Query 016239
Match_columns 392
No_of_seqs 230 out of 2386
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:04:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.3E-40 2.9E-45 323.1 30.7 268 60-378 282-567 (571)
2 PHA02713 hypothetical protein; 100.0 3E-37 6.5E-42 301.0 27.3 237 78-366 272-543 (557)
3 KOG4441 Proteins containing BT 100.0 3E-35 6.5E-40 285.7 21.1 245 26-305 299-558 (571)
4 PHA02713 hypothetical protein; 100.0 4.5E-34 9.7E-39 278.8 19.4 241 30-302 274-543 (557)
5 PLN02153 epithiospecifier prot 100.0 3E-32 6.4E-37 252.7 25.5 267 38-340 7-326 (341)
6 TIGR03547 muta_rot_YjhT mutatr 100.0 5.4E-32 1.2E-36 251.9 27.1 250 93-376 1-318 (346)
7 PHA03098 kelch-like protein; P 100.0 7.5E-32 1.6E-36 265.1 29.4 262 62-374 250-529 (534)
8 PLN02153 epithiospecifier prot 100.0 8.4E-32 1.8E-36 249.7 27.3 245 85-376 4-309 (341)
9 TIGR03548 mutarot_permut cycli 100.0 2.5E-31 5.3E-36 244.8 25.6 240 59-339 10-314 (323)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 6.2E-31 1.3E-35 244.7 26.9 242 58-339 13-332 (346)
11 PLN02193 nitrile-specifier pro 100.0 2.2E-30 4.8E-35 248.8 31.2 259 61-366 119-420 (470)
12 PHA02790 Kelch-like protein; P 100.0 5.1E-31 1.1E-35 253.9 23.6 203 60-299 269-477 (480)
13 PRK14131 N-acetylneuraminic ac 100.0 3.9E-30 8.5E-35 241.1 27.5 259 57-355 33-371 (376)
14 PRK14131 N-acetylneuraminic ac 100.0 3.7E-30 8E-35 241.3 26.3 255 90-376 19-340 (376)
15 PLN02193 nitrile-specifier pro 100.0 6.9E-30 1.5E-34 245.4 26.6 264 38-339 151-454 (470)
16 PHA03098 kelch-like protein; P 100.0 3E-30 6.5E-35 253.8 22.3 238 34-306 270-525 (534)
17 PHA02790 Kelch-like protein; P 100.0 1.4E-29 2.9E-34 244.0 24.8 198 105-363 267-477 (480)
18 KOG4693 Uncharacterized conser 100.0 3.4E-28 7.3E-33 202.6 18.5 244 55-338 16-312 (392)
19 TIGR03548 mutarot_permut cycli 100.0 9.9E-28 2.1E-32 220.9 20.5 212 39-280 52-316 (323)
20 KOG4693 Uncharacterized conser 99.9 5.5E-26 1.2E-30 189.4 19.5 236 99-378 13-301 (392)
21 KOG0379 Kelch repeat-containin 99.9 3.1E-20 6.6E-25 178.3 22.6 238 94-374 55-323 (482)
22 KOG4152 Host cell transcriptio 99.9 1.7E-20 3.6E-25 169.7 18.7 267 39-337 18-341 (830)
23 KOG1230 Protein containing rep 99.9 2.2E-20 4.8E-25 165.0 17.2 233 94-363 61-347 (521)
24 KOG0379 Kelch repeat-containin 99.8 2.4E-19 5.1E-24 172.2 23.1 218 57-303 65-312 (482)
25 KOG1230 Protein containing rep 99.8 7E-19 1.5E-23 155.6 17.6 258 9-299 32-347 (521)
26 KOG4152 Host cell transcriptio 99.7 7.6E-17 1.6E-21 146.3 16.8 244 87-378 16-331 (830)
27 TIGR01640 F_box_assoc_1 F-box 99.6 9E-14 1.9E-18 121.8 22.4 200 107-336 3-215 (230)
28 COG3055 Uncharacterized protei 99.6 1.1E-13 2.5E-18 121.2 18.0 245 92-372 29-342 (381)
29 COG3055 Uncharacterized protei 99.6 2.5E-13 5.5E-18 119.0 18.1 256 43-342 30-363 (381)
30 PLN03215 ascorbic acid mannose 99.3 1.4E-09 3E-14 99.1 20.8 124 196-336 189-337 (373)
31 PF13964 Kelch_6: Kelch motif 98.9 4E-09 8.6E-14 68.1 5.9 49 138-208 1-49 (50)
32 PF13964 Kelch_6: Kelch motif 98.8 1.8E-08 4E-13 65.0 5.6 48 319-370 2-50 (50)
33 KOG2437 Muskelin [Signal trans 98.8 4.1E-09 8.8E-14 96.5 3.4 304 14-338 212-593 (723)
34 PF12937 F-box-like: F-box-lik 98.7 1.2E-08 2.6E-13 64.8 4.1 43 10-52 1-43 (47)
35 PF01344 Kelch_1: Kelch motif; 98.7 2.3E-08 5E-13 63.6 4.4 47 138-206 1-47 (47)
36 KOG2437 Muskelin [Signal trans 98.7 1.1E-08 2.3E-13 93.8 2.6 185 126-340 238-459 (723)
37 PF01344 Kelch_1: Kelch motif; 98.6 1.6E-07 3.4E-12 59.8 5.8 46 258-303 2-47 (47)
38 PF07646 Kelch_2: Kelch motif; 98.5 3.2E-07 6.9E-12 58.8 5.6 49 138-206 1-49 (49)
39 PF08268 FBA_3: F-box associat 98.4 5.9E-06 1.3E-10 65.1 12.6 86 221-306 2-95 (129)
40 PF00646 F-box: F-box domain; 98.4 1.2E-07 2.7E-12 60.5 2.1 44 9-52 2-45 (48)
41 PF07646 Kelch_2: Kelch motif; 98.4 6.7E-07 1.4E-11 57.3 5.2 46 258-303 2-49 (49)
42 PF13418 Kelch_4: Galactose ox 98.4 7.4E-07 1.6E-11 57.1 4.7 48 138-206 1-48 (49)
43 PF13415 Kelch_3: Galactose ox 98.3 1.4E-06 3E-11 55.8 5.4 46 62-107 1-48 (49)
44 smart00256 FBOX A Receptor for 98.3 5.6E-07 1.2E-11 55.2 3.1 39 13-51 1-39 (41)
45 smart00612 Kelch Kelch domain. 98.3 1.4E-06 3.1E-11 55.1 5.0 46 65-110 2-47 (47)
46 smart00612 Kelch Kelch domain. 98.3 1.9E-06 4.1E-11 54.6 5.4 47 167-225 1-47 (47)
47 PF13418 Kelch_4: Galactose ox 98.2 1.4E-06 3E-11 55.8 4.0 46 259-304 3-49 (49)
48 PF13415 Kelch_3: Galactose ox 98.2 1.8E-06 4E-11 55.2 4.4 47 328-378 1-49 (49)
49 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00019 4E-09 62.3 14.8 155 188-370 47-212 (243)
50 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00017 3.6E-09 62.6 11.7 146 80-255 48-210 (243)
51 TIGR01640 F_box_assoc_1 F-box 97.8 0.005 1.1E-07 53.7 19.4 163 188-367 15-188 (230)
52 PLN02772 guanylate kinase 97.8 0.0002 4.3E-09 66.2 10.2 81 137-245 23-110 (398)
53 KOG0281 Beta-TrCP (transducin 97.7 0.0037 8E-08 55.6 16.4 43 10-52 75-121 (499)
54 PF13360 PQQ_2: PQQ-like domai 97.5 0.049 1.1E-06 47.5 23.3 210 79-361 4-237 (238)
55 PF13854 Kelch_5: Kelch motif 97.5 0.00023 5E-09 43.6 4.8 41 135-196 1-41 (42)
56 PLN02772 guanylate kinase 97.5 0.0008 1.7E-08 62.2 9.4 73 218-293 28-109 (398)
57 KOG2120 SCF ubiquitin ligase, 97.4 0.00012 2.5E-09 64.1 2.9 49 4-52 92-140 (419)
58 PRK11138 outer membrane biogen 97.4 0.095 2.1E-06 49.8 22.8 191 78-335 170-383 (394)
59 PRK11138 outer membrane biogen 97.3 0.13 2.8E-06 48.9 23.2 226 59-362 66-320 (394)
60 PF10282 Lactonase: Lactonase, 97.1 0.23 4.9E-06 46.3 22.8 152 188-364 167-332 (345)
61 PF13854 Kelch_5: Kelch motif 97.1 0.001 2.2E-08 40.7 4.4 37 257-293 4-41 (42)
62 KOG0274 Cdc4 and related F-box 97.1 0.15 3.2E-06 50.2 21.0 45 8-52 106-150 (537)
63 PF07893 DUF1668: Protein of u 97.0 0.022 4.8E-07 52.8 14.4 129 223-368 75-221 (342)
64 PF07734 FBA_1: F-box associat 97.0 0.0056 1.2E-07 50.3 9.4 82 220-303 1-94 (164)
65 PF07893 DUF1668: Protein of u 96.9 0.03 6.4E-07 51.9 14.3 126 108-252 75-216 (342)
66 PRK11028 6-phosphogluconolacto 96.7 0.48 1E-05 43.7 24.6 122 225-368 187-318 (330)
67 TIGR03300 assembly_YfgL outer 96.6 0.65 1.4E-05 43.8 22.6 192 78-336 155-369 (377)
68 PF10282 Lactonase: Lactonase, 96.6 0.34 7.4E-06 45.1 18.9 122 218-355 147-280 (345)
69 PF08450 SGL: SMP-30/Gluconola 96.6 0.47 1E-05 41.7 18.7 187 78-303 22-223 (246)
70 PF13360 PQQ_2: PQQ-like domai 96.5 0.52 1.1E-05 40.9 19.7 184 61-297 35-237 (238)
71 TIGR03300 assembly_YfgL outer 96.3 1 2.2E-05 42.4 23.1 203 60-335 63-286 (377)
72 PF05096 Glu_cyclase_2: Glutam 95.6 0.13 2.8E-06 45.1 9.9 152 165-355 55-206 (264)
73 KOG2055 WD40 repeat protein [G 95.2 0.8 1.7E-05 42.8 13.7 162 165-366 224-388 (514)
74 smart00284 OLF Olfactomedin-li 94.9 2.4 5.2E-05 37.2 16.5 159 165-355 34-211 (255)
75 PF03089 RAG2: Recombination a 94.5 1.6 3.4E-05 38.5 13.1 106 130-289 79-187 (337)
76 PF12768 Rax2: Cortical protei 94.5 0.61 1.3E-05 41.8 11.1 109 235-365 16-130 (281)
77 PF12768 Rax2: Cortical protei 94.4 0.78 1.7E-05 41.1 11.7 104 185-301 14-130 (281)
78 KOG2997 F-box protein FBX9 [Ge 94.4 0.025 5.4E-07 50.1 2.2 43 10-52 107-154 (366)
79 PF14870 PSII_BNR: Photosynthe 94.2 4.3 9.2E-05 36.9 16.6 200 80-336 83-294 (302)
80 PRK11028 6-phosphogluconolacto 94.0 4.9 0.00011 37.0 23.5 20 225-244 138-157 (330)
81 PF02191 OLF: Olfactomedin-lik 94.0 4.1 8.9E-05 35.9 16.3 157 165-355 30-206 (250)
82 PRK13684 Ycf48-like protein; P 93.9 5.2 0.00011 37.1 16.6 114 193-336 200-321 (334)
83 PF02191 OLF: Olfactomedin-lik 93.4 1.6 3.6E-05 38.4 11.6 144 224-381 30-181 (250)
84 smart00284 OLF Olfactomedin-li 93.4 2.6 5.6E-05 37.0 12.6 146 224-381 34-186 (255)
85 KOG0310 Conserved WD40 repeat- 93.3 1 2.2E-05 42.4 10.5 126 188-341 49-177 (487)
86 PF03178 CPSF_A: CPSF A subuni 93.1 3.5 7.7E-05 37.8 14.1 135 187-351 62-203 (321)
87 TIGR03866 PQQ_ABC_repeats PQQ- 93.0 6.2 0.00013 35.1 17.1 91 165-275 42-133 (300)
88 KOG0310 Conserved WD40 repeat- 92.7 4.3 9.4E-05 38.3 13.6 67 219-294 160-227 (487)
89 KOG2055 WD40 repeat protein [G 92.7 5.5 0.00012 37.5 14.1 180 65-289 227-416 (514)
90 PF05096 Glu_cyclase_2: Glutam 92.5 3 6.5E-05 36.8 11.8 93 223-337 54-148 (264)
91 PLN00033 photosystem II stabil 92.5 10 0.00022 36.1 18.4 114 192-335 265-388 (398)
92 PRK04792 tolB translocation pr 92.0 12 0.00027 36.1 23.4 103 187-301 286-391 (448)
93 PRK00178 tolB translocation pr 91.5 14 0.0003 35.5 22.6 103 187-301 267-372 (430)
94 KOG0278 Serine/threonine kinas 91.3 4.9 0.00011 34.8 11.3 63 224-292 235-299 (334)
95 PF08450 SGL: SMP-30/Gluconola 91.2 9.6 0.00021 33.3 15.2 111 165-299 11-129 (246)
96 PTZ00421 coronin; Provisional 90.9 17 0.00037 35.7 17.2 23 224-246 179-201 (493)
97 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.8 4.8 0.0001 39.9 12.7 123 218-362 63-197 (527)
98 COG4257 Vgb Streptogramin lyas 90.2 13 0.00027 33.0 14.0 73 223-301 242-314 (353)
99 COG4946 Uncharacterized protei 89.6 20 0.00042 34.3 16.7 58 188-252 383-440 (668)
100 PRK13684 Ycf48-like protein; P 89.2 18 0.0004 33.4 21.3 92 195-300 160-252 (334)
101 KOG0286 G-protein beta subunit 88.6 17 0.00037 32.3 15.0 112 165-295 108-220 (343)
102 PRK04922 tolB translocation pr 88.6 24 0.00052 34.0 22.2 103 187-301 272-377 (433)
103 COG4257 Vgb Streptogramin lyas 88.4 17 0.00038 32.2 16.8 222 80-364 85-313 (353)
104 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.4 12 0.00026 37.1 13.4 120 165-298 69-197 (527)
105 cd00216 PQQ_DH Dehydrogenases 87.7 29 0.00064 34.0 19.9 110 105-249 57-191 (488)
106 cd00216 PQQ_DH Dehydrogenases 87.6 30 0.00065 33.9 16.7 54 220-276 402-457 (488)
107 KOG0289 mRNA splicing factor [ 87.5 11 0.00023 35.4 11.3 123 218-368 351-474 (506)
108 PF03178 CPSF_A: CPSF A subuni 87.3 10 0.00022 34.8 11.7 102 165-291 98-203 (321)
109 PTZ00420 coronin; Provisional 87.2 24 0.00051 35.3 14.5 23 224-246 178-200 (568)
110 cd00094 HX Hemopexin-like repe 87.2 17 0.00036 30.6 17.8 108 225-354 63-177 (194)
111 COG2706 3-carboxymuconate cycl 86.8 25 0.00054 32.2 24.8 131 224-370 155-296 (346)
112 PF14870 PSII_BNR: Photosynthe 86.0 27 0.00058 31.8 19.0 199 84-336 43-251 (302)
113 cd00094 HX Hemopexin-like repe 85.3 21 0.00046 30.0 16.6 62 224-295 110-178 (194)
114 PRK05137 tolB translocation pr 85.3 37 0.00079 32.7 24.4 102 187-300 270-374 (435)
115 COG1520 FOG: WD40-like repeat 85.3 33 0.00071 32.2 17.2 154 106-301 65-228 (370)
116 KOG0315 G-protein beta subunit 85.0 25 0.00055 30.6 18.1 139 188-355 147-291 (311)
117 PRK00178 tolB translocation pr 84.3 40 0.00087 32.3 21.2 176 78-294 223-408 (430)
118 KOG0649 WD40 repeat protein [G 83.7 29 0.00062 30.2 12.9 114 165-305 126-248 (325)
119 TIGR02800 propeller_TolB tol-p 82.2 47 0.001 31.5 22.1 102 187-300 258-362 (417)
120 PRK04043 tolB translocation pr 82.1 49 0.0011 31.7 17.3 105 187-302 257-367 (419)
121 KOG1036 Mitotic spindle checkp 81.2 41 0.00088 30.2 12.1 89 188-293 36-125 (323)
122 KOG2048 WD40 repeat protein [G 80.9 64 0.0014 32.2 16.2 150 109-292 393-548 (691)
123 PF08268 FBA_3: F-box associat 80.6 23 0.00049 27.5 9.4 86 265-368 3-93 (129)
124 PF03089 RAG2: Recombination a 80.2 16 0.00034 32.5 8.8 40 93-133 81-127 (337)
125 PRK03629 tolB translocation pr 79.9 59 0.0013 31.3 17.2 101 188-300 224-327 (429)
126 PRK03629 tolB translocation pr 79.8 59 0.0013 31.2 22.5 102 188-301 268-372 (429)
127 KOG0293 WD40 repeat-containing 79.6 19 0.00041 33.7 9.4 154 165-374 323-482 (519)
128 KOG0289 mRNA splicing factor [ 79.1 59 0.0013 30.8 17.3 115 165-305 358-475 (506)
129 TIGR03866 PQQ_ABC_repeats PQQ- 78.9 46 0.00099 29.4 22.2 24 224-247 167-191 (300)
130 COG2706 3-carboxymuconate cycl 78.8 53 0.0012 30.1 26.8 154 188-365 168-332 (346)
131 PF02897 Peptidase_S9_N: Proly 78.6 62 0.0013 30.8 15.6 95 187-292 252-357 (414)
132 TIGR02800 propeller_TolB tol-p 77.4 66 0.0014 30.5 21.1 140 78-252 214-363 (417)
133 PLN02919 haloacid dehalogenase 75.9 1.3E+02 0.0028 32.9 20.7 67 223-295 813-891 (1057)
134 PLN03215 ascorbic acid mannose 75.2 74 0.0016 29.9 12.3 39 8-46 2-41 (373)
135 PRK04792 tolB translocation pr 74.9 84 0.0018 30.4 21.7 176 78-294 242-427 (448)
136 KOG0646 WD40 repeat protein [G 74.3 82 0.0018 30.0 14.6 26 264-295 285-310 (476)
137 PRK05137 tolB translocation pr 73.6 88 0.0019 30.1 21.5 185 78-300 226-420 (435)
138 KOG0266 WD40 repeat-containing 73.5 68 0.0015 31.2 12.4 65 165-248 257-323 (456)
139 TIGR03074 PQQ_membr_DH membran 73.2 1.2E+02 0.0027 31.6 14.8 76 222-298 258-352 (764)
140 KOG1332 Vesicle coat complex C 73.1 63 0.0014 28.2 17.3 116 226-366 176-297 (299)
141 PLN00181 protein SPA1-RELATED; 72.7 1.1E+02 0.0024 32.1 14.6 59 224-289 629-689 (793)
142 KOG4378 Nuclear protein COP1 [ 72.4 67 0.0014 31.0 11.1 62 165-245 220-282 (673)
143 KOG0647 mRNA export protein (c 71.9 56 0.0012 29.4 10.0 76 224-306 83-159 (347)
144 KOG0640 mRNA cleavage stimulat 71.5 34 0.00073 30.9 8.6 95 188-291 239-336 (430)
145 PF13570 PQQ_3: PQQ-like domai 70.5 8.5 0.00018 22.7 3.5 26 218-244 15-40 (40)
146 KOG0271 Notchless-like WD40 re 70.3 94 0.002 29.0 12.0 96 224-341 168-269 (480)
147 KOG0272 U4/U6 small nuclear ri 70.1 49 0.0011 31.1 9.6 111 165-303 314-427 (459)
148 PF13859 BNR_3: BNR repeat-lik 70.1 26 0.00056 32.0 8.0 67 236-305 150-219 (310)
149 cd00200 WD40 WD40 domain, foun 69.9 70 0.0015 27.3 19.3 21 225-245 147-167 (289)
150 KOG0291 WD40-repeat-containing 69.5 1.4E+02 0.003 30.6 18.0 109 218-336 438-549 (893)
151 KOG0772 Uncharacterized conser 69.3 1.2E+02 0.0025 29.6 14.1 100 218-338 320-430 (641)
152 PRK04922 tolB translocation pr 69.2 1.1E+02 0.0024 29.4 21.8 176 78-294 228-413 (433)
153 KOG4341 F-box protein containi 68.9 3.6 7.8E-05 38.6 2.2 39 9-47 71-109 (483)
154 KOG4649 PQQ (pyrrolo-quinoline 68.2 86 0.0019 27.7 10.9 89 188-295 34-126 (354)
155 PLN00033 photosystem II stabil 68.0 1.1E+02 0.0025 29.0 19.9 51 224-275 249-299 (398)
156 PTZ00421 coronin; Provisional 67.6 1.3E+02 0.0028 29.6 15.5 63 225-295 138-201 (493)
157 COG1520 FOG: WD40-like repeat 67.3 1.1E+02 0.0024 28.6 18.2 150 59-249 65-225 (370)
158 TIGR03074 PQQ_membr_DH membran 66.1 1.5E+02 0.0032 31.1 13.3 33 218-251 188-222 (764)
159 PLN02919 haloacid dehalogenase 65.9 2.1E+02 0.0045 31.3 23.1 70 225-300 752-841 (1057)
160 TIGR03032 conserved hypothetic 65.7 1.1E+02 0.0024 28.0 14.0 56 218-277 206-261 (335)
161 KOG0299 U3 snoRNP-associated p 65.1 1.3E+02 0.0028 28.7 15.5 84 218-305 331-425 (479)
162 PRK02889 tolB translocation pr 64.8 1.3E+02 0.0029 28.8 21.2 102 187-300 264-368 (427)
163 KOG0305 Anaphase promoting com 64.8 1.4E+02 0.0031 29.1 13.8 100 165-287 228-328 (484)
164 PF02239 Cytochrom_D1: Cytochr 64.6 1.3E+02 0.0027 28.4 11.8 105 165-294 48-160 (369)
165 KOG0291 WD40-repeat-containing 64.0 1.8E+02 0.0039 29.9 14.4 91 224-336 361-454 (893)
166 PF13013 F-box-like_2: F-box-l 63.8 6.1 0.00013 29.7 2.3 29 10-38 22-50 (109)
167 KOG0308 Conserved WD40 repeat- 63.7 1.6E+02 0.0035 29.6 12.1 104 165-289 129-242 (735)
168 KOG4283 Transcription-coupled 63.4 55 0.0012 29.3 8.2 78 224-307 55-147 (397)
169 KOG1897 Damage-specific DNA bi 63.2 2.1E+02 0.0046 30.4 18.4 160 165-355 786-949 (1096)
170 KOG0296 Angio-associated migra 63.0 1.3E+02 0.0028 27.9 14.2 64 224-294 159-222 (399)
171 KOG0294 WD40 repeat-containing 63.0 1.2E+02 0.0026 27.6 15.1 27 218-244 212-238 (362)
172 KOG0281 Beta-TrCP (transducin 62.6 38 0.00081 31.0 7.2 88 188-290 341-428 (499)
173 PF14583 Pectate_lyase22: Olig 62.1 1.4E+02 0.0031 28.1 11.5 106 236-355 169-275 (386)
174 PRK04043 tolB translocation pr 61.5 1.6E+02 0.0034 28.3 20.7 175 78-295 213-403 (419)
175 KOG0286 G-protein beta subunit 60.9 1.3E+02 0.0028 27.1 18.2 104 165-292 198-303 (343)
176 KOG0266 WD40 repeat-containing 60.8 1.7E+02 0.0036 28.5 13.8 94 188-295 226-321 (456)
177 COG3823 Glutamine cyclotransfe 60.5 75 0.0016 27.1 8.2 97 218-337 49-149 (262)
178 PF06433 Me-amine-dh_H: Methyl 59.9 53 0.0012 30.3 7.9 37 265-303 247-286 (342)
179 PF09372 PRANC: PRANC domain; 57.7 10 0.00023 27.8 2.6 25 8-32 70-94 (97)
180 PTZ00334 trans-sialidase; Prov 57.5 1.4E+02 0.0031 31.0 11.2 66 236-304 288-355 (780)
181 KOG0649 WD40 repeat protein [G 57.1 1.4E+02 0.0029 26.2 11.2 65 224-298 126-192 (325)
182 TIGR02658 TTQ_MADH_Hv methylam 55.3 1.8E+02 0.0039 27.2 22.1 75 61-139 11-100 (352)
183 KOG1332 Vesicle coat complex C 55.2 1.4E+02 0.0031 26.1 9.2 58 238-302 238-297 (299)
184 KOG0315 G-protein beta subunit 53.1 1.6E+02 0.0035 25.9 20.3 60 225-289 136-196 (311)
185 PF09826 Beta_propel: Beta pro 52.6 1.5E+02 0.0032 29.5 10.3 105 236-355 249-361 (521)
186 KOG0263 Transcription initiati 52.2 1E+02 0.0022 31.3 9.0 60 224-289 588-648 (707)
187 KOG0318 WD40 repeat stress pro 51.1 2.5E+02 0.0054 27.5 11.6 94 224-335 201-297 (603)
188 cd00200 WD40 WD40 domain, foun 51.0 1.5E+02 0.0033 25.1 16.1 22 225-246 231-252 (289)
189 PF02897 Peptidase_S9_N: Proly 50.9 2.2E+02 0.0049 26.9 14.9 139 77-250 251-411 (414)
190 KOG0278 Serine/threonine kinas 50.4 1.8E+02 0.0039 25.6 9.3 73 225-306 155-227 (334)
191 KOG3545 Olfactomedin and relat 50.4 1.8E+02 0.0038 25.6 14.0 147 196-371 55-216 (249)
192 KOG0282 mRNA splicing factor [ 49.8 75 0.0016 30.4 7.3 22 225-246 312-333 (503)
193 PF07433 DUF1513: Protein of u 49.8 2E+02 0.0044 26.1 18.7 80 62-147 16-107 (305)
194 KOG0274 Cdc4 and related F-box 47.7 3E+02 0.0065 27.5 12.4 73 221-301 377-450 (537)
195 PF03088 Str_synth: Strictosid 47.5 86 0.0019 22.6 5.9 18 235-252 37-54 (89)
196 KOG1036 Mitotic spindle checkp 47.0 2.2E+02 0.0048 25.8 13.3 49 188-244 76-125 (323)
197 KOG0300 WD40 repeat-containing 46.4 2.3E+02 0.005 25.8 9.9 45 323-380 404-450 (481)
198 KOG3545 Olfactomedin and relat 45.5 2.1E+02 0.0046 25.1 12.6 144 224-382 30-181 (249)
199 KOG1274 WD40 repeat protein [G 45.1 3.6E+02 0.0079 28.4 11.6 107 218-335 59-166 (933)
200 PF13088 BNR_2: BNR repeat-lik 44.7 1.5E+02 0.0033 26.1 8.6 111 188-305 135-255 (275)
201 KOG2502 Tub family proteins [G 44.7 13 0.00028 33.9 1.6 39 8-46 43-89 (355)
202 KOG0645 WD40 repeat protein [G 44.7 2.3E+02 0.005 25.3 14.7 118 166-304 27-148 (312)
203 PF06433 Me-amine-dh_H: Methyl 44.4 58 0.0013 30.1 5.6 76 163-247 247-324 (342)
204 COG3823 Glutamine cyclotransfe 44.4 2.1E+02 0.0045 24.6 9.0 160 165-370 55-221 (262)
205 KOG3669 Uncharacterized conser 43.4 3.5E+02 0.0075 27.0 13.3 173 189-387 210-393 (705)
206 PF09910 DUF2139: Uncharacteri 43.4 2.6E+02 0.0055 25.4 14.6 92 165-274 117-220 (339)
207 KOG2321 WD40 repeat protein [G 42.8 3.6E+02 0.0077 26.9 15.1 62 165-246 145-208 (703)
208 KOG0303 Actin-binding protein 42.8 1.9E+02 0.004 27.3 8.5 68 222-293 182-250 (472)
209 PF06462 Hyd_WA: Propeller; I 42.6 27 0.00058 19.7 2.1 27 106-133 6-32 (32)
210 PF14781 BBS2_N: Ciliary BBSom 42.4 89 0.0019 24.5 5.6 61 227-299 66-134 (136)
211 KOG0316 Conserved WD40 repeat- 41.6 2.4E+02 0.0052 24.7 12.8 93 221-335 67-161 (307)
212 KOG0647 mRNA export protein (c 40.5 2.7E+02 0.0059 25.3 8.9 100 225-353 40-146 (347)
213 PF15525 DUF4652: Domain of un 39.7 2.3E+02 0.0049 23.8 9.4 92 235-338 88-182 (200)
214 PF01011 PQQ: PQQ enzyme repea 39.2 58 0.0013 18.8 3.4 23 226-249 2-26 (38)
215 KOG0639 Transducin-like enhanc 38.7 74 0.0016 30.8 5.5 66 165-246 476-542 (705)
216 COG4946 Uncharacterized protei 38.4 3.8E+02 0.0083 26.0 19.1 71 223-301 369-440 (668)
217 KOG1523 Actin-related protein 38.2 3.2E+02 0.0069 25.0 9.8 101 186-297 31-137 (361)
218 KOG0279 G protein beta subunit 37.7 2.7E+02 0.006 24.9 8.4 104 224-355 161-265 (315)
219 KOG2445 Nuclear pore complex c 37.3 3.2E+02 0.007 24.9 9.9 80 225-304 126-221 (361)
220 KOG0639 Transducin-like enhanc 36.9 3.3E+02 0.0072 26.6 9.3 76 223-304 428-507 (705)
221 smart00564 PQQ beta-propeller 36.6 65 0.0014 17.5 3.2 23 222-245 4-26 (33)
222 KOG4649 PQQ (pyrrolo-quinoline 36.6 3.1E+02 0.0067 24.4 11.1 110 219-361 15-130 (354)
223 PF08950 DUF1861: Protein of u 35.8 3E+02 0.0065 24.7 8.3 56 219-274 31-94 (298)
224 KOG1517 Guanine nucleotide bin 35.6 2E+02 0.0043 31.0 8.2 120 226-366 1124-1256(1387)
225 PTZ00420 coronin; Provisional 35.2 4.8E+02 0.01 26.3 14.4 27 224-250 274-300 (568)
226 KOG0294 WD40 repeat-containing 35.2 1.9E+02 0.0042 26.3 7.2 47 196-246 28-74 (362)
227 PF08950 DUF1861: Protein of u 35.0 3.2E+02 0.0069 24.5 8.4 61 263-336 32-94 (298)
228 KOG0306 WD40-repeat-containing 34.8 5.4E+02 0.012 26.7 14.0 103 224-352 118-221 (888)
229 KOG2048 WD40 repeat protein [G 34.2 5.1E+02 0.011 26.3 16.6 39 78-117 47-88 (691)
230 PF08662 eIF2A: Eukaryotic tra 33.9 2.8E+02 0.0061 23.2 9.9 100 165-290 71-179 (194)
231 PLN00181 protein SPA1-RELATED; 33.8 5.8E+02 0.013 26.8 23.3 102 165-289 629-737 (793)
232 TIGR02608 delta_60_rpt delta-6 33.4 1.3E+02 0.0027 19.5 4.4 31 263-293 7-38 (55)
233 PRK02889 tolB translocation pr 32.9 4.5E+02 0.0097 25.2 20.8 93 188-293 309-404 (427)
234 KOG0316 Conserved WD40 repeat- 32.8 3.4E+02 0.0074 23.8 11.4 66 165-247 112-177 (307)
235 PF09910 DUF2139: Uncharacteri 32.8 3.8E+02 0.0083 24.4 13.8 126 223-370 7-153 (339)
236 KOG0318 WD40 repeat stress pro 31.6 4.8E+02 0.01 25.7 9.6 32 219-250 449-480 (603)
237 KOG1188 WD40 repeat protein [G 31.4 4.3E+02 0.0092 24.5 9.5 52 188-245 51-104 (376)
238 KOG0265 U5 snRNP-specific prot 31.3 4E+02 0.0087 24.2 11.4 24 224-247 101-124 (338)
239 TIGR02276 beta_rpt_yvtn 40-res 28.6 1.1E+02 0.0025 17.5 3.6 24 224-247 3-26 (42)
240 KOG0296 Angio-associated migra 28.0 4E+02 0.0086 24.9 8.0 70 224-298 75-144 (399)
241 KOG1538 Uncharacterized conser 27.8 1.5E+02 0.0033 29.9 5.8 58 159-235 18-75 (1081)
242 KOG0282 mRNA splicing factor [ 27.7 1.9E+02 0.004 27.9 6.2 68 224-298 226-294 (503)
243 PF12217 End_beta_propel: Cata 27.5 4.4E+02 0.0096 23.4 17.4 157 165-337 84-258 (367)
244 PF08309 LVIVD: LVIVD repeat; 27.2 1.5E+02 0.0032 17.9 4.8 29 321-353 4-33 (42)
245 KOG0308 Conserved WD40 repeat- 25.7 1.9E+02 0.0041 29.1 6.0 24 223-246 128-151 (735)
246 KOG0643 Translation initiation 25.6 4.9E+02 0.011 23.3 10.3 23 224-246 158-180 (327)
247 PF08662 eIF2A: Eukaryotic tra 24.4 4.2E+02 0.0091 22.1 9.3 70 225-303 72-142 (194)
248 PF11768 DUF3312: Protein of u 24.4 4.9E+02 0.011 25.9 8.5 97 182-294 231-331 (545)
249 TIGR03065 srtB_sig_QVPTGV sort 24.2 1.3E+02 0.0029 16.4 2.7 17 319-335 13-29 (32)
250 KOG4378 Nuclear protein COP1 [ 24.0 6.1E+02 0.013 24.9 8.8 26 222-247 218-243 (673)
251 COG4880 Secreted protein conta 23.6 6.7E+02 0.015 24.2 13.1 181 71-302 399-600 (603)
252 KOG0772 Uncharacterized conser 23.3 7.3E+02 0.016 24.5 13.4 76 223-303 374-454 (641)
253 KOG0640 mRNA cleavage stimulat 23.2 3.4E+02 0.0074 24.8 6.6 65 224-295 227-294 (430)
254 PF12217 End_beta_propel: Cata 22.1 5.4E+02 0.012 22.9 7.5 57 219-275 195-257 (367)
255 PF06079 Apyrase: Apyrase; In 21.7 5.3E+02 0.012 23.3 7.6 59 216-274 55-117 (291)
256 TIGR03118 PEPCTERM_chp_1 conse 21.2 6.5E+02 0.014 23.1 8.9 55 267-335 151-205 (336)
257 KOG0272 U4/U6 small nuclear ri 21.2 7.3E+02 0.016 23.7 12.4 98 165-287 356-457 (459)
258 KOG0306 WD40-repeat-containing 21.1 4.4E+02 0.0096 27.2 7.6 67 218-289 416-483 (888)
259 KOG3669 Uncharacterized conser 20.2 4.6E+02 0.01 26.2 7.3 56 80-136 210-272 (705)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=323.06 Aligned_cols=268 Identities=20% Similarity=0.317 Sum_probs=233.3
Q ss_pred CCCCEEEEEcccCC-CCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc----------ceEecCCcCc
Q 016239 60 SPRPWFFLFGLHNT-SSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR----------FGFSRILNTS 128 (392)
Q Consensus 60 ~~~~~l~~~gg~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~----------~~ynp~~~~~ 128 (392)
...+.++++||... ....+.+.+|||.++.|..+++|+.+|..+++++.+|.||++||. ++|||. +++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR-TNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC-CCc
Confidence 45678999999886 566788999999999999999999999999999999999999983 899999 799
Q ss_pred eeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCC
Q 016239 129 WHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPAD 208 (392)
Q Consensus 129 W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 208 (392)
|..+++|+.+|..++++++ +++||++||.+ ......++|+||+.+++|+.+++|+.+
T Consensus 361 W~~~a~M~~~R~~~~v~~l-----------------~g~iYavGG~d------g~~~l~svE~YDp~~~~W~~va~m~~~ 417 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL-----------------DGKLYAVGGFD------GEKSLNSVECYDPVTNKWTPVAPMLTR 417 (571)
T ss_pred eeccCCccCccccceeEEE-----------------CCEEEEEeccc------cccccccEEEecCCCCcccccCCCCcc
Confidence 9999999999999999999 99999999985 223456899999999999999999996
Q ss_pred CCCCCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCC
Q 016239 209 FRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGP 282 (392)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~ 282 (392)
|.+ +++++++|+||++||.+ +++++|||.+++|+.+++|+..+.. +.+++.+++||++||.+. ...
T Consensus 418 -r~~-----~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~~~iYvvGG~~~-~~~ 489 (571)
T KOG4441|consen 418 -RSG-----HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLNGKIYVVGGFDG-TSA 489 (571)
T ss_pred -eee-----eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEEEECCEEEEECCccC-CCc
Confidence 877 89999999999999965 5899999999999999999985554 447899999999999876 222
Q ss_pred ceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCccceeee
Q 016239 283 SFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDKCRCSWR 361 (392)
Q Consensus 283 ~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~ 361 (392)
...|.+||+.+++|+.++.|+.. |.+.++++.+++||++|| .++......++. ||++|+ |+
T Consensus 490 ~~~VE~ydp~~~~W~~v~~m~~~-------------rs~~g~~~~~~~ly~vGG-~~~~~~l~~ve~ydp~~d~----W~ 551 (571)
T KOG4441|consen 490 LSSVERYDPETNQWTMVAPMTSP-------------RSAVGVVVLGGKLYAVGG-FDGNNNLNTVECYDPETDT----WT 551 (571)
T ss_pred cceEEEEcCCCCceeEcccCccc-------------cccccEEEECCEEEEEec-ccCccccceeEEcCCCCCc----ee
Confidence 34578889999999999999888 469999999999999999 666666777777 999999 99
Q ss_pred ecCCCCCcccccceEEE
Q 016239 362 RLPQLPSPVNEFHKVIS 378 (392)
Q Consensus 362 ~~~~~p~~~~~~~~~~~ 378 (392)
..++ |......+++++
T Consensus 552 ~~~~-~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 552 EVTE-PESGRGGAGVAV 567 (571)
T ss_pred eCCC-ccccccCcceEE
Confidence 9999 655555544444
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3e-37 Score=301.04 Aligned_cols=237 Identities=10% Similarity=0.149 Sum_probs=202.4
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc----------ceEecCCcCceeecCCCCcCccCceEEEE
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR----------FGFSRILNTSWHLTSPLRFSRINPLVGVF 147 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~----------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~ 147 (392)
..+++||+.+++|..+++||.+|..+++++.+|.||++||. ++|||. +++|..+++|+.+|..++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~-~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE-NKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC-CCeEeeCCCCcchhhceeEEEE
Confidence 46789999999999999999999999999999999999983 789999 7999999999999999999999
Q ss_pred EcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEE
Q 016239 148 YDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRF 227 (392)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~l 227 (392)
+++||++||.+. .....++++||+.+++|+.+++||.+ |.. +++++++|+|
T Consensus 351 -----------------~g~IYviGG~~~------~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~-----~~~~~~~g~I 401 (557)
T PHA02713 351 -----------------DDTIYAIGGQNG------TNVERTIECYTMGDDKWKMLPDMPIA-LSS-----YGMCVLDQYI 401 (557)
T ss_pred -----------------CCEEEEECCcCC------CCCCceEEEEECCCCeEEECCCCCcc-ccc-----ccEEEECCEE
Confidence 999999999731 12345899999999999999999998 665 7888999999
Q ss_pred EEEeecc-----------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCce
Q 016239 228 YVFGIYS-----------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSF 284 (392)
Q Consensus 228 y~~gg~~-----------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~ 284 (392)
|++||.. +.+++|||.+++|+.+++++..+. .+.+++++|+||++||.........
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~~~~IYv~GG~~~~~~~~~ 480 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVSHKDDIYVVCDIKDEKNVKT 480 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcEEEECCEEEEEeCCCCCCccce
Confidence 9999964 368999999999999998877544 4567899999999998653322223
Q ss_pred eEEEeecCc-cceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCccceeeee
Q 016239 285 NLWKVDELS-MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDKCRCSWRR 362 (392)
Q Consensus 285 ~v~~~d~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~~ 362 (392)
.+.+||+.+ ++|+.+++||..+ ..+++++++|+||++||.. +. ..+|+ |+.+++ |+.
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r-------------~~~~~~~~~~~iyv~Gg~~-~~---~~~e~yd~~~~~----W~~ 539 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRL-------------SALHTILHDNTIMMLHCYE-SY---MLQDTFNVYTYE----WNH 539 (557)
T ss_pred eEEEecCCCCCCeeEccccCccc-------------ccceeEEECCEEEEEeeec-ce---eehhhcCccccc----ccc
Confidence 578899999 8999999999984 5899999999999999943 21 24676 999999 999
Q ss_pred cCCC
Q 016239 363 LPQL 366 (392)
Q Consensus 363 ~~~~ 366 (392)
+++-
T Consensus 540 ~~~~ 543 (557)
T PHA02713 540 ICHQ 543 (557)
T ss_pred hhhh
Confidence 8753
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3e-35 Score=285.74 Aligned_cols=245 Identities=20% Similarity=0.322 Sum_probs=210.2
Q ss_pred ChhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccC-CCCCCCceeeeeCCCCceeeCCCCCCCCCcce
Q 016239 26 PIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN-TSSRNNQSFAFDPASNSWFHLPPAQEPRAGSC 104 (392)
Q Consensus 26 P~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 104 (392)
+...+..+++..+.|..+...|.-.. +...+..++.+|+.||.+ +...++.++.|||.+++|..+++|+.+|..++
T Consensus 299 ~~~~ve~yd~~~~~w~~~a~m~~~r~---~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 299 SLRSVECYDPKTNEWSSLAPMPSPRC---RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG 375 (571)
T ss_pred ccceeEEecCCcCcEeecCCCCcccc---cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce
Confidence 45677788888999999998884222 345566788999999999 67788999999999999999999999999999
Q ss_pred EEeecceEEeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEecee
Q 016239 105 FIGANGFFFTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVR 175 (392)
Q Consensus 105 ~~~~~g~i~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~ 175 (392)
+++++|.||++||. ++|||. +++|..+++|+.+|+.++++++ +++||++||.+
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~-~~~W~~va~m~~~r~~~gv~~~-----------------~g~iYi~GG~~ 437 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPV-TNKWTPVAPMLTRRSGHGVAVL-----------------GGKLYIIGGGD 437 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCC-CCcccccCCCCcceeeeEEEEE-----------------CCEEEEEcCcC
Confidence 99999999999983 899999 8999999999999999999999 99999999974
Q ss_pred ecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeeccc-----EEEEEECCCCceeec
Q 016239 176 FIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSF-----SVSSFDLKKHVWSEV 250 (392)
Q Consensus 176 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~-----~i~~yd~~~~~W~~i 250 (392)
... ....++++|||.+++|+.+++|+.+ |.+ +++++.+++||++||.++ ++++||+.+++|+.+
T Consensus 438 ~~~-----~~l~sve~YDP~t~~W~~~~~M~~~-R~~-----~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 438 GSS-----NCLNSVECYDPETNTWTLIAPMNTR-RSG-----FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred CCc-----cccceEEEEcCCCCceeecCCcccc-ccc-----ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 211 1457999999999999999999998 776 889999999999999874 689999999999999
Q ss_pred ccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHH
Q 016239 251 QTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD 305 (392)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~ 305 (392)
.++.. ++....+++.+++||++||.+.... ...|-.||+.+++|+.... +..
T Consensus 507 ~~m~~-~rs~~g~~~~~~~ly~vGG~~~~~~-l~~ve~ydp~~d~W~~~~~-~~~ 558 (571)
T KOG4441|consen 507 APMTS-PRSAVGVVVLGGKLYAVGGFDGNNN-LNTVECYDPETDTWTEVTE-PES 558 (571)
T ss_pred ccCcc-ccccccEEEECCEEEEEecccCccc-cceeEEcCCCCCceeeCCC-ccc
Confidence 77776 4456667999999999999655432 3445566999999999999 544
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-34 Score=278.81 Aligned_cols=241 Identities=12% Similarity=0.135 Sum_probs=196.9
Q ss_pred HHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccC-CCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee
Q 016239 30 LIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN-TSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA 108 (392)
Q Consensus 30 l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 108 (392)
+.++++..++|..+...|.-.. .+.++..++.+|++||.. .....+.+++|||.+++|..+++|+.+|..++++++
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~---~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHII---NYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred EEEEeCCCCeEEECCCCCcccc---ceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 4456777788998887765322 223455688999999975 334567899999999999999999999999999999
Q ss_pred cceEEeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCc
Q 016239 109 NGFFFTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGG 179 (392)
Q Consensus 109 ~g~i~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~ 179 (392)
+|.||++||. ++|||. +++|..+++||.+|..++++++ +++||++||.+....
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~-~~~W~~~~~mp~~r~~~~~~~~-----------------~g~IYviGG~~~~~~ 412 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMG-DDKWKMLPDMPIALSSYGMCVL-----------------DQYIYIIGGRTEHID 412 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECC-CCeEEECCCCCcccccccEEEE-----------------CCEEEEEeCCCcccc
Confidence 9999999983 799999 7999999999999999999999 999999999742110
Q ss_pred c------------cccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEE
Q 016239 180 L------------VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFD 241 (392)
Q Consensus 180 ~------------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd 241 (392)
. .+.....++++|||.+++|+.+++|+.+ |.. +++++++|+||++||.. ..+++||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~-----~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIR-----PGVVSHKDDIYVVCDIKDEKNVKTCIFRYN 486 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCCCcc-ccc-----CcEEEECCEEEEEeCCCCCCccceeEEEec
Confidence 0 0011245799999999999999999987 766 78999999999999964 3578999
Q ss_pred CCC-CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239 242 LKK-HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM 302 (392)
Q Consensus 242 ~~~-~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~ 302 (392)
|.+ ++|+.+++++..+ ....+++++|+||++||.++. ..+.+||+.+++|+.+.+-
T Consensus 487 p~~~~~W~~~~~m~~~r-~~~~~~~~~~~iyv~Gg~~~~----~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 487 TNTYNGWELITTTESRL-SALHTILHDNTIMMLHCYESY----MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CCCCCCeeEccccCccc-ccceeEEECCEEEEEeeecce----eehhhcCcccccccchhhh
Confidence 999 8999999888744 456678999999999997652 3566789999999987663
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3e-32 Score=252.73 Aligned_cols=267 Identities=18% Similarity=0.269 Sum_probs=192.9
Q ss_pred hhhhhhhcCc--chhhHhhhccCCCCCCEEEEEcccCC--CCCCCceeeeeCCCCceeeCCCCC-CCCC---cceEEeec
Q 016239 38 KSWRSIISAP--SFSALIAHNTNASPRPWFFLFGLHNT--SSRNNQSFAFDPASNSWFHLPPAQ-EPRA---GSCFIGAN 109 (392)
Q Consensus 38 k~W~~l~~~~--~f~~~~~~~~~~~~~~~l~~~gg~~~--~~~~~~~~~yd~~~~~W~~~~~~~-~~r~---~~~~~~~~ 109 (392)
..|..+.... ....+.. +.++..++.||++||... ....++++.||+.+++|..++++. .|+. .+++++.+
T Consensus 7 ~~W~~~~~~~~~~P~pR~~-h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~ 85 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCS-HGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG 85 (341)
T ss_pred CeEEEecCCCCCCCCCCCc-ceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC
Confidence 4588776632 1123332 344556789999999743 223468999999999999987664 3443 56788889
Q ss_pred ceEEeecCc---------ceEecCCcCceeecCCC-----CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEecee
Q 016239 110 GFFFTTTPR---------FGFSRILNTSWHLTSPL-----RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVR 175 (392)
Q Consensus 110 g~i~v~gg~---------~~ynp~~~~~W~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~ 175 (392)
+.||++||. ++||+. +++|+.++++ |.+|..|++++. +++|||+||..
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~p~~R~~~~~~~~-----------------~~~iyv~GG~~ 147 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTV-KNEWTFLTKLDEEGGPEARTFHSMASD-----------------ENHVYVFGGVS 147 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECC-CCEEEEeccCCCCCCCCCceeeEEEEE-----------------CCEEEEECCcc
Confidence 999999983 799999 7999999887 788999999988 99999999975
Q ss_pred ecCcccccccceEEEEEeCCCCCeecCCCCCC--CCCCCCCccceeeEEECCEEEEEeecc-------------cEEEEE
Q 016239 176 FIGGLVDIEDRLAVEIYDPHSDSWELCPPLPA--DFRSGYSSQYLSSALFRGRFYVFGIYS-------------FSVSSF 240 (392)
Q Consensus 176 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~g~ly~~gg~~-------------~~i~~y 240 (392)
..+.........++++||+.+++|+.++.+.. ..|.+ ++++.++++||++||.. +.+++|
T Consensus 148 ~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~-----~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~y 222 (341)
T PLN02153 148 KGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG-----AGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFF 222 (341)
T ss_pred CCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc-----ceEEEECCeEEEEeccccccccCCccceecCceEEE
Confidence 32211111123579999999999999986541 22555 78888999999998742 479999
Q ss_pred ECCCCceeecccC--CCCcccceeEEeeCCeEEEEEeecCC--------CCCceeEEEeecCccceEecc-----cCCHH
Q 016239 241 DLKKHVWSEVQTL--RPPGVMFSFLIASPNMLVLAGMCNAP--------RGPSFNLWKVDELSMEFSEIA-----IMPHD 305 (392)
Q Consensus 241 d~~~~~W~~i~~~--~~~~~~~~~~~~~~g~l~v~gg~~~~--------~~~~~~v~~~d~~~~~W~~~~-----~~p~~ 305 (392)
|+.+++|+.+... .|..+..+.+++++++|||+||.... .....++|+||+.+++|+.+. .+|..
