_pred --EEEeCCccEEeCCCcchHHHHHHHHHHHhcCH
Confidence 66665 9999999999999999999999875
No 36
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.95 E-value=3.9e-27 Score=199.79 Aligned_cols=171 Identities=36% Similarity=0.525 Sum_probs=152.2
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
++.+.++..++.+..|+..+.++|++.|..|+++++.++. .+....+..+.+|..+.|.-.++||
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yD 69 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYD 69 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhcccccc
Confidence 5677888888999999999999999999999999998764 2455566666777766665558999
Q ss_pred EEEEcCC-CChhhccCChHHHHHHHHHHHcCCcEEEEehHH-HHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237 281 ALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHGQ-QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID 358 (392)
Q Consensus 281 ~viipgg-~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~ 358 (392)
+++|||| .|...|...+.+.+.+++|.+.|++|++||+|+ .+|+..|++.|+++|+||.++..+...+..|++++
T Consensus 70 viilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~--- 146 (247)
T KOG2764|consen 70 VIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR--- 146 (247)
T ss_pred EEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC---
Confidence 9999999 788889999999999999999999999999999 66666677779999999999999999899999875
Q ss_pred eEEEcCCeEEccCCCChHHHHHHHHHHhcccc
Q 016237 359 RCFTDGNLVSGAAWPGHPEFISQLMALLGIQV 390 (392)
Q Consensus 359 ~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~ 390 (392)
+|.||+++||+|+..+.+|++.|+|+|.|+.
T Consensus 147 -vv~dG~liTSrGpgT~~eFal~lvEqL~GKe 177 (247)
T KOG2764|consen 147 -VVKDGNLITSRGPGTAFEFALKLVEQLGGKE 177 (247)
T ss_pred -eEEeCcEEeccCCCchHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999875
No 37
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.95 E-value=4.7e-27 Score=206.37 Aligned_cols=171 Identities=23% Similarity=0.342 Sum_probs=143.6
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
|||+|+++|||++.|+..|+++|+++|++++++|..++. ..++.++.|.++.++.++++++.++||+
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~D~ 69 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDFDV 69 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCCCE
Confidence 689999999999999999999999999999999986421 0147788999999999999877678999
Q ss_pred EEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHH-hhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237 89 LVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA 166 (392)
Q Consensus 89 iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~-La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~ 166 (392)
|+||||.+ ...+..++.+++||+++++++++|++||+|+++ |+.+|+++|+++|+++..++. ++...+..+.
T Consensus 70 l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~---~p~~~~~~~~--- 143 (196)
T PRK11574 70 IVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK---IPAEQWQDKR--- 143 (196)
T ss_pred EEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh---cccCcccCCC---
Confidence 99999974 444677889999999999999999999999985 667999999999998776543 3433333332
Q ss_pred eeecC--ceEecCCCCChHHHHHHHHHHhcCCcC
Q 016237 167 CVVDG--NIITGATYEGHPEFIRLFLKALGGTIT 198 (392)
Q Consensus 167 ~v~dg--~iiT~~g~~s~~~~~~~~i~~l~~~~~ 198 (392)
++.|+ |++||+|+.++.|+++++++.+.++..
T Consensus 144 ~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~ 177 (196)
T PRK11574 144 VVWDARVNLLTSQGPGTAIDFALKIIDLLVGREK 177 (196)
T ss_pred EEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHH
Confidence 66665 999999999999999999999988763
No 38
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.95 E-value=1.1e-26 Score=219.64 Aligned_cols=169 Identities=16% Similarity=0.198 Sum_probs=150.5
Q ss_pred CCCccEEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccc
Q 016237 199 GSDKRILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANF 271 (392)
Q Consensus 199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~ 271 (392)
.+++++.+++++|++..++..+.|+|+.++ |+|+++|+++++ ++++.|..+.+|..+
T Consensus 7 ~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~----------------v~ss~g~~i~~d~~~ 70 (322)
T PRK09393 7 MHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGP----------------LRAAGGITVVADGGL 70 (322)
T ss_pred ccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCc----------------eEeCCCcEEeCCCCc
Confidence 346789999999999999999999997653 689999998775 788899999999888
Q ss_pred cCCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCC
Q 016237 272 ESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGA 349 (392)
Q Consensus 272 ~~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~ 349 (392)
++ .++||+||||||.+... ..++.+.+||+++++++++|+++|+|+++||++|||+|+++|+||...+.++ +|.+
T Consensus 71 ~~--~~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~ 147 (322)
T PRK09393 71 EL--LDRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAI 147 (322)
T ss_pred cc--cCCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCC
Confidence 86 45899999999876543 4589999999999999999999999999999999999999999999999887 5888
Q ss_pred eeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237 350 SWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 350 ~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
.+.++. .+|.||+++||+|..++.++++++++++.|+
T Consensus 148 ~~~~~~---~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~ 184 (322)
T PRK09393 148 RVDPDV---LYVDEGQILTSAGSAAGIDLCLHLVRRDFGS 184 (322)
T ss_pred EEeCCc---eEEecCCEEecccHHHHHHHHHHHHHHHhCH
Confidence 888765 6899999999999999999999999988763
No 39
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.94 E-value=1.4e-26 Score=212.71 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=150.8
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccccccc
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFE 272 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 272 (392)
+...+.+++++++....++.+.+.|+.+| |.+..++.++++ +.++.|..+.+|..++
T Consensus 9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~~----------------V~ss~G~~i~~d~~~~ 72 (328)
T COG4977 9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGGP----------------VRSSSGLSIAPDGGLE 72 (328)
T ss_pred CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCCC----------------cccCCCceEecCCccc
Confidence 45579999999999999999999999886 668888888775 7899999999999999
Q ss_pred CCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCe
Q 016237 273 SVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGAS 350 (392)
Q Consensus 273 ~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~ 350 (392)
+.. .+|++++.||.+++.....+++..|||+.+.+|..++++|+|+|+||++|||+||++|+||...+.|+ +|+++
T Consensus 73 ~~~--~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~ 150 (328)
T COG4977 73 AAP--PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVR 150 (328)
T ss_pred ccC--cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCC
Confidence 865 49999999988876655559999999999999999999999999999999999999999999999987 79999
Q ss_pred eeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237 351 WLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ 389 (392)
Q Consensus 351 ~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~ 389 (392)
..++ .+++||+++||+|..++.||+++||++..|.
T Consensus 151 -~~~~---lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~ 185 (328)
T COG4977 151 -VTDR---LFVIDGDRITCAGGTAAIDLMLALIRRDFGA 185 (328)
T ss_pred -CCCc---eEEecCCEEEcCCchHHHHHHHHHHHHHhCH
Confidence 4445 6999999999999999999999999987764
No 40
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.94 E-value=5.4e-26 Score=198.32 Aligned_cols=176 Identities=40% Similarity=0.676 Sum_probs=154.2
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCC-CCcccccccccCCCCCCc
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP-GHNFTLTANFESVDVSGY 279 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~ 279 (392)
++++++++.++++..|+..|+++|+++|++++++++.++. ..+.++. +..+..+..+++++.++|
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~y 67 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADY 67 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHC
Confidence 5789999999999999999999999999999999998751 1133334 355666678888777899
Q ss_pred CEEEEcCC-CChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC-CCCCceeecCchhHHHHHH----cCCeeeC
Q 016237 280 DALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG-VLKGKKCTAYPAVKLNVLL----AGASWLE 353 (392)
Q Consensus 280 D~viipgg-~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag-lL~g~~~T~~~~~~~~~~~----~~~~~~~ 353 (392)
|+|++||| ++++.+..++.+++++|+|++++|+|++||||+++|+.+| +|+||++|+++..++.+.. .|++|++
T Consensus 68 dal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd 147 (188)
T COG0693 68 DALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVD 147 (188)
T ss_pred CEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEec
Confidence 99999999 8888888789999999999999999999999999999999 9999999999999988887 8999998
Q ss_pred CCCC-ceEEEcCC-eEEccCCCChHHHHHHHHHHhcccc
Q 016237 354 PDPI-DRCFTDGN-LVSGAAWPGHPEFISQLMALLGIQV 390 (392)
Q Consensus 354 ~~~~-~~vv~dg~-lvT~~g~~~~~~~~~~li~~l~~~~ 390 (392)
...+ ..+|.||+ ++|+.++.+..+++.++++.+.+..
T Consensus 148 ~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 148 APLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred cccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence 8321 24899999 9999999999999999999998753
No 41
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.93 E-value=2.1e-25 Score=196.43 Aligned_cols=165 Identities=25% Similarity=0.318 Sum_probs=129.0
Q ss_pred CEEEEEec-----CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccC-------c
Q 016237 9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------A 76 (392)
Q Consensus 9 ~kI~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~ 76 (392)
+||+|++. +|++..|+..|+++|+++|++|+++|+.++..... .. ..+. .+.+..+..+..+ .
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~--~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVI--NH--LTGE-EMGETRNVLVESARIARGEIK 76 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccc--cC--cccc-ccccccceeeehhhhhccCCC
Confidence 58999998 99999999999999999999999999987532110 00 0000 1223333333322 5
Q ss_pred CcCCCCCCCccEEEEcCCCCcc-----------cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecC-
Q 016237 77 TFDEIDPSKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY- 144 (392)
Q Consensus 77 ~~~~~~~~~~D~iiipGG~~~~-----------~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~- 144 (392)
.++++++++||+||||||+++. .++.++.++++++++++++|+|++||||+++|+.+.. +||++|++
T Consensus 77 ~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~ 155 (217)
T PRK11780 77 DLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGN 155 (217)
T ss_pred chhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecC
Confidence 7888888899999999998742 2355899999999999999999999999999998622 89999999
Q ss_pred -CCcHHHHHHCCCeEEcCCCcceeeec--CceEecCCCC
Q 016237 145 -PPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYE 180 (392)
Q Consensus 145 -~~~~~~l~~~~~~~~~~~~~~~~v~d--g~iiT~~g~~ 180 (392)
+...+.+++.|+.|++.+.+. +|+| +|+|||....
T Consensus 156 ~~~~~~~~~~aGa~~vd~~~~~-vvvD~~~~lvt~~~~~ 193 (217)
T PRK11780 156 DEDTAAAIEKMGGEHVDCPVDD-IVVDEENKVVTTPAYM 193 (217)
T ss_pred ChhhHHHHHHCCCEEEcCCCCe-EEEECCCCEEeCCccc
Confidence 888999999999999874322 5666 7899998644
No 42
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.93 E-value=9.4e-26 Score=188.61 Aligned_cols=141 Identities=40% Similarity=0.722 Sum_probs=123.8
Q ss_pred eEEEECCCCCCCCCCCccccCCCCccccccccc---CccccCcCcCCCCCCCccEEEEcCCCC-cccccCC-HHHHHHHH
Q 016237 37 SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG---HNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMN-DSVIDLVR 111 (392)
Q Consensus 37 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~D~iiipGG~~-~~~~~~~-~~l~~~l~ 111 (392)
+|+++++..+. .+.++.| .++.++.+++++++.+||+||||||++ +..+..+ +.++++++
T Consensus 1 ~V~~vs~~~~~---------------~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~ 65 (147)
T PF01965_consen 1 KVDVVSPGDGK---------------EVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK 65 (147)
T ss_dssp EEEEEESSSSS---------------EEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred CEEEEECCCCC---------------eEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence 47788887653 5788888 999999999999999999999999997 5567745 99999999
Q ss_pred HHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeeecC-ceEecCCCCChHHHHHHHH
Q 016237 112 KFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFL 190 (392)
Q Consensus 112 ~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~dg-~iiT~~g~~s~~~~~~~~i 190 (392)
++++++|+|++||+|+.+|+.+|+|+||++|+|+...+.++..+..|++... .+++|+ ||||++|+.++.+|++.++
T Consensus 66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv 143 (147)
T PF01965_consen 66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV 143 (147)
T ss_dssp HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999988889999998432 278999 9999999999999999999
Q ss_pred HHhc
Q 016237 191 KALG 194 (392)
Q Consensus 191 ~~l~ 194 (392)
+.|+
T Consensus 144 e~L~ 147 (147)
T PF01965_consen 144 EALG 147 (147)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9874
No 43
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.93 E-value=2.5e-25 Score=186.06 Aligned_cols=141 Identities=38% Similarity=0.674 Sum_probs=123.6
Q ss_pred eEEEEcCCCCCCCCCCCcccCCCCCccccCCCC---CcccccccccCCCCCCcCEEEEcCCCC-hhhccCC-hHHHHHHH
Q 016237 230 HVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG---HNFTLTANFESVDVSGYDALVVPGGRA-PEYLALN-ENVIALVK 304 (392)
Q Consensus 230 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~~~~~~~~D~viipgg~~-~~~~~~~-~~l~~~l~ 304 (392)
+|+++|+..+ +.++++.| ..+.++..+++++..+||+||||||++ ...++.+ +.+.++|+
T Consensus 1 ~V~~vs~~~~---------------~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~ 65 (147)
T PF01965_consen 1 KVDVVSPGDG---------------KEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK 65 (147)
T ss_dssp EEEEEESSSS---------------SEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred CEEEEECCCC---------------CeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence 4777877655 24777888 899999999999999999999999998 5667755 99999999
Q ss_pred HHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEEcC-CeEEccCCCChHHHHHHHH
Q 016237 305 DFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDG-NLVSGAAWPGHPEFISQLM 383 (392)
Q Consensus 305 ~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~dg-~lvT~~g~~~~~~~~~~li 383 (392)
+|++++|+|+|||+|+.+|+++|+|+||++|+||..+..++..+.++++... .++.|+ |+||++++.++.+|+++++
T Consensus 66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv 143 (147)
T PF01965_consen 66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV 143 (147)
T ss_dssp HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999989999999998332 488999 9999999999999999999
Q ss_pred HHhc
Q 016237 384 ALLG 387 (392)
Q Consensus 384 ~~l~ 387 (392)
+.|+
T Consensus 144 e~L~ 147 (147)
T PF01965_consen 144 EALG 147 (147)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9985
No 44
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.92 E-value=2e-24 Score=190.25 Aligned_cols=166 Identities=21% Similarity=0.242 Sum_probs=130.3
Q ss_pred CccEEEEeC-----CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccc-------
Q 016237 201 DKRILFLCG-----DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLT------- 268 (392)
Q Consensus 201 ~~~v~ill~-----~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~------- 268 (392)
|+|+++++. +|+++.|+..|++.|+++|++++++|+.++..+.... ..+..+....+..+..+
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINH-----LTGEEMGETRNVLVESARIARGEI 75 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccC-----ccccccccccceeeehhhhhccCC
Confidence 468899987 8999999999999999999999999998875332111 11111222223223222
Q ss_pred ccccCCCCCCcCEEEEcCCCCh-----------hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecC
Q 016237 269 ANFESVDVSGYDALVVPGGRAP-----------EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAY 337 (392)
Q Consensus 269 ~~~~~~~~~~~D~viipgg~~~-----------~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~ 337 (392)
..++++++++||+||||||+++ +.++.++.+.+++++|+++||+|+|||||+++|+.+.. +||++|++
T Consensus 76 ~~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~ 154 (217)
T PRK11780 76 KDLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIG 154 (217)
T ss_pred CchhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEec
Confidence 5678888889999999999874 22456999999999999999999999999999999732 99999999
Q ss_pred --chhHHHHHHcCCeeeCCCCCceEEEc--CCeEEccCCC
Q 016237 338 --PAVKLNVLLAGASWLEPDPIDRCFTD--GNLVSGAAWP 373 (392)
Q Consensus 338 --~~~~~~~~~~~~~~~~~~~~~~vv~d--g~lvT~~g~~ 373 (392)
+..+..+++.|++|++.... .+|.| +|+||+..+.
T Consensus 155 ~~~~~~~~~~~aGa~~vd~~~~-~vvvD~~~~lvt~~~~~ 193 (217)
T PRK11780 155 NDEDTAAAIEKMGGEHVDCPVD-DIVVDEENKVVTTPAYM 193 (217)
T ss_pred CChhhHHHHHHCCCEEEcCCCC-eEEEECCCCEEeCCccc
Confidence 99999999999999976322 36777 7899999754
No 45
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.92 E-value=1.6e-24 Score=189.48 Aligned_cols=173 Identities=22% Similarity=0.263 Sum_probs=130.8
Q ss_pred EEEe-----cCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccC-------cCcC
Q 016237 12 LLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFD 79 (392)
Q Consensus 12 ~ill-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~ 79 (392)
+|++ +|||+..|+..|+++|+++|++|+++|+.++....+..+.. . .+..+.+..+..+ .+++
T Consensus 2 ~~~~~~cg~~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~l~ 76 (213)
T cd03133 2 AVVLSGCGVYDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTG----E-AEGESRNVLVESARIARGNIKDLA 76 (213)
T ss_pred EEEEeCCcCCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccc----c-ccccccceeeehhhhhhcCCCchH
Confidence 5665 58999999999999999999999999998764222211111 0 2333444444444 6788
Q ss_pred CCCCCCccEEEEcCCCCc-ccc----------cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCC--C
Q 016237 80 EIDPSKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP--P 146 (392)
Q Consensus 80 ~~~~~~~D~iiipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~--~ 146 (392)
++++++||+|+||||+++ ..+ +.++.++++++++++++|+|++||+|+++|+.+.. +||++|+|+ .
T Consensus 77 ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~ 155 (213)
T cd03133 77 KLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAG 155 (213)
T ss_pred HCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHH
Confidence 888889999999999864 222 34889999999999999999999999999999766 999999999 7
Q ss_pred cHHHHHHCCCeEEcCCCcceeee-cCceEecCCCC---ChHHHHHHHH
Q 016237 147 VKPVLIAAGASWIEPETMAACVV-DGNIITGATYE---GHPEFIRLFL 190 (392)
Q Consensus 147 ~~~~l~~~~~~~~~~~~~~~~v~-dg~iiT~~g~~---s~~~~~~~~i 190 (392)
.++.+++.|+.|.+++.+..+|+ |||+|||+... +..+.++.+-
T Consensus 156 ~~~~l~~aGa~~~d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~~~ 203 (213)
T cd03133 156 TAAAIEKMGAEHVNCPVEEIVVDEKNKVVTTPAYMLADSIHEIADGIE 203 (213)
T ss_pred HHHHHHHCCCEEEeCCCCeEEEECCCCEEeCccccCCCCHHHHHHhHH
Confidence 88899999999997633323443 37999998764 4445555443
No 46
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.92 E-value=5.1e-24 Score=186.29 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=130.7
Q ss_pred CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccc-------ccccCCCCCCcCE
Q 016237 209 GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLT-------ANFESVDVSGYDA 281 (392)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------~~~~~~~~~~~D~ 281 (392)
++++++.|+..|+++|+++|++++++|+.++..+.++.... ..+....+..+..+ ..+++++.++||+
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDa 85 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTG-----EAEGESRNVLVESARIARGNIKDLAKLKAADFDA 85 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccc-----cccccccceeeehhhhhhcCCCchHHCCHhHCCE
Confidence 68999999999999999999999999999886554433221 12222334334333 5778888889999
Q ss_pred EEEcCCCCh-hhc----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCc--hhHHHHHHcC
Q 016237 282 LVVPGGRAP-EYL----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYP--AVKLNVLLAG 348 (392)
Q Consensus 282 viipgg~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~--~~~~~~~~~~ 348 (392)
||||||+++ +.+ +.++.+.+++++|++++|+|+|||+|+++|+.++. +||++|+|| ..+..++++|
T Consensus 86 lviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aG 164 (213)
T cd03133 86 LIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMG 164 (213)
T ss_pred EEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCC
Confidence 999999874 333 24889999999999999999999999999999876 999999999 8899999999
Q ss_pred CeeeCCCCCceEEEc--CCeEEccCCC---ChHHHHHHH
Q 016237 349 ASWLEPDPIDRCFTD--GNLVSGAAWP---GHPEFISQL 382 (392)
Q Consensus 349 ~~~~~~~~~~~vv~d--g~lvT~~g~~---~~~~~~~~l 382 (392)
+.|.+.... .+|.| ||+|||+.+. +..+.++-|
T Consensus 165 a~~~d~~~~-~vvvd~dg~lITs~~~~~~~~~~~~~~~~ 202 (213)
T cd03133 165 AEHVNCPVE-EIVVDEKNKVVTTPAYMLADSIHEIADGI 202 (213)
T ss_pred CEEEeCCCC-eEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence 999865222 35555 7999998864 555555544
No 47
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.84 E-value=9.2e-21 Score=157.61 Aligned_cols=113 Identities=25% Similarity=0.388 Sum_probs=103.9
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
++||+|+++|||+..|+..++++|+.+|++++++|++++ ++.++.|.++.++.++++.+..+||
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~----------------~v~s~~g~~i~~~~~l~~~~~~~~D 64 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG----------------GVVDSDGKTLEVDQTYAGAPSVLFD 64 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC----------------ceecCCCcEEecceeecCCChhhcC
Confidence 368999999999999999999999999999999999987 5788899999999999988777899
Q ss_pred EEEEcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCccc
Q 016237 88 GLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 136 (392)
Q Consensus 88 ~iiipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll 136 (392)
+|+||||.+... +..++.+.+||+++++++++|+++|+|+++|+++|+|
T Consensus 65 ~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll 114 (142)
T cd03132 65 AVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP 114 (142)
T ss_pred EEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence 999999986533 4678999999999999999999999999999999997
No 48
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.81 E-value=1.8e-19 Score=149.86 Aligned_cols=112 Identities=23% Similarity=0.442 Sum_probs=102.7
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
+++.++++++++..|+..++++|+.+|++++++|+++++ ++++.|..+.++..+++.+..+||+
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~----------------v~s~~g~~i~~~~~l~~~~~~~~D~ 65 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGG----------------VVDSDGKTLEVDQTYAGAPSVLFDA 65 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCc----------------eecCCCcEEecceeecCCChhhcCE
Confidence 579999999999999999999999999999999999875 6778888899998899877778999
Q ss_pred EEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCC
Q 016237 282 LVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAAGVL 329 (392)
Q Consensus 282 viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL 329 (392)
|+||||.+... +..++.+.+||+++++++|+|+++|+|+++|+++|+|
T Consensus 66 liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll 114 (142)
T cd03132 66 VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP 114 (142)
T ss_pred EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence 99999987533 5788999999999999999999999999999999987
No 49
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.64 E-value=7e-16 Score=155.87 Aligned_cols=115 Identities=23% Similarity=0.268 Sum_probs=106.6
Q ss_pred CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
++|||+||++||++..|+..+.++|.++|.++.+++++++ .+.++.|..+.+|.++.+.+...|
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G----------------~V~~s~G~~I~aD~t~~~~~Sv~F 659 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG----------------EVTADDGTVLPIAATFAGAPSLTF 659 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC----------------eEECCCCCEEecceeeccCCccCC
Confidence 4689999999999999999999999999999999999876 588899999999999999887789
Q ss_pred cEEEEcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccC
Q 016237 87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK 137 (392)
Q Consensus 87 D~iiipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~ 137 (392)
|+|+||||. ++..+..++.+++||+++++++|+|+++|+|+.+|+.+||..
T Consensus 660 DAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~ 711 (752)
T PRK11249 660 DAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD 711 (752)
T ss_pred CEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence 999999996 556678899999999999999999999999999999999854
No 50
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.54 E-value=4e-14 Score=143.24 Aligned_cols=115 Identities=20% Similarity=0.327 Sum_probs=106.1
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY 279 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 279 (392)
..++|+|++.+|++..++..++++|+++|.+++++|+++++ +.+..|..+.++.++++.....|
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~----------------V~~s~G~~I~aD~t~~~~~Sv~F 659 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGE----------------VTADDGTVLPIAATFAGAPSLTF 659 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCe----------------EECCCCCEEecceeeccCCccCC
Confidence 46899999999999999999999999999999999998875 77788999999999999877789
Q ss_pred CEEEEcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCC
Q 016237 280 DALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLK 330 (392)
Q Consensus 280 D~viipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~ 330 (392)
|+|+||||. +...+..++.+++||+++++++|+|+++|+|+++|+++||..
T Consensus 660 DAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~ 711 (752)
T PRK11249 660 DAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD 711 (752)
T ss_pred CEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence 999999996 466688899999999999999999999999999999999965
No 51
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.30 E-value=2.4e-11 Score=97.79 Aligned_cols=180 Identities=17% Similarity=0.181 Sum_probs=121.6
Q ss_pred CCEEEEEe-----cCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCC--CccccCCCCcccccccccCccccCcCcCC
Q 016237 8 KRSVLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVC--PTAVHQSTGHQTYSETRGHNFALNATFDE 80 (392)
Q Consensus 8 ~~kI~ill-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (392)
+|||++++ |||.+..|....+-.+.+.|.++..+.|+..+.... .....-.+.++...++..+.--.-..+.+
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~ 80 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ 80 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence 46999998 688899999999999999999999999986432210 00000000011111111111112235666
Q ss_pred CCCCCccEEEEcCCCCc-ccc----------cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-cccCCeeEe--cCCC
Q 016237 81 IDPSKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCT--AYPP 146 (392)
Q Consensus 81 ~~~~~~D~iiipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-gll~g~~~T--~~~~ 146 (392)
.++++||++++|||+|+ ..+ .-++++..+.+.+++.|||++-+|.++.+|..- | .+.+.| ....
T Consensus 81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g--~~~~~TIGnD~d 158 (217)
T COG3155 81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG--FPLRLTIGNDID 158 (217)
T ss_pred cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC--CceeEEecCCcc
Confidence 77889999999999985 222 236899999999999999999999999999864 2 223344 4566
Q ss_pred cHHHHHHCCCeEEcCCCcceeee-cCceEecCCCCChHHHHHHHHHHh
Q 016237 147 VKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLKAL 193 (392)
Q Consensus 147 ~~~~l~~~~~~~~~~~~~~~~v~-dg~iiT~~g~~s~~~~~~~~i~~l 193 (392)
..+.++..|+.++.++.+..+++ +++++|. .+.-++..+-+.-
T Consensus 159 Ta~a~~~mG~eHv~cPvd~iV~D~~~KvvtT----PAYMLA~~IaeAA 202 (217)
T COG3155 159 TAEALEEMGAEHVPCPVDDIVVDEDNKVVTT----PAYMLAQNIAEAA 202 (217)
T ss_pred HHHHHHHhCcccCCCCccceeecCCCceecC----hHHHHHHHHHHHH
Confidence 78889999999999988766665 4566664 2344455554443
No 52
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.26 E-value=3.3e-11 Score=108.57 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=91.7
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+|+.++|.+ .-....++|+++|+++.+++.... .. .+.+..+||+|+
T Consensus 1 v~vl~~pG~n--~~~~~~~al~~aG~~v~~v~~~~~-----------------~~-------------~~~~l~~~d~li 48 (238)
T cd01740 1 VAVLRFPGSN--CDRDMAYAFELAGFEAEDVWHNDL-----------------LA-------------GRKDLDDYDGVV 48 (238)
T ss_pred CEEEEcCCcC--CHHHHHHHHHHcCCCEEEEeccCC-----------------cc-------------ccCCHhhCCEEE
Confidence 6899999987 444688999999999999876421 00 011234799999
Q ss_pred EcCCCCc-cccc-----CCHH-HHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCC
Q 016237 91 IPGGRAP-EYLA-----MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET 163 (392)
Q Consensus 91 ipGG~~~-~~~~-----~~~~-l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~ 163 (392)
||||... +.+. .... +.++|+++++++++|++||.|.++|+++|+|.|+. +.++..+......+ .|++..
T Consensus 49 ipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~~- 125 (238)
T cd01740 49 LPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTLR- 125 (238)
T ss_pred ECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEEE-
Confidence 9999642 2221 1223 88999999999999999999999999999999976 66554432222111 344433
Q ss_pred cceeeecCceEecC
Q 016237 164 MAACVVDGNIITGA 177 (392)
Q Consensus 164 ~~~~v~dg~iiT~~ 177 (392)
++.+++++|+.
T Consensus 126 ---v~~~~si~t~~ 136 (238)
T cd01740 126 ---VENNDSPFTKG 136 (238)
T ss_pred ---EcCCCCceecC
Confidence 56788999986
No 53
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.23 E-value=5.3e-11 Score=107.29 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=91.2
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV 283 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi 283 (392)
++|+.++|.+ ......+.|+++|+++.+++.... .. + +.+.++||.|+
T Consensus 1 v~vl~~pG~n--~~~~~~~al~~aG~~v~~v~~~~~-----------------~~---~----------~~~l~~~d~li 48 (238)
T cd01740 1 VAVLRFPGSN--CDRDMAYAFELAGFEAEDVWHNDL-----------------LA---G----------RKDLDDYDGVV 48 (238)
T ss_pred CEEEEcCCcC--CHHHHHHHHHHcCCCEEEEeccCC-----------------cc---c----------cCCHhhCCEEE
Confidence 4688888887 556788999999999998876421 00 0 22345899999
Q ss_pred EcCCCCh-hhcc-----CChH-HHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCC
Q 016237 284 VPGGRAP-EYLA-----LNEN-VIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDP 356 (392)
Q Consensus 284 ipgg~~~-~~~~-----~~~~-l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~ 356 (392)
||||... +.+. .... +.++|+++.+++++|.+||.|.++|+++|+|.|+. |.++..+......+ +|+..
T Consensus 49 ipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~-- 124 (238)
T cd01740 49 LPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTL-- 124 (238)
T ss_pred ECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEE--
Confidence 9999742 2222 1223 88999999999999999999999999999999977 66665443222111 33432
Q ss_pred CceEEEcCCeEEcc
Q 016237 357 IDRCFTDGNLVSGA 370 (392)
Q Consensus 357 ~~~vv~dg~lvT~~ 370 (392)
.++.+++++|+.
T Consensus 125 --~v~~~~si~t~~ 136 (238)
T cd01740 125 --RVENNDSPFTKG 136 (238)
T ss_pred --EEcCCCCceecC
Confidence 356677888876
No 54
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.21 E-value=9.8e-11 Score=104.05 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=74.3
Q ss_pred CEEEEEecCCCCccchHHHHHHHH-hCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~-~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
+||+|+.++|.+ .-....++|+ .+|+++.++..+. .+ .++||
T Consensus 1 ~~v~Vl~~~G~n--~~~d~~~a~~~~~G~~~~~v~~~~---------------------------------~~--l~~~D 43 (219)
T PRK03619 1 MKVAVIVFPGSN--CDRDMARALRDLLGAEPEYVWHKE---------------------------------TD--LDGVD 43 (219)
T ss_pred CEEEEEecCCcC--hHHHHHHHHHhcCCCeEEEEecCc---------------------------------CC--CCCCC
Confidence 379999999988 2223378888 8999888875431 11 23799
Q ss_pred EEEEcCCCCc-c-----cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCee
Q 016237 88 GLVIPGGRAP-E-----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK 140 (392)
Q Consensus 88 ~iiipGG~~~-~-----~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~ 140 (392)
+|+||||.+. + ....+..+.+||++++++++++++||+|.++|+++|||+|+-
T Consensus 44 ~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 44 AVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred EEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence 9999999642 2 123457899999999999999999999999999999999853
No 55
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.20 E-value=1.2e-10 Score=105.49 Aligned_cols=100 Identities=23% Similarity=0.316 Sum_probs=75.0
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
++||+|+.++|++.. ..+.++|+++|+++.+++.... .+ ... +.++||
T Consensus 3 ~~kvaVl~~pG~n~d--~e~~~Al~~aG~~v~~v~~~~~---------------------------~~-~~~--~l~~~D 50 (261)
T PRK01175 3 SIRVAVLRMEGTNCE--DETVKAFRRLGVEPEYVHINDL---------------------------AA-ERK--SVSDYD 50 (261)
T ss_pred CCEEEEEeCCCCCCH--HHHHHHHHHCCCcEEEEeeccc---------------------------cc-ccc--chhhCC
Confidence 358999999999833 3668999999999999876421 00 001 234899
Q ss_pred EEEEcCCCCc-ccccCC--------HHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCe
Q 016237 88 GLVIPGGRAP-EYLAMN--------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 139 (392)
Q Consensus 88 ~iiipGG~~~-~~~~~~--------~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~ 139 (392)
+|+||||.+. +.+... +.+.+.|+++.++++++.+||.|.++|+++|+|.|.
T Consensus 51 gLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~ 111 (261)
T PRK01175 51 CLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGF 111 (261)
T ss_pred EEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCC
Confidence 9999999642 322221 234578899999999999999999999999999873
No 56
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.14 E-value=2.7e-10 Score=91.79 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=115.5
Q ss_pred CccEEEEe-----CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccc-------
Q 016237 201 DKRILFLC-----GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLT------- 268 (392)
Q Consensus 201 ~~~v~ill-----~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~------- 268 (392)
|||+.+++ ++|.+..|-...+-.+.+.|.++.++.|+.. +..+.++-.++....+.+.-+..-
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-----Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i 75 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-----QVHVINHLTGEAMPETRNVLVESARIARGEI 75 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-----hhhhhhhccccccchhhhHHHHHHHHhhccc
Confidence 57788876 7899999999999999999999999999854 345555544443322222211111
Q ss_pred ccccCCCCCCcCEEEEcCCCChhh-c----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceee--
Q 016237 269 ANFESVDVSGYDALVVPGGRAPEY-L----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCT-- 335 (392)
Q Consensus 269 ~~~~~~~~~~~D~viipgg~~~~~-~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T-- 335 (392)
..+...++++||++++|||+|... + .-++.+..+.+.|++.|||++-+|.+|.+|...-- ..-+.|
T Consensus 76 ~~l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g-~~~~~TIG 154 (217)
T COG3155 76 RPLAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG-FPLRLTIG 154 (217)
T ss_pred cchhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC-CceeEEec
Confidence 134555678999999999998422 2 45789999999999999999999999999987621 233444
Q ss_pred cCchhHHHHHHcCCeeeCCCCCceEEEc--CCeEEccCC
Q 016237 336 AYPAVKLNVLLAGASWLEPDPIDRCFTD--GNLVSGAAW 372 (392)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~vv~d--g~lvT~~g~ 372 (392)
..+...+.++..|+..++..... +|.| .+++|.-..
T Consensus 155 nD~dTa~a~~~mG~eHv~cPvd~-iV~D~~~KvvtTPAY 192 (217)
T COG3155 155 NDIDTAEALEEMGAEHVPCPVDD-IVVDEDNKVVTTPAY 192 (217)
T ss_pred CCccHHHHHHHhCcccCCCCccc-eeecCCCceecChHH
Confidence 35666777777887777654333 4443 578887543
No 57
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.09 E-value=9.8e-10 Score=97.66 Aligned_cols=95 Identities=32% Similarity=0.441 Sum_probs=74.3
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHH-hcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQ-ALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~-~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
++++|+.++|.+ .-....+.|+ .+|+++..++.+. .+.++||
T Consensus 1 ~~v~Vl~~~G~n--~~~d~~~a~~~~~G~~~~~v~~~~-----------------------------------~~l~~~D 43 (219)
T PRK03619 1 MKVAVIVFPGSN--CDRDMARALRDLLGAEPEYVWHKE-----------------------------------TDLDGVD 43 (219)
T ss_pred CEEEEEecCCcC--hHHHHHHHHHhcCCCeEEEEecCc-----------------------------------CCCCCCC
Confidence 378999999977 3333488888 7898877775420 0234799
Q ss_pred EEEEcCCCCh-h-----hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCce
Q 016237 281 ALVVPGGRAP-E-----YLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKK 333 (392)
Q Consensus 281 ~viipgg~~~-~-----~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~ 333 (392)
+|+||||... + .....+.+.+||++++++++++++||+|.++|+++|||+|+-
T Consensus 44 ~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 44 AVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred EEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence 9999998752 2 123457899999999999999999999999999999999964
No 58
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.08 E-value=6.2e-10 Score=100.91 Aligned_cols=100 Identities=24% Similarity=0.412 Sum_probs=75.0
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY 279 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 279 (392)
+++|++|+.++|++ +-..+.++|+++|+++.+++.... .+ . ....++|
T Consensus 2 ~~~kvaVl~~pG~n--~d~e~~~Al~~aG~~v~~v~~~~~---------------------------~~--~-~~~l~~~ 49 (261)
T PRK01175 2 ESIRVAVLRMEGTN--CEDETVKAFRRLGVEPEYVHINDL---------------------------AA--E-RKSVSDY 49 (261)
T ss_pred CCCEEEEEeCCCCC--CHHHHHHHHHHCCCcEEEEeeccc---------------------------cc--c-ccchhhC
Confidence 45689999999998 334668999999999988875310 00 0 0124589
Q ss_pred CEEEEcCCCCh-hhccCC--------hHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCC
Q 016237 280 DALVVPGGRAP-EYLALN--------ENVIALVKDFMEAKKPVASICHGQQILAAAGVLKG 331 (392)
Q Consensus 280 D~viipgg~~~-~~~~~~--------~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g 331 (392)
|+|+||||.+. +.+... +.+.+.|+++.+++|+|.+||.|.++|+++|||.|
T Consensus 50 DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 50 DCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred CEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence 99999999642 332221 23447899999999999999999999999999988
No 59
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.08 E-value=3.8e-10 Score=97.20 Aligned_cols=94 Identities=29% Similarity=0.420 Sum_probs=76.1
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC-Cc
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS-GY 279 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~ 279 (392)
++|++|+.++|.+ .-.-.+..|+++|++...+-. .+.... +|
T Consensus 2 ~~kvaVi~fpGtN--~d~d~~~A~~~aG~~~~~V~~-----------------------------------~d~~~~~~~ 44 (231)
T COG0047 2 RPKVAVLRFPGTN--CDYDMAAAFERAGFEAEDVWH-----------------------------------SDLLLGRDF 44 (231)
T ss_pred CceEEEEEcCCcC--chHHHHHHHHHcCCCceEEEe-----------------------------------eecccCCCc
Confidence 5799999999988 777778888888877555522 222222 79
Q ss_pred CEEEEcCCCCh-hhc-----cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCC
Q 016237 280 DALVVPGGRAP-EYL-----ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKG 331 (392)
Q Consensus 280 D~viipgg~~~-~~~-----~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g 331 (392)
|+|++|||+.. +++ .....+.+-++++.++|+++.+||+|.++|.++|||.|
T Consensus 45 d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 45 DGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred cEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 99999999863 333 34488999999999999999999999999999999999
No 60
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.06 E-value=7.1e-10 Score=95.49 Aligned_cols=94 Identities=29% Similarity=0.439 Sum_probs=75.8
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC-Cc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS-KY 86 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 86 (392)
++||+|+.+||.+ .-.....+|+++|+++..+--+. .... +|
T Consensus 2 ~~kvaVi~fpGtN--~d~d~~~A~~~aG~~~~~V~~~d-----------------------------------~~~~~~~ 44 (231)
T COG0047 2 RPKVAVLRFPGTN--CDYDMAAAFERAGFEAEDVWHSD-----------------------------------LLLGRDF 44 (231)
T ss_pred CceEEEEEcCCcC--chHHHHHHHHHcCCCceEEEeee-----------------------------------cccCCCc
Confidence 3689999999998 66677788889999887765431 1122 69
Q ss_pred cEEEEcCCCCc-ccc-----cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCC
Q 016237 87 DGLVIPGGRAP-EYL-----AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138 (392)
Q Consensus 87 D~iiipGG~~~-~~~-----~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g 138 (392)
|+|++|||++- +.+ ..-..+.+-++++.++++++.+||+|.++|.++|||.|
T Consensus 45 d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 45 DGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred cEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 99999999853 222 23467889999999999999999999999999999999
No 61
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.04 E-value=2.1e-09 Score=96.17 Aligned_cols=94 Identities=27% Similarity=0.430 Sum_probs=72.7
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
|||+|+.++|.+. -....++|+++|+++.++..... + .++||+
T Consensus 1 ~~v~Vl~~~G~n~--~~~~~~al~~~G~~~~~i~~~~~---------------------------------~--l~~~d~ 43 (227)
T TIGR01737 1 MKVAVIRFPGTNC--DRDTVYALRLLGVDAEIVWYEDG---------------------------------S--LPDYDG 43 (227)
T ss_pred CeEEEEeCCCcCc--HHHHHHHHHHCCCeEEEEecCCC---------------------------------C--CCCCCE
Confidence 4899999999873 22335888899999888743210 1 236999
Q ss_pred EEEcCCCCc-cc-----ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCe
Q 016237 89 LVIPGGRAP-EY-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 139 (392)
Q Consensus 89 iiipGG~~~-~~-----~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~ 139 (392)
|+||||... +. +..+..+.++|+++.+++++|.+||.|.++|+.+|+|.|.
T Consensus 44 lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 44 VVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred EEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence 999999642 21 2335678899999999999999999999999999999984
No 62
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.91 E-value=1.3e-08 Score=91.02 Aligned_cols=94 Identities=28% Similarity=0.456 Sum_probs=72.4
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
++|+|+.+++.+ .-....+.|+++|+++.++.... .. .+++|+
T Consensus 1 ~~v~Vl~~~G~n--~~~~~~~al~~~G~~~~~i~~~~------------------------------~~-----l~~~d~ 43 (227)
T TIGR01737 1 MKVAVIRFPGTN--CDRDTVYALRLLGVDAEIVWYED------------------------------GS-----LPDYDG 43 (227)
T ss_pred CeEEEEeCCCcC--cHHHHHHHHHHCCCeEEEEecCC------------------------------CC-----CCCCCE
Confidence 478999999886 33334688888998888774320 00 236999
Q ss_pred EEEcCCCCh-hh-----ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCc
Q 016237 282 LVVPGGRAP-EY-----LALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGK 332 (392)
Q Consensus 282 viipgg~~~-~~-----~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~ 332 (392)
|++|||... +. +..+..+.++|+++.+++++|.+||.|.++|+++|+|.|.
T Consensus 44 lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 44 VVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred EEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence 999998742 21 2335678899999999999999999999999999999984
No 63
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.82 E-value=3.8e-08 Score=76.72 Aligned_cols=91 Identities=33% Similarity=0.580 Sum_probs=75.8
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|++++.+++...++..+.+.|+++++++++++....+ ... .....+||+|+
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~li 51 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI 51 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEE
Confidence 5788999999999999999999999999999998652 111 12345899999
Q ss_pred EcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHh
Q 016237 91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130 (392)
Q Consensus 91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~L 130 (392)
+|||..... ...+..+.+++++...++++++++|.|+++|
T Consensus 52 i~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 52 LPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred ECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 999976433 2247899999999999999999999999998
No 64
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.76 E-value=1.2e-08 Score=92.26 Aligned_cols=100 Identities=27% Similarity=0.391 Sum_probs=70.7
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.||+|+.++|.+ .-.....+|+.+|++++.+..+.- . -.+....+||+
T Consensus 2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~dl-----------------~-------------~~~~~l~~~~~ 49 (259)
T PF13507_consen 2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHINDL-----------------L-------------SGESDLDDFDG 49 (259)
T ss_dssp -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCHH-----------------H-------------TTS--GCC-SE
T ss_pred CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEec-----------------c-------------cccCchhhCcE
Confidence 589999999998 666778899999999998875420 0 01113458999
Q ss_pred EEEcCCCCc-ccc----------cCCHHHHHHHHHHHhC-CCeEEEEchhhHHhhcCcccCCee
Q 016237 89 LVIPGGRAP-EYL----------AMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRK 140 (392)
Q Consensus 89 iiipGG~~~-~~~----------~~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~agll~g~~ 140 (392)
|++|||.+. +.+ ..+..+.+.|++++++ ++++.+||+|.++|.+.|||.|.+
T Consensus 50 lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~ 113 (259)
T PF13507_consen 50 LVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGE 113 (259)
T ss_dssp EEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT--
T ss_pred EEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCcc
Confidence 999999753 222 2345678899999999 999999999999999999998843
No 65
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.75 E-value=1.7e-08 Score=85.49 Aligned_cols=83 Identities=24% Similarity=0.348 Sum_probs=65.0
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.||+||..+|..-. -..+|++.|+++.++... ++ ..+||+
T Consensus 3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~----------------------------------~~--l~~~D~ 42 (179)
T PRK13526 3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN----------------------------------ND--FDSIDR 42 (179)
T ss_pred cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH----------------------------------HH--HhCCCE
Confidence 58999999987643 667888888876665421 22 237999
Q ss_pred EEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 89 iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
|++|||.+.. .+.++..+.+.|+++.+ +|++++||.|+.+|++
T Consensus 43 LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 43 LVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred EEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 9999997644 45666779999999885 7899999999999998
No 66
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.73 E-value=3e-08 Score=87.18 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=73.4
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||++++.++........+.+.|++.|+++++...+. ..+ ..+||+
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--------------------------------~~~--l~~~d~ 46 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR--------------------------------PGD--LPDCDA 46 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC--------------------------------hHH--hccCCE
Confidence 3799999999998888899999999998887765431 112 236999
Q ss_pred EEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|++|||.+.. .+..+..+.++|++++++++++.+||.|.++|+.+
T Consensus 47 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 47 LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 9999996432 23344568999999999999999999999999987
No 67
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.70 E-value=1.6e-07 Score=73.19 Aligned_cols=91 Identities=34% Similarity=0.592 Sum_probs=74.9
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV 283 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi 283 (392)
+.+++.+++...++..+.+.|+.+++++++++..++. ... .....+||+++
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~li 51 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI 51 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEE
Confidence 3567788888888999999999999999999998653 111 22446899999
Q ss_pred EcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHH
Q 016237 284 VPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQIL 323 (392)
Q Consensus 284 ipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~L 323 (392)
+|||..... ...++.+.++++++..++++++++|.|+++|
T Consensus 52 i~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 52 LPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred ECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 999876433 2357999999999999999999999999999
No 68
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.67 E-value=4.1e-08 Score=84.82 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=67.1
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
||+|+..+|... ...+.|++.|+++.++++.. + .++||+|
T Consensus 1 ~igvl~~qg~~~----e~~~~l~~~g~~~~~v~~~~----------------------------------~--l~~~d~l 40 (184)
T TIGR03800 1 KIGVLALQGAVR----EHARALEALGVEGVEVKRPE----------------------------------Q--LDEIDGL 40 (184)
T ss_pred CEEEEEccCCHH----HHHHHHHHCCCEEEEECChH----------------------------------H--hccCCEE
Confidence 589999988653 36699999999998886521 1 2379999
Q ss_pred EEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 90 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 90 iipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+||||.+.. .+..+..+.+.|++++++++++.+||.|.++|++.
T Consensus 41 iipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 41 IIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred EECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 999997532 24455678899999999999999999999999987
No 69
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.64 E-value=4e-08 Score=88.91 Aligned_cols=99 Identities=24% Similarity=0.375 Sum_probs=71.7
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
.|++|+.++|.+ .-.....+|+.+|++++.+..+. ..-.+.++++||+
T Consensus 2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~d------------------------------l~~~~~~l~~~~~ 49 (259)
T PF13507_consen 2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHIND------------------------------LLSGESDLDDFDG 49 (259)
T ss_dssp -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCH------------------------------HHTTS--GCC-SE
T ss_pred CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEe------------------------------cccccCchhhCcE
Confidence 589999999988 78888999999999988876531 1111124568999
Q ss_pred EEEcCCCCh-hhc----------cCChHHHHHHHHHHHc-CCcEEEEehHHHHHHHcCCCCCc
Q 016237 282 LVVPGGRAP-EYL----------ALNENVIALVKDFMEA-KKPVASICHGQQILAAAGVLKGK 332 (392)
Q Consensus 282 viipgg~~~-~~~----------~~~~~l~~~l~~~~~~-g~~i~aiC~G~~~La~aglL~g~ 332 (392)
|+||||++. +++ ..++.+.+.|++|.++ ++++.+||+|.++|.++|||.+.
