BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016239
         (392 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
          Length = 306

 Score = 34.7 bits (78), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 188 AVEIYDPHSDSW-ELCPPLPADFRSGYSSQYLSSALFR--GRFYVFGIYSFSVSSFDLKK 244
           + E+YDP +++W ELCP + A  R  +   ++   +F   G+  + G+   +V  +D+K 
Sbjct: 170 SCEVYDPATETWTELCPMIEA--RKNHGLVFVKDKIFAVGGQNGLGGL--DNVEYYDIKL 225

Query: 245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPR 280
           + W  V  +   GV          + VLAG     R
Sbjct: 226 NEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGR 261


>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
          Length = 301

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 189 VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIY 233
           VE YDP +  W   P +    R      Y++S     R YV G Y
Sbjct: 33  VEKYDPKTQEWSFLPSITRKRR------YVASVSLHDRIYVIGGY 71


>pdb|3A0F|A Chain A, The Crystal Structure Of Geotrichum Sp. M128 Xyloglucanase
          Length = 763

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 9/39 (23%)

Query: 60  SPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQE 98
           +P PW  L+G         + +++DP + +W H+ P++E
Sbjct: 266 APGPWGVLYG---------EVWSYDPTNGNWKHITPSRE 295


>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
          Length = 53

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 6  PYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
          P  ++ +L  ++   I S L +P L++ S VCK W  + S  S 
Sbjct: 5  PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48


>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure
          Of The Skp1-Skp2 Complex
 pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
 pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
          P27 Peptide
          Length = 336

 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 6  PYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
          P  ++ +L  ++   I S L +P L++ S VCK W  + S  S 
Sbjct: 5  PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,596,335
Number of Sequences: 62578
Number of extensions: 455058
Number of successful extensions: 787
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 15
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)