T Consensus 223 d~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~ 302 (341)
T PLN02153 223 DPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRG 302 (341)
T ss_pred EcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCc
Confidence 9999999998653 23344556678889999999995321 112458999999999999886 34444
Q ss_pred HHHhhcCCcccCccceeEEEEeC-CEEEEEeccccC
Q 016239 306 FLYSLVDTEEDDKFASLKCVGLG-NLIYVFNEEYHK 340 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~gg~~~~ 340 (392)
+. ...++.+.+ ++|||+||....
T Consensus 303 ~~------------~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 303 WT------------AYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred cc------------cccccccCCcceEEEEcCcCCC
Confidence 21 122333444 589999996443
No 6
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.4e-32 Score=251.86 Aligned_cols=250 Identities=17% Similarity=0.172 Sum_probs=185.1
Q ss_pred CCCCCCCCCcceEEeecceEEeecCc-----ceEec--CCcCceeecCCCC-cCccCceEEEEEcCCCCcccccCCcccC
Q 016239 93 LPPAQEPRAGSCFIGANGFFFTTTPR-----FGFSR--ILNTSWHLTSPLR-FSRINPLVGVFYDHDRGHCDLASGFACN 164 (392)
Q Consensus 93 ~~~~~~~r~~~~~~~~~g~i~v~gg~-----~~ynp--~~~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (392)
+++||.++...++++.++.|||+||. ++||+ . +++|..+++|| .+|..++++++
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~-~~~W~~l~~~p~~~R~~~~~~~~----------------- 62 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKP-SKGWQKIADFPGGPRNQAVAAAI----------------- 62 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccCCeeEEEECCCC-CCCceECCCCCCCCcccceEEEE-----------------
Confidence 46788898888887889999999984 68885 4 67999999998 58999999999
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCC-CCCCCCCCCCccceeeE-EECCEEEEEeecc--------
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPP-LPADFRSGYSSQYLSSA-LFRGRFYVFGIYS-------- 234 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~-------- 234 (392)
+++||++||..............++++||+.+++|+.++. +|.. +.+ ++++ .++++||++||..
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~~~-----~~~~~~~~g~IYviGG~~~~~~~~~~ 136 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-LLG-----ASGFSLHNGQAYFTGGVNKNIFDGYF 136 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-ccc-----eeEEEEeCCEEEEEcCcChHHHHHHH
Confidence 9999999997421100001134589999999999999973 4444 443 4555 6899999999964
Q ss_pred -------------------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCc
Q 016239 235 -------------------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPS 283 (392)
Q Consensus 235 -------------------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~ 283 (392)
+.+++||+.+++|+.+++++...+..++++.++++||++||.......+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 216 (346)
T TIGR03547 137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRT 216 (346)
T ss_pred hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccc
Confidence 4799999999999999888764555677788999999999975433333
Q ss_pred eeEEEe--ecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC----------------CCeE
Q 016239 284 FNLWKV--DELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK----------------YPAC 345 (392)
Q Consensus 284 ~~v~~~--d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~----------------~~~~ 345 (392)
.++|.| |+++++|++++.||..+.. ...++..+++++.+++|||+||..... ....
T Consensus 217 ~~~~~y~~~~~~~~W~~~~~m~~~r~~------~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (346)
T TIGR03547 217 AEVKQYLFTGGKLEWNKLPPLPPPKSS------SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAW 290 (346)
T ss_pred hheEEEEecCCCceeeecCCCCCCCCC------ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCcee
Confidence 445544 5677899999999865310 001123556778999999999954211 1123
Q ss_pred EEEe-ecCCCccceeeeecCCCCCcccccceE
Q 016239 346 VCEI-GTESDKCRCSWRRLPQLPSPVNEFHKV 376 (392)
Q Consensus 346 ~~~~-d~~~~~~~~~W~~~~~~p~~~~~~~~~ 376 (392)
.+|+ |+++++ |+.+++||.++..++++
T Consensus 291 ~~e~yd~~~~~----W~~~~~lp~~~~~~~~~ 318 (346)
T TIGR03547 291 SSEVYALDNGK----WSKVGKLPQGLAYGVSV 318 (346)
T ss_pred EeeEEEecCCc----ccccCCCCCCceeeEEE
Confidence 4566 999999 99999999987655443
No 7
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=7.5e-32 Score=265.13 Aligned_cols=262 Identities=16% Similarity=0.185 Sum_probs=205.0
Q ss_pred CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc----------ceEecCCcCceee
Q 016239 62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR----------FGFSRILNTSWHL 131 (392)
Q Consensus 62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~----------~~ynp~~~~~W~~ 131 (392)
...+++.+|.. ........|++..++|..+++++. +..+++++.++.||++||. ++||+. +++|..
T Consensus 250 ~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~ 325 (534)
T PHA03098 250 GSIIYIHITMS--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK-TKSWNK 325 (534)
T ss_pred CcceEeecccc--hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCC-CCeeeE
Confidence 34455544433 123445678988999988876653 3345788889999999983 799999 799999
Q ss_pred cCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCC
Q 016239 132 TSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRS 211 (392)
Q Consensus 132 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~ 211 (392)
+++|+.+|..++++++ +++||++||.+ ......++++||+.+++|+.++++|.+ |.
T Consensus 326 ~~~~~~~R~~~~~~~~-----------------~~~lyv~GG~~------~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~ 381 (534)
T PHA03098 326 VPELIYPRKNPGVTVF-----------------NNRIYVIGGIY------NSISLNTVESWKPGESKWREEPPLIFP-RY 381 (534)
T ss_pred CCCCCcccccceEEEE-----------------CCEEEEEeCCC------CCEecceEEEEcCCCCceeeCCCcCcC-Cc
Confidence 9999999999999999 99999999974 123456899999999999999999987 77
Q ss_pred CCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCC--Cc
Q 016239 212 GYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRG--PS 283 (392)
Q Consensus 212 ~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~--~~ 283 (392)
. ++++.++++||++||.. +.+++||+.+++|+.++++|..+. .+.++..+++||++||...... ..
T Consensus 382 ~-----~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~ 455 (534)
T PHA03098 382 N-----PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVY 455 (534)
T ss_pred c-----ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCccc
Confidence 6 78889999999999953 479999999999999988776544 4556888999999998654321 12
Q ss_pred eeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239 284 FNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL 363 (392)
Q Consensus 284 ~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~ 363 (392)
..+++||+.+++|+.++.+|.. |..++++..+++|||+||.........+..||+++++ |+.+
T Consensus 456 ~~v~~yd~~~~~W~~~~~~~~~-------------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~ 518 (534)
T PHA03098 456 NIVESYNPVTNKWTELSSLNFP-------------RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT----WTLF 518 (534)
T ss_pred ceEEEecCCCCceeeCCCCCcc-------------cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE----EEec
Confidence 4589999999999999988865 3467778889999999996543322233334999999 9999
Q ss_pred CCCCCcccccc
Q 016239 364 PQLPSPVNEFH 374 (392)
Q Consensus 364 ~~~p~~~~~~~ 374 (392)
+.+|.......
T Consensus 519 ~~~p~~~~~~~ 529 (534)
T PHA03098 519 CKFPKVIGSLE 529 (534)
T ss_pred CCCccccccee
Confidence 99887555443
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8.4e-32 Score=249.68 Aligned_cols=245 Identities=16% Similarity=0.219 Sum_probs=186.5
Q ss_pred CCCCceeeCCC----CCCCCCcceEEeecceEEeecCc-----------ceEecCCcCceeecCCCC-cCcc---CceEE
Q 016239 85 PASNSWFHLPP----AQEPRAGSCFIGANGFFFTTTPR-----------FGFSRILNTSWHLTSPLR-FSRI---NPLVG 145 (392)
Q Consensus 85 ~~~~~W~~~~~----~~~~r~~~~~~~~~g~i~v~gg~-----------~~ynp~~~~~W~~~~~~~-~~r~---~~~~~ 145 (392)
+...+|..+.. +|.||..|++++.++.||++||. ++||+. +++|..++++. .+|. .++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN-THTWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC-CCEEEEcCccCCCCCCccCceEEE
Confidence 45677998865 78899999999999999999883 789999 79999988764 3443 57788
Q ss_pred EEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC-----CCCCCCCCCccceee
Q 016239 146 VFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-----PADFRSGYSSQYLSS 220 (392)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~~~~~~~~~~~~~ 220 (392)
++ +++||++||... .....++++||+.+++|+.++++ |.+ |.. |++
T Consensus 83 ~~-----------------~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~~-----~~~ 133 (341)
T PLN02153 83 AV-----------------GTKLYIFGGRDE------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-RTF-----HSM 133 (341)
T ss_pred EE-----------------CCEEEEECCCCC------CCccCcEEEEECCCCEEEEeccCCCCCCCCC-cee-----eEE
Confidence 88 999999999742 12345899999999999999876 544 554 888
Q ss_pred EEECCEEEEEeecc-----------cEEEEEECCCCceeecccCC--CCcccceeEEeeCCeEEEEEeecCC-------C
Q 016239 221 ALFRGRFYVFGIYS-----------FSVSSFDLKKHVWSEVQTLR--PPGVMFSFLIASPNMLVLAGMCNAP-------R 280 (392)
Q Consensus 221 ~~~~g~ly~~gg~~-----------~~i~~yd~~~~~W~~i~~~~--~~~~~~~~~~~~~g~l~v~gg~~~~-------~ 280 (392)
+..+++||++||.. .++++||+++++|+.++.+. +..+..+.+++++++||++||.... .
T Consensus 134 ~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~ 213 (341)
T PLN02153 134 ASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSD 213 (341)
T ss_pred EEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccc
Confidence 99999999999964 26899999999999987653 2345555678899999999875321 1
Q ss_pred CCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC---------CCCeEEEE
Q 016239 281 GPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK---------KYPACVCE 348 (392)
Q Consensus 281 ~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~---------~~~~~~~~ 348 (392)
....++++||+.+++|+++.. +|.. |..+++++++++|||+||.... .....++.
T Consensus 214 ~~~~~v~~yd~~~~~W~~~~~~g~~P~~-------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~ 280 (341)
T PLN02153 214 YESNAVQFFDPASGKWTEVETTGAKPSA-------------RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYA 280 (341)
T ss_pred eecCceEEEEcCCCcEEeccccCCCCCC-------------cceeeeEEECCEEEEECcccCCccccccccccccccEEE
Confidence 113578899999999999875 3444 5588999999999999996321 11124456
Q ss_pred eecCCCccceeeeecC-----CCCCcccccceE
Q 016239 349 IGTESDKCRCSWRRLP-----QLPSPVNEFHKV 376 (392)
Q Consensus 349 ~d~~~~~~~~~W~~~~-----~~p~~~~~~~~~ 376 (392)
+|+++++ |+.++ ++|..+..++++
T Consensus 281 ~d~~~~~----W~~~~~~~~~~~pr~~~~~~~~ 309 (341)
T PLN02153 281 LDTETLV----WEKLGECGEPAMPRGWTAYTTA 309 (341)
T ss_pred EEcCccE----EEeccCCCCCCCCCcccccccc
Confidence 6999999 99986 455544444433
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.5e-31 Score=244.84 Aligned_cols=240 Identities=15% Similarity=0.124 Sum_probs=188.2
Q ss_pred CCCCCEEEEEcccCCCC----------CCCceeeee-CCC-CceeeCCCCCCCCCcceEEeecceEEeecCc--------
Q 016239 59 ASPRPWFFLFGLHNTSS----------RNNQSFAFD-PAS-NSWFHLPPAQEPRAGSCFIGANGFFFTTTPR-------- 118 (392)
Q Consensus 59 ~~~~~~l~~~gg~~~~~----------~~~~~~~yd-~~~-~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-------- 118 (392)
...++.||++||.+... ..++++.|+ +.. .+|..+++||.+|..+++++.++.||++||.
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~ 89 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSS 89 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCcee
Confidence 44678899999976432 224677775 332 2699999999999888888889999999983
Q ss_pred -ceEecCCcCce----eecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEe
Q 016239 119 -FGFSRILNTSW----HLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYD 193 (392)
Q Consensus 119 -~~ynp~~~~~W----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd 193 (392)
++||+. +++| +.++++|.+|..++++++ +++||++||.. +.....++++||
T Consensus 90 v~~~d~~-~~~w~~~~~~~~~lp~~~~~~~~~~~-----------------~~~iYv~GG~~------~~~~~~~v~~yd 145 (323)
T TIGR03548 90 VYRITLD-ESKEELICETIGNLPFTFENGSACYK-----------------DGTLYVGGGNR------NGKPSNKSYLFN 145 (323)
T ss_pred EEEEEEc-CCceeeeeeEcCCCCcCccCceEEEE-----------------CCEEEEEeCcC------CCccCceEEEEc
Confidence 789998 6777 788999999999999999 99999999963 223356899999
Q ss_pred CCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc----cEEEEEECCCCceeecccCCC-----CcccceeEE
Q 016239 194 PHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS----FSVSSFDLKKHVWSEVQTLRP-----PGVMFSFLI 264 (392)
Q Consensus 194 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~i~~yd~~~~~W~~i~~~~~-----~~~~~~~~~ 264 (392)
+.+++|+.++++|...|.. +.++.++++||++||.. .++++||+++++|+.++.++. .....++++
T Consensus 146 ~~~~~W~~~~~~p~~~r~~-----~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~ 220 (323)
T TIGR03548 146 LETQEWFELPDFPGEPRVQ-----PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK 220 (323)
T ss_pred CCCCCeeECCCCCCCCCCc-----ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE
Confidence 9999999999887533665 77788999999999975 357899999999999987532 222344455
Q ss_pred eeCCeEEEEEeecCCC-------------------------------CCceeEEEeecCccceEecccCCHHHHHhhcCC
Q 016239 265 ASPNMLVLAGMCNAPR-------------------------------GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDT 313 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~-------------------------------~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~ 313 (392)
..+++||++||..... .....+++||+.+++|+.++.+|..
T Consensus 221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-------- 292 (323)
T TIGR03548 221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF-------- 292 (323)
T ss_pred ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc--------
Confidence 6689999999865321 0024688999999999999988743
Q ss_pred cccCccceeEEEEeCCEEEEEecccc
Q 016239 314 EEDDKFASLKCVGLGNLIYVFNEEYH 339 (392)
Q Consensus 314 ~~~~~~~~~~~~~~~~~i~v~gg~~~ 339 (392)
.|..++++.++++||++||+..
T Consensus 293 ----~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 293 ----ARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred ----ccCchheEEECCEEEEEecccc
Confidence 1457889999999999999643
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.2e-31 Score=244.72 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=182.8
Q ss_pred CCCCCCEEEEEcccCCCCCCCceeeeeC--CCCceeeCCCCC-CCCCcceEEeecceEEeecCc---------------c
Q 016239 58 NASPRPWFFLFGLHNTSSRNNQSFAFDP--ASNSWFHLPPAQ-EPRAGSCFIGANGFFFTTTPR---------------F 119 (392)
Q Consensus 58 ~~~~~~~l~~~gg~~~~~~~~~~~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~g~i~v~gg~---------------~ 119 (392)
++..++.||++||... ..++.||+ .+++|..+++|| .+|..+++++.++.||++||. +
T Consensus 13 ~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~ 88 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVY 88 (346)
T ss_pred EEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEE
Confidence 4456889999999643 56888985 678999999998 589989999999999999982 6
Q ss_pred eEecCCcCceeecC-CCCcCccCceEE-EEEcCCCCcccccCCcccCCCeEEEEeceeecCc---c------c-------
Q 016239 120 GFSRILNTSWHLTS-PLRFSRINPLVG-VFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGG---L------V------- 181 (392)
Q Consensus 120 ~ynp~~~~~W~~~~-~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~---~------~------- 181 (392)
+|||. +++|+.++ +++..|..++++ ++ +++||++||.+.... . .
T Consensus 89 ~Yd~~-~~~W~~~~~~~p~~~~~~~~~~~~-----------------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T TIGR03547 89 RYDPK-KNSWQKLDTRSPVGLLGASGFSLH-----------------NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD 150 (346)
T ss_pred EEECC-CCEEecCCCCCCCcccceeEEEEe-----------------CCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence 89999 79999987 456666666665 57 999999999742100 0 0
Q ss_pred ------------ccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEE--
Q 016239 182 ------------DIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFD-- 241 (392)
Q Consensus 182 ------------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd-- 241 (392)
......++++||+.+++|+.+++||...|.. ++++.++++||++||.. ..++.||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~ 225 (346)
T TIGR03547 151 KLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG-----SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFT 225 (346)
T ss_pred hhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC-----ceEEEECCEEEEEeeeeCCCccchheEEEEec
Confidence 0001257999999999999999998633655 78888999999999964 2355554
Q ss_pred CCCCceeecccCCCCcc------cceeEEeeCCeEEEEEeecCCCC----------------CceeEEEeecCccceEec
Q 016239 242 LKKHVWSEVQTLRPPGV------MFSFLIASPNMLVLAGMCNAPRG----------------PSFNLWKVDELSMEFSEI 299 (392)
Q Consensus 242 ~~~~~W~~i~~~~~~~~------~~~~~~~~~g~l~v~gg~~~~~~----------------~~~~v~~~d~~~~~W~~~ 299 (392)
+++++|+.+++++..+. ..+.+++++++||++||...... ....+.+||+++++|+.+
T Consensus 226 ~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 226 GGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred CCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 57789999988865331 23346788999999998642110 012455679999999999
Q ss_pred ccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecccc
Q 016239 300 AIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYH 339 (392)
Q Consensus 300 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~ 339 (392)
..||..+ ..+++++.+++|||+||...
T Consensus 306 ~~lp~~~-------------~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 306 GKLPQGL-------------AYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred CCCCCCc-------------eeeEEEEcCCEEEEEeccCC
Confidence 9999874 46778889999999999654
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.2e-30 Score=248.84 Aligned_cols=259 Identities=16% Similarity=0.201 Sum_probs=195.5
Q ss_pred CCCEEEEEcccCCCCCCCceeee--eCCC----CceeeCCC---CCCCCCcceEEeecceEEeecCc-----------ce
Q 016239 61 PRPWFFLFGLHNTSSRNNQSFAF--DPAS----NSWFHLPP---AQEPRAGSCFIGANGFFFTTTPR-----------FG 120 (392)
Q Consensus 61 ~~~~l~~~gg~~~~~~~~~~~~y--d~~~----~~W~~~~~---~~~~r~~~~~~~~~g~i~v~gg~-----------~~ 120 (392)
.++.|+.|.|+... .+..+-.| ++.+ ++|..+.+ +|.||..|+++..++.||++||. ++
T Consensus 119 ~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~ 197 (470)
T PLN02193 119 QGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYV 197 (470)
T ss_pred cCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEE
Confidence 46667777776543 23444444 7655 79998875 57899999999999999999982 79
Q ss_pred EecCCcCceeecCCC---Cc-CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCC
Q 016239 121 FSRILNTSWHLTSPL---RF-SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHS 196 (392)
Q Consensus 121 ynp~~~~~W~~~~~~---~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~ 196 (392)
||+. +++|..++++ |. .|..++++++ +++||++||.+. ....+++++||+.+
T Consensus 198 yD~~-~~~W~~~~~~g~~P~~~~~~~~~v~~-----------------~~~lYvfGG~~~------~~~~ndv~~yD~~t 253 (470)
T PLN02193 198 FDLE-TRTWSISPATGDVPHLSCLGVRMVSI-----------------GSTLYVFGGRDA------SRQYNGFYSFDTTT 253 (470)
T ss_pred EECC-CCEEEeCCCCCCCCCCcccceEEEEE-----------------CCEEEEECCCCC------CCCCccEEEEECCC
Confidence 9999 7999987653 33 2457778888 999999999742 12356899999999
Q ss_pred CCeecCCCC---CCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceeecccCC--CCcccceeEEee
Q 016239 197 DSWELCPPL---PADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSEVQTLR--PPGVMFSFLIAS 266 (392)
Q Consensus 197 ~~W~~~~~~---~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~i~~~~--~~~~~~~~~~~~ 266 (392)
++|+.++++ |.+ |.. |+++.++++||++||.. ..+++||+.+++|+.++.+. +..+..+.++++
T Consensus 254 ~~W~~l~~~~~~P~~-R~~-----h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~ 327 (470)
T PLN02193 254 NEWKLLTPVEEGPTP-RSF-----HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV 327 (470)
T ss_pred CEEEEcCcCCCCCCC-ccc-----eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE
Confidence 999999877 555 665 88889999999999975 47899999999999986532 234455667888
Q ss_pred CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC-----
Q 016239 267 PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK----- 341 (392)
Q Consensus 267 ~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~----- 341 (392)
+++||++||.... ...++|+||+.+++|+++..++.. +.+|..++++.++++|||+||.....
T Consensus 328 ~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~----------P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 395 (470)
T PLN02193 328 QGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVR----------PSERSVFASAAVGKHIVIFGGEIAMDPLAHV 395 (470)
T ss_pred CCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCC----------CCCcceeEEEEECCEEEEECCccCCcccccc
Confidence 9999999986432 246799999999999999765211 11256889999999999999964311
Q ss_pred ----CCeEEEEeecCCCccceeeeecCCC
Q 016239 342 ----YPACVCEIGTESDKCRCSWRRLPQL 366 (392)
Q Consensus 342 ----~~~~~~~~d~~~~~~~~~W~~~~~~ 366 (392)
....++.+|+.+++ |+.++.+
T Consensus 396 ~~~~~~ndv~~~D~~t~~----W~~~~~~ 420 (470)
T PLN02193 396 GPGQLTDGTFALDTETLQ----WERLDKF 420 (470)
T ss_pred CccceeccEEEEEcCcCE----EEEcccC
Confidence 11124445999999 9999765
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.98 E-value=5.1e-31 Score=253.90 Aligned_cols=203 Identities=19% Similarity=0.245 Sum_probs=175.0
Q ss_pred CCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc------ceEecCCcCceeecC
Q 016239 60 SPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR------FGFSRILNTSWHLTS 133 (392)
Q Consensus 60 ~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~------~~ynp~~~~~W~~~~ 133 (392)
..++.+|++||.+.......++.|||.+++|..+++|+.+|..+++++.+|.||++||. ++|||. +++|..++
T Consensus 269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~-~n~W~~~~ 347 (480)
T PHA02790 269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHG-DAAWVNMP 347 (480)
T ss_pred EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECC-CCeEEECC
Confidence 36788999999876556678999999999999999999999999999999999999993 899999 79999999
Q ss_pred CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCC
Q 016239 134 PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGY 213 (392)
Q Consensus 134 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~ 213 (392)
+|+.+|..++++++ +++||++||.+. ...++++||+.+++|+.+++|+.+ |..
T Consensus 348 ~l~~~r~~~~~~~~-----------------~g~IYviGG~~~--------~~~~ve~ydp~~~~W~~~~~m~~~-r~~- 400 (480)
T PHA02790 348 SLLKPRCNPAVASI-----------------NNVIYVIGGHSE--------TDTTTEYLLPNHDQWQFGPSTYYP-HYK- 400 (480)
T ss_pred CCCCCCcccEEEEE-----------------CCEEEEecCcCC--------CCccEEEEeCCCCEEEeCCCCCCc-ccc-
Confidence 99999999999999 999999999731 124799999999999999999987 665
Q ss_pred CccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239 214 SSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS 293 (392)
Q Consensus 214 ~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~ 293 (392)
+++++++|+||++|| .+.+||+++++|+.+++++.++ ..+.+++.+|+||++||..... ....+.+||+.+
T Consensus 401 ----~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r-~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~ 471 (480)
T PHA02790 401 ----SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPR-DNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRT 471 (480)
T ss_pred ----ceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCc-cccEEEEECCEEEEECCcCCCc-ccceEEEEECCC
Confidence 788899999999998 4689999999999998887644 4556689999999999965332 134677889999
Q ss_pred cceEec
Q 016239 294 MEFSEI 299 (392)
Q Consensus 294 ~~W~~~ 299 (392)
++|+..
T Consensus 472 ~~W~~~ 477 (480)
T PHA02790 472 YSWNIW 477 (480)
T ss_pred CeEEec
Confidence 999864
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=3.9e-30 Score=241.12 Aligned_cols=259 Identities=15% Similarity=0.155 Sum_probs=189.3
Q ss_pred cCCCCCCEEEEEcccCCCCCCCceeeeeCC--CCceeeCCCCC-CCCCcceEEeecceEEeecC---------------c
Q 016239 57 TNASPRPWFFLFGLHNTSSRNNQSFAFDPA--SNSWFHLPPAQ-EPRAGSCFIGANGFFFTTTP---------------R 118 (392)
Q Consensus 57 ~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~g~i~v~gg---------------~ 118 (392)
..+..++.+|++||... ..++.||+. +++|..+++++ .+|..+++++.++.||++|| +
T Consensus 33 ~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred eEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccE
Confidence 34456889999988643 347888886 47899999987 47888888999999999987 2
Q ss_pred ceEecCCcCceeecCC-CCcCccCceEEE-EEcCCCCcccccCCcccCCCeEEEEeceeecC---cc-------------
Q 016239 119 FGFSRILNTSWHLTSP-LRFSRINPLVGV-FYDHDRGHCDLASGFACNLPKFIVVGGVRFIG---GL------------- 180 (392)
Q Consensus 119 ~~ynp~~~~~W~~~~~-~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~---~~------------- 180 (392)
++|||. +++|+.+++ +|.++..+++++ . +++||++||..... .+
T Consensus 109 ~~YD~~-~n~W~~~~~~~p~~~~~~~~~~~~-----------------~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~ 170 (376)
T PRK14131 109 YKYDPK-TNSWQKLDTRSPVGLAGHVAVSLH-----------------NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170 (376)
T ss_pred EEEeCC-CCEEEeCCCCCCCcccceEEEEee-----------------CCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence 689999 799999986 466666677666 6 89999999974210 00
Q ss_pred ------------cccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc------cE--EEEE
Q 016239 181 ------------VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FS--VSSF 240 (392)
Q Consensus 181 ------------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~--i~~y 240 (392)
.......++++||+.+++|+.++++|...+.+ ++++.++++||++||.. .. .+.|
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~-----~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~ 245 (376)
T PRK14131 171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG-----SAVVIKGNKLWLINGEIKPGLRTDAVKQGKF 245 (376)
T ss_pred hhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc-----ceEEEECCEEEEEeeeECCCcCChhheEEEe
Confidence 00001357999999999999999988643555 78888999999999953 12 3456
Q ss_pred ECCCCceeecccCCCCcc-------cceeEEeeCCeEEEEEeecCCCC---------------C-ceeEEEeecCccceE
Q 016239 241 DLKKHVWSEVQTLRPPGV-------MFSFLIASPNMLVLAGMCNAPRG---------------P-SFNLWKVDELSMEFS 297 (392)
Q Consensus 241 d~~~~~W~~i~~~~~~~~-------~~~~~~~~~g~l~v~gg~~~~~~---------------~-~~~v~~~d~~~~~W~ 297 (392)
|+++++|+.++.++..+. ..+..++.+++||++||...... . ...+.+||+++++|+
T Consensus 246 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 325 (376)
T PRK14131 246 TGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ 325 (376)
T ss_pred cCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence 889999999988765331 12224678999999998643210 0 123456799999999
Q ss_pred ecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCc
Q 016239 298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDK 355 (392)
Q Consensus 298 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~ 355 (392)
.+..||..+ ..+++++.+++|||+||..........+.. .++.++
T Consensus 326 ~~~~lp~~r-------------~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~ 371 (376)
T PRK14131 326 KVGELPQGL-------------AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKK 371 (376)
T ss_pred ccCcCCCCc-------------cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCE
Confidence 999999874 467889999999999996544334444444 655555
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=3.7e-30 Score=241.28 Aligned_cols=255 Identities=17% Similarity=0.152 Sum_probs=187.3
Q ss_pred eeeCCCCCCCCCcceEEeecceEEeecCc-----ceEecCC-cCceeecCCCC-cCccCceEEEEEcCCCCcccccCCcc
Q 016239 90 WFHLPPAQEPRAGSCFIGANGFFFTTTPR-----FGFSRIL-NTSWHLTSPLR-FSRINPLVGVFYDHDRGHCDLASGFA 162 (392)
Q Consensus 90 W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-----~~ynp~~-~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~ 162 (392)
+..+++||.++...++++.++.||+.||. ++||+.. +++|..++++| .+|..++++++
T Consensus 19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~--------------- 83 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI--------------- 83 (376)
T ss_pred cccCCCCCcCccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE---------------
Confidence 45788999998878888889999999884 7888752 37899999997 48988888899
Q ss_pred cCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC-CCCCCCCCCccceeeEE-ECCEEEEEeecc------
Q 016239 163 CNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-PADFRSGYSSQYLSSAL-FRGRFYVFGIYS------ 234 (392)
Q Consensus 163 ~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~------ 234 (392)
+++||++||..............++++||+.+++|+.++++ |.. +.+ ++++. .+++||++||..
T Consensus 84 --~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~-~~~-----~~~~~~~~~~IYv~GG~~~~~~~~ 155 (376)
T PRK14131 84 --DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAG-----HVAVSLHNGKAYITGGVNKNIFDG 155 (376)
T ss_pred --CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc-ccc-----eEEEEeeCCEEEEECCCCHHHHHH
Confidence 99999999974210000012345899999999999999853 443 433 55555 899999999953
Q ss_pred ---------------------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCC
Q 016239 235 ---------------------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRG 281 (392)
Q Consensus 235 ---------------------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~ 281 (392)
+.+++||+.+++|+.+++++..++..++++.++++||++||......
T Consensus 156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~ 235 (376)
T PRK14131 156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL 235 (376)
T ss_pred HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc
Confidence 46999999999999998877645566677888999999998654333
Q ss_pred CceeE--EEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC----------------CC
Q 016239 282 PSFNL--WKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK----------------YP 343 (392)
Q Consensus 282 ~~~~v--~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~----------------~~ 343 (392)
...++ +.||+++++|+.+..||..+... .+.++..+.+++.+++|||+||..... ..
T Consensus 236 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~-----~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 310 (376)
T PRK14131 236 RTDAVKQGKFTGNNLKWQKLPDLPPAPGGS-----SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKK 310 (376)
T ss_pred CChhheEEEecCCCcceeecCCCCCCCcCC-----cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcc
Confidence 34444 45678899999999998753100 000122344678999999999964311 01
Q ss_pred eEEEEe-ecCCCccceeeeecCCCCCcccccceE
Q 016239 344 ACVCEI-GTESDKCRCSWRRLPQLPSPVNEFHKV 376 (392)
Q Consensus 344 ~~~~~~-d~~~~~~~~~W~~~~~~p~~~~~~~~~ 376 (392)
...+|+ |+++++ |+.+++||.++..++++
T Consensus 311 ~~~~e~yd~~~~~----W~~~~~lp~~r~~~~av 340 (376)
T PRK14131 311 SWSDEIYALVNGK----WQKVGELPQGLAYGVSV 340 (376)
T ss_pred eeehheEEecCCc----ccccCcCCCCccceEEE
Confidence 123455 999999 99999999998776554
No 15
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=6.9e-30 Score=245.42 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=192.8
Q ss_pred hhhhhhhcCcc-hhhHhhhccCCCCCCEEEEEcccCC-CC-CCCceeeeeCCCCceeeCCCC---CC-CCCcceEEeecc
Q 016239 38 KSWRSIISAPS-FSALIAHNTNASPRPWFFLFGLHNT-SS-RNNQSFAFDPASNSWFHLPPA---QE-PRAGSCFIGANG 110 (392)
Q Consensus 38 k~W~~l~~~~~-f~~~~~~~~~~~~~~~l~~~gg~~~-~~-~~~~~~~yd~~~~~W~~~~~~---~~-~r~~~~~~~~~g 110 (392)
.+|..+..... ...|..| .++..+..||++||... .. ..+++++||+.+++|..++.+ |. .|..+++++.++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h-~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~ 229 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSH-GIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS 229 (470)
T ss_pred ceEEEcccCCCCCCCcccc-EEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC
Confidence 57987765321 2234434 44456789999999743 22 336799999999999987643 33 245678888999
Q ss_pred eEEeecCc---------ceEecCCcCceeecCCC---CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecC
Q 016239 111 FFFTTTPR---------FGFSRILNTSWHLTSPL---RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIG 178 (392)
Q Consensus 111 ~i~v~gg~---------~~ynp~~~~~W~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~ 178 (392)
.||++||. ++||+. +++|++++++ |.+|..|++++. +++||++||.+.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~-t~~W~~l~~~~~~P~~R~~h~~~~~-----------------~~~iYv~GG~~~-- 289 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTT-TNEWKLLTPVEEGPTPRSFHSMAAD-----------------EENVYVFGGVSA-- 289 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECC-CCEEEEcCcCCCCCCCccceEEEEE-----------------CCEEEEECCCCC--
Confidence 99999983 799999 7999999888 789999999998 999999999732
Q ss_pred cccccccceEEEEEeCCCCCeecCCC---CCCCCCCCCCccceeeEEECCEEEEEeecc----cEEEEEECCCCceeecc
Q 016239 179 GLVDIEDRLAVEIYDPHSDSWELCPP---LPADFRSGYSSQYLSSALFRGRFYVFGIYS----FSVSSFDLKKHVWSEVQ 251 (392)
Q Consensus 179 ~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~i~~yd~~~~~W~~i~ 251 (392)
.....++++||+.+++|+.++. ++.+ |.. ++++++++++|++||.. +.+++||+.+++|+.++
T Consensus 290 ----~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-R~~-----~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 290 ----TARLKTLDSYNIVDKKWFHCSTPGDSFSI-RGG-----AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred ----CCCcceEEEEECCCCEEEeCCCCCCCCCC-CCC-----cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEec
Confidence 1234579999999999998864 3443 554 78888999999999965 57999999999999997
Q ss_pred cC--CCCcccceeEEeeCCeEEEEEeecCCC--------CCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccce
Q 016239 252 TL--RPPGVMFSFLIASPNMLVLAGMCNAPR--------GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFAS 321 (392)
Q Consensus 252 ~~--~~~~~~~~~~~~~~g~l~v~gg~~~~~--------~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~ 321 (392)
.+ .|..+..+.++.++++|||+||..... ....++|.||+.+++|+++..++... +.+.+|..
T Consensus 360 ~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~-------~~P~~R~~ 432 (470)
T PLN02193 360 TFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEE-------ETPSSRGW 432 (470)
T ss_pred cCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCC-------CCCCCCcc
Confidence 64 233445566788899999999864311 12357999999999999998765320 11222333
Q ss_pred eE--E-EEeC-CEEEEEecccc
Q 016239 322 LK--C-VGLG-NLIYVFNEEYH 339 (392)
Q Consensus 322 ~~--~-~~~~-~~i~v~gg~~~ 339 (392)
++ + ...+ +.|+++||...
T Consensus 433 ~~~~~~~~~~~~~~~~fGG~~~ 454 (470)
T PLN02193 433 TASTTGTIDGKKGLVMHGGKAP 454 (470)
T ss_pred ccceeeEEcCCceEEEEcCCCC
Confidence 32 2 2333 45999999643
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=3e-30 Score=253.80 Aligned_cols=238 Identities=20% Similarity=0.266 Sum_probs=192.6
Q ss_pred hccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCC-CCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceE
Q 016239 34 SSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSS-RNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFF 112 (392)
Q Consensus 34 ~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i 112 (392)
....++|..+...|. .. ...++..++.+|++||..... ...+++.||+.+++|..+++|+.+|..+++++.+|.|
T Consensus 270 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~l 345 (534)
T PHA03098 270 YSPLSEINTIIDIHY--VY--CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRI 345 (534)
T ss_pred chhhhhcccccCccc--cc--cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEE
Confidence 334456666554332 11 123455688999999986543 4468999999999999999999999999999999999
Q ss_pred EeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc
Q 016239 113 FTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183 (392)
Q Consensus 113 ~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~ 183 (392)
|++||. ++|||. +++|+.++++|.+|..++++++ +++||++||.... .
T Consensus 346 yv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~lp~~r~~~~~~~~-----------------~~~iYv~GG~~~~-----~ 402 (534)
T PHA03098 346 YVIGGIYNSISLNTVESWKPG-ESKWREEPPLIFPRYNPCVVNV-----------------NNLIYVIGGISKN-----D 402 (534)
T ss_pred EEEeCCCCCEecceEEEEcCC-CCceeeCCCcCcCCccceEEEE-----------------CCEEEEECCcCCC-----C
Confidence 999983 799999 7999999999999999999999 9999999996321 1
Q ss_pred ccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc--------cEEEEEECCCCceeecccCCC
Q 016239 184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS--------FSVSSFDLKKHVWSEVQTLRP 255 (392)
Q Consensus 184 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--------~~i~~yd~~~~~W~~i~~~~~ 255 (392)
....++++||+.+++|+.++++|.+ |.+ ++++..+++||++||.. ..+++||+.+++|+.++.++.
T Consensus 403 ~~~~~v~~yd~~t~~W~~~~~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 476 (534)
T PHA03098 403 ELLKTVECFSLNTNKWSKGSPLPIS-HYG-----GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF 476 (534)
T ss_pred cccceEEEEeCCCCeeeecCCCCcc-ccC-----ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc
Confidence 2356899999999999999999887 665 78889999999999964 248999999999999987766
Q ss_pred CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHH
Q 016239 256 PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDF 306 (392)
Q Consensus 256 ~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~ 306 (392)
++ ..+.++..+++||++||...... ...+++||+.+++|+.++.+|...
T Consensus 477 ~r-~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 477 PR-INASLCIFNNKIYVVGGDKYEYY-INEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred cc-ccceEEEECCEEEEEcCCcCCcc-cceeEEEeCCCCEEEecCCCcccc
Confidence 44 44556778999999998654332 457889999999999999988753
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=244.03 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=167.0
Q ss_pred EEeecceEEeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEecee
Q 016239 105 FIGANGFFFTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVR 175 (392)
Q Consensus 105 ~~~~~g~i~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~ 175 (392)
++..++.||++||. +.|||. +++|..+++|+.+|..++++++ +++||++||.+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~m~~~r~~~~~v~~-----------------~~~iYviGG~~ 328 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPPMNSPRLYASGVPA-----------------NNKLYVVGGLP 328 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCCCCchhhcceEEEE-----------------CCEEEEECCcC
Confidence 44579999999983 789999 7999999999999999999999 99999999973
Q ss_pred ecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc---cEEEEEECCCCceeeccc
Q 016239 176 FIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS---FSVSSFDLKKHVWSEVQT 252 (392)
Q Consensus 176 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~i~~yd~~~~~W~~i~~ 252 (392)
...+++.||+.+++|+.+++||.+ |.. ++++.++|+||++||.. ..+.+||+.+++|+.+++
T Consensus 329 ---------~~~sve~ydp~~n~W~~~~~l~~~-r~~-----~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 329 ---------NPTSVERWFHGDAAWVNMPSLLKP-RCN-----PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ---------CCCceEEEECCCCeEEECCCCCCC-Ccc-----cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 124699999999999999999987 766 78899999999999965 468899999999999988
Q ss_pred CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEE
Q 016239 253 LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIY 332 (392)
Q Consensus 253 ~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 332 (392)
++.++.. +.+++++|+||++||. . .+||+.+++|+.+++||.. |..+++++++|+||
T Consensus 394 m~~~r~~-~~~~~~~~~IYv~GG~-------~--e~ydp~~~~W~~~~~m~~~-------------r~~~~~~v~~~~IY 450 (480)
T PHA02790 394 TYYPHYK-SCALVFGRRLFLVGRN-------A--EFYCESSNTWTLIDDPIYP-------------RDNPELIIVDNKLL 450 (480)
T ss_pred CCCcccc-ceEEEECCEEEEECCc-------e--EEecCCCCcEeEcCCCCCC-------------ccccEEEEECCEEE
Confidence 8775544 5567899999999972 3 3569999999999999877 45889999999999
Q ss_pred EEeccccCCCCeEEEEe-ecCCCccceeeeec
Q 016239 333 VFNEEYHKKYPACVCEI-GTESDKCRCSWRRL 363 (392)
Q Consensus 333 v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~~~ 363 (392)
++||.... .....+|. |+++|+ |+..
T Consensus 451 viGG~~~~-~~~~~ve~Yd~~~~~----W~~~ 477 (480)
T PHA02790 451 LIGGFYRG-SYIDTIEVYNNRTYS----WNIW 477 (480)
T ss_pred EECCcCCC-cccceEEEEECCCCe----EEec
Confidence 99995432 22345666 999999 9875
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=202.62 Aligned_cols=244 Identities=16% Similarity=0.261 Sum_probs=192.2
Q ss_pred hccCCCCCCEEEEEcccCC-----CCCCCceeeeeCCCCceeeCCC-------------CCCCCCcceEEeecceEEeec
Q 016239 55 HNTNASPRPWFFLFGLHNT-----SSRNNQSFAFDPASNSWFHLPP-------------AQEPRAGSCFIGANGFFFTTT 116 (392)
Q Consensus 55 ~~~~~~~~~~l~~~gg~~~-----~~~~~~~~~yd~~~~~W~~~~~-------------~~~~r~~~~~~~~~g~i~v~g 116 (392)
.++++..+..+|.+||+=. ...--++.+++..+-+|.++++ .|-.|.+|+++..++.+|+.|
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 3466778999999999632 1233568899999999998865 123478899999999999999
Q ss_pred Cc----------ceEecCCcCceeec---CCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc
Q 016239 117 PR----------FGFSRILNTSWHLT---SPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183 (392)
Q Consensus 117 g~----------~~ynp~~~~~W~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~ 183 (392)
|. +.|||. +++|++. ..+|.+|..|+++++ ++.+|++||+... ..
T Consensus 96 GRND~egaCN~Ly~fDp~-t~~W~~p~v~G~vPgaRDGHsAcV~-----------------gn~MyiFGGye~~----a~ 153 (392)
T KOG4693|consen 96 GRNDDEGACNLLYEFDPE-TNVWKKPEVEGFVPGARDGHSACVW-----------------GNQMYIFGGYEED----AQ 153 (392)
T ss_pred CccCcccccceeeeeccc-cccccccceeeecCCccCCceeeEE-----------------CcEEEEecChHHH----HH
Confidence 84 799999 7999864 457889999999999 9999999998321 11
Q ss_pred ccceEEEEEeCCCCCeecCCCC--CCCCCCCCCccceeeEEECCEEEEEeecc--------------cEEEEEECCCCce
Q 016239 184 EDRLAVEIYDPHSDSWELCPPL--PADFRSGYSSQYLSSALFRGRFYVFGIYS--------------FSVSSFDLKKHVW 247 (392)
Q Consensus 184 ~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--------------~~i~~yd~~~~~W 247 (392)
.-..++.++|..|.+|+.+... |..+|. +|+++++++++|+|||.. +.|..+|+.++.|
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD-----FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW 228 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGDPPRWRD-----FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAW 228 (392)
T ss_pred hhhccceeEeccceeeeehhccCCCchhhh-----hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccc
Confidence 2245799999999999998643 333454 589999999999999975 3899999999999
Q ss_pred eeccc--CCCCcccceeEEeeCCeEEEEEeecCCC-CCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccce
Q 016239 248 SEVQT--LRPPGVMFSFLIASPNMLVLAGMCNAPR-GPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFAS 321 (392)
Q Consensus 248 ~~i~~--~~~~~~~~~~~~~~~g~l~v~gg~~~~~-~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~ 321 (392)
...+. +.|.++..+.+.+.+++||++||+...- ..-.++|.+|+.+..|+.+.. -|.. |..
T Consensus 229 ~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-------------RRR 295 (392)
T KOG4693|consen 229 TRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-------------RRR 295 (392)
T ss_pred ccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-------------ccc
Confidence 98754 3345566677799999999999976542 224789999999999998865 3443 457
Q ss_pred eEEEEeCCEEEEEeccc
Q 016239 322 LKCVGLGNLIYVFNEEY 338 (392)
Q Consensus 322 ~~~~~~~~~i~v~gg~~ 338 (392)
..+++.|+++|+|||+.
T Consensus 296 qC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 296 QCSVVSGGKVYLFGGTS 312 (392)
T ss_pred eeEEEECCEEEEecCCC
Confidence 77889999999999954
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=9.9e-28 Score=220.90 Aligned_cols=212 Identities=13% Similarity=0.118 Sum_probs=165.2
Q ss_pred hhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCce----eeCCCCCCCCCcceEEeecceEEe
Q 016239 39 SWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSW----FHLPPAQEPRAGSCFIGANGFFFT 114 (392)
Q Consensus 39 ~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~g~i~v 114 (392)
+|..+...|..... +..+..+..||++||.+....+.+++.||+.+++| ..++++|.+|..+++++.++.||+
T Consensus 52 ~W~~~~~lp~~r~~---~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv 128 (323)
T TIGR03548 52 KWVKDGQLPYEAAY---GASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYV 128 (323)
T ss_pred eEEEcccCCccccc---eEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEE
Confidence 68887766653222 23445588999999987766778899999999998 778999999999999999999999
Q ss_pred ecCc---------ceEecCCcCceeecCCCCc-CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccc
Q 016239 115 TTPR---------FGFSRILNTSWHLTSPLRF-SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIE 184 (392)
Q Consensus 115 ~gg~---------~~ynp~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~ 184 (392)
+||. ++|||. +++|+.+++++. +|..++++++ +++||++||.+ ..
T Consensus 129 ~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~~r~~~~~~~~-----------------~~~iYv~GG~~-------~~ 183 (323)
T TIGR03548 129 GGGNRNGKPSNKSYLFNLE-TQEWFELPDFPGEPRVQPVCVKL-----------------QNELYVFGGGS-------NI 183 (323)
T ss_pred EeCcCCCccCceEEEEcCC-CCCeeECCCCCCCCCCcceEEEE-----------------CCEEEEEcCCC-------Cc
Confidence 9983 799999 799999999874 7888888888 99999999973 12
Q ss_pred cceEEEEEeCCCCCeecCCCCCCC--CCCCCCccceeeEEECCEEEEEeecc----------------------------
Q 016239 185 DRLAVEIYDPHSDSWELCPPLPAD--FRSGYSSQYLSSALFRGRFYVFGIYS---------------------------- 234 (392)
Q Consensus 185 ~~~~~~~yd~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~g~ly~~gg~~---------------------------- 234 (392)
...++++||+.+++|+.+++++.. .+.. ...++++..+++||++||..
T Consensus 184 ~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
T TIGR03548 184 AYTDGYKYSPKKNQWQKVADPTTDSEPISL--LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL 261 (323)
T ss_pred cccceEEEecCCCeeEECCCCCCCCCceec--cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Confidence 234689999999999999876421 0110 01233445579999999965
Q ss_pred ---------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCC
Q 016239 235 ---------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPR 280 (392)
Q Consensus 235 ---------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~ 280 (392)
+.+++||+.+++|+.++.++...+..+.++.++++||++||.....
T Consensus 262 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 262 KPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred CCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 4699999999999999877644455566789999999999865543
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.95 E-value=5.5e-26 Score=189.44 Aligned_cols=236 Identities=18% Similarity=0.277 Sum_probs=183.2
Q ss_pred CCCcceEEeecceEEeecCc--------------ceEecCCcCceeecCC-------------CCcCccCceEEEEEcCC
Q 016239 99 PRAGSCFIGANGFFFTTTPR--------------FGFSRILNTSWHLTSP-------------LRFSRINPLVGVFYDHD 151 (392)
Q Consensus 99 ~r~~~~~~~~~g~i~v~gg~--------------~~ynp~~~~~W~~~~~-------------~~~~r~~~~~~~~~~~~ 151 (392)
.|.+|++++.+..||-+||. .++|.. +-+|.++|+ .|..|+.|+++.+
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~-~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y---- 87 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAE-NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY---- 87 (392)
T ss_pred ccccceeeeecceEEecCCcccccccccCCcceeEEeecc-ceeEEecCcccccccccCCCCccchhhcCceEEEE----
Confidence 46788889999999999983 577777 679998875 3567999999999
Q ss_pred CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC---CCCCCCCCCCCccceeeEEECCEEE
Q 016239 152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP---PLPADFRSGYSSQYLSSALFRGRFY 228 (392)
Q Consensus 152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~g~ly 228 (392)
++++|+.||.+- +....+..+.||+++++|.... .+|.. |.+ |++++.++.+|
T Consensus 88 -------------~d~~yvWGGRND-----~egaCN~Ly~fDp~t~~W~~p~v~G~vPga-RDG-----HsAcV~gn~My 143 (392)
T KOG4693|consen 88 -------------QDKAYVWGGRND-----DEGACNLLYEFDPETNVWKKPEVEGFVPGA-RDG-----HSACVWGNQMY 143 (392)
T ss_pred -------------cceEEEEcCccC-----cccccceeeeeccccccccccceeeecCCc-cCC-----ceeeEECcEEE
Confidence 999999999852 2345678999999999998764 45665 888 99999999999
Q ss_pred EEeecc-------cEEEEEECCCCceeeccc--CCCCcccceeEEeeCCeEEEEEeecCCCCC--------ceeEEEeec
Q 016239 229 VFGIYS-------FSVSSFDLKKHVWSEVQT--LRPPGVMFSFLIASPNMLVLAGMCNAPRGP--------SFNLWKVDE 291 (392)
Q Consensus 229 ~~gg~~-------~~i~~yd~~~~~W~~i~~--~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~--------~~~v~~~d~ 291 (392)
+|||+. .++.++|+.+.+|+.+.. .|+..+.+++.+++++.+|++||......+ ...|-.+|.