T Consensus 50 lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~ 112 (259)
T PF13507_consen 50 LVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG 112 (259)
T ss_dssp EEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred EEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence 999999853 222 2346778999999999 99999999999999999999984
No 70
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.61 E-value=2.7e-07 Score=68.54 Aligned_cols=91 Identities=32% Similarity=0.571 Sum_probs=73.2
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+++..+++...++..+.+.+++.++++++++....+ ... .....+||+++
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~~~li 51 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI 51 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCc----------------ccc-------------cCCcccCCEEE
Confidence 4678888888889999999999999999999987642 100 22345899999
Q ss_pred EcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHh
Q 016237 91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130 (392)
Q Consensus 91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~L 130 (392)
+|||..... ...+..+.+++++.++++++++++|.|++++
T Consensus 52 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 52 LPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 999976433 2247899999999999999999999998764
No 71
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.54 E-value=2.8e-07 Score=80.96 Aligned_cols=91 Identities=23% Similarity=0.341 Sum_probs=72.6
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
+|+++++..+........+.+.|+..|+++++...+. .+ +..+||+
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--------------------------------~~--~l~~~d~ 46 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR--------------------------------PG--DLPDCDA 46 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC--------------------------------hH--HhccCCE
Confidence 3789999999888888888899999998777665420 01 1236999
Q ss_pred EEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 282 LVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 282 viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
||||||.+.. .+..+..+.++|+++.++++++.+||.|.++|+.+
T Consensus 47 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 47 LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 9999997632 24455678999999999999999999999999998
No 72
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.47 E-value=6.2e-07 Score=77.92 Aligned_cols=85 Identities=24% Similarity=0.381 Sum_probs=64.8
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||+|+...|-.. ...+.|+.+|+++.++++. .+ .++||+
T Consensus 2 m~~~i~~~~g~~~----~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~dg 41 (189)
T PRK13525 2 MKIGVLALQGAVR----EHLAALEALGAEAVEVRRP----------------------------------ED--LDEIDG 41 (189)
T ss_pred CEEEEEEcccCHH----HHHHHHHHCCCEEEEeCCh----------------------------------hH--hccCCE
Confidence 5899999876442 3357788899988887531 11 237999
Q ss_pred EEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|++|||.... .+..+..+.+++++++++++++.+||.|.++|+.+
T Consensus 42 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 42 LILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred EEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 9999996422 23445667899999999999999999999999975
No 73
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.47 E-value=9.4e-07 Score=65.57 Aligned_cols=90 Identities=36% Similarity=0.577 Sum_probs=70.9
Q ss_pred EEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEE
Q 016237 205 LFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVV 284 (392)
Q Consensus 205 ~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vii 284 (392)
.++..++....++..+.+.|++.++++.+++...... .. .....+||++++
T Consensus 2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-------------~~~~~~~~~lii 52 (92)
T cd03128 2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPV----------------ES-------------DVDLDDYDGLIL 52 (92)
T ss_pred EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcc----------------cc-------------cCCcccCCEEEE
Confidence 4666777777788899999999999999999875530 00 224468999999
Q ss_pred cCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHH
Q 016237 285 PGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQIL 323 (392)
Q Consensus 285 pgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~L 323 (392)
|||..... ...+..+.+++++++.++++++++|.|++++
T Consensus 53 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 53 PGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred CCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 99887433 2357999999999999999999999998753
No 74
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.46 E-value=7.1e-07 Score=77.11 Aligned_cols=84 Identities=24% Similarity=0.312 Sum_probs=65.3
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
|+.++...|.. ....+.|++.|+++.++++. ++ .++||++
T Consensus 1 ~igvl~~qg~~----~e~~~~l~~~g~~~~~v~~~----------------------------------~~--l~~~d~l 40 (184)
T TIGR03800 1 KIGVLALQGAV----REHARALEALGVEGVEVKRP----------------------------------EQ--LDEIDGL 40 (184)
T ss_pred CEEEEEccCCH----HHHHHHHHHCCCEEEEECCh----------------------------------HH--hccCCEE
Confidence 46777777643 33668999999888777541 11 2369999
Q ss_pred EEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 283 VVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 283 iipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+||||.+.. .+..+..+.++|++++++++++.++|.|.++|+++
T Consensus 41 iipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 41 IIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred EECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 999997642 34556778999999999999999999999999998
No 75
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.45 E-value=4.6e-07 Score=76.83 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=62.2
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
.++.|+...|... .-...|++.|+++.++.. .++ ..+||.
T Consensus 3 ~~igVLalqG~~~----Eh~~al~~lG~~v~~v~~----------------------------------~~~--l~~~D~ 42 (179)
T PRK13526 3 QKVGVLAIQGGYQ----KHADMFKSLGVEVKLVKF----------------------------------NND--FDSIDR 42 (179)
T ss_pred cEEEEEECCccHH----HHHHHHHHcCCcEEEECC----------------------------------HHH--HhCCCE
Confidence 5788888887542 266777787776554431 111 237899
Q ss_pred EEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237 282 LVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAA 325 (392)
Q Consensus 282 viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ 325 (392)
||+|||.+.. .+..+..+.+.|+++.+ +|++.++|.|+++|++
T Consensus 43 LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 43 LVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred EEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 9999997654 45566779999999885 7899999999999999
No 76
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.42 E-value=1.3e-06 Score=76.62 Aligned_cols=79 Identities=29% Similarity=0.386 Sum_probs=62.1
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCc---cc
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAP---EY 99 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~---~~ 99 (392)
=+..-++.|+++|.++.++++..+ +++ .+||+||+|||... ..
T Consensus 12 ~y~e~~~~l~~~G~~v~~~s~~~~--------------------------------~~l--~~~D~lilPGG~~~~~~~~ 57 (198)
T cd03130 12 YYPENLELLEAAGAELVPFSPLKD--------------------------------EEL--PDADGLYLGGGYPELFAEE 57 (198)
T ss_pred ccHHHHHHHHHCCCEEEEECCCCC--------------------------------CCC--CCCCEEEECCCchHHHHHH
Confidence 355567888899999999886421 112 24999999999643 34
Q ss_pred ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237 100 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135 (392)
Q Consensus 100 ~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl 135 (392)
+.++..+.+.|+++.+++++|.+||.|.++|++...
T Consensus 58 L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~~ 93 (198)
T cd03130 58 LSANQSMRESIRAFAESGGPIYAECGGLMYLGESLD 93 (198)
T ss_pred HHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHhh
Confidence 666778999999999999999999999999998643
No 77
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.41 E-value=1.7e-06 Score=75.75 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=65.1
Q ss_pred CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCC
Q 016237 210 DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRA 289 (392)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~ 289 (392)
|..-..-+..-++.|+++|.++.++++..+ ++ ..++|+||+|||..
T Consensus 6 d~aF~f~y~e~~~~l~~~G~~v~~~s~~~~--------------------------------~~--l~~~D~lilPGG~~ 51 (198)
T cd03130 6 DEAFNFYYPENLELLEAAGAELVPFSPLKD--------------------------------EE--LPDADGLYLGGGYP 51 (198)
T ss_pred cCccccccHHHHHHHHHCCCEEEEECCCCC--------------------------------CC--CCCCCEEEECCCch
Confidence 433444566678889999999988876311 11 22489999999864
Q ss_pred h---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCC
Q 016237 290 P---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGV 328 (392)
Q Consensus 290 ~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~agl 328 (392)
. ..+..+..+.+.|+++.++|++|.+||.|.++|++...
T Consensus 52 ~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~~ 93 (198)
T cd03130 52 ELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESLD 93 (198)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHhh
Confidence 3 34667778999999999999999999999999998743
No 78
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.32 E-value=6e-06 Score=74.15 Aligned_cols=95 Identities=26% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY 279 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 279 (392)
||+++.++-....+ .+..+.+.|++.|++++++.+..+. . ... +..+|
T Consensus 1 ~m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~------------------------~----~~~--~~~~~ 48 (234)
T PRK07053 1 MMKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD------------------------L----ETL--DALEP 48 (234)
T ss_pred CCceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc------------------------c----CCC--CccCC
Confidence 46777777666555 7778899999999998888664221 0 011 23479
Q ss_pred CEEEEcCCCCh--h--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 280 DALVVPGGRAP--E--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 280 D~viipgg~~~--~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
|.|||+||... + ..+.-..+.++|+++.+.++|+.+||.|.++|+.+
T Consensus 49 d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 49 DLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA 99 (234)
T ss_pred CEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 99999998642 1 13445688899999999999999999999999988
No 79
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.32 E-value=5.4e-06 Score=74.58 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=67.4
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
|||+|+....++..+. ..+.++++|+++++.....+ .. +.. +..+||+
T Consensus 1 m~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g-----------------------~~------~p~-~~~~~d~ 48 (235)
T PRK08250 1 MRVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAG-----------------------EA------LPE-NADGFDL 48 (235)
T ss_pred CeEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCC-----------------------CC------CCC-CccccCE
Confidence 4799999999995555 45777889998888654321 01 110 2347999
Q ss_pred EEEcCCCC-ccc-ccCC-----HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRA-PEY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~-~~~-~~~~-----~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|||.||.. +.. .... ....+||++++++++++.+||.|.++|+.+
T Consensus 49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA 100 (235)
T ss_pred EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 99999953 221 1112 466899999999999999999999999986
No 80
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.31 E-value=1.9e-06 Score=77.18 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=66.8
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
|+||+||..+|... ...+.|+++|.++.+++.. +++ .++|
T Consensus 1 ~m~igVLa~qG~~~----e~~~aL~~lG~ev~~v~~~----------------------------------~~L--~~~D 40 (248)
T PLN02832 1 MMAIGVLALQGSFN----EHIAALRRLGVEAVEVRKP----------------------------------EQL--EGVS 40 (248)
T ss_pred CcEEEEEeCCCchH----HHHHHHHHCCCcEEEeCCH----------------------------------HHh--ccCC
Confidence 35899999998653 3368888899888776542 222 2689
Q ss_pred EEEEcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 88 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 88 ~iiipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
.||+|||.+. ..+.....+.+.|+++.++++++.++|.|..+|++..
T Consensus 41 gLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 41 GLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred EEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence 9999998753 2244444688999999999999999999999999874
No 81
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.30 E-value=3.6e-06 Score=73.16 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=63.7
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
++++.++...+.. ....+.|+..|+++..+++. + +.++||
T Consensus 1 ~m~~~i~~~~g~~----~~~~~~l~~~g~~~~~~~~~----------------------------------~--~l~~~d 40 (189)
T PRK13525 1 MMKIGVLALQGAV----REHLAALEALGAEAVEVRRP----------------------------------E--DLDEID 40 (189)
T ss_pred CCEEEEEEcccCH----HHHHHHHHHCCCEEEEeCCh----------------------------------h--HhccCC
Confidence 3567777766533 33357788888887776431 1 134799
Q ss_pred EEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 281 ALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 281 ~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.|++|||.... .+..+..+.+++|+++++++||.+||.|.++|+.+
T Consensus 41 giii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 41 GLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred EEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 99999997532 24556777899999999999999999999999985
No 82
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.30 E-value=6.5e-06 Score=73.92 Aligned_cols=94 Identities=22% Similarity=0.165 Sum_probs=69.9
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
||+|+|+-....+ .+....+.|++.|++++++....+. ....+ ..+||
T Consensus 2 m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~----------------------------~~~~~--~~~~d 49 (234)
T PRK07053 2 MKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD----------------------------LETLD--ALEPD 49 (234)
T ss_pred CceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc----------------------------cCCCC--ccCCC
Confidence 4689988876666 5666789999999999988764321 00112 23799
Q ss_pred EEEEcCCC-Cccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 88 GLVIPGGR-APEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 88 ~iiipGG~-~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+|||+||. ++.. ...-..+.++|+++.++++++.+||.|.++|+.+
T Consensus 50 ~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 50 LLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA 99 (234)
T ss_pred EEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 99999986 3321 1223478899999999999999999999999987
No 83
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.29 E-value=2.3e-06 Score=75.09 Aligned_cols=87 Identities=23% Similarity=0.267 Sum_probs=65.6
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||+||=+..- .+....+.|+++|+++.+++.. .++ .+||+
T Consensus 1 ~~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~~--~~~d~ 41 (200)
T PRK13143 1 MMIVIIDYGVG---NLRSVSKALERAGAEVVITSDP----------------------------------EEI--LDADG 41 (200)
T ss_pred CeEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH----------------------------------HHH--ccCCE
Confidence 36888876643 4567789999999998887421 112 37999
Q ss_pred EEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 89 LVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 89 iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
|++|||.... .+...+.+.++|+++.++++|+.+||.|.++|+++.
T Consensus 42 iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~ 88 (200)
T PRK13143 42 IVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFESS 88 (200)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence 9999964322 234456789999999999999999999999999864
No 84
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.28 E-value=2.7e-06 Score=74.28 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=65.8
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+++.++... .+......+...|+++.++++.. + +.++|+|+
T Consensus 1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~----------------------------------~--~~~~d~li 42 (194)
T cd01750 1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE----------------------------------G--LGDADLII 42 (194)
T ss_pred CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC----------------------------------C--CCCCCEEE
Confidence 4677776544 56777788888999999987642 1 23789999
Q ss_pred EcCCCCc-cccc--CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 91 IPGGRAP-EYLA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 91 ipGG~~~-~~~~--~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
+|||... ..+. ++..+.+.|+++.+++++|.+||.|.++|++.-
T Consensus 43 lpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 43 LPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred ECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 9999743 2222 245689999999999999999999999999874
No 85
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.23 E-value=1.4e-05 Score=71.99 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=67.9
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
++++++....++ +.....+.+++.|+++++..+..+ ..+ .+ +.++||+
T Consensus 1 m~i~vi~h~~~e--~~g~~~~~~~~~g~~~~~~~~~~g-----------------------~~~------p~-~~~~~d~ 48 (235)
T PRK08250 1 MRVHFIIHESFE--APGAYLKWAENRGYDISYSRVYAG-----------------------EAL------PE-NADGFDL 48 (235)
T ss_pred CeEEEEecCCCC--CchHHHHHHHHCCCeEEEEEccCC-----------------------CCC------CC-CccccCE
Confidence 367888888888 566677888889988888654311 011 10 2357999
Q ss_pred EEEcCCCCh-hh----ccCC--hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 282 LVVPGGRAP-EY----LALN--ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 282 viipgg~~~-~~----~~~~--~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
|||.||... .. .+.- ....+||++++++++|+.+||.|.++|+.+
T Consensus 49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA 100 (235)
T ss_pred EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 999999642 21 1111 467899999999999999999999999988
No 86
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.18 E-value=7.3e-06 Score=88.38 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=78.9
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCC--CCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI--DPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~ 85 (392)
.+||+|+.++|.+ .=.....+|.++|+++..+..+.-. ... +. .++.++ +..+
T Consensus 977 kpkvaIl~~pGtN--ce~d~a~Af~~aG~~~~~v~~~dl~-----------------~~~----i~--~s~~~~~~~l~~ 1031 (1239)
T TIGR01857 977 KPRVVIPVFPGTN--SEYDSAKAFEKEGAEVNLVIFRNLN-----------------EEA----LV--ESVETMVDEIDK 1031 (1239)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEEecCc-----------------ccc----cc--cchhhhhccccc
Confidence 5799999999998 5566677888899998888754210 000 00 011111 2348
Q ss_pred ccEEEEcCCCCc-cc----------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCee
Q 016237 86 YDGLVIPGGRAP-EY----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK 140 (392)
Q Consensus 86 ~D~iiipGG~~~-~~----------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~ 140 (392)
|++|++|||++. +. +..++.+.+-+++++++++++.+||+|.++|.+.|||.+.+
T Consensus 1032 ~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~ 1097 (1239)
T TIGR01857 1032 SQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGN 1097 (1239)
T ss_pred CcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCcc
Confidence 999999999852 22 24567899999999999999999999999999999998543
No 87
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.17 E-value=8.5e-06 Score=71.55 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=63.5
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
|+.|+-+..- ......+.|++.|+++.+++.. .+ .++||++
T Consensus 2 ~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--~~~~d~i 42 (200)
T PRK13143 2 MIVIIDYGVG---NLRSVSKALERAGAEVVITSDP----------------------------------EE--ILDADGI 42 (200)
T ss_pred eEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH----------------------------------HH--HccCCEE
Confidence 4555555433 4677889999999887776320 11 2379999
Q ss_pred EEcCCCCh-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 283 VVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 283 iipgg~~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+||||..+ +.+...+.+.++|+++.++++|+.+||.|.++|+++
T Consensus 43 ii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 43 VLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 99996443 234556778899999999999999999999999986
No 88
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.15 E-value=1e-05 Score=87.94 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.+||+|+.++|.+ .-.....+|..+||++..+..+. +.+ ......+|+
T Consensus 1037 ~pkVaVl~~pGtN--~~~e~~~Af~~aGf~~~~V~~~d------------------l~~------------~~~~L~~~~ 1084 (1307)
T PLN03206 1037 KPKVAIIREEGSN--GDREMAAAFYAAGFEPWDVTMSD------------------LLN------------GRISLDDFR 1084 (1307)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeee------------------ccc------------cccccccee
Confidence 5799999999998 55667788889999987776542 000 011234799
Q ss_pred EEEEcCCCCc-c----------cccCCHHHHHHHHHHHh-CCCeEEEEchhhHHhhcCcccCCee
Q 016237 88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRK 140 (392)
Q Consensus 88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~~-~~~~i~aic~G~~~La~agll~g~~ 140 (392)
+|++|||++. + .+..++.+.+-++++++ +++++.+||+|.++|.+.|||.|-+
T Consensus 1085 glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206 1085 GIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred EEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence 9999999742 1 23567889999999995 5999999999999999999998754
No 89
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.14 E-value=1.1e-05 Score=70.39 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=63.3
Q ss_pred EEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEE
Q 016237 205 LFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVV 284 (392)
Q Consensus 205 ~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vii 284 (392)
+++.++... .+......++..|++++++++.. + +.++|+||+
T Consensus 2 ~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~-----------------------------~-------~~~~d~lil 43 (194)
T cd01750 2 AVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE-----------------------------G-------LGDADLIIL 43 (194)
T ss_pred EeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC-----------------------------C-------CCCCCEEEE
Confidence 445555433 56677777888888888887630 1 347899999
Q ss_pred cCCCCh-hhccC--ChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 285 PGGRAP-EYLAL--NENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 285 pgg~~~-~~~~~--~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
|||... ..+.. +..+.+.|+++.++|+||.++|.|.++|++.-
T Consensus 44 pGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 44 PGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred CCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 999753 22322 55789999999999999999999999999875
No 90
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.13 E-value=3.9e-06 Score=72.56 Aligned_cols=83 Identities=28% Similarity=0.418 Sum_probs=63.5
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+++..+|... ...+.|++.|+++..+++.. + ..+||+|+
T Consensus 1 igvl~~qg~~~----e~~~~l~~~g~~v~~v~~~~----------------------------------~--l~~~dgii 40 (183)
T cd01749 1 IGVLALQGDFR----EHIRALERLGVEVIEVRTPE----------------------------------D--LEGIDGLI 40 (183)
T ss_pred CEEEEecCCcH----HHHHHHHHCCCeEEEECCHH----------------------------------H--hccCCEEE
Confidence 57788777664 22389999999998887631 1 23799999
Q ss_pred EcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 91 IPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 91 ipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+|||... .....+..+.++|+++.++++++.++|.|..+|+++
T Consensus 41 i~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~ 85 (183)
T cd01749 41 IPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE 85 (183)
T ss_pred ECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 9999642 113344567899999999999999999999999976
No 91
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.10 E-value=3e-05 Score=69.86 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237 198 TGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS 277 (392)
Q Consensus 198 ~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 277 (392)
...+++++++...+.+ ......+.|+..|+++++..+..+. .+.+ +.+
T Consensus 4 ~~~~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~~-----------------------------~~p~-~l~ 51 (239)
T PRK06490 4 ARDKRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLGD-----------------------------PLPD-TLE 51 (239)
T ss_pred cCCCceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCCC-----------------------------CCCC-ccc
Confidence 3457788888777666 6777899999999998888654220 0111 234
Q ss_pred CcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+||.++|.||... +..+....+.+||+++.+.++|+.+||-|.++|+.+
T Consensus 52 ~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 52 DHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH 102 (239)
T ss_pred ccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 7999999998753 223334567899999999999999999999999998
No 92
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.07 E-value=3.4e-05 Score=69.56 Aligned_cols=94 Identities=24% Similarity=0.208 Sum_probs=69.5
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
++||+||...+++ ......+.|++.|+++++..+..+. .+ .++ ..+||
T Consensus 7 ~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~~-----------------------~~-----p~~--l~~~d 54 (239)
T PRK06490 7 KRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLGD-----------------------PL-----PDT--LEDHA 54 (239)
T ss_pred CceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCCC-----------------------CC-----CCc--ccccC
Confidence 5789999977776 5556779999999999987654220 00 122 33799
Q ss_pred EEEEcCCCC-ccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 88 GLVIPGGRA-PEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 88 ~iiipGG~~-~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+++|.||.. +.. ..-...+.+||++++++++++.+||-|.++|+.+
T Consensus 55 gvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 55 GAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH 102 (239)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 999999864 221 1112457899999999999999999999999987
No 93
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.06 E-value=1.4e-05 Score=87.36 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=77.0
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.+||+|+.++|.+ .=.....+|..+||++..+..+.- .-...+.++|+
T Consensus 1055 ~p~vail~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl------------------------------~~~~~~l~~~~ 1102 (1310)
T TIGR01735 1055 RPKVAILREQGVN--GDREMAAAFDRAGFEAWDVHMSDL------------------------------LAGRVHLDEFR 1102 (1310)
T ss_pred CceEEEEECCCCC--CHHHHHHHHHHhCCCcEEEEEecc------------------------------ccCCcchhhee
Confidence 3699999999998 555666788899999888775420 01111234799
Q ss_pred EEEEcCCCCc-c----------cccCCHHHHHHHHHHH-hCCCeEEEEchhhHHhh-cCcccCCe
Q 016237 88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR 139 (392)
Q Consensus 88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~-~~~~~i~aic~G~~~La-~agll~g~ 139 (392)
+|++|||++- + .+..++.+.+-+++++ ++++++.+||+|.++|. ..|||.|.
T Consensus 1103 ~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1103 GLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred EEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence 9999999731 1 1456788999999999 78999999999999999 88999873
No 94
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.06 E-value=2.1e-05 Score=77.78 Aligned_cols=90 Identities=22% Similarity=0.245 Sum_probs=69.5
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.||+|.-.+-|+. -+..=++.|++.|.++.++++-.. ++ ..+||+
T Consensus 246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~--------------------------------~~--l~~~D~ 290 (451)
T PRK01077 246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD--------------------------------EA--LPDCDG 290 (451)
T ss_pred ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC--------------------------------CC--CCCCCE
Confidence 4899998885553 233345778889999999886321 11 227999
Q ss_pred EEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|++|||... ..+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus 291 lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 291 LYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES 338 (451)
T ss_pred EEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 999999742 336677889999999999999999999999999876
No 95
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=98.06 E-value=1.4e-05 Score=70.39 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=62.6
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||+|+-+..-+ +....++|++.|+++.+++.. +++ .++|.
T Consensus 2 ~~v~iid~~~GN---~~sl~~al~~~g~~v~vv~~~----------------------------------~~l--~~~d~ 42 (210)
T CHL00188 2 MKIGIIDYSMGN---LHSVSRAIQQAGQQPCIINSE----------------------------------SEL--AQVHA 42 (210)
T ss_pred cEEEEEEcCCcc---HHHHHHHHHHcCCcEEEEcCH----------------------------------HHh--hhCCE
Confidence 589999887554 466678888899988887431 111 25899
Q ss_pred EEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|++||+..+. ....+..+.+.|++++++++++.+||.|.++|++.
T Consensus 43 iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~ 90 (210)
T CHL00188 43 LVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFET 90 (210)
T ss_pred EEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhc
Confidence 9999954322 11222356678888899999999999999999875
No 96
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.04 E-value=2.3e-05 Score=86.06 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
++||+|+.++|.+ .-.....+|..+||++..+..+.- . . .+....+|+
T Consensus 1035 ~pkv~il~~pG~N--~~~e~~~Af~~aG~~~~~v~~~dl-----------------~---------~----~~~~l~~~~ 1082 (1290)
T PRK05297 1035 RPKVAILREQGVN--SHVEMAAAFDRAGFDAIDVHMSDL-----------------L---------A----GRVTLEDFK 1082 (1290)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCCeEEEEeecC-----------------c---------C----CCCChhhCc
Confidence 4699999999998 556677888899999888775420 0 0 001244899
Q ss_pred EEEEcCCCCc-c----------cccCCHHHHHHHHHHH-hCCCeEEEEchhhHHhhcCc-ccCC
Q 016237 88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG 138 (392)
Q Consensus 88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~-~~~~~i~aic~G~~~La~ag-ll~g 138 (392)
+|++|||++. + .+..|+.+.+-+++++ ++++++.+||+|.++|.+.| ++.|
T Consensus 1083 ~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1083 GLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred EEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence 9999999642 1 1345788999999987 67999999999999999997 6654
No 97
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.02 E-value=3.5e-05 Score=67.00 Aligned_cols=91 Identities=27% Similarity=0.370 Sum_probs=65.5
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCC---CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
||+|+..+.... .....+.|+++| +++++....... . ..+ ..+|
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~----------------------------~-~~~--~~~~ 47 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAGE----------------------------L-LPD--LDDY 47 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCCC----------------------------C-CCC--cccC
Confidence 577887765553 666778888887 677776554321 0 122 3489
Q ss_pred cEEEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 87 DGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 87 D~iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|+|+++||.... .....+.+.++|+++.++++++.+||.|.++|+.+
T Consensus 48 dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 48 DGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97 (188)
T ss_pred CEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 999999997422 12223678999999999999999999999999876
No 98
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=97.99 E-value=2.9e-05 Score=69.69 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=64.7
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
|+++.|+.+.|.. ....+.|+++|.++.+++.. ++ ..++|
T Consensus 1 ~m~igVLa~qG~~----~e~~~aL~~lG~ev~~v~~~----------------------------------~~--L~~~D 40 (248)
T PLN02832 1 MMAIGVLALQGSF----NEHIAALRRLGVEAVEVRKP----------------------------------EQ--LEGVS 40 (248)
T ss_pred CcEEEEEeCCCch----HHHHHHHHHCCCcEEEeCCH----------------------------------HH--hccCC
Confidence 4579999988744 34468888888776665431 12 23689
Q ss_pred EEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 281 ALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 281 ~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.||+|||... ..+.....+.+.|+++.++|+|+.++|.|-++|++.
T Consensus 41 gLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 41 GLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred EEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 9999998753 224444568999999999999999999999999976
No 99
>PHA03366 FGAM-synthase; Provisional
Probab=97.98 E-value=3.4e-05 Score=84.54 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=76.6
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
..||+|+.++|.+ .-.....+|..+||++..+..+.- . -... .++|+
T Consensus 1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dL--------------------------~----~~~~-l~~f~ 1074 (1304)
T PHA03366 1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEEL--------------------------K----DGTF-LDEFS 1074 (1304)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeecC--------------------------C----CCCc-cccce
Confidence 4699999999998 556677888899999988876521 0 0111 34799
Q ss_pred EEEEcCCCCc-c----------cccCCHHHHHHHHHHHh-CCCeEEEEch-hhHHhhcCcccC
Q 016237 88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVK 137 (392)
Q Consensus 88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~~-~~~~i~aic~-G~~~La~agll~ 137 (392)
.|++|||++. + .+..|+.+.+.++++++ +++.+.+||+ |.++|.+.|+|.
T Consensus 1075 glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366 1075 GLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred EEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence 9999999853 1 14578899999999995 5999999999 999999999994
No 100
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.94 E-value=5.8e-05 Score=81.65 Aligned_cols=108 Identities=17% Similarity=0.248 Sum_probs=80.1
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCC--CCC
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESV--DVS 277 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~ 277 (392)
...|++|+.++|.+ .-.-....|+++|+++..+..+.-. .+. + ...++++ +..
T Consensus 976 ~kpkvaIl~~pGtN--ce~d~a~Af~~aG~~~~~v~~~dl~--------------------~~~-i--~~s~~~~~~~l~ 1030 (1239)
T TIGR01857 976 EKPRVVIPVFPGTN--SEYDSAKAFEKEGAEVNLVIFRNLN--------------------EEA-L--VESVETMVDEID 1030 (1239)
T ss_pred CCCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEEecCc--------------------ccc-c--ccchhhhhcccc
Confidence 35799999999998 7777788888899988777654210 000 0 0111111 245
Q ss_pred CcCEEEEcCCCCh-hhc----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCc
Q 016237 278 GYDALVVPGGRAP-EYL----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGK 332 (392)
Q Consensus 278 ~~D~viipgg~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~ 332 (392)
+|++|++|||++. +.+ ..++.+.+-+++|.++++++.+||+|-++|.+.|||.+.
T Consensus 1031 ~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1031 KSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred cCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence 8999999999853 222 345889999999999999999999999999999999853
No 101
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.93 E-value=6.3e-05 Score=74.45 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
.+|+|.-.+ ..-..+..-++.|++.|.++..+++... .+.++||+
T Consensus 246 ~~iava~d~-af~f~y~e~~~~L~~~g~~~~~~~~~~~----------------------------------~~l~~~D~ 290 (451)
T PRK01077 246 VRIAVARDA-AFNFYYPENLELLRAAGAELVFFSPLAD----------------------------------EALPDCDG 290 (451)
T ss_pred ceEEEEecC-cccccHHHHHHHHHHCCCEEEEeCCcCC----------------------------------CCCCCCCE
Confidence 467776666 3333344456888888989888876311 11237899
Q ss_pred EEEcCCCC---hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 282 LVVPGGRA---PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 282 viipgg~~---~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
||+|||.. ...+..+..+.+.|+++.++|++|.|+|.|.++|++.
T Consensus 291 lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 291 LYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES 338 (451)
T ss_pred EEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 99999974 2446778889999999999999999999999999977
No 102
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.92 E-value=8e-05 Score=64.72 Aligned_cols=90 Identities=30% Similarity=0.389 Sum_probs=63.9
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcC---CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALE---CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
++++..+... +.....+.+++++ +++++.-+..+. . .. +..+||
T Consensus 2 i~il~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~~----------------------------~-~~--~~~~~d 48 (188)
T cd01741 2 ILILQHDTPE--GPGLFEDLLREAGAETIEIDVVDVYAGE----------------------------L-LP--DLDDYD 48 (188)
T ss_pred EEEEECCCCC--CcchHHHHHHhcCCCCceEEEEecCCCC----------------------------C-CC--CcccCC
Confidence 5555555444 3667778888877 566666543210 0 11 345899
Q ss_pred EEEEcCCCChh---hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 281 ALVVPGGRAPE---YLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 281 ~viipgg~~~~---~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.|+++||.... ..+..+.+.++|+++.++++++.+||.|.++|+.+
T Consensus 49 gvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 49 GLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97 (188)
T ss_pred EEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 99999997532 23344779999999999999999999999999987
No 103
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.91 E-value=2.4e-05 Score=68.97 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=60.8
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+|+-+. ......+.+.|++.|.+++++... .+ ..+||+||
T Consensus 2 i~~~d~~---~~~~~~i~~~l~~~G~~v~~~~~~----------------------------------~~--l~~~d~ii 42 (205)
T PRK13141 2 IAIIDYG---MGNLRSVEKALERLGAEAVITSDP----------------------------------EE--ILAADGVI 42 (205)
T ss_pred EEEEEcC---CchHHHHHHHHHHCCCeEEEECCH----------------------------------HH--hccCCEEE
Confidence 4555444 334578889999999998886421 12 23799999
Q ss_pred EcCCCCcc-cc--cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 91 IPGGRAPE-YL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 91 ipGG~~~~-~~--~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
||||.... .+ ...+.+.++|++++++++++.+||.|.++|+..
T Consensus 43 ipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 43 LPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred ECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 99974322 11 122357899999999999999999999999986
No 104
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.87 E-value=1.9e-05 Score=66.01 Aligned_cols=49 Identities=31% Similarity=0.617 Sum_probs=42.8
Q ss_pred CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
..|+||||||.++. .+.....+.+-|+++..+|+|+.+.|.|..+||+-
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 68999999998753 26667788999999999999999999999999964
No 105
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.83 E-value=6.1e-05 Score=66.05 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=57.5
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc---
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY--- 99 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~--- 99 (392)
.+....+.|++.|+++++++.. .+ ..+||+|+|||+.....
T Consensus 10 ~~~~~~~~l~~~g~~v~v~~~~----------------------------------~~--l~~~d~iiipG~~~~~~~~~ 53 (198)
T cd01748 10 NLRSVANALERLGAEVIITSDP----------------------------------EE--ILSADKLILPGVGAFGDAMA 53 (198)
T ss_pred hHHHHHHHHHHCCCeEEEEcCh----------------------------------HH--hccCCEEEECCCCcHHHHHH
Confidence 5667789999999998887632 11 23699999999743321
Q ss_pred ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 100 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 100 ~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
...+..+.++++++.+++++|.+||.|.++|+.+
T Consensus 54 ~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 54 NLRERGLIEALKEAIASGKPFLGICLGMQLLFES 87 (198)
T ss_pred HHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence 1223457899999999999999999999999997
No 106
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.82 E-value=8.6e-05 Score=81.09 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
..||+|+.++|.+ .-.....+|..+||++..+..+.- ..... .++|+
T Consensus 929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl--------------------------~~~~~-----l~~f~ 975 (1202)
T TIGR01739 929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITEL--------------------------KKTDF-----LDTFS 975 (1202)
T ss_pred CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEeccC--------------------------CCCCc-----hhheE
Confidence 4689999999998 556677888899999988876531 00011 23799
Q ss_pred EEEEcCCCCc-----------ccccCCHHHHHHHHHHHh-CCCeEEEEch-hhHHhhcCcccCC
Q 016237 88 GLVIPGGRAP-----------EYLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVKG 138 (392)
Q Consensus 88 ~iiipGG~~~-----------~~~~~~~~l~~~l~~~~~-~~~~i~aic~-G~~~La~agll~g 138 (392)
.|++|||.+- ..+..++.+.+.++++++ +++++.+||+ |.++|.+.|++..
T Consensus 976 glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739 976 GLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred EEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence 9999998752 114568899999999995 5999999999 9999999999853
No 107
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.82 E-value=8.4e-05 Score=65.68 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=57.5
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCe--EEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVS--VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~--v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
|||+|+=|..-+ +......|++.|++ +.+.+. .+++ .++
T Consensus 2 ~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~~----------------------------------~~~l--~~~ 42 (209)
T PRK13146 2 MTVAIIDYGSGN---LRSAAKALERAGAGADVVVTAD----------------------------------PDAV--AAA 42 (209)
T ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCCccEEEECC----------------------------------HHHh--cCC
Confidence 589988776554 45556888888884 333321 2222 379
Q ss_pred cEEEEcCCCCcc----cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237 87 DGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135 (392)
Q Consensus 87 D~iiipGG~~~~----~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl 135 (392)
|.|||||+.... .+........+++..+++++|+.+||.|.++|++++.
T Consensus 43 d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~ 95 (209)
T PRK13146 43 DRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGL 95 (209)
T ss_pred CEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhccc
Confidence 999999974321 1222222334455556789999999999999999753
No 108
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.82 E-value=0.00011 Score=80.24 Aligned_cols=100 Identities=15% Similarity=0.255 Sum_probs=77.9
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
..|++|+.++|.+ .-......|..+||++..+..+.- . .+ .....+|+
T Consensus 1037 ~pkVaVl~~pGtN--~~~e~~~Af~~aGf~~~~V~~~dl-----------------~---~~----------~~~L~~~~ 1084 (1307)
T PLN03206 1037 KPKVAIIREEGSN--GDREMAAAFYAAGFEPWDVTMSDL-----------------L---NG----------RISLDDFR 1084 (1307)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeeec-----------------c---cc----------ccccccee
Confidence 5799999999998 777888889999998776654310 0 00 12245899
Q ss_pred EEEEcCCCCh-h----------hccCChHHHHHHHHHHH-cCCcEEEEehHHHHHHHcCCCCCc
Q 016237 281 ALVVPGGRAP-E----------YLALNENVIALVKDFME-AKKPVASICHGQQILAAAGVLKGK 332 (392)
Q Consensus 281 ~viipgg~~~-~----------~~~~~~~l~~~l~~~~~-~g~~i~aiC~G~~~La~aglL~g~ 332 (392)
.|++|||++. + .+..++.+.+.+++|++ +++++.+||+|-++|.+.|||.|.
T Consensus 1085 glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~ 1148 (1307)
T PLN03206 1085 GIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGP 1148 (1307)
T ss_pred EEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCC
Confidence 9999999842 1 23456889999999995 599999999999999999999875
No 109
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.81 E-value=5.8e-05 Score=65.26 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=55.6
Q ss_pred HHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh--hhccCChHH
Q 016237 222 QSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP--EYLALNENV 299 (392)
Q Consensus 222 ~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~--~~~~~~~~l 299 (392)
+.|++.|+++..+++. . +.+++|.+|+|||... .....+..+
T Consensus 15 ~~l~~~g~~v~~v~~~----------------------------------~--~l~~~dgiii~Gg~~~~~~~~~~~~~~ 58 (183)
T cd01749 15 RALERLGVEVIEVRTP----------------------------------E--DLEGIDGLIIPGGESTTIGKLLRRTGL 58 (183)
T ss_pred HHHHHCCCeEEEECCH----------------------------------H--HhccCCEEEECCchHHHHHHHHHhCCH
Confidence 8888999888887652 0 1347899999998752 224456678
Q ss_pred HHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 300 IALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 300 ~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
.++|+++.++++|+.++|.|.++|+.+-
T Consensus 59 ~~~i~~~~~~g~PvlGiC~G~qlL~~~~ 86 (183)
T cd01749 59 LDPLREFIRAGKPVFGTCAGLILLAKEV 86 (183)
T ss_pred HHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 9999999999999999999999999773
No 110
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.80 E-value=6.9e-05 Score=64.02 Aligned_cols=88 Identities=24% Similarity=0.242 Sum_probs=64.7
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
|++|+|+=|.-- .+.....+|+++|+++.+.+. .+++ ...|
T Consensus 1 m~~i~IIDyg~G---NL~Sv~~Aler~G~~~~vs~d----------------------------------~~~i--~~AD 41 (204)
T COG0118 1 MMMVAIIDYGSG---NLRSVKKALERLGAEVVVSRD----------------------------------PEEI--LKAD 41 (204)
T ss_pred CCEEEEEEcCcc---hHHHHHHHHHHcCCeeEEecC----------------------------------HHHH--hhCC
Confidence 357888876544 577788889999988766432 1222 3689
Q ss_pred EEEEcCCCC---cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 88 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 88 ~iiipGG~~---~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
.||+||=-. ++.-.+...+.+.|++....++|+.+||-|.++|.+.+
T Consensus 42 ~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~S 91 (204)
T COG0118 42 KLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFERS 91 (204)
T ss_pred EEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence 999999422 23323344899999999999999999999999998754
No 111
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=97.80 E-value=7.5e-05 Score=65.01 Aligned_cols=87 Identities=14% Similarity=0.277 Sum_probs=62.2
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
|||+|+= ..+ .......+.|++.|++++++..+.. ..+++ .+||+
T Consensus 2 ~~iliid--~~d-sf~~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~l--~~~d~ 46 (190)
T PRK06895 2 TKLLIIN--NHD-SFTFNLVDLIRKLGVPMQVVNVEDL------------------------------DLDEV--ENFSH 46 (190)
T ss_pred cEEEEEe--CCC-chHHHHHHHHHHcCCcEEEEECCcc------------------------------ChhHh--ccCCE
Confidence 4566664 333 3444588999999999999875421 12222 36999
Q ss_pred EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|||.||.+... ..+.+.++|++ +++++|+.+||-|.++|+.+
T Consensus 47 iIi~gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~ 88 (190)
T PRK06895 47 ILISPGPDVPR--AYPQLFAMLER-YHQHKSILGVCLGHQTLCEF 88 (190)
T ss_pred EEECCCCCChH--HhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 99999876322 24567888886 78899999999999999987
No 112
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.79 E-value=0.0001 Score=80.93 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY 279 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 279 (392)
+..+++|+.++|.+ .-......|..+||++..+..+. ..-...+.++|
T Consensus 1054 ~~p~vail~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d------------------------------l~~~~~~l~~~ 1101 (1310)
T TIGR01735 1054 VRPKVAILREQGVN--GDREMAAAFDRAGFEAWDVHMSD------------------------------LLAGRVHLDEF 1101 (1310)
T ss_pred CCceEEEEECCCCC--CHHHHHHHHHHhCCCcEEEEEec------------------------------cccCCcchhhe
Confidence 35789999999998 67777778989998877765431 11111234579
Q ss_pred CEEEEcCCCCh-hh----------ccCChHHHHHHHHHH-HcCCcEEEEehHHHHHH-HcCCCCCc
Q 016237 280 DALVVPGGRAP-EY----------LALNENVIALVKDFM-EAKKPVASICHGQQILA-AAGVLKGK 332 (392)
Q Consensus 280 D~viipgg~~~-~~----------~~~~~~l~~~l~~~~-~~g~~i~aiC~G~~~La-~aglL~g~ 332 (392)
+.|++|||+.. +. +..++.+.+.+++|+ ++++++.+||+|-++|. ..|||.|.
T Consensus 1102 ~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1102 RGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred eEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence 99999999742 11 345788999999999 88999999999999999 99999874
No 113
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.78 E-value=8.5e-05 Score=63.94 Aligned_cols=75 Identities=27% Similarity=0.381 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237 219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN 298 (392)
Q Consensus 219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~ 298 (392)
...+.+++.|+++.++..+.. .++....+||.|+++||.+.. ...+.
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgiil~GG~~~~--~~~~~ 57 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD-------------------------------AEEILKLDPDGIFLSNGPGDP--ALLDE 57 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEECCCCCCh--hHhHH
Confidence 357788888888888765411 111223479999999997521 12467
Q ss_pred HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 299 VIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 299 l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..++++++.++++|+.+||.|.++|+.+
T Consensus 58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~ 85 (178)
T cd01744 58 AIKTVRKLLGKKIPIFGICLGHQLLALA 85 (178)
T ss_pred HHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 8889999999999999999999999987
No 114
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.78 E-value=6.4e-05 Score=64.72 Aligned_cols=75 Identities=29% Similarity=0.362 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCHH
Q 016237 26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDS 105 (392)
Q Consensus 26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~~ 105 (392)
...+.|+++|.++.++..+.. .++.+..+||+|+++||.+.. .....
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgiil~GG~~~~--~~~~~ 57 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD-------------------------------AEEILKLDPDGIFLSNGPGDP--ALLDE 57 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEECCCCCCh--hHhHH
Confidence 357788889998888865421 112223379999999997421 12367
Q ss_pred HHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 106 VIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 106 l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
..++++++.++++|+.+||.|.++|+.+
T Consensus 58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~ 85 (178)
T cd01744 58 AIKTVRKLLGKKIPIFGICLGHQLLALA 85 (178)
T ss_pred HHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 8889999999999999999999999975
No 115
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=97.77 E-value=0.00011 Score=63.87 Aligned_cols=75 Identities=13% Similarity=0.283 Sum_probs=55.6
Q ss_pred hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237 217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN 296 (392)
Q Consensus 217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~ 296 (392)
.....+.|++.|++++++..+.. ..++ ...||.|||.||.+... ..
T Consensus 14 ~~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~--l~~~d~iIi~gGp~~~~--~~ 59 (190)
T PRK06895 14 TFNLVDLIRKLGVPMQVVNVEDL------------------------------DLDE--VENFSHILISPGPDVPR--AY 59 (190)
T ss_pred HHHHHHHHHHcCCcEEEEECCcc------------------------------ChhH--hccCCEEEECCCCCChH--Hh
Confidence 33489999999999888865411 0112 23689999999887322 23
Q ss_pred hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 297 ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+.+.++|++ +++++|+.+||.|.++|+.+
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIClG~Qlla~~ 88 (190)
T PRK06895 60 PQLFAMLER-YHQHKSILGVCLGHQTLCEF 88 (190)
T ss_pred hHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 567788876 67899999999999999988
No 116
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.76 E-value=9.5e-05 Score=65.22 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=56.0
Q ss_pred hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh-hhc-
Q 016237 216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP-EYL- 293 (392)
Q Consensus 216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~-~~~- 293 (392)
....+.+.|++.|.+++++.. + ++ ..+||.|||||+... +..
T Consensus 11 ~~~~i~~~l~~~G~~v~~~~~-------------------------------~---~~--l~~~d~iiipG~~~~~~~~~ 54 (205)
T PRK13141 11 NLRSVEKALERLGAEAVITSD-------------------------------P---EE--ILAADGVILPGVGAFPDAMA 54 (205)
T ss_pred hHHHHHHHHHHCCCeEEEECC-------------------------------H---HH--hccCCEEEECCCCchHHHHH
Confidence 467889999999988777531 0 11 236999999996432 211
Q ss_pred -cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 294 -ALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 294 -~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.....+.++|+++.++++|+.+||.|.++|+.+
T Consensus 55 ~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 55 NLRERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred HHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 123357899999999999999999999999996
No 117
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.74 E-value=0.00013 Score=64.27 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=65.9
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
|+++.|+-+..-+ +......|++.|+++.+++.. ++ ..++|
T Consensus 1 ~~~v~iid~~~GN---~~sl~~al~~~g~~v~vv~~~----------------------------------~~--l~~~d 41 (210)
T CHL00188 1 MMKIGIIDYSMGN---LHSVSRAIQQAGQQPCIINSE----------------------------------SE--LAQVH 41 (210)
T ss_pred CcEEEEEEcCCcc---HHHHHHHHHHcCCcEEEEcCH----------------------------------HH--hhhCC
Confidence 3467777776444 677788888889888777421 01 13589
Q ss_pred EEEEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc---------CCCCCce
Q 016237 281 ALVVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA---------GVLKGKK 333 (392)
Q Consensus 281 ~viipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a---------glL~g~~ 333 (392)
.||+||+..+.. ...+..+.+.|+++.++++|+.+||.|-++|++. |+++|+-
T Consensus 42 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v 106 (210)
T CHL00188 42 ALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQV 106 (210)
T ss_pred EEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEE
Confidence 999999543221 1122356778899999999999999999999986 4666644
No 118
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.73 E-value=0.00018 Score=64.87 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=40.2
Q ss_pred CCccEEEEcCCCCc-cc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+||+|||.||... .. ..--..+.+||+++.++++||.+||.|.++|+.+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 104 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA 104 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence 47999999999642 11 1122567999999999999999999999999976
No 119
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.72 E-value=5.4e-05 Score=63.80 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=47.2
Q ss_pred CCCCcCEEEEcCCCCh---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCC
Q 016237 275 DVSGYDALVVPGGRAP---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGV 328 (392)
Q Consensus 275 ~~~~~D~viipgg~~~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~agl 328 (392)
.++++|+||||||... ..+..+..+.+.|+++.++|.+|.|+|.|-++|.+.=.
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 4568999999999863 33677889999999999999999999999999998854
No 120
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.65 E-value=0.00026 Score=77.93 Aligned_cols=99 Identities=14% Similarity=0.242 Sum_probs=76.4
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
..|++|+.++|.+ .-......|+.+||++..+..+.- ..+ .....+|+
T Consensus 1035 ~pkv~il~~pG~N--~~~e~~~Af~~aG~~~~~v~~~dl--------------------~~~----------~~~l~~~~ 1082 (1290)
T PRK05297 1035 RPKVAILREQGVN--SHVEMAAAFDRAGFDAIDVHMSDL--------------------LAG----------RVTLEDFK 1082 (1290)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCCeEEEEeecC--------------------cCC----------CCChhhCc
Confidence 4689999999998 777888889999999877755411 001 01345899
Q ss_pred EEEEcCCCCh-hh----------ccCChHHHHHHHHHH-HcCCcEEEEehHHHHHHHcC-CCCC
Q 016237 281 ALVVPGGRAP-EY----------LALNENVIALVKDFM-EAKKPVASICHGQQILAAAG-VLKG 331 (392)
Q Consensus 281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~-~~g~~i~aiC~G~~~La~ag-lL~g 331 (392)
++++|||+.. +. +..++.+.+.+++|+ ++++++.+||+|.++|.+.| |+.+
T Consensus 1083 ~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1083 GLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred EEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence 9999999742 11 245678999999977 77899999999999999998 7765
No 121
>PRK05665 amidotransferase; Provisional
Probab=97.65 E-value=0.00042 Score=62.47 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=40.5
Q ss_pred CCccEEEEcCCC-Cccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGR-APEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~-~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+||++||.||. ++.. ..--..+.+||++++++++++.+||.|.++||.+
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 379999999995 3321 1122578999999999999999999999999987
No 122
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.65 E-value=0.00043 Score=66.06 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=73.0
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.||+|..-.-|+. =.-.-++.|++.|+++.++||-.+ +++ |++.|+
T Consensus 246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D--------------------------------~~l-P~~~D~ 291 (451)
T COG1797 246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLAD--------------------------------EEL-PPDVDA 291 (451)
T ss_pred ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCC--------------------------------CCC-CCCCCE
Confidence 5898877555553 455667899999999999998542 111 235899
Q ss_pred EEEcCCCC---cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~---~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|+||||.- +..|.++..+++.|++++..|++|.+-|.|-..|.+.