T Consensus 144 iFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~ 223 (392)
T KOG4693|consen 144 IFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL 223 (392)
T ss_pred EecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec
Confidence 999975 589999999999999855 345566778888899999999986544321 245667799
Q ss_pred CccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCC---eEEEEeecCCCccceeeeec---CC
Q 016239 292 LSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYP---ACVCEIGTESDKCRCSWRRL---PQ 365 (392)
Q Consensus 292 ~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~---~~~~~~d~~~~~~~~~W~~~---~~ 365 (392)
.+..|..-+.-+.. +.+|..++..+.+++||+||| |.+.-. ...+.+||.+.. |..+ ++
T Consensus 224 ~T~aW~r~p~~~~~----------P~GRRSHS~fvYng~~Y~FGG-Yng~ln~HfndLy~FdP~t~~----W~~I~~~Gk 288 (392)
T KOG4693|consen 224 ATGAWTRTPENTMK----------PGGRRSHSTFVYNGKMYMFGG-YNGTLNVHFNDLYCFDPKTSM----WSVISVRGK 288 (392)
T ss_pred cccccccCCCCCcC----------CCcccccceEEEcceEEEecc-cchhhhhhhcceeecccccch----heeeeccCC
Confidence 99999987543222 224679999999999999999 333211 223344999999 9988 46
Q ss_pred CCCcccccceEEE
Q 016239 366 LPSPVNEFHKVIS 378 (392)
Q Consensus 366 ~p~~~~~~~~~~~ 378 (392)
-|.++++++|+++
T Consensus 289 ~P~aRRRqC~~v~ 301 (392)
T KOG4693|consen 289 YPSARRRQCSVVS 301 (392)
T ss_pred CCCcccceeEEEE
Confidence 7888888866543
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.87 E-value=3.1e-20 Score=178.32 Aligned_cols=238 Identities=16% Similarity=0.195 Sum_probs=183.1
Q ss_pred CCCCCCCCcceEEeecceEEeecCc-----------ceEecCCcCceeecC---CCCcCccCceEEEEEcCCCCcccccC
Q 016239 94 PPAQEPRAGSCFIGANGFFFTTTPR-----------FGFSRILNTSWHLTS---PLRFSRINPLVGVFYDHDRGHCDLAS 159 (392)
Q Consensus 94 ~~~~~~r~~~~~~~~~g~i~v~gg~-----------~~ynp~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~ 159 (392)
...|.+|..|+++..++.+||+||. +++|.. +..|.... ..|.+|..|.++.+
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~-~~~w~~~~~~g~~p~~r~g~~~~~~------------ 121 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLE-SQLWTKPAATGDEPSPRYGHSLSAV------------ 121 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecC-CcccccccccCCCCCcccceeEEEE------------
Confidence 4467789999999889999999983 788887 68887653 45678999999999
Q ss_pred CcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC---CCCCCCCCCCCccceeeEEECCEEEEEeecc--
Q 016239 160 GFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP---PLPADFRSGYSSQYLSSALFRGRFYVFGIYS-- 234 (392)
Q Consensus 160 ~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-- 234 (392)
+.+||++||.+. ......+++.||..+++|+.+. ..|.+ |.+ |+++.++.+||+|||..
T Consensus 122 -----~~~l~lfGG~~~-----~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~-r~~-----Hs~~~~g~~l~vfGG~~~~ 185 (482)
T KOG0379|consen 122 -----GDKLYLFGGTDK-----KYRNLNELHSLDLSTRTWSLLSPTGDPPPP-RAG-----HSATVVGTKLVVFGGIGGT 185 (482)
T ss_pred -----CCeEEEEccccC-----CCCChhheEeccCCCCcEEEecCcCCCCCC-ccc-----ceEEEECCEEEEECCccCc
Confidence 999999999853 1234668999999999999886 33554 666 99999999999999875
Q ss_pred ----cEEEEEECCCCceeecccC--CCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHH
Q 016239 235 ----FSVSSFDLKKHVWSEVQTL--RPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLY 308 (392)
Q Consensus 235 ----~~i~~yd~~~~~W~~i~~~--~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~ 308 (392)
+++++||+.+.+|.++... .|.++..+++++.+++++|+||.........++|.||..+.+|+++......
T Consensus 186 ~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~--- 262 (482)
T KOG0379|consen 186 GDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL--- 262 (482)
T ss_pred ccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCC---
Confidence 5899999999999998553 4456778889999999999987664444568999999999999966543221
Q ss_pred hhcCCcccCccceeEEEEeCCEEEEEeccccCC--CCeEEEEeecCCCccceeeeecCCCC----Ccccccc
Q 016239 309 SLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK--YPACVCEIGTESDKCRCSWRRLPQLP----SPVNEFH 374 (392)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~--~~~~~~~~d~~~~~~~~~W~~~~~~p----~~~~~~~ 374 (392)
+.+|+.|..+..++.++++||..... .....+-+|.+++. |..+.... .++..+.
T Consensus 263 -------p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~----w~~~~~~~~~~~~~~~~~~ 323 (482)
T KOG0379|consen 263 -------PSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLV----WSKVESVGVVRPSPRLGHA 323 (482)
T ss_pred -------CCCcceeeeEEECCEEEEEcCCcccccccccccccccccccc----eeeeecccccccccccccc
Confidence 22366888889999999999965431 22333444777777 99986554 4444443
No 22
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=1.7e-20 Score=169.72 Aligned_cols=267 Identities=15% Similarity=0.211 Sum_probs=185.4
Q ss_pred hhhhhhcC--cchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeC---CCCCCCCCcceEEeecceEE
Q 016239 39 SWRSIISA--PSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHL---PPAQEPRAGSCFIGANGFFF 113 (392)
Q Consensus 39 ~W~~l~~~--~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g~i~ 113 (392)
+|+.+..+ |....+|.| +++....++.+|||-++ ...++++.|+..+|+|..- ..+|.+...|+++..+.+||
T Consensus 18 rWrrV~~~tGPvPrpRHGH-RAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril 95 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGH-RAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL 95 (830)
T ss_pred ceEEEecccCCCCCccccc-hheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE
Confidence 58777665 455567766 55667888999988765 3568899999999999642 46777777888888899999
Q ss_pred eecCc--------ceEecCCcC--ceeecC-------CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceee
Q 016239 114 TTTPR--------FGFSRILNT--SWHLTS-------PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRF 176 (392)
Q Consensus 114 v~gg~--------~~ynp~~~~--~W~~~~-------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~ 176 (392)
++||. ..|... .. +|+++. ++|.+|..|+..++ ++|.|+|||...
T Consensus 96 vFGGMvEYGkYsNdLYELQ-asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~-----------------gnKcYlFGGLaN 157 (830)
T KOG4152|consen 96 VFGGMVEYGKYSNDLYELQ-ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV-----------------GNKCYLFGGLAN 157 (830)
T ss_pred EEccEeeeccccchHHHhh-hhhhhHhhcCCCCCCCCCCCCCccCceeEEe-----------------ccEeEEeccccc
Confidence 99995 234443 22 566663 35778999999999 999999999754
Q ss_pred cCccccc---ccceEEEEEeCCCC----CeecC---CCCCCCCCCCCCccceeeEEE------CCEEEEEeecc----cE
Q 016239 177 IGGLVDI---EDRLAVEIYDPHSD----SWELC---PPLPADFRSGYSSQYLSSALF------RGRFYVFGIYS----FS 236 (392)
Q Consensus 177 ~~~~~~~---~~~~~~~~yd~~~~----~W~~~---~~~~~~~~~~~~~~~~~~~~~------~g~ly~~gg~~----~~ 236 (392)
....... ..+++.++.+...+ .|... ..+|.+ |.+ |.++.+ ..++|++||.+ ++
T Consensus 158 dseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p-RES-----HTAViY~eKDs~~skmvvyGGM~G~RLgD 231 (830)
T KOG4152|consen 158 DSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP-RES-----HTAVIYTEKDSKKSKMVVYGGMSGCRLGD 231 (830)
T ss_pred cccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCC-ccc-----ceeEEEEeccCCcceEEEEcccccccccc
Confidence 3322111 13456666665533 48755 356666 666 777776 34799999987 58
Q ss_pred EEEEECCCCceeeccc--CCCCcccceeEEeeCCeEEEEEeecCC-------------CCCceeEEEeecCccceEeccc
Q 016239 237 VSSFDLKKHVWSEVQT--LRPPGVMFSFLIASPNMLVLAGMCNAP-------------RGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 237 i~~yd~~~~~W~~i~~--~~~~~~~~~~~~~~~g~l~v~gg~~~~-------------~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
+|..|+++..|.+... .++..+..+..+.+++++|++||.--. ......+=.++.+++.|+.+-.
T Consensus 232 LW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 232 LWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred eeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeee
Confidence 9999999999998633 333345566668999999999984211 0011222233777888986532
Q ss_pred CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239 302 MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE 337 (392)
Q Consensus 302 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~ 337 (392)
-.. -++.-+++|..|.++++|.++||..|+
T Consensus 312 d~~------ed~tiPR~RAGHCAvAigtRlYiWSGR 341 (830)
T KOG4152|consen 312 DTL------EDNTIPRARAGHCAVAIGTRLYIWSGR 341 (830)
T ss_pred ccc------cccccccccccceeEEeccEEEEEecc
Confidence 111 122234568899999999999999985
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=164.98 Aligned_cols=233 Identities=13% Similarity=0.205 Sum_probs=167.6
Q ss_pred CCCCCCCCcceEEee--cceEEeecC-------------cceEecCCcCceeec--CCCCcCccCceEEEEEcCCCCccc
Q 016239 94 PPAQEPRAGSCFIGA--NGFFFTTTP-------------RFGFSRILNTSWHLT--SPLRFSRINPLVGVFYDHDRGHCD 156 (392)
Q Consensus 94 ~~~~~~r~~~~~~~~--~g~i~v~gg-------------~~~ynp~~~~~W~~~--~~~~~~r~~~~~~~~~~~~~~~~~ 156 (392)
-++|.||.++++.+. .+-|+++|| .|.||.. +++|+++ |+.|.||+.|.++++.
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k-~~eWkk~~spn~P~pRsshq~va~~-------- 131 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTK-KNEWKKVVSPNAPPPRSSHQAVAVP-------- 131 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecc-ccceeEeccCCCcCCCccceeEEec--------
Confidence 356778888877765 445666666 3889998 7999976 6678899999999883
Q ss_pred ccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEECCEEEEEeecc
Q 016239 157 LASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALFRGRFYVFGIYS 234 (392)
Q Consensus 157 ~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~ 234 (392)
.+.+|++||.-............+.|.||..+++|+.+. .-|.+ |.+ |.+++....|++|||+.
T Consensus 132 --------s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~-RSG-----HRMvawK~~lilFGGFh 197 (521)
T KOG1230|consen 132 --------SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP-RSG-----HRMVAWKRQLILFGGFH 197 (521)
T ss_pred --------cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC-Ccc-----ceeEEeeeeEEEEccee
Confidence 579999999643222111122347999999999999986 45666 887 99999999999999985
Q ss_pred ---------cEEEEEECCCCceeecccCC--C-CcccceeEEeeCCeEEEEEeecCCC--------CCceeEEEeecCc-
Q 016239 235 ---------FSVSSFDLKKHVWSEVQTLR--P-PGVMFSFLIASPNMLVLAGMCNAPR--------GPSFNLWKVDELS- 293 (392)
Q Consensus 235 ---------~~i~~yd~~~~~W~~i~~~~--~-~~~~~~~~~~~~g~l~v~gg~~~~~--------~~~~~v~~~d~~~- 293 (392)
++|++||+.+-+|+.+.+.. | ++.+++..+.-+|.|||.||+.... ..-.++|.|++..
T Consensus 198 d~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~ 277 (521)
T KOG1230|consen 198 DSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG 277 (521)
T ss_pred cCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence 58999999999999996643 3 4555555455599999999975432 1246899998877
Q ss_pred ----cceEecccCCHHHHHhhcCCcccCccceeEEEEe-CCEEEEEeccccCCCC---------eEEEEeecCCCcccee
Q 016239 294 ----MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL-GNLIYVFNEEYHKKYP---------ACVCEIGTESDKCRCS 359 (392)
Q Consensus 294 ----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~gg~~~~~~~---------~~~~~~d~~~~~~~~~ 359 (392)
-.|.++...... +.+|+.++|++. +++-++|||-++.... ...|-+|...++
T Consensus 278 ~~dKw~W~kvkp~g~k----------PspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nr---- 343 (521)
T KOG1230|consen 278 REDKWVWTKVKPSGVK----------PSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNR---- 343 (521)
T ss_pred CCcceeEeeccCCCCC----------CCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccch----
Confidence 678887653222 113678888755 5599999996652111 111223778888
Q ss_pred eeec
Q 016239 360 WRRL 363 (392)
Q Consensus 360 W~~~ 363 (392)
|...
T Consensus 344 W~~~ 347 (521)
T KOG1230|consen 344 WSEG 347 (521)
T ss_pred hhHh
Confidence 9765
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.85 E-value=2.4e-19 Score=172.21 Aligned_cols=218 Identities=21% Similarity=0.300 Sum_probs=176.6
Q ss_pred cCCCCCCEEEEEcccCCCCCCCc--eeeeeCCCCceeeC---CCCCCCCCcceEEeecceEEeecCc----------ceE
Q 016239 57 TNASPRPWFFLFGLHNTSSRNNQ--SFAFDPASNSWFHL---PPAQEPRAGSCFIGANGFFFTTTPR----------FGF 121 (392)
Q Consensus 57 ~~~~~~~~l~~~gg~~~~~~~~~--~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g~i~v~gg~----------~~y 121 (392)
+++..+..++++||......... ++.+|..+..|... ...|.+|.++.++..+..||++||. +.|
T Consensus 65 s~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~ 144 (482)
T KOG0379|consen 65 SAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSL 144 (482)
T ss_pred ceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEec
Confidence 45555899999999876555444 99999999999765 3456789999999999999999984 689
Q ss_pred ecCCcCceeecC---CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC
Q 016239 122 SRILNTSWHLTS---PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS 198 (392)
Q Consensus 122 np~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~ 198 (392)
|+. +++|..+. .+|.+|..|+++++ +.++||+||....+ ...+++++||..+.+
T Consensus 145 d~~-t~~W~~l~~~~~~P~~r~~Hs~~~~-----------------g~~l~vfGG~~~~~-----~~~ndl~i~d~~~~~ 201 (482)
T KOG0379|consen 145 DLS-TRTWSLLSPTGDPPPPRAGHSATVV-----------------GTKLVVFGGIGGTG-----DSLNDLHIYDLETST 201 (482)
T ss_pred cCC-CCcEEEecCcCCCCCCcccceEEEE-----------------CCEEEEECCccCcc-----cceeeeeeecccccc
Confidence 999 79998764 46889999999999 99999999984322 246799999999999
Q ss_pred eecCC---CCCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccC--CCCcccceeEEeeC
Q 016239 199 WELCP---PLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTL--RPPGVMFSFLIASP 267 (392)
Q Consensus 199 W~~~~---~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~--~~~~~~~~~~~~~~ 267 (392)
|.++. ..|.+ |.+ |+++.++++++++||.. ++++.+|+.+.+|..+... .+.++..+.++..+
T Consensus 202 W~~~~~~g~~P~p-R~g-----H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~ 275 (482)
T KOG0379|consen 202 WSELDTQGEAPSP-RYG-----HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSG 275 (482)
T ss_pred ceecccCCCCCCC-CCC-----ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEEC
Confidence 99885 44555 777 99999999999998876 4899999999999976543 23455566667889
Q ss_pred CeEEEEEeecCCCC-CceeEEEeecCccceEecccCC
Q 016239 268 NMLVLAGMCNAPRG-PSFNLWKVDELSMEFSEIAIMP 303 (392)
Q Consensus 268 g~l~v~gg~~~~~~-~~~~v~~~d~~~~~W~~~~~~p 303 (392)
.+++++||...... ...++|.||..+..|.++....
T Consensus 276 ~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 276 DHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred CEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 99999998665422 4678899999999999998877
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.82 E-value=7e-19 Score=155.58 Aligned_cols=258 Identities=19% Similarity=0.242 Sum_probs=180.2
Q ss_pred cccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccC--CC--CCCCceeeee
Q 016239 9 AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN--TS--SRNNQSFAFD 84 (392)
Q Consensus 9 ~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~--~~--~~~~~~~~yd 84 (392)
+-++|-++.|.+|+..|..+......- .....|+. +.+....+-+...-|+++||.- +. ...++++.||
T Consensus 32 l~~e~de~~i~~~iq~~eaK~~e~~~e------~~~~~Psp-Rsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn 104 (521)
T KOG1230|consen 32 LNEELDEADIAEIIQSLEAKQIEHVVE------TSVPPPSP-RSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYN 104 (521)
T ss_pred cCcccchHHHHHHHHhhhhhccceeee------ccCCCCCC-CCCcceeeccCcceeEEecceeecceeEEEeeeeeEEe
Confidence 345566777888888887776421110 00011221 1111111223344677778742 21 2467899999
Q ss_pred CCCCceeeC--CCCCCCCCcceEEee-cceEEeecCc---------------ceEecCCcCceeec--CCCCcCccCceE
Q 016239 85 PASNSWFHL--PPAQEPRAGSCFIGA-NGFFFTTTPR---------------FGFSRILNTSWHLT--SPLRFSRINPLV 144 (392)
Q Consensus 85 ~~~~~W~~~--~~~~~~r~~~~~~~~-~g~i~v~gg~---------------~~ynp~~~~~W~~~--~~~~~~r~~~~~ 144 (392)
.+.+.|..+ +..|.||+.|.+++. .|.++++||. |.++.. +++|.++ +.-|.+|+.|-+
T Consensus 105 ~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~-trkweql~~~g~PS~RSGHRM 183 (521)
T KOG1230|consen 105 TKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK-TRKWEQLEFGGGPSPRSGHRM 183 (521)
T ss_pred ccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec-cchheeeccCCCCCCCcccee
Confidence 999999987 567788999876666 6899999982 899999 7999987 456889999999
Q ss_pred EEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCC---CCCCCCCCCCccceeeE
Q 016239 145 GVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPP---LPADFRSGYSSQYLSSA 221 (392)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~ 221 (392)
++. ..+++++||.... ..+....+++++||..+-+|+.+.+ -|.+ |.+ +...
T Consensus 184 vaw-----------------K~~lilFGGFhd~--nr~y~YyNDvy~FdLdtykW~Klepsga~Ptp-RSG-----cq~~ 238 (521)
T KOG1230|consen 184 VAW-----------------KRQLILFGGFHDS--NRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTP-RSG-----CQFS 238 (521)
T ss_pred EEe-----------------eeeEEEEcceecC--CCceEEeeeeEEEeccceeeeeccCCCCCCCC-CCc-----ceEE
Confidence 999 9999999997533 2234456799999999999999874 2444 766 5555
Q ss_pred EE-CCEEEEEeeccc--------------EEEEEECCC-----Cceeeccc--CCC-CcccceeEEeeCCeEEEEEeecC
Q 016239 222 LF-RGRFYVFGIYSF--------------SVSSFDLKK-----HVWSEVQT--LRP-PGVMFSFLIASPNMLVLAGMCNA 278 (392)
Q Consensus 222 ~~-~g~ly~~gg~~~--------------~i~~yd~~~-----~~W~~i~~--~~~-~~~~~~~~~~~~g~l~v~gg~~~ 278 (392)
+. +|.||+.||++. +++..++.+ =+|..+.+ ++| ++.++...+.-+++-+.+||...
T Consensus 239 vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D 318 (521)
T KOG1230|consen 239 VTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCD 318 (521)
T ss_pred ecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceec
Confidence 55 999999999872 678888877 25666644 233 56666666666889999998654
Q ss_pred CCC--------CceeEEEeecCccceEec
Q 016239 279 PRG--------PSFNLWKVDELSMEFSEI 299 (392)
Q Consensus 279 ~~~--------~~~~v~~~d~~~~~W~~~ 299 (392)
... --.++|-||.+.++|.+.
T Consensus 319 ~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 319 LEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ccccchhhhhhhhhhhhheecccchhhHh
Confidence 211 136788889999999865
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=7.6e-17 Score=146.26 Aligned_cols=244 Identities=18% Similarity=0.326 Sum_probs=159.7
Q ss_pred CCceeeC----CCCCCCCCcceEEeecceEEeecCc--------ceEecCCcCceeec---CCCCcCccCceEEEEEcCC
Q 016239 87 SNSWFHL----PPAQEPRAGSCFIGANGFFFTTTPR--------FGFSRILNTSWHLT---SPLRFSRINPLVGVFYDHD 151 (392)
Q Consensus 87 ~~~W~~~----~~~~~~r~~~~~~~~~g~i~v~gg~--------~~ynp~~~~~W~~~---~~~~~~r~~~~~~~~~~~~ 151 (392)
.-+|+.+ .+.|.||++|-+++...+|.++||- .+||.. +++|..- .+.|.+..
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa-tnqWf~PavrGDiPpgcA----------- 83 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA-TNQWFAPAVRGDIPPGCA----------- 83 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc-cceeecchhcCCCCCchh-----------
Confidence 3457665 4677889999999999999999872 799999 7999732 23333322
Q ss_pred CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCe--ecCC-------CCCCCCCCCCCccceeeEE
Q 016239 152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSW--ELCP-------PLPADFRSGYSSQYLSSAL 222 (392)
Q Consensus 152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W--~~~~-------~~~~~~~~~~~~~~~~~~~ 222 (392)
.|||.|++.+||+|||.-+.+.+ +-+.|......| +.+. +.|.+ |.+ |+-+.
T Consensus 84 ------A~GfvcdGtrilvFGGMvEYGkY-------sNdLYELQasRWeWkrlkp~~p~nG~pPCP-RlG-----HSFsl 144 (830)
T KOG4152|consen 84 ------AFGFVCDGTRILVFGGMVEYGKY-------SNDLYELQASRWEWKRLKPKTPKNGPPPCP-RLG-----HSFSL 144 (830)
T ss_pred ------hcceEecCceEEEEccEeeeccc-------cchHHHhhhhhhhHhhcCCCCCCCCCCCCC-ccC-----ceeEE
Confidence 34666669999999998544332 455666666554 5553 23344 777 89999
Q ss_pred ECCEEEEEeeccc--------------EEEEEECCCC----ceeecc---cCCCCcccceeEEee------CCeEEEEEe
Q 016239 223 FRGRFYVFGIYSF--------------SVSSFDLKKH----VWSEVQ---TLRPPGVMFSFLIAS------PNMLVLAGM 275 (392)
Q Consensus 223 ~~g~ly~~gg~~~--------------~i~~yd~~~~----~W~~i~---~~~~~~~~~~~~~~~------~g~l~v~gg 275 (392)
++++.|+|||..+ +++..++.-+ .|.... ..|+++..+.+ +.+ ..+++++||
T Consensus 145 ~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTA-ViY~eKDs~~skmvvyGG 223 (830)
T KOG4152|consen 145 VGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTA-VIYTEKDSKKSKMVVYGG 223 (830)
T ss_pred eccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccccee-EEEEeccCCcceEEEEcc
Confidence 9999999999752 5666665433 466532 23344444444 444 347899998
Q ss_pred ecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccc-----cC--CCC-----
Q 016239 276 CNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEY-----HK--KYP----- 343 (392)
Q Consensus 276 ~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~-----~~--~~~----- 343 (392)
..+. .-.++|.+|.++.+|.+...-.. .+-+|+-|++..+||++|||||=. +. ...
T Consensus 224 M~G~--RLgDLW~Ldl~Tl~W~kp~~~G~----------~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWk 291 (830)
T KOG4152|consen 224 MSGC--RLGDLWTLDLDTLTWNKPSLSGV----------APLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWK 291 (830)
T ss_pred cccc--cccceeEEecceeecccccccCC----------CCCCcccccceeecceeEEecceeeeeccccccccccceee
Confidence 6543 25789999999999997543100 111356789999999999999910 00 000
Q ss_pred -eEEEEe-ecCCCccceeeeecC-------CCCCcccccceEEE
Q 016239 344 -ACVCEI-GTESDKCRCSWRRLP-------QLPSPVNEFHKVIS 378 (392)
Q Consensus 344 -~~~~~~-d~~~~~~~~~W~~~~-------~~p~~~~~~~~~~~ 378 (392)
...+-+ ++.++. |..+- ..|.+|.+|+++.+
T Consensus 292 CTssl~clNldt~~----W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 292 CTSSLACLNLDTMA----WETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred eccceeeeeecchh----eeeeeeccccccccccccccceeEEe
Confidence 111234 667777 87662 36777778866654
No 27
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.64 E-value=9e-14 Score=121.77 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=129.7
Q ss_pred eecceEEeec--CcceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCccc--CCCeEEEEeceeecCcccc
Q 016239 107 GANGFFFTTT--PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFAC--NLPKFIVVGGVRFIGGLVD 182 (392)
Q Consensus 107 ~~~g~i~v~g--g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~ 182 (392)
.++|+||+.. ...++||. |++|+.+|+.+.++....... .++||+. +.+|+..+.... .
T Consensus 3 sCnGLlc~~~~~~~~V~NP~-T~~~~~LP~~~~~~~~~~~~~----------~~~G~d~~~~~YKVv~~~~~~------~ 65 (230)
T TIGR01640 3 PCDGLICFSYGKRLVVWNPS-TGQSRWLPTPKSRRSNKESDT----------YFLGYDPIEKQYKVLCFSDRS------G 65 (230)
T ss_pred ccceEEEEecCCcEEEECCC-CCCEEecCCCCCcccccccce----------EEEeecccCCcEEEEEEEeec------C
Confidence 5689998874 45899999 799999987654322111101 1234433 377888876531 0
Q ss_pred cccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeeccc-----EEEEEECCCCceee-cccCCCC
Q 016239 183 IEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSF-----SVSSFDLKKHVWSE-VQTLRPP 256 (392)
Q Consensus 183 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~-----~i~~yd~~~~~W~~-i~~~~~~ 256 (392)
......+++|++.+++|+.+...+...... ..++.++|.||++..... .|.+||+.+++|++ ++.+...
T Consensus 66 ~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~-----~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~ 140 (230)
T TIGR01640 66 NRNQSEHQVYTLGSNSWRTIECSPPHHPLK-----SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGN 140 (230)
T ss_pred CCCCccEEEEEeCCCCccccccCCCCcccc-----CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccc
Confidence 112347999999999999997433321111 237889999999975332 79999999999995 6544322
Q ss_pred c--ccceeEEeeCCeEEEEEeecCCCCCceeEEEee-cCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEE
Q 016239 257 G--VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD-ELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYV 333 (392)
Q Consensus 257 ~--~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d-~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 333 (392)
. .....+++++|+|.++..... ...++||+++ ....+|+++-.++......+.. .....++..+++|++
T Consensus 141 ~~~~~~~~L~~~~G~L~~v~~~~~--~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~------~~~~~~~~~~g~I~~ 212 (230)
T TIGR01640 141 SDSVDYLSLINYKGKLAVLKQKKD--TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVD------DNFLSGFTDKGEIVL 212 (230)
T ss_pred cccccceEEEEECCEEEEEEecCC--CCcEEEEEECCCCCCceeEEEEEcCcchhhhhh------heeEeEEeeCCEEEE
Confidence 1 224567888999998876432 1259999995 5466799877765321111111 123567788899999
Q ss_pred Eec
Q 016239 334 FNE 336 (392)
Q Consensus 334 ~gg 336 (392)
...
T Consensus 213 ~~~ 215 (230)
T TIGR01640 213 CCE 215 (230)
T ss_pred EeC
Confidence 875
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.59 E-value=1.1e-13 Score=121.19 Aligned_cols=245 Identities=16% Similarity=0.161 Sum_probs=165.2
Q ss_pred eCCCCCCCCCcceEEeecceEEeecC---c--ceEecCC-cCceeecCCCCc-CccCceEEEEEcCCCCcccccCCcccC
Q 016239 92 HLPPAQEPRAGSCFIGANGFFFTTTP---R--FGFSRIL-NTSWHLTSPLRF-SRINPLVGVFYDHDRGHCDLASGFACN 164 (392)
Q Consensus 92 ~~~~~~~~r~~~~~~~~~g~i~v~gg---~--~~ynp~~-~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (392)
.+|.+|.+-.+-+-+..++.+||.=| . +..|... ...|+.+...|- +|.....+++
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~----------------- 91 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVI----------------- 91 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheee-----------------
Confidence 45677776544444445778888644 2 5555431 359999998875 6777778888
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC-CCCCCCCCCccceeeEEECC-EEEEEeecc--------
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-PADFRSGYSSQYLSSALFRG-RFYVFGIYS-------- 234 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~-------- 234 (392)
+++||++||...... ......++++.||+.+++|+.+... |.. ..+ +.++..++ ++|++||..
T Consensus 92 ~~kLyvFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~sP~g-l~G-----~~~~~~~~~~i~f~GGvn~~if~~yf 164 (381)
T COG3055 92 GGKLYVFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTRSPTG-LVG-----ASTFSLNGTKIYFFGGVNQNIFNGYF 164 (381)
T ss_pred CCeEEEeeccccCCC-CCceEeeeeEEecCCCChhheeccccccc-ccc-----ceeEecCCceEEEEccccHHhhhhhH
Confidence 999999999854433 2234456899999999999998743 333 333 67777777 999999974
Q ss_pred -------------------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCc
Q 016239 235 -------------------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPS 283 (392)
Q Consensus 235 -------------------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~ 283 (392)
..++.||+.+++|+.....|......++++.-+++|.++.|.-..+..+
T Consensus 165 ~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt 244 (381)
T COG3055 165 EDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRT 244 (381)
T ss_pred HhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccc
Confidence 1789999999999999877765555566555677798888766666667
Q ss_pred eeEEEeec--CccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC-------------------CC
Q 016239 284 FNLWKVDE--LSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK-------------------KY 342 (392)
Q Consensus 284 ~~v~~~d~--~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~-------------------~~ 342 (392)
..+++++. ...+|..+..+|......- -+....-.--.++.+.+.||.... ..
T Consensus 245 ~~~k~~~~~~~~~~w~~l~~lp~~~~~~~------eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w 318 (381)
T COG3055 245 AEVKQADFGGDNLKWLKLSDLPAPIGSNK------EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSW 318 (381)
T ss_pred cceeEEEeccCceeeeeccCCCCCCCCCc------cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhh
Confidence 77777754 4567999988876643110 111122222466777777773221 12
Q ss_pred CeEEEEeecCCCccceeeeecCCCCCcccc
Q 016239 343 PACVCEIGTESDKCRCSWRRLPQLPSPVNE 372 (392)
Q Consensus 343 ~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~ 372 (392)
...++-+| .+. |+.+..||+++..
T Consensus 319 ~~~Vy~~d--~g~----Wk~~GeLp~~l~Y 342 (381)
T COG3055 319 NSEVYIFD--NGS----WKIVGELPQGLAY 342 (381)
T ss_pred hceEEEEc--CCc----eeeecccCCCccc
Confidence 23333334 666 9999999996554
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.57 E-value=2.5e-13 Score=119.05 Aligned_cols=256 Identities=14% Similarity=0.121 Sum_probs=169.1
Q ss_pred hhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCC--CCceeeCCCCCC-CCCcceEEeecceEEeecCc-
Q 016239 43 IISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPA--SNSWFHLPPAQE-PRAGSCFIGANGFFFTTTPR- 118 (392)
Q Consensus 43 l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~--~~~W~~~~~~~~-~r~~~~~~~~~g~i~v~gg~- 118 (392)
++..|.+.+- ......+..+|+.-|..+ ..++..|.+ ...|.++...|. +|.....+++++.||++||.
T Consensus 30 lPdlPvg~Kn---G~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~G 102 (381)
T COG3055 30 LPDLPVGFKN---GAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYG 102 (381)
T ss_pred CCCCCccccc---cccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccc
Confidence 3444554443 344455667887666443 345666655 356999988775 57777778889999999983
Q ss_pred -------------ceEecCCcCceeecCCC-CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecC------
Q 016239 119 -------------FGFSRILNTSWHLTSPL-RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIG------ 178 (392)
Q Consensus 119 -------------~~ynp~~~~~W~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~------ 178 (392)
++|||. +++|+++... |..-..+.++... +.+||++||.+..-
T Consensus 103 k~~~~~~~~~nd~Y~y~p~-~nsW~kl~t~sP~gl~G~~~~~~~----------------~~~i~f~GGvn~~if~~yf~ 165 (381)
T COG3055 103 KSVSSSPQVFNDAYRYDPS-TNSWHKLDTRSPTGLVGASTFSLN----------------GTKIYFFGGVNQNIFNGYFE 165 (381)
T ss_pred cCCCCCceEeeeeEEecCC-CChhheeccccccccccceeEecC----------------CceEEEEccccHHhhhhhHH
Confidence 899999 8999988653 4555555565651 44999999975410
Q ss_pred ------cc----------------cccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc--
Q 016239 179 ------GL----------------VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-- 234 (392)
Q Consensus 179 ------~~----------------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-- 234 (392)
.. .+......+..|++.+++|+.....|.-.+++ ++.+.-++++.++.|.-
T Consensus 166 dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG-----sa~~~~~n~~~lInGEiKp 240 (381)
T COG3055 166 DVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG-----SAVVIKGNKLTLINGEIKP 240 (381)
T ss_pred hhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC-----cceeecCCeEEEEcceecC
Confidence 00 01112346889999999999998776644554 34444466677776643
Q ss_pred ----cEEEEEEC--CCCceeecccCCCCc------ccceeEEeeCCeEEEEEeecCCC---------------C---Cce
Q 016239 235 ----FSVSSFDL--KKHVWSEVQTLRPPG------VMFSFLIASPNMLVLAGMCNAPR---------------G---PSF 284 (392)
Q Consensus 235 ----~~i~~yd~--~~~~W~~i~~~~~~~------~~~~~~~~~~g~l~v~gg~~~~~---------------~---~~~ 284 (392)
..+..+|. ...+|..+...|++. ...+..-..++.+.+.||..... . -..
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 24555555 466999987765521 11222234577888888743211 1 136
Q ss_pred eEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCC
Q 016239 285 NLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKY 342 (392)
Q Consensus 285 ~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~ 342 (392)
+||.+| .+.|+.+..||..+. ....+..++.||++||+..+..
T Consensus 321 ~Vy~~d--~g~Wk~~GeLp~~l~-------------YG~s~~~nn~vl~IGGE~~~Gk 363 (381)
T COG3055 321 EVYIFD--NGSWKIVGELPQGLA-------------YGVSLSYNNKVLLIGGETSGGK 363 (381)
T ss_pred eEEEEc--CCceeeecccCCCcc-------------ceEEEecCCcEEEEccccCCCe
Confidence 788878 789999999999742 5566688999999999876553
No 30
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.25 E-value=1.4e-09 Score=99.09 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=79.1
Q ss_pred CCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCC----C--CcccceeEEeeCCe
Q 016239 196 SDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLR----P--PGVMFSFLIASPNM 269 (392)
Q Consensus 196 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~----~--~~~~~~~~~~~~g~ 269 (392)
.+.|+.+..... ++ ...+.++|++|++.. .+.++.+|..-+ -+++.+.. . .......+|+..|+
T Consensus 189 ~~~Wt~l~~~~~--~~------~DIi~~kGkfYAvD~-~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQMGY--HF------SDIIVHKGQTYALDS-IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccCCCc--ee------eEEEEECCEEEEEcC-CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence 489999975333 32 678999999999954 367888885321 12222111 1 11233558899999
Q ss_pred EEEEEeecCC-------------CCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEE------EeCCE
Q 016239 270 LVLAGMCNAP-------------RGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCV------GLGNL 330 (392)
Q Consensus 270 l~v~gg~~~~-------------~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 330 (392)
|++|...... ....++||++|.+..+|.++.++....+ |.+... .+++. ..+|.
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aL--FlG~~~-----s~sv~a~e~pG~k~Nc 331 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAF--VMATDT-----CFSVLAHEFYGCLPNS 331 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEE--EEECCc-----cEEEecCCCCCccCCE
Confidence 9999864211 1125889999999999999999987643 554431 12221 34688
Q ss_pred EEEEec
Q 016239 331 IYVFNE 336 (392)
Q Consensus 331 i~v~gg 336 (392)
||+...
T Consensus 332 IYFtdd 337 (373)
T PLN03215 332 IYFTED 337 (373)
T ss_pred EEEECC
Confidence 888864
No 31
>PF13964 Kelch_6: Kelch motif
Probab=98.90 E-value=4e-09 Score=68.13 Aligned_cols=49 Identities=33% Similarity=0.482 Sum_probs=41.8
Q ss_pred CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCC
Q 016239 138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPAD 208 (392)
Q Consensus 138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 208 (392)
+|..++++++ +++||++||.... .....++++||+++++|+.+++||.+
T Consensus 1 pR~~~s~v~~-----------------~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVV-----------------GGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEE-----------------CCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCCCCCC
Confidence 5788999999 9999999998421 34567899999999999999999876
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.77 E-value=1.8e-08 Score=64.97 Aligned_cols=48 Identities=31% Similarity=0.539 Sum_probs=38.3
Q ss_pred cceeEEEEeCCEEEEEecccc-CCCCeEEEEeecCCCccceeeeecCCCCCcc
Q 016239 319 FASLKCVGLGNLIYVFNEEYH-KKYPACVCEIGTESDKCRCSWRRLPQLPSPV 370 (392)
Q Consensus 319 ~~~~~~~~~~~~i~v~gg~~~-~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~ 370 (392)
|.++++++.+++|||+||... ......+..+|+++++ |+.+++||.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNT----WEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCc----EEECCCCCCCC
Confidence 568999999999999999765 2333333444999999 99999999875
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.77 E-value=4.1e-09 Score=96.48 Aligned_cols=304 Identities=14% Similarity=0.113 Sum_probs=176.7
Q ss_pred cHHHHHHHHhhCChh---hHHHhhccchhhhhhhcCc----ch---hhHhhhccCCC--CCCEEEEEcccCCCCCCCcee
Q 016239 14 STDITERILSLLPIP---TLIRASSVCKSWRSIISAP----SF---SALIAHNTNAS--PRPWFFLFGLHNTSSRNNQSF 81 (392)
Q Consensus 14 p~dl~~~iL~rLP~~---~l~~~~~v~k~W~~l~~~~----~f---~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~~~~ 81 (392)
-++-.|+|+..+... ..+.-...--.|..++... .| ..+++.+..+. ...-+|++||.++...+.++|
T Consensus 212 gd~~~e~i~~~~~~~lf~q~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW 291 (723)
T KOG2437|consen 212 GDACEELIEKAVNDGLFNQYISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFW 291 (723)
T ss_pred ccHHHHHHHhhhccHHHhhhhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHH
Confidence 344445555555333 2333334446787776544 11 22222233332 344799999999999999999
Q ss_pred eeeCCCCceeeC---CCCCCCCCcceEEee--cceEEeecC---------------cceEecCCcCceeecC------CC
Q 016239 82 AFDPASNSWFHL---PPAQEPRAGSCFIGA--NGFFFTTTP---------------RFGFSRILNTSWHLTS------PL 135 (392)
Q Consensus 82 ~yd~~~~~W~~~---~~~~~~r~~~~~~~~--~g~i~v~gg---------------~~~ynp~~~~~W~~~~------~~ 135 (392)
+|+...+.|..+ +..|..|..|-++.. ..++|+.|. .|+||.. ++.|..+. .-
T Consensus 292 ~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~-~~~W~~ls~dt~~dGG 370 (723)
T KOG2437|consen 292 AYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID-TNTWMLLSEDTAADGG 370 (723)
T ss_pred hhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC-CceeEEecccccccCC
Confidence 999999999876 347788988877765 448999985 2899999 79998663 23
Q ss_pred CcCccCceEEEEEcCCCCcccccCCcccCCCe--EEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC---CC-C
Q 016239 136 RFSRINPLVGVFYDHDRGHCDLASGFACNLPK--FIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP---AD-F 209 (392)
Q Consensus 136 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~-~ 209 (392)
|..-++|.+++. +.| +||+||..... +...-...+.||.....|.....-- .+ .
T Consensus 371 P~~vfDHqM~Vd-----------------~~k~~iyVfGGr~~~~---~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vv 430 (723)
T KOG2437|consen 371 PKLVFDHQMCVD-----------------SEKHMIYVFGGRILTC---NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVV 430 (723)
T ss_pred cceeecceeeEe-----------------cCcceEEEecCeeccC---CCccccceEEEecCCccHHHHHHHHhhcCcch
Confidence 455678888888 666 99999974321 1112346889999999998775211 00 0
Q ss_pred CCCCCccceeeE--EECCEEEEEeeccc-----EEEEEECCCCceeecccCC-------CCccc--ceeEEeeCCeEEEE
Q 016239 210 RSGYSSQYLSSA--LFRGRFYVFGIYSF-----SVSSFDLKKHVWSEVQTLR-------PPGVM--FSFLIASPNMLVLA 273 (392)
Q Consensus 210 ~~~~~~~~~~~~--~~~g~ly~~gg~~~-----~i~~yd~~~~~W~~i~~~~-------~~~~~--~~~~~~~~g~l~v~ 273 (392)
....++-.+.+- .-+..+|++||... -.++||...+.=..+..-. +.+.. .+.+-....+|.+.
T Consensus 431 E~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~ 510 (723)
T KOG2437|consen 431 EDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVL 510 (723)
T ss_pred hHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhh
Confidence 011111113332 23678999999763 2356776655444432211 11111 11112224566554
Q ss_pred EeecCC-----CCCceeEEEeecCccceEecccCCHHH------HHhhcCCc-----ccCccceeEEE--EeCCEEEEEe
Q 016239 274 GMCNAP-----RGPSFNLWKVDELSMEFSEIAIMPHDF------LYSLVDTE-----EDDKFASLKCV--GLGNLIYVFN 335 (392)
Q Consensus 274 gg~~~~-----~~~~~~v~~~d~~~~~W~~~~~~p~~~------~~~~~~~~-----~~~~~~~~~~~--~~~~~i~v~g 335 (392)
-|.... .......|.|+..+++|..+..+...- +.-.++++ ...+|.+++.+ ..-+-+|.+|
T Consensus 511 ~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~G 590 (723)
T KOG2437|consen 511 SGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFG 590 (723)
T ss_pred cccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhc
Confidence 443222 123468899999999999887654332 11112211 12334454444 2445677788
Q ss_pred ccc
Q 016239 336 EEY 338 (392)
Q Consensus 336 g~~ 338 (392)
|..
T Consensus 591 gn~ 593 (723)
T KOG2437|consen 591 GNP 593 (723)
T ss_pred CCC
Confidence 743
No 34
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.75 E-value=1.2e-08 Score=64.83 Aligned_cols=43 Identities=33% Similarity=0.519 Sum_probs=38.0
Q ss_pred ccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239 10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL 52 (392)
Q Consensus 10 ~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~ 52 (392)
|..||+|++.+|++.||.+++.++..|||+|+.++.++.+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 6789999999999999999999999999999999988876665
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.70 E-value=2.3e-08 Score=63.62 Aligned_cols=47 Identities=34% Similarity=0.612 Sum_probs=39.9
Q ss_pred CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC
Q 016239 138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP 206 (392)
Q Consensus 138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 206 (392)
+|..++++++ +++||++||... ......++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~-----------------~~~iyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVV-----------------GNKIYVIGGYDG-----NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEE-----------------TTEEEEEEEBES-----TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEE-----------------CCEEEEEeeecc-----cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5788999999 999999999853 2356779999999999999998875
No 36
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.66 E-value=1.1e-08 Score=93.83 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=120.4
Q ss_pred cCceeecCCC----------CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCC
Q 016239 126 NTSWHLTSPL----------RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPH 195 (392)
Q Consensus 126 ~~~W~~~~~~----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~ 195 (392)
+.+|.++++. |..|..|.++.... ...+|+.||.+.. +...+.|+|+..
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~---------------~~CiYLYGGWdG~------~~l~DFW~Y~v~ 296 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ---------------TECVYLYGGWDGT------QDLADFWAYSVK 296 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCC---------------CcEEEEecCcccc------hhHHHHHhhcCC
Confidence 4578877653 34577888776611 5599999998533 345689999999
Q ss_pred CCCeecCC---CCCCCCCCCCCccceeeEEEC--CEEEEEeecc-----------cEEEEEECCCCceeecccC-----C
Q 016239 196 SDSWELCP---PLPADFRSGYSSQYLSSALFR--GRFYVFGIYS-----------FSVSSFDLKKHVWSEVQTL-----R 254 (392)
Q Consensus 196 ~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~-----------~~i~~yd~~~~~W~~i~~~-----~ 254 (392)
.+.|+.+. ..|.. |. +|.+|..- .+||++|-+- .++|+||..++.|..+..- .
T Consensus 297 e~~W~~iN~~t~~PG~-Rs-----CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGG 370 (723)
T KOG2437|consen 297 ENQWTCINRDTEGPGA-RS-----CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGG 370 (723)
T ss_pred cceeEEeecCCCCCcc-hh-----hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCC
Confidence 99999885 24444 43 47777654 4999998653 3799999999999987432 2
Q ss_pred CCcccceeEEeeCCe--EEEEEeecCCCC--CceeEEEeecCccceEecccCCHHHHHhhcCCcccCcccee--EEEEeC
Q 016239 255 PPGVMFSFLIASPNM--LVLAGMCNAPRG--PSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASL--KCVGLG 328 (392)
Q Consensus 255 ~~~~~~~~~~~~~g~--l~v~gg~~~~~~--~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~ 328 (392)
|.....+.|++.+++ |||+||...... ..-.+|.||.....|.....--...-.. .+....|-.+ .+...+
T Consensus 371 P~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~v---vE~~~sR~ghcmE~~~~n 447 (723)
T KOG2437|consen 371 PKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPV---VEDIQSRIGHCMEFHSKN 447 (723)
T ss_pred cceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcCCC
Confidence 345566778888777 999998644322 2356888899999998754311100000 0000012222 334567
Q ss_pred CEEEEEeccccC
Q 016239 329 NLIYVFNEEYHK 340 (392)
Q Consensus 329 ~~i~v~gg~~~~ 340 (392)
+++|++||....
T Consensus 448 ~~ly~fggq~s~ 459 (723)
T KOG2437|consen 448 RCLYVFGGQRSK 459 (723)
T ss_pred CeEEeccCcccc
Confidence 899999985433
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.59 E-value=1.6e-07 Score=59.75 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=39.9
Q ss_pred ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCC
Q 016239 258 VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303 (392)
Q Consensus 258 ~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p 303 (392)
+..+++++++++||++||..........+++||+.+++|+++++||
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 3456779999999999998875556789999999999999999987
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.50 E-value=3.2e-07 Score=58.78 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=39.2
Q ss_pred CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC
Q 016239 138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP 206 (392)
Q Consensus 138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 206 (392)
+|..|+++++ ++|||++||... ........++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~-----------------~~kiyv~GG~~~---~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVL-----------------DGKIYVFGGYGT---DNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEE-----------------CCEEEEECCccc---CCCCcccceeEEEECCCCEEeecCCCC
Confidence 5788999999 999999999811 112345668999999999999998764
No 39
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.44 E-value=5.9e-06 Score=65.14 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=66.0
Q ss_pred EEECCEEEEEeec----ccEEEEEECCCCceeecccC--CCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe-ecCc
Q 016239 221 ALFRGRFYVFGIY----SFSVSSFDLKKHVWSEVQTL--RPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV-DELS 293 (392)
Q Consensus 221 ~~~~g~ly~~gg~----~~~i~~yd~~~~~W~~i~~~--~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~-d~~~ 293 (392)
+.+||.+|+++.. ...|.+||+++++|+.+..| +........++.++|+|.++..........+++|++ |..+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 5789999999775 36899999999999999776 334555667899999999887544332346999999 5667
Q ss_pred cceEeccc-CCHHH
Q 016239 294 MEFSEIAI-MPHDF 306 (392)
Q Consensus 294 ~~W~~~~~-~p~~~ 306 (392)
.+|++... +|...
T Consensus 82 ~~Wsk~~~~lp~~~ 95 (129)
T PF08268_consen 82 QEWSKKHIVLPPSW 95 (129)
T ss_pred ceEEEEEEECChHH
Confidence 88998755 56553
No 40
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.42 E-value=1.2e-07 Score=60.49 Aligned_cols=44 Identities=34% Similarity=0.569 Sum_probs=37.7
Q ss_pred cccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239 9 AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL 52 (392)
Q Consensus 9 ~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~ 52 (392)
+|.+||+|++.+|+.+|+.+++.+++.|||+|+.++.++.+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 47899999999999999999999999999999999998876654
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.41 E-value=6.7e-07 Score=57.28 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=37.5
Q ss_pred ccceeEEeeCCeEEEEEee--cCCCCCceeEEEeecCccceEecccCC
Q 016239 258 VMFSFLIASPNMLVLAGMC--NAPRGPSFNLWKVDELSMEFSEIAIMP 303 (392)
Q Consensus 258 ~~~~~~~~~~g~l~v~gg~--~~~~~~~~~v~~~d~~~~~W~~~~~~p 303 (392)
+..+++++.+++||++||. ........++|.||+++++|++++.||
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 4456778999999999998 333344688999999999999998875
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.36 E-value=7.4e-07 Score=57.12 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=29.6
Q ss_pred CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC
Q 016239 138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP 206 (392)
Q Consensus 138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 206 (392)
+|..|+++.+. ++++|++||.+..+ ....++++||+.+++|+.++++|
T Consensus 1 pR~~h~~~~~~----------------~~~i~v~GG~~~~~-----~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIG----------------DNSIYVFGGRDSSG-----SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-----------------TTEEEEE--EEE-T-----EE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEe----------------CCeEEEECCCCCCC-----cccCCEEEEECCCCEEEECCCCC
Confidence 57888888872 58999999986432 35668999999999999998776
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.33 E-value=1.4e-06 Score=55.79 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=40.6
Q ss_pred CCEEEEEcccC--CCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEe
Q 016239 62 RPWFFLFGLHN--TSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIG 107 (392)
Q Consensus 62 ~~~l~~~gg~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 107 (392)
++.+|++||.+ ....+++++.||+.+++|++++.+|.+|.+|+++.
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 35799999988 55678999999999999999999999999998765
No 44
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.31 E-value=5.6e-07 Score=55.24 Aligned_cols=39 Identities=41% Similarity=0.657 Sum_probs=36.4
Q ss_pred CcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhh
Q 016239 13 LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSA 51 (392)
Q Consensus 13 Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~ 51 (392)
||+|++.+|+++|+.+++.+++.|||+|+.++..+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998887654
No 45
>smart00612 Kelch Kelch domain.