T Consensus 292 vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~ 339 (451)
T COG1797 292 VYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES 339 (451)
T ss_pred EEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence 99999973 3458889999999999999999999999999999875
No 123
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.63 E-value=0.00029 Score=62.23 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=56.3
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCe--EEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECH--VDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG 278 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~--v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 278 (392)
++|+.|+-+..-+ +......|++.|++ +.+.+ +.++ .++
T Consensus 1 ~~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~----------------------------------~~~~--l~~ 41 (209)
T PRK13146 1 MMTVAIIDYGSGN---LRSAAKALERAGAGADVVVTA----------------------------------DPDA--VAA 41 (209)
T ss_pred CCeEEEEECCCCh---HHHHHHHHHHcCCCccEEEEC----------------------------------CHHH--hcC
Confidence 3567766665444 56677888888873 22221 1122 247
Q ss_pred cCEEEEcCCCChh----hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 279 YDALVVPGGRAPE----YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 279 ~D~viipgg~~~~----~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
+|.|||||+.... .+........+++..+++++|+.++|.|.++|++++
T Consensus 42 ~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~ 94 (209)
T PRK13146 42 ADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG 94 (209)
T ss_pred CCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence 9999999965422 123222233445555679999999999999999984
No 124
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.63 E-value=0.00024 Score=70.31 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=69.4
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.||+|+-.+-|+..= ..=++.|++.|.++..+++-.+ +++ +++|+
T Consensus 245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d--------------------------------~~l--~~~d~ 289 (449)
T TIGR00379 245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED--------------------------------TEL--PDVDA 289 (449)
T ss_pred cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC--------------------------------CCC--CCCCE
Confidence 489999887666521 3445677788999999887421 112 26899
Q ss_pred EEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|+||||... ..+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus 290 l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 290 VYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred EEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 999999842 235567889999999999999999999999999976
No 125
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.62 E-value=0.00024 Score=62.33 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=57.1
Q ss_pred hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh---
Q 016237 216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--- 292 (392)
Q Consensus 216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--- 292 (392)
.+....+.|++.|++++++... ++ ..+||.|||||+..+..
T Consensus 10 ~~~~~~~~l~~~g~~v~v~~~~----------------------------------~~--l~~~d~iiipG~~~~~~~~~ 53 (198)
T cd01748 10 NLRSVANALERLGAEVIITSDP----------------------------------EE--ILSADKLILPGVGAFGDAMA 53 (198)
T ss_pred hHHHHHHHHHHCCCeEEEEcCh----------------------------------HH--hccCCEEEECCCCcHHHHHH
Confidence 5677788899999888877531 01 23689999999644322
Q ss_pred ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 293 LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 293 ~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
......+.++++++.++++||.++|.|.++|+.+
T Consensus 54 ~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 54 NLRERGLIEALKEAIASGKPFLGICLGMQLLFES 87 (198)
T ss_pred HHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence 1234467899999999999999999999999997
No 126
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.61 E-value=0.00043 Score=62.41 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=42.6
Q ss_pred CCcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.+||.|||.||... +..+....+.+||+++.++++||.+||.|.++|+.+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 104 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA 104 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence 47999999998753 224445778999999999999999999999999988
No 127
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.59 E-value=6.5e-05 Score=63.29 Aligned_cols=52 Identities=27% Similarity=0.474 Sum_probs=45.0
Q ss_pred CCCCccEEEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 82 DPSKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 82 ~~~~~D~iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.++++|+|++|||... ..+.++..+.+.|+++.++|++|.++|.|-++|.+.
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~ 58 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGES 58 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHH
Confidence 3568999999999752 236677889999999999999999999999999976
No 128
>PRK05665 amidotransferase; Provisional
Probab=97.59 E-value=0.00048 Score=62.06 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=42.8
Q ss_pred CCcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
++||.+||.||... +..+.-..+.+||++++++++|+.+||.|.++||.+
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 47999999999642 224555888999999999999999999999999988
No 129
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00041 Score=59.34 Aligned_cols=87 Identities=23% Similarity=0.283 Sum_probs=62.9
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
|++|+|+-+.--+ +......|+++|+++.+.+. .+++ ..+|
T Consensus 1 m~~i~IIDyg~GN---L~Sv~~Aler~G~~~~vs~d----------------------------------~~~i--~~AD 41 (204)
T COG0118 1 MMMVAIIDYGSGN---LRSVKKALERLGAEVVVSRD----------------------------------PEEI--LKAD 41 (204)
T ss_pred CCEEEEEEcCcch---HHHHHHHHHHcCCeeEEecC----------------------------------HHHH--hhCC
Confidence 4556666555444 77778888888877555432 2222 3689
Q ss_pred EEEEcC-CCC--h-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 281 ALVVPG-GRA--P-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 281 ~viipg-g~~--~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
.||+|| |.. . ..+... .+.+.|++....++|+.+||.|-++|.+.+
T Consensus 42 ~liLPGVGaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGIClGMQlLfe~S 91 (204)
T COG0118 42 KLILPGVGAFGAAMANLRER-GLIEAIKEAVESGKPFLGICLGMQLLFERS 91 (204)
T ss_pred EEEecCCCCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence 999999 442 2 224444 899999999999999999999999999773
No 130
>PRK00784 cobyric acid synthase; Provisional
Probab=97.49 E-value=0.00031 Score=70.30 Aligned_cols=87 Identities=20% Similarity=0.338 Sum_probs=65.1
Q ss_pred CEEEEEecCCCCccchHHHHHHHHh-CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.||+|+-+|...-. .=++.|++ +|+++.++++.. ++ +++|
T Consensus 252 ~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~----------------------------------~l--~~~d 292 (488)
T PRK00784 252 LRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE----------------------------------PL--PDAD 292 (488)
T ss_pred eEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc----------------------------------cc--ccCC
Confidence 48999887743322 44567776 888888887631 22 2689
Q ss_pred EEEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 88 GLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 88 ~iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
+|++|||.... .+..+..+.+.|+++.++|+++.++|.|.++|++.-
T Consensus 293 ~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 293 LVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred EEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 99999997422 234556689999999999999999999999999864
No 131
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=97.49 E-value=0.00039 Score=60.41 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=55.5
Q ss_pred hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccC
Q 016237 216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLAL 295 (392)
Q Consensus 216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~ 295 (392)
-.......|++.|++++++..+. +.++++.-++|.||||||....+
T Consensus 10 ~~~~l~~~l~~~g~~~~~~~~~~-------------------------------~~~~~~~~~~~glii~Gg~~~~~--- 55 (188)
T TIGR00888 10 YTQLIARRLRELGVYSELVPNTT-------------------------------PLEEIREKNPKGIILSGGPSSVY--- 55 (188)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCC-------------------------------CHHHHhhcCCCEEEECCCCCCcC---
Confidence 45567788888898888775531 11111112467999999976422
Q ss_pred ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 296 NENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 296 ~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+.....++++..++++|+.+||.|.++|+.+
T Consensus 56 ~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 56 AENAPRADEKIFELGVPVLGICYGMQLMAKQ 86 (188)
T ss_pred cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence 2235688999999999999999999999987
No 132
>PHA03366 FGAM-synthase; Provisional
Probab=97.48 E-value=0.00064 Score=74.85 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=76.7
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
..||+|+.++|.+ .-......|.++||++..+..+.- .-... .++|+
T Consensus 1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dL------------------------------~~~~~-l~~f~ 1074 (1304)
T PHA03366 1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEEL------------------------------KDGTF-LDEFS 1074 (1304)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeecC------------------------------CCCCc-cccce
Confidence 5799999999998 777788888899999887765411 01111 45799
Q ss_pred EEEEcCCCCh-hh----------ccCChHHHHHHHHHHH-cCCcEEEEeh-HHHHHHHcCCCC
Q 016237 281 ALVVPGGRAP-EY----------LALNENVIALVKDFME-AKKPVASICH-GQQILAAAGVLK 330 (392)
Q Consensus 281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~~-~g~~i~aiC~-G~~~La~aglL~ 330 (392)
.|++|||++. +. +..++.+.+.+++|++ ++..+.+||+ |-++|.+.|+|.
T Consensus 1075 glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366 1075 GLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred EEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence 9999999863 22 2468899999999995 5899999999 999999999994
No 133
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=97.45 E-value=0.00031 Score=60.92 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=58.4
Q ss_pred EEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEc
Q 016237 13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIP 92 (392)
Q Consensus 13 ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiip 92 (392)
||+-|.++... ....+.|++.|.++.++..+.. +++++...+||+||+.
T Consensus 2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL------------------------------TLADIDALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCEEEEc
Confidence 45556666322 2377888889999988765421 1222222368999999
Q ss_pred CCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 93 GG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
||.+... +......++++ +.+++|+.+||-|.++|+.+
T Consensus 51 ~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a 88 (187)
T PRK08007 51 PGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA 88 (187)
T ss_pred CCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 9986322 22334566665 56889999999999999976
No 134
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=97.44 E-value=0.00043 Score=60.03 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=58.3
Q ss_pred EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237 206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP 285 (392)
Q Consensus 206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip 285 (392)
+++.|++... .....+.|++.|.++.++..+.. .++++...+||.||+.
T Consensus 2 il~idn~Dsf-t~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSF-TWNLYQYFCELGADVLVKRNDAL------------------------------TLADIDALKPQKIVIS 50 (187)
T ss_pred EEEEECCCcc-HHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCEEEEc
Confidence 4455555522 23377888888988888755311 1222222368999999
Q ss_pred CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
||++... .......++++ +..++||.+||-|.++|+.+
T Consensus 51 ~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a 88 (187)
T PRK08007 51 PGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA 88 (187)
T ss_pred CCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 9997433 23345566665 56789999999999999988
No 135
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.44 E-value=0.0004 Score=60.71 Aligned_cols=75 Identities=24% Similarity=0.217 Sum_probs=53.7
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc---
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY--- 99 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~--- 99 (392)
.+....+.|+..|.+++++..+ .+ .+++|+|++||+.....
T Consensus 10 n~~~l~~~l~~~g~~v~v~~~~----------------------------------~~--l~~~d~lii~G~~~~~~~~~ 53 (196)
T TIGR01855 10 NLGSVKRALKRVGAEPVVVKDS----------------------------------KE--AELADKLILPGVGAFGAAMA 53 (196)
T ss_pred HHHHHHHHHHHCCCcEEEEcCH----------------------------------HH--hccCCEEEECCCCCHHHHHH
Confidence 6778888999999888887522 11 23699999999543211
Q ss_pred -ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 100 -LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 100 -~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
+.... ...+++++++.+++|.++|.|.++|+++.
T Consensus 54 ~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~~ 88 (196)
T TIGR01855 54 RLRENG-LDLFVELVVRLGKPVLGICLGMQLLFERS 88 (196)
T ss_pred HHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhcc
Confidence 22222 34455888899999999999999999983
No 136
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.44 E-value=0.00045 Score=65.91 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=72.0
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
||++ +.|..-..-+-.-++.|++.|+++.++||-.+. .+ +++.|+|
T Consensus 247 rIAV-A~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~-----------------------------~l----P~~~D~v 292 (451)
T COG1797 247 RIAV-ARDAAFNFYYPENLELLREAGAELVFFSPLADE-----------------------------EL----PPDVDAV 292 (451)
T ss_pred eEEE-EecchhccccHHHHHHHHHCCCEEEEeCCcCCC-----------------------------CC----CCCCCEE
Confidence 4444 455555556777899999999999999985321 11 2358999
Q ss_pred EEcCCCC---hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 283 VVPGGRA---PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 283 iipgg~~---~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+||||+- ...|..++...+.|+++++.|++|-|=|.|-.+|.++
T Consensus 293 YlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~ 339 (451)
T COG1797 293 YLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES 339 (451)
T ss_pred EeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence 9999985 3558999999999999999999999999999999977
No 137
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.41 E-value=0.00035 Score=61.12 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=52.7
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
||+|+=+-.-+ +......|++.|+++.++... +++ .++|.|
T Consensus 2 ~i~iid~g~gn---~~s~~~~l~~~g~~~~~v~~~----------------------------------~~~--~~~d~i 42 (196)
T PRK13170 2 NVVIIDTGCAN---LSSVKFAIERLGYEPVVSRDP----------------------------------DVI--LAADKL 42 (196)
T ss_pred eEEEEeCCCch---HHHHHHHHHHCCCeEEEECCH----------------------------------HHh--CCCCEE
Confidence 57776554333 445566888889888887422 122 257899
Q ss_pred EEcCC-CCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 90 VIPGG-RAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 90 iipGG-~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|+||+ ..... ......+.+.+++ .++||.+||.|.++|+.+
T Consensus 43 IlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 43 FLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER 86 (196)
T ss_pred EECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence 99994 32111 1111234455544 589999999999999987
No 138
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=97.41 E-value=0.00043 Score=60.13 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=55.7
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAM 102 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~ 102 (392)
-+....+.|++.|++++++..+.. .++++.-+||+||+|||.+...
T Consensus 10 ~~~~l~~~l~~~g~~~~~~~~~~~-------------------------------~~~~~~~~~~glii~Gg~~~~~--- 55 (188)
T TIGR00888 10 YTQLIARRLRELGVYSELVPNTTP-------------------------------LEEIREKNPKGIILSGGPSSVY--- 55 (188)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCC-------------------------------HHHHhhcCCCEEEECCCCCCcC---
Confidence 455677889999999988765421 1211111367999999965322
Q ss_pred CHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 103 NDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 103 ~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+.....+++++.++++|+.+||.|.++|+.+
T Consensus 56 ~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 56 AENAPRADEKIFELGVPVLGICYGMQLMAKQ 86 (188)
T ss_pred cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence 2235678899999999999999999999976
No 139
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=97.41 E-value=0.00049 Score=59.96 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=57.4
Q ss_pred EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237 206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP 285 (392)
Q Consensus 206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip 285 (392)
+++.|+.. +=....++.|++.|++++++..+.. .++++...++|.||+.
T Consensus 2 il~id~~d-sf~~nl~~~l~~~~~~~~v~~~~~~------------------------------~~~~~~~~~~~~iils 50 (191)
T PRK06774 2 LLLIDNYD-SFTYNLYQYFCELGTEVMVKRNDEL------------------------------QLTDIEQLAPSHLVIS 50 (191)
T ss_pred EEEEECCC-chHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCeEEEc
Confidence 34444444 1233478888889999988865421 1222222368999999
Q ss_pred CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
||++... .......+++. +++++||.+||.|.++|+.+
T Consensus 51 gGP~~~~--~~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~ 88 (191)
T PRK06774 51 PGPCTPN--EAGISLAVIRH-FADKLPILGVCLGHQALGQA 88 (191)
T ss_pred CCCCChH--hCCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 9986322 22334566654 57789999999999999988
No 140
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.40 E-value=0.00091 Score=60.46 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=36.0
Q ss_pred CCCccEEEEcCCCC-cccc--cCCH-------HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 83 PSKYDGLVIPGGRA-PEYL--AMND-------SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 83 ~~~~D~iiipGG~~-~~~~--~~~~-------~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
...||+|||.||.. +..- ...+ .+.++++...++++||.+||.|.++|+.+
T Consensus 49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a 109 (242)
T PRK07567 49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH 109 (242)
T ss_pred HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence 34799999999963 2211 1122 23345555568999999999999999987
No 141
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.38 E-value=0.00073 Score=59.89 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=57.7
Q ss_pred hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237 217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN 296 (392)
Q Consensus 217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~ 296 (392)
.....+.|++.|+++.++..+... .. ...+. ..+||.|||.||++... ..
T Consensus 13 ~~~~~~~l~~~G~~~~~~~~~~~~------------------------~~---~~~~~-~~~~dgliisGGp~~~~--~~ 62 (214)
T PRK07765 13 VFNLVQYLGQLGVEAEVWRNDDPR------------------------LA---DEAAV-AAQFDGVLLSPGPGTPE--RA 62 (214)
T ss_pred HHHHHHHHHHcCCcEEEEECCCcC------------------------HH---HHHHh-hcCCCEEEECCCCCChh--hc
Confidence 345677888899999888664110 00 11111 23699999999986322 23
Q ss_pred hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 297 ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
....+|++++.++++||.+||.|.++|+.+
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a 92 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGHQAIGVA 92 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence 456689999999999999999999999988
No 142
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=97.37 E-value=0.00043 Score=60.30 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=57.6
Q ss_pred EEecCCCCccchHH-HHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237 13 LLCGDYMEDYEAMV-PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI 91 (392)
Q Consensus 13 ill~~g~~~~e~~~-~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii 91 (392)
||+-|.++ .++. ..+.|++.|.+++++..+.. +++++....+|+||+
T Consensus 2 il~id~~d--sf~~nl~~~l~~~~~~~~v~~~~~~------------------------------~~~~~~~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYD--SFTYNLYQYFCELGTEVMVKRNDEL------------------------------QLTDIEQLAPSHLVI 49 (191)
T ss_pred EEEEECCC--chHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCeEEE
Confidence 34445555 3333 77888899999998876521 122222236899999
Q ss_pred cCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 92 PGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 92 pGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.||.+ +.. ......++++ +++++||.+||.|.++|+.+
T Consensus 50 sgGP~~~~~---~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~ 88 (191)
T PRK06774 50 SPGPCTPNE---AGISLAVIRH-FADKLPILGVCLGHQALGQA 88 (191)
T ss_pred cCCCCChHh---CCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 99975 332 2234455554 57799999999999999987
No 143
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.37 E-value=0.00097 Score=65.98 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=66.7
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
.+|++.-.+-++. -+..=++.|++.|.++..+++..+ . +.+++|+
T Consensus 245 ~~Iava~d~afnF-y~~~~~~~L~~~g~~~~~~~~~~d-----------------------------~-----~l~~~d~ 289 (449)
T TIGR00379 245 VRIAVAQDQAFNF-YYQDNLDALTHNAAELVPFSPLED-----------------------------T-----ELPDVDA 289 (449)
T ss_pred cEEEEEechhhce-eHHHHHHHHHHCCCEEEEECCccC-----------------------------C-----CCCCCCE
Confidence 3566666554442 234556778888888888876311 1 1226899
Q ss_pred EEEcCCCCh---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 282 LVVPGGRAP---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 282 viipgg~~~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
|+||||... ..+..+..+.+.|+++.++|.+|.|+|.|-++|++.
T Consensus 290 l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 290 VYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred EEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 999999852 235667889999999999999999999999999976
No 144
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.0016 Score=56.83 Aligned_cols=55 Identities=33% Similarity=0.466 Sum_probs=44.7
Q ss_pred cCCCCCCcCEEEEcCCCChhhccC--ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 272 ESVDVSGYDALVVPGGRAPEYLAL--NENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 272 ~~~~~~~~D~viipgg~~~~~~~~--~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+..+...+|++||.||+..-+... .+...++|++....+++|.+||.|.++||.+
T Consensus 39 ~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 39 EELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred ccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 333444569999999985434344 7899999999999999999999999999987
No 145
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.34 E-value=0.00014 Score=61.60 Aligned_cols=49 Identities=35% Similarity=0.651 Sum_probs=38.8
Q ss_pred CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCC-CeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~-~~i~aic~G~~~La~a 133 (392)
..|+||||||.++. .+.....+.+-|+++.++| +||.+.|.|..+||+.
T Consensus 33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~ 84 (188)
T PF01174_consen 33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE 84 (188)
T ss_dssp T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence 68999999998742 2566678999999999998 9999999999999974
No 146
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.33 E-value=0.00074 Score=59.85 Aligned_cols=79 Identities=19% Similarity=0.366 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND 104 (392)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~ 104 (392)
....+.|++.|+++.++..+... + + ...+. ..+||+|||.||.+.. .+..
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~------------------------~-~--~~~~~-~~~~dgliisGGp~~~--~~~~ 63 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDPR------------------------L-A--DEAAV-AAQFDGVLLSPGPGTP--ERAG 63 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCcC------------------------H-H--HHHHh-hcCCCEEEECCCCCCh--hhcc
Confidence 34567888899999988765210 0 0 01111 2369999999997522 2234
Q ss_pred HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
...++++++.++++||.+||.|.++|+.+
T Consensus 64 ~~~~~i~~~~~~~~PiLGIC~G~Qlla~a 92 (214)
T PRK07765 64 ASIDMVRACAAAGTPLLGVCLGHQAIGVA 92 (214)
T ss_pred hHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence 56789999999999999999999999976
No 147
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.33 E-value=0.00081 Score=58.39 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237 218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE 297 (392)
Q Consensus 218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~ 297 (392)
....+.|++.|+++.++..+.. .++++...++|.||+.||++... ...
T Consensus 13 ~~~~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iilsgGpg~p~--~~~ 60 (188)
T TIGR00566 13 YNLVQYFCELGAEVVVKRNDSL------------------------------TLQEIEALLPLLIVISPGPCTPN--EAG 60 (188)
T ss_pred HHHHHHHHHcCCceEEEECCCC------------------------------CHHHHHhcCCCEEEEcCCCCChh--hcc
Confidence 3467778888888887765411 11222223589999999987422 223
Q ss_pred HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 298 NVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
...++++++ .+++||.+||.|-++|+.+
T Consensus 61 ~~~~~i~~~-~~~~PvLGIC~G~Qll~~~ 88 (188)
T TIGR00566 61 ISLEAIRHF-AGKLPILGVCLGHQAMGQA 88 (188)
T ss_pred hhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence 347888887 6789999999999999988
No 148
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.31 E-value=0.0013 Score=65.95 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.++|+|+=|-.- .+......|++.|+++.++... .+ ..++|
T Consensus 6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~~----------------------------------~~--l~~~D 46 (538)
T PLN02617 6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQTP----------------------------------ED--ILNAD 46 (538)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECCh----------------------------------hh--hccCC
Confidence 568887755433 4556678888899988766421 12 23799
Q ss_pred EEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 88 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 88 ~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+||+||+..... ...+..+.+.|+++.++++|+.+||.|.++|+++
T Consensus 47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES 95 (538)
T ss_pred EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 999999754321 1223347788999999999999999999999974
No 149
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.30 E-value=0.00092 Score=57.62 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=51.3
Q ss_pred hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCC
Q 016237 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMN 103 (392)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~ 103 (392)
.....+.|++.|.++.++..+.. .++.+..+||+||+|||.+.......
T Consensus 11 ~~~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~~ 59 (181)
T cd01742 11 THLIARRVRELGVYSEILPNTTP-------------------------------LEEIKLKNPKGIILSGGPSSVYEEDA 59 (181)
T ss_pred HHHHHHHHHhcCceEEEecCCCC-------------------------------hhhhcccCCCEEEECCCccccccccc
Confidence 45578889999998888765421 11122347999999999642211112
Q ss_pred HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+.+ .++..+.++|+.+||.|.++|+.+
T Consensus 60 ~~~---~~~~~~~~~PilGIC~G~Qll~~~ 86 (181)
T cd01742 60 PRV---DPEIFELGVPVLGICYGMQLIAKA 86 (181)
T ss_pred chh---hHHHHhcCCCEEEEcHHHHHHHHh
Confidence 233 344455699999999999999985
No 150
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.29 E-value=0.00064 Score=59.61 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=38.2
Q ss_pred CccEEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
++|.||+||+..... ......+.++|+++.++++|+.+||.|.++|+.+
T Consensus 37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 (199)
T ss_pred cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence 689999999643211 1122346788999999999999999999999987
No 151
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.27 E-value=0.0014 Score=71.95 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=76.0
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
..||+|+.++|.+ .-......|..+||++..+..+.-. .+. ..++|+
T Consensus 929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl~--------------------~~~-----------~l~~f~ 975 (1202)
T TIGR01739 929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITELK--------------------KTD-----------FLDTFS 975 (1202)
T ss_pred CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEeccCC--------------------CCC-----------chhheE
Confidence 4579999999998 7778888899999998888654210 010 123789
Q ss_pred EEEEcCCCCh-hh----------ccCChHHHHHHHHHH-HcCCcEEEEeh-HHHHHHHcCCCCC
Q 016237 281 ALVVPGGRAP-EY----------LALNENVIALVKDFM-EAKKPVASICH-GQQILAAAGVLKG 331 (392)
Q Consensus 281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~-~~g~~i~aiC~-G~~~La~aglL~g 331 (392)
.|+++||++. +. +..++.+.+.+++|+ +++.++.+||+ |-++|.+.|+|..
T Consensus 976 glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739 976 GLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred EEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence 9999998752 11 245789999999999 45999999999 9999999999853
No 152
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.27 E-value=0.0017 Score=58.74 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=36.6
Q ss_pred CCCcCEEEEcCCCChhh------ccCChHHH----HHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 276 VSGYDALVVPGGRAPEY------LALNENVI----ALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~------~~~~~~l~----~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.++||.|||.||....+ .+.-..+. ++++...++++||.+||.|.++|+.+
T Consensus 49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a 109 (242)
T PRK07567 49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH 109 (242)
T ss_pred HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence 45799999999975321 11112233 44555558999999999999999988
No 153
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.27 E-value=0.0014 Score=57.86 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=52.1
Q ss_pred hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237 217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN 296 (392)
Q Consensus 217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~ 296 (392)
.....+.|++.|++++++..+- .++++....||.||+.||++... ..
T Consensus 14 ~~nl~~~l~~~g~~~~v~~~~~-------------------------------~~~~l~~~~~~~iIlsgGPg~~~--d~ 60 (208)
T PRK05637 14 VYNLVDAFAVAGYKCTVFRNTV-------------------------------PVEEILAANPDLICLSPGPGHPR--DA 60 (208)
T ss_pred HHHHHHHHHHCCCcEEEEeCCC-------------------------------CHHHHHhcCCCEEEEeCCCCCHH--Hh
Confidence 3457888999999988886531 11222223689999999887432 12
Q ss_pred hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 297 ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
....++++++. .++||.+||.|.++|+.+
T Consensus 61 ~~~~~li~~~~-~~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 61 GNMMALIDRTL-GQIPLLGICLGFQALLEH 89 (208)
T ss_pred hHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence 23346665543 579999999999999988
No 154
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.26 E-value=0.0014 Score=56.54 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=51.0
Q ss_pred hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237 217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN 296 (392)
Q Consensus 217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~ 296 (392)
.....+.|++.|+++.++..+.. .++.+..+||.||+|||.........
T Consensus 11 ~~~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~~ 59 (181)
T cd01742 11 THLIARRVRELGVYSEILPNTTP-------------------------------LEEIKLKNPKGIILSGGPSSVYEEDA 59 (181)
T ss_pred HHHHHHHHHhcCceEEEecCCCC-------------------------------hhhhcccCCCEEEECCCccccccccc
Confidence 44567888888988887765311 11223457999999998763221112
Q ss_pred hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 297 ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..+ .++..+.++|+.+||.|.++|+.+
T Consensus 60 ~~~---~~~~~~~~~PilGIC~G~Qll~~~ 86 (181)
T cd01742 60 PRV---DPEIFELGVPVLGICYGMQLIAKA 86 (181)
T ss_pred chh---hHHHHhcCCCEEEEcHHHHHHHHh
Confidence 223 344455699999999999999986
No 155
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.26 E-value=0.00085 Score=59.44 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=65.1
Q ss_pred CCccEEEEeCCCCCcch-hHHHHHHHHhc-CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccccc-ccCCCC
Q 016237 200 SDKRILFLCGDYMEDYE-VAVPFQSLQAL-ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTAN-FESVDV 276 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e-~~~~~~~~~~~-~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~ 276 (392)
..++++++-.-.....+ .......|++. |++++.+.... +.. .+. .
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~-----------------------------~~~~~~~--l 78 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD-----------------------------TEDPLDA--L 78 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC-----------------------------cccHHHH--H
Confidence 45567777655443223 45577788888 88877665420 111 222 2
Q ss_pred CCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..+|+|++|||.-... ..+...+.+.|++.+++|++++++|.|++++.+.
T Consensus 79 ~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 79 LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 4789999999853211 2233478888999999999999999999999984
No 156
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.24 E-value=0.00054 Score=59.68 Aligned_cols=80 Identities=30% Similarity=0.473 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccC
Q 016237 216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLAL 295 (392)
Q Consensus 216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~ 295 (392)
-.......|++.|.+++++..+.. .....+ ...+||.++|+||.+... .
T Consensus 9 ~~~~l~~~l~~~~~~~~v~~~~~~----------------------------~~~~~~-~~~~~d~iii~Gg~~~~~--d 57 (192)
T PF00117_consen 9 FTHSLVRALRELGIDVEVVRVDSD----------------------------FEEPLE-DLDDYDGIIISGGPGSPY--D 57 (192)
T ss_dssp THHHHHHHHHHTTEEEEEEETTGG----------------------------HHHHHH-HTTTSSEEEEECESSSTT--S
T ss_pred HHHHHHHHHHHCCCeEEEEECCCc----------------------------hhhhhh-hhcCCCEEEECCcCCccc--c
Confidence 355677888999988888876411 000111 245899999999987422 1
Q ss_pred ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 296 NENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 296 ~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.+...++++++.++++|+.+||.|.++|+.+
T Consensus 58 ~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 58 IEGLIELIREARERKIPILGICLGHQILAHA 88 (192)
T ss_dssp HHHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred ccccccccccccccceEEEEEeehhhhhHHh
Confidence 5788899999999999999999999999988
No 157
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.21 E-value=0.0011 Score=58.46 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=58.0
Q ss_pred CEEEEEec-CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 9 RSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 9 ~kI~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
+||+++=+ |+| .....+.|++.|+.++++..+. +++++...+||
T Consensus 2 ~~il~iD~~dsf----~~nl~~~l~~~g~~~~v~~~~~-------------------------------~~~~l~~~~~~ 46 (208)
T PRK05637 2 THVVLIDNHDSF----VYNLVDAFAVAGYKCTVFRNTV-------------------------------PVEEILAANPD 46 (208)
T ss_pred CEEEEEECCcCH----HHHHHHHHHHCCCcEEEEeCCC-------------------------------CHHHHHhcCCC
Confidence 47665543 333 2457788999999998887542 12222223689
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.|||.||.+... +.....+++++.. .++||.+||.|.++|+.+
T Consensus 47 ~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 47 LICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH 89 (208)
T ss_pred EEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence 999988875321 2233456665543 579999999999999987
No 158
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.19 E-value=0.00048 Score=56.46 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=61.8
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+-|+++...|.-..........+.+..|.+.+- +.+-.+-.| ..+.|+
T Consensus 12 ~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~------------------------------~~tVKT~~D--~aq~Da 59 (226)
T KOG3210|consen 12 VVIGVLALQGAFIEHVNHVEKCIVENRYEIKLS------------------------------VMTVKTKND--LAQCDA 59 (226)
T ss_pred eEEeeeehhhHHHHHHHHHHHhhccCcceEEEE------------------------------EEeecCHHH--HhhCCE
Confidence 458888888876555555444444444443321 111112333 347999
Q ss_pred EEEcCCCCcc-c-ccCCHHHHHHHHHHHhCC-CeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPE-Y-LAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~-~-~~~~~~l~~~l~~~~~~~-~~i~aic~G~~~La~a 133 (392)
+|||||.+.. . +.+-..+.+-|.++..++ +++.+.|.|..+|.+.
T Consensus 60 LIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 60 LIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred EEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 9999998743 2 445556889999998887 9999999999888753
No 159
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.003 Score=55.04 Aligned_cols=54 Identities=31% Similarity=0.495 Sum_probs=42.1
Q ss_pred CCCCCCccEEEEcCCCCcccccC--CHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 80 EIDPSKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 80 ~~~~~~~D~iiipGG~~~~~~~~--~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+++..++|+|||.||...-.... .+...++|++....+++|.+||.|.++||.+
T Consensus 40 ~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 40 ELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred cccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 33334569999999973212223 6789999999999999999999999999965
No 160
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.16 E-value=0.0012 Score=57.22 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=55.7
Q ss_pred EecCCCCccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEc
Q 016237 14 LCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIP 92 (392)
Q Consensus 14 ll~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiip 92 (392)
++-|.++ .++ ...+.|++.|+++.++..+.. .++++....+|.|||.
T Consensus 3 l~id~~d--sft~~~~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils 50 (188)
T TIGR00566 3 LMIDNYD--SFTYNLVQYFCELGAEVVVKRNDSL------------------------------TLQEIEALLPLLIVIS 50 (188)
T ss_pred EEEECCc--CHHHHHHHHHHHcCCceEEEECCCC------------------------------CHHHHHhcCCCEEEEc
Confidence 4444444 333 366777788998887765421 1222222258999999
Q ss_pred CCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 93 GG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
||.+... +.....++++++ .+++||.+||.|.++|+.+
T Consensus 51 gGpg~p~--~~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~ 88 (188)
T TIGR00566 51 PGPCTPN--EAGISLEAIRHF-AGKLPILGVCLGHQAMGQA 88 (188)
T ss_pred CCCCChh--hcchhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence 9985321 223346777777 6789999999999999976
No 161
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.15 E-value=0.0017 Score=56.86 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=51.8
Q ss_pred hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChh-h--
Q 016237 216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPE-Y-- 292 (392)
Q Consensus 216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~-~-- 292 (392)
.+....+.|+..|.+++++..+ + +.+++|.||+||+..+. .
T Consensus 10 n~~~l~~~l~~~g~~v~v~~~~----------------------------------~--~l~~~d~lii~G~~~~~~~~~ 53 (196)
T TIGR01855 10 NLGSVKRALKRVGAEPVVVKDS----------------------------------K--EAELADKLILPGVGAFGAAMA 53 (196)
T ss_pred HHHHHHHHHHHCCCcEEEEcCH----------------------------------H--HhccCCEEEECCCCCHHHHHH
Confidence 5777888888888777666421 0 12368999999954321 1
Q ss_pred -ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 293 -LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 293 -~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+.... ...+++++.+.++||.++|.|.++|+.+
T Consensus 54 ~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 54 RLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER 87 (196)
T ss_pred HHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence 22222 3444488889999999999999999998
No 162
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.12 E-value=0.002 Score=56.36 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=51.1
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
+++++-+..-+ +......|++.|++++++... +++ .++|.|
T Consensus 2 ~i~iid~g~gn---~~s~~~~l~~~g~~~~~v~~~----------------------------------~~~--~~~d~i 42 (196)
T PRK13170 2 NVVIIDTGCAN---LSSVKFAIERLGYEPVVSRDP----------------------------------DVI--LAADKL 42 (196)
T ss_pred eEEEEeCCCch---HHHHHHHHHHCCCeEEEECCH----------------------------------HHh--CCCCEE
Confidence 44544443333 555666888888887777321 111 257899
Q ss_pred EEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 283 VVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 283 iipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
|+||...+.. ......+.+.+++ .++||.+||.|.++|+.+
T Consensus 43 IlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 43 FLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER 86 (196)
T ss_pred EECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence 9999433211 1112235555554 489999999999999988
No 163
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.10 E-value=0.0021 Score=62.80 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=63.0
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
+|+|. .|..--.-+..-++.|+++ .++..+||-.. . ..+++|+|
T Consensus 235 ~iavA-~D~AF~FyY~enl~~L~~~-aelv~fSPl~~-----------------------------~-----~lp~~D~l 278 (433)
T PRK13896 235 TVAVA-RDAAFCFRYPATIERLRER-ADVVTFSPVAG-----------------------------D-----PLPDCDGV 278 (433)
T ss_pred eEEEE-EcCccceeCHHHHHHHHhc-CcEEEEcCCCC-----------------------------C-----CCCCCCEE
Confidence 44443 3444444566677888888 89888888421 1 12268999
Q ss_pred EEcCCCCh---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 283 VVPGGRAP---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 283 iipgg~~~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
++|||... ..+..+... +.|+++.++|++|.|+|.|-++|++.
T Consensus 279 ~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 279 YLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred EeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 99999842 225555555 89999999999999999999999986
No 164
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.09 E-value=0.0015 Score=56.59 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=57.3
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+|+=|..-+ +.....+|++.|.++.++... +++ .++|.||
T Consensus 2 i~iidyg~gN---~~s~~~al~~~g~~~~~v~~~----------------------------------~~l--~~~D~lI 42 (192)
T PRK13142 2 IVIVDYGLGN---ISNVKRAIEHLGYEVVVSNTS----------------------------------KII--DQAETII 42 (192)
T ss_pred EEEEEcCCcc---HHHHHHHHHHcCCCEEEEeCH----------------------------------HHh--ccCCEEE
Confidence 6777665554 566667777888888776422 222 2589999
Q ss_pred EcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 91 IPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 91 ipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
+||+-... ...+...+.+.|++ ..++++.+||.|.++|++..
T Consensus 43 lPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 43 LPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred ECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence 99984422 11223346777877 56899999999999999875
No 165
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=97.07 E-value=0.0015 Score=57.00 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=56.5
Q ss_pred EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237 206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP 285 (392)
Q Consensus 206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip 285 (392)
+++.|+... =.....+.|++.|+++.++..+.. .++++...+||.||+.
T Consensus 2 il~idn~ds-ft~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDS-FTFNLVQFLGELGQELVVKRNDEV------------------------------TISDIENMKPDFLMIS 50 (195)
T ss_pred EEEEeCCCc-cHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHhhCCCCEEEEC
Confidence 344444441 233488889999999888864311 1112222368999999
Q ss_pred CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
||++... ........+++ +..++|+.+||-|.++|+.+
T Consensus 51 gGP~~p~--~~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~ 88 (195)
T PRK07649 51 PGPCSPN--EAGISMEVIRY-FAGKIPIFGVCLGHQSIAQV 88 (195)
T ss_pred CCCCChH--hCCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 9987422 12234555554 35789999999999999988
No 166
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.06 E-value=0.0014 Score=56.96 Aligned_cols=50 Identities=30% Similarity=0.482 Sum_probs=38.2
Q ss_pred CCccEEEEcCCCCccc---------------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~---------------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
..+|.||+|||.+... ...+....++++++.++++||.+||.|.++|+.+
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA 116 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence 3699999999964211 1112244788999999999999999999999875
No 167
>CHL00101 trpG anthranilate synthase component 2
Probab=97.05 E-value=0.0014 Score=56.92 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237 218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE 297 (392)
Q Consensus 218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~ 297 (392)
....+.|++.|.++.++..+.. .+++....++|.|||.||.+... +.
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dgiiisgGpg~~~---~~ 59 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEI------------------------------DLSKIKNLNIRHIIISPGPGHPR---DS 59 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCC------------------------------CHHHHhhCCCCEEEECCCCCChH---HC
Confidence 4477888888888877754311 11122223689999999987422 12
Q ss_pred HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 298 NVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.+...+.+.+++++|+.+||-|.++|+.+
T Consensus 60 ~~~~~i~~~~~~~~PiLGIClG~Qlla~~ 88 (190)
T CHL00101 60 GISLDVISSYAPYIPILGVCLGHQSIGYL 88 (190)
T ss_pred cchHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence 23344445677899999999999999987
No 168
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.05 E-value=0.00087 Score=58.35 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=58.9
Q ss_pred hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCC
Q 016237 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMN 103 (392)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~ 103 (392)
.......|++.|.+++++...... ....+ +..+||+|+|+||.+... +.
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~~---------------------------~~~~~--~~~~~d~iii~Gg~~~~~--d~ 58 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSDF---------------------------EEPLE--DLDDYDGIIISGGPGSPY--DI 58 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGGH---------------------------HHHHH--HTTTSSEEEEECESSSTT--SH
T ss_pred HHHHHHHHHHCCCeEEEEECCCch---------------------------hhhhh--hhcCCCEEEECCcCCccc--cc
Confidence 345678888999999988765210 00011 234899999999975322 25
Q ss_pred HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
....++++++.++++|+.+||.|.++|+.+
T Consensus 59 ~~~~~~i~~~~~~~~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 59 EGLIELIREARERKIPILGICLGHQILAHA 88 (192)
T ss_dssp HHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred cccccccccccccceEEEEEeehhhhhHHh
Confidence 788899999999999999999999999976
No 169
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.04 E-value=0.0031 Score=61.69 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=63.9
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.||+|.--.-|+. =+-.-++.|+++ .++..+||-.+ +++ +++|+
T Consensus 234 ~~iavA~D~AF~F-yY~enl~~L~~~-aelv~fSPl~~--------------------------------~~l--p~~D~ 277 (433)
T PRK13896 234 PTVAVARDAAFCF-RYPATIERLRER-ADVVTFSPVAG--------------------------------DPL--PDCDG 277 (433)
T ss_pred CeEEEEEcCccce-eCHHHHHHHHhc-CcEEEEcCCCC--------------------------------CCC--CCCCE
Confidence 4788776554543 344456778888 89999988421 112 26899
Q ss_pred EEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|++|||... ..+..+..+ +-|+++.++|++|.++|.|-++|++.
T Consensus 278 l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 278 VYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred EEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 999999742 235555555 88999999999999999999999975
No 170
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.04 E-value=0.0029 Score=54.71 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237 217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN 296 (392)
Q Consensus 217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~ 296 (392)
.....+.|++.|+++.++..+... .... +..+||.||+.||.+... +
T Consensus 11 ~~~~~~~l~~~G~~~~~~~~~~~~----------------------------~~~~--~~~~~dgvil~gG~~~~~---~ 57 (184)
T cd01743 11 TYNLVQYLRELGAEVVVVRNDEIT----------------------------LEEL--ELLNPDAIVISPGPGHPE---D 57 (184)
T ss_pred HHHHHHHHHHcCCceEEEeCCCCC----------------------------HHHH--hhcCCCEEEECCCCCCcc---c
Confidence 445678888999999888775221 0011 224699999988776421 2
Q ss_pred hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 297 ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
......+++...+++|+.+||.|.++|+.+
T Consensus 58 ~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~ 87 (184)
T cd01743 58 AGISLEIIRALAGKVPILGVCLGHQAIAEA 87 (184)
T ss_pred chhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence 224556666677889999999999999988
No 171
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.04 E-value=0.0043 Score=62.30 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=60.7
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
.+++.++=+-.- .+......|++.|+++.++.. .++ ..++|
T Consensus 6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~----------------------------------~~~--l~~~D 46 (538)
T PLN02617 6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQT----------------------------------PED--ILNAD 46 (538)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECC----------------------------------hhh--hccCC
Confidence 455665554433 466678888888888755532 011 24789
Q ss_pred EEEEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 281 ALVVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 281 ~viipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.||+||+..+.. ......+.+.|+++.+.++|+.+||.|.++|+.+
T Consensus 47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES 95 (538)
T ss_pred EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 999999655322 1223357888999999999999999999999975
No 172
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.04 E-value=0.002 Score=55.98 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=54.5
Q ss_pred chhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhcc
Q 016237 215 YEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLA 294 (392)
Q Consensus 215 ~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~ 294 (392)
+-.....+.|++.|++++++..+... ...++. .++|.||+.||.+...
T Consensus 10 ~f~~~i~~~l~~~g~~~~v~~~~~~~---------------------------~~~~~~---~~~dglIlsgGpg~~~-- 57 (189)
T PRK05670 10 SFTYNLVQYLGELGAEVVVYRNDEIT---------------------------LEEIEA---LNPDAIVLSPGPGTPA-- 57 (189)
T ss_pred chHHHHHHHHHHCCCcEEEEECCCCC---------------------------HHHHHh---CCCCEEEEcCCCCChH--
Confidence 34556788889999999888764210 001222 2489999999886322
Q ss_pred CChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 295 LNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 295 ~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
......++++++ .+++|+.+||.|.++|+.+
T Consensus 58 d~~~~~~~l~~~-~~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 58 EAGISLELIREF-AGKVPILGVCLGHQAIGEA 88 (189)
T ss_pred HcchHHHHHHHh-cCCCCEEEECHHHHHHHHH
Confidence 123456677764 5779999999999999988
No 173
>PRK13566 anthranilate synthase; Provisional
Probab=97.03 E-value=0.0028 Score=65.96 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=66.6
Q ss_pred CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
.++||+|+=+.. .-.....+.|++.|++|.++...... ..++ ..+|
T Consensus 525 ~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~----------------------------~~~~---~~~~ 570 (720)
T PRK13566 525 EGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAE----------------------------EMLD---RVNP 570 (720)
T ss_pred CCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCCh----------------------------hHhh---hcCC
Confidence 357888777652 34667888999999999998765310 0111 2368
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|.|||.||.+.. .+..+..+++++.++++||.+||.|.++|+.+
T Consensus 571 DgVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a 614 (720)
T PRK13566 571 DLVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA 614 (720)
T ss_pred CEEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence 999998876532 22347899999999999999999999999987
No 174
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.01 E-value=0.0017 Score=57.54 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=64.2
Q ss_pred CCEEEEEecCCCCccc-hHHHHHHHHhC-CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 8 KRSVLLLCGDYMEDYE-AMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e-~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
.+||+++-.-.....| .......|.+. |+++..+..... ....+. ..+
T Consensus 31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~----------------------------~~~~~~--l~~ 80 (212)
T cd03146 31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDT----------------------------EDPLDA--LLE 80 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCc----------------------------ccHHHH--Hhc
Confidence 4678888765443333 45566777778 877766543210 001222 237
Q ss_pred ccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 86 YDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 86 ~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+|+|++|||.-.. ...+...+.+.|++.++++++++++|.|+.++.+.
T Consensus 81 ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 81 ADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred CCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 9999999985321 12233468889999999999999999999999984
No 175
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=97.00 E-value=0.0026 Score=55.44 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=56.8
Q ss_pred EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237 206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP 285 (392)
Q Consensus 206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip 285 (392)
|++.|+.... .....+.|++.|++++++..+... .. .+.+ .++|.+++.
T Consensus 2 il~id~~dsf-t~~~~~~l~~~g~~~~~~~~~~~~------------------------~~---~~~~---~~~~~iils 50 (193)
T PRK08857 2 LLMIDNYDSF-TYNLYQYFCELGAQVKVVRNDEID------------------------ID---GIEA---LNPTHLVIS 50 (193)
T ss_pred EEEEECCCCc-HHHHHHHHHHCCCcEEEEECCCCC------------------------HH---HHhh---CCCCEEEEe
Confidence 4444544422 233788899999999888664110 00 1222 247899999
Q ss_pred CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
||++... .+.....++++ .++++|+.+||.|.++|+.+
T Consensus 51 gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a 88 (193)
T PRK08857 51 PGPCTPN--EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV 88 (193)
T ss_pred CCCCChH--HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 9875322 23334567765 57899999999999999988
No 176
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.00 E-value=0.0022 Score=55.69 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=53.3
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCC-ccccc
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLA 101 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~-~~~~~ 101 (392)
=.....+.|++.|+++.++..+... ...+++ .++|+||+.||.+ +..
T Consensus 11 f~~~i~~~l~~~g~~~~v~~~~~~~---------------------------~~~~~~---~~~dglIlsgGpg~~~d-- 58 (189)
T PRK05670 11 FTYNLVQYLGELGAEVVVYRNDEIT---------------------------LEEIEA---LNPDAIVLSPGPGTPAE-- 58 (189)
T ss_pred hHHHHHHHHHHCCCcEEEEECCCCC---------------------------HHHHHh---CCCCEEEEcCCCCChHH--
Confidence 4456678888899999998765210 001122 2489999998875 322
Q ss_pred CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
......++++ ..+++|+.+||-|.++|+.+
T Consensus 59 -~~~~~~~l~~-~~~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 59 -AGISLELIRE-FAGKVPILGVCLGHQAIGEA 88 (189)
T ss_pred -cchHHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 2345667776 46789999999999999977
No 177
>CHL00101 trpG anthranilate synthase component 2
Probab=97.00 E-value=0.0018 Score=56.35 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND 104 (392)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~ 104 (392)
....+.|++.|.++.++..+.. .+.++...++|+|||.||.+... +.
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dgiiisgGpg~~~--~~- 59 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEI------------------------------DLSKIKNLNIRHIIISPGPGHPR--DS- 59 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCC------------------------------CHHHHhhCCCCEEEECCCCCChH--HC-
Confidence 4477888899988887765421 12222223689999999976321 11
Q ss_pred HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+...+.+.+++++|+.+||-|.++|+.+
T Consensus 60 ~~~~~i~~~~~~~~PiLGIClG~Qlla~~ 88 (190)
T CHL00101 60 GISLDVISSYAPYIPILGVCLGHQSIGYL 88 (190)
T ss_pred cchHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence 23334445677899999999999999985
No 178
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.99 E-value=0.0021 Score=61.26 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237 219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN 298 (392)
Q Consensus 219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~ 298 (392)
...+.|.+.|+++.++..+. .++++...++|.|+++||++... ..+.
T Consensus 190 nivr~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~DGIvLSgGPgdp~--~~~~ 236 (360)
T PRK12564 190 NILRELAERGCRVTVVPATT-------------------------------TAEEILALNPDGVFLSNGPGDPA--ALDY 236 (360)
T ss_pred HHHHHHHHCCCEEEEEeCCC-------------------------------CHHHHHhcCCCEEEEeCCCCChH--HHHH
Confidence 47788888899988886541 11222122689999999986322 2367
Q ss_pred HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 299 VIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 299 l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..++++++.++++||.+||.|.++|+.+
T Consensus 237 ~~~~i~~~~~~~~PilGIClG~QlLa~a 264 (360)
T PRK12564 237 AIEMIRELLEKKIPIFGICLGHQLLALA 264 (360)
T ss_pred HHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 7899999998899999999999999987
No 179
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=96.96 E-value=0.0022 Score=56.01 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=56.2
Q ss_pred EEecCCCCccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237 13 LLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI 91 (392)
Q Consensus 13 ill~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii 91 (392)
||+-|.++ .++ ...+.|++.|+++.++..+.. .+++++..+||+||+
T Consensus 2 il~idn~d--sft~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYD--SFTFNLVQFLGELGQELVVKRNDEV------------------------------TISDIENMKPDFLMI 49 (195)
T ss_pred EEEEeCCC--ccHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHhhCCCCEEEE
Confidence 34445555 333 377889999999988875421 112222236899999
Q ss_pred cCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 92 PGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 92 pGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.||.+ +.. .......+++ +.+++|+.+||-|.++|+.+
T Consensus 50 sgGP~~p~~---~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~ 88 (195)
T PRK07649 50 SPGPCSPNE---AGISMEVIRY-FAGKIPIFGVCLGHQSIAQV 88 (195)
T ss_pred CCCCCChHh---CCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 99975 332 2224455554 45789999999999999975
No 180
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.96 E-value=0.00082 Score=58.95 Aligned_cols=49 Identities=31% Similarity=0.504 Sum_probs=38.7
Q ss_pred CcCEEEEcCCCChhh-c--cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGRAPEY-L--ALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~~~~~-~--~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
++|.||+||+..+.. . .....+.++|+++.++++|+.++|.|.++|+.+
T Consensus 37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 (199)
T ss_pred cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence 689999999654321 1 122357789999999999999999999999997
No 181
>PRK00784 cobyric acid synthase; Provisional
Probab=96.95 E-value=0.003 Score=63.26 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=41.3
Q ss_pred CcCEEEEcCCCChh---hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGRAPE---YLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~~~~---~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
++|.||+|||.... .+..+..+.+.|+++.++|++|.++|.|-++|++.
T Consensus 290 ~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 290 DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 68999999998532 23456668999999999999999999999999985
No 182
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.95 E-value=0.0018 Score=61.70 Aligned_cols=87 Identities=24% Similarity=0.280 Sum_probs=61.7
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||+++=+ |+. ......|.+.|.++.++..+. +++++...++|+
T Consensus 178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~DG 221 (360)
T PRK12564 178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT-------------------------------TAEEILALNPDG 221 (360)
T ss_pred CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHHHhcCCCE
Confidence 46666544 332 357778888899888876542 122222226999
Q ss_pred EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|+++||.+-. .+.....++++++.++++||.+||.|.++|+.+
T Consensus 222 IvLSgGPgdp--~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a 264 (360)
T PRK12564 222 VFLSNGPGDP--AALDYAIEMIRELLEKKIPIFGICLGHQLLALA 264 (360)
T ss_pred EEEeCCCCCh--HHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 9999997522 123677899999998899999999999999865
No 183
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.95 E-value=0.0022 Score=56.36 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=51.3
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc---
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY--- 99 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~--- 99 (392)
-+....+.|++.|+++.++... +++ ..+|.||+||+..+..
T Consensus 11 n~~~v~~~l~~~g~~~~~~~~~----------------------------------~~l--~~~d~lilPG~g~~~~~~~ 54 (201)
T PRK13152 11 NLNSVAKAFEKIGAINFIAKNP----------------------------------KDL--QKADKLLLPGVGSFKEAMK 54 (201)
T ss_pred cHHHHHHHHHHCCCeEEEECCH----------------------------------HHH--cCCCEEEECCCCchHHHHH
Confidence 4566778888888887775422 112 2589999999865322
Q ss_pred ccCCHHHHHHHHHH-HhCCCeEEEEchhhHHhhcCc
Q 016237 100 LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 100 ~~~~~~l~~~l~~~-~~~~~~i~aic~G~~~La~ag 134 (392)
......+...|++. +++++|+.+||.|.++|+.++
T Consensus 55 ~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~ 90 (201)
T PRK13152 55 NLKELGFIEALKEQVLVQKKPILGICLGMQLFLERG 90 (201)
T ss_pred HHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcc
Confidence 11111234555554 588999999999999999873
No 184
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.95 E-value=0.0022 Score=57.31 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCEEEEEecCCC--Cccc-hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237 8 KRSVLLLCGDYM--EDYE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS 84 (392)
Q Consensus 8 ~~kI~ill~~g~--~~~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 84 (392)
.+||+++-+-.. +..+ +....+.|++.|+++..+..... ..+. ..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d------------------------------~~~~--l~ 78 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD------------------------------PVAA--IE 78 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh------------------------------hHHH--Hh
Confidence 467888776331 1122 34466777788887665532210 0111 23
Q ss_pred CccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237 85 KYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135 (392)
Q Consensus 85 ~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl 135 (392)
+.|+|+|+||..... ......+.+.|++++++|+++++.|.|+.+++....
T Consensus 79 ~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 79 NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 789999999975322 344556888999999999999999999999887543
No 185
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=96.93 E-value=0.00079 Score=56.55 Aligned_cols=50 Identities=28% Similarity=0.575 Sum_probs=43.6
Q ss_pred CCcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
++.|.+|||||-.. ..+.....+.+-|+++..+|+|+.+.|+|..+||+-
T Consensus 37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 36899999999863 337778889999999999999999999999999963
No 186
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=96.92 E-value=0.0039 Score=64.76 Aligned_cols=89 Identities=21% Similarity=0.220 Sum_probs=64.4
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
++||+|+=+. ........+.|++.|+++.++..... ...++ ..+||
T Consensus 516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~----------------------------~~~~~---~~~~D 561 (717)
T TIGR01815 516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA----------------------------EAAFD---ERRPD 561 (717)
T ss_pred CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC----------------------------hhhhh---hcCCC
Confidence 5788888643 23466788999999999988764311 00011 23699
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.|||.||.+... +....+++++.+++++|+.+||.|.++|+.+
T Consensus 562 gLILsgGPGsp~---d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 562 LVVLSPGPGRPA---DFDVAGTIDAALARGLPVFGVCLGLQGMVEA 604 (717)
T ss_pred EEEEcCCCCCch---hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence 999988765321 2345778899999999999999999999987
No 187
>PRK13566 anthranilate synthase; Provisional
Probab=96.91 E-value=0.0054 Score=63.86 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=65.0
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
.++|+++-+.. .-.....+.|++.|+++.++...... ..++ ..++|
T Consensus 526 g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~----------------------------~~~~---~~~~D 571 (720)
T PRK13566 526 GKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAE----------------------------EMLD---RVNPD 571 (720)
T ss_pred CCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCCh----------------------------hHhh---hcCCC
Confidence 45665555442 34677888999999999988764210 0111 23689
Q ss_pred EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.||+.||.+.. .+..+.++++++.++++||.+||.|.++|+.+
T Consensus 572 gVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a 614 (720)
T PRK13566 572 LVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA 614 (720)
T ss_pred EEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence 99998887642 23457899999999999999999999999988
No 188
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=96.91 E-value=0.0027 Score=55.32 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=56.2
Q ss_pred EEecCCCCccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237 13 LLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI 91 (392)
Q Consensus 13 ill~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii 91 (392)
|++-|.++ .++ ...+.|++.|+.++++..+... +.++...++|+|++
T Consensus 2 il~id~~d--sft~~~~~~l~~~g~~~~~~~~~~~~------------------------------~~~~~~~~~~~iil 49 (193)
T PRK08857 2 LLMIDNYD--SFTYNLYQYFCELGAQVKVVRNDEID------------------------------IDGIEALNPTHLVI 49 (193)
T ss_pred EEEEECCC--CcHHHHHHHHHHCCCcEEEEECCCCC------------------------------HHHHhhCCCCEEEE
Confidence 34445555 333 3778889999999998765210 11111125889999
Q ss_pred cCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 92 PGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 92 pGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
-||.+ +. ++.....++++ .++++|+.+||.|.++|+.+
T Consensus 50 sgGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a 88 (193)
T PRK08857 50 SPGPCTPN---EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV 88 (193)
T ss_pred eCCCCChH---HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 99864 32 22334566665 57899999999999999975
No 189
>PLN02335 anthranilate synthase
Probab=96.90 E-value=0.0033 Score=56.05 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=58.1
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||+|+ |..+ .-...+.+.|++.|++++++..+.. +++++....||+
T Consensus 19 ~~ilvi--D~~d-sft~~i~~~L~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~d~ 65 (222)
T PLN02335 19 GPIIVI--DNYD-SFTYNLCQYMGELGCHFEVYRNDEL------------------------------TVEELKRKNPRG 65 (222)
T ss_pred CcEEEE--ECCC-CHHHHHHHHHHHCCCcEEEEECCCC------------------------------CHHHHHhcCCCE
Confidence 578877 4322 2345678889999999999865421 112112235899
Q ss_pred EEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|||.||.+ +.. .....+++++ ....+||.+||.|.++|+.+
T Consensus 66 iVisgGPg~p~d---~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a 107 (222)
T PLN02335 66 VLISPGPGTPQD---SGISLQTVLE-LGPLVPLFGVCMGLQCIGEA 107 (222)
T ss_pred EEEcCCCCChhh---ccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence 99999976 432 1223455544 45679999999999999964
No 190
>PRK00758 GMP synthase subunit A; Validated
Probab=96.90 E-value=0.0026 Score=55.05 Aligned_cols=69 Identities=25% Similarity=0.441 Sum_probs=47.9
Q ss_pred HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc-cEEEEcCCCCcccccCCH
Q 016237 26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY-DGLVIPGGRAPEYLAMND 104 (392)
Q Consensus 26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-D~iiipGG~~~~~~~~~~ 104 (392)
...+.|++.|.++.++..+. ..+++ .++ |+|+++||..... ..
T Consensus 14 ~i~~~l~~~g~~~~~~~~~~-------------------------------~~~~l--~~~~dgivi~Gg~~~~~---~~ 57 (184)
T PRK00758 14 LIHRTLRYLGVDAKIIPNTT-------------------------------PVEEI--KAFEDGLILSGGPDIER---AG 57 (184)
T ss_pred HHHHHHHHcCCcEEEEECCC-------------------------------CHHHH--hhcCCEEEECCCCChhh---cc
Confidence 35678888898877765432 11222 246 9999999974322 23
Q ss_pred HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+.+|++ +.++||.+||.|.++|+.+
T Consensus 58 ~~~~~l~---~~~~PilGIC~G~Q~L~~a 83 (184)
T PRK00758 58 NCPEYLK---ELDVPILGICLGHQLIAKA 83 (184)
T ss_pred ccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence 4566665 4589999999999999987
No 191
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.90 E-value=0.0017 Score=50.99 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=58.1
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
+|+|.--+|.....+......|+..- +++.++.+. + . +..+. .++|.|
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~------------------I--------~-~~~~~----~~ad~l 48 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE------------------L--------A-VGPWE----SKTALL 48 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH------------------H--------h-cCchh----hCCCEE
Confidence 46777778888777777777777643 444444321 0 0 11112 379999
Q ss_pred EEcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHh
Q 016237 90 VIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130 (392)
Q Consensus 90 iipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~L 130 (392)
|+|||... +.-..... .+.|+++.++++++.+||.|+.+-
T Consensus 49 VlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 49 VVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred EECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 99998632 22122233 788888889999999999999765
No 192
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=96.90 E-value=0.0049 Score=59.13 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=62.1
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.+||+++=+ |+. ..+...|++.|+++.++..+. +.+++...++|
T Consensus 192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~d 235 (382)
T CHL00197 192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS-------------------------------PYQDILSYQPD 235 (382)
T ss_pred CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC-------------------------------CHHHHhccCCC
Confidence 357777655 444 347888889999998885431 12222223689
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+|+++||.+-.. ......+.++++.+.+.||.+||.|-++|+.+
T Consensus 236 gIilSgGPg~p~--~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a 279 (382)
T CHL00197 236 GILLSNGPGDPS--AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA 279 (382)
T ss_pred EEEEcCCCCChh--HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence 999999976321 23456777888877789999999999999976
No 193
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=96.89 E-value=0.0037 Score=54.01 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND 104 (392)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~ 104 (392)
....+.|++.|++++++..+..+ ..+.+ ..+||+||+.||.+... ++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~----------------------------~~~~~--~~~~dgvil~gG~~~~~--~~- 58 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEIT----------------------------LEELE--LLNPDAIVISPGPGHPE--DA- 58 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCC----------------------------HHHHh--hcCCCEEEECCCCCCcc--cc-
Confidence 34557888899999998875321 00112 24799999988765321 12
Q ss_pred HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 105 SVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.....+++...+++|+.+||.|.++|+.+
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~ 87 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEA 87 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence 24455556667889999999999999986
No 194
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.86 E-value=0.003 Score=55.70 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=59.4
Q ss_pred EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV 90 (392)
Q Consensus 11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii 90 (392)
|+|+=|-.- .+......|+..++++.+++.. +++ .++|.||
T Consensus 2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~~----------------------------------~~l--~~~d~iI 42 (210)
T PRK14004 2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSDP----------------------------------ETI--ENSKALI 42 (210)
T ss_pred EEEEECCCc---hHHHHHHHHHHcCCeEEEECCH----------------------------------HHh--ccCCEEE
Confidence 555544322 5677778888888877665332 222 2789999
Q ss_pred EcCCCCcc----cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 91 IPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 91 ipGG~~~~----~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+||+.... .+. ...+.++|+++.++++++.+||.|.++|+++
T Consensus 43 lPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 43 LPGDGHFDKAMENLN-STGLRSTIDKHVESGKPLFGICIGFQILFES 88 (210)
T ss_pred ECCCCchHHHHHHHH-HcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence 99986321 132 3368899999999999999999999999986
No 195
>PLN02335 anthranilate synthase
Probab=96.84 E-value=0.0054 Score=54.69 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=57.5
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
.++|+++ |. .+.-...+.+.|++.|++++++..+.. .+++....++|
T Consensus 18 ~~~ilvi--D~-~dsft~~i~~~L~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~d 64 (222)
T PLN02335 18 NGPIIVI--DN-YDSFTYNLCQYMGELGCHFEVYRNDEL------------------------------TVEELKRKNPR 64 (222)
T ss_pred cCcEEEE--EC-CCCHHHHHHHHHHHCCCcEEEEECCCC------------------------------CHHHHHhcCCC
Confidence 3455555 32 222345578888899999998854311 11111123689
Q ss_pred EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.|||.||++... ......+++++ ....+||.+||.|.++|+.+
T Consensus 65 ~iVisgGPg~p~--d~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a 107 (222)
T PLN02335 65 GVLISPGPGTPQ--DSGISLQTVLE-LGPLVPLFGVCMGLQCIGEA 107 (222)
T ss_pred EEEEcCCCCChh--hccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence 999999988433 11233555554 35678999999999999987
No 196
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.82 E-value=0.0034 Score=49.29 Aligned_cols=45 Identities=27% Similarity=0.379 Sum_probs=34.8
Q ss_pred CCcCEEEEcCCCChh---hccCChHHHHHHHHHHHcCCcEEEEehHHHHH
Q 016237 277 SGYDALVVPGGRAPE---YLALNENVIALVKDFMEAKKPVASICHGQQIL 323 (392)
Q Consensus 277 ~~~D~viipgg~~~~---~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~L 323 (392)
.++|.||+|||.... .+... . .+.|+++.++|+++.+||.|+.+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~-g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGK-G-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhh-C-cHHHHHHHHCCCcEEEEecCccce
Confidence 378999999976432 23332 3 888999889999999999998755
No 197
>PRK00758 GMP synthase subunit A; Validated
Probab=96.81 E-value=0.0055 Score=52.96 Aligned_cols=43 Identities=35% Similarity=0.630 Sum_probs=33.2
Q ss_pred Cc-CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GY-DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~-D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
++ |.||++||.... ....+.+|++ +.++||.+||.|.++|+.+
T Consensus 40 ~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a 83 (184)
T PRK00758 40 AFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA 83 (184)
T ss_pred hcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence 45 999999987432 2334556665 4589999999999999988
No 198
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.80 E-value=0.002 Score=55.99 Aligned_cols=50 Identities=30% Similarity=0.490 Sum_probs=39.0
Q ss_pred CCcCEEEEcCCCChhh---------------ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPEY---------------LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~~---------------~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..+|.||+|||..... ...+....++++++.+.++||.++|.|.++|+.+
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA 116 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence 3689999999975211 0112345789999999999999999999999987
No 199
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.77 E-value=0.0093 Score=50.86 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=65.8
Q ss_pred EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237 206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP 285 (392)
Q Consensus 206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip 285 (392)
+++.|++.. =...+++.|++.|.++.++-.+. .+.++++..++|.|+|.
T Consensus 4 IL~IDNyDS-FtyNLv~yl~~lg~~v~V~rnd~------------------------------~~~~~~~~~~pd~iviS 52 (191)
T COG0512 4 ILLIDNYDS-FTYNLVQYLRELGAEVTVVRNDD------------------------------ISLELIEALKPDAIVIS 52 (191)
T ss_pred EEEEECccc-hHHHHHHHHHHcCCceEEEECCc------------------------------cCHHHHhhcCCCEEEEc
Confidence 344444442 23457788888887777774430 11123333468999998
Q ss_pred CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc---------CCCCCceee
Q 016237 286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA---------GVLKGKKCT 335 (392)
Q Consensus 286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a---------glL~g~~~T 335 (392)
-|+|... +.....+.|+++ ....||.+||.|-+.++++ -+.+||.-.
T Consensus 53 PGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~ 108 (191)
T COG0512 53 PGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSI 108 (191)
T ss_pred CCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeee
Confidence 8887433 456688899988 6678999999999999988 267787754
No 200
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.73 E-value=0.011 Score=52.79 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHhcCCcCCCCccEEEEeCCCC-C-cch-hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCcc
Q 016237 180 EGHPEFIRLFLKALGGTITGSDKRILFLCGDYM-E-DYE-VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQT 256 (392)
Q Consensus 180 ~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~-~-~~e-~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~ 256 (392)
.+.++-....+..+.+ ..++|+++-+-.. . ..+ +....+.|++.|++++.+-...
T Consensus 14 ~~~l~~~~~~~~~~~~----~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~------------------ 71 (233)
T PRK05282 14 TGYLEHALPLIAELLA----GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA------------------ 71 (233)
T ss_pred CchHHHHHHHHHHHHc----CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch------------------
Confidence 4555666666665543 3456777765331 1 112 3447778888898876653210
Q ss_pred ccCCCCCcccccccccCCCCCCcCEEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 257 YSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 257 ~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
+ ..+ ...+.|+|+|+||.... .......+.+.|++++++|+++++.|.|+.+++...
T Consensus 72 -----------d-~~~--~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 72 -----------D-PVA--AIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred -----------h-hHH--HHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 0 011 12468999999997532 234566788899999999999999999999988753
No 201
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=96.72 E-value=0.009 Score=62.15 Aligned_cols=89 Identities=22% Similarity=0.273 Sum_probs=63.3
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
.++|+++-+. +.......+.|++.|+++.++..... ...+ +..++|
T Consensus 516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~----------------------------~~~~---~~~~~D 561 (717)
T TIGR01815 516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA----------------------------EAAF---DERRPD 561 (717)
T ss_pred CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC----------------------------hhhh---hhcCCC
Confidence 4555555443 33467788999999999887754310 0001 123689
Q ss_pred EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.||+.||.+.. .+....++|++..+.++|+.+||.|.++|+.+
T Consensus 562 gLILsgGPGsp---~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 562 LVVLSPGPGRP---ADFDVAGTIDAALARGLPVFGVCLGLQGMVEA 604 (717)
T ss_pred EEEEcCCCCCc---hhcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence 99998887742 23456789999999999999999999999998
No 202
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.72 E-value=0.012 Score=51.59 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=35.4
Q ss_pred CcCEEEEcCCCChhh----ccCChHHHHHHHHH-HHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGRAPEY----LALNENVIALVKDF-MEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~~~~~----~~~~~~l~~~l~~~-~~~g~~i~aiC~G~~~La~a 326 (392)
++|.||+||+..+.. +... .+...|+++ +++++||.+||.|.++|+.+
T Consensus 37 ~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 37 KADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred CCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 589999999765322 2222 245556554 58899999999999999987
No 203
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.65 E-value=0.0078 Score=52.12 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=55.3
Q ss_pred EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237 204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV 283 (392)
Q Consensus 204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi 283 (392)
+.|+-+..-+ +......|++.|.++.++... +++ .++|.||
T Consensus 2 i~iidyg~gN---~~s~~~al~~~g~~~~~v~~~----------------------------------~~l--~~~D~lI 42 (192)
T PRK13142 2 IVIVDYGLGN---ISNVKRAIEHLGYEVVVSNTS----------------------------------KII--DQAETII 42 (192)
T ss_pred EEEEEcCCcc---HHHHHHHHHHcCCCEEEEeCH----------------------------------HHh--ccCCEEE
Confidence 4555454444 667777788888776665321 122 3589999
Q ss_pred EcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 284 VPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 284 ipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
+||+..+.. ......+.+.|++ ..++|+.+||.|-++|++..
T Consensus 43 lPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 43 LPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred ECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence 999754211 1223346778887 57899999999999999773
No 204
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.64 E-value=0.003 Score=62.42 Aligned_cols=44 Identities=39% Similarity=0.643 Sum_probs=33.0
Q ss_pred CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
++|+||+|||.... .+ ...+.+.|+++ +++|.+||.|-++|++.
T Consensus 36 ~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 36 DLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred cCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 79999999985221 12 24455666555 99999999999999976
No 205
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=96.63 E-value=0.001 Score=56.51 Aligned_cols=49 Identities=31% Similarity=0.617 Sum_probs=38.9
Q ss_pred CcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcC-CcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGRAP--EYLALNENVIALVKDFMEAK-KPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g-~~i~aiC~G~~~La~a 326 (392)
+.|.+|||||-.. ..+.....+.+.||++..+| +||-+.|+|..+||+.
T Consensus 33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~ 84 (188)
T PF01174_consen 33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE 84 (188)
T ss_dssp T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence 6899999999863 23566779999999999998 9999999999999974
No 206
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=96.59 E-value=0.0074 Score=57.53 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=59.5
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||+++=+ |+. ......|.+.|+++.++..+. +++++....+|.
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~pDG 217 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT-------------------------------DAEEIKKYNPDG 217 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC-------------------------------CHHHHHhhCCCE
Confidence 35666543 433 357788889999988875431 122222224699
Q ss_pred EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|||+||.+-. .......++++++.+ ++||.+||.|.++|+.+
T Consensus 218 IiLSgGPgdp--~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 218 IFLSNGPGDP--AAVEPAIETIRKLLE-KIPIFGICLGHQLLALA 259 (358)
T ss_pred EEECCCCCCH--HHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 9999997522 234567788888887 89999999999999975
No 207
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=96.56 E-value=0.0079 Score=57.70 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=59.7
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
++|+++=+ ++. ....+.|++.|+++.++..+- ..+++...++|.
T Consensus 193 ~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~dg 236 (382)
T CHL00197 193 LKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS-------------------------------PYQDILSYQPDG 236 (382)
T ss_pred CEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC-------------------------------CHHHHhccCCCE
Confidence 45555544 322 347888888899988884431 122222236899
Q ss_pred EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
|+++||++... ......+.++++.+.++||.+||.|-++|+.+
T Consensus 237 IilSgGPg~p~--~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a 279 (382)
T CHL00197 237 ILLSNGPGDPS--AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA 279 (382)
T ss_pred EEEcCCCCChh--HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence 99999987322 23456677777777789999999999999987
No 208
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.46 E-value=0.0082 Score=60.43 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237 218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE 297 (392)
Q Consensus 218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~ 297 (392)
....+.|++.|+++.+++.+-. .+..++++...++|.||+.||++... +.
T Consensus 15 ~nl~~~lr~~g~~v~V~~~~~~---------------------------~~~~~~~l~~~~~~~IIlSpGPg~p~---d~ 64 (531)
T PRK09522 15 YNLADQLRSNGHNVVIYRNHIP---------------------------AQTLIERLATMSNPVLMLSPGPGVPS---EA 64 (531)
T ss_pred HHHHHHHHHCCCCEEEEECCCC---------------------------CccCHHHHHhcCcCEEEEcCCCCChh---hC
Confidence 4477888888999988875410 01122232223578999999988432 11
Q ss_pred HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 298 NVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
....++.+....++||.+||.|.++|+.+
T Consensus 65 ~~~~~i~~~~~~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 65 GCMPELLTRLRGKLPIIGICLGHQAIVEA 93 (531)
T ss_pred CCCHHHHHHHhcCCCEEEEcHHHHHHHHh
Confidence 22334444445789999999999999988
No 209
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=96.44 E-value=0.0071 Score=60.26 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=41.5
Q ss_pred CCccEEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.++|+|++|||..... +.++..+.+.|+++.++|++|.++|.|-++|.+.
T Consensus 283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 3789999999985322 3355668899999999999999999999999985
No 210
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.43 E-value=0.0063 Score=57.89 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=37.1
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+|.||++||.+-. .+.....++++++.++ +|+.+||.|.++|+.+
T Consensus 208 ~~DGIiLsgGPgdp--~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a 253 (354)
T PRK12838 208 NPDGIVLSNGPGDP--KELQPYLPEIKKLISS-YPILGICLGHQLIALA 253 (354)
T ss_pred CCCEEEEcCCCCCh--HHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence 69999999997521 2234567888888877 9999999999999975
No 211
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=96.43 E-value=0.0079 Score=57.32 Aligned_cols=74 Identities=26% Similarity=0.391 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237 219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN 298 (392)
Q Consensus 219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~ 298 (392)
..+..|.+.|+++.++..+. .++++....+|.||++||++... ..+.
T Consensus 186 ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~pDGIiLSgGPgdp~--~~~~ 232 (358)
T TIGR01368 186 NILRRLVKRGCEVTVVPYDT-------------------------------DAEEIKKYNPDGIFLSNGPGDPA--AVEP 232 (358)
T ss_pred HHHHHHHHCCCEEEEEcCCC-------------------------------CHHHHHhhCCCEEEECCCCCCHH--HHHH
Confidence 57788888899988875431 12222212469999999986322 2456
Q ss_pred HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 299 VIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 299 l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..++++++.+ ++||.+||.|.++|+.+
T Consensus 233 ~i~~i~~~~~-~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 233 AIETIRKLLE-KIPIFGICLGHQLLALA 259 (358)
T ss_pred HHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 7788888887 89999999999999987
No 212
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.41 E-value=0.0087 Score=56.95 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237 218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE 297 (392)
Q Consensus 218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~ 297 (392)
....+.|.+.|+++.++..+.. .+++....+|.|+++||++... ...
T Consensus 179 ~ni~~~L~~~G~~v~vvp~~~~-------------------------------~~~i~~~~~DGIiLsgGPgdp~--~~~ 225 (354)
T PRK12838 179 KSILRSLSKRGCKVTVLPYDTS-------------------------------LEEIKNLNPDGIVLSNGPGDPK--ELQ 225 (354)
T ss_pred HHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEEcCCCCChH--HhH
Confidence 5577778888999888854311 1111113689999999986321 234
Q ss_pred HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 298 NVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
...++++++.++ +|+.+||.|.++|+.+
T Consensus 226 ~~~~~i~~~~~~-~PvlGIClG~QlLa~a 253 (354)
T PRK12838 226 PYLPEIKKLISS-YPILGICLGHQLIALA 253 (354)
T ss_pred HHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence 567888888877 9999999999999977
No 213
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.30 E-value=0.0049 Score=54.36 Aligned_cols=48 Identities=31% Similarity=0.501 Sum_probs=39.3
Q ss_pred CcCEEEEcCCCCh----hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGRAP----EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~~~----~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
++|.||+||+..+ ..+. ...+.++|+++.++++|+.++|.|.++|+++
T Consensus 37 ~~d~iIlPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 37 NSKALILPGDGHFDKAMENLN-STGLRSTIDKHVESGKPLFGICIGFQILFES 88 (210)
T ss_pred cCCEEEECCCCchHHHHHHHH-HcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence 6899999997532 1133 3468899999999999999999999999986
No 214
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.15 E-value=0.025 Score=48.26 Aligned_cols=88 Identities=24% Similarity=0.398 Sum_probs=60.4
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
+|+++ |.++.. .....+.|++.|.++.++..+. .+..+++...+|+|
T Consensus 3 ~IL~I--DNyDSF-tyNLv~yl~~lg~~v~V~rnd~------------------------------~~~~~~~~~~pd~i 49 (191)
T COG0512 3 MILLI--DNYDSF-TYNLVQYLRELGAEVTVVRNDD------------------------------ISLELIEALKPDAI 49 (191)
T ss_pred eEEEE--ECccch-HHHHHHHHHHcCCceEEEECCc------------------------------cCHHHHhhcCCCEE
Confidence 45444 444421 3456788888888887765541 11223334468999
Q ss_pred EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+|.-|.|... +.....+.|+++ .+..||.+||-|-+.++++
T Consensus 50 viSPGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~ 90 (191)
T COG0512 50 VISPGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEA 90 (191)
T ss_pred EEcCCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHH
Confidence 9988877443 445678888888 6778999999999999876
No 215
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=96.13 E-value=0.012 Score=52.93 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=39.5
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..++|.|+++||.+... .+....+++++.++++|+.+||.|.++|+.+
T Consensus 53 l~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~ 100 (235)
T cd01746 53 LKGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE 100 (235)
T ss_pred hccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence 34799999999986433 3466788999999999999999999998755
No 216
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.10 E-value=0.026 Score=53.76 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=67.0
Q ss_pred CEEEEEecCCCCccchHHHHHHHHh---CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLA---FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~---ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
|+|+|.-.+|.....+...++.|++ ..|.|..++.+. +..+ .+. ..
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~--------------------------l~~~-pw~----~~ 49 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE--------------------------LLNE-PWQ----SK 49 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH--------------------------hhcC-ccc----cC
Confidence 3689999999999899999999985 357777776531 1111 122 36
Q ss_pred ccEEEEcCCCCccccc-CCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 86 YDGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~-~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
++++|+|||....... -+..-.+.||++.++|+.-.++|.|+.+-.+
T Consensus 50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 8999999997533311 2455678899999999999999999876543
No 217
>PLN02347 GMP synthetase
Probab=96.07 E-value=0.032 Score=56.25 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=55.8
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL 282 (392)
Q Consensus 203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v 282 (392)
+|+++-+... -.......+++.|..+.++..+. +.+++...++|.|
T Consensus 12 ~IlIID~G~~---~t~~I~r~lrelgv~~~v~p~~~-------------------------------~~~~i~~~~~dgI 57 (536)
T PLN02347 12 VVLILDYGSQ---YTHLITRRVRELGVYSLLLSGTA-------------------------------SLDRIASLNPRVV 57 (536)
T ss_pred EEEEEECCCc---HHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhcCCCCEE
Confidence 4554444322 24556777888888877775431 1222222368999
Q ss_pred EEcCCCChhhccCChHHH-HHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 283 VVPGGRAPEYLALNENVI-ALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 283 iipgg~~~~~~~~~~~l~-~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
|++||++..+....+.+. .+++...+.++||.+||.|.++|+.+
T Consensus 58 ILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a 102 (536)
T PLN02347 58 ILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK 102 (536)
T ss_pred EECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence 999997643322222222 23333446789999999999999988
No 218
>PLN02347 GMP synthetase
Probab=96.07 E-value=0.025 Score=57.02 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=56.7
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.+|+|+=+-. . -.......|++.|..+.++..+. +.+++...++|+
T Consensus 11 ~~IlIID~G~-~--~t~~I~r~lrelgv~~~v~p~~~-------------------------------~~~~i~~~~~dg 56 (536)
T PLN02347 11 DVVLILDYGS-Q--YTHLITRRVRELGVYSLLLSGTA-------------------------------SLDRIASLNPRV 56 (536)
T ss_pred CEEEEEECCC-c--HHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhcCCCCE
Confidence 3677664422 1 23556788889998888775442 122222236899
Q ss_pred EEEcCCCCcccccCCHHHH-HHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~~~~~~~~l~-~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
||++||.+.......+.+. .+++...+.++||.+||.|.++|+.+
T Consensus 57 IILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a 102 (536)
T PLN02347 57 VILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK 102 (536)
T ss_pred EEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence 9999997532222223222 23333445789999999999999976
No 219
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.03 E-value=0.033 Score=53.07 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=67.4
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhc---CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQAL---ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG 278 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~---~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 278 (392)
++|+|+--+|.....+...++.|++. .|.|..++.+. +..+. +. ..
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~--------------------------l~~~p-w~----~~ 49 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE--------------------------LLNEP-WQ----SK 49 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH--------------------------hhcCc-cc----cC
Confidence 46778888888888888899888763 46666664420 11111 21 36
Q ss_pred cCEEEEcCCCChhhc-cCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237 279 YDALVVPGGRAPEYL-ALNENVIALVKDFMEAKKPVASICHGQQILAA 325 (392)
Q Consensus 279 ~D~viipgg~~~~~~-~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ 325 (392)
++++|+|||.+..+. .-+..-.+.||+|.++|....++|.|+.+-..
T Consensus 50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 899999999874442 33566788999999999999999999876664
No 220
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=95.81 E-value=0.014 Score=52.41 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=38.7
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
..||.|+++||.+... ......+++++.++++|+.+||.|.++|+.+
T Consensus 54 ~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~ 100 (235)
T cd01746 54 KGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE 100 (235)
T ss_pred ccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence 4799999999976433 3456788999999999999999999988754
No 221
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.79 E-value=0.014 Score=58.28 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=42.2
Q ss_pred CCCcCEEEEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 276 VSGYDALVVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.+++|+|++|||..... +..+..+.+.|+++.++|.+|.|+|.|-++|.+.
T Consensus 282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 34789999999985322 3356668899999999999999999999999983
No 222
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=95.79 E-value=0.031 Score=53.95 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=54.2
Q ss_pred hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237 217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN 296 (392)
Q Consensus 217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~ 296 (392)
-...++.|++.|+++.++..+. ..+++...++|.||+.||+|... ..
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~-------------------------------~~~ei~~~~pDGIiLSnGPGDP~--~~ 297 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTW-------------------------------PASEALKMKPDGVLFSNGPGDPS--AV 297 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCC-------------------------------CHHHHhhcCCCEEEEcCCCCChh--Hh
Confidence 4667788888899988886531 11122123689999999987322 23
Q ss_pred hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 297 ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+...+.+++.. .++||.+||.|-++|+.+
T Consensus 298 ~~~ie~ik~l~-~~iPIlGICLGhQlLa~A 326 (415)
T PLN02771 298 PYAVETVKELL-GKVPVFGICMGHQLLGQA 326 (415)
T ss_pred hHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence 45667777765 478999999999999988
No 223
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=95.77 E-value=0.026 Score=54.50 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=54.2
Q ss_pred hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCC
Q 016237 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMN 103 (392)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~ 103 (392)
-..+...|++.|+++.++..+. +.+++...++|.||+.||.+-. ...
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~-------------------------------~~~ei~~~~pDGIiLSnGPGDP--~~~ 297 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTW-------------------------------PASEALKMKPDGVLFSNGPGDP--SAV 297 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCC-------------------------------CHHHHhhcCCCEEEEcCCCCCh--hHh
Confidence 4667778888888888875542 1222222368999999997522 133
Q ss_pred HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+...+.+++.. .++||.+||.|.++|+.+
T Consensus 298 ~~~ie~ik~l~-~~iPIlGICLGhQlLa~A 326 (415)
T PLN02771 298 PYAVETVKELL-GKVPVFGICMGHQLLGQA 326 (415)
T ss_pred hHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence 55677777766 478999999999999976
No 224
>PRK00074 guaA GMP synthase; Reviewed
Probab=95.72 E-value=0.039 Score=55.52 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=57.3
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.+|+||=+ |.. -.......|++.|....++..+.. .+++...++|+
T Consensus 4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~-------------------------------~~~l~~~~~dg 49 (511)
T PRK00074 4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS-------------------------------AEEIRAFNPKG 49 (511)
T ss_pred CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhccCCCE
Confidence 47887766 444 445667889999988888754321 12222125799
Q ss_pred EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
||+|||...-.-...+.+ .+..++.++||.+||.|.++|+.+
T Consensus 50 IIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~ 91 (511)
T PRK00074 50 IILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ 91 (511)
T ss_pred EEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence 999999752111112333 345566899999999999999875
No 225
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=95.70 E-value=0.028 Score=56.71 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=55.6
Q ss_pred EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL 89 (392)
Q Consensus 10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i 89 (392)
||+|+ |.++- =.....+.|++.|+++.+++.+-. .+..++++...+||.|
T Consensus 3 ~iLiI--Dn~ds-ft~nl~~~lr~~g~~v~V~~~~~~---------------------------~~~~~~~l~~~~~~~I 52 (531)
T PRK09522 3 DILLL--DNIDS-FTYNLADQLRSNGHNVVIYRNHIP---------------------------AQTLIERLATMSNPVL 52 (531)
T ss_pred eEEEE--eCCCh-HHHHHHHHHHHCCCCEEEEECCCC---------------------------CccCHHHHHhcCcCEE
Confidence 55444 33331 224477888889999988875410 0112333322358899
Q ss_pred EEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 90 VIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 90 iipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|+.||.+ +......+ ++.+.+.+++||.+||.|.++|+.+
T Consensus 53 IlSpGPg~p~d~~~~~----~i~~~~~~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 53 MLSPGPGVPSEAGCMP----ELLTRLRGKLPIIGICLGHQAIVEA 93 (531)
T ss_pred EEcCCCCChhhCCCCH----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence 9999976 33222222 3333345689999999999999976
No 226
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=95.61 E-value=0.064 Score=53.36 Aligned_cols=48 Identities=31% Similarity=0.470 Sum_probs=38.5
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..++|.|++|||+|... .+.....++.+.+++.|+.+||.|.++++.+
T Consensus 341 L~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i~ 388 (525)
T TIGR00337 341 LKGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVIE 388 (525)
T ss_pred hcCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 34689999999987533 3455667888888999999999999988644
No 227
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=95.60 E-value=0.03 Score=56.68 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=36.2
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..+|.||+.||++... ++....++++.+ ..++||.+||.|.++|+.+
T Consensus 43 ~~~d~vIlsgGP~~p~--~~~~~~~li~~~-~~~~PvLGIClG~QlLa~a 89 (534)
T PRK14607 43 LNPSHIVISPGPGRPE--EAGISVEVIRHF-SGKVPILGVCLGHQAIGYA 89 (534)
T ss_pred cCCCEEEECCCCCChh--hCCccHHHHHHh-hcCCCEEEEcHHHHHHHHH
Confidence 3689999999998432 123345677764 6789999999999999988
No 228
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=95.53 E-value=0.12 Score=45.51 Aligned_cols=115 Identities=13% Similarity=0.166 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcch-hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccC
Q 016237 181 GHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYE-VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE 259 (392)
Q Consensus 181 s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e-~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 259 (392)
...++...+++... ....++.++..-.....+ .....+.|++.|.++..+.... .
T Consensus 13 ~~~~~~~~~~~~~~----~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--------------------~ 68 (210)
T cd03129 13 HARPILQDFLARAG----GAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--------------------T 68 (210)
T ss_pred ChHHHHHHHHHHcC----CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--------------------C
Confidence 44555666665543 234567777655433223 4456778888887766553310 0
Q ss_pred CCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 260 KPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 260 ~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..+..+.+ .....|+|+++||.-... ......+.+.|++.+.+|.++++.|.|+.++...
T Consensus 69 ------~~~~~~~~-~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 69 ------ANDPDVVA-RLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred ------CCCHHHHH-HHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 00111111 234789999999875422 2334446666777777999999999999999984
No 229
>PRK00074 guaA GMP synthase; Reviewed
Probab=95.37 E-value=0.056 Score=54.42 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=56.1
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA 281 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 281 (392)
.+|+|+-+ |.. -.......+++.|...+++..+.. ...+.+ .++|.
T Consensus 4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~----------------------------~~~l~~---~~~dg 49 (511)
T PRK00074 4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS----------------------------AEEIRA---FNPKG 49 (511)
T ss_pred CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC----------------------------HHHHhc---cCCCE
Confidence 45665555 323 455677888889988777754310 011222 25799
Q ss_pred EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
||+|||+...+-...+.+ .+...+.++||.+||.|.++|+.+
T Consensus 50 IIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~ 91 (511)
T PRK00074 50 IILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ 91 (511)
T ss_pred EEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence 999999763221112222 344567899999999999999987
No 230
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=95.28 E-value=0.026 Score=51.44 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=38.7
Q ss_pred CcCEEEEcCCC-Chh--hc-----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGR-APE--YL-----------ALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~-~~~--~~-----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.+|.|+++||. ... .+ ..+....++++.++++++||.+||-|.++|+.+
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva 123 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA 123 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 58999999984 331 01 122456789999999999999999999999988
No 231
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.26 E-value=0.05 Score=47.11 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=38.4
Q ss_pred CCccEEEEcCCCCccc--ccCC-HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPEY--LAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~--~~~~-~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+.||++++-||..-+. ..++ ..-..-|+++.++++|+.+||.|.++|.+.
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 4799999988864222 2223 445667899999999999999999999865
No 232
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=95.20 E-value=0.022 Score=51.88 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=37.9
Q ss_pred CccEEEEcCCC-Ccc--------c-----ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGR-APE--------Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~-~~~--------~-----~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+|+|+++||. ... . ...+....++++.++++++||.+||-|.++|+.+
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva 123 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA 123 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 59999999984 331 0 0112345789999999999999999999999876
No 233
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=95.17 E-value=0.023 Score=35.08 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=21.1
Q ss_pred CEEEEEecC-----------CCCccchHHHHHHHHhCC
Q 016237 9 RSVLLLCGD-----------YMEDYEAMVPFQALLAFG 35 (392)
Q Consensus 9 ~kI~ill~~-----------g~~~~e~~~~~~~l~~ag 35 (392)
|||+|++.. |+...|++.|+++|.++|
T Consensus 1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence 589999954 888899999999999987
No 234
>PLN02327 CTP synthase
Probab=95.14 E-value=0.12 Score=51.68 Aligned_cols=48 Identities=35% Similarity=0.459 Sum_probs=38.3
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..++|.|++|||+|... .+.....++.+.++++|+.+||.|-++++-.
T Consensus 360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~vie 407 (557)
T PLN02327 360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAVIE 407 (557)
T ss_pred hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 45899999999987533 2344667788888999999999999988754
No 235
>PRK06186 hypothetical protein; Validated
Probab=95.08 E-value=0.034 Score=49.37 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=39.9
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHH--HHHc
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQI--LAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~--La~a 326 (392)
..++|.|+||||+|. +.-+--+..++.+.++++|+.+||-|.++ +.-+
T Consensus 51 l~~~dgilvpgGfg~---rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~a 100 (229)
T PRK06186 51 LAGFDGIWCVPGSPY---RNDDGALTAIRFARENGIPFLGTCGGFQHALLEYA 100 (229)
T ss_pred HhhCCeeEeCCCCCc---ccHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHH
Confidence 457899999999985 34567788899999999999999999994 5544
No 236
>PRK05380 pyrG CTP synthetase; Validated
Probab=95.01 E-value=0.039 Score=54.90 Aligned_cols=48 Identities=29% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
...+|.|++|||+|... .+....+++.+.++++|+.+||.|.++++-+
T Consensus 341 L~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~va 388 (533)
T PRK05380 341 LKGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVIE 388 (533)
T ss_pred hhcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHHH
Confidence 35799999999988533 3456788999999999999999999988753
No 237
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=94.98 E-value=0.023 Score=56.23 Aligned_cols=47 Identities=30% Similarity=0.540 Sum_probs=34.3
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.++|+||+|||.....-.-...+.++|+++ |+||.+||.|-++|++.
T Consensus 35 ~~~D~lILPGG~~~~~~~l~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSLVESGSLTDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred ccCCEEEECCCchhhcchHHHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 478999999974211100134566666666 99999999999999987
No 238
>PRK06186 hypothetical protein; Validated
Probab=94.93 E-value=0.037 Score=49.16 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHH--hhcC
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI--LAAA 133 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~--La~a 133 (392)
...+|.|+||||.|.+ .-+-.+..++.+.++++|+.+||-|.++ +..+
T Consensus 51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~a 100 (229)
T PRK06186 51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQHALLEYA 100 (229)
T ss_pred HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHH
Confidence 3479999999998854 3456778899999999999999999984 4444
No 239
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=94.71 E-value=0.061 Score=54.51 Aligned_cols=87 Identities=16% Similarity=0.285 Sum_probs=54.6
Q ss_pred EEecCCCCccchHHHHHHHHhCCCe-EEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237 13 LLCGDYMEDYEAMVPFQALLAFGVS-VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI 91 (392)
Q Consensus 13 ill~~g~~~~e~~~~~~~l~~ag~~-v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii 91 (392)
||+-|.++.. .....+.|++.|.. +.++.+... +++++....+|+||+
T Consensus 2 il~idn~dsf-t~nl~~~l~~~g~~~v~~~~~~~~------------------------------~~~~~~~~~~d~vIl 50 (534)
T PRK14607 2 IILIDNYDSF-TYNIYQYIGELGPEEIEVVRNDEI------------------------------TIEEIEALNPSHIVI 50 (534)
T ss_pred EEEEECchhH-HHHHHHHHHHcCCCeEEEECCCCC------------------------------CHHHHHhcCCCEEEE
Confidence 3444544422 23466788888874 666654421 122222236899999
Q ss_pred cCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 92 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 92 pGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.||.+... ++....++++. ..+++||.+||-|.++|+.+
T Consensus 51 sgGP~~p~--~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a 89 (534)
T PRK14607 51 SPGPGRPE--EAGISVEVIRH-FSGKVPILGVCLGHQAIGYA 89 (534)
T ss_pred CCCCCChh--hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence 99986321 12234566666 46789999999999999875
No 240
>PRK05380 pyrG CTP synthetase; Validated
Probab=94.68 E-value=0.048 Score=54.27 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=38.4
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
..+|.|++|||.|... .+..+.+++.+.++++|+.+||.|.++++-
T Consensus 342 ~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v 387 (533)
T PRK05380 342 KGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI 387 (533)
T ss_pred hcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence 4799999999987543 235678889999999999999999998874
No 241
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=94.68 E-value=0.016 Score=48.49 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc--ccCC
Q 016237 26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY--LAMN 103 (392)
Q Consensus 26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~--~~~~ 103 (392)
...+.|++.|++++.+...... .....+. ..+.|+|++.||.-... ...+
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~--------------------------~~~~~~~--i~~ad~I~~~GG~~~~l~~~l~~ 55 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRN--------------------------DADILEA--IREADAIFLGGGDTFRLLRQLKE 55 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCG--------------------------HHHHHHH--HHHSSEEEE--S-HHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeccCCC--------------------------hHHHHHH--HHhCCEEEECCCCHHHHHHHHHh
Confidence 4578899999998887765310 0011121 23689999999974322 3455
Q ss_pred HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 104 DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
..+.+.|++.+++|+++++...|+.++...
T Consensus 56 t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~ 85 (154)
T PF03575_consen 56 TGLDEAIREAYRKGGVIIGTSAGAMILGPS 85 (154)
T ss_dssp TTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred CCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence 679999999999999999999999887554
No 242
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=94.55 E-value=0.099 Score=48.85 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237 219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN 298 (392)
Q Consensus 219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~ 298 (392)
..+..|.+.|+++.++..+ .+.+++-..++|.|++.-|+|-. ..-+.
T Consensus 192 nIlr~L~~rg~~vtVVP~~-------------------------------t~~eeIl~~~pDGiflSNGPGDP--~~~~~ 238 (368)
T COG0505 192 NILRELVKRGCRVTVVPAD-------------------------------TSAEEILALNPDGIFLSNGPGDP--APLDY 238 (368)
T ss_pred HHHHHHHHCCCeEEEEcCC-------------------------------CCHHHHHhhCCCEEEEeCCCCCh--hHHHH
Confidence 4666777788888888553 22344333468999999999832 23467
Q ss_pred HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 299 VIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 299 l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.++.+|+.....+|+.+||.|-++||.|
T Consensus 239 ~i~~ik~l~~~~iPifGICLGHQllalA 266 (368)
T COG0505 239 AIETIKELLGTKIPIFGICLGHQLLALA 266 (368)
T ss_pred HHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence 8889999999999999999999999988
No 243
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=94.50 E-value=0.21 Score=52.63 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=34.8
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHc----CCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEA----KKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~----g~~i~aiC~G~~~La~a 326 (392)
..||.|||.||+|... ++.-..++++..+. .+||.+||.|.++|+.+
T Consensus 52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 4799999999988432 23334455555544 48999999999999988
No 244
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.49 E-value=0.37 Score=42.76 Aligned_cols=118 Identities=11% Similarity=0.181 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcch-hHHHHHHHHhcCCe-EEEEcCCCCCCCCCCCcccCCCCCccc
Q 016237 180 EGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYE-VAVPFQSLQALECH-VDAVCPKKKAGDSCPTAVHDFEGDQTY 257 (392)
Q Consensus 180 ~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e-~~~~~~~~~~~~~~-v~~~s~~~~~~~~~~~~~~~~~~~~~~ 257 (392)
....++..++++...+ ...++.++-+-.....+ .......|++.|++ ++++..+...