Probab=98.30 E-value=1.4e-06 Score=55.15 Aligned_cols=46 Identities=28% Similarity=0.564 Sum_probs=39.9
Q ss_pred EEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecc
Q 016239 65 FFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG 110 (392)
Q Consensus 65 l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 110 (392)
||++||.+......++++||+.+++|..+++|+.+|..+++++++|
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 7899998765567889999999999999999999999998887764
No 46
>smart00612 Kelch Kelch domain.
Probab=98.29 E-value=1.9e-06 Score=54.57 Aligned_cols=47 Identities=38% Similarity=0.695 Sum_probs=37.0
Q ss_pred eEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC
Q 016239 167 KFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG 225 (392)
Q Consensus 167 ~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 225 (392)
+||++||... .....++++||+.+++|+.+++|+.+ |.. ++++.++|
T Consensus 1 ~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~-----~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG------GQRLKSVEVYDPETNKWTPLPSMPTP-RSG-----HGVAVING 47 (47)
T ss_pred CEEEEeCCCC------CceeeeEEEECCCCCeEccCCCCCCc-ccc-----ceEEEeCC
Confidence 5899999731 23456899999999999999999987 765 67776654
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.25 E-value=1.4e-06 Score=55.81 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=28.5
Q ss_pred cceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCH
Q 016239 259 MFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPH 304 (392)
Q Consensus 259 ~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~ 304 (392)
..++++.. +++|||+||.........++|+||.++++|++++++|.
T Consensus 3 ~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred ceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 34555656 69999999987665556799999999999999988874
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.24 E-value=1.8e-06 Score=55.22 Aligned_cols=47 Identities=23% Similarity=0.421 Sum_probs=37.5
Q ss_pred CCEEEEEeccc--cCCCCeEEEEeecCCCccceeeeecCCCCCcccccceEEE
Q 016239 328 GNLIYVFNEEY--HKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVIS 378 (392)
Q Consensus 328 ~~~i~v~gg~~--~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 378 (392)
|++|||+||.. .......++.+|+.+++ |+.++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT----WTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCE----EEECCCCCCCccceEEEEC
Confidence 68999999976 33344445566999999 9999999999999987753
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.08 E-value=0.00019 Score=62.32 Aligned_cols=155 Identities=15% Similarity=0.258 Sum_probs=95.7
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc---cEEEEEECCC----Cceeeccc-CCCCccc
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS---FSVSSFDLKK----HVWSEVQT-LRPPGVM 259 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~i~~yd~~~----~~W~~i~~-~~~~~~~ 259 (392)
..-.||+.+++++.+......+..+ .+..-||++...||.. ..+-.|++.+ ..|.+... |...+..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSg------g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSG------GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccC------cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 4567999999999886433332322 2344589999999875 3677888865 68988765 4445554
Q ss_pred ceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239 260 FSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE 337 (392)
Q Consensus 260 ~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~ 337 (392)
......-+|+++|+||.... +.+.| ..... ....+.-+.... + ......+.+..+.-+++||+++..
T Consensus 121 pT~~~L~DG~vlIvGG~~~~---t~E~~--P~~~~~~~~~~~~~l~~~~-----~-~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNP---TYEFW--PPKGPGPGPVTLPFLSQTS-----D-TLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred ccceECCCCCEEEEeCcCCC---ccccc--CCccCCCCceeeecchhhh-----c-cCccccCceEEEcCCCCEEEEEcC
Confidence 44555569999999986521 23322 22111 111111111100 0 011125688899999999999962
Q ss_pred ccCCCCeEEEEeecCCCccceee-eecCCCCCcc
Q 016239 338 YHKKYPACVCEIGTESDKCRCSW-RRLPQLPSPV 370 (392)
Q Consensus 338 ~~~~~~~~~~~~d~~~~~~~~~W-~~~~~~p~~~ 370 (392)
.. .-+|+.+++ + +.+|.+|...
T Consensus 190 --~s-----~i~d~~~n~----v~~~lP~lPg~~ 212 (243)
T PF07250_consen 190 --GS-----IIYDYKTNT----VVRTLPDLPGGP 212 (243)
T ss_pred --Cc-----EEEeCCCCe----EEeeCCCCCCCc
Confidence 22 334888887 6 8899999764
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.93 E-value=0.00017 Score=62.60 Aligned_cols=146 Identities=15% Similarity=0.228 Sum_probs=90.7
Q ss_pred eeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc-------ceEecCC---cCceeecC-CCCcCccCceEEEEE
Q 016239 80 SFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR-------FGFSRIL---NTSWHLTS-PLRFSRINPLVGVFY 148 (392)
Q Consensus 80 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-------~~ynp~~---~~~W~~~~-~~~~~r~~~~~~~~~ 148 (392)
...||+.+++++.+......-+.-.+...+|.++++||. -.|+|.. +..|...+ .|..+|+..++..+.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457999999998775443332222233348888888874 4678762 25898775 489999999998884
Q ss_pred cCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCC-----CeecCCCCCCCCCCCCCccceeeEEE
Q 016239 149 DHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD-----SWELCPPLPADFRSGYSSQYLSSALF 223 (392)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~ 223 (392)
+++++|+||.. ..+.|.+.+... .|..+...... .......+.-+.-
T Consensus 128 ----------------DG~vlIvGG~~----------~~t~E~~P~~~~~~~~~~~~~l~~~~~~--~~~nlYP~~~llP 179 (243)
T PF07250_consen 128 ----------------DGRVLIVGGSN----------NPTYEFWPPKGPGPGPVTLPFLSQTSDT--LPNNLYPFVHLLP 179 (243)
T ss_pred ----------------CCCEEEEeCcC----------CCcccccCCccCCCCceeeecchhhhcc--CccccCceEEEcC
Confidence 88999999973 224555544221 12222211000 0001112444455
Q ss_pred CCEEEEEeecccEEEEEECCCCce-eecccCCC
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVW-SEVQTLRP 255 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W-~~i~~~~~ 255 (392)
+|+||+++... -..||..++++ +.++.+|.
T Consensus 180 dG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 180 DGNLFIFANRG--SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred CCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCC
Confidence 89999999864 45668888876 66777665
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.81 E-value=0.005 Score=53.74 Aligned_cols=163 Identities=14% Similarity=0.200 Sum_probs=95.2
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-----EEEEEeec-----ccEEEEEECCCCceeecccCCCCc
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-----RFYVFGIY-----SFSVSSFDLKKHVWSEVQTLRPPG 257 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-----~ly~~gg~-----~~~i~~yd~~~~~W~~i~~~~~~~ 257 (392)
.+.++||.|++|..+++.+.+ +..... ...+..++. |+..+... ...+.+|+..+++|+.+...++..
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~-~~~~~~-~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSR-RSNKES-DTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred cEEEECCCCCCEEecCCCCCc-cccccc-ceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCc
Confidence 688999999999999754432 111000 011222221 44444322 247889999999999987544321
Q ss_pred ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239 258 VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE 337 (392)
Q Consensus 258 ~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~ 337 (392)
.....-+.++|.||-+...... .....|..||..+++|++.-.+|.... . ......++..+|+|.++...
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~----~-----~~~~~~L~~~~G~L~~v~~~ 162 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNS----D-----SVDYLSLINYKGKLAVLKQK 162 (230)
T ss_pred cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcccc----c-----cccceEEEEECCEEEEEEec
Confidence 1111246779999887753321 112368889999999996334454321 0 01235677788999998753
Q ss_pred ccCCCCeEEEEe-ecCCCccceeeeecCCCC
Q 016239 338 YHKKYPACVCEI-GTESDKCRCSWRRLPQLP 367 (392)
Q Consensus 338 ~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~p 367 (392)
.. ...+.+... |....+ |+.+=.+|
T Consensus 163 ~~-~~~~~IWvl~d~~~~~----W~k~~~i~ 188 (230)
T TIGR01640 163 KD-TNNFDLWVLNDAGKQE----WSKLFTVP 188 (230)
T ss_pred CC-CCcEEEEEECCCCCCc----eeEEEEEc
Confidence 21 233555555 555555 98765444
No 52
>PLN02772 guanylate kinase
Probab=97.78 E-value=0.0002 Score=66.16 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=61.2
Q ss_pred cCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC---CCCCCCCCCC
Q 016239 137 FSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP---PLPADFRSGY 213 (392)
Q Consensus 137 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~ 213 (392)
.++..++++++ ++++||+||.+. .+.....+++||..+++|.... ..|.+ |.+
T Consensus 23 ~~~~~~tav~i-----------------gdk~yv~GG~~d-----~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~G- 78 (398)
T PLN02772 23 KPKNRETSVTI-----------------GDKTYVIGGNHE-----GNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKG- 78 (398)
T ss_pred CCCCcceeEEE-----------------CCEEEEEcccCC-----CccccceEEEEECCCCcEecccccCCCCCC-CCc-
Confidence 47778889999 999999999742 1124568999999999999775 55665 777
Q ss_pred CccceeeEEE-CCEEEEEeecc---cEEEEEECCCC
Q 016239 214 SSQYLSSALF-RGRFYVFGIYS---FSVSSFDLKKH 245 (392)
Q Consensus 214 ~~~~~~~~~~-~g~ly~~gg~~---~~i~~yd~~~~ 245 (392)
|+++.+ +++|+++++.. .++|.....|.
T Consensus 79 ----hSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~ 110 (398)
T PLN02772 79 ----YSAVVLNKDRILVIKKGSAPDDSIWFLEVDTP 110 (398)
T ss_pred ----ceEEEECCceEEEEeCCCCCccceEEEEcCCH
Confidence 788877 68999997543 56777766554
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.70 E-value=0.0037 Score=55.61 Aligned_cols=43 Identities=33% Similarity=0.514 Sum_probs=38.8
Q ss_pred ccCCc----HHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239 10 FTTLS----TDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL 52 (392)
Q Consensus 10 ~~~Lp----~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~ 52 (392)
++.|| +++.++||+.|...+|..+..|||+|..+++.+..++.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 45589 99999999999999999999999999999999876654
No 54
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.54 E-value=0.049 Score=47.47 Aligned_cols=210 Identities=16% Similarity=0.157 Sum_probs=111.9
Q ss_pred ceeeeeCCCCc--eeeCCCCCCCCCcce--EEeecceEEeecC---cceEecCCcC--ceeecCCCCcCccCceEEEEEc
Q 016239 79 QSFAFDPASNS--WFHLPPAQEPRAGSC--FIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFSRINPLVGVFYD 149 (392)
Q Consensus 79 ~~~~yd~~~~~--W~~~~~~~~~r~~~~--~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~r~~~~~~~~~~ 149 (392)
.+.++|+.+++ |.. .+..+..... .+..++.+|+..+ .+.+|+. ++ .|+.-. +.+-... ....
T Consensus 4 ~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~-tG~~~W~~~~--~~~~~~~-~~~~-- 75 (238)
T PF13360_consen 4 TLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK-TGKVLWRFDL--PGPISGA-PVVD-- 75 (238)
T ss_dssp EEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT-TSEEEEEEEC--SSCGGSG-EEEE--
T ss_pred EEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC-CCCEEEEeec--cccccce-eeec--
Confidence 45677776555 544 1111122222 3336888888743 4889986 45 666433 2211111 3444
Q ss_pred CCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eec-CCCCCCC-CCCCCCccceeeEEECC
Q 016239 150 HDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WEL-CPPLPAD-FRSGYSSQYLSSALFRG 225 (392)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~-~~~~~~~-~~~~~~~~~~~~~~~~g 225 (392)
++.+|+.... ..+..+|..+++ |+. ....+.. .... ......++
T Consensus 76 ---------------~~~v~v~~~~------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-----~~~~~~~~ 123 (238)
T PF13360_consen 76 ---------------GGRVYVGTSD------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSS-----SSPAVDGD 123 (238)
T ss_dssp ---------------TTEEEEEETT------------SEEEEEETTTSCEEEEEEE-SSCTCSTB-------SEEEEETT
T ss_pred ---------------ccccccccce------------eeeEecccCCcceeeeeccccccccccccc-----cCceEecC
Confidence 7888888632 168888876664 883 4322211 1221 33444456
Q ss_pred EEEEEeecccEEEEEECCCC--ceeecccCCCCcc-------cceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc-
Q 016239 226 RFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGV-------MFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME- 295 (392)
Q Consensus 226 ~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~-------~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~- 295 (392)
.+|+.. ..+.|.++|++++ .|+.-...+.... .....+..++.+|+..... .+..+|..+.+
T Consensus 124 ~~~~~~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~ 195 (238)
T PF13360_consen 124 RLYVGT-SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEK 195 (238)
T ss_dssp EEEEEE-TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEE
T ss_pred EEEEEe-ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCCE
Confidence 665554 3678999998876 5666433332111 1233445577788776432 14455776665
Q ss_pred -eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeee
Q 016239 296 -FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWR 361 (392)
Q Consensus 296 -W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~ 361 (392)
|+. . +... .......++.||+... ++ .++-+|+++++ ..|+
T Consensus 196 ~w~~-~-~~~~---------------~~~~~~~~~~l~~~~~--~~----~l~~~d~~tG~--~~W~ 237 (238)
T PF13360_consen 196 LWSK-P-ISGI---------------YSLPSVDGGTLYVTSS--DG----RLYALDLKTGK--VVWQ 237 (238)
T ss_dssp EEEE-C-SS-E---------------CECEECCCTEEEEEET--TT----EEEEEETTTTE--EEEE
T ss_pred EEEe-c-CCCc---------------cCCceeeCCEEEEEeC--CC----EEEEEECCCCC--EEeE
Confidence 733 2 2221 2225678888888872 11 12344888877 5675
No 55
>PF13854 Kelch_5: Kelch motif
Probab=97.52 E-value=0.00023 Score=43.64 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=32.3
Q ss_pred CCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCC
Q 016239 135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHS 196 (392)
Q Consensus 135 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~ 196 (392)
+|.+|..|+++++ +++||++||... ......+++++||..+
T Consensus 1 ~P~~R~~hs~~~~-----------------~~~iyi~GG~~~----~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-----------------GNNIYIFGGYSG----NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-----------------CCEEEEEcCccC----CCCCEECcEEEEECCC
Confidence 4788999999999 999999999852 1233456899998765
No 56
>PLN02772 guanylate kinase
Probab=97.45 E-value=0.0008 Score=62.25 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=52.9
Q ss_pred eeeEEECCEEEEEeecc------cEEEEEECCCCceeecc---cCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239 218 LSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQ---TLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK 288 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~---~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~ 288 (392)
++++.+++++|++||.. ..+++||..+.+|..-. ..|.++-++.+++.-+++|+|+++.... .-++|-
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---~~~~w~ 104 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---DDSIWF 104 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---ccceEE
Confidence 78999999999999854 47999999999998854 2333455555555558999999854332 456776
Q ss_pred eecCc
Q 016239 289 VDELS 293 (392)
Q Consensus 289 ~d~~~ 293 (392)
+..++
T Consensus 105 l~~~t 109 (398)
T PLN02772 105 LEVDT 109 (398)
T ss_pred EEcCC
Confidence 65443
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00012 Score=64.08 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=43.4
Q ss_pred CCCCCcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239 4 HNPYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL 52 (392)
Q Consensus 4 ~~~~~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~ 52 (392)
-+|.-.|..|||||++.|++.||.+++++...|||+|..+..+.+.+.+
T Consensus 92 ~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 92 NNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 4566679999999999999999999999999999999999988765544
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.36 E-value=0.095 Score=49.81 Aligned_cols=191 Identities=13% Similarity=0.034 Sum_probs=102.8
Q ss_pred CceeeeeCCCCc--eeeCCCCCC--CCCcceEEeecceEEeecC---cceEecCCcC--ceeecCCCCcC-----c---c
Q 016239 78 NQSFAFDPASNS--WFHLPPAQE--PRAGSCFIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFS-----R---I 140 (392)
Q Consensus 78 ~~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~-----r---~ 140 (392)
..++++|+++.+ |..-...+. .+...+-+..++.+|+..+ .+.+|+. ++ .|+.-...+.. | .
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc-CChhhheeccccCCCccchhccccc
Confidence 457889988776 755322221 1111223344667776543 3567776 44 57642111111 0 1
Q ss_pred CceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccce
Q 016239 141 NPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYL 218 (392)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~ 218 (392)
..+-++. ++.+|+.+.. ..+..+|..+++ |+.-. ... .
T Consensus 249 ~~sP~v~-----------------~~~vy~~~~~------------g~l~ald~~tG~~~W~~~~--~~~---------~ 288 (394)
T PRK11138 249 DTTPVVV-----------------GGVVYALAYN------------GNLVALDLRSGQIVWKREY--GSV---------N 288 (394)
T ss_pred CCCcEEE-----------------CCEEEEEEcC------------CeEEEEECCCCCEEEeecC--CCc---------c
Confidence 1122334 7788876532 157788887764 87531 111 2
Q ss_pred eeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc-
Q 016239 219 SSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME- 295 (392)
Q Consensus 219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~- 295 (392)
..+..++.+|+... .+.++++|..++ .|+.-.. . .......+..+|+||+... .-.++.+|..+.+
T Consensus 289 ~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~--~-~~~~~sp~v~~g~l~v~~~-------~G~l~~ld~~tG~~ 357 (394)
T PRK11138 289 DFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDL--L-HRLLTAPVLYNGYLVVGDS-------EGYLHWINREDGRF 357 (394)
T ss_pred CcEEECCEEEEEcC-CCeEEEEECCCCcEEEccccc--C-CCcccCCEEECCEEEEEeC-------CCEEEEEECCCCCE
Confidence 34667899998764 568999999876 4754211 1 1122233557899887542 2346667776654
Q ss_pred -eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239 296 -FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN 335 (392)
Q Consensus 296 -W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 335 (392)
|+.- ++... ...+-++.+++|||-.
T Consensus 358 ~~~~~--~~~~~-------------~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 358 VAQQK--VDSSG-------------FLSEPVVADDKLLIQA 383 (394)
T ss_pred EEEEE--cCCCc-------------ceeCCEEECCEEEEEe
Confidence 5431 11110 1223456788888875
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.32 E-value=0.13 Score=48.87 Aligned_cols=226 Identities=13% Similarity=0.098 Sum_probs=123.5
Q ss_pred CCCCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCC--------CCCCcceEEeecceEEeecC---cceEecCC
Q 016239 59 ASPRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQ--------EPRAGSCFIGANGFFFTTTP---RFGFSRIL 125 (392)
Q Consensus 59 ~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~--------~~r~~~~~~~~~g~i~v~gg---~~~ynp~~ 125 (392)
+..++.+|+.... ..+.++|..+++ |+.-..-. .++...+.+..++.||+.+. .+.+|..
T Consensus 66 vv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~- 138 (394)
T PRK11138 66 AVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAE- 138 (394)
T ss_pred EEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECC-
Confidence 4456677776432 457889987655 76421110 01112235666889988643 4788987
Q ss_pred cC--ceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eec
Q 016239 126 NT--SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WEL 201 (392)
Q Consensus 126 ~~--~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~ 201 (392)
++ .|+.-.+ .. ...+-++. ++.+|+..+. ..+..+|.++++ |+.
T Consensus 139 tG~~~W~~~~~--~~-~~ssP~v~-----------------~~~v~v~~~~------------g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 139 DGEVAWQTKVA--GE-ALSRPVVS-----------------DGLVLVHTSN------------GMLQALNESDGAVKWTV 186 (394)
T ss_pred CCCCcccccCC--Cc-eecCCEEE-----------------CCEEEEECCC------------CEEEEEEccCCCEeeee
Confidence 44 7864322 11 11122344 7778875432 158888987765 876
Q ss_pred CCCCCCC-CCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcc-------cceeEEeeCCeEE
Q 016239 202 CPPLPAD-FRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGV-------MFSFLIASPNMLV 271 (392)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~-------~~~~~~~~~g~l~ 271 (392)
-...+.. .+.. .+.+..++.+|+.. ..+.+.++|..+. .|+.-...+.... ....-++.++.||
T Consensus 187 ~~~~~~~~~~~~-----~sP~v~~~~v~~~~-~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy 260 (394)
T PRK11138 187 NLDVPSLTLRGE-----SAPATAFGGAIVGG-DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY 260 (394)
T ss_pred cCCCCcccccCC-----CCCEEECCEEEEEc-CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE
Confidence 5432211 0111 34556677777654 4578999998876 5764321111000 1122345688888
Q ss_pred EEEeecCCCCCceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe
Q 016239 272 LAGMCNAPRGPSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI 349 (392)
Q Consensus 272 v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~ 349 (392)
+.+. ...++.+|..+. .|+.- ... ....+..+++||+... + .. ++-+
T Consensus 261 ~~~~-------~g~l~ald~~tG~~~W~~~--~~~----------------~~~~~~~~~~vy~~~~--~--g~--l~al 309 (394)
T PRK11138 261 ALAY-------NGNLVALDLRSGQIVWKRE--YGS----------------VNDFAVDGGRIYLVDQ--N--DR--VYAL 309 (394)
T ss_pred EEEc-------CCeEEEEECCCCCEEEeec--CCC----------------ccCcEEECCEEEEEcC--C--Ce--EEEE
Confidence 8663 235677787654 48752 110 1134567899999763 1 11 2333
Q ss_pred ecCCCccceeeee
Q 016239 350 GTESDKCRCSWRR 362 (392)
Q Consensus 350 d~~~~~~~~~W~~ 362 (392)
|.++++ ..|+.
T Consensus 310 d~~tG~--~~W~~ 320 (394)
T PRK11138 310 DTRGGV--ELWSQ 320 (394)
T ss_pred ECCCCc--EEEcc
Confidence 666554 45864
No 60
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.13 E-value=0.23 Score=46.27 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=84.4
Q ss_pred EEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEE-C-CEEEEEeecccEEEEEECC--CCceeecc---cCCC--C
Q 016239 188 AVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALF-R-GRFYVFGIYSFSVSSFDLK--KHVWSEVQ---TLRP--P 256 (392)
Q Consensus 188 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~-~-g~ly~~gg~~~~i~~yd~~--~~~W~~i~---~~~~--~ 256 (392)
.+.+|+...+. .+....+..+.-.+ ....++. + ..+|+....++.|.+|+.. +.+++.+. ..+. .
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSS----EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSC
T ss_pred EEEEEEEeCCCceEEEeeccccccCCC----CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccc
Confidence 67777776655 54432221111111 1233333 3 4799999888888888776 66666543 2222 1
Q ss_pred cc-cceeEEee-CC-eEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEE
Q 016239 257 GV-MFSFLIAS-PN-MLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYV 333 (392)
Q Consensus 257 ~~-~~~~~~~~-~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 333 (392)
.. ..+.+... +| .||+.... ..++.++.+|..+.+-+.+...+... +. +| ++++...|+.||+
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~d~~~g~l~~~~~~~~~G-------~~--Pr-~~~~s~~g~~l~V 308 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRG----SNSISVFDLDPATGTLTLVQTVPTGG-------KF--PR-HFAFSPDGRYLYV 308 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEECTTTTTEEEEEEEEESS-------SS--EE-EEEE-TTSSEEEE
T ss_pred ccCCceeEEEecCCCEEEEEecc----CCEEEEEEEecCCCceEEEEEEeCCC-------CC--cc-EEEEeCCCCEEEE
Confidence 11 22333333 45 45665432 22788888877777777766655421 00 01 4444447777887
Q ss_pred EeccccCCCCeEEEEeecCCCccceeeeecC
Q 016239 334 FNEEYHKKYPACVCEIGTESDKCRCSWRRLP 364 (392)
Q Consensus 334 ~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 364 (392)
.+. ....+.++++|.+++. +..+.
T Consensus 309 a~~---~s~~v~vf~~d~~tG~----l~~~~ 332 (345)
T PF10282_consen 309 ANQ---DSNTVSVFDIDPDTGK----LTPVG 332 (345)
T ss_dssp EET---TTTEEEEEEEETTTTE----EEEEE
T ss_pred Eec---CCCeEEEEEEeCCCCc----EEEec
Confidence 763 4456777888999998 77765
No 61
>PF13854 Kelch_5: Kelch motif
Probab=97.13 E-value=0.001 Score=40.72 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=28.4
Q ss_pred cccceeEEeeCCeEEEEEeecC-CCCCceeEEEeecCc
Q 016239 257 GVMFSFLIASPNMLVLAGMCNA-PRGPSFNLWKVDELS 293 (392)
Q Consensus 257 ~~~~~~~~~~~g~l~v~gg~~~-~~~~~~~v~~~d~~~ 293 (392)
.+..++++..+++||++||... ......++|+||..+
T Consensus 4 ~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 4 PRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4556666888999999999874 444568999999764
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.08 E-value=0.15 Score=50.19 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=39.6
Q ss_pred CcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239 8 SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL 52 (392)
Q Consensus 8 ~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~ 52 (392)
.-+..||.|+...||..|+.++++.++.||+.|+.+........+
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 456779999999999999999999999999999999987765543
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.05 E-value=0.022 Score=52.81 Aligned_cols=129 Identities=13% Similarity=0.108 Sum_probs=79.0
Q ss_pred ECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCC------ceeEEEeec-----
Q 016239 223 FRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGP------SFNLWKVDE----- 291 (392)
Q Consensus 223 ~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~------~~~v~~~d~----- 291 (392)
.+.+|+.++.. +.+..||+++..-...+.+.. .......+.++++||++......... ..++..|+.
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~l~~-pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~ 152 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPRLHS-PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDP 152 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEeccCCCCC-CCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccc
Confidence 57888888665 568999999998776666544 23344567779999999864333111 556666652
Q ss_pred ---CccceEecccCCHHHHHhhcCCcccCccceeEEEEe-CCEEEEEe-ccccCCCCeEEEEeecCCCccceeeeecCC-
Q 016239 292 ---LSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL-GNLIYVFN-EEYHKKYPACVCEIGTESDKCRCSWRRLPQ- 365 (392)
Q Consensus 292 ---~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~g-g~~~~~~~~~~~~~d~~~~~~~~~W~~~~~- 365 (392)
....|+.++..|-... .....+...+-+++ |..|||.- +.. ..+|-+|.++.+ |+.++.
T Consensus 153 ~~~~~w~W~~LP~PPf~~~------~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~----W~~~GdW 217 (342)
T PF07893_consen 153 SPEESWSWRSLPPPPFVRD------RRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHE----WRKHGDW 217 (342)
T ss_pred cCCCcceEEcCCCCCcccc------CCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcc----eeeccce
Confidence 2335777666442211 00000013344455 88999943 311 335777998888 999976
Q ss_pred -CCC
Q 016239 366 -LPS 368 (392)
Q Consensus 366 -~p~ 368 (392)
||+
T Consensus 218 ~LPF 221 (342)
T PF07893_consen 218 MLPF 221 (342)
T ss_pred ecCc
Confidence 665
No 64
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=97.03 E-value=0.0056 Score=50.32 Aligned_cols=82 Identities=11% Similarity=0.170 Sum_probs=55.5
Q ss_pred eEEECCEEEEEeeccc-----EEEEEECCCCce-eecccCCCCc--ccceeE-EeeCCeEEEEEeecCCCCCceeEEEee
Q 016239 220 SALFRGRFYVFGIYSF-----SVSSFDLKKHVW-SEVQTLRPPG--VMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVD 290 (392)
Q Consensus 220 ~~~~~g~ly~~gg~~~-----~i~~yd~~~~~W-~~i~~~~~~~--~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d 290 (392)
+|.+||.+|+++.... .|.+||+.++++ ..++.|.... .....+ ++.+++|.++-... ....++||+++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~--~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD--ETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc--CCccEEEEEEe
Confidence 3788999999986542 699999999999 5554443322 223334 33478898875322 22359999997
Q ss_pred c---CccceEecccCC
Q 016239 291 E---LSMEFSEIAIMP 303 (392)
Q Consensus 291 ~---~~~~W~~~~~~p 303 (392)
. ...+|+++-.++
T Consensus 79 ~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 79 KYGYGKESWTKLFTID 94 (164)
T ss_pred eeccCcceEEEEEEEe
Confidence 3 367899987654
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.94 E-value=0.03 Score=51.95 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=75.9
Q ss_pred ecceEEeec---CcceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc-
Q 016239 108 ANGFFFTTT---PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI- 183 (392)
Q Consensus 108 ~~g~i~v~g---g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~- 183 (392)
.+.+|+.++ ...+||+. +..-...|.++.+.....++.+ +++||++..........+.
T Consensus 75 ~gskIv~~d~~~~t~vyDt~-t~av~~~P~l~~pk~~pisv~V-----------------G~~LY~m~~~~~~~~~~~~~ 136 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTD-TRAVATGPRLHSPKRCPISVSV-----------------GDKLYAMDRSPFPEPAGRPD 136 (342)
T ss_pred cCCeEEEEcCCCCeEEEECC-CCeEeccCCCCCCCcceEEEEe-----------------CCeEEEeeccCccccccCcc
Confidence 488888884 46899998 6777777888877777666677 8889999765321110000
Q ss_pred ccceEEEEEeC--------CCCCeecCCCCCCCCCCCCCc--cceeeEEE-CCEEEEE-eecccEEEEEECCCCceeecc
Q 016239 184 EDRLAVEIYDP--------HSDSWELCPPLPADFRSGYSS--QYLSSALF-RGRFYVF-GIYSFSVSSFDLKKHVWSEVQ 251 (392)
Q Consensus 184 ~~~~~~~~yd~--------~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~-~g~ly~~-gg~~~~i~~yd~~~~~W~~i~ 251 (392)
....++..|+. ..-.|+.+++.|.. ...... .-.+-+++ +..|++- .+.....++||+.+.+|+.+.
T Consensus 137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~-~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 137 FPCFEALVYRPPPDDPSPEESWSWRSLPPPPFV-RDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred ceeEEEeccccccccccCCCcceEEcCCCCCcc-ccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 00223444442 23367787764433 221000 02334455 5578873 332235899999999999985
Q ss_pred c
Q 016239 252 T 252 (392)
Q Consensus 252 ~ 252 (392)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 5
No 66
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.73 E-value=0.48 Score=43.72 Aligned_cols=122 Identities=15% Similarity=0.077 Sum_probs=69.3
Q ss_pred CEEEEEeecccEEEEEECC--CCceeec---ccCCC---CcccceeEE-eeCCe-EEEEEeecCCCCCceeEEEeecCcc
Q 016239 225 GRFYVFGIYSFSVSSFDLK--KHVWSEV---QTLRP---PGVMFSFLI-ASPNM-LVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~--~~~W~~i---~~~~~---~~~~~~~~~-~~~g~-l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
..+|+.....+.|.+||.. +++.+.+ ...+. .......+. .-+++ ||+... ....+.+|.++..+.
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR----TASLISVFSVSEDGS 262 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC----CCCeEEEEEEeCCCC
Confidence 3688887767889888886 3454443 22222 111111122 23554 565422 122688887777666
Q ss_pred ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCC
Q 016239 295 EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPS 368 (392)
Q Consensus 295 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~ 368 (392)
.++.+...+.... ++ .+.+...|..||+.+. ....+.++++|.+++. +..+..++.
T Consensus 263 ~~~~~~~~~~~~~----------p~-~~~~~~dg~~l~va~~---~~~~v~v~~~~~~~g~----l~~~~~~~~ 318 (330)
T PRK11028 263 VLSFEGHQPTETQ----------PR-GFNIDHSGKYLIAAGQ---KSHHISVYEIDGETGL----LTELGRYAV 318 (330)
T ss_pred eEEEeEEEecccc----------CC-ceEECCCCCEEEEEEc---cCCcEEEEEEcCCCCc----EEEcccccc
Confidence 6766665543310 01 3444456778888763 3456777777877877 777776654
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.61 E-value=0.65 Score=43.76 Aligned_cols=192 Identities=16% Similarity=0.113 Sum_probs=98.6
Q ss_pred CceeeeeCCCCc--eeeCCCCCC--CCCcceEEeecceEEeec---CcceEecCCcC--ceeecCCCCcCc--------c
Q 016239 78 NQSFAFDPASNS--WFHLPPAQE--PRAGSCFIGANGFFFTTT---PRFGFSRILNT--SWHLTSPLRFSR--------I 140 (392)
Q Consensus 78 ~~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~g~i~v~g---g~~~ynp~~~~--~W~~~~~~~~~r--------~ 140 (392)
..+.++|+++.+ |..-...+. .+...+.+..++.+|+.. ....+|+. ++ .|+.--..+... .
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~~ 233 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQ-TGQPLWEQRVALPKGRTELERLVDV 233 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEcc-CCCEeeeeccccCCCCCchhhhhcc
Confidence 347788887654 654222111 111223344466666542 24678886 44 575322111111 1
Q ss_pred CceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccce
Q 016239 141 NPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYL 218 (392)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~ 218 (392)
..+.++. ++.+|+.... ..+..||..+++ |+.-. .. ..
T Consensus 234 ~~~p~~~-----------------~~~vy~~~~~------------g~l~a~d~~tG~~~W~~~~--~~---------~~ 273 (377)
T TIGR03300 234 DGDPVVD-----------------GGQVYAVSYQ------------GRVAALDLRSGRVLWKRDA--SS---------YQ 273 (377)
T ss_pred CCccEEE-----------------CCEEEEEEcC------------CEEEEEECCCCcEEEeecc--CC---------cc
Confidence 1122233 6778876432 157888887654 76531 11 13
Q ss_pred eeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc-
Q 016239 219 SSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME- 295 (392)
Q Consensus 219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~- 295 (392)
..+..++.+|+... .+.++++|..++ .|+.-. +. .......+..++.||+... ...++.+|..+.+
T Consensus 274 ~p~~~~~~vyv~~~-~G~l~~~d~~tG~~~W~~~~-~~--~~~~ssp~i~g~~l~~~~~-------~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 274 GPAVDDNRLYVTDA-DGVVVALDRRSGSELWKNDE-LK--YRQLTAPAVVGGYLVVGDF-------EGYLHWLSREDGSF 342 (377)
T ss_pred CceEeCCEEEEECC-CCeEEEEECCCCcEEEcccc-cc--CCccccCEEECCEEEEEeC-------CCEEEEEECCCCCE
Confidence 44567889998753 568999999765 576521 11 1112223446777877542 2345566765443
Q ss_pred -eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239 296 -FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE 336 (392)
Q Consensus 296 -W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg 336 (392)
|+. . ++... ...+-+..+++||+.+.
T Consensus 343 ~~~~-~-~~~~~-------------~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 343 VARL-K-TDGSG-------------IASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEEE-E-cCCCc-------------cccCCEEECCEEEEEeC
Confidence 532 1 11110 12344577788887763
No 68
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.61 E-value=0.34 Score=45.11 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=65.0
Q ss_pred eeeEEE-C-CEEEEEeecccEEEEEECCCCc--eeecccC-CCCcccceeEEee-C-CeEEEEEeecCCCCCceeEEEee
Q 016239 218 LSSALF-R-GRFYVFGIYSFSVSSFDLKKHV--WSEVQTL-RPPGVMFSFLIAS-P-NMLVLAGMCNAPRGPSFNLWKVD 290 (392)
Q Consensus 218 ~~~~~~-~-g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~-~~~~~~~~~~~~~-~-g~l~v~gg~~~~~~~~~~v~~~d 290 (392)
|.+... + ..+|+..-..+.|..|+...+. ....... .+.+..-..++.. + ..+|++.... ..+.++.++
T Consensus 147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s----~~v~v~~~~ 222 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS----NTVSVFDYD 222 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT----TEEEEEEEE
T ss_pred eeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC----CcEEEEeec
Confidence 454444 3 3577765445789999887765 5443221 1112222222333 3 4678876322 267888888
Q ss_pred cCccceEecc---cCCHHHHHhhcCCcccCccceeEEEEe--CCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239 291 ELSMEFSEIA---IMPHDFLYSLVDTEEDDKFASLKCVGL--GNLIYVFNEEYHKKYPACVCEIGTESDK 355 (392)
Q Consensus 291 ~~~~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~gg~~~~~~~~~~~~~d~~~~~ 355 (392)
..+..++.+. .+|.. +-+. .....+... |..||+... +...+.++++|.++++
T Consensus 223 ~~~g~~~~~~~~~~~~~~----~~~~-----~~~~~i~ispdg~~lyvsnr---~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEG----FTGE-----NAPAEIAISPDGRFLYVSNR---GSNSISVFDLDPATGT 280 (345)
T ss_dssp TTTTEEEEEEEEESCETT----SCSS-----SSEEEEEE-TTSSEEEEEEC---TTTEEEEEEECTTTTT
T ss_pred ccCCceeEEEEeeecccc----cccc-----CCceeEEEecCCCEEEEEec---cCCEEEEEEEecCCCc
Confidence 6566666554 45442 1111 123444444 678888774 3566777888777666
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.57 E-value=0.47 Score=41.68 Aligned_cols=187 Identities=15% Similarity=0.041 Sum_probs=99.3
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC--cceEecCCcCceeecCCCCcCc--cCceEEEEEcCC
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP--RFGFSRILNTSWHLTSPLRFSR--INPLVGVFYDHD 151 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg--~~~ynp~~~~~W~~~~~~~~~r--~~~~~~~~~~~~ 151 (392)
.+++.+++.++.-....... ..+++.. +|.+|+... ..++|+. +++++.+...+... .....-+..++
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~~~~d~~-~g~~~~~~~~~~~~~~~~~~ND~~vd~- 95 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGGIAVVDPD-TGKVTVLADLPDGGVPFNRPNDVAVDP- 95 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTCEEEEETT-TTEEEEEEEEETTCSCTEEEEEEEE-T-
T ss_pred CEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCceEEEecC-CCcEEEEeeccCCCcccCCCceEEEcC-
Confidence 57899999887764432222 2344443 788887743 4677998 78888776653211 11111122222
Q ss_pred CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC-CCCCCCCCCCCccceeeEEE-CC-EEE
Q 016239 152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP-PLPADFRSGYSSQYLSSALF-RG-RFY 228 (392)
Q Consensus 152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~-~g-~ly 228 (392)
++.+|+---..... .......++.+++. ++.+.+. .+..+ .+.+.. ++ .||
T Consensus 96 -------------~G~ly~t~~~~~~~---~~~~~g~v~~~~~~-~~~~~~~~~~~~p---------NGi~~s~dg~~ly 149 (246)
T PF08450_consen 96 -------------DGNLYVTDSGGGGA---SGIDPGSVYRIDPD-GKVTVVADGLGFP---------NGIAFSPDGKTLY 149 (246)
T ss_dssp -------------TS-EEEEEECCBCT---TCGGSEEEEEEETT-SEEEEEEEEESSE---------EEEEEETTSSEEE
T ss_pred -------------CCCEEEEecCCCcc---ccccccceEEECCC-CeEEEEecCcccc---------cceEECCcchhee
Confidence 66788753221000 00011578899987 5555543 22221 233333 34 688
Q ss_pred EEeecccEEEEEECCCCc--eee---cccCCCCc-ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239 229 VFGIYSFSVSSFDLKKHV--WSE---VQTLRPPG-VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM 302 (392)
Q Consensus 229 ~~gg~~~~i~~yd~~~~~--W~~---i~~~~~~~-~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~ 302 (392)
+.-...+.|++||+.... +.. +..++... .-....+..+|+||+.... ...|++||++...-..+. +
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i~-~ 222 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREIE-L 222 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEEE--
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEEc-C
Confidence 887777899999996543 332 21222211 1122234458999987542 457888899866544443 4
Q ss_pred C
Q 016239 303 P 303 (392)
Q Consensus 303 p 303 (392)
|
T Consensus 223 p 223 (246)
T PF08450_consen 223 P 223 (246)
T ss_dssp S
T ss_pred C
Confidence 4
No 70
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.46 E-value=0.52 Score=40.93 Aligned_cols=184 Identities=16% Similarity=0.217 Sum_probs=99.5
Q ss_pred CCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCCCCCCcceEEeecceEEeecC---cceEecCCcC--cee-ec
Q 016239 61 PRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQEPRAGSCFIGANGFFFTTTP---RFGFSRILNT--SWH-LT 132 (392)
Q Consensus 61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~g~i~v~gg---~~~ynp~~~~--~W~-~~ 132 (392)
.++.+|+..+ ...+.++|+.+.+ |..- ++.+.. ......++.+|+... .+.+|.. ++ .|+ ..
T Consensus 35 ~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~--~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASG------DGNLYALDAKTGKVLWRFD--LPGPIS-GAPVVDGGRVYVGTSDGSLYALDAK-TGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEET------TSEEEEEETTTSEEEEEEE--CSSCGG-SGEEEETTEEEEEETTSEEEEEETT-TSCEEEEEEE
T ss_pred eCCEEEEEcC------CCEEEEEECCCCCEEEEee--cccccc-ceeeecccccccccceeeeEecccC-Ccceeeeecc
Confidence 5667777632 2678999997776 5432 222211 224666888887742 4788966 44 787 34
Q ss_pred CCCCcC--ccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCC
Q 016239 133 SPLRFS--RINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPAD 208 (392)
Q Consensus 133 ~~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~ 208 (392)
...+.. .......+. ++.+|+.... ..+..+|+.+++ |+.....+..
T Consensus 105 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~------------g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVD-----------------GDRLYVGTSS------------GKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp -SSCTCSTB--SEEEEE-----------------TTEEEEEETC------------SEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccccccCceEe-----------------cCEEEEEecc------------CcEEEEecCCCcEEEEeecCCCCC
Confidence 332222 223334444 6667666521 158889988764 7764433321
Q ss_pred CCCC---CCccceeeEEECCEEEEEeecccEEEEEECCCCc--eeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCc
Q 016239 209 FRSG---YSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHV--WSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPS 283 (392)
Q Consensus 209 ~~~~---~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~ 283 (392)
... ........+..++.+|+..+... +..+|..+++ |+.. ... ........++.||+.. . .
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~---~~~~~~~~~~~l~~~~-~------~ 221 (238)
T PF13360_consen 156 -SSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISG---IYSLPSVDGGTLYVTS-S------D 221 (238)
T ss_dssp -S--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEEEEEC--SS----ECECEECCCTEEEEEE-T------T
T ss_pred -CcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCCCEEEEec--CCC---ccCCceeeCCEEEEEe-C------C
Confidence 110 00011333444688888876544 6667999987 7332 111 1222355577777765 2 2
Q ss_pred eeEEEeecCccc--eE
Q 016239 284 FNLWKVDELSME--FS 297 (392)
Q Consensus 284 ~~v~~~d~~~~~--W~ 297 (392)
..++.+|..+.+ |+
T Consensus 222 ~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 222 GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCCEEeE
Confidence 355566776654 65
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.27 E-value=1 Score=42.37 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=106.7
Q ss_pred CCCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCCCCCCcceEEeecceEEeecC---cceEecCCcC--ceeec
Q 016239 60 SPRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQEPRAGSCFIGANGFFFTTTP---RFGFSRILNT--SWHLT 132 (392)
Q Consensus 60 ~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~ 132 (392)
..++.+|+.... ..++++|+.+++ |..-.. .. ...+.+..++.+|+.+. ++.+|+. ++ .|+.-
T Consensus 63 v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~ 132 (377)
T TIGR03300 63 VAGGKVYAADAD------GTVVALDAETGKRLWRVDLD--ER-LSGGVGADGGLVFVGTEKGEVIALDAE-DGKELWRAK 132 (377)
T ss_pred EECCEEEEECCC------CeEEEEEccCCcEeeeecCC--CC-cccceEEcCCEEEEEcCCCEEEEEECC-CCcEeeeec
Confidence 345666665331 458899987665 653211 11 11234455788887643 4788986 44 67643
Q ss_pred CCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCC--CeecCCCCCC-CC
Q 016239 133 SPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD--SWELCPPLPA-DF 209 (392)
Q Consensus 133 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~-~~ 209 (392)
.. ... ....++. ++++|+..+. ..+..+|..++ .|+.-...+. ..
T Consensus 133 ~~--~~~-~~~p~v~-----------------~~~v~v~~~~------------g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 133 LS--SEV-LSPPLVA-----------------NGLVVVRTND------------GRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cC--cee-ecCCEEE-----------------CCEEEEECCC------------CeEEEEEcCCCceeeEEccCCCceee
Confidence 21 110 1112233 6677775432 15788888765 4775432221 11
Q ss_pred CCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCc-------ccceeEEeeCCeEEEEEeecCCC
Q 016239 210 RSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPG-------VMFSFLIASPNMLVLAGMCNAPR 280 (392)
Q Consensus 210 ~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~-------~~~~~~~~~~g~l~v~gg~~~~~ 280 (392)
+.. .+.+..++.+| ++...+.+.++|+.++ .|+.-...+... ......+..++.+|+...
T Consensus 181 ~~~-----~sp~~~~~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----- 249 (377)
T TIGR03300 181 RGS-----ASPVIADGGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----- 249 (377)
T ss_pred cCC-----CCCEEECCEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-----
Confidence 111 34556677665 4555578999998776 575432111100 011223445788887653
Q ss_pred CCceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239 281 GPSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN 335 (392)
Q Consensus 281 ~~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 335 (392)
...++.+|.++. .|+.-. + .....+..+++||+..
T Consensus 250 --~g~l~a~d~~tG~~~W~~~~--~----------------~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 250 --QGRVAALDLRSGRVLWKRDA--S----------------SYQGPAVDDNRLYVTD 286 (377)
T ss_pred --CCEEEEEECCCCcEEEeecc--C----------------CccCceEeCCEEEEEC
Confidence 234666676544 476421 0 0223346788998875
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.63 E-value=0.13 Score=45.12 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=89.2
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK 244 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~ 244 (392)
++.+|..-|. ...+.+..||+.+++=....++|.. -++ -+.+.++++||.+.=..+..+.||..+
T Consensus 55 ~g~LyESTG~---------yG~S~l~~~d~~tg~~~~~~~l~~~-~Fg-----EGit~~~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 55 DGTLYESTGL---------YGQSSLRKVDLETGKVLQSVPLPPR-YFG-----EGITILGDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp TTEEEEEECS---------TTEEEEEEEETTTSSEEEEEE-TTT---E-----EEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred CCEEEEeCCC---------CCcEEEEEEECCCCcEEEEEECCcc-ccc-----eeEEEECCEEEEEEecCCeEEEEcccc
Confidence 7788887775 1345799999999886666667665 444 567788999999998888999999975
Q ss_pred CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEE
Q 016239 245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKC 324 (392)
Q Consensus 245 ~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 324 (392)
++.+...+-. ...-.++..+.+|++..| +..++.+|+.+-+ .+..+....- .. +. ..--..
T Consensus 120 --l~~~~~~~y~-~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~--~~~~i~V~~~-----g~-pv-~~LNEL 180 (264)
T PF05096_consen 120 --LKKIGTFPYP-GEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFK--EVRTIQVTDN-----GR-PV-SNLNEL 180 (264)
T ss_dssp --TEEEEEEE-S-SS--EEEECSSCEEEE-S-------SSEEEEE-TTT-S--EEEEEE-EET-----TE-E----EEEE
T ss_pred --ceEEEEEecC-CcceEEEcCCCEEEEECC-------ccceEEECCcccc--eEEEEEEEEC-----CE-EC-CCcEeE
Confidence 4555443322 234456767778888766 4567777887532 2222211100 00 00 012234
Q ss_pred EEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239 325 VGLGNLIYVFNEEYHKKYPACVCEIGTESDK 355 (392)
Q Consensus 325 ~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~ 355 (392)
-.++++||.--- .+..++.+||++++
T Consensus 181 E~i~G~IyANVW-----~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 181 EYINGKIYANVW-----QTDRIVRIDPETGK 206 (264)
T ss_dssp EEETTEEEEEET-----TSSEEEEEETTT-B
T ss_pred EEEcCEEEEEeC-----CCCeEEEEeCCCCe
Confidence 456777776442 23345667888887
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.15 E-value=0.8 Score=42.81 Aligned_cols=162 Identities=8% Similarity=0.010 Sum_probs=94.8
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~~~i~~yd~~ 243 (392)
..-+.+++|.+ ....++.-|-+++. .+.++... ++. -..+...-+|. ..+++|....++.||+.
T Consensus 224 ~~plllvaG~d---------~~lrifqvDGk~N~--~lqS~~l~-~fP---i~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLD---------GTLRIFQVDGKVNP--KLQSIHLE-KFP---IQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCC---------CcEEEEEecCccCh--hheeeeec-cCc---cceeeecCCCceEEEecccceEEEEeecc
Confidence 55677787773 23344444554544 44443332 221 00122223666 77788888899999999
Q ss_pred CCceeecccCCCCc--ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccce
Q 016239 244 KHVWSEVQTLRPPG--VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFAS 321 (392)
Q Consensus 244 ~~~W~~i~~~~~~~--~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~ 321 (392)
+.+.+.+.++.... .....-|..++.++++.|. ...|..+...+++|----.++... ..
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~------~G~I~lLhakT~eli~s~KieG~v-------------~~ 349 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN------NGHIHLLHAKTKELITSFKIEGVV-------------SD 349 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEccc------CceEEeehhhhhhhhheeeeccEE-------------ee
Confidence 99988887654411 2222235556666666554 335566677788775433444432 24
Q ss_pred eEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCC
Q 016239 322 LKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQL 366 (392)
Q Consensus 322 ~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~ 366 (392)
+.+...+..|+++||.. .++..|..++.|.+.|..-+.+
T Consensus 350 ~~fsSdsk~l~~~~~~G------eV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTG------EVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred EEEecCCcEEEEEcCCc------eEEEEecCCcceEEEEeecCcc
Confidence 55556667777777621 2344588888888889876654
No 74
>smart00284 OLF Olfactomedin-like domains.
Probab=94.93 E-value=2.4 Score=37.23 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=90.4
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeC----CCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDP----HSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSF 240 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~y 240 (392)
++++|++.+.. .....+..|.. ..+.+...-.+|.++. + .+.++.||.||.--..+..|..|
T Consensus 34 ~~~~wv~~~~~--------~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~-G-----tG~VVYngslYY~~~~s~~iiKy 99 (255)
T smart00284 34 KSLYWYMPLNT--------RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQ-G-----TGVVVYNGSLYFNKFNSHDICRF 99 (255)
T ss_pred CceEEEEcccc--------CCCcEEEEecCHHHHhccCCceEEECCCccc-c-----ccEEEECceEEEEecCCccEEEE
Confidence 46788875541 01224555543 2334433334555422 2 67889999999988778899999
Q ss_pred ECCCCceeecccCCCC-----------cccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc----eEecccCCHH
Q 016239 241 DLKKHVWSEVQTLRPP-----------GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME----FSEIAIMPHD 305 (392)
Q Consensus 241 d~~~~~W~~i~~~~~~-----------~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~----W~~~~~~p~~ 305 (392)
|+.+++-.....+|.. +....-+++-.+-|+++=....+ ...+.|=++|+.+.+ |.. ..+.
T Consensus 100 dL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-~g~ivvSkLnp~tL~ve~tW~T--~~~k- 175 (255)
T smart00284 100 DLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-AGKIVISKLNPATLTIENTWIT--TYNK- 175 (255)
T ss_pred ECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-CCCEEEEeeCcccceEEEEEEc--CCCc-
Confidence 9999976544333321 11112245556667665322221 125666677776543 543 2222
Q ss_pred HHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239 306 FLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK 355 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~ 355 (392)
+....++.+-|.||++.. .........+-+|..+++
T Consensus 176 -------------~sa~naFmvCGvLY~~~s-~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 176 -------------RSASNAFMICGILYVTRS-LGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred -------------ccccccEEEeeEEEEEcc-CCCCCcEEEEEEECCCCc
Confidence 234577788899999864 222333334555887766
No 75
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.50 E-value=1.6 Score=38.50 Aligned_cols=106 Identities=14% Similarity=0.297 Sum_probs=59.8
Q ss_pred eecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCC
Q 016239 130 HLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADF 209 (392)
Q Consensus 130 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 209 (392)
..+...|.+|+.|++.++.... +...+++||...... .+ -.|..|..+-+.|.
T Consensus 79 eLvGdvP~aRYGHt~~vV~SrG-------------Kta~VlFGGRSY~P~---------~q---RTTenWNsVvDC~P-- 131 (337)
T PF03089_consen 79 ELVGDVPEARYGHTINVVHSRG-------------KTACVLFGGRSYMPP---------GQ---RTTENWNSVVDCPP-- 131 (337)
T ss_pred eecCCCCcccccceEEEEEECC-------------cEEEEEECCcccCCc---------cc---cchhhcceeccCCC--
Confidence 3568899999999999886542 456777888732111 00 12456766654333
Q ss_pred CCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceee--cccCCCCcccceeEEeeCCeEEEEEeecCC-CCCceeE
Q 016239 210 RSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSE--VQTLRPPGVMFSFLIASPNMLVLAGMCNAP-RGPSFNL 286 (392)
Q Consensus 210 ~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~--i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~-~~~~~~v 286 (392)
.+|++ |++-+-.+. ++.+. .+..++...+-++.+|++||..-. +...-.+
T Consensus 132 ----------------~VfLi----------DleFGC~tah~lpEl~-dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l 184 (337)
T PF03089_consen 132 ----------------QVFLI----------DLEFGCCTAHTLPELQ-DGQSFHVSLARNDCVYILGGHSLESDSRPPRL 184 (337)
T ss_pred ----------------eEEEE----------eccccccccccchhhc-CCeEEEEEEecCceEEEEccEEccCCCCCCcE
Confidence 23333 333322222 22222 466677767779999999985432 2223455
Q ss_pred EEe
Q 016239 287 WKV 289 (392)
Q Consensus 287 ~~~ 289 (392)
+++
T Consensus 185 ~rl 187 (337)
T PF03089_consen 185 YRL 187 (337)
T ss_pred EEE
Confidence 554
No 76
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.47 E-value=0.61 Score=41.76 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=64.8
Q ss_pred cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC-----CHHHHHh
Q 016239 235 FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM-----PHDFLYS 309 (392)
Q Consensus 235 ~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~-----p~~~~~~ 309 (392)
..|..||+.+.+|.....-.. +........-+++||+.|-..-.......+-.||.++.+|+.+..- |...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~-G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv--- 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGIS-GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV--- 91 (281)
T ss_pred CEEEEEECCCCEeecCCCCce-EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE---
Confidence 578999999999999865422 2222222234788888885433332356666779999999887762 3221
Q ss_pred hcCCcccCccceeEEEE-eCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCC
Q 016239 310 LVDTEEDDKFASLKCVG-LGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQ 365 (392)
Q Consensus 310 ~~~~~~~~~~~~~~~~~-~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~ 365 (392)
....... .++.+++.|.. ......+..+| ..+ |+.+..
T Consensus 92 ----------~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~----W~~i~~ 130 (281)
T PF12768_consen 92 ----------TALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSS----WSSIGS 130 (281)
T ss_pred ----------EEEEeeccCCceEEEecee--cCCCceEEEEc--CCc----eEeccc
Confidence 1222222 44567777754 22333444453 234 988876
No 77
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.44 E-value=0.78 Score=41.11 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=64.5
Q ss_pred cceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeec------ccEEEEEECCCCceeecccCC---
Q 016239 185 DRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIY------SFSVSSFDLKKHVWSEVQTLR--- 254 (392)
Q Consensus 185 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~------~~~i~~yd~~~~~W~~i~~~~--- 254 (392)
.+..+-.||..+.+|..+..--.. . -...... +++||+.|-. ...+..||.++.+|+.+....
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G-~------V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ 86 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG-T------VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNS 86 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE-E------EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccccc
Confidence 356788999999999998743111 1 1233333 6778887743 247899999999999986632
Q ss_pred CCcccceeEEe---eCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239 255 PPGVMFSFLIA---SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 255 ~~~~~~~~~~~---~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
.++.. .++.. -.+++++.|.. ... ...+..|| ..+|..+..
T Consensus 87 ipgpv-~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPV-TALTFISNDGSNFWVAGRS-ANG--STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCCcE-EEEEeeccCCceEEEecee-cCC--CceEEEEc--CCceEeccc
Confidence 11111 22222 34567887764 222 34455555 558998876
No 78
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.41 E-value=0.025 Score=50.07 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=38.0
Q ss_pred ccCCcHHHHHHHHhhC-----ChhhHHHhhccchhhhhhhcCcchhhH
Q 016239 10 FTTLSTDITERILSLL-----PIPTLIRASSVCKSWRSIISAPSFSAL 52 (392)
Q Consensus 10 ~~~Lp~dl~~~iL~rL-----P~~~l~~~~~v~k~W~~l~~~~~f~~~ 52 (392)
+.-||+|++.+||.++ .+.++.++.+|||.|..+...|+++..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 3679999999998654 568999999999999999999998876
No 79
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.19 E-value=4.3 Score=36.87 Aligned_cols=200 Identities=13% Similarity=0.141 Sum_probs=84.6
Q ss_pred eeeeeCCCCceeeCCC-CCCCCCcceEEee-cceEEeecCc-ceEecC-CcCceeecCCCCcCccCceEEEEEcCCCCcc
Q 016239 80 SFAFDPASNSWFHLPP-AQEPRAGSCFIGA-NGFFFTTTPR-FGFSRI-LNTSWHLTSPLRFSRINPLVGVFYDHDRGHC 155 (392)
Q Consensus 80 ~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~g~i~v~gg~-~~ynp~-~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~ 155 (392)
++.-.-...+|.+++. .+.|-..+.+... ++.+.+.+.. -+|-.. -..+|+.+..-... .-..+... .
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~--~----- 154 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSG-SINDITRS--S----- 154 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S-----EEEEEE---T-----
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcc-eeEeEEEC--C-----
Confidence 3444446778998753 2333333444443 4455554432 223221 14599876432221 11111111 1
Q ss_pred cccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeecc
Q 016239 156 DLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYS 234 (392)
Q Consensus 156 ~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~ 234 (392)
++++++++... . -....|+....|+...-.-.. |. .++.+. ++.|++++ ..
T Consensus 155 ---------dG~~vavs~~G--------~---~~~s~~~G~~~w~~~~r~~~~-ri------q~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 155 ---------DGRYVAVSSRG--------N---FYSSWDPGQTTWQPHNRNSSR-RI------QSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp ---------TS-EEEEETTS--------S---EEEEE-TT-SS-EEEE--SSS--E------EEEEE-TTS-EEEEE-TT
T ss_pred ---------CCcEEEEECcc--------c---EEEEecCCCccceEEccCccc-ee------hhceecCCCCEEEEe-CC
Confidence 66766666430 1 233557777889887533222 32 333333 56777765 44
Q ss_pred cEEEEEE--CCCCceeecccCCC-CcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc---CCHHHH
Q 016239 235 FSVSSFD--LKKHVWSEVQTLRP-PGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI---MPHDFL 307 (392)
Q Consensus 235 ~~i~~yd--~~~~~W~~i~~~~~-~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~---~p~~~~ 307 (392)
+.|..=| -..++|++-..+.. .......++ .-+++++++||.. .+++=.-..++|++... .|..++
T Consensus 207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~l~~S~DgGktW~~~~~~~~~~~n~~ 279 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------TLLVSTDGGKTWQKDRVGENVPSNLY 279 (302)
T ss_dssp TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--------EEEESSTTSS-EE-GGGTTSSS---
T ss_pred cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-------cEEEeCCCCccceECccccCCCCceE
Confidence 5565555 45668888433222 222222223 2368899998742 44444556788998754 454432
Q ss_pred HhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239 308 YSLVDTEEDDKFASLKCVGLGNLIYVFNE 336 (392)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~i~v~gg 336 (392)
. -.+...++-|++|.
T Consensus 280 -------------~-i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 280 -------------R-IVFVNPDKGFVLGQ 294 (302)
T ss_dssp -------------E-EEEEETTEEEEE-S
T ss_pred -------------E-EEEcCCCceEEECC
Confidence 2 23346689999984
No 80
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.03 E-value=4.9 Score=36.98 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.4
Q ss_pred CEEEEEeecccEEEEEECCC
Q 016239 225 GRFYVFGIYSFSVSSFDLKK 244 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~ 244 (392)
..+|+..-..+.|..||+.+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CEEEEeeCCCCEEEEEEECC
Confidence 36777766668999999976
No 81
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.97 E-value=4.1 Score=35.90 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=92.2
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCC-----CCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPH-----SDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSS 239 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~ 239 (392)
+.++|++.+.. ...+..|... .+.....-.+|.++. + .+.++.||.+|.--..+..|..
T Consensus 30 ~~~iy~~~~~~----------~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~-G-----tG~vVYngslYY~~~~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGFS----------GNTVYEYRNYEDFLRNGRSSRTYKLPYPWQ-G-----TGHVVYNGSLYYNKYNSRNIVK 93 (250)
T ss_pred CCCEEEECccC----------CCEEEEEcCHhHHhhcCCCceEEEEeceec-c-----CCeEEECCcEEEEecCCceEEE
Confidence 77899998762 1145555432 233333334554422 2 5678899999999888889999
Q ss_pred EECCCCcee---ecccCCC--------CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc----ceEecccCCH
Q 016239 240 FDLKKHVWS---EVQTLRP--------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM----EFSEIAIMPH 304 (392)
Q Consensus 240 yd~~~~~W~---~i~~~~~--------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~----~W~~~~~~p~ 304 (392)
||+.+++-. .++.... .+....-+++-+.-|+++=...... ..+.|=++|+.+. +|.. ..+.
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T--~~~k 170 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNT--SYPK 170 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEe--ccCc
Confidence 999998655 3322111 1111122455567777765433322 1466667777654 4652 3333
Q ss_pred HHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239 305 DFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK 355 (392)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~ 355 (392)
. ....++.+-|.||++....... ....+-+|..+++
T Consensus 171 ~--------------~~~naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~ 206 (250)
T PF02191_consen 171 R--------------SAGNAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGK 206 (250)
T ss_pred h--------------hhcceeeEeeEEEEEEECCCCC-cEEEEEEECCCCc
Confidence 3 2446778889999998643322 3444445888877
No 82
>PRK13684 Ycf48-like protein; Provisional
Probab=93.93 E-value=5.2 Score=37.06 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=59.8
Q ss_pred eCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEE-C-CCCceeecccCCC-CcccceeEE-eeC
Q 016239 193 DPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFD-L-KKHVWSEVQTLRP-PGVMFSFLI-ASP 267 (392)
Q Consensus 193 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd-~-~~~~W~~i~~~~~-~~~~~~~~~-~~~ 267 (392)
|....+|+.+...... .. ...+. -++.++++|.. +.+ .+. . .-.+|+.+..+.. .......+. ..+
T Consensus 200 ~~gg~tW~~~~~~~~~-~l------~~i~~~~~g~~~~vg~~-G~~-~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 200 EPGQTAWTPHQRNSSR-RL------QSMGFQPDGNLWMLARG-GQI-RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred CCCCCeEEEeeCCCcc-cc------eeeeEcCCCCEEEEecC-CEE-EEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 4445679888542221 11 23333 36788887653 433 342 2 3358997644322 122222223 337
Q ss_pred CeEEEEEeecCCCCCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239 268 NMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE 336 (392)
Q Consensus 268 g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg 336 (392)
+.++++|.. -.++.-.....+|+.+.. +|.. ....+...++++|+.|.
T Consensus 271 ~~~~~~G~~-------G~v~~S~d~G~tW~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 271 GEIWAGGGN-------GTLLVSKDGGKTWEKDPVGEEVPSN--------------FYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCEEEEcCC-------CeEEEeCCCCCCCeECCcCCCCCcc--------------eEEEEEeCCCceEEECC
Confidence 788888742 223333445678998753 3322 13344456888888884
No 83
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.40 E-value=1.6 Score=38.36 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=85.2
Q ss_pred CCEEEEEeecc-cEEEEEECCCC-----ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239 224 RGRFYVFGIYS-FSVSSFDLKKH-----VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297 (392)
Q Consensus 224 ~g~ly~~gg~~-~~i~~yd~~~~-----~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~ 297 (392)
++++|++.+.. +.|..|...+. .....-.+|- .......++.+|.||.--. .+..|-+||..++.=.
T Consensus 30 ~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~-~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~ 102 (250)
T PF02191_consen 30 SEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPY-PWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVV 102 (250)
T ss_pred CCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEec-eeccCCeEEECCcEEEEec------CCceEEEEECcCCcEE
Confidence 46788887765 45666643222 2222222222 2334456889999987543 1567788898888755
Q ss_pred ecccCCHHHHH--hhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCCcccccce
Q 016239 298 EIAIMPHDFLY--SLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHK 375 (392)
Q Consensus 298 ~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~ 375 (392)
....+|..... ..+. ..+....-+++.++=|+++=......+.+.+-.+|+++-.-++.|.. .++ +...+-
T Consensus 103 ~~~~L~~A~~~n~~~y~---~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~--k~~~~n 175 (250)
T PF02191_consen 103 ARRELPGAGYNNRFPYY---WSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYP--KRSAGN 175 (250)
T ss_pred EEEECCcccccccccee---cCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccC--chhhcc
Confidence 44456655432 0110 11234577778888888876544444456666669988887888997 344 344555
Q ss_pred EEEeec
Q 016239 376 VISFCS 381 (392)
Q Consensus 376 ~~~~~~ 381 (392)
+++.|+
T Consensus 176 aFmvCG 181 (250)
T PF02191_consen 176 AFMVCG 181 (250)
T ss_pred eeeEee
Confidence 566665
No 84
>smart00284 OLF Olfactomedin-like domains.
Probab=93.35 E-value=2.6 Score=37.04 Aligned_cols=146 Identities=8% Similarity=0.069 Sum_probs=83.6
Q ss_pred CCEEEEEeec---ccEEEEEEC----CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239 224 RGRFYVFGIY---SFSVSSFDL----KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEF 296 (392)
Q Consensus 224 ~g~ly~~gg~---~~~i~~yd~----~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W 296 (392)
++++|++.+. ...+..|.. ........-.+|- .......++.+|.||.--.. +..|-+||..+++-
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~-~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPH-AGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCC-ccccccEEEECceEEEEecC------CccEEEEECCCCcE
Confidence 5788888664 246666643 3333333222222 33445568999999984421 45677889988876
Q ss_pred EecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCCcccccceE
Q 016239 297 SEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKV 376 (392)
Q Consensus 297 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~~ 376 (392)
.....+|...++.-+.- .-.+....-+++.++=|+++=......+.+.+-.+||.+-+-+..|.. .+| +...+-+
T Consensus 107 ~~~~~Lp~a~y~~~~~Y-~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~--k~sa~na 181 (255)
T smart00284 107 QKEPLLNGAGYNNRFPY-AWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYN--KRSASNA 181 (255)
T ss_pred EEEEecCcccccccccc-ccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCC--ccccccc
Confidence 55555665432211100 000123466777777777763333334555555679988777778998 444 4444555
Q ss_pred EEeec
Q 016239 377 ISFCS 381 (392)
Q Consensus 377 ~~~~~ 381 (392)
++-|+
T Consensus 182 FmvCG 186 (255)
T smart00284 182 FMICG 186 (255)
T ss_pred EEEee
Confidence 56665
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.35 E-value=1 Score=42.37 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=67.2
Q ss_pred EEEEEeCCCCCeec-CCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCC--CcccceeEE
Q 016239 188 AVEIYDPHSDSWEL-CPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP--PGVMFSFLI 264 (392)
Q Consensus 188 ~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~--~~~~~~~~~ 264 (392)
.+.+|+..+..=.. ++.+ +.. .+....-.+|+|...|+.++.|-.||.++.. .+..+.. .+.......
T Consensus 49 rvqly~~~~~~~~k~~srF----k~~---v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--iLR~~~ah~apv~~~~f~ 119 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRF----KDV---VYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--ILRQLYAHQAPVHVTKFS 119 (487)
T ss_pred EEEEEecchhhhhhhHHhh----ccc---eeEEEeecCCeEEEccCCcCcEEEeccccHH--HHHHHhhccCceeEEEec
Confidence 68899877654322 2222 211 0112222379999999999999999965521 1111111 111111223
Q ss_pred eeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC
Q 016239 265 ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK 341 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~ 341 (392)
..++.+++.|..+. ...+| |..+.. .+..-....= .-...++...++.|++.|| |++.
T Consensus 120 ~~d~t~l~s~sDd~----v~k~~--d~s~a~-v~~~l~~htD-----------YVR~g~~~~~~~hivvtGs-YDg~ 177 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK----VVKYW--DLSTAY-VQAELSGHTD-----------YVRCGDISPANDHIVVTGS-YDGK 177 (487)
T ss_pred ccCCeEEEecCCCc----eEEEE--EcCCcE-EEEEecCCcc-----------eeEeeccccCCCeEEEecC-CCce
Confidence 45888888886543 57788 444443 2222211111 1124556667788888887 5443
No 86
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.10 E-value=3.5 Score=37.83 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=76.8
Q ss_pred eEEEEEeCCCC-----CeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCc-eeecccCCCCcccc
Q 016239 187 LAVEIYDPHSD-----SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHV-WSEVQTLRPPGVMF 260 (392)
Q Consensus 187 ~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~-W~~i~~~~~~~~~~ 260 (392)
..+.+|+.... +.+.+...... .. -.+.+.++|+|.+.-| +.|..|+....+ +......... ...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~-g~-----V~ai~~~~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~-~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK-GP-----VTAICSFNGRLVVAVG--NKLYVYDLDNSKTLLKKAFYDSP-FYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES-S------EEEEEEETTEEEEEET--TEEEEEEEETTSSEEEEEEE-BS-SSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec-Cc-----ceEhhhhCCEEEEeec--CEEEEEEccCcccchhhheecce-EEE
Confidence 56888888774 45555322221 11 2566677898655555 588899988887 7666554332 234
Q ss_pred eeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEe-CCEEEEEecccc
Q 016239 261 SFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL-GNLIYVFNEEYH 339 (392)
Q Consensus 261 ~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~gg~~~ 339 (392)
..+.+.++.|++..-. .++.++.|+.+..+-..++.-... +...++..+ ++. .++++ +
T Consensus 133 ~sl~~~~~~I~vgD~~-----~sv~~~~~~~~~~~l~~va~d~~~-------------~~v~~~~~l~d~~-~~i~~--D 191 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAM-----KSVSLLRYDEENNKLILVARDYQP-------------RWVTAAEFLVDED-TIIVG--D 191 (321)
T ss_dssp EEEEEETTEEEEEESS-----SSEEEEEEETTTE-EEEEEEESS--------------BEEEEEEEE-SSS-EEEEE--E
T ss_pred EEEeccccEEEEEEcc-----cCEEEEEEEccCCEEEEEEecCCC-------------ccEEEEEEecCCc-EEEEE--c
Confidence 4456667766654322 278888899877767777664433 234455554 545 44443 2
Q ss_pred CCCCeEEEEeec
Q 016239 340 KKYPACVCEIGT 351 (392)
Q Consensus 340 ~~~~~~~~~~d~ 351 (392)
..+.+.++++++
T Consensus 192 ~~gnl~~l~~~~ 203 (321)
T PF03178_consen 192 KDGNLFVLRYNP 203 (321)
T ss_dssp TTSEEEEEEE-S
T ss_pred CCCeEEEEEECC
Confidence 345555666644
No 87
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.05 E-value=6.2 Score=35.13 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=45.4
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~~~i~~yd~~ 243 (392)
+..+|+.++. ...+.+||..+++.... ++...... .....-++ .+|+.++..+.+..||+.
T Consensus 42 g~~l~~~~~~-----------~~~v~~~d~~~~~~~~~--~~~~~~~~-----~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 42 GKLLYVCASD-----------SDTIQVIDLATGEVIGT--LPSGPDPE-----LFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred CCEEEEEECC-----------CCeEEEEECCCCcEEEe--ccCCCCcc-----EEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 4456776643 12588899887665331 11110110 11122233 577776666789999998
Q ss_pred CCceeecccCCCCcccceeEEeeCCeEEEEEe
Q 016239 244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGM 275 (392)
Q Consensus 244 ~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg 275 (392)
+.+- +...+............+|++++++.
T Consensus 104 ~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 104 TRKV--LAEIPVGVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred CCeE--EeEeeCCCCcceEEECCCCCEEEEEe
Confidence 7542 21111111111222334777777664
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.72 E-value=4.3 Score=38.31 Aligned_cols=67 Identities=24% Similarity=0.229 Sum_probs=40.5
Q ss_pred eeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEE-EEeecCCCCCceeEEEeecCcc
Q 016239 219 SSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVL-AGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v-~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
+....++.|.+.||+++.|-.||+.+.+ ..+............+..-+|.+++ .||. ++.|| |..+.
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn------~vkVW--Dl~~G 227 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGN------SVKVW--DLTTG 227 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCC------eEEEE--EecCC
Confidence 3344578899999999999999998884 3332322211112223333545554 4442 78999 76543
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.65 E-value=5.5 Score=37.49 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=85.2
Q ss_pred EEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcc--eEEeecce-EEeecCc----ceEecCCcCceeecCCCCc
Q 016239 65 FFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGS--CFIGANGF-FFTTTPR----FGFSRILNTSWHLTSPLRF 137 (392)
Q Consensus 65 l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~~g~-i~v~gg~----~~ynp~~~~~W~~~~~~~~ 137 (392)
+++.+|.+.. ..++..|-+.|. .+..+...+... +....+|. ..+++|. +.||.. +.+-.++.++..
T Consensus 227 lllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~~~~~g 300 (514)
T KOG2055|consen 227 LLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKLKPPYG 300 (514)
T ss_pred eEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceEEEEeecc-ccccccccCCCC
Confidence 4444454432 456666666655 333333222111 11122444 5555553 789998 677777765532
Q ss_pred --CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCc
Q 016239 138 --SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSS 215 (392)
Q Consensus 138 --~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 215 (392)
.+......+.. .+.++++.|.. ..+.+....|+.|-.--.++...+
T Consensus 301 ~e~~~~e~FeVSh----------------d~~fia~~G~~-----------G~I~lLhakT~eli~s~KieG~v~----- 348 (514)
T KOG2055|consen 301 VEEKSMERFEVSH----------------DSNFIAIAGNN-----------GHIHLLHAKTKELITSFKIEGVVS----- 348 (514)
T ss_pred cccchhheeEecC----------------CCCeEEEcccC-----------ceEEeehhhhhhhhheeeeccEEe-----
Confidence 12222222221 34455555541 146666777777654333333211
Q ss_pred cceeeEEECC-EEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 216 QYLSSALFRG-RFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 216 ~~~~~~~~~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
...-..++ +|++.||. +.|+.+|+..+.-...-.-...-.+.+.....++.++..|...+ -+.||.+
T Consensus 349 --~~~fsSdsk~l~~~~~~-GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G----iVNIYd~ 416 (514)
T KOG2055|consen 349 --DFTFSSDSKELLASGGT-GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG----IVNIYDG 416 (514)
T ss_pred --eEEEecCCcEEEEEcCC-ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc----eEEEecc
Confidence 11111244 56666665 58999999888322211111111122222345777666654322 4666633
No 90
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.50 E-value=3 Score=36.75 Aligned_cols=93 Identities=13% Similarity=-0.007 Sum_probs=63.0
Q ss_pred ECCEEEEEeeccc--EEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 223 FRGRFYVFGIYSF--SVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 223 ~~g~ly~~gg~~~--~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
.+|.||.-.|.-+ .|..||+.+++-.....++. ....-.++..+++||.+... +...++||.++ .+++.
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t--l~~~~ 124 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWK------EGTGFVYDPNT--LKKIG 124 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESS------SSEEEEEETTT--TEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEec------CCeEEEEcccc--ceEEE
Confidence 4789999987654 78999999998666555555 44555678999999999753 34667789864 56666
Q ss_pred cCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239 301 IMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE 337 (392)
Q Consensus 301 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~ 337 (392)
+.+... -..+.+..++.|++..|.
T Consensus 125 ~~~y~~-------------EGWGLt~dg~~Li~SDGS 148 (264)
T PF05096_consen 125 TFPYPG-------------EGWGLTSDGKRLIMSDGS 148 (264)
T ss_dssp EEE-SS-------------S--EEEECSSCEEEE-SS
T ss_pred EEecCC-------------cceEEEcCCCEEEEECCc
Confidence 554331 156777888888888873
No 91
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.47 E-value=10 Score=36.06 Aligned_cols=114 Identities=11% Similarity=-0.010 Sum_probs=59.5
Q ss_pred EeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC-----ceeecccCCCCcccceeE-Ee
Q 016239 192 YDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH-----VWSEVQTLRPPGVMFSFL-IA 265 (392)
Q Consensus 192 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~-----~W~~i~~~~~~~~~~~~~-~~ 265 (392)
.|.....|+.+...... +.. ......++.++++|.. +.++.-+-.-. +|.++..... +.....+ ..
T Consensus 265 ~d~G~~~W~~~~~~~~~-~l~-----~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~~~~-~~~l~~v~~~ 336 (398)
T PLN00033 265 WEPGQPYWQPHNRASAR-RIQ-----NMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFDFEEADIKSR-GFGILDVGYR 336 (398)
T ss_pred cCCCCcceEEecCCCcc-cee-----eeeEcCCCCEEEEeCC-ceEEEecCCCCcccccceeecccCCC-CcceEEEEEc
Confidence 34444458988633222 221 2222347888887754 34444333334 3454433211 2222222 33
Q ss_pred eCCeEEEEEeecCCCCCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccceeEEE-EeCCEEEEEe
Q 016239 266 SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFASLKCV-GLGNLIYVFN 335 (392)
Q Consensus 266 ~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~g 335 (392)
.++.++++|.. -.+++-....++|+.... ++..+ +.+. ..+++.|+.|
T Consensus 337 ~d~~~~a~G~~-------G~v~~s~D~G~tW~~~~~~~~~~~~l---------------y~v~f~~~~~g~~~G 388 (398)
T PLN00033 337 SKKEAWAAGGS-------GILLRSTDGGKSWKRDKGADNIAANL---------------YSVKFFDDKKGFVLG 388 (398)
T ss_pred CCCcEEEEECC-------CcEEEeCCCCcceeEccccCCCCcce---------------eEEEEcCCCceEEEe
Confidence 47788888852 234444667789998753 33332 2444 4558899888
No 92
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.00 E-value=12 Score=36.13 Aligned_cols=103 Identities=10% Similarity=-0.055 Sum_probs=56.4
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeec--ccEEEEEECCCCceeecccCCCCcccceeE
Q 016239 187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~ 263 (392)
..++.+|..+++.+.+...... .. .....-+| .|++.... ...|+.+|+.+++++.+..... ..... .
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~~-~~------~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~-~ 356 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRAI-DT------EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE-QNLGG-S 356 (448)
T ss_pred eEEEEEECCCCCeEECccCCCC-cc------ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC-CCcCe-e
Confidence 4688899988888776542211 11 11112244 35444322 2479999999888877642111 11112 2
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
..-+|+.+++..... ....||.+|..+...+.+..
T Consensus 357 ~SpDG~~l~~~~~~~---g~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 357 ITPDGRSMIMVNRTN---GKFNIARQDLETGAMQVLTS 391 (448)
T ss_pred ECCCCCEEEEEEecC---CceEEEEEECCCCCeEEccC
Confidence 333555444433221 25688999988887766543
No 93
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.47 E-value=14 Score=35.53 Aligned_cols=103 Identities=9% Similarity=-0.067 Sum_probs=55.7
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecc--cEEEEEECCCCceeecccCCCCcccceeE
Q 016239 187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~ 263 (392)
..++++|..++..+.+...+.. .. .....-+| .|++..... ..|+.+|+.+++++.+..... ......
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~-~~------~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~-~~~~~~- 337 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAI-DT------EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN-YNARPR- 337 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCC-cC------CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-CccceE-
Confidence 3788999999888776542221 11 11112244 455543222 478999998888776642211 111111
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
...+|+.+++...... ...+|.+|..+...+.+..
T Consensus 338 ~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 338 LSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEccC
Confidence 2334444433322211 4568888988887776654
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=91.31 E-value=4.9 Score=34.84 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCC--CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecC
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP--PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDEL 292 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~--~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~ 292 (392)
+..+|+.||....++.||..++. ++..... .+..++.-..-+|.+|..|.-++ ++.+|+..+.
T Consensus 235 ~k~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG----TirlWQt~~~ 299 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG----TIRLWQTTPG 299 (334)
T ss_pred CCceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc----eEEEEEecCC
Confidence 56899999999999999998774 3322111 11122222345999999985443 7899987654
No 95
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.22 E-value=9.6 Score=33.31 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=66.7
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~ 242 (392)
++.+|++--. ...+..+|+.++.-+.+.. +.+ .+++.. +|.+|+.... .+..+|+
T Consensus 11 ~g~l~~~D~~-----------~~~i~~~~~~~~~~~~~~~-~~~---------~G~~~~~~~g~l~v~~~~--~~~~~d~ 67 (246)
T PF08450_consen 11 DGRLYWVDIP-----------GGRIYRVDPDTGEVEVIDL-PGP---------NGMAFDRPDGRLYVADSG--GIAVVDP 67 (246)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTTTEEEEEES-SSE---------EEEEEECTTSEEEEEETT--CEEEEET
T ss_pred CCEEEEEEcC-----------CCEEEEEECCCCeEEEEec-CCC---------ceEEEEccCCEEEEEEcC--ceEEEec
Confidence 6788887422 2378999998877655432 222 445554 6888888653 4566699
Q ss_pred CCCceeecccCCC----CcccceeEEeeCCeEEEEEeecCCCCCc--eeEEEeecCccceEec
Q 016239 243 KKHVWSEVQTLRP----PGVMFSFLIASPNMLVLAGMCNAPRGPS--FNLWKVDELSMEFSEI 299 (392)
Q Consensus 243 ~~~~W~~i~~~~~----~~~~~~~~~~~~g~l~v~gg~~~~~~~~--~~v~~~d~~~~~W~~~ 299 (392)
.+++++.+...+. ...-+...+.-+|+||+........... ..+|++++. .+.+.+
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 9999988866531 1222334455589998876432221112 679999988 444443
No 96
>PTZ00421 coronin; Provisional
Probab=90.93 E-value=17 Score=35.67 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=19.8
Q ss_pred CCEEEEEeecccEEEEEECCCCc
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHV 246 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~ 246 (392)
+|.+.+.|+.++.|..||+.+++
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCc
Confidence 68888888888999999998765
No 97
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.81 E-value=4.8 Score=39.87 Aligned_cols=123 Identities=14% Similarity=0.108 Sum_probs=66.4
Q ss_pred eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCC-------cccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239 218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPP-------GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK 288 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~-------~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~ 288 (392)
.+.++.+|.||+... .+.|+++|..+. .|+.-...+.. ......++..+++||+... ...++.
T Consensus 63 stPvv~~g~vyv~s~-~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~A 134 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS-YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVA 134 (527)
T ss_pred cCCEEECCEEEEECC-CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEE
Confidence 456778999999655 357999998765 68764332210 0111224566888887442 246778
Q ss_pred eecCccc--eEeccc-CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeee
Q 016239 289 VDELSME--FSEIAI-MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRR 362 (392)
Q Consensus 289 ~d~~~~~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~ 362 (392)
+|..+.+ |+.-.. ..... ....+-++.+++||+-....+....-.++-+|.++++ ..|+.
T Consensus 135 LDa~TGk~~W~~~~~~~~~~~------------~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~--~lW~~ 197 (527)
T TIGR03075 135 LDAKTGKVVWSKKNGDYKAGY------------TITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK--LVWRR 197 (527)
T ss_pred EECCCCCEEeecccccccccc------------cccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc--eeEec
Confidence 8876554 764321 11100 0122344678888775421111111123344888776 66764
No 98
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.24 E-value=13 Score=33.02 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=52.4
Q ss_pred ECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239 223 FRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 223 ~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
-.|.+++..-..+.+++||+.+.+|.+-+.+-...+....-|.-.|++++.... ...|-+||+.+.+.+++..
T Consensus 242 pig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~------agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 242 PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD------AGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccc------cCceeecCcccceEEEecC
Confidence 357788775555799999999999999866554444455556667888875421 4567788999999887654
No 99
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.60 E-value=20 Score=34.26 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=39.6
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeeccc
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQT 252 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~ 252 (392)
.+.+||..+..-+.+.+- .. +. .+-.+.-+|+..+++-....|+++|+.++.-+.+..
T Consensus 383 ~l~iyd~~~~e~kr~e~~-lg-~I-----~av~vs~dGK~~vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKD-LG-NI-----EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred eEEEEecCCceEEEeeCC-cc-ce-----EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence 688999988887776532 11 11 133344577877777766789999999987776643
No 100
>PRK13684 Ycf48-like protein; Provisional
Probab=89.17 E-value=18 Score=33.40 Aligned_cols=92 Identities=12% Similarity=-0.030 Sum_probs=48.6
Q ss_pred CCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEE-ECCCCceeecccCCCCcccceeEEeeCCeEEEE
Q 016239 195 HSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSF-DLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLA 273 (392)
Q Consensus 195 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~y-d~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~ 273 (392)
.-.+|+.+...... . ........+..++..|..+.++.- |....+|+.+..... ..........+++++++
T Consensus 160 gG~tW~~~~~~~~g-~------~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~-~~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 160 GGKNWEALVEDAAG-V------VRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSS-RRLQSMGFQPDGNLWML 231 (334)
T ss_pred CCCCceeCcCCCcc-e------EEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCc-ccceeeeEcCCCCEEEE
Confidence 35689988643221 1 133444444455555555666654 555678998855332 22222223447889888
Q ss_pred EeecCCCCCceeEEEeecCccceEecc
Q 016239 274 GMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 274 gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
|... ..+..-+....+|+.+.
T Consensus 232 g~~G------~~~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 232 ARGG------QIRFNDPDDLESWSKPI 252 (334)
T ss_pred ecCC------EEEEccCCCCCcccccc
Confidence 7421 11111134556899754
No 101
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.61 E-value=17 Score=32.35 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=57.6
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeE-EECCEEEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSA-LFRGRFYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~i~~yd~~ 243 (392)
.+..++-||.+ +.+-+|+..+..=+...++... ..+|.. +.+++ +.++.-.+.|..+....-+|++
T Consensus 108 Sg~~VAcGGLd-----------N~Csiy~ls~~d~~g~~~v~r~-l~gHtg-ylScC~f~dD~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 108 SGNFVACGGLD-----------NKCSIYPLSTRDAEGNVRVSRE-LAGHTG-YLSCCRFLDDNHILTGSGDMTCALWDIE 174 (343)
T ss_pred CCCeEEecCcC-----------ceeEEEecccccccccceeeee-ecCccc-eeEEEEEcCCCceEecCCCceEEEEEcc
Confidence 77888999973 2577888765422222111111 111111 13333 4455444444444567778888
Q ss_pred CCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 244 ~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
+.+=...-.-.......-.+...+++.|+.|+++. ...+| |.....
T Consensus 175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~----~aklW--D~R~~~ 220 (343)
T KOG0286|consen 175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK----SAKLW--DVRSGQ 220 (343)
T ss_pred cceEEEEecCCcccEEEEecCCCCCCeEEeccccc----ceeee--eccCcc
Confidence 87543321111111111112223788999998765 56778 655443
No 102
>PRK04922 tolB translocation protein TolB; Provisional
Probab=88.59 E-value=24 Score=33.96 Aligned_cols=103 Identities=5% Similarity=-0.111 Sum_probs=52.5
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecc--cEEEEEECCCCceeecccCCCCcccceeE
Q 016239 187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~ 263 (392)
..++++|..++.-+.+...... .. .....-+|+ |++..... ..|+.+|..+++.+.+..... ......
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~-~~------~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~-~~~~~~- 342 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGI-DT------EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN-YNARAS- 342 (433)
T ss_pred ceEEEEECCCCCeEECccCCCC-cc------ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC-CccCEE-
Confidence 3688899988876665432111 11 111222454 44443222 368899998887776642111 111122
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
...+|+.+++..... ....++.+|..+...+.+..
T Consensus 343 ~SpDG~~Ia~~~~~~---~~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 343 VSPDGKKIAMVHGSG---GQYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred ECCCCCEEEEEECCC---CceeEEEEECCCCCeEECCC
Confidence 233555444332121 13467777887777766543
No 103
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.44 E-value=17 Score=32.18 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=114.5
Q ss_pred eeeeeCCCCceeeCCCCCCCCCcceEE-eecceEEeecC---cceEecCCcCceeecCC-CCcCccCceEEEEEcCCCCc
Q 016239 80 SFAFDPASNSWFHLPPAQEPRAGSCFI-GANGFFFTTTP---RFGFSRILNTSWHLTSP-LRFSRINPLVGVFYDHDRGH 154 (392)
Q Consensus 80 ~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~g~i~v~gg---~~~ynp~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~ 154 (392)
+=..||.+.+-...+..... ..|.++ .-+|..++..+ .-++||. +.+-++.+- +..+-.+....++ |+
T Consensus 85 iGhLdP~tGev~~ypLg~Ga-~Phgiv~gpdg~~Witd~~~aI~R~dpk-t~evt~f~lp~~~a~~nlet~vf-D~---- 157 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGA-SPHGIVVGPDGSAWITDTGLAIGRLDPK-TLEVTRFPLPLEHADANLETAVF-DP---- 157 (353)
T ss_pred ceecCCCCCceEEEecCCCC-CCceEEECCCCCeeEecCcceeEEecCc-ccceEEeecccccCCCcccceee-CC----
Confidence 34577777776544332222 223333 34666665532 3678886 454333221 1112222223344 22
Q ss_pred ccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc
Q 016239 155 CDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS 234 (392)
Q Consensus 155 ~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~ 234 (392)
.+.++..|.... .-..|+.++.-+..+. |...-.+ --++.-+|.+|+..-..
T Consensus 158 ----------~G~lWFt~q~G~------------yGrLdPa~~~i~vfpa-PqG~gpy-----Gi~atpdGsvwyaslag 209 (353)
T COG4257 158 ----------WGNLWFTGQIGA------------YGRLDPARNVISVFPA-PQGGGPY-----GICATPDGSVWYASLAG 209 (353)
T ss_pred ----------CccEEEeecccc------------ceecCcccCceeeecc-CCCCCCc-----ceEECCCCcEEEEeccc
Confidence 567777764311 1144555554444332 2221111 23444589999987666
Q ss_pred cEEEEEECCCCceeecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCC
Q 016239 235 FSVSSFDLKKHVWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDT 313 (392)
Q Consensus 235 ~~i~~yd~~~~~W~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~ 313 (392)
+.|-..|+.+..=++++.+.. ..-....-+...|++.+.... .-.+++||+...+|.+-.- |....
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg------~g~l~rfdPs~~sW~eypL-Pgs~a------ 276 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG------TGSLHRFDPSVTSWIEYPL-PGSKA------ 276 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC------CceeeEeCcccccceeeeC-CCCCC------
Confidence 789999999886666655443 111111224457888876321 4567888999999987543 32210
Q ss_pred cccCccceeEE-EEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecC
Q 016239 314 EEDDKFASLKC-VGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLP 364 (392)
Q Consensus 314 ~~~~~~~~~~~-~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~ 364 (392)
+ ..+. +-.-+++++.-- ..-.+..+|+++.+ .+.++
T Consensus 277 -----r-pys~rVD~~grVW~sea-----~agai~rfdpeta~----ftv~p 313 (353)
T COG4257 277 -----R-PYSMRVDRHGRVWLSEA-----DAGAIGRFDPETAR----FTVLP 313 (353)
T ss_pred -----C-cceeeeccCCcEEeecc-----ccCceeecCcccce----EEEec
Confidence 1 2233 334456665331 11123466999888 77764
No 104
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.37 E-value=12 Score=37.10 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=61.8
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCC--CeecCCCCCCCCCC--CCCccceeeEEECCEEEEEeecccEEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD--SWELCPPLPADFRS--GYSSQYLSSALFRGRFYVFGIYSFSVSSF 240 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~--~~~~~~~~~~~~~g~ly~~gg~~~~i~~y 240 (392)
++.||+.... ..+..+|..++ .|+.-...+..... .......+.+..++++|+. ...+.++++
T Consensus 69 ~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~-t~dg~l~AL 135 (527)
T TIGR03075 69 DGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFG-TLDARLVAL 135 (527)
T ss_pred CCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEE-cCCCEEEEE
Confidence 7888886432 14777777665 47754332211010 0000013346678888864 445789999
Q ss_pred ECCCC--ceeeccc-CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc--eEe
Q 016239 241 DLKKH--VWSEVQT-LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME--FSE 298 (392)
Q Consensus 241 d~~~~--~W~~i~~-~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~--W~~ 298 (392)
|.++. .|+.-.. ..........-++.+++||+..... .....-.|+.||.++.+ |+.
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ECCCCCEEeecccccccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEec
Confidence 99776 5665322 1111111223355688777643211 11123456677766553 663
No 105
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.75 E-value=29 Score=34.01 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=60.5
Q ss_pred EEeecceEEeecC---cceEecCCcC--ceeecCCCCcCcc-----CceEEEEEcCCCCcccccCCcccCC-CeEEEEec
Q 016239 105 FIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFSRI-----NPLVGVFYDHDRGHCDLASGFACNL-PKFIVVGG 173 (392)
Q Consensus 105 ~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~iyv~gG 173 (392)
.++.++.||+... ++.+|.. ++ .|+.-...+..+. ....++. + +++|+...
T Consensus 57 Pvv~~g~vy~~~~~g~l~AlD~~-tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~V~v~~~ 118 (488)
T cd00216 57 PLVVDGDMYFTTSHSALFALDAA-TGKVLWRYDPKLPADRGCCDVVNRGVAYW-----------------DPRKVFFGTF 118 (488)
T ss_pred CEEECCEEEEeCCCCcEEEEECC-CChhhceeCCCCCccccccccccCCcEEc-----------------cCCeEEEecC
Confidence 3556888988753 4777877 44 6875332221110 1112233 5 67776532
Q ss_pred eeecCcccccccceEEEEEeCCCC--CeecCCCCCC--CCCCCCCccceeeEEECCEEEEEe--------ecccEEEEEE
Q 016239 174 VRFIGGLVDIEDRLAVEIYDPHSD--SWELCPPLPA--DFRSGYSSQYLSSALFRGRFYVFG--------IYSFSVSSFD 241 (392)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~--~~~~~~~~~~~~~~~~~g~ly~~g--------g~~~~i~~yd 241 (392)
. ..+..+|.+++ .|+.-...+. ..... .+.++.++.+|+-. +..+.++++|
T Consensus 119 ~------------g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~-----ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD 181 (488)
T cd00216 119 D------------GRLVALDAETGKQVWKFGNNDQVPPGYTMT-----GAPTIVKKLVIIGSSGAEFFACGVRGALRAYD 181 (488)
T ss_pred C------------CeEEEEECCCCCEeeeecCCCCcCcceEec-----CCCEEECCEEEEeccccccccCCCCcEEEEEE
Confidence 2 15778887765 4875533221 00011 34566677777643 2346899999
Q ss_pred CCCC--ceee
Q 016239 242 LKKH--VWSE 249 (392)
Q Consensus 242 ~~~~--~W~~ 249 (392)
.++. .|+.
T Consensus 182 ~~TG~~~W~~ 191 (488)
T cd00216 182 VETGKLLWRF 191 (488)
T ss_pred CCCCceeeEe
Confidence 9765 5765
No 106
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.58 E-value=30 Score=33.94 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=33.1
Q ss_pred eEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEee
Q 016239 220 SALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMC 276 (392)
Q Consensus 220 ~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~ 276 (392)
.+..++.+|+ |...+.|+++|.++. .|+.- .+..-.....+.+.+|++|+.-..
T Consensus 402 ~~~~g~~v~~-g~~dG~l~ald~~tG~~lW~~~--~~~~~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 402 LATAGNLVFA-GAADGYFRAFDATTGKELWKFR--TPSGIQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred eEecCCeEEE-ECCCCeEEEEECCCCceeeEEE--CCCCceEcCEEEEeCCEEEEEEEe
Confidence 3455566665 446789999999876 46532 222222334444679999987643
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=87.53 E-value=11 Score=35.45 Aligned_cols=123 Identities=17% Similarity=0.173 Sum_probs=66.4
Q ss_pred eeeEEE-CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239 218 LSSALF-RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEF 296 (392)
Q Consensus 218 ~~~~~~-~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W 296 (392)
.++++. +|.|+..|..++.+-.||+++.. .+..+|........+...++--|++-..+.. ++.+| |.....
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~---~V~lw--DLRKl~- 422 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDG---SVKLW--DLRKLK- 422 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCC---eEEEE--Eehhhc-
Confidence 344443 78888888888889999998876 5555555222222233333444444443332 58888 554332
Q ss_pred EecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCC
Q 016239 297 SEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPS 368 (392)
Q Consensus 297 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~ 368 (392)
.+..++.. .+.+. ..-.+-..++..+++| ..+.++.++..+.. |+.+..++.
T Consensus 423 -n~kt~~l~---~~~~v-------~s~~fD~SGt~L~~~g-----~~l~Vy~~~k~~k~----W~~~~~~~~ 474 (506)
T KOG0289|consen 423 -NFKTIQLD---EKKEV-------NSLSFDQSGTYLGIAG-----SDLQVYICKKKTKS----WTEIKELAD 474 (506)
T ss_pred -ccceeecc---ccccc-------eeEEEcCCCCeEEeec-----ceeEEEEEeccccc----ceeeehhhh
Confidence 22222211 01110 1222334455666665 33445666777777 999987763
No 108
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=87.34 E-value=10 Score=34.82 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=55.8
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCC-eecCCCCCCCCCCCCCccceeeEEECCEEEEEeeccc--EEEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS-WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSF--SVSSFD 241 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~--~i~~yd 241 (392)
++++.+..|. .+.+|+...++ +...+.+..+. . ..+...+++.|++ |...+ .++.|+
T Consensus 98 ~~~lv~~~g~-------------~l~v~~l~~~~~l~~~~~~~~~~-~-----i~sl~~~~~~I~v-gD~~~sv~~~~~~ 157 (321)
T PF03178_consen 98 NGRLVVAVGN-------------KLYVYDLDNSKTLLKKAFYDSPF-Y-----ITSLSVFKNYILV-GDAMKSVSLLRYD 157 (321)
T ss_dssp TTEEEEEETT-------------EEEEEEEETTSSEEEEEEE-BSS-S-----EEEEEEETTEEEE-EESSSSEEEEEEE
T ss_pred CCEEEEeecC-------------EEEEEEccCcccchhhheecceE-E-----EEEEeccccEEEE-EEcccCEEEEEEE
Confidence 7776665554 58888887777 77776554442 2 1455566776664 44333 556778
Q ss_pred CCCCceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEEeec
Q 016239 242 LKKHVWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDE 291 (392)
Q Consensus 242 ~~~~~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~ 291 (392)
....+...+..-.......+ +..+ ++..+ +++.... ++.++++++
T Consensus 158 ~~~~~l~~va~d~~~~~v~~-~~~l~d~~~~-i~~D~~g---nl~~l~~~~ 203 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTA-AEFLVDEDTI-IVGDKDG---NLFVLRYNP 203 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEE-EEEE-SSSEE-EEEETTS---EEEEEEE-S
T ss_pred ccCCEEEEEEecCCCccEEE-EEEecCCcEE-EEEcCCC---eEEEEEECC
Confidence 87777777765443233223 2333 55533 3333221 567777764
No 109
>PTZ00420 coronin; Provisional
Probab=87.21 E-value=24 Score=35.30 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=19.1
Q ss_pred CCEEEEEeecccEEEEEECCCCc
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHV 246 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~ 246 (392)
+|.+++.++..+.|..||+.+.+
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCc
Confidence 68888888878899999998764
No 110
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=87.17 E-value=17 Score=30.61 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=57.2
Q ss_pred CEEEEEeecccEEEEEECCCCcee---eccc--CCC-CcccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239 225 GRFYVFGIYSFSVSSFDLKKHVWS---EVQT--LRP-PGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~~W~---~i~~--~~~-~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~ 297 (392)
|++|+|-|. ..++||..+.... .+.. .++ .....+++... ++++|++.| ...|+||...++-
T Consensus 63 ~~~yfFkg~--~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v- 131 (194)
T cd00094 63 GKIYFFKGD--KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKM- 131 (194)
T ss_pred CEEEEECCC--EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccc-
Confidence 899999774 6888987642221 1111 111 02223333333 689999975 4678888755432
Q ss_pred ecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCC
Q 016239 298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESD 354 (392)
Q Consensus 298 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~ 354 (392)
....|......+.+... .-..+....++++|++-|.. ++++|..+.