T Consensus 12 ~~~~~i~~~~~~~ag~----~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~----------------- 70 (217)
T cd03145 12 YDNRAILQRFVARAGG----AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSRE----------------- 70 (217)
T ss_pred cCHHHHHHHHHHHcCC----CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChH-----------------
Confidence 3555667777776542 34567777665433333 33366677887864 5555332110
Q ss_pred cCCCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 258 SEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 258 ~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
-..+..+.+ ...+.|+|++.||.-... ......+.+.|++.+++|.++++..+|+.++...
T Consensus 71 -------~a~~~~~~~-~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 71 -------AANDPEVVA-RLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred -------HcCCHHHHH-HHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 001111111 134689999999875422 3456688899999999999999999999998765
No 245
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.46 E-value=0.18 Score=44.72 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=40.8
Q ss_pred CCccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+.|+|++.||.-.. .......+.+.|++.+++|.++++...|+.++.+.
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 478999999997432 23455678899999999999999999999998764
No 246
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=94.26 E-value=0.14 Score=50.23 Aligned_cols=49 Identities=16% Similarity=0.398 Sum_probs=35.7
Q ss_pred CccEEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+.|++++||-...-. ..+..-+-.-|.++.+++.+|.+||.|-++|.+.
T Consensus 290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence 489999999865321 1223334556677777799999999999999864
No 247
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.25 E-value=0.05 Score=47.13 Aligned_cols=50 Identities=32% Similarity=0.470 Sum_probs=39.4
Q ss_pred CCcCEEEEcCCCChh-hc-cCC-hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPE-YL-ALN-ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~-~~-~~~-~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+.||++++.||-.-+ .+ ..+ ..-.+-|++..++++|+.+||.|.++|.+.
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 479999998876532 22 333 455678999999999999999999999865
No 248
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.24 E-value=0.13 Score=45.33 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+.|+|+++||.-... ......+.+.|++.+.+|.++++.|.|+.++.+.
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 4789999999974322 2233346666677777999999999999999985
No 249
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.16 Score=52.68 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=75.4
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
.||+||-.+|.+ .-......|.+|||+..=++.+.- +.-+ ...++|-.
T Consensus 1059 PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmtDl-------------------------L~G~-----~~ld~frG 1106 (1320)
T KOG1907|consen 1059 PKVAILREEGVN--GDREMAAAFYAAGFETVDVTMTDL-------------------------LAGR-----HHLDDFRG 1106 (1320)
T ss_pred CceEEeeccccc--cHHHHHHHHHHcCCceeeeeeehh-------------------------hcCc-----eeHhHhcc
Confidence 499999999998 567778899999998766654420 1112 23346889
Q ss_pred EEEcCCCC-c----------ccccCCHHHHHHHHHHHhC-CCeEEEEchhhHHhhcCcccCCeeEecCCCc
Q 016237 89 LVIPGGRA-P----------EYLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPV 147 (392)
Q Consensus 89 iiipGG~~-~----------~~~~~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~agll~g~~~T~~~~~ 147 (392)
|+.+||++ + .....++.++.-..+|+++ ...-.+||+|.++++..|.+- -.+-.+|..
T Consensus 1107 laf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~-p~~~~~p~~ 1176 (1320)
T KOG1907|consen 1107 LAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIG-PEVGKWPDV 1176 (1320)
T ss_pred eeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccC-ccccCCCce
Confidence 99999863 1 2256688888888888876 566889999999999988663 344444443
No 250
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=94.05 E-value=0.25 Score=45.99 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=60.4
Q ss_pred CCEEEEEe-cCCCCccchHHHHHHHHhC--CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237 8 KRSVLLLC-GDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS 84 (392)
Q Consensus 8 ~~kI~ill-~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 84 (392)
+.||+||= .|.-..+|. .....|... .++++++.+...+ .-.++..+--.--.+++++...
T Consensus 35 pl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h~---------------~~~~~~~hl~~~y~~~~~i~~~ 98 (302)
T PRK05368 35 PLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSHE---------------SKNTPAEHLENFYCTFEDIKDE 98 (302)
T ss_pred CccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCcC---------------CCCCCHHHHHHhccCHHHhccC
Confidence 56888875 344443333 333444332 3667777765432 0000111101111356666667
Q ss_pred CccEEEEcCCCCc-ccccC---CHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 85 KYDGLVIPGGRAP-EYLAM---NDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~-~~~~~---~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.||++||.|..-. ...-+ =.++.+++....++.+++.+||-|.++++.+
T Consensus 99 ~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a 151 (302)
T PRK05368 99 KFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH 151 (302)
T ss_pred CCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 8999999997522 11111 1234444444445689999999999998865
No 251
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=93.97 E-value=0.13 Score=48.00 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=43.4
Q ss_pred CcCCCCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 77 TFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 77 ~~~~~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+.+++-.-++|.||+.-|.|-. ..-+..++.+++.....+|+.+||-|-++|+-|
T Consensus 212 ~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA 266 (368)
T COG0505 212 SAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA 266 (368)
T ss_pred CHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence 3444433479999999998732 234678899999999999999999999999966
No 252
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=93.68 E-value=0.22 Score=41.06 Aligned_cols=85 Identities=24% Similarity=0.209 Sum_probs=57.4
Q ss_pred EEEEEec--CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 10 SVLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 10 kI~ill~--~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
|++|+-. +|-.-.-...+..-|++.|++|++.-... ..+.+..+||
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~--------------------------------~~~~~l~~yd 49 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHA--------------------------------VEEPALEDYD 49 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhh--------------------------------hhccChhhCc
Confidence 4555543 33332233445566778889888865542 2333456899
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHh--CCCeEEEEchhhH
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL 128 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~--~~~~i~aic~G~~ 128 (392)
+|+|.. .......++.+.+|++++.. +.+|.+..|.+..
T Consensus 50 avVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~ 90 (175)
T COG4635 50 AVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT 90 (175)
T ss_pred eEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence 999933 45555678899999999988 5899999997653
No 253
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=93.60 E-value=0.19 Score=45.57 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=64.8
Q ss_pred CEEEEEecCCCCccc-hHHHHHHHHhCCC-eEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYMEDYE-AMVPFQALLAFGV-SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~~~~e-~~~~~~~l~~ag~-~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
.||+|+-.-..+..+ .....+.|++.|+ ++.++...... .. ..+...+- ..+.
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~------------------~a-----~~~~~~~~--l~~a 83 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRERE------------------DA-----SDENAIAL--LSNA 83 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChH------------------Hc-----cCHHHHHH--HhhC
Confidence 588888764433333 3345567788887 46666543210 00 00000111 2368
Q ss_pred cEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 87 DGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 87 D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
|+|++.||.-.. .......+.+.|++.+++|.++++...|+.++...-
T Consensus 84 d~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~~ 133 (250)
T TIGR02069 84 TGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDTM 133 (250)
T ss_pred CEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccce
Confidence 999999997432 234667788999999999999999999999887653
No 254
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=93.58 E-value=0.062 Score=44.36 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=41.2
Q ss_pred CCCcCEEEEcCCCCh-hh-ccCChHHHHHHHHHHHcC-CcEEEEehHHHHHHHc
Q 016237 276 VSGYDALVVPGGRAP-EY-LALNENVIALVKDFMEAK-KPVASICHGQQILAAA 326 (392)
Q Consensus 276 ~~~~D~viipgg~~~-~~-~~~~~~l~~~l~~~~~~g-~~i~aiC~G~~~La~a 326 (392)
..+.|++|||||... .. +.+...|.+-|.++..++ +++=+.|.|-.+|.+.
T Consensus 54 ~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 54 LAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred HhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 347899999999863 22 455566889999998888 8999999999888765
No 255
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.66 Score=45.33 Aligned_cols=43 Identities=33% Similarity=0.458 Sum_probs=36.6
Q ss_pred cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHH
Q 016237 279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA 324 (392)
Q Consensus 279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La 324 (392)
+|.++||||+|. +.-+--+..++.+.+++.|..+||.|-++..
T Consensus 344 ~dgIlVPGGFG~---RG~eGkI~Ai~yAREn~iP~lGIClGmQ~av 386 (533)
T COG0504 344 VDGILVPGGFGY---RGVEGKIAAIRYARENNIPFLGICLGMQLAV 386 (533)
T ss_pred CCEEEeCCCCCc---CchHHHHHHHHHHHhcCCCEEEEchhHHHHH
Confidence 899999999995 3356677788888899999999999998654
No 256
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=93.42 E-value=0.29 Score=52.17 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=34.2
Q ss_pred CCcCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..||.|||.+|+|... ........+.|+++ .+.||.+||.|-++|+.+
T Consensus 130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV 178 (918)
T ss_pred cCCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence 4689999999998422 11222334555543 579999999999999987
No 257
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=93.24 E-value=0.36 Score=50.84 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=33.4
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhC----CCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~----~~~i~aic~G~~~La~a 133 (392)
..||+|||.||.|... +..-..+++++.+. .+||.+||.|.++|+.+
T Consensus 52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 3799999999976432 22223445555543 49999999999999976
No 258
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=93.15 E-value=0.17 Score=44.84 Aligned_cols=50 Identities=28% Similarity=0.475 Sum_probs=39.8
Q ss_pred CCcCEEEEcCCCCh--hh-------------ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAP--EY-------------LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~--~~-------------~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+..|.|+++||... .. ..+|.--+.+||++.++++||.+||=|.++|.-+
T Consensus 59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa 123 (243)
T COG2071 59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVA 123 (243)
T ss_pred hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHH
Confidence 45799999999431 11 1356677889999999999999999999999865
No 259
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=93.02 E-value=0.42 Score=41.07 Aligned_cols=49 Identities=33% Similarity=0.554 Sum_probs=38.8
Q ss_pred CCCccEEEEcCCCC-cccccCC---HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 83 PSKYDGLVIPGGRA-PEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 83 ~~~~D~iiipGG~~-~~~~~~~---~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+.||+++|.|... +. .+. .+|.+++++.....+.|.+||-|-+++|++
T Consensus 57 l~ky~gfvIsGS~~dAf--~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara 109 (245)
T KOG3179|consen 57 LEKYDGFVISGSKHDAF--SDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA 109 (245)
T ss_pred hhhhceEEEeCCccccc--ccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence 44799999999742 21 122 368889999888889999999999999986
No 260
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=93.01 E-value=0.18 Score=44.62 Aligned_cols=50 Identities=28% Similarity=0.483 Sum_probs=38.2
Q ss_pred CCccEEEEcCCCCcc--c-------------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~--~-------------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
+..|.|+++||.... . ..+|.--..+|+++.++++||.+||=|.++|.-+
T Consensus 59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa 123 (243)
T COG2071 59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVA 123 (243)
T ss_pred hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHH
Confidence 468999999994321 1 1133345789999999999999999999999754
No 261
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=92.84 E-value=0.053 Score=45.34 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCC
Q 016237 219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALN 296 (392)
Q Consensus 219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~ 296 (392)
...+.|++.|++++.+...... .....+. ...+|+|++.||.-... ..++
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~--------------------------~~~~~~~--i~~ad~I~~~GG~~~~l~~~l~~ 55 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRN--------------------------DADILEA--IREADAIFLGGGDTFRLLRQLKE 55 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCG--------------------------HHHHHHH--HHHSSEEEE--S-HHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeccCCC--------------------------hHHHHHH--HHhCCEEEECCCCHHHHHHHHHh
Confidence 4678899999998777654210 0111111 13689999999875432 3456
Q ss_pred hHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 297 ENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
..+.+.|++.+++|+++++...|+.++...+
T Consensus 56 t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~~ 86 (154)
T PF03575_consen 56 TGLDEAIREAYRKGGVIIGTSAGAMILGPSI 86 (154)
T ss_dssp TTHHHHHHHHHHTTSEEEEETHHHHCTSSBS
T ss_pred CCHHHHHHHHHHCCCEEEEEChHHhhccCce
Confidence 7799999999999999999999998865543
No 262
>PLN02327 CTP synthase
Probab=92.78 E-value=0.17 Score=50.56 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=36.6
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
..++|.|++|||.+... ....+..++.+.++++|+.+||.|.++++-
T Consensus 360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~vi 406 (557)
T PLN02327 360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAVI 406 (557)
T ss_pred hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 34899999999986433 223456677778899999999999998864
No 263
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=92.58 E-value=0.48 Score=41.24 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=76.2
Q ss_pred ecCCCCChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcch---hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCC
Q 016237 175 TGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYE---VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDF 251 (392)
Q Consensus 175 T~~g~~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e---~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~ 251 (392)
-|+|..+..+........+........++|+++-+-+..... ..-.+++|+..|.++.-++....+
T Consensus 6 Ls~~~~~~~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~----------- 74 (224)
T COG3340 6 LSSSTFSFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPP----------- 74 (224)
T ss_pred ecCCCcccchhhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCC-----------
Confidence 344334444433333333332222235577777654433322 344778888889887777654221
Q ss_pred CCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 252 EGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 252 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
...++. ...+.|+|+|.||....- ..+...+.+.||+..++|.+.++..+|+.+-...+
T Consensus 75 ----------------~~~Ie~-~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I 135 (224)
T COG3340 75 ----------------LAAIEN-KLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI 135 (224)
T ss_pred ----------------HHHHHH-hhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence 112222 223579999999875422 46678899999999999999999988877655554
No 264
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=92.51 E-value=0.18 Score=50.16 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.4
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
..+|.|++|||.+... ....+..++.+.+++.|+.+||.|.++++-
T Consensus 342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i 387 (525)
T TIGR00337 342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVI 387 (525)
T ss_pred cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 3699999999987533 234456777788899999999999988864
No 265
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=92.43 E-value=0.24 Score=45.56 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCcCEEEEcCCC-Chhh---ccCChHHHHHHHHHHHcC--CcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGR-APEY---LALNENVIALVKDFMEAK--KPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~-~~~~---~~~~~~l~~~l~~~~~~g--~~i~aiC~G~~~La~a 326 (392)
..+|.|++|||. .... +.....+.++..+..++| .||-++|.|.++|+.+
T Consensus 53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~ 108 (273)
T cd01747 53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL 108 (273)
T ss_pred hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence 468999999985 3321 222233444444444445 7999999999999874
No 266
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=92.32 E-value=0.34 Score=51.69 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=53.7
Q ss_pred EEecCCCCccchHHHHHHHHhC-CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCC-----CCCc
Q 016237 13 LLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID-----PSKY 86 (392)
Q Consensus 13 ill~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~ 86 (392)
+|+-|.++-.-. .+++.|++. |.++.++..+.- +++++. ...|
T Consensus 84 iLlIDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~------------------------------~~~~~~~~~~~~~~~ 132 (918)
T PLN02889 84 TLLIDNYDSYTY-NIYQELSIVNGVPPVVVRNDEW------------------------------TWEEVYHYLYEEKAF 132 (918)
T ss_pred EEEEeCCCchHH-HHHHHHHHhcCCCEEEEeCCCC------------------------------CHHHHHhhhhcccCC
Confidence 566677763322 256667666 777777665421 122211 2368
Q ss_pred cEEEEcCCCCccccc-CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 87 DGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 87 D~iiipGG~~~~~~~-~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
|.|||.+|.|..... +-....++|++. .+.||.+||.|-++|+.+
T Consensus 133 d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 133 DNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV 178 (918)
T ss_pred CEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence 999999998733211 112234555543 479999999999999875
No 267
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=92.13 E-value=0.21 Score=45.96 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCccEEEEcCCC-CcccccCCHHHHHHHHHHH---hCC--CeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSG--KTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~-~~~~~~~~~~l~~~l~~~~---~~~--~~i~aic~G~~~La~a 133 (392)
..+|.|++|||. .......-+....+++.+. ++| .||.++|.|..+|+.+
T Consensus 53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~ 108 (273)
T cd01747 53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL 108 (273)
T ss_pred hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence 378999999995 3321111223344444444 444 7999999999999863
No 268
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=92.08 E-value=0.46 Score=43.12 Aligned_cols=113 Identities=13% Similarity=0.171 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCcCCCCccEEEEeCCCCCcch-hHHHHHHHHhcCC-eEEEEcCCCCCCCCCCCcccCCCCCccccCCCC
Q 016237 185 FIRLFLKALGGTITGSDKRILFLCGDYMEDYE-VAVPFQSLQALEC-HVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG 262 (392)
Q Consensus 185 ~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e-~~~~~~~~~~~~~-~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (392)
...++++...+.. .+|.++..-.....+ .....+.|++.|+ +++++...... .
T Consensus 16 i~~~~~~lag~~~----~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~-------------------~-- 70 (250)
T TIGR02069 16 ILREFVSRAGGED----AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRERE-------------------D-- 70 (250)
T ss_pred HHHHHHHHhCCCC----ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChH-------------------H--
Confidence 4555555544432 467777653333223 3346678888887 46666543110 0
Q ss_pred CcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 263 HNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 263 ~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..+..+.+ .....|+|++.||.-... ......+.+.|++.+++|.++++..+|+.++...
T Consensus 71 ---a~~~~~~~-~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 71 ---ASDENAIA-LLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred ---ccCHHHHH-HHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 00111111 123689999999875322 3467788899999999999999999999977644
No 269
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=91.98 E-value=0.3 Score=45.45 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=61.3
Q ss_pred CCccEEEEe-CCCCCcchhHHHHHHHHhcC--CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC
Q 016237 200 SDKRILFLC-GDYMEDYEVAVPFQSLQALE--CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV 276 (392)
Q Consensus 200 ~~~~v~ill-~~~~~~~e~~~~~~~~~~~~--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 276 (392)
+..+|+|+- .+.-..+|. .+...|.... ++++++.+..-+.. .+....--.....++++..
T Consensus 34 rpl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h~~~---------------~~~~~hl~~~y~~~~~i~~ 97 (302)
T PRK05368 34 RPLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSHESK---------------NTPAEHLENFYCTFEDIKD 97 (302)
T ss_pred CCccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCcCCC---------------CCCHHHHHHhccCHHHhcc
Confidence 356777764 455444443 3444444433 56777665432200 0011111122346777766
Q ss_pred CCcCEEEEcCCCCh-hhccC---ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAP-EYLAL---NENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~-~~~~~---~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.+||.+||.|..-. ..+.. =+++.+.++...++.+++.++|-|.++++.+
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a 151 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH 151 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 79999999997632 11111 1224444444445689999999999999876
No 270
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=91.48 E-value=0.25 Score=42.35 Aligned_cols=52 Identities=33% Similarity=0.498 Sum_probs=41.7
Q ss_pred CCCCcCEEEEcCCCC--hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 275 DVSGYDALVVPGGRA--PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 275 ~~~~~D~viipgg~~--~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+.+.||.++|.|... ......-..|.+++++.....+.|.+||-|-+++|++
T Consensus 56 Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara 109 (245)
T KOG3179|consen 56 DLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA 109 (245)
T ss_pred hhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence 456799999998642 1223445788889999888889999999999999988
No 271
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=91.43 E-value=0.35 Score=42.06 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=39.0
Q ss_pred CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
+-|+|+|.||.--. .......+.+.|++..++|++.++...|+.+-...+
T Consensus 84 ~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I 135 (224)
T COG3340 84 KADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI 135 (224)
T ss_pred hccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence 47899998886321 234566789999999999999999999987666553
No 272
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=90.39 E-value=0.64 Score=48.83 Aligned_cols=47 Identities=34% Similarity=0.586 Sum_probs=38.6
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
+||.+++..|+|...+ -+.+..-+++....++||.+||.|-++||.+
T Consensus 210 ~yDGlflSNGPGdPe~--~~~~v~~vr~lL~~~~PvfGIClGHQllA~A 256 (1435)
T KOG0370|consen 210 EYDGLFLSNGPGDPEL--CPLLVQNVRELLESNVPVFGICLGHQLLALA 256 (1435)
T ss_pred ccceEEEeCCCCCchh--hHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence 7999999999984332 2466677777777789999999999999987
No 273
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=90.01 E-value=0.55 Score=45.90 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=35.6
Q ss_pred ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhh
Q 016237 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 131 (392)
+|+|+||||+|.+- -+--+.-++.+.+++.|..+||.|.++..
T Consensus 344 ~dgIlVPGGFG~RG---~eGkI~Ai~yAREn~iP~lGIClGmQ~av 386 (533)
T COG0504 344 VDGILVPGGFGYRG---VEGKIAAIRYARENNIPFLGICLGMQLAV 386 (533)
T ss_pred CCEEEeCCCCCcCc---hHHHHHHHHHHHhcCCCEEEEchhHHHHH
Confidence 89999999998543 35566777888889999999999998664
No 274
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=89.64 E-value=0.58 Score=49.11 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=39.2
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 133 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 133 (392)
.+||.||+..|.|-.. .-+.+.+-+++...+++||.+||.|-++||.+
T Consensus 209 ~~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A 256 (1435)
T KOG0370|consen 209 EEYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA 256 (1435)
T ss_pred cccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence 3899999999987433 23667777788888789999999999999975
No 275
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=88.64 E-value=0.31 Score=43.23 Aligned_cols=49 Identities=31% Similarity=0.580 Sum_probs=28.9
Q ss_pred CCccEEEEcCCC-Ccc--ccc-------------CCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 84 SKYDGLVIPGGR-APE--YLA-------------MNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 84 ~~~D~iiipGG~-~~~--~~~-------------~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
+..|.|++|||. ... ... ++.-=..+++.+.++++||.+||-|.++|.-
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv 121 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNV 121 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence 368999999998 331 110 1111256667777789999999999999864
No 276
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=87.23 E-value=0.9 Score=42.12 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=37.6
Q ss_pred CcCEEEEcCCC--Ch-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGR--AP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~--~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..|-+|+||-. |+ ..........+-|++..++|||+++||.|.++|-..
T Consensus 39 ~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~g 90 (541)
T KOG0623|consen 39 NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDG 90 (541)
T ss_pred cCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcc
Confidence 56889999932 32 112345677888999999999999999999988754
No 277
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=87.20 E-value=0.57 Score=41.59 Aligned_cols=49 Identities=31% Similarity=0.558 Sum_probs=30.0
Q ss_pred CcCEEEEcCCC-Ch--hhc-------------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 278 GYDALVVPGGR-AP--EYL-------------ALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 278 ~~D~viipgg~-~~--~~~-------------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..|.|++|||. .. ..+ .++.--..+++.+.++++||.+||-|.++|.-+
T Consensus 58 ~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~ 122 (217)
T PF07722_consen 58 RIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA 122 (217)
T ss_dssp CSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH
T ss_pred hcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH
Confidence 57999999998 42 111 122333456667778899999999999999764
No 278
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=86.47 E-value=3.8 Score=35.76 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=60.0
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCC---CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
|+|+|.-.+|.....+-...+.|+..- |.|+.+...- +..+. +.+ .
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~--------------------------Li~Ep-W~~----~ 49 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQF--------------------------LIKEP-WEE----T 49 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeehe--------------------------eecCc-chh----c
Confidence 368888889999999999999888632 4555554331 11222 333 3
Q ss_pred ccEEEEcCCCCcccc-cCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 86 YDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 86 ~D~iiipGG~~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
--++++|||...... .-++..-+.|..+.++|..-.+||.|..
T Consensus 50 T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~Y 93 (253)
T COG4285 50 TLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGY 93 (253)
T ss_pred eEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEecccc
Confidence 468999999653321 1234455677778889999999999874
No 279
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=85.85 E-value=1.1 Score=41.46 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=56.0
Q ss_pred CccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCC--C-
Q 016237 20 EDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGR--A- 96 (392)
Q Consensus 20 ~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~--~- 96 (392)
..-.+..+..+|+..||.+..+-.. .|+. ..|-+|+||-- +
T Consensus 10 ~agn~~si~nal~hlg~~i~~v~~P----------------------------------~DI~--~a~rLIfPGVGnfg~ 53 (541)
T KOG0623|consen 10 GAGNVRSIRNALRHLGFSIKDVQTP----------------------------------GDIL--NADRLIFPGVGNFGP 53 (541)
T ss_pred CCccHHHHHHHHHhcCceeeeccCc----------------------------------hhhc--cCceEeecCcccchH
Confidence 3345677778888888887665432 2222 56789999942 3
Q ss_pred cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 97 PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 97 ~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
+.+......+.+-|++...++||+.+||.|.+.|-.
T Consensus 54 ~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 54 AMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD 89 (541)
T ss_pred HHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence 233456678889999999999999999999998853
No 280
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=85.34 E-value=0.74 Score=39.25 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=40.2
Q ss_pred ccccCCCCCCcCEEEEcCCCChhhccCC-----hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 269 ANFESVDVSGYDALVVPGGRAPEYLALN-----ENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 269 ~~~~~~~~~~~D~viipgg~~~~~~~~~-----~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
..++++....||.+||.|..- +.++-. +++.+.+....++...+..+|-|+++.+..
T Consensus 53 ~~~~~i~~~~yDGlIITGApv-e~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~ 114 (175)
T cd03131 53 ETFDDIRDAKFDGLIVTGAPV-EHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYY 114 (175)
T ss_pred cCHHHccccCCCEEEEeCCCc-ccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 467777778999999999653 122222 245555555558889999999999986654
No 281
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=84.74 E-value=0.71 Score=39.35 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=38.3
Q ss_pred CcCCCCCCCccEEEEcCCCCcccccCC-----HHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 77 TFDEIDPSKYDGLVIPGGRAPEYLAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 77 ~~~~~~~~~~D~iiipGG~~~~~~~~~-----~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
++++++...||++||.|..- +.+... +++.+.+.-.-++...+..+|-|+++...
T Consensus 54 ~~~~i~~~~yDGlIITGApv-e~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~ 113 (175)
T cd03131 54 TFDDIRDAKFDGLIVTGAPV-EHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY 113 (175)
T ss_pred CHHHccccCCCEEEEeCCCc-ccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 46666677899999999752 112222 25655555555788999999999987653
No 282
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=84.04 E-value=1.1 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=14.5
Q ss_pred CCCcchhHHHHHHHHhcC
Q 016237 211 YMEDYEVAVPFQSLQALE 228 (392)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~ 228 (392)
|+...|++.|+++|.++|
T Consensus 21 G~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 21 GFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp -B-HHHHHHHHHHHHHTT
T ss_pred eeccHHHhhHHHHHHHCc
Confidence 777789999999999876
No 283
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=83.98 E-value=2.1 Score=41.26 Aligned_cols=44 Identities=34% Similarity=0.425 Sum_probs=35.1
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA 324 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La 324 (392)
..|.|+||||+|.+- -+--+...+.+.+++.|..+||.|-++-.
T Consensus 363 ~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~Av 406 (585)
T KOG2387|consen 363 SADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLAV 406 (585)
T ss_pred cCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHHH
Confidence 689999999998633 44556667777889999999999987643
No 284
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=83.38 E-value=5.9 Score=34.60 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=59.3
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcC---CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALE---CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG 278 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 278 (392)
++|.|.-..|.+...+-..++.|+.-- |.+..+... .+. +..|++ .
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~--------------------------~Li-~EpW~~----~ 49 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ--------------------------FLI-KEPWEE----T 49 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh--------------------------eee-cCcchh----c
Confidence 467777788999888888888887532 344444322 111 222443 3
Q ss_pred cCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHH
Q 016237 279 YDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQI 322 (392)
Q Consensus 279 ~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~ 322 (392)
--++++|||..-.+ -.-++..-+-|..+..+|....+||+|..+
T Consensus 50 T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 50 TLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred eEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 47899999987433 223444556667777899999999999764
No 285
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=82.62 E-value=2.1 Score=41.23 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.6
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhh
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 131 (392)
..|.|+||||+|.+- -.-.+.-.+.+.+++.|..+||-|.++-.
T Consensus 363 ~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~Av 406 (585)
T KOG2387|consen 363 SADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLAV 406 (585)
T ss_pred cCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHHH
Confidence 589999999998653 24455666777788999999999997643
No 286
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=82.52 E-value=4.3 Score=35.63 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=35.1
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAM 102 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~ 102 (392)
++...+..|.+.|+.+++++++. + .+.|.+||+|.-. .-
T Consensus 31 ~~~~~y~al~~~gi~vDvv~~~~----------------------------------d--L~~Ykllv~P~~~-----~l 69 (207)
T PF08532_consen 31 QVRGWYRALRELGIPVDVVSPDD----------------------------------D--LSGYKLLVLPSLY-----IL 69 (207)
T ss_dssp HHHHHHHHHHTTT--EEEE-TTS--------------------------------------TT-SEEEES--S-----C-
T ss_pred HHHHHHHHHHHcCCceEEecCcC----------------------------------C--cccCcEEEEeeEE-----EE
Confidence 56778889999999999998752 1 2369999999842 34
Q ss_pred CHHHHHHHHHHHhCCCeEEEE
Q 016237 103 NDSVIDLVRKFSNSGKTIASI 123 (392)
Q Consensus 103 ~~~l~~~l~~~~~~~~~i~ai 123 (392)
+++..+.|+++.++|..+..-
T Consensus 70 ~~~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 70 SPEFAERLRAYVENGGTLILT 90 (207)
T ss_dssp -HHH---HHHHHT-SS-EEE-
T ss_pred ChHHHHHHHHHHHCCCEEEEE
Confidence 688888999999987765543
No 287
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.16 E-value=9.4 Score=35.78 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=53.9
Q ss_pred CCEEEEEecCCCCc--cchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 8 KRSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
++||+++.-++-.. ..+....+.|++.|+++.+....... .+... ........
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~--------------------~~~~~-----~~~~~~~~ 57 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKD--------------------NPYPV-----FLASASEL 57 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhh--------------------ccccc-----hhhccccC
Confidence 56899998876432 23455667788899998776543210 00000 01111236
Q ss_pred ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEch-hh
Q 016237 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH-GQ 127 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~-G~ 127 (392)
+|.+++.||.|+ +++.++.+...+.|+.+|-. |.
T Consensus 58 ~d~vi~~GGDGT--------~l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 58 IDLAIVLGGDGT--------VLAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred cCEEEEECCcHH--------HHHHHHHhccCCCCEEEEecCCc
Confidence 899999999764 33445555567999999997 54
No 288
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=81.94 E-value=5.8 Score=32.96 Aligned_cols=46 Identities=28% Similarity=0.386 Sum_probs=36.4
Q ss_pred CCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHH--cCCcEEEEehHHH
Q 016237 274 VDVSGYDALVVPGGRAPEYLALNENVIALVKDFME--AKKPVASICHGQQ 321 (392)
Q Consensus 274 ~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~--~g~~i~aiC~G~~ 321 (392)
.++.+||+|||.. ...+...++.+.+|+++.++ +.+|.+.+|.+..
T Consensus 43 ~~l~~ydavVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~ 90 (175)
T COG4635 43 PALEDYDAVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT 90 (175)
T ss_pred cChhhCceEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence 4567899999944 34445678999999999887 5899999998854
No 289
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=80.70 E-value=10 Score=32.41 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=29.3
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHh--CCCeEEEEchh
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHG 126 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~--~~~~i~aic~G 126 (392)
..+||.||+.++--.. ...+.+.+|+++... ++|+++..|.|
T Consensus 44 l~~yD~vIlGspi~~G--~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 44 LSDYDRVVIGASIRYG--HFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHCCEEEEECccccC--CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3479999986643111 235788899887643 68899988877
No 290
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=80.50 E-value=10 Score=31.35 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=46.3
Q ss_pred cchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccccc
Q 016237 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLA 101 (392)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~ 101 (392)
.++...+..|.+.|+.+++++++.. ...|++||+|.-. .
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~~~~~------------------------------------l~~y~~vi~P~~~-----~ 64 (154)
T cd03143 26 DLALALYRALRELGIPVDVVPPDAD------------------------------------LSGYKLVVLPDLY-----L 64 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC------------------------------------cccCCEEEECchh-----c
Confidence 4778888999999999999875421 1279999999863 2
Q ss_pred CCHHHHHHHHHHHhCCCeEEEE
Q 016237 102 MNDSVIDLVRKFSNSGKTIASI 123 (392)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~i~ai 123 (392)
..+...+.|+++.++|..+.+-
T Consensus 65 ~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 65 LSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEe
Confidence 3468888999999988865553
No 291
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=80.41 E-value=7.1 Score=41.21 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=66.5
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
..||+|+--+|++ ........|..+||+..=++.+ |..-.+...++|-
T Consensus 1058 ~PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmt------------------------------DlL~G~~~ld~fr 1105 (1320)
T KOG1907|consen 1058 APKVAILREEGVN--GDREMAAAFYAAGFETVDVTMT------------------------------DLLAGRHHLDDFR 1105 (1320)
T ss_pred CCceEEeeccccc--cHHHHHHHHHHcCCceeeeeee------------------------------hhhcCceeHhHhc
Confidence 5678888877777 5555666677888775444332 1111223456788
Q ss_pred EEEEcCCCCh-hh----------ccCChHHHHHHHHHHHcCC-cEEEEehHHHHHHHcCCC
Q 016237 281 ALVVPGGRAP-EY----------LALNENVIALVKDFMEAKK-PVASICHGQQILAAAGVL 329 (392)
Q Consensus 281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~~~g~-~i~aiC~G~~~La~aglL 329 (392)
.|+.+||+.. +. ...++.+..-..+|+.+.. .=.+||+|-++++.-|.+
T Consensus 1106 Glaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i 1166 (1320)
T KOG1907|consen 1106 GLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWI 1166 (1320)
T ss_pred ceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhccc
Confidence 8999998742 21 3567888888888887655 667999999999999854
No 292
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=80.31 E-value=24 Score=32.28 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=61.3
Q ss_pred CCEEEEEecCCCC---------ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCc
Q 016237 8 KRSVLLLCGDYME---------DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF 78 (392)
Q Consensus 8 ~~kI~ill~~g~~---------~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (392)
+++|+|+...|-. ..........|++. |+|..+... .
T Consensus 146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~---------------------------------~ 191 (271)
T PF09822_consen 146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA---------------------------------N 191 (271)
T ss_pred CceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc---------------------------------c
Confidence 4677777754333 34667777777776 776665543 2
Q ss_pred CCCCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCC-eEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCe
Q 016237 79 DEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGAS 157 (392)
Q Consensus 79 ~~~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~-~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~ 157 (392)
.++ ++++|+++|+|.... -.+.-...|.++..+|. .+..+.....-+.. ...... ...+...+.|..+|-.
T Consensus 192 ~~I-P~~~d~Lvi~~P~~~----ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~~--~~~~~~-~~~~~L~~lL~~~Gi~ 263 (271)
T PF09822_consen 192 EEI-PDDADVLVIAGPKTD----LSEEELYALDQYLMNGGKLLILLDPFSVELQG--LWAGGA-QRDSNLNDLLEEYGIR 263 (271)
T ss_pred ccc-CCCCCEEEEECCCCC----CCHHHHHHHHHHHHcCCeEEEEECCccccccc--cccccc-ccccCHHHHHHHcCCE
Confidence 333 458999999885422 23555566666766655 45544443222111 111111 1166677778778754
Q ss_pred EE
Q 016237 158 WI 159 (392)
Q Consensus 158 ~~ 159 (392)
+.
T Consensus 264 ~~ 265 (271)
T PF09822_consen 264 IN 265 (271)
T ss_pred eC
Confidence 43
No 293
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=79.91 E-value=3.9 Score=40.41 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=35.0
Q ss_pred CCcCEEEEcCCCCh-hh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAP-EY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~-~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
.+.|++++||-... .. .-+..-+-.-|+++..++.+|.+||.|-++|.+.
T Consensus 289 ~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 289 RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence 45899999997642 11 1222333345566667799999999999999876
No 294
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=76.98 E-value=18 Score=33.71 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCEEEEEecCCCC-ccc-hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 8 KRSVLLLCGDYME-DYE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
+++|+|+.-.+.. ..+ +......|++.|+++.+....... . .... +.. ....+. ...
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~----------------~-~~~~--~~~-~~~~~~-~~~ 63 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARN----------------I-GLTG--YPA-LTPEEI-GAR 63 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------c-Cccc--ccc-cChhHh-ccC
Confidence 6789999876553 222 445555677888887664332110 0 0000 000 011222 135
Q ss_pred ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
+|.+++.||.|+ +++.++.+...+.|+.+|-.|-.
T Consensus 64 ~d~vi~~GGDGt--------~l~~~~~~~~~~~pilGIn~G~l 98 (291)
T PRK02155 64 ADLAVVLGGDGT--------MLGIGRQLAPYGVPLIGINHGRL 98 (291)
T ss_pred CCEEEEECCcHH--------HHHHHHHhcCCCCCEEEEcCCCc
Confidence 899999999764 33455555567899999997753
No 295
>PRK05568 flavodoxin; Provisional
Probab=75.43 E-value=21 Score=28.90 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=47.5
Q ss_pred CEEEEEecCCCCccch--HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYMEDYEA--MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~--~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
+||.|+-+...--++. ..+.+.+...|.+++++..... ...+ ..+|
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~------------------------------~~~~--~~~~ 49 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA------------------------------SVDD--VKGA 49 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC------------------------------CHHH--HHhC
Confidence 4677777654443332 2334556678888888755421 0122 3479
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHh--CCCeEEEEch
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICH 125 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~--~~~~i~aic~ 125 (392)
|.|++....-.........+..++.+... ++|.++.+|+
T Consensus 50 d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 50 DVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred CEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 99999554211111112356666666533 6888888887
No 296
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.18 E-value=28 Score=32.46 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=53.1
Q ss_pred CCCEEEEEecCCCC-ccc-hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237 7 GKRSVLLLCGDYME-DYE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS 84 (392)
Q Consensus 7 ~~~kI~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 84 (392)
.++||+|+.-++-. ..+ +....+.|.+.|+++.+-.....+ +.. ......+.... ...+. ..
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~-~~~-----------~~~~~~~~~~~---~~~~~-~~ 67 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKE-GCI-----------YTQDTVGCHIV---NKTEL-GQ 67 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccc-cch-----------hcccccccccc---chhhc-Cc
Confidence 36789999875543 223 334555678889888775321100 000 00000011110 11222 12
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
..|.+++-||.|+. +...+.+...+.||.+|-.|.
T Consensus 68 ~~D~vi~lGGDGT~--------L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 68 YCDLVAVLGGDGTF--------LSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred CCCEEEEECCcHHH--------HHHHHHhcccCCCEEEEecCC
Confidence 58999999997653 344455566789999999875
No 297
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=74.92 E-value=12 Score=33.53 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=41.5
Q ss_pred CCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237 277 SGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAA 325 (392)
Q Consensus 277 ~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ 325 (392)
...+.||+.||.-.+. ..++.++.+.|++.+.+|..+++...|+.++..
T Consensus 105 ~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 105 ENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred HhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 4689999999975433 467999999999999999999999999887753
No 298
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=74.28 E-value=17 Score=30.38 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=60.7
Q ss_pred EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237 206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP 285 (392)
Q Consensus 206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip 285 (392)
+++.|++............-+.++.+.++--+. ++ .+++.....+-++|.
T Consensus 21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDe--------------------------iT----V~El~~~NP~~LliS 70 (223)
T KOG0026|consen 21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDE--------------------------LT----VEELKRKNPRGLLIS 70 (223)
T ss_pred EEEEecccchhHHHHHHhhhccCccEEEEecCc--------------------------cc----HHHHhhcCCCeEEec
Confidence 444455554445554444456677777764431 12 223323346777777
Q ss_pred CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc----------CCCCCceeecCchh
Q 016237 286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA----------GVLKGKKCTAYPAV 340 (392)
Q Consensus 286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a----------glL~g~~~T~~~~~ 340 (392)
-|+|... ++.--.+.+++|. -..|+.++|.|-+.+-++ ++.+||.-..|..-
T Consensus 71 PGPG~P~--DsGIs~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~ 132 (223)
T KOG0026|consen 71 PGPGTPQ--DSGISLQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE 132 (223)
T ss_pred CCCCCCc--cccchHHHHHHhC-CCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC
Confidence 6676322 4455556666654 356999999999988766 47778776655544
No 299
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=74.17 E-value=11 Score=27.45 Aligned_cols=21 Identities=19% Similarity=-0.141 Sum_probs=16.4
Q ss_pred cchHHHHHHHHhCCCeEEEEC
Q 016237 22 YEAMVPFQALLAFGVSVDAAC 42 (392)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s 42 (392)
..+....+.|++.||+|.-+.
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CCchHHHHHHHHCCCEEEecC
Confidence 467788899999999875543
No 300
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=73.76 E-value=11 Score=33.06 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccC
Q 016237 216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLAL 295 (392)
Q Consensus 216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~ 295 (392)
.+...+..|.+.|+.+++++++. +.++|.+||+|+- ..-
T Consensus 31 ~~~~~y~al~~~gi~vDvv~~~~------------------------------------dL~~Ykllv~P~~-----~~l 69 (207)
T PF08532_consen 31 QVRGWYRALRELGIPVDVVSPDD------------------------------------DLSGYKLLVLPSL-----YIL 69 (207)
T ss_dssp HHHHHHHHHHTTT--EEEE-TTS--------------------------------------TT-SEEEES-------SC-
T ss_pred HHHHHHHHHHHcCCceEEecCcC------------------------------------CcccCcEEEEeeE-----EEE
Confidence 46678889999999999997641 2336999999983 345
Q ss_pred ChHHHHHHHHHHHcCCcEEE
Q 016237 296 NENVIALVKDFMEAKKPVAS 315 (392)
Q Consensus 296 ~~~l~~~l~~~~~~g~~i~a 315 (392)
+++..+.|+++.++|..+..
T Consensus 70 ~~~~~~~L~~yV~~GG~li~ 89 (207)
T PF08532_consen 70 SPEFAERLRAYVENGGTLIL 89 (207)
T ss_dssp -HHH---HHHHHT-SS-EEE
T ss_pred ChHHHHHHHHHHHCCCEEEE
Confidence 78999999999999775554
No 301
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.96 E-value=25 Score=32.72 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=51.2
Q ss_pred CEEEEEecCCCC-ccc-hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYME-DYE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
+||+|+.-++-. ..| +....+.|.+.|+++.+...... ........... ..+. ...+
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~-----------------~~~~~~~~~~~---~~~~-~~~~ 63 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE-----------------VLPGHGLQTVS---RKLL-GEVC 63 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-----------------hcCcccccccc---hhhc-ccCC
Confidence 489999876553 223 33555668888988877543211 00000000000 1111 1358
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
|.+++.||.|.- ++.++.+...+.||.+|-.|-
T Consensus 64 d~vi~~GGDGt~--------l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 64 DLVIVVGGDGSL--------LGAARALARHNVPVLGINRGR 96 (295)
T ss_pred CEEEEEeCcHHH--------HHHHHHhcCCCCCEEEEeCCc
Confidence 999999997643 233455556788999999874
No 302
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=71.70 E-value=18 Score=30.18 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=41.3
Q ss_pred CcCCCCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC----------cccCCeeEecCCC
Q 016237 77 TFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----------DVVKGRKCTAYPP 146 (392)
Q Consensus 77 ~~~~~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a----------gll~g~~~T~~~~ 146 (392)
+.+++...+++.++|.-|.|... +..--.+-++++ ....|+.++|.|.+.+-++ +++.||.--.|.+
T Consensus 55 TV~El~~~NP~~LliSPGPG~P~--DsGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D 131 (223)
T KOG0026|consen 55 TVEELKRKNPRGLLISPGPGTPQ--DSGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYD 131 (223)
T ss_pred cHHHHhhcCCCeEEecCCCCCCc--cccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccC
Confidence 34455555678888877766432 233334445544 4467899999999887654 3566665555444
No 303
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=71.38 E-value=24 Score=29.03 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=45.7
Q ss_pred chhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhcc
Q 016237 215 YEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLA 294 (392)
Q Consensus 215 ~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~ 294 (392)
.++...+..|.+.|+.+++++++. +.++|++||+|... .
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~~~~------------------------------------~l~~y~~vi~P~~~-----~ 64 (154)
T cd03143 26 DLALALYRALRELGIPVDVVPPDA------------------------------------DLSGYKLVVLPDLY-----L 64 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC------------------------------------CcccCCEEEECchh-----c
Confidence 467778888999998888886421 11379999999843 2
Q ss_pred CChHHHHHHHHHHHcCCcEEEE
Q 016237 295 LNENVIALVKDFMEAKKPVASI 316 (392)
Q Consensus 295 ~~~~l~~~l~~~~~~g~~i~ai 316 (392)
.+++..+.|+++.++|..+.+-
T Consensus 65 ~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 65 LSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEe
Confidence 3568899999999999866653
No 304
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.28 E-value=28 Score=32.12 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=52.1
Q ss_pred CEEEEEecCCCC-cc-chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYME-DY-EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~~-~~-e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
|||+|+.-.+-. .. .+....+.|++.|+++.+....... . +. .. .....+....++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~----------------~----~~-~~-~~~~~~~~~~~~ 58 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEH----------------L----PE-FS-EEDVLPLEEMDV 58 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------c----Cc-cc-ccccccccccCC
Confidence 479999776542 22 3445666788899998886432110 0 00 00 000111122368
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
|.+++.||.|+. ++.++ .+..+.||.+|-.|..
T Consensus 59 d~vi~iGGDGTl--------L~a~~-~~~~~~pi~gIn~G~l 91 (277)
T PRK03708 59 DFIIAIGGDGTI--------LRIEH-KTKKDIPILGINMGTL 91 (277)
T ss_pred CEEEEEeCcHHH--------HHHHH-hcCCCCeEEEEeCCCC
Confidence 999999997753 23344 5566899999998763
No 305
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=71.26 E-value=8.9 Score=34.27 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=44.1
Q ss_pred CCccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237 84 SKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl 135 (392)
.+.+.||+.||...+. ...|.++.+-|++.+++|..+++...|+.++...=+
T Consensus 105 ~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~~mi 158 (293)
T COG4242 105 ENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSDHMI 158 (293)
T ss_pred HhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCCceE
Confidence 4789999999976543 567899999999999999999999999998876533
No 306
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=70.10 E-value=8.6 Score=38.16 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=32.3
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHc--CCcEEEEehHHHHHHHc
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEA--KKPVASICHGQQILAAA 326 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~--g~~i~aiC~G~~~La~a 326 (392)
..||+++|.-|+|... -++-+..+.+.... ..||.+||.|-+.|+-+
T Consensus 63 ~~FDaIVVgPGPG~P~---~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~ 111 (767)
T KOG1224|consen 63 VAFDAIVVGPGPGSPM---CAADIGICLRLLLECRDIPILGICLGFQALGLV 111 (767)
T ss_pred cccceEEecCCCCCCC---cHHHHHHHHHHHHhcCCCceeeeehhhHhHhhh
Confidence 4699999977777432 23334444444444 48999999999988754
No 307
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.29 E-value=41 Score=31.30 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=51.9
Q ss_pred CCEEEEEecCCCC-ccch-HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 8 KRSVLLLCGDYME-DYEA-MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~-~~e~-~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
+++|+|+.-++-. ..++ ....+.|.+.|+++.+...... .. +..........+. ..+
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~----------------~~----~~~~~~~~~~~~~-~~~ 63 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH----------------EL----QLKNVKTGTLAEI-GQQ 63 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh----------------hc----Ccccccccchhhc-CCC
Confidence 6789999865443 2233 3455568788988776432211 00 0000000011222 235
Q ss_pred ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
+|.+++-||.|+. ++..+.+...+.||.+|..|-
T Consensus 64 ~d~vi~lGGDGT~--------L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 64 ADLAIVVGGDGNM--------LGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCEEEEECCcHHH--------HHHHHHhcCCCCeEEEEECCC
Confidence 8999999997753 344455555678999999876
No 308
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.65 E-value=26 Score=32.83 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=53.4
Q ss_pred CCccEEEEeCCCCCc--chhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237 200 SDKRILFLCGDYMED--YEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS 277 (392)
Q Consensus 200 ~~~~v~ill~~~~~~--~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 277 (392)
+++++.++..++... ..+....+.|++.|+++.+....... .+. . . .......
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~--------------------~~~--~--~-~~~~~~~ 56 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKD--------------------NPY--P--V-FLASASE 56 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhh--------------------ccc--c--c-hhhcccc
Confidence 456678877765432 12444566788889887776543110 000 0 0 1111123
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEeh-HH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICH-GQ 320 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~-G~ 320 (392)
.+|++++-||.| .+++.++.+...+.|+.+|-. |.