T Consensus 132 -~~~yP~~i~~~w~g~p~---~idaa~~~~~~~~yfF~g~~-------y~~~d~~~~ 177 (194)
T cd00094 132 -DPGYPKLIETDFPGVPD---KVDAAFRWLDGYYYFFKGDQ-------YWRFDPRSK 177 (194)
T ss_pred -cCCCCcchhhcCCCcCC---CcceeEEeCCCcEEEEECCE-------EEEEeCccc
Confidence 22234444433433321 11233334448999998742 355565544
No 111
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=86.76 E-value=25 Score=32.17 Aligned_cols=131 Identities=15% Similarity=0.194 Sum_probs=74.5
Q ss_pred CC-EEEEEeecccEEEEEECCCCceeecccCC-CCcccceeEEee-CCeE-EEEEeecCCCCCceeEEEeecCccceEec
Q 016239 224 RG-RFYVFGIYSFSVSSFDLKKHVWSEVQTLR-PPGVMFSFLIAS-PNML-VLAGMCNAPRGPSFNLWKVDELSMEFSEI 299 (392)
Q Consensus 224 ~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~~-~~~~~~~~~~~~-~g~l-~v~gg~~~~~~~~~~v~~~d~~~~~W~~~ 299 (392)
++ .|.+..=..+.|..|+...+..+...+.. +++.+--.++.. ++++ |++.--. .++.+|.||....+.+++
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEEe
Confidence 45 34444333468999999877665543221 112221123333 6666 7876432 279999999987777776
Q ss_pred cc---CCHHHHHhhcCCcccCccceeEE--EEeCCEEEEEeccccCCCCeEEEEeecCCCccce--eeeecCCCCCcc
Q 016239 300 AI---MPHDFLYSLVDTEEDDKFASLKC--VGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRC--SWRRLPQLPSPV 370 (392)
Q Consensus 300 ~~---~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~--~W~~~~~~p~~~ 370 (392)
+. ||.. |.+.. ...++ ...|..||+.+- +..++.++.+|+.+++++- .|...+..|...
T Consensus 231 Q~i~tlP~d----F~g~~-----~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F 296 (346)
T COG2706 231 QTIDTLPED----FTGTN-----WAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF 296 (346)
T ss_pred eeeccCccc----cCCCC-----ceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc
Confidence 65 5655 43332 12222 235667777763 3346777788877665222 245556667543
No 112
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.98 E-value=27 Score=31.78 Aligned_cols=199 Identities=10% Similarity=0.033 Sum_probs=84.2
Q ss_pred eCCCCceeeCCCCC-CC-CCcc-eEEeecceEEeecCc-ceEecC-CcCceeecCC-CCcCccCceEEEEEcCCCCcccc
Q 016239 84 DPASNSWFHLPPAQ-EP-RAGS-CFIGANGFFFTTTPR-FGFSRI-LNTSWHLTSP-LRFSRINPLVGVFYDHDRGHCDL 157 (392)
Q Consensus 84 d~~~~~W~~~~~~~-~~-r~~~-~~~~~~g~i~v~gg~-~~ynp~-~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~~ 157 (392)
+-.-.+|....... .+ ...+ ++...++..|++|.. .++-.. -..+|++++- .+.+-..+.+..+.
T Consensus 43 ~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~--------- 113 (302)
T PF14870_consen 43 TDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALG--------- 113 (302)
T ss_dssp SSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEE---------
T ss_pred CCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcC---------
Confidence 33456688765322 22 1222 333346677777643 223221 1459998862 23333344455442
Q ss_pred cCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccE
Q 016239 158 ASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFS 236 (392)
Q Consensus 158 ~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~ 236 (392)
++.+.+++.. ..++.=.=.-.+|+.+..-... . ...... -+|.+..++...+.
T Consensus 114 -------~~~~~l~~~~------------G~iy~T~DgG~tW~~~~~~~~g-s------~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 114 -------DGSAELAGDR------------GAIYRTTDGGKTWQAVVSETSG-S------INDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp -------TTEEEEEETT--------------EEEESSTTSSEEEEE-S-----------EEEEEE-TTS-EEEEETTSSE
T ss_pred -------CCcEEEEcCC------------CcEEEeCCCCCCeeEcccCCcc-e------eEeEEECCCCcEEEEECcccE
Confidence 5566666532 1344433345689987532221 1 122222 35665556655556
Q ss_pred EEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEee--cCccceEecccCCHHHHHhhcCCc
Q 016239 237 VSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD--ELSMEFSEIAIMPHDFLYSLVDTE 314 (392)
Q Consensus 237 i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d--~~~~~W~~~~~~p~~~~~~~~~~~ 314 (392)
+...|+....|+........+.... ...-++.|+++.. . -.++.-+ ....+|.+-. .|....
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~-gf~~~~~lw~~~~-G------g~~~~s~~~~~~~~w~~~~-~~~~~~------- 231 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSM-GFSPDGNLWMLAR-G------GQIQFSDDPDDGETWSEPI-IPIKTN------- 231 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEE-EE-TTS-EEEEET-T------TEEEEEE-TTEEEEE---B--TTSS--------
T ss_pred EEEecCCCccceEEccCccceehhc-eecCCCCEEEEeC-C------cEEEEccCCCCcccccccc-CCcccC-------
Confidence 6688999999998866544333322 2445788888761 1 1232223 4566788722 222110
Q ss_pred ccCccceeEEEE-eCCEEEEEec
Q 016239 315 EDDKFASLKCVG-LGNLIYVFNE 336 (392)
Q Consensus 315 ~~~~~~~~~~~~-~~~~i~v~gg 336 (392)
++....++. .++.+++.||
T Consensus 232 ---~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 232 ---GYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp ----S-EEEEEESSSS-EEEEES
T ss_pred ---ceeeEEEEecCCCCEEEEeC
Confidence 122344444 4589999887
No 113
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=85.31 E-value=21 Score=29.99 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=37.7
Q ss_pred CCEEEEEeecccEEEEEECCCCceee-----ccc-CCCCc-ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQT-LRPPG-VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~~-~~~~~-~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
++++|+|.| +..+.||..+++... +.. .+... ...+++...++++|++-| ...|+||..+++
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g--------~~y~~~d~~~~~ 178 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKG--------DQYWRFDPRSKE 178 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEEC--------CEEEEEeCccce
Confidence 689999988 478899986665421 111 11111 122333333489999874 478899987665
No 114
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.29 E-value=37 Score=32.71 Aligned_cols=102 Identities=9% Similarity=-0.113 Sum_probs=51.4
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeec--ccEEEEEECCCCceeecccCCCCcccceeE
Q 016239 187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~ 263 (392)
..++++|..++.-+.+...+.. .. .....-+|+ |++.... ...|+.+|..+...+.+..... ......
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~~-~~------~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~- 340 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPAI-DT------SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG-RYSTPV- 340 (435)
T ss_pred ceEEEEECCCCceEEccCCCCc-cC------ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC-cccCeE-
Confidence 3688889888876666542221 11 112222444 4433222 2478999988776666543211 111122
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
...+|+.+++...... ...++.+|..+...+.+.
T Consensus 341 ~SpdG~~ia~~~~~~~---~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 341 WSPRGDLIAFTKQGGG---QFSIGVMKPDGSGERILT 374 (435)
T ss_pred ECCCCCEEEEEEcCCC---ceEEEEEECCCCceEecc
Confidence 3335554444332211 357777887666555443
No 115
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.27 E-value=33 Score=32.16 Aligned_cols=154 Identities=8% Similarity=-0.002 Sum_probs=82.4
Q ss_pred EeecceEEee--cC-cceEecCCcC-ceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccc
Q 016239 106 IGANGFFFTT--TP-RFGFSRILNT-SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLV 181 (392)
Q Consensus 106 ~~~~g~i~v~--gg-~~~ynp~~~~-~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~ 181 (392)
+..+|.+|+. .| .+.+|+.+.. .|+...........-....- +++||+-...
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-----------------~G~i~~g~~~------- 120 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-----------------DGKIYVGSWD------- 120 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-----------------CCeEEEeccc-------
Confidence 5668999985 34 5788998433 48643222001111111122 5676665432
Q ss_pred ccccceEEEEEeCCC--CCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCc
Q 016239 182 DIEDRLAVEIYDPHS--DSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPG 257 (392)
Q Consensus 182 ~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~ 257 (392)
...++||..+ ..|+.-.... . +.. ..++..++.+|+-. ..+.++++|..+. .|+.-...+...
T Consensus 121 -----g~~y~ld~~~G~~~W~~~~~~~-~-~~~-----~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~ 187 (370)
T COG1520 121 -----GKLYALDASTGTLVWSRNVGGS-P-YYA-----SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSL 187 (370)
T ss_pred -----ceEEEEECCCCcEEEEEecCCC-e-EEe-----cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCcccc
Confidence 1578888743 4587654431 1 222 45566677888765 4468899988755 676433221111
Q ss_pred ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc--ceEeccc
Q 016239 258 VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM--EFSEIAI 301 (392)
Q Consensus 258 ~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~ 301 (392)
.........++.+|+.... . ...+|.+|..+. .|++...
T Consensus 188 ~~~~~~~~~~~~vy~~~~~----~-~~~~~a~~~~~G~~~w~~~~~ 228 (370)
T COG1520 188 SIYGSPAIASGTVYVGSDG----Y-DGILYALNAEDGTLKWSQKVS 228 (370)
T ss_pred ccccCceeecceEEEecCC----C-cceEEEEEccCCcEeeeeeee
Confidence 1122223556777765421 1 237888887544 4875433
No 116
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.01 E-value=25 Score=30.63 Aligned_cols=139 Identities=11% Similarity=0.155 Sum_probs=72.2
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceee-cccCCC----Cccccee
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRP----PGVMFSF 262 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~----~~~~~~~ 262 (392)
.+.++|..++...... +|.....- ..-.+.-+|++.+..-..+..+++++-+.+... +.+... .++....
T Consensus 147 ~irvWDl~~~~c~~~l-iPe~~~~i----~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHEL-IPEDDTSI----QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred cEEEEEccCCcccccc-CCCCCcce----eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 6999999988765432 23221110 123444577777766666788888887654322 222111 1222222
Q ss_pred EEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCC
Q 016239 263 LIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKY 342 (392)
Q Consensus 263 ~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~ 342 (392)
+..-+++.+...+.+. +..||.. ++. .+..-.+... .|....|+...+--|++-|..+..
T Consensus 222 ~lSPd~k~lat~ssdk----tv~iwn~--~~~-~kle~~l~gh------------~rWvWdc~FS~dg~YlvTassd~~- 281 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDK----TVKIWNT--DDF-FKLELVLTGH------------QRWVWDCAFSADGEYLVTASSDHT- 281 (311)
T ss_pred EECCCCcEEEeecCCc----eEEEEec--CCc-eeeEEEeecC------------CceEEeeeeccCccEEEecCCCCc-
Confidence 3334666666555443 6788844 333 2211111111 145777877777667766544332
Q ss_pred CeEEEEe-ecCCCc
Q 016239 343 PACVCEI-GTESDK 355 (392)
Q Consensus 343 ~~~~~~~-d~~~~~ 355 (392)
..+ |+++++
T Consensus 282 ----~rlW~~~~~k 291 (311)
T KOG0315|consen 282 ----ARLWDLSAGK 291 (311)
T ss_pred ----eeecccccCc
Confidence 455 555555
No 117
>PRK00178 tolB translocation protein TolB; Provisional
Probab=84.27 E-value=40 Score=32.30 Aligned_cols=176 Identities=6% Similarity=-0.060 Sum_probs=87.4
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEeecc-eEEee---cC---cceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG-FFFTT---TP---RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH 150 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g-~i~v~---gg---~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~ 150 (392)
.+++.+|..+++-..+......-. .....-+| .|++. +| .+++|.. +++.+++...... . ....+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~lt~~~~~--~-~~~~~--- 294 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSRVTNHPAI--D-TEPFW--- 294 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEEcccCCCC--c-CCeEE---
Confidence 468888988887766654432111 11122233 44432 22 3777888 6766655432211 1 11111
Q ss_pred CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEE
Q 016239 151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYV 229 (392)
Q Consensus 151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~ 229 (392)
..++.+|+..... .....++.+|..++.++.+.... ... ......-+| .|++
T Consensus 295 -----------spDg~~i~f~s~~---------~g~~~iy~~d~~~g~~~~lt~~~---~~~----~~~~~Spdg~~i~~ 347 (430)
T PRK00178 295 -----------GKDGRTLYFTSDR---------GGKPQIYKVNVNGGRAERVTFVG---NYN----ARPRLSADGKTLVM 347 (430)
T ss_pred -----------CCCCCEEEEEECC---------CCCceEEEEECCCCCEEEeecCC---CCc----cceEECCCCCEEEE
Confidence 1224456554322 11236888898888877664211 111 011112233 4555
Q ss_pred Eeecc--cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 230 FGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 230 ~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
..... ..|+.+|+.+...+.+..... .... ....+|+.+++...... ...++.++....
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~p-~~spdg~~i~~~~~~~g---~~~l~~~~~~g~ 408 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTDTSL--DESP-SVAPNGTMLIYATRQQG---RGVLMLVSINGR 408 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccCCCC--CCCc-eECCCCCEEEEEEecCC---ceEEEEEECCCC
Confidence 43222 368999999988777654321 1122 24457777666543321 345666666543
No 118
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=83.71 E-value=29 Score=30.20 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~~~i~~yd~~ 243 (392)
.+.|+..||.. .++..|.++++-+..-. +++..-|+.+.-+.. =.+.|+.++.+-.+|.+
T Consensus 126 enSi~~AgGD~------------~~y~~dlE~G~i~r~~r-------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 126 ENSILFAGGDG------------VIYQVDLEDGRIQREYR-------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred CCcEEEecCCe------------EEEEEEecCCEEEEEEc-------CCcceeeeeeecccCcceeecCCCccEEEEecc
Confidence 78888888852 47777888887665421 111223666653322 23347777899999999
Q ss_pred CCceeecccCC--C------CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHH
Q 016239 244 KHVWSEVQTLR--P------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD 305 (392)
Q Consensus 244 ~~~W~~i~~~~--~------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~ 305 (392)
+.+-..+-.+- + -+....++....+-|.+-|| +...+| +....+-+.+-++|..
T Consensus 187 t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslw--hLrsse~t~vfpipa~ 248 (325)
T KOG0649|consen 187 TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLW--HLRSSESTCVFPIPAR 248 (325)
T ss_pred ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEE--eccCCCceEEEecccc
Confidence 88765542211 1 11112233333333333333 268889 5455555666666654
No 119
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=82.17 E-value=47 Score=31.53 Aligned_cols=102 Identities=11% Similarity=-0.109 Sum_probs=55.6
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeec--ccEEEEEECCCCceeecccCCCCcccceeE
Q 016239 187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~ 263 (392)
..++.+|..++..+.+...... .. .....-+| .|++.... ...|+.+|..+.++..+..... ......
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~-~~------~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~--~~~~~~ 328 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGI-DT------EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG--YNASPS 328 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCC-CC------CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC--CccCeE
Confidence 3688889888877766532221 11 11111244 45444322 2379999998887766543211 111122
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
...+|+.+++..... ....|+.+|..+..++.+.
T Consensus 329 ~spdg~~i~~~~~~~---~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 329 WSPDGDLIAFVHREG---GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ECCCCCEEEEEEccC---CceEEEEEeCCCCCeEEcc
Confidence 334666666654322 2567888898876666554
No 120
>PRK04043 tolB translocation protein TolB; Provisional
Probab=82.08 E-value=49 Score=31.73 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=60.8
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecc--cEEEEEECCCCceeecccCCCCcccceeE
Q 016239 187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~ 263 (392)
..++.+|..++.++.+...+.. .. .....-+| +||+..... ..|+.+|+.+++.+.+..... ... .
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~-d~------~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~-~ 325 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGI-DV------NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNS-S 325 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCc-cC------ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCc-e
Confidence 4799999989988888654321 11 11122234 566664322 379999999888766643211 122 2
Q ss_pred EeeCCeEEEEEeecCC-C--CCceeEEEeecCccceEecccC
Q 016239 264 IASPNMLVLAGMCNAP-R--GPSFNLWKVDELSMEFSEIAIM 302 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~-~--~~~~~v~~~d~~~~~W~~~~~~ 302 (392)
..-+|+.+++...... . ....++|.+|.++..++.+..-
T Consensus 326 ~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 326 VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 3445554444332221 1 1236899999988888887763
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=81.19 E-value=41 Score=30.22 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=50.2
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe-e
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-S 266 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~ 266 (392)
++..||..++.-+..-....+ ...+++.+..=-+.||..+.|-.||+.+..=..+..-...- ..+.- .
T Consensus 36 slrlYdv~~~~l~~~~~~~~p--------lL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i---~ci~~~~ 104 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAP--------LLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGI---RCIEYSY 104 (323)
T ss_pred cEEEEeccchhhhhheecCCc--------eeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCce---EEEEeec
Confidence 577888877732221111111 13455667666677888999999999888755553322111 11111 1
Q ss_pred CCeEEEEEeecCCCCCceeEEEeecCc
Q 016239 267 PNMLVLAGMCNAPRGPSFNLWKVDELS 293 (392)
Q Consensus 267 ~g~l~v~gg~~~~~~~~~~v~~~d~~~ 293 (392)
....++.|+.++ ++.+| |+..
T Consensus 105 ~~~~vIsgsWD~----~ik~w--D~R~ 125 (323)
T KOG1036|consen 105 EVGCVISGSWDK----TIKFW--DPRN 125 (323)
T ss_pred cCCeEEEcccCc----cEEEE--eccc
Confidence 233345555544 78999 7765
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=80.86 E-value=64 Score=32.25 Aligned_cols=150 Identities=10% Similarity=0.061 Sum_probs=77.8
Q ss_pred cceEEeecCc-----ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc
Q 016239 109 NGFFFTTTPR-----FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183 (392)
Q Consensus 109 ~g~i~v~gg~-----~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~ 183 (392)
+|.+.+++-+ +..+|.-.-+-+.+..++..+...+..... .++++++++.-
T Consensus 393 dg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft--------------id~~k~~~~s~---------- 448 (691)
T KOG2048|consen 393 DGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFT--------------IDKNKLFLVSK---------- 448 (691)
T ss_pred CCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEE--------------ecCceEEEEec----------
Confidence 5544444432 444443112445666777766554433331 11778887751
Q ss_pred ccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCC-Cccccee
Q 016239 184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP-PGVMFSF 262 (392)
Q Consensus 184 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~-~~~~~~~ 262 (392)
...+++.++.++.+-+++.+......... -.......+++.|-++++ .+.|++||+++.+-..+..... .-...+.
T Consensus 449 -~~~~le~~el~~ps~kel~~~~~~~~~~~-I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~~~~l~~rln~~vTa~~~ 525 (691)
T KOG2048|consen 449 -NIFSLEEFELETPSFKELKSIQSQAKCPS-ISRLVVSSDGNYIAAIST-RGQIFVYNLETLESHLLKVRLNIDVTAAAF 525 (691)
T ss_pred -ccceeEEEEecCcchhhhhccccccCCCc-ceeEEEcCCCCEEEEEec-cceEEEEEcccceeecchhccCcceeeeec
Confidence 23367777777777776654332211110 001112223556666664 5689999999998777654333 1111111
Q ss_pred EEeeCCeEEEEEeecCCCCCceeEEEeecC
Q 016239 263 LIASPNMLVLAGMCNAPRGPSFNLWKVDEL 292 (392)
Q Consensus 263 ~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~ 292 (392)
.....++|.+.-. ..++++||.+
T Consensus 526 ~~~~~~~lvvats-------~nQv~efdi~ 548 (691)
T KOG2048|consen 526 SPFVRNRLVVATS-------NNQVFEFDIE 548 (691)
T ss_pred cccccCcEEEEec-------CCeEEEEecc
Confidence 1133556655432 4577777763
No 123
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=80.60 E-value=23 Score=27.46 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=55.0
Q ss_pred eeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC--CHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC-
Q 016239 265 ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM--PHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK- 341 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~- 341 (392)
-.+|-||-+... .......|-+||..+++|+.+... +.. .......+..+|+|.++.......
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~------------~~~~~~L~~~~G~L~~v~~~~~~~~ 68 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYS------------SDCSSTLIEYKGKLALVSYNDQGEP 68 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeecc------------ccCccEEEEeCCeEEEEEecCCCCc
Confidence 358889877754 222256777889999999876653 111 134677888999999987543322
Q ss_pred CCeEEEEe-ecCCCccceeeeecCC-CCC
Q 016239 342 YPACVCEI-GTESDKCRCSWRRLPQ-LPS 368 (392)
Q Consensus 342 ~~~~~~~~-d~~~~~~~~~W~~~~~-~p~ 368 (392)
....+.-+ |.+..+ |...-- +|.
T Consensus 69 ~~~~iWvLeD~~k~~----Wsk~~~~lp~ 93 (129)
T PF08268_consen 69 DSIDIWVLEDYEKQE----WSKKHIVLPP 93 (129)
T ss_pred ceEEEEEeeccccce----EEEEEEECCh
Confidence 33455555 776767 986633 443
No 124
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=80.21 E-value=16 Score=32.50 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCCCCCCCCcceEEee--cc-e-EEeecCcceEec---CCcCceeecC
Q 016239 93 LPPAQEPRAGSCFIGA--NG-F-FFTTTPRFGFSR---ILNTSWHLTS 133 (392)
Q Consensus 93 ~~~~~~~r~~~~~~~~--~g-~-i~v~gg~~~ynp---~~~~~W~~~~ 133 (392)
+...|.+|++|++.+. .| . ..++||.- |-| .+|..|..+-
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRS-Y~P~~qRTTenWNsVv 127 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRS-YMPPGQRTTENWNSVV 127 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcc-cCCccccchhhcceec
Confidence 3678999999965543 33 3 44556631 222 2345676553
No 125
>PRK03629 tolB translocation protein TolB; Provisional
Probab=79.90 E-value=59 Score=31.26 Aligned_cols=101 Identities=12% Similarity=-0.002 Sum_probs=53.7
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecc--cEEEEEECCCCceeecccCCCCcccceeEE
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFLI 264 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~ 264 (392)
.++++|..+++-+.+...+.. .. .....-+| .|++..... ..|+.+|+.+.+.+.+..... ..... ..
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~-~~------~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-~~~~~-~w 294 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRH-NG------APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEP-TW 294 (429)
T ss_pred EEEEEECCCCCeEEccCCCCC-cC------CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-CcCce-EE
Confidence 688888887766665543332 11 11122245 455543222 369999998887766643321 11111 22
Q ss_pred eeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 265 ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
.-+|+-+++..... ...++|.+|..+..-+++.
T Consensus 295 SPDG~~I~f~s~~~---g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 295 FPDSQNLAYTSDQA---GRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CCCCCEEEEEeCCC---CCceEEEEECCCCCeEEee
Confidence 33565444433221 1468999888776655553
No 126
>PRK03629 tolB translocation protein TolB; Provisional
Probab=79.79 E-value=59 Score=31.24 Aligned_cols=102 Identities=7% Similarity=-0.079 Sum_probs=53.4
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeec--ccEEEEEECCCCceeecccCCCCcccceeEE
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFLI 264 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~ 264 (392)
.++++|..++..+.+..-... .. .....-+|+ |+..... ...|+.+|+.+..-+.+..... ... ....
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~-~~------~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~-~~~~ 338 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSN-NT------EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS-QNQ-DADV 338 (429)
T ss_pred EEEEEECCCCCEEEccCCCCC-cC------ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC-Ccc-CEEE
Confidence 588899988877766532221 10 111122454 4333222 2378888988776555532111 111 1223
Q ss_pred eeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239 265 ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
.-+|+.+++...... ...+|.+|..+.+++.+..
T Consensus 339 SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 339 SSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CCCCCEEEEEEccCC---CceEEEEECCCCCeEEeCC
Confidence 345655544432221 3567888988888777664
No 127
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.60 E-value=19 Score=33.66 Aligned_cols=154 Identities=16% Similarity=0.233 Sum_probs=81.1
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCC---CCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecccEEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHS---DSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYSFSVSSF 240 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~~~i~~y 240 (392)
++.-+|.|+.+ .++..+|... +.|+-+.. + +.. .-++..+|+ ++.++ ....|..|
T Consensus 323 Dg~~~V~Gs~d-----------r~i~~wdlDgn~~~~W~gvr~---~-~v~-----dlait~Dgk~vl~v~-~d~~i~l~ 381 (519)
T KOG0293|consen 323 DGFRFVTGSPD-----------RTIIMWDLDGNILGNWEGVRD---P-KVH-----DLAITYDGKYVLLVT-VDKKIRLY 381 (519)
T ss_pred CCceeEecCCC-----------CcEEEecCCcchhhccccccc---c-eeE-----EEEEcCCCcEEEEEe-cccceeee
Confidence 66778887752 2455555543 46877754 1 221 233345665 55544 56678888
Q ss_pred ECCCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCcc
Q 016239 241 DLKKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKF 319 (392)
Q Consensus 241 d~~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~ 319 (392)
+.++..=..+-... ...... ..-++++.++.-... .+.+| |.+ .|+.+.. ++|.+... +
T Consensus 382 ~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~q----ei~LW--Dl~--e~~lv~k--------Y~Ghkq~~-f 441 (519)
T KOG0293|consen 382 NREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQ----EIHLW--DLE--ENKLVRK--------YFGHKQGH-F 441 (519)
T ss_pred chhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccC----eeEEe--ecc--hhhHHHH--------hhcccccc-e
Confidence 88765433221111 111222 344788888764322 57888 555 4543332 33332211 3
Q ss_pred ceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCCcc-cccc
Q 016239 320 ASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPV-NEFH 374 (392)
Q Consensus 320 ~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~-~~~~ 374 (392)
-..+|++-++.-||..|..+.. +.+ |+.....|.+. .+|+
T Consensus 442 iIrSCFgg~~~~fiaSGSED~k-----vyI----------Whr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSK-----VYI----------WHRISGKLLAVLSGHS 482 (519)
T ss_pred EEEeccCCCCcceEEecCCCce-----EEE----------EEccCCceeEeecCCc
Confidence 3567777777667776654444 445 76665555443 3443
No 128
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=79.11 E-value=59 Score=30.78 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=67.1
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~ 242 (392)
++-|+..|-. ...+.+||..... .++.+|.. ... -..+.+ ||.-.+.+..++.|..+|+
T Consensus 358 DgLifgtgt~-----------d~~vkiwdlks~~--~~a~Fpgh-t~~-----vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 358 DGLIFGTGTP-----------DGVVKIWDLKSQT--NVAKFPGH-TGP-----VKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred CceEEeccCC-----------CceEEEEEcCCcc--ccccCCCC-CCc-----eeEEEeccCceEEEEEecCCeEEEEEe
Confidence 6777777654 2258889987776 55555542 211 334444 4444444555567999999
Q ss_pred CCCc-eeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHH
Q 016239 243 KKHV-WSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD 305 (392)
Q Consensus 243 ~~~~-W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~ 305 (392)
.+.+ +..+....... .........|..+.++|. .+.||.++..+.+|+++..++..
T Consensus 419 RKl~n~kt~~l~~~~~-v~s~~fD~SGt~L~~~g~------~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 419 RKLKNFKTIQLDEKKE-VNSLSFDQSGTYLGIAGS------DLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred hhhcccceeecccccc-ceeEEEcCCCCeEEeecc------eeEEEEEecccccceeeehhhhc
Confidence 7654 22222211111 112222335666655542 68899999999999999887765
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=78.92 E-value=46 Score=29.40 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=15.9
Q ss_pred CCE-EEEEeecccEEEEEECCCCce
Q 016239 224 RGR-FYVFGIYSFSVSSFDLKKHVW 247 (392)
Q Consensus 224 ~g~-ly~~gg~~~~i~~yd~~~~~W 247 (392)
++. +++.+...+.|..||+.+.+.
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCccee
Confidence 454 444444567899999987653
No 130
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.85 E-value=53 Score=30.14 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=85.9
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecccEEE--EEECCCCceeeccc---CCC---Ccc
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYSFSVS--SFDLKKHVWSEVQT---LRP---PGV 258 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~~~i~--~yd~~~~~W~~i~~---~~~---~~~ 258 (392)
.+..|+...+.-+...+.......+ ..|-+-.-++ ..|++.-.+..|. .||....+.+++.. +|. ...
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~G---PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAG---PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred eEEEEEcccCccccccccccCCCCC---cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 6778887766655443221111222 1132222244 5899988877654 56666677777643 333 222
Q ss_pred cceeE-EeeCCeE-EEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239 259 MFSFL-IASPNML-VLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE 336 (392)
Q Consensus 259 ~~~~~-~~~~g~l-~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg 336 (392)
..+++ +..+|+. |+.. .+..++.++..|+.+..-..+...+.+.. . +| .|.+.-.|+.|++.+-
T Consensus 245 ~~aaIhis~dGrFLYasN----Rg~dsI~~f~V~~~~g~L~~~~~~~teg~-------~--PR-~F~i~~~g~~Liaa~q 310 (346)
T COG2706 245 WAAAIHISPDGRFLYASN----RGHDSIAVFSVDPDGGKLELVGITPTEGQ-------F--PR-DFNINPSGRFLIAANQ 310 (346)
T ss_pred ceeEEEECCCCCEEEEec----CCCCeEEEEEEcCCCCEEEEEEEeccCCc-------C--Cc-cceeCCCCCEEEEEcc
Confidence 22332 2335655 5433 23337888888888776555544433310 0 11 5566666777777763
Q ss_pred cccCCCCeEEEEeecCCCccceeeeecCC
Q 016239 337 EYHKKYPACVCEIGTESDKCRCSWRRLPQ 365 (392)
Q Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~ 365 (392)
++..+.++++|++|++ -+.+..
T Consensus 311 ---~sd~i~vf~~d~~TG~----L~~~~~ 332 (346)
T COG2706 311 ---KSDNITVFERDKETGR----LTLLGR 332 (346)
T ss_pred ---CCCcEEEEEEcCCCce----EEeccc
Confidence 4455888888999999 666654
No 131
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.59 E-value=62 Score=30.77 Aligned_cols=95 Identities=19% Similarity=0.095 Sum_probs=56.6
Q ss_pred eEEEEEeCCCC-----CeecCCCCCCCCCCCCCccceeeEEECCEEEEEeec---ccEEEEEECCCCc---eeecccCCC
Q 016239 187 LAVEIYDPHSD-----SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIY---SFSVSSFDLKKHV---WSEVQTLRP 255 (392)
Q Consensus 187 ~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~---~~~i~~yd~~~~~---W~~i~~~~~ 255 (392)
+.++..|.... .|+.+.+--.. . ...+...++.+|+.... .+.|+++++.+.. |..+-..+.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~-~------~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDG-V------EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS--------EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCc-e------EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC
Confidence 57888888765 77777531111 1 13344568899998643 3689999998775 664323232
Q ss_pred CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecC
Q 016239 256 PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDEL 292 (392)
Q Consensus 256 ~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~ 292 (392)
.......+...++.|++....+. ...|.++|..
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~----~~~l~v~~~~ 357 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENG----SSRLRVYDLD 357 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETT----EEEEEEEETT
T ss_pred CceeEEEEEEECCEEEEEEEECC----ccEEEEEECC
Confidence 23344455667899988764332 4566666777
No 132
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=77.42 E-value=66 Score=30.47 Aligned_cols=140 Identities=7% Similarity=-0.051 Sum_probs=69.1
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEeecc-eEEeec---C---cceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG-FFFTTT---P---RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH 150 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g-~i~v~g---g---~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~ 150 (392)
.+++.+|..+++...+.......... ....+| .|++.. + .+.+|.. ++..+++........ .. .+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~l~~~~~~~~--~~-~~--- 285 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTRLTNGPGIDT--EP-SW--- 285 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCCCccEEEEECC-CCCEEECCCCCCCCC--CE-EE---
Confidence 46788898877665554433222111 122243 454432 1 3677877 555555533221110 11 11
Q ss_pred CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEE
Q 016239 151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVF 230 (392)
Q Consensus 151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~ 230 (392)
..++.+|+..... .....++.+|..++.++.+..-... .. .....-+|+.+++
T Consensus 286 -----------s~dg~~l~~~s~~---------~g~~~iy~~d~~~~~~~~l~~~~~~-~~------~~~~spdg~~i~~ 338 (417)
T TIGR02800 286 -----------SPDGKSIAFTSDR---------GGSPQIYMMDADGGEVRRLTFRGGY-NA------SPSWSPDGDLIAF 338 (417)
T ss_pred -----------CCCCCEEEEEECC---------CCCceEEEEECCCCCEEEeecCCCC-cc------CeEECCCCCEEEE
Confidence 1114455544322 1122688888888777666422111 10 1122235665555
Q ss_pred eecc---cEEEEEECCCCceeeccc
Q 016239 231 GIYS---FSVSSFDLKKHVWSEVQT 252 (392)
Q Consensus 231 gg~~---~~i~~yd~~~~~W~~i~~ 252 (392)
.... ..|+.+|+.+..++.+..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEccCCceEEEEEeCCCCCeEEccC
Confidence 4433 379999998877766643
No 133
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.87 E-value=1.3e+02 Score=32.95 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=40.7
Q ss_pred ECCEEEEEeecccEEEEEECCCCceeecccCCC----------Ccc-cceeE-EeeCCeEEEEEeecCCCCCceeEEEee
Q 016239 223 FRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP----------PGV-MFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVD 290 (392)
Q Consensus 223 ~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~----------~~~-~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d 290 (392)
-+|.+|+.....+.|.+||+.+.....+..... ... .-..+ +.-+|+|||....+. .+.+| |
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn----~Irvi--d 886 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS----LIRYL--D 886 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC----EEEEE--E
Confidence 367899998888999999999887766543211 001 11222 334788988764322 45555 6
Q ss_pred cCccc
Q 016239 291 ELSME 295 (392)
Q Consensus 291 ~~~~~ 295 (392)
..+.+
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 55543
No 134
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=75.16 E-value=74 Score=29.89 Aligned_cols=39 Identities=33% Similarity=0.539 Sum_probs=35.3
Q ss_pred CcccCCcHHHHHHHHhhCC-hhhHHHhhccchhhhhhhcC
Q 016239 8 SAFTTLSTDITERILSLLP-IPTLIRASSVCKSWRSIISA 46 (392)
Q Consensus 8 ~~~~~Lp~dl~~~iL~rLP-~~~l~~~~~v~k~W~~l~~~ 46 (392)
..|++||+||+..|..||| ..++.++++||++|++.+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4799999999999999996 56999999999999997764
No 135
>PRK04792 tolB translocation protein TolB; Provisional
Probab=74.88 E-value=84 Score=30.42 Aligned_cols=176 Identities=9% Similarity=-0.043 Sum_probs=85.6
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEeecc-eEEee---cC---cceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG-FFFTT---TP---RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH 150 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g-~i~v~---gg---~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~ 150 (392)
.+++.+|..+++-..+...+..... ....-+| .|++. .| .+++|.. +++.+++..... ......+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~lt~~~~---~~~~p~w--- 313 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTRITRHRA---IDTEPSW--- 313 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC-eeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEECccCCC---CccceEE---
Confidence 5688899888776655544322111 1122233 34433 22 4777887 666666543211 1111111
Q ss_pred CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEE
Q 016239 151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYV 229 (392)
Q Consensus 151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~ 229 (392)
..++.+|+..... .....++.+|..+++++.+..- .. ... .....-+| .|++
T Consensus 314 -----------SpDG~~I~f~s~~---------~g~~~Iy~~dl~~g~~~~Lt~~-g~-~~~-----~~~~SpDG~~l~~ 366 (448)
T PRK04792 314 -----------HPDGKSLIFTSER---------GGKPQIYRVNLASGKVSRLTFE-GE-QNL-----GGSITPDGRSMIM 366 (448)
T ss_pred -----------CCCCCEEEEEECC---------CCCceEEEEECCCCCEEEEecC-CC-CCc-----CeeECCCCCEEEE
Confidence 1114455554322 1123788899988888876421 11 110 11222244 4544
Q ss_pred Eeecc--cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 230 FGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 230 ~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
.+... ..|+.+|+.+.+.+.+..... -.... ..-+|+.+++...... ...+|.++.+..
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ps-~spdG~~I~~~~~~~g---~~~l~~~~~~G~ 427 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQVLTSTRL--DESPS-VAPNGTMVIYSTTYQG---KQVLAAVSIDGR 427 (448)
T ss_pred EEecCCceEEEEEECCCCCeEEccCCCC--CCCce-ECCCCCEEEEEEecCC---ceEEEEEECCCC
Confidence 43322 378899999888776643221 11122 3345655544432221 345777776433
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=74.29 E-value=82 Score=30.02 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=18.3
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
+..+|.|.+.|..++ .+.|| |....+
T Consensus 285 is~DgtlLlSGd~dg----~VcvW--di~S~Q 310 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDG----KVCVW--DIYSKQ 310 (476)
T ss_pred EecCccEEEeeCCCC----CEEEE--ecchHH
Confidence 345999999986544 78888 665544
No 137
>PRK05137 tolB translocation protein TolB; Provisional
Probab=73.62 E-value=88 Score=30.07 Aligned_cols=185 Identities=8% Similarity=-0.069 Sum_probs=86.2
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEeecc-eEEeec---C---cceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG-FFFTTT---P---RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH 150 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g-~i~v~g---g---~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~ 150 (392)
..++.+|+.+++...+...+..-... ...-+| .|++.. | .+++|.. +++-+++...+.. . ....+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~Lt~~~~~--~-~~~~~--- 297 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTRLTDSPAI--D-TSPSY--- 297 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCCCceEEEEECC-CCceEEccCCCCc--c-CceeE---
Confidence 56888999888777665444322111 122234 443332 1 3667877 5555554432211 0 01111
Q ss_pred CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEE
Q 016239 151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYV 229 (392)
Q Consensus 151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~ 229 (392)
.+++.+|+..... .....++++|..++..+.+..... ... .....-+| .|++
T Consensus 298 -----------spDG~~i~f~s~~---------~g~~~Iy~~d~~g~~~~~lt~~~~--~~~-----~~~~SpdG~~ia~ 350 (435)
T PRK05137 298 -----------SPDGSQIVFESDR---------SGSPQLYVMNADGSNPRRISFGGG--RYS-----TPVWSPRGDLIAF 350 (435)
T ss_pred -----------cCCCCEEEEEECC---------CCCCeEEEEECCCCCeEEeecCCC--ccc-----CeEECCCCCEEEE
Confidence 1114444433211 112368888887776666543211 111 11122244 4444
Q ss_pred Eeec--ccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 230 FGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 230 ~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
.... ...|+.+|+.++....+.... ...... ..-+|+.+++............+|.+|.++..-+.+.
T Consensus 351 ~~~~~~~~~i~~~d~~~~~~~~lt~~~--~~~~p~-~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSGERILTSGF--LVEGPT-WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEcCCCceEEEEEECCCCceEeccCCC--CCCCCe-ECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 3321 247889998776655543321 112222 3446666555432221111257888888766544443
No 138
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.54 E-value=68 Score=31.16 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~ 242 (392)
.+.+++.|+.+ .+|.++|..+++-...-..... . ..++.+ +|.+++.+..++.|..||+
T Consensus 257 ~g~~i~Sgs~D-----------~tvriWd~~~~~~~~~l~~hs~---~-----is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 257 DGNLLVSGSDD-----------GTVRIWDVRTGECVRKLKGHSD---G-----ISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred CCCEEEEecCC-----------CcEEEEeccCCeEEEeeeccCC---c-----eEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 34788887763 2688899887443332221111 1 233333 6778888888899999999
Q ss_pred CCCcee
Q 016239 243 KKHVWS 248 (392)
Q Consensus 243 ~~~~W~ 248 (392)
.++.-.
T Consensus 318 ~~~~~~ 323 (456)
T KOG0266|consen 318 ETGSKL 323 (456)
T ss_pred CCCcee
Confidence 888743
No 139
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.23 E-value=1.2e+02 Score=31.60 Aligned_cols=76 Identities=13% Similarity=-0.004 Sum_probs=38.3
Q ss_pred EECCEEEEEeecccEEEEEECCCCc--eee-----------cccCCCCcc-cceeEEeeCCeEEEEEeecCC---CCCce
Q 016239 222 LFRGRFYVFGIYSFSVSSFDLKKHV--WSE-----------VQTLRPPGV-MFSFLIASPNMLVLAGMCNAP---RGPSF 284 (392)
Q Consensus 222 ~~~g~ly~~gg~~~~i~~yd~~~~~--W~~-----------i~~~~~~~~-~~~~~~~~~g~l~v~gg~~~~---~~~~~ 284 (392)
.++++||+ +..++.++++|.++++ |+. +...++... ....-++.++.+++-+...++ ....-
T Consensus 258 ~~~~rV~~-~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 258 DCARRIIL-PTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred ccCCEEEE-ecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 45667775 4446788888887764 431 111111111 122235567777764321111 12245
Q ss_pred eEEEeecCccc--eEe
Q 016239 285 NLWKVDELSME--FSE 298 (392)
Q Consensus 285 ~v~~~d~~~~~--W~~ 298 (392)
.|..||..+.+ |+-
T Consensus 337 ~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 337 VIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEEEECCCCcEeeEE
Confidence 56677776654 654
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.14 E-value=63 Score=28.20 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred EEEEEeecccEEEEEECCCCceeecccCCC--Cccccee-EEee-CCeEEEEEeecCCCCCceeEEEeecCccceEe--c
Q 016239 226 RFYVFGIYSFSVSSFDLKKHVWSEVQTLRP--PGVMFSF-LIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE--I 299 (392)
Q Consensus 226 ~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~--~~~~~~~-~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~--~ 299 (392)
+=++.||.++.|-..+..+++|..-..+.. .-....+ .-.. -.+-++....... .+-||.-+.+.++|+. +
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg---~viIwt~~~e~e~wk~tll 252 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG---TVIIWTKDEEYEPWKKTLL 252 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC---cEEEEEecCccCccccccc
Confidence 456778888765555555668876543222 0000000 0111 1222333322211 5677777877788874 2
Q ss_pred ccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCC
Q 016239 300 AIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQL 366 (392)
Q Consensus 300 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~ 366 (392)
..+|... .+.+-...|+.|-|.||... ..+-.....++ |..++..
T Consensus 253 ~~f~~~~-------------w~vSWS~sGn~LaVs~GdNk-----vtlwke~~~Gk----w~~v~~~ 297 (299)
T KOG1332|consen 253 EEFPDVV-------------WRVSWSLSGNILAVSGGDNK-----VTLWKENVDGK----WEEVGEV 297 (299)
T ss_pred ccCCcce-------------EEEEEeccccEEEEecCCcE-----EEEEEeCCCCc----EEEcccc
Confidence 3344443 36677778888888887321 11222344567 9887654
No 141
>PLN00181 protein SPA1-RELATED; Provisional
Probab=72.66 E-value=1.1e+02 Score=32.14 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=34.5
Q ss_pred CCEEEEEeecccEEEEEECCCCc--eeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHV--WSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
+|.+++.|+.++.|..||..+.. ...+. ........+...++..++.++.++ .+.+|.+
T Consensus 629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~~~~~lvs~s~D~----~ikiWd~ 689 (793)
T PLN00181 629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFVDSSTLVSSSTDN----TLKLWDL 689 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEeCCCEEEEEECCC----EEEEEeC
Confidence 57888889888999999997643 11111 111111222233666666665443 6888944
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=72.45 E-value=67 Score=31.03 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=38.4
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~~ 243 (392)
+.+|+|--|++ ..+.+||.....=+..-..-.| ..++++ -+|.+.++|...+.|+.||..
T Consensus 220 ne~l~vsVG~D-----------kki~~yD~~s~~s~~~l~y~~P--------lstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 220 NEALLVSVGYD-----------KKINIYDIRSQASTDRLTYSHP--------LSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ccceEEEeccc-----------ceEEEeecccccccceeeecCC--------cceeeecCCceEEEeecCCceEEEEecc
Confidence 77888887873 2689999875443221111111 122232 257777888777899999986
Q ss_pred CC
Q 016239 244 KH 245 (392)
Q Consensus 244 ~~ 245 (392)
..
T Consensus 281 ~~ 282 (673)
T KOG4378|consen 281 ST 282 (673)
T ss_pred cC
Confidence 53
No 143
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.88 E-value=56 Score=29.39 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=41.7
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM 302 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~ 302 (392)
+|.....|+.++.+-.+|+.+++-..+..-..+-...+. +.. +-.+++.|..++ ++..| |.....=...-.|
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~w-v~~~~~~cl~TGSWDK----TlKfW--D~R~~~pv~t~~L 155 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHW-VPGMNYQCLVTGSWDK----TLKFW--DTRSSNPVATLQL 155 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEE-ecCCCcceeEeccccc----ceeec--ccCCCCeeeeeec
Confidence 566666788889999999999987777443221122221 211 222344444333 67888 6553322222335
Q ss_pred CHHH
Q 016239 303 PHDF 306 (392)
Q Consensus 303 p~~~ 306 (392)
|++.
T Consensus 156 PeRv 159 (347)
T KOG0647|consen 156 PERV 159 (347)
T ss_pred ccee
Confidence 6653
No 144
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=71.47 E-value=34 Score=30.86 Aligned_cols=95 Identities=14% Similarity=0.275 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceee-cccCCCCcccceeEE
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRPPGVMFSFLI 264 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~~~~~~~~~~ 264 (392)
....||..|-+.-.-+. |..-..+ ....|-+ .|+||+.|..++.|-.+|--+++-.. +...........+..
T Consensus 239 ~~rlYdv~T~Qcfvsan-Pd~qht~----ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSAN-PDDQHTG----AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred ceeEEeccceeEeeecC-ccccccc----ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence 67889987765433322 3220111 0112222 58999999999999999887775433 222222222233334
Q ss_pred eeCCeEEEEEeecCCCCCceeEEEeec
Q 016239 265 ASPNMLVLAGMCNAPRGPSFNLWKVDE 291 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~ 291 (392)
.-+++.++..|.+. .+.+|++..
T Consensus 314 tkn~kyiLsSG~DS----~vkLWEi~t 336 (430)
T KOG0640|consen 314 TKNGKYILSSGKDS----TVKLWEIST 336 (430)
T ss_pred ccCCeEEeecCCcc----eeeeeeecC
Confidence 44777766666443 578886543
No 145
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.46 E-value=8.5 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=17.2
Q ss_pred eeeEEECCEEEEEeecccEEEEEECCC
Q 016239 218 LSSALFRGRFYVFGIYSFSVSSFDLKK 244 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~ 244 (392)
.+.+..++.+|+.+. .+.++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 345667888887655 67999999864
No 146
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=70.31 E-value=94 Score=29.00 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=52.0
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEE------eeCCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLI------ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~------~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~ 297 (392)
+|+....|..++.|..|||++++= ...+++.......+++ +-..+.+..+..++ ++.|| |....+-.
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg----~vrIW--d~~~~~~~ 240 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG----SVRIW--DTKLGTCV 240 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCC----CEEEE--EccCceEE
Confidence 788888888889999999988751 1122222111111111 11223222222221 68888 66554422
Q ss_pred ecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC
Q 016239 298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK 341 (392)
Q Consensus 298 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~ 341 (392)
. .+... -....|+--|+.=+|+.|..+..
T Consensus 241 ~--~lsgH-------------T~~VTCvrwGG~gliySgS~Drt 269 (480)
T KOG0271|consen 241 R--TLSGH-------------TASVTCVRWGGEGLIYSGSQDRT 269 (480)
T ss_pred E--EeccC-------------ccceEEEEEcCCceEEecCCCce
Confidence 2 12111 12678888888888888865443
No 147
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=70.11 E-value=49 Score=31.08 Aligned_cols=111 Identities=13% Similarity=0.198 Sum_probs=60.6
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~~ 243 (392)
+|.+.+-||.+. -..++|..++.-...-.-.. + .-.++.. -||.....|+.++.+-++|+.
T Consensus 314 DGSL~~tGGlD~-----------~~RvWDlRtgr~im~L~gH~--k-----~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 314 DGSLAATGGLDS-----------LGRVWDLRTGRCIMFLAGHI--K-----EILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred CCceeeccCccc-----------hhheeecccCcEEEEecccc--c-----ceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 889999999842 23456666665443321111 1 1133333 277787888888888888886
Q ss_pred CCceeecccCCCCcccceeEE-e-eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCC
Q 016239 244 KHVWSEVQTLRPPGVMFSFLI-A-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303 (392)
Q Consensus 244 ~~~W~~i~~~~~~~~~~~~~~-~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p 303 (392)
..+= +-.+|........+. . ..|+.++..+++. +..|| .+..|..+..|.
T Consensus 376 ~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~----t~kiW----s~~~~~~~ksLa 427 (459)
T KOG0272|consen 376 MRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN----TVKIW----STRTWSPLKSLA 427 (459)
T ss_pred cccc--ceecccccchhhheEecccCCeEEEEcccCc----ceeee----cCCCcccchhhc
Confidence 5432 222332111111111 1 2566666666554 68888 456787665543
No 148
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=70.08 E-value=26 Score=32.04 Aligned_cols=67 Identities=10% Similarity=0.314 Sum_probs=41.7
Q ss_pred EEEEEECC-CCceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccceEe-cccCCHH
Q 016239 236 SVSSFDLK-KHVWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE-IAIMPHD 305 (392)
Q Consensus 236 ~i~~yd~~-~~~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~-~~~~p~~ 305 (392)
++..|... ...|..-..+++.....+.+++. +|+|+++..++.. ...||+=.-...+|++ +.+++.-
T Consensus 150 SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g---~rrVYeS~DmG~tWtea~gtlsrV 219 (310)
T PF13859_consen 150 SLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG---RRRVYESGDMGTTWTEALGTLSRV 219 (310)
T ss_dssp EEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS------EEEESSTTSS-EE-TTTTTT-
T ss_pred EEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccc---eEEEEEEcccceehhhccCcccee
Confidence 56778776 67899887777777778889999 8999999876543 3567766566788998 6777754
No 149
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=69.86 E-value=70 Score=27.32 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=14.5
Q ss_pred CEEEEEeecccEEEEEECCCC
Q 016239 225 GRFYVFGIYSFSVSSFDLKKH 245 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~ 245 (392)
+.+++.+...+.+..||..+.
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred CCEEEEEcCCCcEEEEEcccc
Confidence 455555554788999998754
No 150
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=69.48 E-value=1.4e+02 Score=30.61 Aligned_cols=109 Identities=11% Similarity=0.195 Sum_probs=61.0
Q ss_pred eeeEEEC--CEEEEEeecc-cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 218 LSSALFR--GRFYVFGIYS-FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 218 ~~~~~~~--g~ly~~gg~~-~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
.+++.++ |.|.+.|+.. ..|++++.++++--.+-.-...+.. .......+.+++.|.++. ++.+|.. - .
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs-~l~f~~~~~~LaS~SWDk----TVRiW~i--f-~ 509 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS-GLSFSPDGSLLASGSWDK----TVRIWDI--F-S 509 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce-eeEEccccCeEEeccccc----eEEEEEe--e-c
Confidence 5666776 8999999876 5899999999887666443332221 222445666666665544 7888842 2 2
Q ss_pred ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239 295 EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE 336 (392)
Q Consensus 295 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg 336 (392)
+|..+.+++..- .-.+....|--...+++.+++.|=++.-
T Consensus 510 s~~~vEtl~i~s--dvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 510 SSGTVETLEIRS--DVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cCceeeeEeecc--ceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 344444433210 0011111111125667778878777753
No 151
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=69.26 E-value=1.2e+02 Score=29.63 Aligned_cols=100 Identities=12% Similarity=0.240 Sum_probs=53.8
Q ss_pred eeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCC-----CCccccee-EEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 218 LSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLR-----PPGVMFSF-LIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 218 ~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~-----~~~~~~~~-~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
.+.|.+ +|+++..|-..++|..+|. ..|..-+.+. ..+..... ....+|+.++.-|.++ ++.+|-+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~----tLKvWDL 393 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD----TLKVWDL 393 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC----ceeeeec
Confidence 444544 5778655666689999886 4444433322 12222222 3345777766655443 7899966
Q ss_pred ecCc---cceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccc
Q 016239 290 DELS---MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEY 338 (392)
Q Consensus 290 d~~~---~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~ 338 (392)
+.-. ..|+-+ |... - ..-.|+.-+++|.+.|-..
T Consensus 394 rq~kkpL~~~tgL---~t~~----~--------~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 394 RQFKKPLNVRTGL---PTPF----P--------GTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred cccccchhhhcCC---CccC----C--------CCccccCCCceEEEecccc
Confidence 3322 234333 3221 0 1235567788888888643
No 152
>PRK04922 tolB translocation protein TolB; Provisional
Probab=69.22 E-value=1.1e+02 Score=29.38 Aligned_cols=176 Identities=10% Similarity=-0.065 Sum_probs=85.7
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEeecc-eEEeec---C---cceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG-FFFTTT---P---RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH 150 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g-~i~v~g---g---~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~ 150 (392)
.+++.+|..+++...+...+.... .....-+| .|++.. | .+++|.. +++.+++..-.. ..... .+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~lt~~~~--~~~~~-~~--- 299 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTRLTNHFG--IDTEP-TW--- 299 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEECccCCC--Cccce-EE---
Confidence 568888988877766654432211 11122233 454331 2 4778887 565554432211 01111 11
Q ss_pred CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEE
Q 016239 151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYV 229 (392)
Q Consensus 151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~ 229 (392)
..++.+++..... .....++.+|..++..+.+..-. ... ......-+| .|++
T Consensus 300 -----------spDG~~l~f~sd~---------~g~~~iy~~dl~~g~~~~lt~~g---~~~----~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 300 -----------APDGKSIYFTSDR---------GGRPQIYRVAASGGSAERLTFQG---NYN----ARASVSPDGKKIAM 352 (433)
T ss_pred -----------CCCCCEEEEEECC---------CCCceEEEEECCCCCeEEeecCC---CCc----cCEEECCCCCEEEE
Confidence 1113445444322 11236888888888777664211 111 011122244 4555
Q ss_pred Eeecc--cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 230 FGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 230 ~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
..+.. ..|+.+|+.+++...+..... .... ....+|+.+++...... ...+|.++.+..
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~~Lt~~~~--~~~p-~~spdG~~i~~~s~~~g---~~~L~~~~~~g~ 413 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVRTLTPGSL--DESP-SFAPNGSMVLYATREGG---RGVLAAVSTDGR 413 (433)
T ss_pred EECCCCceeEEEEECCCCCeEECCCCCC--CCCc-eECCCCCEEEEEEecCC---ceEEEEEECCCC
Confidence 44322 369999998888776643211 1112 23457776665543321 456777777654
No 153
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=68.86 E-value=3.6 Score=38.56 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=34.9
Q ss_pred cccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCc
Q 016239 9 AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAP 47 (392)
Q Consensus 9 ~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~ 47 (392)
.--.||+|++..|++.|..+++.+.+.+|+.|+.+.-+-
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 334699999999999999999999999999999988664
No 154
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.24 E-value=86 Score=27.74 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=48.3
Q ss_pred EEEEEeCCCC--CeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeE
Q 016239 188 AVEIYDPHSD--SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 188 ~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~ 263 (392)
.+..-|+.++ .|+.+-.. |.. .++.++++- .++|-+.+.++..+.+++ -|.-...... ...+.
T Consensus 34 ~~~avd~~sG~~~We~ilg~----RiE-----~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~v---k~~a~ 100 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAILGV----RIE-----CSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILETV---KVRAQ 100 (354)
T ss_pred eEEEecCCCCcEEeehhhCc----eee-----eeeEEECCE-EEEEEccCcEEEEEecchhheeeeeehhhh---ccceE
Confidence 4556666665 48877543 433 455566665 777888888888777776 4544322111 12223
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
+..++.|+..|.. ....|.+|+.+..
T Consensus 101 ~d~~~glIycgsh------d~~~yalD~~~~~ 126 (354)
T KOG4649|consen 101 CDFDGGLIYCGSH------DGNFYALDPKTYG 126 (354)
T ss_pred EcCCCceEEEecC------CCcEEEecccccc
Confidence 4445555444432 2345555665543
No 155
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.04 E-value=1.1e+02 Score=29.05 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=30.2
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEe
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGM 275 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg 275 (392)
+|.++++|-....+...|.....|+.+........ .......++.+++++.
T Consensus 249 dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l-~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 249 DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRI-QNMGWRADGGLWLLTR 299 (398)
T ss_pred CCCEEEEECCccEEEecCCCCcceEEecCCCccce-eeeeEcCCCCEEEEeC
Confidence 45566665444334455665556998876655333 2222356889998874
No 156
>PTZ00421 coronin; Provisional
Probab=67.65 E-value=1.3e+02 Score=29.60 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred CEEEEEeecccEEEEEECCCCceeecccCCCC-cccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPP-GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~-~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
+.+++.|+.++.|..||+.+.+-... .... ..........++.+++.++.++ .+.+| |+.+.+
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~--l~~h~~~V~sla~spdG~lLatgs~Dg----~IrIw--D~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEV--IKCHSDQITSLEWNLDGSLLCTTSKDK----KLNII--DPRDGT 201 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEE--EcCCCCceEEEEEECCCCEEEEecCCC----EEEEE--ECCCCc
Confidence 35777788889999999987643221 1111 1111111233777777776443 67777 766543
No 157
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=67.32 E-value=1.1e+02 Score=28.62 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCCCCCCcceEEeecceEEeecC---cceEecCC-cCceeec
Q 016239 59 ASPRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQEPRAGSCFIGANGFFFTTTP---RFGFSRIL-NTSWHLT 132 (392)
Q Consensus 59 ~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~g~i~v~gg---~~~ynp~~-~~~W~~~ 132 (392)
+..++.+|+... ...++++|+.+.+ |......-...........+|.||+... .+++|..+ +..|+.-
T Consensus 65 ~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~ 138 (370)
T COG1520 65 ADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRN 138 (370)
T ss_pred EeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEe
Confidence 455667776511 1368999999887 7543221011111223444788888753 47888841 2378754
Q ss_pred CCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCC--CCeecCCCCCCCCC
Q 016239 133 SPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHS--DSWELCPPLPADFR 210 (392)
Q Consensus 133 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~ 210 (392)
.+.. ++..-..++. ++.+|+... ...+...|..+ ..|+.-.+.+...+
T Consensus 139 ~~~~-~~~~~~~v~~-----------------~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 139 VGGS-PYYASPPVVG-----------------DGTVYVGTD------------DGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred cCCC-eEEecCcEEc-----------------CcEEEEecC------------CCeEEEEEccCCcEEEEEecCCccccc
Confidence 3331 2222223333 666666631 11466666654 35774332211112
Q ss_pred CCCCccceeeEEECCEEEEEeec-ccEEEEEECCCC--ceee
Q 016239 211 SGYSSQYLSSALFRGRFYVFGIY-SFSVSSFDLKKH--VWSE 249 (392)
Q Consensus 211 ~~~~~~~~~~~~~~g~ly~~gg~-~~~i~~yd~~~~--~W~~ 249 (392)
.. ...+..++.+|+-... ...++++|++++ .|+.
T Consensus 189 ~~-----~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 189 IY-----GSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cc-----cCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 21 2333667788876432 447999999766 5764
No 158
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=66.05 E-value=1.5e+02 Score=31.09 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=25.0
Q ss_pred eeeEEECCEEEEEeecccEEEEEECCCC--ceeecc
Q 016239 218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQ 251 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~ 251 (392)
.+.+.++|+||+... .+.|+++|..++ .|+.-.
T Consensus 188 ~TPlvvgg~lYv~t~-~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECC-CCeEEEEECCCCcEEEEEcC
Confidence 567788999999866 357899998765 677643
No 159
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=65.95 E-value=2.1e+02 Score=31.34 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=40.1
Q ss_pred CEEEEEeecccEEEEEECCCCceeeccc--C--CC--------C------ccc--ceeEEeeCCeEEEEEeecCCCCCce
Q 016239 225 GRFYVFGIYSFSVSSFDLKKHVWSEVQT--L--RP--------P------GVM--FSFLIASPNMLVLAGMCNAPRGPSF 284 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~--~--~~--------~------~~~--~~~~~~~~g~l~v~gg~~~~~~~~~ 284 (392)
+.||+.....+.|.+||+.++.-..+.. . +. . ... ....+..+|.|||.... +.
T Consensus 752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~ 825 (1057)
T PLN02919 752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NH 825 (1057)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CC
Confidence 4599998888899999998765332210 0 00 0 000 11223447889888643 23
Q ss_pred eEEEeecCccceEecc
Q 016239 285 NLWKVDELSMEFSEIA 300 (392)
Q Consensus 285 ~v~~~d~~~~~W~~~~ 300 (392)
.|.++|+.+.....+.
T Consensus 826 rIrviD~~tg~v~tia 841 (1057)
T PLN02919 826 KIKKLDPATKRVTTLA 841 (1057)
T ss_pred EEEEEECCCCeEEEEe
Confidence 4445588777665544
No 160
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=65.72 E-value=1.1e+02 Score=27.99 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=40.7
Q ss_pred eeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeec
Q 016239 218 LSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCN 277 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~ 277 (392)
++.-..+|+||+.....+.+..+|+++++.+.+...|.-.++.. -. |.+.++|.+.
T Consensus 206 hSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~---f~-G~llvVgmSk 261 (335)
T TIGR03032 206 HSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLA---FA-GDFAFVGLSK 261 (335)
T ss_pred cCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccc---ee-CCEEEEEecc
Confidence 34445589999998888899999999999999977665333322 22 7777777543
No 161
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=65.06 E-value=1.3e+02 Score=28.70 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=51.3
Q ss_pred eeeEEECCEEEEEeecccEEEEEECCCCc--eee-ccc-----CCC---CcccceeEEeeCCeEEEEEeecCCCCCceeE
Q 016239 218 LSSALFRGRFYVFGIYSFSVSSFDLKKHV--WSE-VQT-----LRP---PGVMFSFLIASPNMLVLAGMCNAPRGPSFNL 286 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~~--W~~-i~~-----~~~---~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v 286 (392)
-+++++|..-|+.|+..+.|.-+++.+.+ +.. ++. +.+ +....+.++..+..|+..|..++ .+.+
T Consensus 331 dcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G----~vrL 406 (479)
T KOG0299|consen 331 DCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG----CVRL 406 (479)
T ss_pred eeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC----ceEE
Confidence 56778899999999998988888876653 211 111 111 11222333444677777775443 7899
Q ss_pred EEeecCccceEecccCCHH
Q 016239 287 WKVDELSMEFSEIAIMPHD 305 (392)
Q Consensus 287 ~~~d~~~~~W~~~~~~p~~ 305 (392)
|.-......-..+..+|-.
T Consensus 407 W~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 407 WKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EEecCCccccceeeecccc
Confidence 9776655556666666643
No 162
>PRK02889 tolB translocation protein TolB; Provisional
Probab=64.84 E-value=1.3e+02 Score=28.75 Aligned_cols=102 Identities=9% Similarity=-0.041 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeec--ccEEEEEECCCCceeecccCCCCcccceeE
Q 016239 187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFL 263 (392)
Q Consensus 187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~ 263 (392)
..++.+|..++..+.+..-... .. .....-+|+ |++.... ...|+.+|..+++.+.+.... ...... .
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~-~~------~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~-~ 334 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGI-DT------EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSP-R 334 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCC-Cc------CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCce-E
Confidence 3688888877665555431111 11 111222454 4443322 236888888777666553211 111112 2
Q ss_pred EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
...+|+.+++...... ...|+.+|..+.+.+.+.
T Consensus 335 ~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 335 ISPDGKLLAYISRVGG---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ECCCCCEEEEEEccCC---cEEEEEEECCCCCeEEcc
Confidence 3335655444332211 346777788777766654
No 163
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=64.81 E-value=1.4e+02 Score=29.08 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK 244 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~ 244 (392)
+|..+++|-. ...+++||.++..= +..+... . ....++...++.+...|..++.|.-+|...
T Consensus 228 ~G~~LavG~~-----------~g~v~iwD~~~~k~--~~~~~~~-h----~~rvg~laW~~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 228 DGSHLAVGTS-----------DGTVQIWDVKEQKK--TRTLRGS-H----ASRVGSLAWNSSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCCEEEEeec-----------CCeEEEEehhhccc--cccccCC-c----CceeEEEeccCceEEEecCCCcEEEEEEec
Confidence 6778888754 22699999765432 2222110 0 112566677899999999999999999865
Q ss_pred CceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEE
Q 016239 245 HVWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLW 287 (392)
Q Consensus 245 ~~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~ 287 (392)
.+=.. ..+......-+.+.-. ++..+..||.++ .+.||
T Consensus 290 ~~~~~-~~~~~H~qeVCgLkws~d~~~lASGgnDN----~~~Iw 328 (484)
T KOG0305|consen 290 SQHVV-STLQGHRQEVCGLKWSPDGNQLASGGNDN----VVFIW 328 (484)
T ss_pred chhhh-hhhhcccceeeeeEECCCCCeeccCCCcc----ceEec
Confidence 43111 1122233344444433 555556666543 56777
No 164
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=64.61 E-value=1.3e+02 Score=28.37 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeE-EECCE-EEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSA-LFRGR-FYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~g~-ly~~gg~~~~i~~yd~ 242 (392)
+.++|+.+.. ..+-++|..+++ .+...+.. ... .+.+ .-+|+ +|+.....+.+..+|.
T Consensus 48 gr~~yv~~rd------------g~vsviD~~~~~--~v~~i~~G-~~~-----~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 48 GRYLYVANRD------------GTVSVIDLATGK--VVATIKVG-GNP-----RGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp SSEEEEEETT------------SEEEEEETTSSS--EEEEEE-S-SEE-----EEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred CCEEEEEcCC------------CeEEEEECCccc--EEEEEecC-CCc-----ceEEEcCCCCEEEEEecCCCceeEecc
Confidence 5678887532 158899987776 44433333 111 2222 33564 5555556789999998
Q ss_pred CCCce-eeccc--CCC--CcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 243 KKHVW-SEVQT--LRP--PGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 243 ~~~~W-~~i~~--~~~--~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
++.+= +.++. .+. ......+++ ......|++.-.+ ..+||..|....
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~ 160 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDP 160 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTS
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccc
Confidence 77543 22322 111 111122333 3456667766433 467888875543
No 165
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=63.95 E-value=1.8e+02 Score=29.87 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=50.8
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM 302 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~ 302 (392)
+|.+.+.|+.++.|-+||..+...-..=..+... ..++ +...|+.++...-++ ++..| |...-.=-+--..
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~--Vt~v~f~~~g~~llssSLDG----tVRAw--DlkRYrNfRTft~ 432 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG--VTAVQFTARGNVLLSSSLDG----TVRAW--DLKRYRNFRTFTS 432 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEeccCCCc--eEEEEEEecCCEEEEeecCC----eEEee--eecccceeeeecC
Confidence 7888888998899999998776433221212212 1221 223555555433222 57777 4433221111122
Q ss_pred CHHHHHhhcCCcccCccceeEEEEeC--CEEEEEec
Q 016239 303 PHDFLYSLVDTEEDDKFASLKCVGLG--NLIYVFNE 336 (392)
Q Consensus 303 p~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~gg 336 (392)
|.+ ..++|++++ |.|.+.|+
T Consensus 433 P~p--------------~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 433 PEP--------------IQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred CCc--------------eeeeEEEEcCCCCEEEeec
Confidence 332 378888888 88988886
No 166
>PF13013 F-box-like_2: F-box-like domain
Probab=63.84 E-value=6.1 Score=29.75 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=25.3
Q ss_pred ccCCcHHHHHHHHhhCChhhHHHhhccch
Q 016239 10 FTTLSTDITERILSLLPIPTLIRASSVCK 38 (392)
Q Consensus 10 ~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k 38 (392)
+.+||+||++.|+..+...++......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67799999999999999888877777776
No 167
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.68 E-value=1.6e+02 Score=29.57 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=55.0
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--------CCCCCCCCCCCccceeeEEECCEEEEEeecccE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--------PLPADFRSGYSSQYLSSALFRGRFYVFGIYSFS 236 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--------~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~ 236 (392)
+..+++.||.+. .+.+||..+..=+.+. +++.+.+.+ .+.-+.--+|.+++-||..+.
T Consensus 129 ~~~lvaSgGLD~-----------~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s---iYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 129 NNELVASGGLDR-----------KIFLWDINTGTATLVASFNNVTVNSLGSGPKDS---IYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred CceeEEecCCCc-----------cEEEEEccCcchhhhhhccccccccCCCCCccc---eeeeecCCcceEEEecCcccc
Confidence 778888998731 4677776655322221 222111221 111122224678888999999
Q ss_pred EEEEECCCCceeecccCCCCcccc--eeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 237 VSSFDLKKHVWSEVQTLRPPGVMF--SFLIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 237 i~~yd~~~~~W~~i~~~~~~~~~~--~~~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
|..||+.+.+ ++-.+.. ...+ ..++.-+|.=.+.++.+. .+.+|.+
T Consensus 195 lr~wDprt~~--kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDg----tIrlWdL 242 (735)
T KOG0308|consen 195 LRLWDPRTCK--KIMKLRG-HTDNVRVLLVNDDGTRLLSASSDG----TIRLWDL 242 (735)
T ss_pred eEEecccccc--ceeeeec-cccceEEEEEcCCCCeEeecCCCc----eEEeeec
Confidence 9999998874 2211111 1111 122333565566655443 6777744
No 168
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=63.37 E-value=55 Score=29.35 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=43.4
Q ss_pred CCEEEEEeecccEEEEEECCCCceee-----------cccCCCCccccee----EEeeCCeEEEEEeecCCCCCceeEEE
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----------VQTLRPPGVMFSF----LIASPNMLVLAGMCNAPRGPSFNLWK 288 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----------i~~~~~~~~~~~~----~~~~~g~l~v~gg~~~~~~~~~~v~~ 288 (392)
.|...+-||.++.|.+||+++-+=.+ +....+..+.++. ..-++.-+|..+..+. .+.||
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh----tlKVW- 129 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH----TLKVW- 129 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc----eEEEe-
Confidence 46677778888999999997653111 1111111111111 1123555666554332 68899
Q ss_pred eecCccceEecccCCHHHH
Q 016239 289 VDELSMEFSEIAIMPHDFL 307 (392)
Q Consensus 289 ~d~~~~~W~~~~~~p~~~~ 307 (392)
|..+.+=...-.|+..++
T Consensus 130 -DtnTlQ~a~~F~me~~VY 147 (397)
T KOG4283|consen 130 -DTNTLQEAVDFKMEGKVY 147 (397)
T ss_pred -ecccceeeEEeecCceee
Confidence 877766555556777654
No 169
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=63.20 E-value=2.1e+02 Score=30.43 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=85.5
Q ss_pred CCeEEEEec-eeecCcccccccceEEEEEeCCC-CCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGG-VRFIGGLVDIEDRLAVEIYDPHS-DSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG-~~~~~~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~ 242 (392)
.+..|++|- .......... ...+.+|.... ++-+.++.+-.. .. ..+.+.+||++.. |....|--|+.
T Consensus 786 ~~t~~vVGT~~v~Pde~ep~--~GRIivfe~~e~~~L~~v~e~~v~-Ga-----v~aL~~fngkllA--~In~~vrLye~ 855 (1096)
T KOG1897|consen 786 PNTYYVVGTGLVYPDENEPV--NGRIIVFEFEELNSLELVAETVVK-GA-----VYALVEFNGKLLA--GINQSVRLYEW 855 (1096)
T ss_pred CceEEEEEEEeeccCCCCcc--cceEEEEEEecCCceeeeeeeeec-cc-----eeehhhhCCeEEE--ecCcEEEEEEc
Confidence 478888874 3211111111 22344444433 666666654432 11 1455667888764 34457788887
Q ss_pred CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCcccee
Q 016239 243 KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASL 322 (392)
Q Consensus 243 ~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~ 322 (392)
.+++=-.+..-...+...-.+-+.+++|++..- +.++.+..|+...+...++++-=.+ ++..
T Consensus 856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-----m~Sitll~y~~~eg~f~evArD~~p-------------~Wmt 917 (1096)
T KOG1897|consen 856 TTERELRIECNISNPIIALDLQVKGDEIAVGDL-----MRSITLLQYKGDEGNFEEVARDYNP-------------NWMT 917 (1096)
T ss_pred cccceehhhhcccCCeEEEEEEecCcEEEEeec-----cceEEEEEEeccCCceEEeehhhCc-------------ccee
Confidence 766211111111111111223345777776542 2278888888888888887762222 3467
Q ss_pred EEEEeCCEEEEEeccccCCCCeEEEEe--ecCCCc
Q 016239 323 KCVGLGNLIYVFNEEYHKKYPACVCEI--GTESDK 355 (392)
Q Consensus 323 ~~~~~~~~i~v~gg~~~~~~~~~~~~~--d~~~~~ 355 (392)
++...++..|+.+- ..+.+.++++ |..++.
T Consensus 918 aveil~~d~ylgae---~~gNlf~v~~d~~~~td~ 949 (1096)
T KOG1897|consen 918 AVEILDDDTYLGAE---NSGNLFTVRKDSDATTDE 949 (1096)
T ss_pred eEEEecCceEEeec---ccccEEEEEecCCCCchh
Confidence 88889999888663 3455666666 444443
No 170
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=63.05 E-value=1.3e+02 Score=27.90 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
.+.++.+|..++.+|+|...++.-.++-.-+..+.... -+.-+|+..+.|..+. ++.+| |+.+.
T Consensus 159 ~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G-~f~pdGKr~~tgy~dg----ti~~W--n~ktg 222 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG-EFIPDGKRILTGYDDG----TIIVW--NPKTG 222 (399)
T ss_pred cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc-cccCCCceEEEEecCc----eEEEE--ecCCC
Confidence 36688888888999999998863333322122222211 1334677777775543 67888 66654
No 171
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.04 E-value=1.2e+02 Score=27.56 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=20.4
Q ss_pred eeeEEECCEEEEEeecccEEEEEECCC
Q 016239 218 LSSALFRGRFYVFGIYSFSVSSFDLKK 244 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~ 244 (392)
..+...++.-...||....|..+|..+
T Consensus 212 l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 212 LCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred eeeeecCCceEEEecCCceEEEeccCC
Confidence 556666777777788778888888876
No 172
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=62.62 E-value=38 Score=31.04 Aligned_cols=88 Identities=14% Similarity=0.302 Sum_probs=56.1
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeC
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASP 267 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~ 267 (392)
++.+++..|... +..+... +-+ -++.-++|++.+.|..+++|-.+|.+.+.--.+-.-.. .....+-.+
T Consensus 341 TikvW~~st~ef--vRtl~gH-kRG-----IAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE---eLvRciRFd 409 (499)
T KOG0281|consen 341 TIKVWSTSTCEF--VRTLNGH-KRG-----IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELVRCIRFD 409 (499)
T ss_pred eEEEEeccceee--ehhhhcc-ccc-----ceehhccCeEEEecCCCceEEEEeccccHHHHHHhchH---Hhhhheeec
Confidence 566666555433 3223332 222 56667899999999999999999998876544322111 112235668
Q ss_pred CeEEEEEeecCCCCCceeEEEee
Q 016239 268 NMLVLAGMCNAPRGPSFNLWKVD 290 (392)
Q Consensus 268 g~l~v~gg~~~~~~~~~~v~~~d 290 (392)
++=+|.|++++ ++.||-+.
T Consensus 410 ~krIVSGaYDG----kikvWdl~ 428 (499)
T KOG0281|consen 410 NKRIVSGAYDG----KIKVWDLQ 428 (499)
T ss_pred Cceeeeccccc----eEEEEecc
Confidence 88888887765 78999553
No 173
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=62.10 E-value=1.4e+02 Score=28.11 Aligned_cols=106 Identities=7% Similarity=-0.024 Sum_probs=47.2
Q ss_pred EEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc-CCHHHHHhhcCCc
Q 016239 236 SVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI-MPHDFLYSLVDTE 314 (392)
Q Consensus 236 ~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~-~p~~~~~~~~~~~ 314 (392)
.|...|+.+++.+.+-.-.. -..+...--.+..++++..-..-......||..+.+....+++.. ++.+
T Consensus 169 ~i~~idl~tG~~~~v~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e--------- 238 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGE--------- 238 (386)
T ss_dssp EEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTE---------
T ss_pred eEEEEECCCCceeEEEecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCc---------
Confidence 78888998888777643221 111211222355665554322222224578999877666555533 3322
Q ss_pred ccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239 315 EDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK 355 (392)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~ 355 (392)
...|.....+|..+.+-+...+...-.+..+|+++.+
T Consensus 239 ----~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 239 ----SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp ----EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred ----ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 2366666666655555432223333344556888876
No 174
>PRK04043 tolB translocation protein TolB; Provisional
Probab=61.51 E-value=1.6e+02 Score=28.34 Aligned_cols=175 Identities=8% Similarity=-0.068 Sum_probs=91.2
Q ss_pred CceeeeeCCCCceeeCCCCCCCCCcceEEeecc-eEEeec------CcceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239 78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG-FFFTTT------PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH 150 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g-~i~v~g------g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~ 150 (392)
.+++.+|..+++-..+...+... .....+-+| .|.+.. ..|++|.. +++++++...+.. .... .
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~LT~~~~~--d~~p-~---- 283 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQITNYPGI--DVNG-N---- 283 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEEcccCCCc--cCcc-E----
Confidence 47899999888766665432211 111122244 444331 24788887 6777776544321 1111 1
Q ss_pred CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEE
Q 016239 151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYV 229 (392)
Q Consensus 151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~ 229 (392)
|.+++.+|+..... .....++++|..++..+.+..- . .. .....-+|+ |.+
T Consensus 284 ----------~SPDG~~I~F~Sdr---------~g~~~Iy~~dl~~g~~~rlt~~--g-~~------~~~~SPDG~~Ia~ 335 (419)
T PRK04043 284 ----------FVEDDKRIVFVSDR---------LGYPNIFMKKLNSGSVEQVVFH--G-KN------NSSVSTYKNYIVY 335 (419)
T ss_pred ----------ECCCCCEEEEEECC---------CCCceEEEEECCCCCeEeCccC--C-Cc------CceECCCCCEEEE
Confidence 22225567666432 1224788899988887666421 1 11 112222444 333
Q ss_pred Eeecc--------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 230 FGIYS--------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 230 ~gg~~--------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
..... ..|+.+|+.++.++.+..... ..... ..-+|+.+++..... ....++.++.+.+.
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~~p~-~SPDG~~I~f~~~~~---~~~~L~~~~l~g~~ 403 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV--NQFPR-FSSDGGSIMFIKYLG---NQSALGIIRLNYNK 403 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC--cCCeE-ECCCCCEEEEEEccC---CcEEEEEEecCCCe
Confidence 32211 479999999998887755321 12222 445676555443221 14567777776654
No 175
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=60.86 E-value=1.3e+02 Score=27.13 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~i~~yd~~ 243 (392)
+.+.|+.||.+. ...++|.....-.+. ++.. ... ..++.++ +|.-+..|..+...-.||+.
T Consensus 198 ~~ntFvSg~cD~-----------~aklWD~R~~~c~qt--F~gh-esD----INsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 198 DGNTFVSGGCDK-----------SAKLWDVRSGQCVQT--FEGH-ESD----INSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred CCCeEEeccccc-----------ceeeeeccCcceeEe--eccc-ccc----cceEEEccCCCeeeecCCCceeEEEeec
Confidence 778999998742 455667666532221 1111 111 1222232 67788888877888999998
Q ss_pred CCceeec-ccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecC
Q 016239 244 KHVWSEV-QTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDEL 292 (392)
Q Consensus 244 ~~~W~~i-~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~ 292 (392)
+++=-.+ .......-.........|+|++.|+.+. ...|| |.-
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~----~c~vW--Dtl 303 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF----TCNVW--DTL 303 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCC----ceeEe--ecc
Confidence 8742222 2222211112233556899998886543 56677 643
No 176
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.82 E-value=1.7e+02 Score=28.47 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=53.1
Q ss_pred EEEEEeCCCC--CeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe
Q 016239 188 AVEIYDPHSD--SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA 265 (392)
Q Consensus 188 ~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~ 265 (392)
++.++|...+ .-+.+...... . +..+..-.|.+.+.|+.++.|..+|..+.+-...-...... .......
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~-v------~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~-is~~~f~ 297 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTY-V------TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG-ISGLAFS 297 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCc-e------EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc-eEEEEEC
Confidence 6888888443 22333332222 1 12222335789999999999999999985443332222111 1122234
Q ss_pred eCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 266 SPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 266 ~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
-++.+++.+..+. .+.|| |..+..
T Consensus 298 ~d~~~l~s~s~d~----~i~vw--d~~~~~ 321 (456)
T KOG0266|consen 298 PDGNLLVSASYDG----TIRVW--DLETGS 321 (456)
T ss_pred CCCCEEEEcCCCc----cEEEE--ECCCCc
Confidence 4777877774332 67888 766554
No 177
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.51 E-value=75 Score=27.14 Aligned_cols=97 Identities=11% Similarity=0.003 Sum_probs=62.1
Q ss_pred eeeEEECCEEEEEeecc--cEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239 218 LSSALFRGRFYVFGIYS--FSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS 293 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~--~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~ 293 (392)
.+....+|++|.-.|.- ..|.++|+.+. .|++- .++.....-.++..++.+|.....+ ..-+.||..
T Consensus 49 QGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~--l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~- 119 (262)
T COG3823 49 QGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEK--LAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDAD- 119 (262)
T ss_pred cceeeeCCEEEEeccccccceeEEEeccCceEEEEee--cCCccccccceeeccceEEEEEecc------ceeEEEChH-
Confidence 34456678888887754 37899999855 45443 2223445556789999999987643 345566765
Q ss_pred cceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239 294 MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE 337 (392)
Q Consensus 294 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~ 337 (392)
+.+++...+.+.- ..+.+..+..|....|.
T Consensus 120 -t~~~lg~~~y~Ge-------------GWgLt~d~~~LimsdGs 149 (262)
T COG3823 120 -TLEELGRFSYEGE-------------GWGLTSDDKNLIMSDGS 149 (262)
T ss_pred -HhhhhcccccCCc-------------ceeeecCCcceEeeCCc
Confidence 4455655554421 56777777777777663
No 178
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=59.88 E-value=53 Score=30.27 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=22.4
Q ss_pred eeCCeEEEEEeec---CCCCCceeEEEeecCccceEecccCC
Q 016239 265 ASPNMLVLAGMCN---APRGPSFNLWKVDELSMEFSEIAIMP 303 (392)
Q Consensus 265 ~~~g~l~v~gg~~---~~~~~~~~v~~~d~~~~~W~~~~~~p 303 (392)
.-.++||++-... ....+..+||+||..+.+ ++.+++
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~ 286 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIP 286 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEe
Confidence 3478999864221 122346899999998874 444444
No 179
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=57.67 E-value=10 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.6
Q ss_pred CcccCCcHHHHHHHHhhCChhhHHH
Q 016239 8 SAFTTLSTDITERILSLLPIPTLIR 32 (392)
Q Consensus 8 ~~~~~Lp~dl~~~iL~rLP~~~l~~ 32 (392)
..|..||.|+...||+.|.-+++..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5799999999999999999988764
No 180
>PTZ00334 trans-sialidase; Provisional
Probab=57.49 E-value=1.4e+02 Score=31.00 Aligned_cols=66 Identities=8% Similarity=0.141 Sum_probs=46.5
Q ss_pred EEEEEECCCCceeecccCCCCcccceeEEeeC-CeEEEEEeecCCCCCceeEEEeecCccceEec-ccCCH
Q 016239 236 SVSSFDLKKHVWSEVQTLRPPGVMFSFLIASP-NMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI-AIMPH 304 (392)
Q Consensus 236 ~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~-g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~-~~~p~ 304 (392)
++..|...+..|..-..+++.....+.+++.+ |+|+++..++.. ...||+=.-...+|++- .+++.
T Consensus 288 slIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG---~RrVYES~DmG~tWtEAlGTLsr 355 (780)
T PTZ00334 288 SLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDDG---RRRVYESGDKGDSWTEALGTLSR 355 (780)
T ss_pred EEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCCC---CEEEEEECCCCCChhhCCCccce
Confidence 56778777778977666777667778889995 999998876542 34677655566789863 44543
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=57.11 E-value=1.4e+02 Score=26.25 Aligned_cols=65 Identities=9% Similarity=0.156 Sum_probs=37.8
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE 298 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~ 298 (392)
.+.++..|| ++.++..|+++++.+..-.-.. . ..+.++. .+++|+ .|+-++ ...|| |..+.+-.+
T Consensus 126 enSi~~AgG-D~~~y~~dlE~G~i~r~~rGHt-D-YvH~vv~R~~~~qil-sG~EDG----tvRvW--d~kt~k~v~ 192 (325)
T KOG0649|consen 126 ENSILFAGG-DGVIYQVDLEDGRIQREYRGHT-D-YVHSVVGRNANGQIL-SGAEDG----TVRVW--DTKTQKHVS 192 (325)
T ss_pred CCcEEEecC-CeEEEEEEecCCEEEEEEcCCc-c-eeeeeeecccCccee-ecCCCc----cEEEE--eccccceeE
Confidence 467888776 4689999999998877532222 1 1222221 244444 333222 78899 777665443
No 182
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=55.31 E-value=1.8e+02 Score=27.16 Aligned_cols=75 Identities=8% Similarity=-0.017 Sum_probs=40.1
Q ss_pred CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeecC-------------cceEecCCc
Q 016239 61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTTP-------------RFGFSRILN 126 (392)
Q Consensus 61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~gg-------------~~~ynp~~~ 126 (392)
...++|+....... ..+.+..+|..+.+- +..++.....+.+.+- +..+|+... +.++|+. +
T Consensus 11 ~~~~v~V~d~~~~~-~~~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t 86 (352)
T TIGR02658 11 DARRVYVLDPGHFA-ATTQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-T 86 (352)
T ss_pred CCCEEEEECCcccc-cCceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc-c
Confidence 45567776443211 127789999887553 3333332222234443 567888754 2789988 4
Q ss_pred Cce-eecCCCCcCc
Q 016239 127 TSW-HLTSPLRFSR 139 (392)
Q Consensus 127 ~~W-~~~~~~~~~r 139 (392)
.+- .+++-.+.||
T Consensus 87 ~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 87 HLPIADIELPEGPR 100 (352)
T ss_pred CcEEeEEccCCCch
Confidence 433 3444334444
No 183
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.25 E-value=1.4e+02 Score=26.13 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=29.8
Q ss_pred EEEECCCCceeecccCCC-CcccceeEEeeCCeE-EEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239 238 SSFDLKKHVWSEVQTLRP-PGVMFSFLIASPNML-VLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM 302 (392)
Q Consensus 238 ~~yd~~~~~W~~i~~~~~-~~~~~~~~~~~~g~l-~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~ 302 (392)
+.-+-+.+.|+.....+. ....... -..-|.+ -|.||.+ .+.+|+=+. ..+|.++...
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~vS-WS~sGn~LaVs~GdN-----kvtlwke~~-~Gkw~~v~~~ 297 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRVS-WSLSGNILAVSGGDN-----KVTLWKENV-DGKWEEVGEV 297 (299)
T ss_pred EEecCccCcccccccccCCcceEEEE-EeccccEEEEecCCc-----EEEEEEeCC-CCcEEEcccc
Confidence 344556678876433222 2222222 3334444 4555533 678886443 3479988653
No 184
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=53.10 E-value=1.6e+02 Score=25.91 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=35.6
Q ss_pred CEEEEEeecccEEEEEECCCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
..=.+.|..++.|.++|+.++.......+... .....+ +..+|.+.+..-..+ .-.+|++
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG----~cyvW~l 196 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKG----NCYVWRL 196 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCC-cceeeEEEcCCCcEEEEecCCc----cEEEEEc
Confidence 34445577778999999999987765444332 222223 344666665543222 4567765
No 185
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=52.64 E-value=1.5e+02 Score=29.50 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=65.6
Q ss_pred EEEEEECCCCceeecccC--CCCcccceeEEeeCCeEEEEEeec-----CCCCCceeEEEeecCccceEecccCCHHHHH
Q 016239 236 SVSSFDLKKHVWSEVQTL--RPPGVMFSFLIASPNMLVLAGMCN-----APRGPSFNLWKVDELSMEFSEIAIMPHDFLY 308 (392)
Q Consensus 236 ~i~~yd~~~~~W~~i~~~--~~~~~~~~~~~~~~g~l~v~gg~~-----~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~ 308 (392)
.|..|+....+.+....- +..-...-+|-+.+|.|-|+-... ........|++||...+.--+++.+-..
T Consensus 249 ~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la~g--- 325 (521)
T PF09826_consen 249 TIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLAPG--- 325 (521)
T ss_pred EEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccCCC---
Confidence 677888877766654332 221122334678899997776432 2233468999998655544444443221
Q ss_pred hhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCc
Q 016239 309 SLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDK 355 (392)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~ 355 (392)
| ..+++-.+|++.|++-- .......++++ ||+.-+
T Consensus 326 -----E-----~IysvRF~Gd~~Y~VTF--rqvDPLfviDLsdP~~P~ 361 (521)
T PF09826_consen 326 -----E-----RIYSVRFMGDRAYLVTF--RQVDPLFVIDLSDPANPK 361 (521)
T ss_pred -----c-----eEEEEEEeCCeEEEEEE--eecCceEEEECCCCCCCc
Confidence 1 37888899999999984 44566777888 776544
No 186
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.16 E-value=1e+02 Score=31.30 Aligned_cols=60 Identities=22% Similarity=0.411 Sum_probs=39.2
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
+|+-...|+..+.|..||..+.+- +..+.. .......-...+|.++++||.+. ++.+|-+
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn----sV~lWD~ 648 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADN----SVRLWDL 648 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCC----eEEEEEc
Confidence 677777888889999999987642 111111 22233333455899999887554 7889944
No 187
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=51.11 E-value=2.5e+02 Score=27.53 Aligned_cols=94 Identities=11% Similarity=0.129 Sum_probs=47.2
Q ss_pred CCEEEEEeecccEEEEEECCCCce-eecccCCC-CcccceeEEeeCC-eEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVW-SEVQTLRP-PGVMFSFLIASPN-MLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W-~~i~~~~~-~~~~~~~~~~~~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
+|..|+..|.++.++.||-.+..- .++..-.. .+..++..-.-++ ++.-+++. .+..|| |..+++-.+.-
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt~KIW--dVs~~slv~t~ 273 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KTIKIW--DVSTNSLVSTW 273 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ceEEEE--EeeccceEEEe
Confidence 577777777777888888777643 22322111 1111111001122 23323221 268899 77776544444
Q ss_pred cCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239 301 IMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN 335 (392)
Q Consensus 301 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 335 (392)
.|+.... -...+|+..++.|..+.
T Consensus 274 ~~~~~v~-----------dqqvG~lWqkd~lItVS 297 (603)
T KOG0318|consen 274 PMGSTVE-----------DQQVGCLWQKDHLITVS 297 (603)
T ss_pred ecCCchh-----------ceEEEEEEeCCeEEEEE
Confidence 4444422 12567777777776654
No 188
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=50.99 E-value=1.5e+02 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=15.9
Q ss_pred CEEEEEeecccEEEEEECCCCc
Q 016239 225 GRFYVFGIYSFSVSSFDLKKHV 246 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~~ 246 (392)
+.+++.++..+.+..||..+.+
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCce
Confidence 5666666657899999987643
No 189
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=50.92 E-value=2.2e+02 Score=26.93 Aligned_cols=139 Identities=14% Similarity=0.156 Sum_probs=69.1
Q ss_pred CCceeeeeCCCC-----ceeeCCCCCCCCCcceEEeecceEEeecC-------cceEecCCcC--cee-ecCCCCcCccC
Q 016239 77 NNQSFAFDPASN-----SWFHLPPAQEPRAGSCFIGANGFFFTTTP-------RFGFSRILNT--SWH-LTSPLRFSRIN 141 (392)
Q Consensus 77 ~~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~g~i~v~gg-------~~~ynp~~~~--~W~-~~~~~~~~r~~ 141 (392)
.++++..|.... .|..+.+-... ..+.+...++.+|+... +..++..... .|. .+.+-.....-
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 367888888764 56655332221 12234445888887643 2455544111 355 33333222223
Q ss_pred ceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC-CCCCCCCCCCCccceee
Q 016239 142 PLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP-PLPADFRSGYSSQYLSS 220 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~ 220 (392)
..+.+. ++++++..-. .....+.+||.. ..|.... ++|.. .. ...
T Consensus 330 ~~~~~~-----------------~~~Lvl~~~~---------~~~~~l~v~~~~-~~~~~~~~~~p~~-g~------v~~ 375 (414)
T PF02897_consen 330 EDVSLF-----------------KDYLVLSYRE---------NGSSRLRVYDLD-DGKESREIPLPEA-GS------VSG 375 (414)
T ss_dssp EEEEEE-----------------TTEEEEEEEE---------TTEEEEEEEETT--TEEEEEEESSSS-SE------EEE
T ss_pred EEEEEE-----------------CCEEEEEEEE---------CCccEEEEEECC-CCcEEeeecCCcc-eE------Eec
Confidence 334444 6777776433 234578899987 2333332 33322 10 111
Q ss_pred EEE---CCE-EEEEeecc--cEEEEEECCCCceeec
Q 016239 221 ALF---RGR-FYVFGIYS--FSVSSFDLKKHVWSEV 250 (392)
Q Consensus 221 ~~~---~g~-ly~~gg~~--~~i~~yd~~~~~W~~i 250 (392)
... .+. .|.+.+.. ..++.||+.+++.+.+
T Consensus 376 ~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 376 VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 111 123 44445543 5899999999987665
No 190
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=50.42 E-value=1.8e+02 Score=25.65 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=36.2
Q ss_pred CEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCH
Q 016239 225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPH 304 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~ 304 (392)
++-++.....+.|-.+|..+++= +..+.........=+..+|+++.+.. ..++..| |..+-.--+--.||.
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~--v~sL~~~s~VtSlEvs~dG~ilTia~-----gssV~Fw--daksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTE--VQSLEFNSPVTSLEVSQDGRILTIAY-----GSSVKFW--DAKSFGLLKSYKMPC 225 (334)
T ss_pred CceEEeeccCCceEEEEeccCcE--EEEEecCCCCcceeeccCCCEEEEec-----CceeEEe--ccccccceeeccCcc
Confidence 33333334456777777777642 22221111111222445788877652 1267788 665443333344676
Q ss_pred HH
Q 016239 305 DF 306 (392)
Q Consensus 305 ~~ 306 (392)
.+
T Consensus 226 nV 227 (334)
T KOG0278|consen 226 NV 227 (334)
T ss_pred cc
Confidence 64
No 191
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=50.38 E-value=1.8e+02 Score=25.57 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=78.7
Q ss_pred CCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC---ceeecccCCC--------CcccceeEE
Q 016239 196 SDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH---VWSEVQTLRP--------PGVMFSFLI 264 (392)
Q Consensus 196 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~---~W~~i~~~~~--------~~~~~~~~~ 264 (392)
.+.|...-.+|.+++. .+-|+.+|.+|.-.+.+..|..||+.+. .+..++.+.- .+...--++
T Consensus 55 ~~~~~~~~~lp~~~~g------Tg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~a 128 (249)
T KOG3545|consen 55 RGRKAEKYRLPYSWDG------TGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLA 128 (249)
T ss_pred ccCcceEEeCCCCccc------cceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccce
Confidence 4556666567776443 5678899999999988889999999884 3444433211 011111134
Q ss_pred eeCCeEEEEEeecCCCCCceeEEEeecCc----cceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC
Q 016239 265 ASPNMLVLAGMCNAPRGPSFNLWKVDELS----MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK 340 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~ 340 (392)
+...-|+++=...++.. .+.|=++|+.+ .+|.. .++. +....++.+-|.||++-.....
T Consensus 129 vDE~GLWviYat~~~~g-~iv~skLdp~tl~~e~tW~T--~~~k--------------~~~~~aF~iCGvLY~v~S~~~~ 191 (249)
T KOG3545|consen 129 VDENGLWVIYATPENAG-TIVLSKLDPETLEVERTWNT--TLPK--------------RSAGNAFMICGVLYVVHSYNCT 191 (249)
T ss_pred ecccceeEEecccccCC-cEEeeccCHHHhheeeeecc--ccCC--------------CCcCceEEEeeeeEEEeccccC
Confidence 44455555432222111 33344566633 23421 1111 2355667777888888753322
Q ss_pred CCCeEEEEeecCCCccceeeeecCCCCCccc
Q 016239 341 KYPACVCEIGTESDKCRCSWRRLPQLPSPVN 371 (392)
Q Consensus 341 ~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~ 371 (392)
.....+-+|..+++ = +-+++|++..
T Consensus 192 -~~~i~yaydt~~~~----~-~~~~ipf~N~ 216 (249)
T KOG3545|consen 192 -HTQISYAYDTTTGT----Q-ERIDLPFPNP 216 (249)
T ss_pred -CceEEEEEEcCCCc----e-ecccccccch
Confidence 22222344887777 2 3456665543
No 192
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=49.85 E-value=75 Score=30.43 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=20.1
Q ss_pred CEEEEEeecccEEEEEECCCCc
Q 016239 225 GRFYVFGIYSFSVSSFDLKKHV 246 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~~ 246 (392)
..+++.||.++.|..+|..+++
T Consensus 312 ~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 312 QNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred CcEEEEecCCCcEEEEeccchH
Confidence 4899999999999999998886
No 193
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.76 E-value=2e+02 Score=26.15 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCC--cceEEeecc-eEEeecC--------cceEecCCcCcee
Q 016239 62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRA--GSCFIGANG-FFFTTTP--------RFGFSRILNTSWH 130 (392)
Q Consensus 62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~g-~i~v~gg--------~~~ynp~~~~~W~ 130 (392)
.+...++..+.+ .....||+.+.+-...-..+..|. +|++.+.+| ++|..-. .=+||.. +..+
T Consensus 16 ~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ 89 (305)
T PF07433_consen 16 RPEAVAFARRPG----TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYR 89 (305)
T ss_pred CCeEEEEEeCCC----cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcE
Confidence 566777777665 456789998887554333344454 456666655 5666522 2578875 4555
Q ss_pred ecCCCCc-CccCceEEEE
Q 016239 131 LTSPLRF-SRINPLVGVF 147 (392)
Q Consensus 131 ~~~~~~~-~r~~~~~~~~ 147 (392)
++...+. ..--|.+...
T Consensus 90 ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLM 107 (305)
T ss_pred EEeEecCCCcChhhEEEc
Confidence 6555443 2233555555
No 194
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=47.70 E-value=3e+02 Score=27.47 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=42.2
Q ss_pred EEECC-EEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEec
Q 016239 221 ALFRG-RFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI 299 (392)
Q Consensus 221 ~~~~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~ 299 (392)
..+++ ..++-|+.++.|.++|+.+.. +-+..+.... ....-..+.+++++-+..++ .+.+| |.++.+-.++
T Consensus 377 l~~~~~~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~-~~v~~l~~~~~~Lvs~~aD~----~Ik~W--D~~~~~~~~~ 448 (537)
T KOG0274|consen 377 LIVDSENRLLSGSLDTTIKVWDLRTKR-KCIHTLQGHT-SLVSSLLLRDNFLVSSSADG----TIKLW--DAEEGECLRT 448 (537)
T ss_pred EEecCcceEEeeeeccceEeecCCchh-hhhhhhcCCc-ccccccccccceeEeccccc----cEEEe--ecccCceeee
Confidence 35677 777778888889999998875 2222222111 11112334666666665443 78888 7666655444
Q ss_pred cc
Q 016239 300 AI 301 (392)
Q Consensus 300 ~~ 301 (392)
..