T Consensus 57 ~~d~vi~~GGDG--------T~l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 57 LIDLAIVLGGDG--------TVLAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred CcCEEEEECCcH--------HHHHHHHHhccCCCCEEEEecCCc
Confidence 689999999866 455666666677899999987 54
No 309
>PRK05569 flavodoxin; Provisional
Probab=67.86 E-value=35 Score=27.47 Aligned_cols=85 Identities=8% Similarity=0.047 Sum_probs=47.1
Q ss_pred CEEEEEecCCCCcc-chH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYMEDY-EAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~~~~-e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
+||+|+-+...--+ .++ .+.+.+.+.|.++++...... ...+ ..+|
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~------------------------------~~~~--~~~~ 49 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA------------------------------KVED--VLEA 49 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC------------------------------CHHH--HhhC
Confidence 37877777554322 222 233555567888877665421 1123 3379
Q ss_pred cEEEEcCCC-CcccccCCHHHHHHHHHHH---hCCCeEEEEchh
Q 016237 87 DGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHG 126 (392)
Q Consensus 87 D~iiipGG~-~~~~~~~~~~l~~~l~~~~---~~~~~i~aic~G 126 (392)
|.|++.... +... ...+.+..++.+.. .++|.++.++++
T Consensus 50 d~iilgsPty~~~~-~~~~~~~~~~~~l~~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 50 DAVAFGSPSMDNNN-IEQEEMAPFLDQFKLTPNENKKCILFGSY 92 (141)
T ss_pred CEEEEECCCcCCCc-CChHHHHHHHHHhhccCcCCCEEEEEeCC
Confidence 999995531 1111 11245666666654 368888888864
No 310
>PRK03094 hypothetical protein; Provisional
Probab=66.70 E-value=22 Score=25.96 Aligned_cols=20 Identities=25% Similarity=-0.036 Sum_probs=16.4
Q ss_pred cchHHHHHHHHhCCCeEEEE
Q 016237 22 YEAMVPFQALLAFGVSVDAA 41 (392)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~ 41 (392)
..+....+.|++.||+|.-+
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l 27 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQL 27 (80)
T ss_pred cCcHHHHHHHHHCCCEEEec
Confidence 46788899999999987654
No 311
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.64 E-value=46 Score=31.19 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCEEEEEecCCCC-ccch-HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 8 KRSVLLLCGDYME-DYEA-MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~-~~e~-~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
++||+|+.-++-. ..++ ......|.+.|+++.+......... . . ......|..+..-....+. ..+
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-----~---~---~~~~~~~~~~~~~~~~~~~-~~~ 72 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLG-----A---T---HPAPDDFRAMEVVDADPDA-ADG 72 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhc-----c---c---ccccccccccccccchhhc-ccC
Confidence 4589999865543 2233 3455567788988877653211000 0 0 0000000000000000111 235
Q ss_pred ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
.|.+++-||.|+ ++...+.+..++.||.+|-.|..
T Consensus 73 ~D~vi~lGGDGT--------~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 73 CELVLVLGGDGT--------ILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred CCEEEEEcCCHH--------HHHHHHHhccCCCcEEEEecCCC
Confidence 899999999764 34455666678899999998753
No 312
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=64.94 E-value=29 Score=30.46 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
.+.||+||+....+.. -+++-.+-|+++.++|+.+.++..+.
T Consensus 50 L~~~Dvvv~~~~~~~~---l~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGDE---LTDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HCT-SEEEEE-SSCCG---S-HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred hcCCCEEEEECCCCCc---CCHHHHHHHHHHHHcCCCEEEEcccc
Confidence 4489999998765311 25677778888889999999998443
No 313
>PLN02204 diacylglycerol kinase
Probab=63.37 E-value=20 Score=36.75 Aligned_cols=85 Identities=14% Similarity=0.302 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCcCCCCccEEEEeCCCCC----cchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCcccc
Q 016237 183 PEFIRLFLKALGGTITGSDKRILFLCGDYME----DYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYS 258 (392)
Q Consensus 183 ~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~----~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~ 258 (392)
.....++...+..+. .+++++.+++.+..- .........+|++++++++++-..
T Consensus 142 ~~w~~~l~~~l~~~~-~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~--------------------- 199 (601)
T PLN02204 142 QSWVDRLNASLNKEV-GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTE--------------------- 199 (601)
T ss_pred HHHHHHHHHHHhhcc-CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEec---------------------
Confidence 345677777776554 567788877765221 122335677889999887766432
Q ss_pred CCCCCcccccccccCCCCCCcCEEEEcCCCCh
Q 016237 259 EKPGHNFTLTANFESVDVSGYDALVVPGGRAP 290 (392)
Q Consensus 259 ~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~ 290 (392)
..|.....-..+.+.....||.||..||.|.
T Consensus 200 -~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt 230 (601)
T PLN02204 200 -RAGHAFDVMASISNKELKSYDGVIAVGGDGF 230 (601)
T ss_pred -CcchHHHHHHHHhhhhccCCCEEEEEcCccH
Confidence 1122222222223323457999999999884
No 314
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=63.06 E-value=1.2e+02 Score=27.59 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCcCCCCccEEEEeCCCCC---------cchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCC
Q 016237 184 EFIRLFLKALGGTITGSDKRILFLCGDYME---------DYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGD 254 (392)
Q Consensus 184 ~~~~~~i~~l~~~~~~~~~~v~ill~~~~~---------~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~ 254 (392)
++..+|.+.... ..++|+++...+-. ...+......|++. |+|..+...
T Consensus 133 ~lt~aI~~v~~~----~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~----------------- 190 (271)
T PF09822_consen 133 ELTSAIRRVTSD----EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA----------------- 190 (271)
T ss_pred HHHHHHHHHhcc----cCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc-----------------
Confidence 445555444333 35567776654433 35778888888887 887666542
Q ss_pred ccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEE-EEehHHHHHHHcCCCCCce
Q 016237 255 QTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVA-SICHGQQILAAAGVLKGKK 333 (392)
Q Consensus 255 ~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~-aiC~G~~~La~aglL~g~~ 333 (392)
..++ ++++|+|+|+|-.. +-.+.-+..|.++..+|..+. ++-....-+. +......
T Consensus 191 ----------------~~~I-P~~~d~Lvi~~P~~----~ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~--~~~~~~~ 247 (271)
T PF09822_consen 191 ----------------NEEI-PDDADVLVIAGPKT----DLSEEELYALDQYLMNGGKLLILLDPFSVELQ--GLWAGGA 247 (271)
T ss_pred ----------------cccc-CCCCCEEEEECCCC----CCCHHHHHHHHHHHHcCCeEEEEECCcccccc--ccccccc
Confidence 1222 35789999988433 346777788888888876443 3333311111 1111111
Q ss_pred eecCchhHHHHHHcCCeeeCC
Q 016237 334 CTAYPAVKLNVLLAGASWLEP 354 (392)
Q Consensus 334 ~T~~~~~~~~~~~~~~~~~~~ 354 (392)
-..+.....+...|+.+.+.
T Consensus 248 -~~~~~L~~lL~~~Gi~~~~~ 267 (271)
T PF09822_consen 248 -QRDSNLNDLLEEYGIRINPG 267 (271)
T ss_pred -ccccCHHHHHHHcCCEeCCC
Confidence 11566777777888888753
No 315
>PRK06756 flavodoxin; Provisional
Probab=62.15 E-value=59 Score=26.48 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=49.1
Q ss_pred CEEEEEecCCCCccch-H-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYMEDYEA-M-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~-~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
+||+|+-+...--++. + .+.+.|++.|.++++......+ ...+ ..+|
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~-----------------------------~~~~--~~~~ 50 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSP-----------------------------EASI--LEQY 50 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccC-----------------------------CHHH--HhcC
Confidence 4788887655443332 2 3346677788888776553210 1122 3379
Q ss_pred cEEEEcCCC-CcccccCCHHHHHHHHHHH---hCCCeEEEEchhh
Q 016237 87 DGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHGQ 127 (392)
Q Consensus 87 D~iiipGG~-~~~~~~~~~~l~~~l~~~~---~~~~~i~aic~G~ 127 (392)
|.|++.... +... ..+.+..|+.+.. -++++++.+++|.
T Consensus 51 d~vi~gspt~~~g~--~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 51 DGIILGAYTWGDGD--LPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred CeEEEEeCCCCCCC--CcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 999885421 1111 1234777776653 3688888887754
No 316
>PLN02204 diacylglycerol kinase
Probab=59.76 E-value=11 Score=38.57 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=41.1
Q ss_pred CCCEEEEEecCCCC----ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCC
Q 016237 7 GKRSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (392)
Q Consensus 7 ~~~kI~ill~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (392)
++||++|++-|-.- .-.+......|.+++++++++-.... |.....-..+.+..
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a----------------------ghA~d~~~~~~~~~ 215 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA----------------------GHAFDVMASISNKE 215 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc----------------------chHHHHHHHHhhhh
Confidence 56899998876221 11233567788999998887654421 11111111122222
Q ss_pred CCCccEEEEcCCCCcc
Q 016237 83 PSKYDGLVIPGGRAPE 98 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~ 98 (392)
...||.||+.||.|.-
T Consensus 216 l~~~D~VVaVGGDGt~ 231 (601)
T PLN02204 216 LKSYDGVIAVGGDGFF 231 (601)
T ss_pred ccCCCEEEEEcCccHH
Confidence 3479999999999853
No 317
>PRK05568 flavodoxin; Provisional
Probab=59.48 E-value=71 Score=25.67 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=25.0
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHH--HcCCcEEEEeh
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFM--EAKKPVASICH 318 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~--~~g~~i~aiC~ 318 (392)
.+||.|++....-.........+.+++.+.. .++|.++.+|+
T Consensus 47 ~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 47 KGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred HhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 4799999865321111122345666666553 36888888887
No 318
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=58.57 E-value=55 Score=28.61 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=68.7
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCccccccc----ccCccccCcCcCCCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET----RGHNFALNATFDEIDP 83 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~ 83 (392)
.++|+|++.+|-+.-+=......|...|+.|+++-............. ..... .++.+.. ..+ .+
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~-------~~~~~l~~~~~v~~~~---~~~-~~ 117 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAAR-------ANLKSLGIGGVVKIKE---LED-EP 117 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHH-------HHHHhhcCCcceeecc---ccc-cc
Confidence 368999999999999999999999999999999886543211000000 00000 1111111 111 23
Q ss_pred CCccEEE----EcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237 84 SKYDGLV----IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135 (392)
Q Consensus 84 ~~~D~ii----ipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl 135 (392)
.++|+|| =.|..++ + .++....+....+++++|.|+-.=+-+-+.+|-
T Consensus 118 ~~~dvIVDalfG~G~~g~--l--rep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG~ 169 (203)
T COG0062 118 ESADVIVDALFGTGLSGP--L--REPFASLIEAINASGKPIVAVDIPSGLDADTGE 169 (203)
T ss_pred ccCCEEEEeceecCCCCC--C--ccHHHHHHHHHHhcCCceEEEeCCCCcCCCCCc
Confidence 3556554 2222222 1 256777788888999999999987766666663
No 319
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=58.38 E-value=83 Score=25.36 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=28.2
Q ss_pred CCCccEEEEcCC-CCcccccCCHHHHHHHHHHHhCCCeEEEEchh
Q 016237 83 PSKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (392)
Q Consensus 83 ~~~~D~iiipGG-~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G 126 (392)
..+||.|++... ++... ..+.+..|+++...++|.++.+|+|
T Consensus 48 ~~~~d~iilgs~t~~~g~--~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 48 PENYDLVFLGTWTWERGR--TPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhhCCEEEEEcCeeCCCc--CCHHHHHHHHHhcccCCEEEEEEcC
Confidence 347999999654 22111 2346888888876688888888865
No 320
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=57.12 E-value=5.2 Score=38.18 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=24.7
Q ss_pred CCCEEEEEecCCCCc-----cchHHHHHHHHhCCCeEEEECCCC
Q 016237 7 GKRSVLLLCGDYMED-----YEAMVPFQALLAFGVSVDAACPGK 45 (392)
Q Consensus 7 ~~~kI~ill~~g~~~-----~e~~~~~~~l~~ag~~v~~~s~~~ 45 (392)
++|||.|++-+..+- .=.-...-+|.-+|++|+++-.+.
T Consensus 59 ~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~ 102 (535)
T KOG4435|consen 59 RPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDN 102 (535)
T ss_pred ccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCc
Confidence 468999999652221 111333445667899999987763
No 321
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.49 E-value=84 Score=29.43 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=53.2
Q ss_pred CCEEEEEecCCCC-ccch-HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 8 KRSVLLLCGDYME-DYEA-MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~-~~e~-~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
|+||+|+.-++-. ..++ ....+.|.+.|+++.+......... .... . ......+ +.. ....+. ..+
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-----~~~~-~--~~~~~~~--~~~-~~~~~~-~~~ 68 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILG-----YANP-D--QPVCHTG--IDQ-LVPPGF-DSS 68 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcC-----cccc-c--ccccccc--ccc-cChhhc-ccC
Confidence 3589999765542 2233 3455567888998877543211000 0000 0 0000000 000 011121 125
Q ss_pred ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
.|.+++-||.|+ ++...+.+...+.||.+|-.|..
T Consensus 69 ~Dlvi~iGGDGT--------lL~aar~~~~~~iPilGIN~G~l 103 (305)
T PRK02649 69 MKFAIVLGGDGT--------VLSAARQLAPCGIPLLTINTGHL 103 (305)
T ss_pred cCEEEEEeCcHH--------HHHHHHHhcCCCCcEEEEeCCCC
Confidence 899999999764 44455666677999999988753
No 322
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.22 E-value=54 Score=30.23 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=49.5
Q ss_pred ccEEEEeCCCCC-cc-hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237 202 KRILFLCGDYME-DY-EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY 279 (392)
Q Consensus 202 ~~v~ill~~~~~-~~-e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 279 (392)
+|+.++...+.. .. ......+.|+..|+++.+....... .+ ... .....+....++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~--------------------~~-~~~-~~~~~~~~~~~~ 58 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEH--------------------LP-EFS-EEDVLPLEEMDV 58 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh--------------------cC-ccc-ccccccccccCC
Confidence 356776655432 22 2334566788889888886432110 00 000 000112222368
Q ss_pred CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
|++++-||.| .+++.++ ....+.||.++-.|.
T Consensus 59 d~vi~iGGDG--------TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 59 DFIIAIGGDG--------TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred CEEEEEeCcH--------HHHHHHH-hcCCCCeEEEEeCCC
Confidence 9999999876 3445555 556688999998886
No 323
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=54.24 E-value=23 Score=32.12 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=50.2
Q ss_pred CCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh
Q 016237 211 YMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP 290 (392)
Q Consensus 211 ~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~ 290 (392)
....+...-+-+.|...|+.+...+.-+...+ .+...+.... ..+|+||+.||.||
T Consensus 17 ~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~-----------------------~I~~~l~~a~-~r~D~vI~tGGLGP 72 (255)
T COG1058 17 RIVDTNAAFLADELTELGVDLARITTVGDNPD-----------------------RIVEALREAS-ERADVVITTGGLGP 72 (255)
T ss_pred ceecchHHHHHHHHHhcCceEEEEEecCCCHH-----------------------HHHHHHHHHH-hCCCEEEECCCcCC
Confidence 44556677888899999988887766543200 1111222222 34899999999986
Q ss_pred hh---------------ccCChHHHHHHHHHHHcC
Q 016237 291 EY---------------LALNENVIALVKDFMEAK 310 (392)
Q Consensus 291 ~~---------------~~~~~~l~~~l~~~~~~g 310 (392)
.. +..++..+++|++++.+.
T Consensus 73 T~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~r 107 (255)
T COG1058 73 THDDLTAEAVAKALGRPLVLDEEALAMIEEKYAKR 107 (255)
T ss_pred CccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHhc
Confidence 32 256789999999888653
No 324
>PRK09271 flavodoxin; Provisional
Probab=54.22 E-value=1.3e+02 Score=25.01 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=44.8
Q ss_pred EEEEEecCCCC-ccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 10 SVLLLCGDYME-DYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 10 kI~ill~~g~~-~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
||+|+-....- ...++ .+.+.|...|+++++....... + ..... +..+||
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~------------------------~--~~~~~--~~~~~d 53 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQT------------------------L--AEYPL--DPEDYD 53 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccccc------------------------c--ccccc--CcccCC
Confidence 67777654332 22333 3357778888888765443210 0 00011 233789
Q ss_pred EEEEcCC-CCcccccCCHHHHHHH---HHHHhCCCeEEEEchh
Q 016237 88 GLVIPGG-RAPEYLAMNDSVIDLV---RKFSNSGKTIASICHG 126 (392)
Q Consensus 88 ~iiipGG-~~~~~~~~~~~l~~~l---~~~~~~~~~i~aic~G 126 (392)
+|+|... .+...+ .+.+..|+ .....+++.++.+++|
T Consensus 54 ~vilgt~T~~~G~~--p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 54 LYLLGTWTDNAGRT--PPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred EEEEECcccCCCcC--CHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 9999662 221111 12344444 4433367878888775
No 325
>PRK13054 lipid kinase; Reviewed
Probab=54.03 E-value=16 Score=34.00 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=23.5
Q ss_pred CCEEEEEecCCCC-ccchHHHHHHHHhCCCeEEEECC
Q 016237 8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACP 43 (392)
Q Consensus 8 ~~kI~ill~~g~~-~~e~~~~~~~l~~ag~~v~~~s~ 43 (392)
|||+.|++-+... .-.+......|.++|+++++...
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t 39 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT 39 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe
Confidence 4678877765432 23455666778899988876443
No 326
>PRK11914 diacylglycerol kinase; Reviewed
Probab=52.01 E-value=27 Score=32.56 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCEEEEEecCCCC----ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237 8 KRSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (392)
Q Consensus 8 ~~kI~ill~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (392)
++|++|++-|..- .-.+....+.|++.|+++.++..... . ....+ ..+...
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-~-------------------~~~~~-----a~~~~~ 62 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-H-------------------DARHL-----VAAALA 62 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-H-------------------HHHHH-----HHHHHh
Confidence 5789988866332 12233567788999998876554321 0 00001 111112
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
..+|.|++.||.|+-. +.+......+.+++-+=.|+
T Consensus 63 ~~~d~vvv~GGDGTi~--------evv~~l~~~~~~lgiiP~GT 98 (306)
T PRK11914 63 KGTDALVVVGGDGVIS--------NALQVLAGTDIPLGIIPAGT 98 (306)
T ss_pred cCCCEEEEECCchHHH--------HHhHHhccCCCcEEEEeCCC
Confidence 3589999999988543 11222334566777776666
No 327
>PRK13055 putative lipid kinase; Reviewed
Probab=51.83 E-value=21 Score=33.92 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=49.6
Q ss_pred CEEEEEecCCCC----ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS 84 (392)
Q Consensus 9 ~kI~ill~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 84 (392)
+|++|++-|..- .-.+......|+++|+++++......+.+ ...+. .+....
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~-------------------a~~~~-----~~~~~~ 58 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNS-------------------AKNEA-----KRAAEA 58 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCcc-------------------HHHHH-----HHHhhc
Confidence 588888876432 12345667888899998887544321100 00011 111123
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH-Hhhc
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILAA 132 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~-~La~ 132 (392)
.||.|++.||.|+-. ++.+-|.. .....+++-+=.|+. .+|+
T Consensus 59 ~~d~vvv~GGDGTl~-----evvngl~~-~~~~~~LgiiP~GTgNdfAr 101 (334)
T PRK13055 59 GFDLIIAAGGDGTIN-----EVVNGIAP-LEKRPKMAIIPAGTTNDYAR 101 (334)
T ss_pred CCCEEEEECCCCHHH-----HHHHHHhh-cCCCCcEEEECCCchhHHHH
Confidence 589999999988642 12222211 122345676666663 4444
No 328
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=50.69 E-value=97 Score=26.32 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=29.6
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHH--HcCCcEEEEehH
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFM--EAKKPVASICHG 319 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~--~~g~~i~aiC~G 319 (392)
..+||.||+.++--. -...+.+.+|+++.. -++|+++.+|.|
T Consensus 44 l~~yD~vIlGspi~~--G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 44 LSDYDRVVIGASIRY--GHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHCCEEEEECcccc--CCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 457999998664311 123578888887754 368999999988
No 329
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.48 E-value=1e+02 Score=28.60 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.7
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
++|.+++-||.|+ ++.-.+.+...+.||.+|-.|..
T Consensus 64 ~~dlvi~lGGDGT--------~L~aa~~~~~~~~PilGIN~G~l 99 (292)
T PRK01911 64 SADMVISIGGDGT--------FLRTATYVGNSNIPILGINTGRL 99 (292)
T ss_pred CCCEEEEECCcHH--------HHHHHHHhcCCCCCEEEEecCCC
Confidence 5899999999765 33455666667899999998863
No 330
>PRK06455 riboflavin synthase; Provisional
Probab=50.48 E-value=34 Score=28.38 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=51.2
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhC--CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK 85 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 85 (392)
++||+|+...-...-=+.+..+.|++. +.+++++..-| ...+.+....-.. ...
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPG---------------------a~ELP~aakkL~~---~~~ 56 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPG---------------------IKDLPVAAKKLIE---EEG 56 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCC---------------------HHHHHHHHHHHHh---cCC
Confidence 468999997533322358888999994 46666665433 1111122211122 236
Q ss_pred ccEEEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEE
Q 016237 86 YDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASI 123 (392)
Q Consensus 86 ~D~iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~ai 123 (392)
||+|+.-|--|.. .+..+....-+.+-....++||+-+
T Consensus 57 yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 57 CDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHIIEV 97 (155)
T ss_pred CCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEEEE
Confidence 9999998865321 1233344455555556667766654
No 331
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=50.24 E-value=59 Score=28.19 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=50.9
Q ss_pred CEEEEEecCCCCcc-c-hHHHHHHHHh-CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccc---cCcCcCCCC
Q 016237 9 RSVLLLCGDYMEDY-E-AMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA---LNATFDEID 82 (392)
Q Consensus 9 ~kI~ill~~g~~~~-e-~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~ 82 (392)
+||+|+-+...--. . .-...+.+.+ .|.+++++......+. .+....+.... +....++
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-- 66 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPE-------------EVAKKAGGKTDQAAPVATPDE-- 66 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCH-------------HHHHhcCCCcccCCCccCHHH--
Confidence 47999887654321 2 2234455555 7899988876432110 00000110000 0111333
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHh-------CCCeEEEEchh
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-------SGKTIASICHG 126 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~G 126 (392)
..++|.|++....- .-.-.+.+..|+.+.-. ++|+.+.++++
T Consensus 67 l~~aD~ii~gsPty--~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~ 115 (200)
T PRK03767 67 LADYDAIIFGTPTR--FGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTST 115 (200)
T ss_pred HHhCCEEEEEeccc--CCCchHHHHHHHHHhccccccCCccCCEEEEEEeC
Confidence 34799999844321 11234567777777532 36777777764
No 332
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=49.45 E-value=29 Score=28.49 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=30.6
Q ss_pred CcCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 278 GYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 278 ~~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
+.|+|++-||..... -..-+.+.+.+.+...++ |.++|-=. ++.++|
T Consensus 80 ~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms-~F~kag 127 (147)
T PF09897_consen 80 HPDVVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICFMS-MFEKAG 127 (147)
T ss_dssp -EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETT-HHHHTT
T ss_pred CCCEEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHH-HHHHcC
Confidence 489999999987433 234466677777665544 99999653 455555
No 333
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=49.24 E-value=1.9e+02 Score=25.63 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeE---ecCCCcHHHHH----HCC
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC---TAYPPVKPVLI----AAG 155 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~---T~~~~~~~~l~----~~~ 155 (392)
...+|+++|..- .| .....+|+.+ .+|+.++|.++...|. ..|||+ |+.+..+..++ .+|
T Consensus 67 ~~GvdaiiIaCf-------~D-Pgl~~~Re~~--~~PviGi~eAsv~~A~---~vgrrfsViTtt~rs~~il~~lv~~~g 133 (230)
T COG4126 67 EQGVDAIIIACF-------SD-PGLAAARERA--AIPVIGICEASVLAAL---FVGRRFSVITTTERSRPILEELVRSYG 133 (230)
T ss_pred ccCCcEEEEEec-------CC-hHHHHHHHHh--CCCceehhHHHHHHHH---HhcceEEEEecCcccHHHHHHHHHhcC
Confidence 345899999552 23 6777888887 7899999999988884 467775 45555544443 344
Q ss_pred CeEEcCCCcceeeecCceEecCCCCChHHH
Q 016237 156 ASWIEPETMAACVVDGNIITGATYEGHPEF 185 (392)
Q Consensus 156 ~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~ 185 (392)
-...... ..-.|....+=.++.+-.+-
T Consensus 134 ~s~~~~~---vrstdl~vL~l~~~~~~~~~ 160 (230)
T COG4126 134 LSRHCRS---VRSTDLPVLALEGPPEEAEA 160 (230)
T ss_pred ccccccc---eeeCCCCcccccCChHHHHH
Confidence 3322211 13346666666665554443
No 334
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=48.42 E-value=33 Score=28.11 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=53.1
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
..||.++-.+|+...=........|.-+.+.-++... . ++.++. ....+.|+++ +++....+.|
T Consensus 19 ~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~-d--------~e~a~~--l~~~~~Gmq~-----~~~~~~~~~D 82 (147)
T PF09897_consen 19 GEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDA-D--------LEKARK--LEVTDIGMQV-----LGEKKDPHPD 82 (147)
T ss_dssp -SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT----------GGG-EE--EEEETTEEE------EEEE--S-EE
T ss_pred CCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCC-C--------hhhhhe--eeccCccccc-----ccccCCCCCC
Confidence 5799999999988422222223333333455444322 1 111111 1233445443 2222222489
Q ss_pred EEEEcCCCCccccc-CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 88 GLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 88 ~iiipGG~~~~~~~-~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
+|++-||.+..... .-.++.+++.+..... |.++|- .-++.++|
T Consensus 83 ~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCF-ms~F~kag 127 (147)
T PF09897_consen 83 VVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICF-MSMFEKAG 127 (147)
T ss_dssp EEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEE-TTHHHHTT
T ss_pred EEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEeh-HHHHHHcC
Confidence 99999998643322 3346777777765444 999996 33445555
No 335
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=48.34 E-value=50 Score=28.69 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=25.0
Q ss_pred CccEEEEeCC-CCCcchhHHHHHHHHhcCCeEEEEcCC
Q 016237 201 DKRILFLCGD-YMEDYEVAVPFQSLQALECHVDAVCPK 237 (392)
Q Consensus 201 ~~~v~ill~~-~~~~~e~~~~~~~~~~~~~~v~~~s~~ 237 (392)
..++.+...+ .............|+..||++..+..+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 3455555444 455555677888999999998766543
No 336
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=48.22 E-value=1.3e+02 Score=31.23 Aligned_cols=76 Identities=11% Similarity=0.127 Sum_probs=52.3
Q ss_pred CcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh--
Q 016237 213 EDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP-- 290 (392)
Q Consensus 213 ~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~-- 290 (392)
...++.+.+|.|..+.++|+++|=+. + ..+ . -+++.|+||=.|-.+.
T Consensus 466 q~ysy~GvlE~LSG~p~dV~FisFdD------------------i--------~~~----g-i~~didViIN~G~a~ta~ 514 (719)
T TIGR02336 466 QTYSYYGILECLSGMPVEVEFISFDD------------------I--------LEH----G-IDSDIDVIINGGDADTAW 514 (719)
T ss_pred hhhhHHHHHHHhcCCCeeEEEecHHH------------------H--------hhc----C-CCcCCcEEEecCcccccc
Confidence 44567777788888888888887541 0 001 1 1246788887774432
Q ss_pred --hhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 291 --EYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 291 --~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
-....++++...|+++..+|.-+++++.-
T Consensus 515 SGG~~W~d~~~~~aLr~fV~~GGglIGVgDp 545 (719)
T TIGR02336 515 SGGDVWTNPKLVETVRAWVRGGGGFVGVGEP 545 (719)
T ss_pred cCccccCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 12467999999999999999988888764
No 337
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=47.70 E-value=30 Score=32.08 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCEEEEEe-cCCCCccchHHHHHHHHhCC--CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237 8 KRSVLLLC-GDYMEDYEAMVPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS 84 (392)
Q Consensus 8 ~~kI~ill-~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 84 (392)
+.||+||= .|.-..+|. ..+..|.... .+++++.+.... .-..+...--.-=.+++++...
T Consensus 35 pL~I~ILNLMP~K~~TE~-Q~lRlL~ntplqv~i~~~~~~sh~---------------~k~t~~~hl~~fY~~f~~ik~~ 98 (300)
T TIGR01001 35 PLEILILNLMPKKIETEN-QFLRLLSNSPLQVNITLLRTDSRK---------------SKNTPIEHLNKFYTTFEAVKDR 98 (300)
T ss_pred ceeEEEEecCCccHHHHH-HHHHHhcCCCCceEEEEEEecccc---------------CCCCCHHHHHHHhhCHHHHhcC
Confidence 56888874 343333333 3445554434 557777765432 0000111001111357777667
Q ss_pred CccEEEEcCCCC-c---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHH
Q 016237 85 KYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129 (392)
Q Consensus 85 ~~D~iiipGG~~-~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~ 129 (392)
.||++||.|..- . +....=+++.+.+.-.-.+-....-+|-|+..
T Consensus 99 ~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqA 147 (300)
T TIGR01001 99 KFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQA 147 (300)
T ss_pred CCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 899999999642 1 11222256777777777778888999999865
No 338
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=47.53 E-value=33 Score=34.25 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhC--CCeEEEEchhhHHhh
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS--GKTIASICHGQLILA 131 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~--~~~i~aic~G~~~La 131 (392)
..||+|+|.-|.|... .++-...+.+.... ..||.+||-|-+.|+
T Consensus 63 ~~FDaIVVgPGPG~P~---~a~d~gI~~rl~~~~~~iPilGICLGfQal~ 109 (767)
T KOG1224|consen 63 VAFDAIVVGPGPGSPM---CAADIGICLRLLLECRDIPILGICLGFQALG 109 (767)
T ss_pred cccceEEecCCCCCCC---cHHHHHHHHHHHHhcCCCceeeeehhhHhHh
Confidence 4699999977765332 23333344444443 599999999998776
No 339
>PRK05569 flavodoxin; Provisional
Probab=46.36 E-value=1.1e+02 Score=24.43 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=25.4
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHH---HcCCcEEEEehH
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFM---EAKKPVASICHG 319 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~---~~g~~i~aiC~G 319 (392)
.+||.|++....-.......+.+..++.++. -++|.++.++++
T Consensus 47 ~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 47 LEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSY 92 (141)
T ss_pred hhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCC
Confidence 4789999955311011111245666766654 368888888874
No 340
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=46.34 E-value=9.9 Score=31.73 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=27.9
Q ss_pred CCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEch
Q 016237 82 DPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (392)
Q Consensus 82 ~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~ 125 (392)
+.++||.|||.. .-+- -.-.+.+..||++..-+||.|+-.|+
T Consensus 70 d~~~YD~I~lG~-PvW~-~~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 70 DLSDYDTIFLGT-PVWW-GTPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp -GGG-SEEEEEE-EEET-TEE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred CcccCCEEEEec-hHHc-CCCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 456999999933 2111 12246799999988778999988886
No 341
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.62 E-value=1.2e+02 Score=28.04 Aligned_cols=89 Identities=20% Similarity=0.214 Sum_probs=52.5
Q ss_pred CCEEEEEecCCCCccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 8 KRSVLLLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
++||+|+.-++-...++. ...+.|.+.|+++.+-..... .. ...+ ....+. ..++
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~----------------~~-~~~~------~~~~~~-~~~~ 65 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE----------------IL-DLPG------YGLDEL-FKIS 65 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh----------------hh-cccc------cchhhc-ccCC
Confidence 568999987653333333 334457678887766432211 00 0001 011222 1368
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
|.+|+-||.|+ +++..+.+...+.||.+|-.|..
T Consensus 66 Dlvi~iGGDGT--------~L~aa~~~~~~~~PilGIN~G~l 99 (287)
T PRK14077 66 DFLISLGGDGT--------LISLCRKAAEYDKFVLGIHAGHL 99 (287)
T ss_pred CEEEEECCCHH--------HHHHHHHhcCCCCcEEEEeCCCc
Confidence 99999999764 34455666667999999988763
No 342
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=45.47 E-value=2.1e+02 Score=25.04 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
..++.++..+|-+.-+-...-..|...|+.|+++-...............+ +. ...+..+... ...+ .+..+|
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~---~~--l~~~~~v~~~-~~~~-~~~~~d 121 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANL---KS--LGIGGVVKIK-ELED-EPESAD 121 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHH---Hh--hcCCcceeec-cccc-ccccCC
Confidence 678999999999999999999999999999999876533210000000000 00 0000111111 1111 234667
Q ss_pred EEEEcC--CCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 281 ALVVPG--GRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 281 ~viipg--g~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
+||= + |.|... +..+.+...+....+++++|.|+-.=+-+-+.+|
T Consensus 122 vIVD-alfG~G~~g-~lrep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG 168 (203)
T COG0062 122 VIVD-ALFGTGLSG-PLREPFASLIEAINASGKPIVAVDIPSGLDADTG 168 (203)
T ss_pred EEEE-eceecCCCC-CCccHHHHHHHHHHhcCCceEEEeCCCCcCCCCC
Confidence 6652 2 222211 3457778888888899999999986655555555
No 343
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=45.11 E-value=2.5e+02 Score=27.37 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=34.8
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKS 47 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~ 47 (392)
+|+|++-+.-+............|.+.|++|+++-....+
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvmt~~a~ 43 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESAR 43 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEcchhhh
Confidence 4689999999988888899999999999999999887643
No 344
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=45.11 E-value=60 Score=33.63 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=55.1
Q ss_pred ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcc--
Q 016237 21 DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPE-- 98 (392)
Q Consensus 21 ~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~-- 98 (392)
..+..+.++.|+-+.++|+++|=+. + ..+ .+ +++.|+||=.|-.+..
T Consensus 467 ~ysy~GvlE~LSG~p~dV~FisFdD------------------i--------~~~----gi-~~didViIN~G~a~ta~S 515 (719)
T TIGR02336 467 TYSYYGILECLSGMPVEVEFISFDD------------------I--------LEH----GI-DSDIDVIINGGDADTAWS 515 (719)
T ss_pred hhhHHHHHHHhcCCCeeEEEecHHH------------------H--------hhc----CC-CcCCcEEEecCccccccc
Confidence 4678888999998999999998652 1 011 11 3467888888754422
Q ss_pred --cccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 99 --YLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 99 --~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
....++.+...|+++..+|.-+.+++.-.
T Consensus 516 GG~~W~d~~~~~aLr~fV~~GGglIGVgDps 546 (719)
T TIGR02336 516 GGDVWTNPKLVETVRAWVRGGGGFVGVGEPS 546 (719)
T ss_pred CccccCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 14578999999999999999888888643
No 345
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=43.72 E-value=9.2 Score=31.93 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCCcCEEEEcC--CCChhhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 275 DVSGYDALVVPG--GRAPEYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 275 ~~~~~D~viipg--g~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
+.++||.|||.. |.+ .....+..||++..-+||.|+.+|+-
T Consensus 70 d~~~YD~I~lG~PvW~~----~~~~pv~tFL~~~~~~gK~v~~F~T~ 112 (156)
T PF12682_consen 70 DLSDYDTIFLGTPVWWG----TPPPPVRTFLEQYDFSGKTVIPFCTS 112 (156)
T ss_dssp -GGG-SEEEEEEEEETT----EE-CHHHHHHHCTTTTTSEEEEEEE-
T ss_pred CcccCCEEEEechHHcC----CCCHHHHHHHHhcCCCCCcEEEEEee
Confidence 456899999943 323 34578889998877789999988863
No 346
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=43.57 E-value=3.6e+02 Score=28.03 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=37.6
Q ss_pred CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCC
Q 016237 280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLK 330 (392)
Q Consensus 280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~ 330 (392)
.++.|.|..++.. .++-...++.++..++...|.+..=|.+.++.+||.+
T Consensus 427 Gvv~ivGC~n~k~-~~d~~~v~lakeLik~DiLVLttGC~a~~~~k~Gl~~ 476 (613)
T cd01915 427 GVVGIVGCNNLKV-QQDSSHVTLAKELIKRNVLVLATGCGAGALAKAGLMD 476 (613)
T ss_pred ceEEEEeCCCCCC-CCccHHHHHHHHhccCCEEEEecchhhhhhhhcCCCC
Confidence 4566666666533 4555678889998899998888877888889999864
No 347
>PRK06703 flavodoxin; Provisional
Probab=41.89 E-value=84 Score=25.65 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCccc-hH-HHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYMEDYE-AM-VPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~~~e-~~-~~~~~l~~ag~~v~~~s~~ 44 (392)
+||.|+-+...--++ ++ .+.+.|...|+++++....
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 477777765443222 22 2335567778888776543
No 348
>PRK13337 putative lipid kinase; Reviewed
Probab=40.98 E-value=29 Score=32.42 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=49.8
Q ss_pred CEEEEEecCCCC----ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS 84 (392)
Q Consensus 9 ~kI~ill~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 84 (392)
+|+++++-|..- .-.+......|.++|+++++...... .+. ..+ ..++...
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~-~~a-------------------~~~-----a~~~~~~ 56 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGP-GDA-------------------TLA-----AERAVER 56 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCC-CCH-------------------HHH-----HHHHHhc
Confidence 588888866322 12344556678899998877654421 000 001 0111123
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHh--CCCeEEEEchhhH-HhhcC
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL-ILAAA 133 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~--~~~~i~aic~G~~-~La~a 133 (392)
.+|.|++.||.|+-. +.+..... ...+++-+=.|+. .+|+.
T Consensus 57 ~~d~vvv~GGDGTl~--------~vv~gl~~~~~~~~lgiiP~GT~NdfAr~ 100 (304)
T PRK13337 57 KFDLVIAAGGDGTLN--------EVVNGIAEKENRPKLGIIPVGTTNDFARA 100 (304)
T ss_pred CCCEEEEEcCCCHHH--------HHHHHHhhCCCCCcEEEECCcCHhHHHHH
Confidence 589999999988532 22222222 2346777777663 44443
No 349
>PRK09271 flavodoxin; Provisional
Probab=40.57 E-value=1.6e+02 Score=24.43 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=25.1
Q ss_pred CCcCEEEEcCC-CChhhcc-CChHHHHHHHHHHHcCCcEEEEehH
Q 016237 277 SGYDALVVPGG-RAPEYLA-LNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 277 ~~~D~viipgg-~~~~~~~-~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
.+||+|+|... .+...++ .-..+.++|+....++|.++.+++|
T Consensus 50 ~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 50 EDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred ccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 47899999662 2211222 1234445555444478888888876
No 350
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=40.46 E-value=1.8e+02 Score=22.73 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=43.6
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
|+|+|+-...-...=-...+..|.+.|+++..+.++.+. -.|.+. -.++.+. +...|.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-------------------i~G~~~--y~sl~e~-p~~iDl 58 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-------------------ILGIKC--YPSLAEI-PEPIDL 58 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-------------------ETTEE---BSSGGGC-SST-SE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-------------------ECcEEe--eccccCC-CCCCCE
Confidence 578888754322222345667777899999999987642 122222 2235552 567888
Q ss_pred EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEE
Q 016237 89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121 (392)
Q Consensus 89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~ 121 (392)
++|.-. ...+.+++++..+.|..-+
T Consensus 59 avv~~~--------~~~~~~~v~~~~~~g~~~v 83 (116)
T PF13380_consen 59 AVVCVP--------PDKVPEIVDEAAALGVKAV 83 (116)
T ss_dssp EEE-S---------HHHHHHHHHHHHHHT-SEE
T ss_pred EEEEcC--------HHHHHHHHHHHHHcCCCEE
Confidence 888431 2445666666666554333
No 351
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=40.43 E-value=2.9e+02 Score=25.17 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=100.4
Q ss_pred CEEEEEec-C-----CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCC
Q 016237 9 RSVLLLCG-D-----YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82 (392)
Q Consensus 9 ~kI~ill~-~-----g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (392)
+++.|+.- + ........-+.+.|.+.|+.+..+..-++..+ +|.. .+...
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~---------------------~I~~--~l~~a- 57 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPD---------------------RIVE--ALREA- 57 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHH---------------------HHHH--HHHHH-
Confidence 35666552 2 34556788889999999999988877654210 0111 11221
Q ss_pred CCCccEEEEcCCCCccc---------------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCccc-CCeeEecCCC
Q 016237 83 PSKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV-KGRKCTAYPP 146 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~---------------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll-~g~~~T~~~~ 146 (392)
..++|.||+.||.|+.. +..+++.+++|+++|.+-+ ...- ..|+.+-.|
T Consensus 58 ~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~r~--------------~~~~~~~~K~A~~P- 122 (255)
T COG1058 58 SERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEEALAMIEEKYAKRG--------------REMTEANRKQAMLP- 122 (255)
T ss_pred HhCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHhcC--------------CCCChhhhhhccCC-
Confidence 23599999999998632 1245677777777776543 0000 111111111
Q ss_pred cHHHHHHCCCeEEcCCCc--ceeeec---CceEecCCCCChHH-HHHHHHHHhcCCcCC-CCccEEEEeCCCCCcchhHH
Q 016237 147 VKPVLIAAGASWIEPETM--AACVVD---GNIITGATYEGHPE-FIRLFLKALGGTITG-SDKRILFLCGDYMEDYEVAV 219 (392)
Q Consensus 147 ~~~~l~~~~~~~~~~~~~--~~~v~d---g~iiT~~g~~s~~~-~~~~~i~~l~~~~~~-~~~~v~ill~~~~~~~e~~~ 219 (392)
.|+..++.+.. .-++++ -+++.--|+.+-+. |...++..+...... .....-.+.+.|..++.++.
T Consensus 123 -------~Ga~~l~NpvG~APG~~v~~~~~~v~~lPGvP~Em~~M~e~~~~~~l~~~~~~~~~~~~~~~~~gi~ES~la~ 195 (255)
T COG1058 123 -------EGAEVLDNPVGTAPGFVVEGNGKNVYVLPGVPSEMKPMFENVLLPLLTGRFPSTKYYSRVLRVFGIGESSLAP 195 (255)
T ss_pred -------CCCEeCCCCCCCCCeeEEecCCeEEEEeCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCChHHHHH
Confidence 23444333221 012222 26667767666554 555555544433222 23344555667788889999
Q ss_pred HHHHHHhcCCeEEEEcC
Q 016237 220 PFQSLQALECHVDAVCP 236 (392)
Q Consensus 220 ~~~~~~~~~~~v~~~s~ 236 (392)
+++-+....-.+.+.|.
T Consensus 196 ~L~~i~~~~~~~~i~s~ 212 (255)
T COG1058 196 TLKDLQDEQPNVTIASY 212 (255)
T ss_pred HHHHHHhcCCCCEEEec
Confidence 99988886545555554
No 352
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.82 E-value=33 Score=31.66 Aligned_cols=37 Identities=5% Similarity=-0.107 Sum_probs=24.7
Q ss_pred CCEEEEEecC--CCC--ccchHHHHHHHHhCCCeEEEECCC
Q 016237 8 KRSVLLLCGD--YME--DYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 8 ~~kI~ill~~--g~~--~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
|+|++|+.-+ |.. ...+......|.+.|+++.+....
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~ 41 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW 41 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3589998877 432 122445667788899988876654
No 353
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.96 E-value=23 Score=27.64 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=27.2
Q ss_pred EEEEEecC-CCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 10 SVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 10 kI~ill~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
|+.+...+ ......+..+...|+++|++|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 45555554 455789999999999999999998654
No 354
>PRK11914 diacylglycerol kinase; Reviewed
Probab=38.81 E-value=67 Score=29.91 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=20.8
Q ss_pred CCccEEEEeCCCCCc----chhHHHHHHHHhcCCeEEEEcC
Q 016237 200 SDKRILFLCGDYMED----YEVAVPFQSLQALECHVDAVCP 236 (392)
Q Consensus 200 ~~~~v~ill~~~~~~----~e~~~~~~~~~~~~~~v~~~s~ 236 (392)
+|+++.+++.+..-. .......+.|++.|+++.++..
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t 47 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVG 47 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 456667666553321 1223456677777877765544
No 355
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=38.65 E-value=27 Score=34.10 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=34.4
Q ss_pred cccCCCCCCcCEEEEcCCCChhh---cc-CChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237 270 NFESVDVSGYDALVVPGGRAPEY---LA-LNENVIALVKDFMEAKKPVASICHGQQILAAA 326 (392)
Q Consensus 270 ~~~~~~~~~~D~viipgg~~~~~---~~-~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a 326 (392)
....+..-.|-.|||.||+..-+ .+ -++.+ ++-+.++.+||.|-++++.-
T Consensus 51 ~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~i-------f~~~vpvLGICYGmQ~i~~~ 104 (552)
T KOG1622|consen 51 PAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAI-------FELGVPVLGICYGMQLINKL 104 (552)
T ss_pred hhhhhhcCCceEEEEeCCCCccccCcCCCCChhH-------hccCCcceeehhHHHHHHHH
Confidence 34444445789999999986433 22 23443 44579999999999999875
No 356
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.32 E-value=2e+02 Score=29.60 Aligned_cols=107 Identities=9% Similarity=0.083 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCcCCCCccEEEEeCCCCC-cchh-HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCC
Q 016237 185 FIRLFLKALGGTITGSDKRILFLCGDYME-DYEV-AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG 262 (392)
Q Consensus 185 ~~~~~i~~l~~~~~~~~~~v~ill~~~~~-~~e~-~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (392)
+...+++.+...-..+.+++.++...+.. ..++ ....+.|.+.+.++.+-...... +.....
T Consensus 274 l~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~----------------~~~~~~ 337 (569)
T PRK14076 274 LHKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNK----------------LKNRLN 337 (569)
T ss_pred HHHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhh----------------hccccc
Confidence 45566666655555567788888765432 2222 23455566777776665322110 000000
Q ss_pred CcccccccccCCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 263 HNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 263 ~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
. ... ...+ ..+.|++|+-||.| .++...+.+...+.||.+|-.|.
T Consensus 338 -~-~~~-~~~~--~~~~dlvi~lGGDG--------T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 338 -E-ECN-LIDD--IEEISHIISIGGDG--------TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred -c-ccc-cccc--ccCCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 0 000 0111 12579999999866 45666667767789999998886
No 357
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=38.14 E-value=22 Score=34.72 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=32.3
Q ss_pred cCCCCCCCccEEEEcCCCCc---cc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237 78 FDEIDPSKYDGLVIPGGRAP---EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132 (392)
Q Consensus 78 ~~~~~~~~~D~iiipGG~~~---~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 132 (392)
...+....|-.|||.||... +. -..++.+ +.=+.++.+||.|.++++.
T Consensus 52 ~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~i-------f~~~vpvLGICYGmQ~i~~ 103 (552)
T KOG1622|consen 52 AKTITEYGPRGIIISGGPNSVYAEDAPSFDPAI-------FELGVPVLGICYGMQLINK 103 (552)
T ss_pred hhhhhcCCceEEEEeCCCCccccCcCCCCChhH-------hccCCcceeehhHHHHHHH
Confidence 33333346889999999632 22 2234444 4447999999999999985
No 358
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=37.96 E-value=1.5e+02 Score=26.12 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237 218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE 297 (392)
Q Consensus 218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~ 297 (392)
....+.|++.||+|++.+.+. +...+.+..+.+||+||.=+-.+... -++
T Consensus 26 ~~~~~~L~~~gf~V~~~~~~d----------------------------~~~~~~~~~L~~~D~lV~~~~~~~~~--l~~ 75 (215)
T cd03142 26 GTIAAALAEYGFDVQTATLDE----------------------------PEHGLTEEVLAETDVLLWWGHIAHDE--VKD 75 (215)
T ss_pred HHHHHHHHhcCcEEEEEeccC----------------------------ccccCCHhHHhcCCEEEEeCCCCcCc--CCH
Confidence 445667888899998665431 11123333456899999733222112 245
Q ss_pred HHHHHHHHHHHcCCcEEEEehHH
Q 016237 298 NVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 298 ~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
+..+-++++.++|.=++++-.|.
T Consensus 76 eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 76 EIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HHHHHHHHHHHcCCCEEEECCCc
Confidence 66667777888888777776554
No 359
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=37.79 E-value=57 Score=29.51 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=30.2
Q ss_pred CCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 81 IDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 81 ~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
.++.++|.+++-||.|. +++.++.+...+.||.+|-.|.
T Consensus 21 ~~~~~~Dlvi~iGGDGT--------lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 21 VPIEEADVIVALGGDGF--------MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CCcccCCEEEEECCCHH--------HHHHHHHhcCCCCeEEEEeCCC
Confidence 34567999999999764 4455666677789999999885
No 360
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=37.73 E-value=59 Score=24.41 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=26.7
Q ss_pred CEEEEEecCCCCccch--HHHHHHHHhCCCeEEEECC
Q 016237 9 RSVLLLCGDYMEDYEA--MVPFQALLAFGVSVDAACP 43 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~--~~~~~~l~~ag~~v~~~s~ 43 (392)
+||++++..|....-+ ....+.|.+.|+++++...
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~ 39 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQC 39 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 4899999999875555 4555888889998887663
No 361
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=37.55 E-value=2e+02 Score=29.88 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=58.8
Q ss_pred cCCcCC-CCccEEEEeCC----------------CCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCcc
Q 016237 194 GGTITG-SDKRILFLCGD----------------YMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQT 256 (392)
Q Consensus 194 ~~~~~~-~~~~v~ill~~----------------~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~ 256 (392)
.+.... ...||+||-.- .....++.+.+|.|....++|+++|=+.
T Consensus 427 ~g~~p~~~~~kVAvLn~WGklRsW~~~~v~Hal~ykq~ysy~GilEaLSGlp~dV~FISFdD------------------ 488 (716)
T PF09508_consen 427 KGTKPYKCPFKVAVLNSWGKLRSWQCHMVAHALYYKQIYSYIGILEALSGLPFDVEFISFDD------------------ 488 (716)
T ss_dssp TT------SSEEEEEESSGGGGTTTTT-SSTT---TTTHHHHHHHHHHHTSSSEEEEEEHHH------------------
T ss_pred CCCCcccccceEEEeechhhhchhhhcccccccchhhhhhHHHHHHHhcCCCceeEEecHHH------------------
Confidence 344434 46788888733 2233578889999999999999998641
Q ss_pred ccCCCCCcccccccccCCCCCCcCEEEEcCCCCh----hhccCChHHHHHHHHHHHcCCcEEEEeh
Q 016237 257 YSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP----EYLALNENVIALVKDFMEAKKPVASICH 318 (392)
Q Consensus 257 ~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~----~~~~~~~~l~~~l~~~~~~g~~i~aiC~ 318 (392)
+..+ . -+++.|+||=.|-.+. -....++++...||++..+|.-.++++.
T Consensus 489 --------i~~~----g-i~~didViINaGdA~TA~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGE 541 (716)
T PF09508_consen 489 --------IREN----G-ILEDIDVIINAGDAGTAWSGGENWKDPKIVTALREFVYNGGGFIGVGE 541 (716)
T ss_dssp --------HHHH------S-TT--EEEEEESTTSTTT-GGGGG-HHHHHHHHHHHHTT-EEEEEES
T ss_pred --------Hhhc----C-CcccCCEEEecCcccccccCccccCCHHHHHHHHHHHHcCCCEEEcCC
Confidence 1111 1 1246788888774432 1247899999999999999988888864
No 362
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=37.38 E-value=53 Score=32.96 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=38.6
Q ss_pred CCCEEEEEecCCC---Cccch-H-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCC
Q 016237 7 GKRSVLLLCGDYM---EDYEA-M-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (392)
Q Consensus 7 ~~~kI~ill~~g~---~~~e~-~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (392)
++||++|++-|.. ..... . .....|+++|+++++.-.... ++ ...+. .++
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-gh-------------------A~~la-----~~~ 164 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ-LH-------------------AKEVV-----RTM 164 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc-cH-------------------HHHHH-----HHh
Confidence 4689998886622 11222 2 244588899998887654421 00 00111 111
Q ss_pred CCCCccEEEEcCCCCcc
Q 016237 82 DPSKYDGLVIPGGRAPE 98 (392)
Q Consensus 82 ~~~~~D~iiipGG~~~~ 98 (392)
....||.|++.||.|.-
T Consensus 165 ~~~~~D~VV~vGGDGTl 181 (481)
T PLN02958 165 DLSKYDGIVCVSGDGIL 181 (481)
T ss_pred hhcCCCEEEEEcCCCHH
Confidence 22369999999998864
No 363
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.32 E-value=1.9e+02 Score=27.12 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=28.6
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
+.|++++-||.| .+++..+.+...+.||.+|-.|.
T Consensus 68 ~~Dlvi~iGGDG--------TlL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 68 SMKFAIVLGGDG--------TVLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred CcCEEEEEeCcH--------HHHHHHHHhcCCCCcEEEEeCCC
Confidence 579999999866 56667777777889999998875
No 364
>PRK13054 lipid kinase; Reviewed
Probab=36.92 E-value=54 Score=30.50 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=8.6
Q ss_pred cCEEEEcCCCCh
Q 016237 279 YDALVVPGGRAP 290 (392)
Q Consensus 279 ~D~viipgg~~~ 290 (392)
.-+-+||+|.+.
T Consensus 85 ~~lgiiP~GTgN 96 (300)
T PRK13054 85 PALGILPLGTAN 96 (300)
T ss_pred CcEEEEeCCcHh
Confidence 457788888764
No 365
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.80 E-value=39 Score=31.76 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=32.1
Q ss_pred CccEEEEcCCCCc-cc--ccCCHHHHHHHHHHHhCCCe-EEEEchhhH-HhhcCcccCCeeEecCCC
Q 016237 85 KYDGLVIPGGRAP-EY--LAMNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYPP 146 (392)
Q Consensus 85 ~~D~iiipGG~~~-~~--~~~~~~l~~~l~~~~~~~~~-i~aic~G~~-~La~agll~g~~~T~~~~ 146 (392)
.||+|+|.=|-|. ++ ..+++.+. +..++...| |.||+|-.- .|+ .+...+++.|+..
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~va---rai~~~~~PvisaIGHe~D~ti~--D~vAd~ra~TPta 136 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVA---RAIAASPIPVISAIGHETDFTIA--DFVADLRAPTPTA 136 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHH---HHHHhCCCCEEEecCCCCCchHH--HHHHHhhCCCHHH
Confidence 6999999755443 33 23455554 444444555 788998552 222 3455556666443
No 366
>PRK13055 putative lipid kinase; Reviewed
Probab=36.75 E-value=64 Score=30.58 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=18.7
Q ss_pred CccEEEEeCCCCCc----chhHHHHHHHHhcCCeEEEEc
Q 016237 201 DKRILFLCGDYMED----YEVAVPFQSLQALECHVDAVC 235 (392)
Q Consensus 201 ~~~v~ill~~~~~~----~e~~~~~~~~~~~~~~v~~~s 235 (392)
|+++.+++.+..-. .........|++.++++++..
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~ 40 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQ 40 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45666666553221 123345566777777766543
No 367
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=36.48 E-value=68 Score=33.08 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=61.5
Q ss_pred CCEEEEEecC----------------CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCc
Q 016237 8 KRSVLLLCGD----------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN 71 (392)
Q Consensus 8 ~~kI~ill~~----------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 71 (392)
+.||+||=.= --+..++.++++.|+-..++|+++|=+. +.
T Consensus 435 ~~kVAvLn~WGklRsW~~~~v~Hal~ykq~ysy~GilEaLSGlp~dV~FISFdD------------------i~------ 490 (716)
T PF09508_consen 435 PFKVAVLNSWGKLRSWQCHMVAHALYYKQIYSYIGILEALSGLPFDVEFISFDD------------------IR------ 490 (716)
T ss_dssp SSEEEEEESSGGGGTTTTT-SSTT---TTTHHHHHHHHHHHTSSSEEEEEEHHH------------------HH------
T ss_pred cceEEEeechhhhchhhhcccccccchhhhhhHHHHHHHhcCCCceeEEecHHH------------------Hh------
Confidence 5799998732 1123678999999999999999998652 11
Q ss_pred cccCcCcCCCCCCCccEEEEcCCCCcc----cccCCHHHHHHHHHHHhCCCeEEEEchhhHH
Q 016237 72 FALNATFDEIDPSKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129 (392)
Q Consensus 72 ~~~~~~~~~~~~~~~D~iiipGG~~~~----~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~ 129 (392)
.+ .+ +++.|+||=.|-.+.. .-..++++...|+++..+|.-.++|+.-+..
T Consensus 491 --~~----gi-~~didViINaGdA~TA~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGEPsA~ 545 (716)
T PF09508_consen 491 --EN----GI-LEDIDVIINAGDAGTAWSGGENWKDPKIVTALREFVYNGGGFIGVGEPSAH 545 (716)
T ss_dssp --HH-----S--TT--EEEEEESTTSTTT-GGGGG-HHHHHHHHHHHHTT-EEEEEESTEEE
T ss_pred --hc----CC-cccCCEEEecCcccccccCccccCCHHHHHHHHHHHHcCCCEEEcCCCccc
Confidence 11 11 3468899888854422 1467999999999999999999999875443
No 368
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=36.24 E-value=88 Score=28.87 Aligned_cols=89 Identities=18% Similarity=0.329 Sum_probs=53.1
Q ss_pred CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCC--CCCCcCEEEEcCCCChhhccCChHHHHHHHHH
Q 016237 229 CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESV--DVSGYDALVVPGGRAPEYLALNENVIALVKDF 306 (392)
Q Consensus 229 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~ 306 (392)
++|++++|--..++..+-.++. -+-+.+.|.++++...+.+. ..++..+|+|.||.|.. +....+.+.|++.
T Consensus 228 ~NvRIAtPPp~~~~~PpG~mSS----yi~sLKpGDKvtisGPfGEfFaKdtdaemvFigGGAGma--pmRSHIfDqL~rl 301 (410)
T COG2871 228 LNVRIATPPPRNPDAPPGQMSS----YIWSLKPGDKVTISGPFGEFFAKDTDAEMVFIGGGAGMA--PMRSHIFDQLKRL 301 (410)
T ss_pred EEEEeccCCCCCCCCCccceee----eEEeecCCCeEEEeccchhhhhccCCCceEEEecCcCcC--chHHHHHHHHHhh
Confidence 7889998864433332222210 11234566667777666553 33567899999988842 2345677888877
Q ss_pred HHcCCcEEEEehHHHHHHH
Q 016237 307 MEAKKPVASICHGQQILAA 325 (392)
Q Consensus 307 ~~~g~~i~aiC~G~~~La~ 325 (392)
|.+. -.....|+.-+-+
T Consensus 302 hSkR--kis~WYGARS~rE 318 (410)
T COG2871 302 HSKR--KISFWYGARSLRE 318 (410)
T ss_pred cccc--eeeeeeccchHHH
Confidence 7544 4567777654443
No 369
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=36.18 E-value=51 Score=27.62 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEch
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~ 125 (392)
..+||.|++..+ ...-.-++.+++||++.. +|-|+-+++
T Consensus 37 ~~~yD~i~lG~w--~d~G~~d~~~~~fl~~l~--~KkV~lF~T 75 (160)
T PF12641_consen 37 LEDYDLIFLGFW--IDKGTPDKDMKEFLKKLK--GKKVALFGT 75 (160)
T ss_pred CCCCCEEEEEcC--ccCCCCCHHHHHHHHHcc--CCeEEEEEe
Confidence 358999999554 333345789999999964 455555554
No 370
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.12 E-value=68 Score=25.28 Aligned_cols=28 Identities=14% Similarity=-0.097 Sum_probs=20.7
Q ss_pred CCCCcchhHHHHHHHHhcCCeEEEEcCC
Q 016237 210 DYMEDYEVAVPFQSLQALECHVDAVCPK 237 (392)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~~ 237 (392)
..............|+..||++......
T Consensus 9 gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 9 LDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 3445555666778899999999888765
No 371
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=35.41 E-value=81 Score=23.28 Aligned_cols=70 Identities=26% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcEEEEehH-HHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEEc--CCeE---EccCCC
Q 016237 300 IALVKDFMEAKKPVASICHG-QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTD--GNLV---SGAAWP 373 (392)
Q Consensus 300 ~~~l~~~~~~g~~i~aiC~G-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~d--g~lv---T~~g~~ 373 (392)
.+++++.+.+...+..+|.- ..+=.-+.+|++|. .+|. .++.| |+.+ .++-..
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~-----------~DPa----------Vvvvde~g~~vIplL~GH~G 60 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKD-----------TDPA----------VVVVDEDGRFVIPLLGGHRG 60 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TT-----------T--E----------EEEE-TT--EEEEEE-TTTT
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccC-----------CCCC----------EEEEeCCCCEEEEeccCCcc
Confidence 46788888888888888754 34444455666543 1122 23333 4433 444444
Q ss_pred ChHHHHHHHHHHhcccc
Q 016237 374 GHPEFISQLMALLGIQV 390 (392)
Q Consensus 374 ~~~~~~~~li~~l~~~~ 390 (392)
.+.+++..+.+.+++++
T Consensus 61 Gan~lA~~iA~~lga~~ 77 (84)
T PF11760_consen 61 GANELARQIAELLGAQP 77 (84)
T ss_dssp -HHHHHHHHHHHTT-EE
T ss_pred hHHHHHHHHHHHhCCEE
Confidence 58999999999998765
No 372
>PRK13059 putative lipid kinase; Reviewed
Probab=35.26 E-value=44 Score=31.01 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=23.9
Q ss_pred CEEEEEecCCCC----ccchHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
+|+.|++-|..- ..++....+.|.++|+++.+....
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~ 41 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRIS 41 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEcc
Confidence 578887765322 234456778889999988765544
No 373
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.18 E-value=81 Score=24.68 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=31.0
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
+-|++|+.+-.| .++++.++++.+.++|.++.+++..
T Consensus 47 ~~d~vi~iS~sG-----~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 47 PGDVVIAISNSG-----ETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458888877555 5789999999999999999999875
No 374
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=35.03 E-value=1.2e+02 Score=26.33 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=46.7
Q ss_pred ccEEEEeC-CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237 202 KRILFLCG-DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD 280 (392)
Q Consensus 202 ~~v~ill~-~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 280 (392)
.++.+... .............+|+..||+|..++.+- ++..-.+.+...++|
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v---------------------------p~e~~v~~~~~~~pd 137 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV---------------------------PIDTVVEKVKKEKPL 137 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC---------------------------CHHHHHHHHHHcCCC
Confidence 45544443 35666677778889999999999887651 112222223334689
Q ss_pred EEEEcCCCChhhccCChHHHHHHHHHHHcC
Q 016237 281 ALVVPGGRAPEYLALNENVIALVKDFMEAK 310 (392)
Q Consensus 281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g 310 (392)
+|.+..-.. ...+.+.++++...+.+
T Consensus 138 ~v~lS~~~~----~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 138 MLTGSALMT----TTMYGQKDINDKLKEEG 163 (197)
T ss_pred EEEEccccc----cCHHHHHHHHHHHHHcC
Confidence 998866333 22344555666555553
No 375
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=34.95 E-value=50 Score=29.88 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=31.7
Q ss_pred CCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 273 SVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 273 ~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
..++.++|++++-||.| .+++.++.+...+.||.+|-.|.
T Consensus 20 ~~~~~~~Dlvi~iGGDG--------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 20 DVPIEEADVIVALGGDG--------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CCCcccCCEEEEECCCH--------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 34556789999999866 56677777777889999998885
No 376
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.92 E-value=83 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=30.7
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
+|++|++.||...-++..+...|+.+|..+-.++..
T Consensus 107 ~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 107 PQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred CeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 589999999998888999999999999877666553
No 377
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.78 E-value=2.2e+02 Score=22.18 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237 218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE 297 (392)
Q Consensus 218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~ 297 (392)
...+..|.+.||++..+.++.+. + .| +....++++. +...|++++.- ..+
T Consensus 17 ~~v~~~l~~~G~~v~~Vnp~~~~----------------i---~G--~~~y~sl~e~-p~~iDlavv~~--------~~~ 66 (116)
T PF13380_consen 17 YRVLRNLKAAGYEVYPVNPKGGE----------------I---LG--IKCYPSLAEI-PEPIDLAVVCV--------PPD 66 (116)
T ss_dssp HHHHHHHHHTT-EEEEESTTCSE----------------E---TT--EE-BSSGGGC-SST-SEEEE-S---------HH
T ss_pred HHHHHHHHhCCCEEEEECCCceE----------------E---Cc--EEeeccccCC-CCCCCEEEEEc--------CHH
Confidence 33666677789999999988653 1 12 3344566663 56889988833 345
Q ss_pred HHHHHHHHHHHcCCcEEEEehH
Q 016237 298 NVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 298 ~l~~~l~~~~~~g~~i~aiC~G 319 (392)
.+.++++++.+.|..-+-+..|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHHHcCCCEEEEEcc
Confidence 6777788877777554444444
No 378
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=34.70 E-value=2.1e+02 Score=26.59 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=27.8
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
.+|++|.-||.| .+++.++.+...+.|+.+|-.|.
T Consensus 63 ~~d~vi~~GGDG--------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 63 RADLAVVLGGDG--------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 689999999866 45666776666788999998876
No 379
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=34.70 E-value=54 Score=26.61 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=28.0
Q ss_pred CCCCccEEEEcCCCCcccccCCHHHHHHHHHHH--hCCCeEEEEchhh
Q 016237 82 DPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS--NSGKTIASICHGQ 127 (392)
Q Consensus 82 ~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~--~~~~~i~aic~G~ 127 (392)
+..+||.||+.++--.. .-.+.+.+|+++.. -+++.++.++.|.
T Consensus 40 ~~~~yD~vi~gspiy~g--~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYAG--RIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred ccccCCEEEEEEEEECC--cCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 34589999997653211 23567888998764 3566666665543
No 380
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.35 E-value=1e+02 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=27.9
Q ss_pred CEEEEEecC-CCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
.||.+...+ .............|+.+||+|..++.+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 467666655 356677788889999999999998876
No 381
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=34.28 E-value=62 Score=27.76 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=28.6
Q ss_pred CCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEeh
Q 016237 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICH 318 (392)
Q Consensus 275 ~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~ 318 (392)
++.++|+++|.|.... +....++.++++..+-|.|+|+++
T Consensus 71 sPr~aDvllV~G~vt~----~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 71 SPRQADLMIVAGTLTN----KMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCCceeEEEEEeCCCc----cchHHHHHHHHHcCcCCeEEEEec
Confidence 4567999999996532 245666666666677899998853
No 382
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=34.13 E-value=60 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.039 Sum_probs=26.5
Q ss_pred CCEEEEEecCC-CCccchHHHHHHHHhCCCeEEEECCC
Q 016237 8 KRSVLLLCGDY-MEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 8 ~~kI~ill~~g-~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
.+||.+...+| ............|+.+||+|..++.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 35777666664 34455777888999999999777654
No 383
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=34.05 E-value=64 Score=27.58 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=30.6
Q ss_pred CCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEeh
Q 016237 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICH 318 (392)
Q Consensus 275 ~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~ 318 (392)
++.++|+++|.|... .+....++.++++..+-|.|+|+++
T Consensus 72 sPR~ADillVeG~VT----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTVN----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecCC----ccchHHHHHHHHHcccCCEEEEecc
Confidence 567899999998543 2345677788888889999998853
No 384
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=34.04 E-value=37 Score=31.55 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=37.3
Q ss_pred cccccCCCCCCcCEEEEcCCCC----hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHH
Q 016237 268 TANFESVDVSGYDALVVPGGRA----PEYLALNENVIALVKDFMEAKKPVASICHGQQILA 324 (392)
Q Consensus 268 ~~~~~~~~~~~~D~viipgg~~----~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La 324 (392)
...++++....||.+||.|.+- .+....=+++.+.+....++......+|-|++.-.
T Consensus 88 Y~~~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaL 148 (298)
T PF04204_consen 88 YKTFDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAAL 148 (298)
T ss_dssp EE-HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHH
T ss_pred hhCHHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHH
Confidence 3468888778999999999652 11223336777777777778888999999998744
No 385
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.93 E-value=2e+02 Score=26.81 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=26.9
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
.+|++++-||.| .++..++.+...+.||.+|-.|-
T Consensus 62 ~~d~vi~~GGDG--------t~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 62 VCDLVIVVGGDG--------SLLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred CCCEEEEEeCcH--------HHHHHHHHhcCCCCCEEEEeCCc
Confidence 689999999866 34455566667788999998874
No 386
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=33.88 E-value=2.1e+02 Score=25.21 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCHH
Q 016237 26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDS 105 (392)
Q Consensus 26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~~ 105 (392)
.+...|++.||+|++.+.+.. +..+.+.....||+||.=+-.+... . +++
T Consensus 27 ~~~~~L~~~gf~V~~~~~~d~----------------------------~~~~~~~~L~~~D~lV~~~~~~~~~-l-~~e 76 (215)
T cd03142 27 TIAAALAEYGFDVQTATLDEP----------------------------EHGLTEEVLAETDVLLWWGHIAHDE-V-KDE 76 (215)
T ss_pred HHHHHHHhcCcEEEEEeccCc----------------------------cccCCHhHHhcCCEEEEeCCCCcCc-C-CHH
Confidence 345678889999997654321 1123333345899999833222122 2 244
Q ss_pred HHHHHHHHHhCCCeEEEEchhh
Q 016237 106 VIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 106 l~~~l~~~~~~~~~i~aic~G~ 127 (392)
..+-|.++.++|+=++++=.|.
T Consensus 77 q~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 77 IVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HHHHHHHHHHcCCCEEEECCCc
Confidence 5556666777776666665544
No 387
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=33.79 E-value=15 Score=38.14 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=35.9
Q ss_pred cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHH
Q 016237 294 ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKL 342 (392)
Q Consensus 294 ~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~ 342 (392)
++.++|++||++.-+.+.+.+ ....++|...|-.||+.|.||++++
T Consensus 503 pd~~eL~~WIk~nt~~~AvFA---GsM~lma~vkL~T~r~ivnHPhYEd 548 (642)
T PF10034_consen 503 PDTEELMEWIKSNTPPDAVFA---GSMPLMASVKLCTGRPIVNHPHYED 548 (642)
T ss_pred cCHHHHHHHHHhcCCCCCeec---cCcchHHHHHHhcCCccccCcccCC
Confidence 456999999998766654333 3347888889999999999999765
No 388
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=33.21 E-value=58 Score=26.42 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=28.4
Q ss_pred CCCCcCEEEEcCCCChhhccCChHHHHHHHHHH--HcCCcEEEEehH
Q 016237 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFM--EAKKPVASICHG 319 (392)
Q Consensus 275 ~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~--~~g~~i~aiC~G 319 (392)
+..+||.||+.++--. -...+.+.+||++.. -++++++.++.|
T Consensus 40 ~~~~yD~vi~gspiy~--g~~~~~~~~fi~~~~~~l~~k~v~~f~~~ 84 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYA--GRIPGEMREFIKKNKDNLKNKKVALFSVG 84 (143)
T ss_pred ccccCCEEEEEEEEEC--CcCCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 5568999999664211 134567888888654 466777776655
No 389
>PRK06934 flavodoxin; Provisional
Probab=33.11 E-value=33 Score=30.47 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=30.8
Q ss_pred CCCCcCEEEEcC--CCChhhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 275 DVSGYDALVVPG--GRAPEYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 275 ~~~~~D~viipg--g~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
+.++||.|||.- |.+ .....+..||.+..-.||.|+.+|+-
T Consensus 126 dl~~YD~I~IG~PIWwg----~~P~~V~tFLe~~d~~GK~I~pF~T~ 168 (221)
T PRK06934 126 NLADYDQIFIGYPIWWY----KMPMVMYSFFEQHDFSGKTLIPFTTH 168 (221)
T ss_pred hHHhCCEEEEEcchhhc----cccHHHHHHHHhcCCCCCEEEEEEec
Confidence 345899999832 222 34578889998888889999999974
No 390
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=32.74 E-value=85 Score=26.28 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=28.4
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
..+||+|++..|. ..-..++.+.++|++. ++|.|+-+++.
T Consensus 37 ~~~yD~i~lG~w~--d~G~~d~~~~~fl~~l--~~KkV~lF~T~ 76 (160)
T PF12641_consen 37 LEDYDLIFLGFWI--DKGTPDKDMKEFLKKL--KGKKVALFGTA 76 (160)
T ss_pred CCCCCEEEEEcCc--cCCCCCHHHHHHHHHc--cCCeEEEEEec
Confidence 4689999996653 3335689999999986 45656665553
No 391
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=32.21 E-value=88 Score=25.74 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=23.5
Q ss_pred CCCCcCEEEEcCCCChhhccCChHHHHHHHHHH---HcCCcEEEEe
Q 016237 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFM---EAKKPVASIC 317 (392)
Q Consensus 275 ~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~---~~g~~i~aiC 317 (392)
++.++|+++|.|.-.. ...+.|++.+ .+-|.|.|++
T Consensus 54 sPr~aDvllVtG~vt~-------~~~~~l~~~~e~~p~pk~VIA~G 92 (145)
T TIGR01957 54 SPRQADVMIVAGTVTK-------KMAPALRRLYDQMPEPKWVISMG 92 (145)
T ss_pred CCCcceEEEEecCCcH-------HHHHHHHHHHHhccCCceEEEec
Confidence 4567999999996442 1244455544 4588888884
No 392
>PRK12361 hypothetical protein; Provisional
Probab=32.07 E-value=4.6e+02 Score=26.76 Aligned_cols=23 Identities=13% Similarity=0.344 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEchh
Q 016237 104 DSVIDLVRKFSNSGKTIASICHG 126 (392)
Q Consensus 104 ~~l~~~l~~~~~~~~~i~aic~G 126 (392)
++..+||.+..++++.|.--|.+
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC~~ 184 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHCAL 184 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEECCC
Confidence 56788999988899999999964
No 393
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=31.99 E-value=42 Score=27.00 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
.+.|+++|-|.-. ..+....++++++.++.+.|+|+++=+
T Consensus 44 ~~~diliVeG~v~----~~~~~~~e~~~~~~~~a~~vIAvGtCA 83 (131)
T PF01058_consen 44 EEADILIVEGSVP----RNMEEALEWLKELRPKAKAVIAVGTCA 83 (131)
T ss_dssp TTTEEEEEESBEE----TGGEEHHHHHHHHHGCSSEEEEEHHHH
T ss_pred cCceEEEEEeecc----CCchHHHHHHHHHccCCceeEcCCCcc
Confidence 4789999988642 234788999999999999999998764
No 394
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=31.94 E-value=97 Score=26.74 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=48.1
Q ss_pred chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 016237 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAM 102 (392)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~ 102 (392)
.....+..|+.-++++++......+ . .-..+.+.+ +.||+|++..--+...+.+
T Consensus 33 GAd~Ll~~Lr~g~~dv~yMpAH~~q------------------~------~FPqtme~L--~~YDaivlSDiGsNt~LL~ 86 (254)
T COG5426 33 GADPLLKALRGGEYDVTYMPAHDAQ------------------E------KFPQTMEGL--DAYDAIVLSDIGSNTLLLQ 86 (254)
T ss_pred CchHHHHHHhCCCcceEEechHHHH------------------H------hcchhhhhh--cccceEEEeecCCceeecc
Confidence 4456778888899999998765321 1 111223443 4899999976322111222
Q ss_pred ---------CHHHHHHHHHHHhCCCeEEEEc
Q 016237 103 ---------NDSVIDLVRKFSNSGKTIASIC 124 (392)
Q Consensus 103 ---------~~~l~~~l~~~~~~~~~i~aic 124 (392)
-|.-+++|++..++|.=+..|+
T Consensus 87 ~~t~~~~k~~Pn~L~likdyV~~GGGLLMiG 117 (254)
T COG5426 87 PATWYHSKIVPNRLKLIKDYVENGGGLLMIG 117 (254)
T ss_pred ccceeecccCccHHHHHHHHHhcCCcEEEEc
Confidence 2467899999999887666665
No 395
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=31.93 E-value=67 Score=25.80 Aligned_cols=41 Identities=10% Similarity=0.230 Sum_probs=33.0
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
.+.|+++|-|.-. ..+....++++++.++.+.|.|+++-+.
T Consensus 44 ~~~diliVeG~v~----~~~~~~~e~~~~~~~~a~~vIAvGtCA~ 84 (131)
T PF01058_consen 44 EEADILIVEGSVP----RNMEEALEWLKELRPKAKAVIAVGTCAS 84 (131)
T ss_dssp TTTEEEEEESBEE----TGGEEHHHHHHHHHGCSSEEEEEHHHHH
T ss_pred cCceEEEEEeecc----CCchHHHHHHHHHccCCceeEcCCCccc
Confidence 3789999988642 1336789999999999999999998664
No 396
>PRK06242 flavodoxin; Provisional
Probab=31.33 E-value=65 Score=26.15 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCCccEEEEcCCCCcccccCCHHHHHHHHHHHh-CCCeEEEEchhhH
Q 016237 83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-SGKTIASICHGQL 128 (392)
Q Consensus 83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~-~~~~i~aic~G~~ 128 (392)
..+||.|++...- -.-.-.+.+.+||.+... ++|.++.+|++.+
T Consensus 41 ~~~~d~ii~g~pv--y~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 41 LSEYDLIGFGSGI--YFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred HhHCCEEEEeCch--hcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 3489999995431 111235678888887654 6888888887654
No 397
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=30.80 E-value=1.1e+02 Score=24.76 Aligned_cols=37 Identities=19% Similarity=-0.007 Sum_probs=26.8
Q ss_pred CCEEEEEecC-CCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 8 KRSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 8 ~~kI~ill~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
++||.+...+ .............|+.+||+|..++.+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 4566665554 345566777788899999999998875
No 398
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.67 E-value=2.7e+02 Score=28.66 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCCEEEEEecCCCC-ccc-hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCc-CcCCCCC
Q 016237 7 GKRSVLLLCGDYME-DYE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNA-TFDEIDP 83 (392)
Q Consensus 7 ~~~kI~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ 83 (392)
+++||+|+.-++-. ..+ +....+.|.+.|.++.+-..... .+.. ...... ...+ .
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~----------------~~~~----~~~~~~~~~~~--~ 346 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYN----------------KLKN----RLNEECNLIDD--I 346 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhh----------------hhcc----ccccccccccc--c
Confidence 57899998765542 222 23445567778887766432211 0000 000000 0111 1
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
.+.|.+|+-||.|+ +++-.+.+...+.||.+|-.|..
T Consensus 347 ~~~dlvi~lGGDGT--------~L~aa~~~~~~~~PilGin~G~l 383 (569)
T PRK14076 347 EEISHIISIGGDGT--------VLRASKLVNGEEIPIICINMGTV 383 (569)
T ss_pred cCCCEEEEECCcHH--------HHHHHHHhcCCCCCEEEEcCCCC
Confidence 25799999999765 33445556667899999998864
No 399
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.36 E-value=1.4e+02 Score=27.62 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=26.9
Q ss_pred CEEEEEecCCCCcc-----chHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYMEDY-----EAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~~~-----e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
+||+++........ ......+.|++.|+++..+..+
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 68998885433333 3478889999999999998654
No 400
>PRK06455 riboflavin synthase; Provisional
Probab=30.33 E-value=1.2e+02 Score=25.14 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=50.8
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhc--CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQAL--ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG 278 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~--~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 278 (392)
|+++.|+.......--..+..+.|++. +..+.++..-|-. -..+.....++ ...
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~---------------------ELP~aakkL~~---~~~ 56 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIK---------------------DLPVAAKKLIE---EEG 56 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHH---------------------HHHHHHHHHHh---cCC
Confidence 467777776654544467788888884 3556666543210 01111111122 246
Q ss_pred cCEEEEcCCCChh---hccCChHHHHHHHHHHHcCCcEEEE
Q 016237 279 YDALVVPGGRAPE---YLALNENVIALVKDFMEAKKPVASI 316 (392)
Q Consensus 279 ~D~viipgg~~~~---~~~~~~~l~~~l~~~~~~g~~i~ai 316 (392)
||++|.-|..|.. .+..++...-+.+-..+.++||+-+
T Consensus 57 yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 57 CDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHIIEV 97 (155)
T ss_pred CCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEEEE
Confidence 9999998866421 1333444444555556667777665
No 401
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.29 E-value=1.5e+02 Score=22.82 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCCccchH-HHHHHHHhCCCeEEE
Q 016237 8 KRSVLLLCGDYMEDYEAM-VPFQALLAFGVSVDA 40 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~-~~~~~l~~ag~~v~~ 40 (392)
++||++++.-|....=+. -.....++.|.++++
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V 36 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVII 36 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEE
Confidence 468999999988754444 344444566766555
No 402
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.27 E-value=2.9e+02 Score=25.68 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.9
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
++|++++-||.| .+++..+.+...+.||.++-.|.
T Consensus 63 ~~d~vi~lGGDG--------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 63 QADLAIVVGGDG--------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCeEEEEECCC
Confidence 689999999966 45566666666688999999887
No 403
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=29.75 E-value=76 Score=27.60 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=31.3
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (392)
|||++-=-||+...-+..+.+.|++.|++|.++.|...
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 46777777899999999999999888899999999864
No 404
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.60 E-value=43 Score=26.02 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=23.3
Q ss_pred CCCCCcchhHHHHHHHHhcCCeEEEEcCC
Q 016237 209 GDYMEDYEVAVPFQSLQALECHVDAVCPK 237 (392)
Q Consensus 209 ~~~~~~~e~~~~~~~~~~~~~~v~~~s~~ 237 (392)
........+......|++.|+++.++...
T Consensus 9 ~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 9 PGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp TTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 44556778888999999999999998654
No 405
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=29.30 E-value=41 Score=23.39 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHhCCCeEEEEchhhH
Q 016237 112 KFSNSGKTIASICHGQL 128 (392)
Q Consensus 112 ~~~~~~~~i~aic~G~~ 128 (392)
+.+++||.|.++|.|-.
T Consensus 41 ~~Fr~GKsIiAVleGe~ 57 (71)
T PF09558_consen 41 QSFRRGKSIIAVLEGEC 57 (71)
T ss_pred HHHcCCceEEEEEcCce
Confidence 45788999999999864
No 406
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=29.14 E-value=1.8e+02 Score=26.66 Aligned_cols=35 Identities=3% Similarity=-0.107 Sum_probs=17.1
Q ss_pred ccEEEEeCC--CCC--cchhHHHHHHHHhcCCeEEEEcC
Q 016237 202 KRILFLCGD--YME--DYEVAVPFQSLQALECHVDAVCP 236 (392)
Q Consensus 202 ~~v~ill~~--~~~--~~e~~~~~~~~~~~~~~v~~~s~ 236 (392)
+++.++..+ +.. ..........|.+.++++.+...
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t 40 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVT 40 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 455665555 221 11223345556666766665544
No 407
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=28.96 E-value=78 Score=28.27 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=46.1
Q ss_pred EEEEEecC---CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 10 kI~ill~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
+|++++.. .|...-+.+..+.+++.|+++.+......+ ... . ..+.++-...+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~---------------~~~------~---~~l~~~~~~~v 56 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDD---------------AKQ------A---DQIDQAIAQKV 56 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCH---------------HHH------H---HHHHHHHHcCC
Confidence 47888753 233334456677888899999887543221 000 0 01111112368
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEE
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 123 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~ai 123 (392)
|+|++..+.. ....+.+++..+++.++..+
T Consensus 57 dgii~~~~~~-------~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 57 DAIIIQHGRA-------EVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred CEEEEecCCh-------hhhHHHHHHHHHcCCCEEEe
Confidence 9999965321 22334466666778887766
No 408
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=28.87 E-value=76 Score=25.32 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=27.8
Q ss_pred CchhHHHHHHcCCeeeCCCCCceEEEcCCeEEccCCCChHHHHHHH
Q 016237 337 YPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQL 382 (392)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~l 382 (392)
++.+.+.++..|....+ .++.||+++..+...+-.+|+.++
T Consensus 58 n~~V~~~L~~~G~e~LP-----itlVdGeiv~~G~YPt~eEl~~~~ 98 (123)
T PF06953_consen 58 NPEVNQLLQTEGAEALP-----ITLVDGEIVKTGRYPTNEELAEWL 98 (123)
T ss_dssp SHHHHHHHHHH-GGG-S-----EEEETTEEEEESS---HHHHHHHH
T ss_pred CHHHHHHHHHcCcccCC-----EEEECCEEEEecCCCCHHHHHHHh
Confidence 44556667777776664 689999999999988988887765
No 409
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.54 E-value=40 Score=28.39 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=30.5
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP 43 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (392)
.++|+|++.+|-+..+-......|.+.|++|.++..
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEE
Confidence 579999999999999999999999999999999443
No 410
>PLN02929 NADH kinase
Probab=28.47 E-value=2.4e+02 Score=26.37 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.6
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
+.|++|+-||.|+. +...+.+ ..++||.+|-.|+
T Consensus 64 ~~Dlvi~lGGDGT~--------L~aa~~~-~~~iPvlGIN~Gp 97 (301)
T PLN02929 64 DVDLVVAVGGDGTL--------LQASHFL-DDSIPVLGVNSDP 97 (301)
T ss_pred CCCEEEEECCcHHH--------HHHHHHc-CCCCcEEEEECCC
Confidence 67999999998753 2333444 6789999999985
No 411
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=28.44 E-value=38 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=13.4
Q ss_pred HHhCCCeEEEEchhhH
Q 016237 113 FSNSGKTIASICHGQL 128 (392)
Q Consensus 113 ~~~~~~~i~aic~G~~ 128 (392)
-+++||.|.++|.|-.
T Consensus 40 eFkrGKsIiAV~EGe~ 55 (67)
T TIGR02922 40 EFKRGKSIIAVCEGEI 55 (67)
T ss_pred HHcCCCeEEEEEecce
Confidence 4678999999999864
No 412
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=1.7e+02 Score=27.34 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.+|+=+++.+.....|-......|++.|.++.++..+.. + .+ ..+.|
T Consensus 143 ~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~----------------------~-------~~----~~~vd 189 (301)
T COG1184 143 GKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAV----------------------G-------AF----MSRVD 189 (301)
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHH----------------------H-------HH----HHhCC
Confidence 466888888888888888888888888888777754421 0 01 12678
Q ss_pred EEEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEch
Q 016237 88 GLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICH 125 (392)
Q Consensus 88 ~iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~ 125 (392)
.+++ |.++.. .+.+.--...+..-+++.++|+.++|.
T Consensus 190 ~Viv-Gad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ae 229 (301)
T COG1184 190 KVLV-GADAILANGALVNKIGTSPLALAARELRVPFYVVAE 229 (301)
T ss_pred EEEE-CccceecCCcEEeccchHHHHHHHHHhCCCEEEEee
Confidence 8888 544321 133333444555556777999998885
No 413
>PRK06242 flavodoxin; Provisional
Probab=28.01 E-value=86 Score=25.41 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHH-cCCcEEEEehHHH
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFME-AKKPVASICHGQQ 321 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~-~g~~i~aiC~G~~ 321 (392)
..+||.|++.... ..-...+.+.+||.+... ++|+++.+|++.+
T Consensus 41 ~~~~d~ii~g~pv--y~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 41 LSEYDLIGFGSGI--YFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred HhHCCEEEEeCch--hcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 3589999985521 112345678888887644 7899999888743
No 414
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=27.99 E-value=1.1e+02 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=28.9
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
|||++.+.-.............|.+.|++|+++-..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 589999988778788999999999999999966543
No 415
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=27.98 E-value=4.7e+02 Score=23.86 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=75.5
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~ 167 (392)
.+.|.|..+.. .++....++.++..+++..|...+-+..-++++|+.++. + +. ..-++ +
T Consensus 97 v~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC~a~~l~k~gl~~~~--g----------~~----~giP~---v 155 (258)
T cd00587 97 VALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGCAAEALLKLGLEDGA--G----------IL----GGLPI---V 155 (258)
T ss_pred EEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecchHHHHHHhcCCcccc--c----------cc----cCCCc---e
Confidence 44554544443 466788999999999999999988889999999998772 1 11 11122 4
Q ss_pred eecCceEecCCCCChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEE
Q 016237 168 VVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDA 233 (392)
Q Consensus 168 v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~ 233 (392)
..=| +|.....+..++.++.+.+.+.. .....+.+.+..++++-.++. .--|...|+.+.+
T Consensus 156 l~~G---sCvD~~~ai~~A~~lA~~fg~~~-in~LP~~~~a~~~~sqKAvAi-~~g~l~lGIpv~~ 216 (258)
T cd00587 156 FDMG---NCVDNSHAANLALKLANMFGGYD-RSDLPAVASAPGAYSQKAAAI-ATGAVFLGVPVHV 216 (258)
T ss_pred eecc---cchhHHHHHHHHHHHHHHhCCCC-cccCceEEEccchhhHHHHHH-HHHHHHcCCceee
Confidence 4445 56556677788888888877422 133345555555566444444 4445566774433
No 416
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.70 E-value=1e+02 Score=25.54 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.2
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCC--CeEEEECCCCCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKKS 47 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~ 47 (392)
++|+|++....+..-.....++|.+.| |++.++|....|
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTP 43 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTP 43 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCH
Confidence 489999988777767778888999887 899999998654
No 417
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=27.41 E-value=1.3e+02 Score=26.56 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=30.5
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
+|+.|++.||....++..+...+++.|.++..++..
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG 144 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVG 144 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCC
Confidence 689999999987777888889999999888777654
No 418
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=27.22 E-value=2.2e+02 Score=25.08 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=29.9
Q ss_pred CcCEEEEcC-CCChhhccCChHHHHHHHHHHHcCCcEEEEeh----HHHHHHHc
Q 016237 278 GYDALVVPG-GRAPEYLALNENVIALVKDFMEAKKPVASICH----GQQILAAA 326 (392)
Q Consensus 278 ~~D~viipg-g~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~----G~~~La~a 326 (392)
+..+|++-. +.+. .....+++.+.|+++.+.+|||.+... |..+||.+
T Consensus 46 ~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVia~~~~~~sggy~lasa 98 (222)
T cd07018 46 RIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVIAYADGYSQGQYYLASA 98 (222)
T ss_pred CeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEEEEeCCCCchhhhhhhh
Confidence 567777733 2221 223457788899988888999887643 44444444
No 419
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=27.19 E-value=46 Score=30.89 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCccEEEEe-CCCCCcchhHHHHHHHHhcC--CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC
Q 016237 200 SDKRILFLC-GDYMEDYEVAVPFQSLQALE--CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV 276 (392)
Q Consensus 200 ~~~~v~ill-~~~~~~~e~~~~~~~~~~~~--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 276 (392)
+..+|+|+- .+.-..+|. .+...|.... .+++++.+..-... .++...--..-..++++..
T Consensus 34 rpL~I~ILNLMP~K~~TE~-Q~lRlL~ntplqv~i~~~~~~sh~~k---------------~t~~~hl~~fY~~f~~ik~ 97 (300)
T TIGR01001 34 RPLEILILNLMPKKIETEN-QFLRLLSNSPLQVNITLLRTDSRKSK---------------NTPIEHLNKFYTTFEAVKD 97 (300)
T ss_pred cceeEEEEecCCccHHHHH-HHHHHhcCCCCceEEEEEEeccccCC---------------CCCHHHHHHHhhCHHHHhc
Confidence 456777764 444444443 3445554444 55777766533200 0001111122346777777
Q ss_pred CCcCEEEEcCCCCh----hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237 277 SGYDALVVPGGRAP----EYLALNENVIALVKDFMEAKKPVASICHGQQILAA 325 (392)
Q Consensus 277 ~~~D~viipgg~~~----~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ 325 (392)
..||.+||.|.+-. +....=+++.+.+....++-.-...+|-|++.-..
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy 150 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLK 150 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 89999999996521 11222356666666666677788899999886443
No 420
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.96 E-value=1.6e+02 Score=22.85 Aligned_cols=27 Identities=19% Similarity=-0.021 Sum_probs=20.5
Q ss_pred CCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 18 YMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 18 g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
......+......|+..||+|......
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 345567778889999999999776643
No 421
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.95 E-value=2.5e+02 Score=22.12 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=24.1
Q ss_pred CccEEEEcCCC-CcccccCCHHHHHHHHHHH---hCCCeEEEEchhh
Q 016237 85 KYDGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHGQ 127 (392)
Q Consensus 85 ~~D~iiipGG~-~~~~~~~~~~l~~~l~~~~---~~~~~i~aic~G~ 127 (392)
+||.|++.... +..... +..+..|+.+.. -+++.++.+++|.
T Consensus 45 ~~d~iilgspty~~g~~p-~~~~~~f~~~l~~~~~~gk~~~vfgt~g 90 (140)
T TIGR01753 45 SYDAVLLGCSTWGDEDLE-QDDFEPFFEELEDIDLGGKKVALFGSGD 90 (140)
T ss_pred cCCEEEEEcCCCCCCCCC-cchHHHHHHHhhhCCCCCCEEEEEecCC
Confidence 68999885542 211111 245556665544 3578888777654
No 422
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=26.90 E-value=98 Score=26.48 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=29.7
Q ss_pred CCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEeh
Q 016237 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICH 318 (392)
Q Consensus 275 ~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~ 318 (392)
++.++|+++|.|.-. .+....++.++++..+-|.|.|+++
T Consensus 70 sPR~aDillVeG~VT----~~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 70 SPRQADMLMVMGTIA----KKMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CCccceEEEEEecCC----cccHHHHHHHHHhcCCCCeEEEEec
Confidence 567899999998543 2346677777777779999998853
No 423
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=26.69 E-value=1.3e+02 Score=26.19 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=30.9
Q ss_pred ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCC
Q 016237 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKA 240 (392)
Q Consensus 202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~ 240 (392)
|+|++--=||+....+..+++.|++.|++|.++.|...+
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 355666668999889999999998888999999998664
No 424
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.57 E-value=1.9e+02 Score=22.40 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=19.4
Q ss_pred CCCCcchhHHHHHHHHhcCCeEEEEcC
Q 016237 210 DYMEDYEVAVPFQSLQALECHVDAVCP 236 (392)
Q Consensus 210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~ 236 (392)
...........-..|+..||++.....
T Consensus 9 ~e~H~lG~~~~~~~l~~~G~~V~~lg~ 35 (119)
T cd02067 9 GDGHDIGKNIVARALRDAGFEVIDLGV 35 (119)
T ss_pred CchhhHHHHHHHHHHHHCCCEEEECCC
Confidence 345555666777889999999866653
No 425
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=26.54 E-value=62 Score=30.10 Aligned_cols=53 Identities=30% Similarity=0.475 Sum_probs=34.5
Q ss_pred CcCCCCCCCccEEEEcCCCC-c---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHH
Q 016237 77 TFDEIDPSKYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129 (392)
Q Consensus 77 ~~~~~~~~~~D~iiipGG~~-~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~ 129 (392)
+++++....||++||.|-.- . +....=+++.+++.-.-.+.....-+|-|+..
T Consensus 90 ~~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqA 146 (298)
T PF04204_consen 90 TFDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQA 146 (298)
T ss_dssp -HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred CHHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHH
Confidence 57777777899999999642 1 11222356777777777778899999999976
No 426
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.53 E-value=1.6e+02 Score=27.57 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAA 325 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ 325 (392)
....|+|++.|..- .. .....+.+|++...++|+.++-=|+|..+.+.
T Consensus 127 l~~~d~VvlsGSlP-~g-~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~ 174 (310)
T COG1105 127 LESDDIVVLSGSLP-PG-VPPDAYAELIRILRQQGAKVILDTSGEALLAA 174 (310)
T ss_pred cccCCEEEEeCCCC-CC-CCHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 45789999877432 12 24677889999999999999999999988753
No 427
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=26.53 E-value=1.2e+02 Score=26.83 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=36.9
Q ss_pred cCCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceee
Q 016237 272 ESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCT 335 (392)
Q Consensus 272 ~~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T 335 (392)
.+-..+.+|+++|..- +...++.+|+.+ .+|+.++|..+...|.. -|||++
T Consensus 63 ~~~~~~GvdaiiIaCf--------~DPgl~~~Re~~--~~PviGi~eAsv~~A~~---vgrrfs 113 (230)
T COG4126 63 ADGEEQGVDAIIIACF--------SDPGLAAARERA--AIPVIGICEASVLAALF---VGRRFS 113 (230)
T ss_pred hcccccCCcEEEEEec--------CChHHHHHHHHh--CCCceehhHHHHHHHHH---hcceEE
Confidence 3334457999999652 227778888776 68999999999887754 477754
No 428
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=26.43 E-value=1.2e+02 Score=28.40 Aligned_cols=87 Identities=9% Similarity=0.060 Sum_probs=54.2
Q ss_pred CCCEEEEEecC---CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237 7 GKRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (392)
Q Consensus 7 ~~~kI~ill~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (392)
++++|++++.+ .|...-+.+..+.+.+.||++.+......+ ... ...+..+..
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~-----------------~~~-------~~~i~~l~~ 79 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNE-----------------ETQ-------MSQIENMIN 79 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCH-----------------HHH-------HHHHHHHHH
Confidence 35789999963 455566778888899999999988664321 000 001122222
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEc
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 124 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic 124 (392)
..+|+|++.+.. .....++++.+.+++.|+..+.
T Consensus 80 ~~vDGiIi~~~~-------~~~~~~~l~~~~~~~iPvV~id 113 (330)
T PRK10355 80 RGVDVLVIIPYN-------GQVLSNVIKEAKQEGIKVLAYD 113 (330)
T ss_pred cCCCEEEEeCCC-------hhhHHHHHHHHHHCCCeEEEEC
Confidence 368999996531 1123456677777788888774
No 429
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=26.29 E-value=1.2e+02 Score=26.18 Aligned_cols=36 Identities=17% Similarity=-0.048 Sum_probs=29.8
Q ss_pred CEEEEEecCCCCcc----chHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYMEDY----EAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~~~----e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
+||+||+.||.+.. .+..+...|++.|..+-.++..
T Consensus 109 ~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG 148 (192)
T cd01473 109 PKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVG 148 (192)
T ss_pred CeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEec
Confidence 69999999998753 3567788899999998888875
No 430
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=26.23 E-value=73 Score=26.15 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=50.1
Q ss_pred CCEEEEEecCCCCcc---chHHHHHHHHhCCC---eEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCC
Q 016237 8 KRSVLLLCGDYMEDY---EAMVPFQALLAFGV---SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (392)
Q Consensus 8 ~~kI~ill~~g~~~~---e~~~~~~~l~~ag~---~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (392)
..||+|+........ =+.+..+.|.+.|. +++++...| +..+.+....-+.
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPG---------------------a~ElP~a~~~l~~-- 59 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPG---------------------AFELPLAAKRLAE-- 59 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESS---------------------GGGHHHHHHHHHH--
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCC---------------------HHHHHHHHHHHhc--
Confidence 468999998754421 12346788888887 677766433 1122222222222
Q ss_pred CCCCccEEEEcCC--CC--ccc-ccCCHHHHHHHHHHHhCCCeEE
Q 016237 82 DPSKYDGLVIPGG--RA--PEY-LAMNDSVIDLVRKFSNSGKTIA 121 (392)
Q Consensus 82 ~~~~~D~iiipGG--~~--~~~-~~~~~~l~~~l~~~~~~~~~i~ 121 (392)
..+||+++.-|- .| ..+ +..+.....+++-..+.++||.
T Consensus 60 -~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~ 103 (144)
T PF00885_consen 60 -SGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEYGIPVI 103 (144)
T ss_dssp -CSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred -ccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccCCccEE
Confidence 236999999882 22 111 3334445555555577788865
No 431
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=26.10 E-value=1.4e+02 Score=28.30 Aligned_cols=58 Identities=26% Similarity=0.344 Sum_probs=39.7
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEE--eh-H---------HHHHHHcCCCCCceeec
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASI--CH-G---------QQILAAAGVLKGKKCTA 336 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~ai--C~-G---------~~~La~aglL~g~~~T~ 336 (392)
.++.||+-| +|.-..+.++.+.+.|++..++|.+|+.. |. | ...|.++|++.+...|.
T Consensus 233 ~~~GiVl~~-~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~~G~v~~~~Y~~g~~l~~~G~i~~g~lt~ 302 (335)
T PRK09461 233 PVKALILRS-YGVGNAPQNPALLQELKEASERGIVVVNLTQCMSGKVNMGGYATGNALAHAGVISGADMTV 302 (335)
T ss_pred CCCEEEEcc-CCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCcCCccchhhhHHHHhCCEEECCCCCH
Confidence 589999987 33324455688999999999999887664 42 1 22466667776666554
No 432
>PRK07308 flavodoxin; Validated
Probab=26.01 E-value=2.8e+02 Score=22.33 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=22.2
Q ss_pred CCccEEEEcCCC-CcccccCCHHHHHHHHHH---HhCCCeEEEEchh
Q 016237 84 SKYDGLVIPGGR-APEYLAMNDSVIDLVRKF---SNSGKTIASICHG 126 (392)
Q Consensus 84 ~~~D~iiipGG~-~~~~~~~~~~l~~~l~~~---~~~~~~i~aic~G 126 (392)
.+||.|++.-.. +...+ .+.+.+|+... .-+++.++.++.|
T Consensus 47 ~~~d~vi~g~~t~g~G~~--p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 47 EDADIAIVATYTYGDGEL--PDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred ccCCEEEEEeCccCCCCC--CHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 368898883321 21111 23455565554 2346777777765
No 433
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.92 E-value=1.6e+02 Score=24.73 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCcCCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcC
Q 016237 184 EFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCP 236 (392)
Q Consensus 184 ~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~ 236 (392)
.++..+.+.+. ....+++.++..+|-+.-+-......|...|++|.++..
T Consensus 11 ~~a~~i~~~~~---~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 11 AIAELIRKLFG---SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp HHHHHHHHHST---CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhc---ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEE
Confidence 34444444432 245678999999998888888888888889999888443
No 434
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=25.57 E-value=1.5e+02 Score=24.42 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
.+|+.|++.||....++....+.+++.|.++..++..
T Consensus 103 ~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 103 VPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 4689999999987767777788999999988888764
No 435
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=25.57 E-value=6.5e+02 Score=24.79 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=28.6
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhc----CCeEEEEcCC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQAL----ECHVDAVCPK 237 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~----~~~v~~~s~~ 237 (392)
.+++.++-++|+.+.......+-|++. +.+++.+..+
T Consensus 138 ~~~i~vvgi~g~~DF~p~l~a~~L~~~~~~~~~~~~~~~~~ 178 (419)
T TIGR03378 138 HDRILLVGIEGFRDFQPQLAADNLKQHPQFAHCEITTAELE 178 (419)
T ss_pred cCcEEEEEcccccccCHHHHHHHHHhccccCCCceEEEEEE
Confidence 356999999999988888888999887 5666555543
No 436
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.35 E-value=1.5e+02 Score=23.78 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=30.7
Q ss_pred CCcCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237 277 SGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327 (392)
Q Consensus 277 ~~~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag 327 (392)
...|+|++-||..... -...+...+++.+ ..++.++++|-=. +++.+|
T Consensus 84 n~aDvvVLlGGLaMP~~gv~~d~~kel~ee--~~~kkliGvCfm~-mF~rag 132 (154)
T COG4090 84 NSADVVVLLGGLAMPKIGVTPDDAKELLEE--LGNKKLIGVCFMN-MFERAG 132 (154)
T ss_pred ccccEEEEEcccccCcCCCCHHHHHHHHHh--cCCCceEEeeHHH-HHHHcC
Confidence 3589999999986333 2334555566652 2356799999753 456666
No 437
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=25.23 E-value=99 Score=30.11 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=32.9
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK 45 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (392)
|++|+|+-.=.....|+....+.+.+.|.++.++-.+-
T Consensus 1 M~tI~iigT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~ 38 (403)
T PF06792_consen 1 MKTIAIIGTLDTKGEELLYLRDQIEAQGVEVLLIDVGT 38 (403)
T ss_pred CCEEEEEEccCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 35899999888889999999999999999988887653
No 438
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=25.21 E-value=2.6e+02 Score=26.08 Aligned_cols=101 Identities=11% Similarity=0.124 Sum_probs=50.4
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCccccccccc-Cccc---cCcCcCCCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG-HNFA---LNATFDEIDP 83 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~---~~~~~~~~~~ 83 (392)
.+||+|+ .-|.- ... ....|.++|.+|.+++.+.. +. + ...+. .+....| ..+. .....++ .
T Consensus 5 ~m~I~Ii-G~Gai--G~~-lA~~L~~~g~~V~~~~r~~~--~~----~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~ 70 (313)
T PRK06249 5 TPRIGII-GTGAI--GGF-YGAMLARAGFDVHFLLRSDY--EA----V-RENGL-QVDSVHGDFHLPPVQAYRSAED--M 70 (313)
T ss_pred CcEEEEE-CCCHH--HHH-HHHHHHHCCCeEEEEEeCCH--HH----H-HhCCe-EEEeCCCCeeecCceEEcchhh--c
Confidence 4689988 33333 222 22456778999999987531 10 0 00010 1111111 1111 1111122 3
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
..+|.|||+-=. .+...+.+.++.....+..|..+.+|.
T Consensus 71 ~~~D~vilavK~-----~~~~~~~~~l~~~~~~~~~iv~lqNG~ 109 (313)
T PRK06249 71 PPCDWVLVGLKT-----TANALLAPLIPQVAAPDAKVLLLQNGL 109 (313)
T ss_pred CCCCEEEEEecC-----CChHhHHHHHhhhcCCCCEEEEecCCC
Confidence 478999986421 123456677777766667777777764
No 439
>PLN02929 NADH kinase
Probab=25.16 E-value=2.6e+02 Score=26.14 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
.++|++|.-||.| .++...+.+ ..++||.+|-.|+
T Consensus 63 ~~~Dlvi~lGGDG--------T~L~aa~~~-~~~iPvlGIN~Gp 97 (301)
T PLN02929 63 RDVDLVVAVGGDG--------TLLQASHFL-DDSIPVLGVNSDP 97 (301)
T ss_pred CCCCEEEEECCcH--------HHHHHHHHc-CCCCcEEEEECCC
Confidence 4679999999977 344555555 6788999999984
No 440
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=25.10 E-value=1.6e+02 Score=25.75 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=28.5
Q ss_pred CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
+.+||+||+-...+. ..+++..+-|+++.++|+.++++..+
T Consensus 50 L~~~Dvvv~~~~~~~---~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGD---ELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCT-SEEEEE-SSCC---GS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hcCCCEEEEECCCCC---cCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 458999999775531 14678888888999999999999833
No 441
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=25.04 E-value=1.5e+02 Score=24.27 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=0.0
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
+|+.|++.||....+.......+++.|.++..++..
T Consensus 104 ~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g 139 (164)
T cd01472 104 PKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVK 139 (164)
T ss_pred CEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECC
No 442
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.83 E-value=1.5e+02 Score=22.99 Aligned_cols=37 Identities=8% Similarity=0.018 Sum_probs=29.9
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
+-|++|+.+-.| ..+++.+.++.+.++|.++.+++..
T Consensus 46 ~~d~~I~iS~sG-----~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQSG-----ETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCcEEEEEeCCc-----CCHHHHHHHHHHHHcCCeEEEEECC
Confidence 457888766444 4678999999999999999999865
No 443
>PRK06934 flavodoxin; Provisional
Probab=24.64 E-value=64 Score=28.63 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEch
Q 016237 82 DPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (392)
Q Consensus 82 ~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~ 125 (392)
+..+||.|+| |..-+- -.-.+.+..||.+..-.||.|+-+|+
T Consensus 126 dl~~YD~I~I-G~PIWw-g~~P~~V~tFLe~~d~~GK~I~pF~T 167 (221)
T PRK06934 126 NLADYDQIFI-GYPIWW-YKMPMVMYSFFEQHDFSGKTLIPFTT 167 (221)
T ss_pred hHHhCCEEEE-Ecchhh-ccccHHHHHHHHhcCCCCCEEEEEEe
Confidence 3458999999 322111 12347789999988889999999997
No 444
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.11 E-value=4e+02 Score=21.75 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=54.0
Q ss_pred CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCC--CCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPK--KKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS 277 (392)
Q Consensus 200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 277 (392)
..|+|+++-...--.-.-....+.|.+.||+|--+.|. ++. -.....-.++.++. .
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~e---------------------iLG~k~y~sL~dIp-e 72 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEE---------------------ILGEKVYPSLADIP-E 72 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHH---------------------hcCchhhhcHHhCC-C
Confidence 35677777654444444555666777889999999884 221 11233445677765 5
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCC
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKK 311 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~ 311 (392)
..|+|-+ ++.++.+.+.++++.+.+.
T Consensus 73 ~IDiVdv--------FR~~e~~~~i~~eal~~~~ 98 (140)
T COG1832 73 PIDIVDV--------FRRSEAAPEVAREALEKGA 98 (140)
T ss_pred CCcEEEE--------ecChhhhHHHHHHHHhhCC
Confidence 7788865 4667888888888888773
No 445
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.09 E-value=4e+02 Score=21.75 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=53.9
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.|+|+++-...-..-........|.+.||+|--+.|+-. -.+-.|.+. =.++.+++ ..-|
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~-----------------~~eiLG~k~--y~sL~dIp-e~ID 75 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLA-----------------GEEILGEKV--YPSLADIP-EPID 75 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccc-----------------hHHhcCchh--hhcHHhCC-CCCc
Confidence 579999988666666667777888899999998888421 001112222 23456654 5677
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHhCC
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSG 117 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~ 117 (392)
+|-| ++....+.+.++++.+.+
T Consensus 76 iVdv--------FR~~e~~~~i~~eal~~~ 97 (140)
T COG1832 76 IVDV--------FRRSEAAPEVAREALEKG 97 (140)
T ss_pred EEEE--------ecChhhhHHHHHHHHhhC
Confidence 7766 455667777888887766
No 446
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.03 E-value=4.3e+02 Score=24.24 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=22.2
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
+.|++++-||.|+.- +.+..-..||.+|-.|..
T Consensus 52 ~~D~vi~lGGDGT~L-----------~a~~~~~~PilGIN~G~l 84 (271)
T PRK01185 52 NADVIITIGGDGTIL-----------RTLQRAKGPILGINMGGL 84 (271)
T ss_pred CCCEEEEEcCcHHHH-----------HHHHHcCCCEEEEECCCC
Confidence 579999999988642 111112359999988753
No 447
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.99 E-value=1.4e+02 Score=25.65 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=26.5
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEeh
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICH 318 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~ 318 (392)
.+|++||.|| + ..+.++++..+....|..+.+-+.
T Consensus 102 ~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 7999999887 4 246788888888777777776654
No 448
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.98 E-value=1.2e+02 Score=23.94 Aligned_cols=26 Identities=27% Similarity=0.018 Sum_probs=20.1
Q ss_pred CCccchHHHHHHHHhCCCeEEEECCC
Q 016237 19 MEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 19 ~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
............|+.+||+|...+..
T Consensus 11 ~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 11 GHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 44456667778899999999988775
No 449
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=23.92 E-value=4.9e+02 Score=26.33 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCCccc--hHHHHHHHH-hCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237 7 GKRSVLLLCGDYMEDYE--AMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (392)
Q Consensus 7 ~~~kI~ill~~g~~~~e--~~~~~~~l~-~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (392)
.+++|+|+.-++-.... +..+...|. ..|+++.+-..... ...... ..........+...
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~----------------~l~~~~-~~~~~~~~~~~~~~ 255 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKK----------------ELLSES-SYFNFVQTWEDEKE 255 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhh----------------hhcccc-ccccccccccccch
Q ss_pred -----CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchh
Q 016237 84 -----SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (392)
Q Consensus 84 -----~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G 126 (392)
.++|+||+.|| |..++...+.+.....||.+|-.|
T Consensus 256 ~~~l~~~~DlVIsiGG--------DGTlL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 256 ILLLHTKVDLVITLGG--------DGTVLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred hhhcccCCCEEEEECC--------cHHHHHHHHHhccCCCcEEEEeCC
No 450
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=23.79 E-value=2e+02 Score=26.71 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=47.2
Q ss_pred CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCC--CCCccEEEEcCCCCcccccCCHHHHHHHHHH
Q 016237 36 VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID--PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKF 113 (392)
Q Consensus 36 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~ 113 (392)
++|++++|-...++. ++...+.- ......|-++....++.+.- ..+...|||.||.|.... ..++.+.|++.
T Consensus 228 ~NvRIAtPPp~~~~~-PpG~mSSy---i~sLKpGDKvtisGPfGEfFaKdtdaemvFigGGAGmapm--RSHIfDqL~rl 301 (410)
T COG2871 228 LNVRIATPPPRNPDA-PPGQMSSY---IWSLKPGDKVTISGPFGEFFAKDTDAEMVFIGGGAGMAPM--RSHIFDQLKRL 301 (410)
T ss_pred EEEEeccCCCCCCCC-Cccceeee---EEeecCCCeEEEeccchhhhhccCCCceEEEecCcCcCch--HHHHHHHHHhh
Confidence 789999886443322 22221111 22334455566665555542 235668999998774432 24677777776
Q ss_pred HhCCCeEEEEchhhH
Q 016237 114 SNSGKTIASICHGQL 128 (392)
Q Consensus 114 ~~~~~~i~aic~G~~ 128 (392)
+. +.-.+...|+-
T Consensus 302 hS--kRkis~WYGAR 314 (410)
T COG2871 302 HS--KRKISFWYGAR 314 (410)
T ss_pred cc--cceeeeeeccc
Confidence 64 34455666554
No 451
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.79 E-value=1e+02 Score=30.44 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=33.3
Q ss_pred ccEEEEcCCCC-ccc--ccCCHHHHHHHHHHHhCCCe-EEEEchhhH-HhhcCcccCCeeEecCCCc
Q 016237 86 YDGLVIPGGRA-PEY--LAMNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYPPV 147 (392)
Q Consensus 86 ~D~iiipGG~~-~~~--~~~~~~l~~~l~~~~~~~~~-i~aic~G~~-~La~agll~g~~~T~~~~~ 147 (392)
||+|||.=|-| .++ ..++..+.+. .++...| |.||+|=.- .|+ .+...+++.|+...
T Consensus 193 ~Dviii~RGGGS~eDL~~Fn~e~v~~a---i~~~~~Pvis~IGHE~D~tl~--D~vAd~ra~TPtaa 254 (438)
T PRK00286 193 EDVLIVARGGGSLEDLWAFNDEAVARA---IAASRIPVISAVGHETDFTIA--DFVADLRAPTPTAA 254 (438)
T ss_pred CCEEEEecCCCCHHHhhccCcHHHHHH---HHcCCCCEEEeccCCCCccHH--HHhhhccCCChHHH
Confidence 89999975544 343 2355555444 4444555 788998542 222 45666677776543
No 452
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.60 E-value=3.5e+02 Score=20.90 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=30.4
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
+-|.+|+.+-.| +++++.+.++.+.+++.++.+++...
T Consensus 47 ~~d~vi~iS~sG-----~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 47 PGDVVIAISNSG-----ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 557888876443 56889999999999999999998743
No 453
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=23.29 E-value=4.3e+02 Score=24.33 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CEEEEEecCCC--CccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 9 RSVLLLCGDYM--EDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 9 ~kI~ill~~g~--~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
++|+++.-+.. ...........+...++.+.+...... ..... ....+.+.+.+
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~l~~~--------~~~~~~~~~~~ 56 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAE----------------ELKDF--------ADYVDDDEEKA 56 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhh----------------hcccc--------cccccccccCc
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchh
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G 126 (392)
|++++-|| +..++...+.+.+.+.+|.++-.|
T Consensus 57 d~ivvlGG--------DGtlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 57 DLIVVLGG--------DGTLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred eEEEEeCC--------cHHHHHHHHHhccCCCCEEEEeCC
No 454
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.11 E-value=98 Score=28.25 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHH
Q 016237 277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320 (392)
Q Consensus 277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~ 320 (392)
+++|++++-||.| .+++.++.+...+.||.+|-.|.
T Consensus 32 ~~~D~vi~iGGDG--------T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG--------FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH--------HHHHHHHHhcCCCCcEEEEecCC
Confidence 4689999999866 45667777777888999998884
No 455
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=23.10 E-value=3.1e+02 Score=26.38 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=41.0
Q ss_pred CCCChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCC
Q 016237 178 TYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPK 237 (392)
Q Consensus 178 g~~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~ 237 (392)
-+.+=.++..+++..+.|+.......++ |+...++....+++..++|-+-++...
T Consensus 201 ~p~sDyelisAl~~~l~G~~~~~~eev~-----gvp~~~i~e~a~~mKna~Fg~if~GlG 255 (429)
T COG1029 201 KPNSDYELISALRAALHGKEPHRSEEVA-----GVPIEEIEELADMMKNAKFGAIFVGLG 255 (429)
T ss_pred CCCCcHHHHHHHHHHhcCCCCCCchhhc-----CCCHHHHHHHHHHHhcCCcceEEEeec
Confidence 3456678899999999988754444443 566667888889999999888888764
No 456
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=23.03 E-value=1.6e+02 Score=27.77 Aligned_cols=79 Identities=9% Similarity=0.069 Sum_probs=44.0
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG 88 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ 88 (392)
+||+|+-. |.-...++..+ .....+-++.++....+........+.... .. ......+..+..++++. +.|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l-~~~~~~~el~LiDi~~~~~~G~a~DL~~~~---~~-~~~~~~i~~~~~y~~~~--~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLL-LLQGLGSELVLIDINEEKAEGVALDLSHAA---AP-LGSDVKITGDGDYEDLK--GADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHH-hcccccceEEEEEcccccccchhcchhhcc---hh-ccCceEEecCCChhhhc--CCCE
Confidence 47888888 87776776666 555556566666665333222222232221 11 11123333333356544 8999
Q ss_pred EEEcCCC
Q 016237 89 LVIPGGR 95 (392)
Q Consensus 89 iiipGG~ 95 (392)
++|++|.
T Consensus 73 VvitAG~ 79 (313)
T COG0039 73 VVITAGV 79 (313)
T ss_pred EEEeCCC
Confidence 9999985
No 457
>PLN02727 NAD kinase
Probab=22.82 E-value=3.8e+02 Score=29.28 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=27.4
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~ 128 (392)
..|+||+-||.|+ ++...+.+...+.||.+|-.|..
T Consensus 743 ~~DLVIvLGGDGT--------lLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 743 RVDFVACLGGDGV--------ILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred CCCEEEEECCcHH--------HHHHHHHhcCCCCCEEEEeCCCc
Confidence 6899999999765 33445556667889999998864
No 458
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=22.74 E-value=1.5e+02 Score=25.43 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=30.1
Q ss_pred CCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEch
Q 016237 82 DPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125 (392)
Q Consensus 82 ~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~ 125 (392)
++-.+|+++|-|.-. .+.....+.+.++..+-|.|.++++
T Consensus 72 sPR~ADillVeG~VT----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTVN----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecCC----ccchHHHHHHHHHcccCCEEEEecc
Confidence 355799999998642 2335567778888889999999875
No 459
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.70 E-value=2.4e+02 Score=22.74 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=29.9
Q ss_pred CccEEEEcCCCCccccc-CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237 85 KYDGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~-~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 134 (392)
..|+|++-||.+....- .-.+..+++.+. .++.+.++|- ..+...+|
T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCf-m~mF~rag 132 (154)
T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCF-MNMFERAG 132 (154)
T ss_pred cccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeH-HHHHHHcC
Confidence 58999999998643322 234566666632 3567999996 33445555
No 460
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=22.62 E-value=1.4e+02 Score=29.46 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=56.6
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCC--CeEEEECCCCCCCCCCCccccCCCCccccccccc-CccccC-cCcCCCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG-HNFALN-ATFDEIDP 83 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~-~~~~~~~~ 83 (392)
++||+|+..+.-. .+..+...+.+.. +++.++... |++..- ..+..- ..++. .
T Consensus 129 p~~i~vits~~~a--a~~D~~~~~~~r~p~~~~~~~~~~-------------------vQG~~a~~~i~~al~~~~~--~ 185 (432)
T TIGR00237 129 PKRVGVITSQTGA--ALADILHILKRRDPSLKVVIYPTL-------------------VQGEGAVQSIVESIELANT--K 185 (432)
T ss_pred CCEEEEEeCCccH--HHHHHHHHHHhhCCCceEEEeccc-------------------ccCccHHHHHHHHHHHhhc--C
Confidence 6899999987544 3444455555543 455544332 222211 011111 11221 1
Q ss_pred CCccEEEEcCCCC-ccc--ccCCHHHHHHHHHHHhCCCe-EEEEchhh-HHhhcCcccCCeeEecCCC
Q 016237 84 SKYDGLVIPGGRA-PEY--LAMNDSVIDLVRKFSNSGKT-IASICHGQ-LILAAADVVKGRKCTAYPP 146 (392)
Q Consensus 84 ~~~D~iiipGG~~-~~~--~~~~~~l~~~l~~~~~~~~~-i~aic~G~-~~La~agll~g~~~T~~~~ 146 (392)
.++|+|||.=|-| .++ ..++..+. +..++...| |.+|+|=. +.|+ .+...+++.|+..
T Consensus 186 ~~~dviii~RGGGs~eDL~~Fn~e~~~---rai~~~~~Pvis~iGHe~D~ti~--D~vAd~ra~TPta 248 (432)
T TIGR00237 186 NECDVLIVGRGGGSLEDLWSFNDEKVA---RAIFLSKIPIISAVGHETDFTIS--DFVADLRAPTPSA 248 (432)
T ss_pred CCCCEEEEecCCCCHHHhhhcCcHHHH---HHHHcCCCCEEEecCcCCCccHH--HHhhhccCCCcHH
Confidence 2589999975554 333 33455554 444555555 77888854 2222 3555666666544
No 461
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.55 E-value=4.4e+02 Score=24.09 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=24.1
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhC-CCeEEEEch-hh
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS-GKTIASICH-GQ 127 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~-~~~i~aic~-G~ 127 (392)
+.|.+++-||.|+. ++.++.+... ..++.+|-. |.
T Consensus 39 ~~D~vi~lGGDGT~--------L~a~~~~~~~~~~pilgIn~~G~ 75 (264)
T PRK03501 39 NANIIVSIGGDGTF--------LQAVRKTGFREDCLYAGISTKDQ 75 (264)
T ss_pred CccEEEEECCcHHH--------HHHHHHhcccCCCeEEeEecCCC
Confidence 46899999997653 3444554443 678888888 63
No 462
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=22.54 E-value=53 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=21.3
Q ss_pred CCccEEEEeCCCCCc-----chhHHHHHHHHhcCCeEEEEcCC
Q 016237 200 SDKRILFLCGDYMED-----YEVAVPFQSLQALECHVDAVCPK 237 (392)
Q Consensus 200 ~~~~v~ill~~~~~~-----~e~~~~~~~~~~~~~~v~~~s~~ 237 (392)
+.||+.+++.+-.+. .-.-...-+|.-+|+.|+++-.+
T Consensus 59 ~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd 101 (535)
T KOG4435|consen 59 RPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTD 101 (535)
T ss_pred ccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecC
Confidence 467888887653321 11122333455668888888554
No 463
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=22.46 E-value=2.4e+02 Score=28.38 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCcCCCCccEEEEeCCCCCc---chh-H-HHHHHHHhcCCeEEEEcC
Q 016237 185 FIRLFLKALGGTITGSDKRILFLCGDYMED---YEV-A-VPFQSLQALECHVDAVCP 236 (392)
Q Consensus 185 ~~~~~i~~l~~~~~~~~~~v~ill~~~~~~---~e~-~-~~~~~~~~~~~~v~~~s~ 236 (392)
+...+.+.+... .+++++.+++.|..-- ... . .....|+.+++++++.-.
T Consensus 97 w~~~~~~~~~~~--~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T 151 (481)
T PLN02958 97 WCQKLRDYLDSL--GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQET 151 (481)
T ss_pred HHHHHHHHHhhc--cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEec
Confidence 344444444322 3567777777652221 111 1 244478888888776643
No 464
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=22.43 E-value=4.6e+02 Score=22.40 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=29.1
Q ss_pred CccEEEEeCCCCCcc----hhHHHHHHHHhcCCeEEEEcCC
Q 016237 201 DKRILFLCGDYMEDY----EVAVPFQSLQALECHVDAVCPK 237 (392)
Q Consensus 201 ~~~v~ill~~~~~~~----e~~~~~~~~~~~~~~v~~~s~~ 237 (392)
..|+.|++.||.+.. .+..+.+.++..|..+-.++..
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG 148 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVG 148 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEec
Confidence 589999999998854 3456677789999888888774
No 465
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=22.39 E-value=3.3e+02 Score=23.48 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=25.4
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHh-------CCCeEEEEchhh
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-------SGKTIASICHGQ 127 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~G~ 127 (392)
.+||+|++....- .-...+.+..|+.+... .+|+.+.++++.
T Consensus 67 ~~aD~ii~GSPty--~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 115 (197)
T TIGR01755 67 ADYDAIIFGTPTR--FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTG 115 (197)
T ss_pred HHCCEEEEEeccc--ccCccHHHHHHHHhccccccccccCCCEEEEEEECC
Confidence 4799999955321 11123567777776531 378888877643
No 466
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=22.39 E-value=1.2e+02 Score=24.43 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=28.4
Q ss_pred CCCcCEEEEcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 276 VSGYDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 276 ~~~~D~viipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
..+||.|++.... +.. ...+.+..|+++...++|.++.+++|
T Consensus 48 ~~~~d~iilgs~t~~~g--~~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 48 PENYDLVFLGTWTWERG--RTPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhhCCEEEEEcCeeCCC--cCCHHHHHHHHHhcccCCEEEEEEcC
Confidence 3468999986631 211 12346777887766688999888877
No 467
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=22.35 E-value=1.4e+02 Score=24.91 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=50.2
Q ss_pred CCEEEEEecCCCCc---cchHHHHHHHHhCC---CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCC
Q 016237 8 KRSVLLLCGDYMED---YEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI 81 (392)
Q Consensus 8 ~~kI~ill~~g~~~---~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (392)
+.||+|+....... .=+.+..+.|.+.| .+++++...| ...+.+....-..
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPG---------------------a~EiP~a~~~l~~-- 68 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPG---------------------AFEIPLAAKKLAE-- 68 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCC---------------------HHHHHHHHHHHHH--
Confidence 56999999875553 34567778888888 5566665432 1112222221111
Q ss_pred CCCCccEEEEcCCC--Cc--cc-ccCCHHHHHHHHHHHhCCCeEE
Q 016237 82 DPSKYDGLVIPGGR--AP--EY-LAMNDSVIDLVRKFSNSGKTIA 121 (392)
Q Consensus 82 ~~~~~D~iiipGG~--~~--~~-~~~~~~l~~~l~~~~~~~~~i~ 121 (392)
..+||+++.-|-- |- .+ ...+.-...+.+-..+.++||+
T Consensus 69 -~~~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~ 112 (154)
T PRK00061 69 -SGKYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLETGVPVG 112 (154)
T ss_pred -cCCCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHHhccCCCEE
Confidence 2369999998853 21 11 2223334445555556777765
No 468
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=22.27 E-value=4e+02 Score=22.22 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=28.0
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKS 47 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~ 47 (392)
.+||+||-...|.- --..+.+.|.+.|+.|.+-|.+.-|
T Consensus 57 ~~~vLVLGTgEfMy-~Pl~lA~~Le~~g~~V~~qSTTRSP 95 (155)
T PF12500_consen 57 GERVLVLGTGEFMY-LPLLLAEELEQAGADVRYQSTTRSP 95 (155)
T ss_pred CCcEEEEccchHHH-HHHHHHHHHHhcCCceEEeCCCCCC
Confidence 46899887765543 3334556777888999999988755
No 469
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=22.24 E-value=1.5e+02 Score=28.11 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=60.1
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD 87 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D 87 (392)
.+|++|+.-++....-.....+.|..+|+++.++...++...+. +..- .++. ..+.+....+.|
T Consensus 24 ~~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~------------~~~v--~~~~--~~~~~~~~~r~d 87 (345)
T cd08195 24 GSKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKS------------LETL--EKLY--DALLEAGLDRKS 87 (345)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCC------------HHHH--HHHH--HHHHHcCCCCCC
Confidence 36888887666654334455677778887777554332211110 0000 0000 011222233568
Q ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-cccCCeeEecC
Q 016237 88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAY 144 (392)
Q Consensus 88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-gll~g~~~T~~ 144 (392)
.|+-.||-.+.+ +-.++...+.++.++..|.+-. ++.. .-..|+....+
T Consensus 88 ~IIaiGGGsv~D------~ak~vA~~~~rgip~i~VPTT~--~a~vds~~~~k~~i~~ 137 (345)
T cd08195 88 LIIALGGGVVGD------LAGFVAATYMRGIDFIQIPTTL--LAQVDSSVGGKTGVNH 137 (345)
T ss_pred eEEEECChHHHh------HHHHHHHHHhcCCCeEEcchhH--HHHhhccCCCcceecC
Confidence 999888854433 4456666677899999998754 3332 23455544443
No 470
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.92 E-value=99 Score=27.78 Aligned_cols=84 Identities=10% Similarity=-0.001 Sum_probs=47.7
Q ss_pred EEEEEecC---CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY 86 (392)
Q Consensus 10 kI~ill~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 86 (392)
||++++.+ .|...-..+..+.+++.|+++.+......+ ... ...++.+.....
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~-------------------~~~-----~~~i~~~~~~~~ 56 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGDL-------------------TKQ-----IADVEDLLTRGV 56 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCH-------------------HHH-----HHHHHHHHHcCC
Confidence 47888753 333444557778888899998776543221 000 001222223468
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEc
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 124 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic 124 (392)
|+|++.+.. ...+.+.++++.+.+.|+..+.
T Consensus 57 Dgiii~~~~-------~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 57 NVLIINPVD-------PEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred CEEEEecCC-------ccchHHHHHHHHHCCCCEEEec
Confidence 999995421 1223345677777788888774
No 471
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.83 E-value=1e+02 Score=28.76 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=52.4
Q ss_pred CCEEEEEecC----CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237 8 KRSVLLLCGD----YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP 83 (392)
Q Consensus 8 ~~kI~ill~~----g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (392)
++|+.+++-+ +-..-.+....+.|+++|+++...-.... ++. ..-..++..
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~-g~a------------------------~~~a~~a~~ 56 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEA-GDA------------------------IEIAREAAV 56 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecC-ccH------------------------HHHHHHHHh
Confidence 3566666643 23345677788899999998887665432 110 001122222
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCe-EEEEchhh
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT-IASICHGQ 127 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~-i~aic~G~ 127 (392)
..||.|++.||.|+- .+.+...++++.+ ++-+=.|+
T Consensus 57 ~~~D~via~GGDGTv--------~evingl~~~~~~~LgilP~GT 93 (301)
T COG1597 57 EGYDTVIAAGGDGTV--------NEVANGLAGTDDPPLGILPGGT 93 (301)
T ss_pred cCCCEEEEecCcchH--------HHHHHHHhcCCCCceEEecCCc
Confidence 379999999998753 3345566666776 66665555
No 472
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.78 E-value=4.6e+02 Score=21.64 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCCEEEEEecCCCCccch-HHHHHHHHhCCCeEEEECCCC
Q 016237 7 GKRSVLLLCGDYMEDYEA-MVPFQALLAFGVSVDAACPGK 45 (392)
Q Consensus 7 ~~~kI~ill~~g~~~~e~-~~~~~~l~~ag~~v~~~s~~~ 45 (392)
..+||+|+-.- ++ ..-...|.++|.+|.+++++-
T Consensus 12 ~~~~vlVvGGG-----~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 12 HNKVVVIIGGG-----KIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHhCCCEEEEEcCcc
Confidence 35777777532 22 223567778999999998763
No 473
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=21.76 E-value=5.9e+02 Score=22.84 Aligned_cols=94 Identities=14% Similarity=0.014 Sum_probs=49.5
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccc---cccCCCCC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTA---NFESVDVS 277 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~---~~~~~~~~ 277 (392)
.+++.++...--. --....+.|+..|++|.-..--+...+. . + ..+.++. ...+.+.+
T Consensus 120 ~~RIalvTPY~~~--v~~~~~~~l~~~G~eV~~~~~~~~~~~~-----------~-i-----a~i~p~~i~~~~~~~~~~ 180 (239)
T TIGR02990 120 VRRISLLTPYTPE--TSRPMAQYFAVRGFEIVNFTCLGLTDDR-----------E-M-----ARISPDCIVEAALAAFDP 180 (239)
T ss_pred CCEEEEECCCcHH--HHHHHHHHHHhCCcEEeeeeccCCCCCc-----------e-e-----eecCHHHHHHHHHHhcCC
Confidence 4467776653222 3334667788999998777433321000 0 0 0111111 22223346
Q ss_pred CcCEEEEcCCCChhhccCChHHHHHHHHHH-HcCCcEEEEehHHH
Q 016237 278 GYDALVVPGGRAPEYLALNENVIALVKDFM-EAKKPVASICHGQQ 321 (392)
Q Consensus 278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~-~~g~~i~aiC~G~~ 321 (392)
+.|+||+++- + -+..+.|.+.- +-||||.+.-...+
T Consensus 181 ~aDAifisCT-n-------Lrt~~vi~~lE~~lGkPVlsSNqat~ 217 (239)
T TIGR02990 181 DADALFLSCT-A-------LRAATCAQRIEQAIGKPVVTSNQATA 217 (239)
T ss_pred CCCEEEEeCC-C-------chhHHHHHHHHHHHCCCEEEHHHHHH
Confidence 7999999862 2 22333443332 35999988877664
No 474
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=21.53 E-value=4.7e+02 Score=21.65 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=30.0
Q ss_pred CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcC
Q 016237 201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCP 236 (392)
Q Consensus 201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~ 236 (392)
.+|+.+++.+|.+.-++..+...++..|..+-.++.
T Consensus 106 ~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~ 141 (165)
T cd01481 106 VPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGA 141 (165)
T ss_pred CCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC
Confidence 568999999999988888899999999977666654
No 475
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.43 E-value=7.6e+02 Score=24.02 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.7
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (392)
+|||++.+.=.............|.+.|++|+++-..
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~ 39 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTE 39 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECH
Confidence 5789988877666677888889999999999877654
No 476
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=21.35 E-value=83 Score=29.10 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=20.3
Q ss_pred EEEEecCCC-CccchHHHHHHHHhCCCeEEEECC
Q 016237 11 VLLLCGDYM-EDYEAMVPFQALLAFGVSVDAACP 43 (392)
Q Consensus 11 I~ill~~g~-~~~e~~~~~~~l~~ag~~v~~~s~ 43 (392)
+.+++-+.. ....+....+.|+++|+++++...
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t 35 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGIQLHVRVT 35 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCCeEEEEEe
Confidence 455554432 223455667788899998877643
No 477
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.27 E-value=1.4e+02 Score=25.14 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=25.2
Q ss_pred CcCEEEEcCCCChhh---------------ccCChHHHHHHHHHHHcCC
Q 016237 278 GYDALVVPGGRAPEY---------------LALNENVIALVKDFMEAKK 311 (392)
Q Consensus 278 ~~D~viipgg~~~~~---------------~~~~~~l~~~l~~~~~~g~ 311 (392)
++|+||+.||.|+.. +..++++.+.|++++.+..
T Consensus 58 ~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~~~ 106 (170)
T cd00885 58 RADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEALERIEARFARRG 106 (170)
T ss_pred CCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHHHHHHHHHHHhcC
Confidence 689999999887421 2567888888888776544
No 478
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=21.15 E-value=1.4e+02 Score=25.76 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=25.8
Q ss_pred CCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEeh
Q 016237 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICH 318 (392)
Q Consensus 275 ~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~ 318 (392)
++.++|+++|.|--. .+..+.+.-+.++..+-|.|+|+++
T Consensus 70 sPR~ADvllVtG~VT----~~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 70 SPRQADMILVLGTIT----YKMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred CcccceEEEEeccCc----hhhHHHHHHHHHhcCCCCeEEEecc
Confidence 567899999988433 2234444445555556888888853
No 479
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=21.14 E-value=3.1e+02 Score=24.98 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=31.3
Q ss_pred CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCC
Q 016237 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (392)
Q Consensus 9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (392)
|||++-==||....-+..+.+.|++.| +|.++.|...
T Consensus 6 M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 6 PHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 566666668999999999999999987 8999999854
No 480
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.09 E-value=5.3e+02 Score=23.33 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=23.1
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
+.|++++-||.|+.- +.++.+ ++||.+|-.|.
T Consensus 41 ~~d~vi~iGGDGT~L--------~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 41 TADLIIVVGGDGTVL--------KAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred CCCEEEEECCcHHHH--------HHHHHc---CCCEEEEeCCC
Confidence 579999999987542 222322 89999999775
No 481
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.84 E-value=4.5e+02 Score=23.08 Aligned_cols=37 Identities=11% Similarity=-0.058 Sum_probs=26.9
Q ss_pred CccEEEEeCC-CCCcchhHHHHHHHHhcCCeEEEEcCC
Q 016237 201 DKRILFLCGD-YMEDYEVAVPFQSLQALECHVDAVCPK 237 (392)
Q Consensus 201 ~~~v~ill~~-~~~~~e~~~~~~~~~~~~~~v~~~s~~ 237 (392)
..++.+...+ ...+.........|+..||+|..+..+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 3455555444 566666777888899999999998765
No 482
>PTZ00188 adrenodoxin reductase; Provisional
Probab=20.77 E-value=1.8e+02 Score=29.29 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=48.4
Q ss_pred CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCc--------------ccccccccCcc
Q 016237 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH--------------QTYSETRGHNF 72 (392)
Q Consensus 7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~--------------~~~~~~~g~~~ 72 (392)
.++||+|+- .-+..+......+.+.|++|+++-....|.......+...... ..+.-..+..+
T Consensus 38 ~~krVAIVG---aGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 38 KPFKVGIIG---AGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CCCEEEEEC---CcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 357898884 4444566666677778999999987765533222111110000 01111123455
Q ss_pred ccCcCcCCCCCCCccEEEEcCCC
Q 016237 73 ALNATFDEIDPSKYDGLVIPGGR 95 (392)
Q Consensus 73 ~~~~~~~~~~~~~~D~iiipGG~ 95 (392)
-.+.+++++. ..||+||+.=|.
T Consensus 115 G~Dvt~eeL~-~~YDAVIlAtGA 136 (506)
T PTZ00188 115 GVDLKMEELR-NHYNCVIFCCGA 136 (506)
T ss_pred cCccCHHHHH-hcCCEEEEEcCC
Confidence 5566677764 379999996663
No 483
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.73 E-value=1.4e+02 Score=27.17 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhh
Q 016237 84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127 (392)
Q Consensus 84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~ 127 (392)
+++|.+++-||.|+ +++.++.+...+.||.+|-.|.
T Consensus 32 ~~~D~vi~iGGDGT--------~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF--------FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH--------HHHHHHHhcCCCCcEEEEecCC
Confidence 36899999999764 3445566667889999999885
No 484
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=7e+02 Score=23.32 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=67.9
Q ss_pred eeecCceEecCCCCChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCC
Q 016237 167 CVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPT 246 (392)
Q Consensus 167 ~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~ 246 (392)
.+.||.+|..-+-+.+ .+.++.... ...+++-+++.+..-..+-....+.|+..|.++.++...-
T Consensus 116 ~i~dg~~IlTh~~S~~---v~~~l~~A~----~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa-------- 180 (301)
T COG1184 116 RIHDGDVILTHSFSKT---VLEVLKTAA----DRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSA-------- 180 (301)
T ss_pred hccCCCEEEEecCcHH---HHHHHHHhh----hcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechH--------
Confidence 4567877776663332 333333222 2345578888887777788889999999998877775430
Q ss_pred cccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh--h-hccCChHHHHHHHHHHHcCCcEEEEehH
Q 016237 247 AVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP--E-YLALNENVIALVKDFMEAKKPVASICHG 319 (392)
Q Consensus 247 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~--~-~~~~~~~l~~~l~~~~~~g~~i~aiC~G 319 (392)
-+ .+ .++.|.|++ |..+. + .+...--......-+++.++|+.+.|.-
T Consensus 181 --------------~~-------~~----~~~vd~Viv-Gad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aes 230 (301)
T COG1184 181 --------------VG-------AF----MSRVDKVLV-GADAILANGALVNKIGTSPLALAARELRVPFYVVAES 230 (301)
T ss_pred --------------HH-------HH----HHhCCEEEE-CccceecCCcEEeccchHHHHHHHHHhCCCEEEEeee
Confidence 00 01 125688877 43331 1 2333344445555677889999988854
No 485
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=20.38 E-value=1.7e+02 Score=25.11 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchh
Q 016237 82 DPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126 (392)
Q Consensus 82 ~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G 126 (392)
++..+|+++|-|.-.. +....++.+.++..+-|+|.++++-
T Consensus 71 sPr~aDvllV~G~vt~----~~~~~l~~~~e~mp~pk~VIA~GaC 111 (183)
T PRK06411 71 SPRQADLMIVAGTLTN----KMAPALRRLYDQMPEPKWVISMGSC 111 (183)
T ss_pred CCCceeEEEEEeCCCc----cchHHHHHHHHHcCcCCeEEEEecc
Confidence 3557999999997522 2355556666667779999988753
No 486
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=20.21 E-value=1.5e+02 Score=28.27 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=72.3
Q ss_pred CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcc---cccccccCccccCcCcCCCCCC
Q 016237 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ---TYSETRGHNFALNATFDEIDPS 84 (392)
Q Consensus 8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~ 84 (392)
-+||+++-.+|+.+..-....+-|+++|..++....+-...+.-+..-+..+..+ ..........-.+ .+.++ ..
T Consensus 138 ~~ri~vvGieg~~DFqp~l~Aa~L~~a~~~~~t~~l~iP~ld~LR~n~~efR~vNiarlLd~~~~~~~L~d-~l~~~-a~ 215 (421)
T COG3075 138 AKRIAVVGIEGLHDFQPQLAAANLRQAGLPVTTAELNLPELDVLRDNATEFRAVNIARLLDNEEAWPALAD-ELIPV-AN 215 (421)
T ss_pred chheEEEeeccccccCHHHHHHHHHHcCCcceeccccCCChhhhhcCchhhhhcCHHHHhcchhhhHHHHH-HHHHh-cC
Confidence 4799999999999888888999999999777766554211110000000000000 0000000000000 01111 34
Q ss_pred CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCC
Q 016237 85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET 163 (392)
Q Consensus 85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~ 163 (392)
..|+|++|.-.| .++..+.+||++.. +..+.-+=+.+- .|| |.| -|-.....|+..|+.+.+.+.
T Consensus 216 ~ad~V~~PAc~G----ld~~~~~~aL~~~~--~~~l~elPtlPP-----Sll-GiR--l~~~L~~~f~~~Gg~~m~Gd~ 280 (421)
T COG3075 216 TAEMVLMPACFG----LDNDELWDALNDVL--GLALFELPTLPP-----SLL-GIR--LHNQLQRQFEQLGGLWMPGDE 280 (421)
T ss_pred CcceEeeceeeC----CCcHHHHHHHHHHh--CCceeecCCCCc-----chh-hhh--HHHHHHHHHHHcCceEecCCc
Confidence 689999999877 24678888988875 232322222221 111 111 122234455567888887765
No 487
>PRK13337 putative lipid kinase; Reviewed
Probab=20.15 E-value=1.7e+02 Score=27.26 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=9.9
Q ss_pred CcCEEEEcCCCChh
Q 016237 278 GYDALVVPGGRAPE 291 (392)
Q Consensus 278 ~~D~viipgg~~~~ 291 (392)
+.-+-+||+|.+.+
T Consensus 83 ~~~lgiiP~GT~Nd 96 (304)
T PRK13337 83 RPKLGIIPVGTTND 96 (304)
T ss_pred CCcEEEECCcCHhH
Confidence 34577899998743
No 488
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=20.08 E-value=9.7e+02 Score=24.71 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=65.2
Q ss_pred cEEEEcCCCCcccccCCHHHHHHHHHHHh--CCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCc
Q 016237 87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 164 (392)
Q Consensus 87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~--~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~ 164 (392)
=+|+..||..+-. |..+...++.... .+..+.++-+|.. ||++++-+--.......+...|+...
T Consensus 99 IGIv~sGG~APG~---nnvI~Gv~~~a~~~~~~~~vyG~~~G~~-----GLl~~~~v~Lt~~~v~~~~n~GG~dl----- 165 (568)
T PLN02251 99 IGVVLSGGQAPGG---HNVISGIFDYLQEHAKGSVLYGFKGGPA-----GIMKCKYVELTAEFIYPYRNQGGFDM----- 165 (568)
T ss_pred EEEECcCCCchhH---HHHHHHHHHHHHHhCCCCEEEEEccChH-----HhcCCCeEECCHHHhhhhhhCCCceE-----
Confidence 4677777764421 3344444444433 3667888888886 77777554443333333333333211
Q ss_pred ceeeecCceEecCCCCChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcC
Q 016237 165 AACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCP 236 (392)
Q Consensus 165 ~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~ 236 (392)
+-||+......+-...+++.+..- .....+++.-+-+......+.+.|.+.|+.+.++..
T Consensus 166 --------LGS~R~k~~~~e~~~~~~~~l~~l----~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGV 225 (568)
T PLN02251 166 --------ICSGRDKIETPEQFKQAEETATKL----DLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGC 225 (568)
T ss_pred --------ecccCCCcCCHHHHHHHHHHHHHc----CCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEe
Confidence 234444322222233333333221 223455555555555666677788888887777754
Done!