T Consensus 449 ~~ 450 (537)
T KOG0274|consen 449 LE 450 (537)
T ss_pred ec
Confidence 33
No 195
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=47.48 E-value=86 Score=22.63 Aligned_cols=18 Identities=6% Similarity=-0.056 Sum_probs=15.4
Q ss_pred cEEEEEECCCCceeeccc
Q 016239 235 FSVSSFDLKKHVWSEVQT 252 (392)
Q Consensus 235 ~~i~~yd~~~~~W~~i~~ 252 (392)
+.++.|||.+++.+.+..
T Consensus 37 GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred cCEEEEECCCCeEEEehh
Confidence 589999999999888744
No 196
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=47.00 E-value=2.2e+02 Score=25.76 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEECCC
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDLKK 244 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~~~ 244 (392)
.+..||..++.=..+..-..+.+ .... ......+.||.++.|-..|+..
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~--------ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIR--------CIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred eEEEEEecCCcceeeccCCCceE--------EEEeeccCCeEEEcccCccEEEEeccc
Confidence 68999998887666654333211 1111 1244667788888999999976
No 197
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.36 E-value=2.3e+02 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.396 Sum_probs=25.5
Q ss_pred EEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCccceeeeecCCCCCccc-ccceEEEee
Q 016239 323 KCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDKCRCSWRRLPQLPSPVN-EFHKVISFC 380 (392)
Q Consensus 323 ~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~p~~~~-~~~~~~~~~ 380 (392)
-++..|+.|..+-- .... +.+ |..-++ ++.||..-+ +|..++.+|
T Consensus 404 vavs~g~~iIAiPh---DNRq---vRlfDlnG~R-------laRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 404 VAVSKGHPIIAIPH---DNRQ---VRLFDLNGNR-------LARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eEeecCCceEEecc---CCce---EEEEecCCCc-------cccCCcccccccceeeeee
Confidence 45566777766652 1111 444 777777 888885543 455554444
No 198
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=45.54 E-value=2.1e+02 Score=25.09 Aligned_cols=144 Identities=11% Similarity=0.073 Sum_probs=73.0
Q ss_pred CCEEEEEeecc-cEEEEEEC----CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc---c
Q 016239 224 RGRFYVFGIYS-FSVSSFDL----KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM---E 295 (392)
Q Consensus 224 ~g~ly~~gg~~-~~i~~yd~----~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~---~ 295 (392)
++++|++..+. ..+.-|.. ..+.+...-..|.... ...-|+.+|.+|.-... +..|=+||..+. .
T Consensus 30 ~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~-gTg~VVynGs~yynk~~------t~~ivky~l~~~~~~~ 102 (249)
T KOG3545|consen 30 DDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWD-GTGHVVYNGSLYYNKAG------TRNIIKYDLETRTVAG 102 (249)
T ss_pred cCceEEeccccCceEEEeccHHHhhccCcceEEeCCCCcc-ccceEEEcceEEeeccC------CcceEEEEeecceeee
Confidence 46677775543 35555544 2334444433333222 33347889998876522 233335565553 2
Q ss_pred eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCCcccccce
Q 016239 296 FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHK 375 (392)
Q Consensus 296 W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~ 375 (392)
|..++.+...-...+.. .+....-+++.++=|+++=......+.+.+-.+|+.+-+.++.|.. ..++...+-
T Consensus 103 ~~~lp~a~y~~~~~y~~----~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T----~~~k~~~~~ 174 (249)
T KOG3545|consen 103 SAALPYAGYHNPSPYYW----GGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT----TLPKRSAGN 174 (249)
T ss_pred eeeccccccCCCccccc----CCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeecc----ccCCCCcCc
Confidence 44444332211000000 0123456677777777765444444444444558877666677966 333445566
Q ss_pred EEEeecc
Q 016239 376 VISFCST 382 (392)
Q Consensus 376 ~~~~~~~ 382 (392)
+++.|+.
T Consensus 175 aF~iCGv 181 (249)
T KOG3545|consen 175 AFMICGV 181 (249)
T ss_pred eEEEeee
Confidence 6666753
No 199
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=45.13 E-value=3.6e+02 Score=28.36 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=55.4
Q ss_pred eeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239 218 LSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297 (392)
Q Consensus 218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~ 297 (392)
..+..+....++.|...+.|.+|...+.+-..+-....-+ .....+..+|++.+.|+.+. .+.+-..+-.+..-+
T Consensus 59 v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp-~r~~~v~g~g~~iaagsdD~----~vK~~~~~D~s~~~~ 133 (933)
T KOG1274|consen 59 VSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP-IRDLAVSGSGKMIAAGSDDT----AVKLLNLDDSSQEKV 133 (933)
T ss_pred eEEEeecccceEEeeccceEEEeeCCCCCccceeeeeecc-ceEEEEecCCcEEEeecCce----eEEEEeccccchhee
Confidence 4455566667777877789999988777665432211111 12233555777888876543 344443333333222
Q ss_pred eccc-CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239 298 EIAI-MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN 335 (392)
Q Consensus 298 ~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 335 (392)
..+. -|.. ...| .+..--.+++..+|+++|+.
T Consensus 134 lrgh~apVl-~l~~-----~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 134 LRGHDAPVL-QLSY-----DPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ecccCCcee-eeeE-----cCCCCEEEEEecCceEEEEE
Confidence 1111 1111 0001 11122456667888888875
No 200
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=44.73 E-value=1.5e+02 Score=26.05 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=55.6
Q ss_pred EEEEEeCC-CCCeecCCCCCCCCCCCCCccceeeEE--ECCEEEEEeec--ccEE-EEEECC-CCceeeccc--CCCCcc
Q 016239 188 AVEIYDPH-SDSWELCPPLPADFRSGYSSQYLSSAL--FRGRFYVFGIY--SFSV-SSFDLK-KHVWSEVQT--LRPPGV 258 (392)
Q Consensus 188 ~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~g~ly~~gg~--~~~i-~~yd~~-~~~W~~i~~--~~~~~~ 258 (392)
....|+.. -.+|+.....+..... ...+.+ -+|.|+++-.. ...+ +.+... -.+|+.... .+...
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~~~-----~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~- 208 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQGE-----CEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPN- 208 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSEEE-----EEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCC-
T ss_pred eEEEEeCCCCceeeccccccccCCc-----ceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCccc-
Confidence 34445444 4569888655321011 122222 36788888644 1233 333333 348998542 22222
Q ss_pred cceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHH
Q 016239 259 MFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD 305 (392)
Q Consensus 259 ~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~ 305 (392)
....++. -+|+++++... ......+.++.-.....+|+....+...
T Consensus 209 ~~~~~~~~~~g~~~~~~~~-~~~r~~l~l~~S~D~g~tW~~~~~i~~~ 255 (275)
T PF13088_consen 209 SSISLVRLSDGRLLLVYNN-PDGRSNLSLYVSEDGGKTWSRPKTIDDG 255 (275)
T ss_dssp EEEEEEECTTSEEEEEEEC-SSTSEEEEEEEECTTCEEEEEEEEEEEE
T ss_pred CCceEEEcCCCCEEEEEEC-CCCCCceEEEEEeCCCCcCCccEEEeCC
Confidence 2222333 47788887762 1223345665545558899977665443
No 201
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=44.72 E-value=13 Score=33.92 Aligned_cols=39 Identities=21% Similarity=0.477 Sum_probs=33.0
Q ss_pred CcccCCcHHHHHHHHhhCC--------hhhHHHhhccchhhhhhhcC
Q 016239 8 SAFTTLSTDITERILSLLP--------IPTLIRASSVCKSWRSIISA 46 (392)
Q Consensus 8 ~~~~~Lp~dl~~~iL~rLP--------~~~l~~~~~v~k~W~~l~~~ 46 (392)
..|+.||++++.+|+.+.- .+++..+..||+.|+.....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4799999999999998773 45788999999999987654
No 202
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=44.72 E-value=2.3e+02 Score=25.28 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=66.8
Q ss_pred CeEEEEeceeecCcccccccceEEEEEeCC-CCCeecCCCCCCC-CCCCCCccceeeEE-ECCEEEEEeecccEEEEEEC
Q 016239 166 PKFIVVGGVRFIGGLVDIEDRLAVEIYDPH-SDSWELCPPLPAD-FRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 166 ~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~-~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~ 242 (392)
+.++.-+|.+ ..+.+++.. .++|+....+... .|.- .+++. -.|++...+.++..+..|--
T Consensus 27 g~ilAscg~D-----------k~vriw~~~~~~s~~ck~vld~~hkrsV-----RsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTD-----------KAVRIWSTSSGDSWTCKTVLDDGHKRSV-----RSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCC-----------ceEEEEecCCCCcEEEEEeccccchhee-----eeeeecCCCcEEEEeeccceEEEeec
Confidence 4566666652 257777776 6789877533211 0221 22222 14676666777777777777
Q ss_pred CCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCH
Q 016239 243 KKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPH 304 (392)
Q Consensus 243 ~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~ 304 (392)
....|+.+..+......-..+ -..+|.++.....++ ++=||+-| +.++...++.+..
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK----SVWiWe~d-eddEfec~aVL~~ 148 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK----SVWIWEID-EDDEFECIAVLQE 148 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC----eEEEEEec-CCCcEEEEeeecc
Confidence 788888877665533333322 233566555543332 67777766 4455666655544
No 203
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=44.38 E-value=58 Score=30.05 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=41.0
Q ss_pred cCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC--EEEEEeecccEEEEE
Q 016239 163 CNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG--RFYVFGIYSFSVSSF 240 (392)
Q Consensus 163 ~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g--~ly~~gg~~~~i~~y 240 (392)
...+++|+..-.. ...........+|+||..+++=-.--++..+ -. .-.+.-+. .||.+.+..+.+.+|
T Consensus 247 ~~~~rlyvLMh~g--~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~------Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 247 AASGRLYVLMHQG--GEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-ID------SIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp TTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ES------EEEEESSSS-EEEEEETTTTEEEEE
T ss_pred cccCeEEEEecCC--CCCCccCCceEEEEEECCCCeEEEEEeCCCc-cc------eEEEccCCCcEEEEEcCCCCeEEEE
Confidence 3388999986321 1222334456899999988753222122221 00 11222233 577776666799999
Q ss_pred ECCCCce
Q 016239 241 DLKKHVW 247 (392)
Q Consensus 241 d~~~~~W 247 (392)
|..+++-
T Consensus 318 D~~tGk~ 324 (342)
T PF06433_consen 318 DAATGKL 324 (342)
T ss_dssp ETTT--E
T ss_pred eCcCCcE
Confidence 9998854
No 204
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.37 E-value=2.1e+02 Score=24.62 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=85.1
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~ 242 (392)
+++++..-|.. ..+.+.++|..+++ |++. ++.+--.+ -+.+..++.+|.+.=..+.-+.||.
T Consensus 55 ~g~i~esTG~y---------g~S~ir~~~L~~gq~~~s~~--l~~~~~Fg-----EGit~~gd~~y~LTw~egvaf~~d~ 118 (262)
T COG3823 55 DGHILESTGLY---------GFSKIRVSDLTTGQEIFSEK--LAPDTVFG-----EGITKLGDYFYQLTWKEGVAFKYDA 118 (262)
T ss_pred CCEEEEecccc---------ccceeEEEeccCceEEEEee--cCCccccc-----cceeeccceEEEEEeccceeEEECh
Confidence 77888877752 23478888888554 5443 22221333 4667789999999877777788887
Q ss_pred CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc---eEecc--cCCHHHHHhhcCCcccC
Q 016239 243 KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME---FSEIA--IMPHDFLYSLVDTEEDD 317 (392)
Q Consensus 243 ~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~---W~~~~--~~p~~~~~~~~~~~~~~ 317 (392)
.+ .+.+...+-.+ ..-.++.-+..|++..|. .-+.-.||++-. =.++. ..|...
T Consensus 119 ~t--~~~lg~~~y~G-eGWgLt~d~~~LimsdGs-------atL~frdP~tfa~~~~v~VT~~g~pv~~----------- 177 (262)
T COG3823 119 DT--LEELGRFSYEG-EGWGLTSDDKNLIMSDGS-------ATLQFRDPKTFAELDTVQVTDDGVPVSK----------- 177 (262)
T ss_pred HH--hhhhcccccCC-cceeeecCCcceEeeCCc-------eEEEecCHHHhhhcceEEEEECCeeccc-----------
Confidence 54 34444433322 223345556666655442 112222554311 01111 112221
Q ss_pred ccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCCcc
Q 016239 318 KFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPV 370 (392)
Q Consensus 318 ~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~ 370 (392)
--..-.+++.+|.-=- ....+..+||++++ -..|..+..++...
T Consensus 178 ---LNELE~VdG~lyANVw-----~t~~I~rI~p~sGr-V~~widlS~L~~~~ 221 (262)
T COG3823 178 ---LNELEWVDGELYANVW-----QTTRIARIDPDSGR-VVAWIDLSGLLKEL 221 (262)
T ss_pred ---ccceeeeccEEEEeee-----eecceEEEcCCCCc-EEEEEEccCCchhc
Confidence 1123345666664321 22233455888776 35699998887554
No 205
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=43.38 E-value=3.5e+02 Score=26.98 Aligned_cols=173 Identities=14% Similarity=0.188 Sum_probs=84.3
Q ss_pred EEEEeCCCCCeecCCCCCC-C-CCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee
Q 016239 189 VEIYDPHSDSWELCPPLPA-D-FRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS 266 (392)
Q Consensus 189 ~~~yd~~~~~W~~~~~~~~-~-~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~ 266 (392)
+..-.|....|+.+.+.+. . +..++ ....=++..||++++--| |-++++.-++|+.|..+..... ...
T Consensus 210 vs~~~P~GraW~~i~~~t~L~qISagP-tg~VwAvt~nG~vf~R~G----VsRqNp~GdsWkdI~tP~~a~~-~v~---- 279 (705)
T KOG3669|consen 210 VSVDRPCGRAWKVICPYTDLSQISAGP-TGVVWAVTENGAVFYREG----VSRQNPEGDSWKDIVTPRQALE-PVC---- 279 (705)
T ss_pred ccCCCCCCceeeecCCCCccceEeecC-cceEEEEeeCCcEEEEec----ccccCCCCchhhhccCcccccc-eEE----
Confidence 4445677889999876541 1 01110 001123445777776655 5578999999998866544211 000
Q ss_pred CCeEEEEEeecCCCCCceeEEEeecCccceEecccC---CHHHHHhhcCCc-----ccCccceeEEEEeCCEEEEEeccc
Q 016239 267 PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM---PHDFLYSLVDTE-----EDDKFASLKCVGLGNLIYVFNEEY 338 (392)
Q Consensus 267 ~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~---p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~v~gg~~ 338 (392)
.-+| ...+|.+|.+.+.|-..... |+.-...+..+. ..++-..+..+.+++.+|.++...
T Consensus 280 ----iSvG--------t~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf~SV~~ndqVfaisa~~ 347 (705)
T KOG3669|consen 280 ----ISVG--------TQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISFQSVIHNDQVFAISAQA 347 (705)
T ss_pred ----EEec--------cceEEEEecCCcEEEEecccccCcccccccccccccccceEEecceeeEEEEecceEEEEeccc
Confidence 1122 34566666666666554332 222111111110 011223566678889999888532
Q ss_pred cCCCCeEEEEeecCCCccceeeeecCCCCCcccccceEEEe-eccccccc
Q 016239 339 HKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISF-CSTVSLHN 387 (392)
Q Consensus 339 ~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~-~~~~~~~~ 387 (392)
..-.+..+=+-+|.-.. |+.+..-|.-...+...+.+ ..+..+|.
T Consensus 348 ~i~~R~GVt~~~P~Gk~----w~liqc~~~wisv~~sgv~i~s~k~~~~~ 393 (705)
T KOG3669|consen 348 KIEVREGVTDKLPMGKW----WQLIQCQPSWISVNNSGVWISSGKNEFHV 393 (705)
T ss_pred ceeeeccccccCccccc----eeeeecCceeEeeecceEEEEecCCceee
Confidence 10000000111444444 77665555555554433333 34554443
No 206
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.37 E-value=2.6e+02 Score=25.44 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=54.8
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEE----eecccEEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVF----GIYSFSVSSF 240 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~----gg~~~~i~~y 240 (392)
++++++.-+. +.....++..|..++.=+.+..-|.. -.+...+-.+|-+ +|. ..|.+|
T Consensus 117 ~D~LLlAR~D--------Gh~nLGvy~ldr~~g~~~~L~~~ps~---------KG~~~~D~a~F~i~~~~~g~-~~i~~~ 178 (339)
T PF09910_consen 117 EDRLLLARAD--------GHANLGVYSLDRRTGKAEKLSSNPSL---------KGTLVHDYACFGINNFHKGV-SGIHCL 178 (339)
T ss_pred cCEEEEEecC--------CcceeeeEEEcccCCceeeccCCCCc---------CceEeeeeEEEeccccccCC-ceEEEE
Confidence 6778877542 33445677778888877777665553 2333344444433 221 489999
Q ss_pred ECCCCce--eecccCCC------CcccceeEEeeCCeEEEEE
Q 016239 241 DLKKHVW--SEVQTLRP------PGVMFSFLIASPNMLVLAG 274 (392)
Q Consensus 241 d~~~~~W--~~i~~~~~------~~~~~~~~~~~~g~l~v~g 274 (392)
|+.+++| +..+.... .......++...+++|.+-
T Consensus 179 Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~ 220 (339)
T PF09910_consen 179 DLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV 220 (339)
T ss_pred EccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE
Confidence 9999999 44332111 1223345677788887653
No 207
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=42.81 E-value=3.6e+02 Score=26.92 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=40.8
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEEC--CEEEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFR--GRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~i~~yd~ 242 (392)
+-.+|++|.. .+++.++.+.+.|-..-....+ . ..++.++ .-|..+|+..+.+..+|+
T Consensus 145 scDly~~gsg------------~evYRlNLEqGrfL~P~~~~~~-~-------lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 145 SCDLYLVGSG------------SEVYRLNLEQGRFLNPFETDSG-E-------LNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CccEEEeecC------------cceEEEEccccccccccccccc-c-------ceeeeecCccceEEecccCceEEEecc
Confidence 4468887643 1699999999988544222211 1 2334444 357888988899999999
Q ss_pred CCCc
Q 016239 243 KKHV 246 (392)
Q Consensus 243 ~~~~ 246 (392)
.+.+
T Consensus 205 R~ks 208 (703)
T KOG2321|consen 205 RDKS 208 (703)
T ss_pred hhhh
Confidence 7764
No 208
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=42.81 E-value=1.9e+02 Score=27.30 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=40.7
Q ss_pred EECCEEEEEeecccEEEEEECCCCceeecccCCCCcccc-eeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239 222 LFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMF-SFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS 293 (392)
Q Consensus 222 ~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~-~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~ 293 (392)
..+|.+++....+..|-++|+.+++-.... +...+... -++..-++.|+..|. .......+.+| |+..
T Consensus 182 n~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGf-sr~seRq~aLw--dp~n 250 (472)
T KOG0303|consen 182 NRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGF-SRMSERQIALW--DPNN 250 (472)
T ss_pred ccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeecc-ccccccceecc--Cccc
Confidence 347888888888889999999998754443 22222222 234445677665553 22223356777 6544
No 209
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=42.55 E-value=27 Score=19.66 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=21.2
Q ss_pred EeecceEEeecCcceEecCCcCceeecC
Q 016239 106 IGANGFFFTTTPRFGFSRILNTSWHLTS 133 (392)
Q Consensus 106 ~~~~g~i~v~gg~~~ynp~~~~~W~~~~ 133 (392)
+..+|.+|...|+-.-||. ...|+.++
T Consensus 6 v~~~G~v~~R~Gis~~~P~-G~~W~~i~ 32 (32)
T PF06462_consen 6 VTSDGSVYFRTGISPSNPE-GTSWEHIP 32 (32)
T ss_pred EcCCCCEEEECcCCCCCCC-CCCcEECC
Confidence 3458889999888888898 77898764
No 210
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=42.38 E-value=89 Score=24.54 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=33.5
Q ss_pred EEEEeecccEEEEEECCCCc---eeecccCCCCccccee---EEeeCCeEEEEEeecCCCCCceeEEEeecCccc--eEe
Q 016239 227 FYVFGIYSFSVSSFDLKKHV---WSEVQTLRPPGVMFSF---LIASPNMLVLAGMCNAPRGPSFNLWKVDELSME--FSE 298 (392)
Q Consensus 227 ly~~gg~~~~i~~yd~~~~~---W~~i~~~~~~~~~~~~---~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~--W~~ 298 (392)
+.++|. ...+++||...+. +++++. +..... +....+.|.++||.. .|+-||.+.++ |+.
T Consensus 66 ~LliGt-~t~llaYDV~~N~d~Fyke~~D----Gvn~i~~g~~~~~~~~l~ivGGnc-------si~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 66 CLLIGT-QTSLLAYDVENNSDLFYKEVPD----GVNAIVIGKLGDIPSPLVIVGGNC-------SIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEec-cceEEEEEcccCchhhhhhCcc----ceeEEEEEecCCCCCcEEEECceE-------EEEEeCCCCcEEEEEe
Confidence 555555 3589999998874 233321 221111 122356788888743 45555665554 765
Q ss_pred c
Q 016239 299 I 299 (392)
Q Consensus 299 ~ 299 (392)
.
T Consensus 134 t 134 (136)
T PF14781_consen 134 T 134 (136)
T ss_pred c
Confidence 3
No 211
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=41.61 E-value=2.4e+02 Score=24.65 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=53.1
Q ss_pred EEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCC--eEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239 221 ALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPN--MLVLAGMCNAPRGPSFNLWKVDELSMEFSE 298 (392)
Q Consensus 221 ~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g--~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~ 298 (392)
...++.=+..||.+..+..+|.++++-.. .......... .+..++ .+.+.|+.+. ++.+| |-...+.+.
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~R--r~rgH~aqVN-tV~fNeesSVv~SgsfD~----s~r~w--DCRS~s~eP 137 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDR--RFRGHLAQVN-TVRFNEESSVVASGSFDS----SVRLW--DCRSRSFEP 137 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeee--ecccccceee-EEEecCcceEEEeccccc----eeEEE--EcccCCCCc
Confidence 34455556666667899999999885322 2211111111 233333 3444454432 78888 888888777
Q ss_pred cccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239 299 IAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN 335 (392)
Q Consensus 299 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 335 (392)
++.+.... .....+.+.+...|.|
T Consensus 138 iQildea~-------------D~V~Si~v~~heIvaG 161 (307)
T KOG0316|consen 138 IQILDEAK-------------DGVSSIDVAEHEIVAG 161 (307)
T ss_pred cchhhhhc-------------CceeEEEecccEEEee
Confidence 77776653 2455555555555554
No 212
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=40.50 E-value=2.7e+02 Score=25.25 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=54.4
Q ss_pred CEEEEEeecccEEEEEECCCC-ceeecccCCCCcccceeEEee---CCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239 225 GRFYVFGIYSFSVSSFDLKKH-VWSEVQTLRPPGVMFSFLIAS---PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA 300 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~~~~-~W~~i~~~~~~~~~~~~~~~~---~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~ 300 (392)
+.+.+.|..++.|-+|+++.. +..- . .........+.++ +|.....|++++ ...+| |..+++=.+++
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~--k-a~~~~~~PvL~v~WsddgskVf~g~~Dk----~~k~w--DL~S~Q~~~v~ 110 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVP--K-AQQSHDGPVLDVCWSDDGSKVFSGGCDK----QAKLW--DLASGQVSQVA 110 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccc--h-hhhccCCCeEEEEEccCCceEEeeccCC----ceEEE--EccCCCeeeee
Confidence 445566777788888888664 2111 1 0011122222222 555555565554 68888 88888777776
Q ss_pred cCCHHHHHhhcCCcccCccceeEEEEeCCEE--EEEeccccCCCCeEEEEe-ecCC
Q 016239 301 IMPHDFLYSLVDTEEDDKFASLKCVGLGNLI--YVFNEEYHKKYPACVCEI-GTES 353 (392)
Q Consensus 301 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~v~gg~~~~~~~~~~~~~-d~~~ 353 (392)
.-.... -.|..+++-. ++.-|..++. +.+ |+..
T Consensus 111 ~Hd~pv---------------kt~~wv~~~~~~cl~TGSWDKT-----lKfWD~R~ 146 (347)
T KOG0647|consen 111 AHDAPV---------------KTCHWVPGMNYQCLVTGSWDKT-----LKFWDTRS 146 (347)
T ss_pred ecccce---------------eEEEEecCCCcceeEecccccc-----eeecccCC
Confidence 644442 1333444333 5666667666 677 5543
No 213
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=39.68 E-value=2.3e+02 Score=23.77 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=53.1
Q ss_pred cEEEEEECCCCceeecccCCCC-cccceeEE-eeCCeE-EEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhc
Q 016239 235 FSVSSFDLKKHVWSEVQTLRPP-GVMFSFLI-ASPNML-VLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLV 311 (392)
Q Consensus 235 ~~i~~yd~~~~~W~~i~~~~~~-~~~~~~~~-~~~g~l-~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~ 311 (392)
+.|+.+|..++.|..+..-+.. ....-.+. .-+..| +++|...+.-.....+|.|+..+..=.++......-
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkk----- 162 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKK----- 162 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccc-----
Confidence 4788888888777654322221 11111222 225556 445533332223468889999998877777765431
Q ss_pred CCcccCccceeEEEEeCCEEEEEeccc
Q 016239 312 DTEEDDKFASLKCVGLGNLIYVFNEEY 338 (392)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~i~v~gg~~ 338 (392)
....++...++.|-+-+-.|
T Consensus 163 -------qQVis~e~~gd~L~Lki~vY 182 (200)
T PF15525_consen 163 -------QQVISAEKNGDNLNLKINVY 182 (200)
T ss_pred -------eeEEEEEEeCCEEEEEEEEE
Confidence 23566777888887766444
No 214
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=39.18 E-value=58 Score=18.84 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=13.8
Q ss_pred EEEEEeecccEEEEEECCCC--ceee
Q 016239 226 RFYVFGIYSFSVSSFDLKKH--VWSE 249 (392)
Q Consensus 226 ~ly~~gg~~~~i~~yd~~~~--~W~~ 249 (392)
.+|+- ...+.|+++|.+++ .|+.
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTTSEEEEE
T ss_pred EEEEe-CCCCEEEEEECCCCCEEEee
Confidence 44544 55567777777666 3544
No 215
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=38.68 E-value=74 Score=30.78 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=41.2
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCC-CCCCCccceeeEEECCEEEEEeecccEEEEEECC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADF-RSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLK 243 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~ 243 (392)
+++-.++||. ..++-++|..+-+=+..+.++... .+. +-++.-+.++.+..-.++.|.+||+.
T Consensus 476 dgrtLivGGe-----------astlsiWDLAapTprikaeltssapaCy-----ALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 476 DGRTLIVGGE-----------ASTLSIWDLAAPTPRIKAELTSSAPACY-----ALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred CCceEEeccc-----------cceeeeeeccCCCcchhhhcCCcchhhh-----hhhcCCccceeeeeccCCcEEEEEcc
Confidence 7778888886 336777777766655444444310 111 22334466776666667889999998
Q ss_pred CCc
Q 016239 244 KHV 246 (392)
Q Consensus 244 ~~~ 246 (392)
+++
T Consensus 540 nq~ 542 (705)
T KOG0639|consen 540 NQT 542 (705)
T ss_pred cce
Confidence 875
No 216
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=38.39 E-value=3.8e+02 Score=26.04 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=44.8
Q ss_pred ECCEEEEEeeccc-EEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239 223 FRGRFYVFGIYSF-SVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI 301 (392)
Q Consensus 223 ~~g~ly~~gg~~~-~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~ 301 (392)
.++.-.++|-..+ .+..||..+..-+.+..... ...+.-+.-+|+-.+++-. ..++|++|.++..=+.+..
T Consensus 369 ~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg--~I~av~vs~dGK~~vvaNd------r~el~vididngnv~~idk 440 (668)
T COG4946 369 VDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG--NIEAVKVSPDGKKVVVAND------RFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred cCCcceEEeccCCceEEEEecCCceEEEeeCCcc--ceEEEEEcCCCcEEEEEcC------ceEEEEEEecCCCeeEecc
Confidence 3455667776665 88999998887666644322 2223334446776666522 6788888888776665544
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=38.19 E-value=3.2e+02 Score=25.04 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=55.7
Q ss_pred ceEEEEEeCCCCC-eecCCCCCCCCCCCCCccceeeEEEC--CEEEEEeecccEEEEEEC-CCCceeecccCCCCcccce
Q 016239 186 RLAVEIYDPHSDS-WELCPPLPADFRSGYSSQYLSSALFR--GRFYVFGIYSFSVSSFDL-KKHVWSEVQTLRPPGVMFS 261 (392)
Q Consensus 186 ~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~i~~yd~-~~~~W~~i~~~~~~~~~~~ 261 (392)
..++++|....+. |+....+... .. .-.++..+ ..=.+-++.+..-+++.. ..++|.....+....+...
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~H-d~-----~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt 104 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEH-DK-----IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAAT 104 (361)
T ss_pred CceEEEEEecCCCCceeceehhhh-Cc-----ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEecccee
Confidence 3479999988888 9988755432 11 02222222 112333444444556665 6778887655443222222
Q ss_pred eEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239 262 FLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297 (392)
Q Consensus 262 ~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~ 297 (392)
. +. -++..|.+|+.. ..+.|+.|..+.+=|.
T Consensus 105 ~-V~WsP~enkFAVgSga----r~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 105 C-VKWSPKENKFAVGSGA----RLISVCYYEQENDWWV 137 (361)
T ss_pred e-EeecCcCceEEeccCc----cEEEEEEEecccceeh
Confidence 1 22 266677776422 2688888877666554
No 218
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=37.67 E-value=2.7e+02 Score=24.91 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCC
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p 303 (392)
..-+.+-++.++.+-++|+.+.+-...-.-.. .......+..+|.|+..||.+. ...+|.++..++ +..+.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~-~~v~t~~vSpDGslcasGgkdg----~~~LwdL~~~k~----lysl~ 231 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS-GYVNTVTVSPDGSLCASGGKDG----EAMLWDLNEGKN----LYSLE 231 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhcccccc-ccEEEEEECCCCCEEecCCCCc----eEEEEEccCCce----eEecc
Q ss_pred HHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCc
Q 016239 304 HDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDK 355 (392)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~ 355 (392)
.... -.+++..-++..+.-+ .... +.+ |.++..
T Consensus 232 a~~~-------------v~sl~fspnrywL~~a-t~~s-----IkIwdl~~~~ 265 (315)
T KOG0279|consen 232 AFDI-------------VNSLCFSPNRYWLCAA-TATS-----IKIWDLESKA 265 (315)
T ss_pred CCCe-------------EeeEEecCCceeEeec-cCCc-----eEEEeccchh
No 219
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.34 E-value=3.2e+02 Score=24.88 Aligned_cols=80 Identities=10% Similarity=0.142 Sum_probs=45.9
Q ss_pred CEEEEEeecccEEEEEEC----CCCceeecccC------CCCcccceeEEee-----CCeEEEEEeecCC-CCCceeEEE
Q 016239 225 GRFYVFGIYSFSVSSFDL----KKHVWSEVQTL------RPPGVMFSFLIAS-----PNMLVLAGMCNAP-RGPSFNLWK 288 (392)
Q Consensus 225 g~ly~~gg~~~~i~~yd~----~~~~W~~i~~~------~~~~~~~~~~~~~-----~g~l~v~gg~~~~-~~~~~~v~~ 288 (392)
|......+..+.+-.|+. .-.+|+....+ |.........+.. ...++.+|..+.. ......||+
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 334444444556666653 22367764332 2222222222332 4556777755422 334689999
Q ss_pred eecCccceEecccCCH
Q 016239 289 VDELSMEFSEIAIMPH 304 (392)
Q Consensus 289 ~d~~~~~W~~~~~~p~ 304 (392)
|+...++|.++..+|.
T Consensus 206 ~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCcceeeeehhcCC
Confidence 9999999999998873
No 220
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=36.95 E-value=3.3e+02 Score=26.63 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=40.8
Q ss_pred ECCEEEEEeecccEEEEEECCCCc--e--eecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239 223 FRGRFYVFGIYSFSVSSFDLKKHV--W--SEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE 298 (392)
Q Consensus 223 ~~g~ly~~gg~~~~i~~yd~~~~~--W--~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~ 298 (392)
.+..-+|+.|..+.|-++|+.... . +.+..+....+.......-+|+-+++||.- .++.|| |...-+=+.
T Consensus 428 S~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea----stlsiW--DLAapTpri 501 (705)
T KOG0639|consen 428 SNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA----STLSIW--DLAAPTPRI 501 (705)
T ss_pred cCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc----ceeeee--eccCCCcch
Confidence 355666666656778888875431 0 111111122222233344588888888752 379999 665555444
Q ss_pred cccCCH
Q 016239 299 IAIMPH 304 (392)
Q Consensus 299 ~~~~p~ 304 (392)
...++.
T Consensus 502 kaelts 507 (705)
T KOG0639|consen 502 KAELTS 507 (705)
T ss_pred hhhcCC
Confidence 444443
No 221
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.58 E-value=65 Score=17.52 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=16.0
Q ss_pred EECCEEEEEeecccEEEEEECCCC
Q 016239 222 LFRGRFYVFGIYSFSVSSFDLKKH 245 (392)
Q Consensus 222 ~~~g~ly~~gg~~~~i~~yd~~~~ 245 (392)
..+|.+|+. ...+.++++|.+++
T Consensus 4 ~~~~~v~~~-~~~g~l~a~d~~~G 26 (33)
T smart00564 4 LSDGTVYVG-STDGTLYALDAKTG 26 (33)
T ss_pred EECCEEEEE-cCCCEEEEEEcccC
Confidence 445666664 45678999998765
No 222
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.56 E-value=3.1e+02 Score=24.44 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=59.1
Q ss_pred eeEEECC--EEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 219 SSALFRG--RFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 219 ~~~~~~g--~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
..|++++ .+.++|..++.+-+-|+.++ .|+.+-. .+.+..++ ++++. .|+|-+ +..+|.++.++.
T Consensus 15 pLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~-vvgdf-VV~GCy------~g~lYfl~~~tG 83 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAI-VVGDF-VVLGCY------SGGLYFLCVKTG 83 (354)
T ss_pred cEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeE-EECCE-EEEEEc------cCcEEEEEecch
Confidence 3455543 45556777788889999877 5776633 34444543 46666 444432 345666666555
Q ss_pred --ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeee
Q 016239 295 --EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWR 361 (392)
Q Consensus 295 --~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~ 361 (392)
-|.-+.--..+ ....+...++.||+-. -+.. .+-+|+.+.. +.|.
T Consensus 84 s~~w~f~~~~~vk--------------~~a~~d~~~glIycgs--hd~~----~yalD~~~~~--cVyk 130 (354)
T KOG4649|consen 84 SQIWNFVILETVK--------------VRAQCDFDGGLIYCGS--HDGN----FYALDPKTYG--CVYK 130 (354)
T ss_pred hheeeeeehhhhc--------------cceEEcCCCceEEEec--CCCc----EEEecccccc--eEEe
Confidence 36543221111 2345556666666543 1121 2444777665 5565
No 223
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=35.78 E-value=3e+02 Score=24.66 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=36.1
Q ss_pred eeEEECCEEEEEeecc-------cEEEEEECC-CCceeecccCCCCcccceeEEeeCCeEEEEE
Q 016239 219 SSALFRGRFYVFGIYS-------FSVSSFDLK-KHVWSEVQTLRPPGVMFSFLIASPNMLVLAG 274 (392)
Q Consensus 219 ~~~~~~g~ly~~gg~~-------~~i~~yd~~-~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~g 274 (392)
+.-..+|+.+++|-.. ..|.-|.-. .++|+.++..+.-....+.++.++|+|++-|
T Consensus 31 aPF~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gelifGG 94 (298)
T PF08950_consen 31 APFEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGELIFGG 94 (298)
T ss_dssp --EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEEEEEE
T ss_pred cceeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEEEEee
Confidence 3445689999998532 245555444 8899999886665567788889999998766
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.65 E-value=2e+02 Score=31.02 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=66.7
Q ss_pred EEEEEeecccEEEEEECCCCc---------eeecccCCCCcccceeEEee---CCeEEEEEeecCCCCCceeEEEeecCc
Q 016239 226 RFYVFGIYSFSVSSFDLKKHV---------WSEVQTLRPPGVMFSFLIAS---PNMLVLAGMCNAPRGPSFNLWKVDELS 293 (392)
Q Consensus 226 ~ly~~gg~~~~i~~yd~~~~~---------W~~i~~~~~~~~~~~~~~~~---~g~l~v~gg~~~~~~~~~~v~~~d~~~ 293 (392)
.|.+.+..++.|-.|+.-... |..+..+.+..++...++.. .|+|++.|... .+.|| |...
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r-----~IRIW--Da~~ 1196 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR-----SIRIW--DAHK 1196 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee-----EEEEE--eccc
Confidence 577777777777777665554 44454454434444445554 68888887532 78999 6655
Q ss_pred cceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCccceeeeecCCC
Q 016239 294 MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDKCRCSWRRLPQL 366 (392)
Q Consensus 294 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~ 366 (392)
+ ..+..+|..-. +. -...++-.+++.+++.|- .++++.+|+. -+..+..-+.|+.....
T Consensus 1197 E--~~~~diP~~s~-----t~----vTaLS~~~~~gn~i~AGf---aDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1197 E--QVVADIPYGSS-----TL----VTALSADLVHGNIIAAGF---ADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred c--eeEeecccCCC-----cc----ceeecccccCCceEEEee---cCCceEEeecccCCccccceeecccCCc
Confidence 4 34555665411 00 013344456678888874 3455666665 12222222457766444
No 225
>PTZ00420 coronin; Provisional
Probab=35.18 E-value=4.8e+02 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=21.1
Q ss_pred CCEEEEEeecccEEEEEECCCCceeec
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEV 250 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i 250 (392)
+|.+|+.|..++.|..|+...+.-..+
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcEEee
Confidence 488999998888999999977754443
No 226
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.16 E-value=1.9e+02 Score=26.31 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCc
Q 016239 196 SDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHV 246 (392)
Q Consensus 196 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~ 246 (392)
..+|+..+-...+...+ .-.++.+++...+-||.+..|..||..++.
T Consensus 28 s~~~~l~~lF~~~aH~~----sitavAVs~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAHAG----SITALAVSGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred ccceeeecccccccccc----ceeEEEecceeEeccCCCCcEEEEeccchh
Confidence 45676665433321222 256788899888889998999999997764
No 227
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=34.98 E-value=3.2e+02 Score=24.51 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=34.6
Q ss_pred EEeeCCeEEEEEeecCCCC-CceeEEEeecC-ccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239 263 LIASPNMLVLAGMCNAPRG-PSFNLWKVDEL-SMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE 336 (392)
Q Consensus 263 ~~~~~g~l~v~gg~~~~~~-~~~~v~~~d~~-~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg 336 (392)
-...+|+.++.|..+..+. ....|.-+... .++|+.++.-|.-.+ ...-+.-+++.+.+ ||
T Consensus 32 PF~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~L------------qDPF~t~I~gelif-GG 94 (298)
T PF08950_consen 32 PFEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQL------------QDPFVTRIQGELIF-GG 94 (298)
T ss_dssp -EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-------------EEEEEEEETTEEEE-EE
T ss_pred ceeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEe------------cCcceeeECCEEEE-ee
Confidence 3677999999998877665 44455555544 789999988555432 23445567777644 44
No 228
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=34.77 E-value=5.4e+02 Score=26.67 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=52.1
Q ss_pred CCEEEEEeecccEEEEEECCCCceee-cccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM 302 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~ 302 (392)
.|..++.|+.+..|.+||+-.+.=.. +..-. ..-....+.-++.+.+..+.+. .+.+| |.++....+. -|
T Consensus 118 ~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk--d~iT~~~F~~~~~~lvS~sKDs----~iK~W--dL~tqhCf~T-hv 188 (888)
T KOG0306|consen 118 IGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK--DSITQALFLNGDSFLVSVSKDS----MIKFW--DLETQHCFET-HV 188 (888)
T ss_pred cCceEeecCCCccEEEEEeccceeeEEeecch--HHHhHHhccCCCeEEEEeccCc----eEEEE--ecccceeeeE-Ee
Confidence 47888889999999999986553211 00000 0000111222355555444332 68899 6666543322 22
Q ss_pred CHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecC
Q 016239 303 PHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTE 352 (392)
Q Consensus 303 p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~ 352 (392)
.... -..+++..+ ++.|.+|. .....+++++.+
T Consensus 189 d~r~-------------Eiw~l~~~~-~~lvt~~~---dse~~v~~L~~~ 221 (888)
T KOG0306|consen 189 DHRG-------------EIWALVLDE-KLLVTAGT---DSELKVWELAFE 221 (888)
T ss_pred cccc-------------eEEEEEEec-ceEEEEec---CCceEEEEeecc
Confidence 2221 145666666 55555552 234556666333
No 229
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=34.23 E-value=5.1e+02 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=25.9
Q ss_pred CceeeeeCCCCceeeCCCCCC--CCCcceEEee-cceEEeecC
Q 016239 78 NQSFAFDPASNSWFHLPPAQE--PRAGSCFIGA-NGFFFTTTP 117 (392)
Q Consensus 78 ~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~~-~g~i~v~gg 117 (392)
..+++|++.. .|...+.++. .|+--+++-+ ++.+|-+|.
T Consensus 47 g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~ 88 (691)
T KOG2048|consen 47 GNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL 88 (691)
T ss_pred CcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecC
Confidence 4578899875 7876554444 3444467766 788888765
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=33.86 E-value=2.8e+02 Score=23.15 Aligned_cols=100 Identities=14% Similarity=0.243 Sum_probs=52.4
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecc---cEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYS---FSVSS 239 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~---~~i~~ 239 (392)
+.++.++-|. ....+.+||.+ .+.+..++.. . ...+.. +|.+.+++|.. +.|..
T Consensus 71 g~~favi~g~----------~~~~v~lyd~~---~~~i~~~~~~-~-------~n~i~wsP~G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 71 GNEFAVIYGS----------MPAKVTLYDVK---GKKIFSFGTQ-P-------RNTISWSPDGRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred CCEEEEEEcc----------CCcccEEEcCc---ccEeEeecCC-C-------ceEEEECCCCCEEEEEEccCCCcEEEE
Confidence 6666666553 12268899985 3333333322 1 122333 67888887754 57999
Q ss_pred EECCCCceeecccCCCCcccceeEE--eeCCeEEEEEeecCC--CCCceeEEEee
Q 016239 240 FDLKKHVWSEVQTLRPPGVMFSFLI--ASPNMLVLAGMCNAP--RGPSFNLWKVD 290 (392)
Q Consensus 240 yd~~~~~W~~i~~~~~~~~~~~~~~--~~~g~l~v~gg~~~~--~~~~~~v~~~d 290 (392)
||.. +.+.+....... ...+ ..+|+.++....... ....+.||.|+
T Consensus 130 wd~~--~~~~i~~~~~~~---~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 130 WDVR--KKKKISTFEHSD---ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EECC--CCEEeeccccCc---EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9997 344443332211 1222 237777776543211 11246777664
No 231
>PLN00181 protein SPA1-RELATED; Provisional
Probab=33.84 E-value=5.8e+02 Score=26.81 Aligned_cols=102 Identities=8% Similarity=-0.016 Sum_probs=51.9
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEEC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDL 242 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~ 242 (392)
+++.++.|+.+ ..+.+||..+.. ...+.. . .. .-......++..++.++.++.|-.||+
T Consensus 629 ~g~~latgs~d-----------g~I~iwD~~~~~~~~~~~~~--h--~~----~V~~v~f~~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 629 SGRSLAFGSAD-----------HKVYYYDLRNPKLPLCTMIG--H--SK----TVSYVRFVDSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCccceEecC--C--CC----CEEEEEEeCCCEEEEEECCCEEEEEeC
Confidence 56777777652 268889986542 111111 0 00 012333446777778888889999998
Q ss_pred CCC----ceeecccCCCCcc-cceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 243 KKH----VWSEVQTLRPPGV-MFSFLIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 243 ~~~----~W~~i~~~~~~~~-~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
.+. .|..+........ ........++.+++.|+.++ .+.+|..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~----~v~iw~~ 737 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN----EVFVYHK 737 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC----EEEEEEC
Confidence 643 2333322211111 11111233566666665433 5677743
No 232
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=33.44 E-value=1.3e+02 Score=19.52 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEeeCCeEEEEEeecCC-CCCceeEEEeecCc
Q 016239 263 LIASPNMLVLAGMCNAP-RGPSFNLWKVDELS 293 (392)
Q Consensus 263 ~~~~~g~l~v~gg~~~~-~~~~~~v~~~d~~~ 293 (392)
.+..+|+|++.|..... ......+.+|+++.
T Consensus 7 ~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DG 38 (55)
T TIGR02608 7 AVQSDGKILVAGYVDNSSGNNDFVLARLNADG 38 (55)
T ss_pred EECCCCcEEEEEEeecCCCcccEEEEEECCCC
Confidence 34458999999965432 33357788887653
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=32.88 E-value=4.5e+02 Score=25.17 Aligned_cols=93 Identities=9% Similarity=-0.067 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecc--cEEEEEECCCCceeecccCCCCcccceeEE
Q 016239 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFLI 264 (392)
Q Consensus 188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~ 264 (392)
.++.++..++..+.+..- . ... ......-+|+ |+...... ..|+.+|+.+++...+.... ..... ..
T Consensus 309 ~Iy~~~~~~g~~~~lt~~-g--~~~----~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p-~~ 378 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFT-G--SYN----TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESP-SF 378 (427)
T ss_pred EEEEEECCCCceEEEecC-C--CCc----CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCc-eE
Confidence 577777777666655421 1 111 0111222444 44433222 37899999888776664321 11112 23
Q ss_pred eeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239 265 ASPNMLVLAGMCNAPRGPSFNLWKVDELS 293 (392)
Q Consensus 265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~ 293 (392)
.-+|+.+++...... ...++.++...
T Consensus 379 spdg~~l~~~~~~~g---~~~l~~~~~~g 404 (427)
T PRK02889 379 APNGRYILYATQQGG---RSVLAAVSSDG 404 (427)
T ss_pred CCCCCEEEEEEecCC---CEEEEEEECCC
Confidence 446666665543321 34566666644
No 234
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.79 E-value=3.4e+02 Score=23.78 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK 244 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~ 244 (392)
+-.+.+.|+.+ .++..+|-.+++-+.+.-+... +.+ ...+.+.+...+.|..++.+-.||+..
T Consensus 112 esSVv~SgsfD-----------~s~r~wDCRS~s~ePiQildea-~D~-----V~Si~v~~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 112 ESSVVASGSFD-----------SSVRLWDCRSRSFEPIQILDEA-KDG-----VSSIDVAEHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred cceEEEecccc-----------ceeEEEEcccCCCCccchhhhh-cCc-----eeEEEecccEEEeeccCCcEEEEEeec
Confidence 34566666652 3688888888777666544443 444 667778899989898889999999977
Q ss_pred Cce
Q 016239 245 HVW 247 (392)
Q Consensus 245 ~~W 247 (392)
++-
T Consensus 175 G~l 177 (307)
T KOG0316|consen 175 GTL 177 (307)
T ss_pred cee
Confidence 653
No 235
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.79 E-value=3.8e+02 Score=24.37 Aligned_cols=126 Identities=12% Similarity=0.086 Sum_probs=71.7
Q ss_pred ECCEEEEE-eecccEEEEEECCCCceeecccCCC-CcccceeEEeeCCeEEEEEeecCC-------C--------CCcee
Q 016239 223 FRGRFYVF-GIYSFSVSSFDLKKHVWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAP-------R--------GPSFN 285 (392)
Q Consensus 223 ~~g~ly~~-gg~~~~i~~yd~~~~~W~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~-------~--------~~~~~ 285 (392)
+.+.-+.+ ......|+.|. .+.+.|. .+-.+.++...++.||.-|..... . .....
T Consensus 7 feaeahfi~~~d~~~iY~fe-------lvG~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSH 79 (339)
T PF09910_consen 7 FEAEAHFIDRDDSEKIYRFE-------LVGPPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSH 79 (339)
T ss_pred eeeeeEEEecCCceEEEEee-------eccCCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccce
Confidence 34444455 33334455543 4544444 444566667778888876653211 0 11346
Q ss_pred EEEeecCccc----eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeee
Q 016239 286 LWKVDELSME----FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWR 361 (392)
Q Consensus 286 v~~~d~~~~~----W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~ 361 (392)
|..||.++++ |++--.-+..+..+.- ..----.+|+|++.-+ ++.....++++|..+.+ =+
T Consensus 80 VH~yd~e~~~VrLLWkesih~~~~WaGEVS---------dIlYdP~~D~LLlAR~--DGh~nLGvy~ldr~~g~----~~ 144 (339)
T PF09910_consen 80 VHEYDTENDSVRLLWKESIHDKTKWAGEVS---------DILYDPYEDRLLLARA--DGHANLGVYSLDRRTGK----AE 144 (339)
T ss_pred EEEEEcCCCeEEEEEecccCCccccccchh---------heeeCCCcCEEEEEec--CCcceeeeEEEcccCCc----ee
Confidence 7788877665 7654444444321111 1111137789998874 56677888899988888 66
Q ss_pred ecCCCCCcc
Q 016239 362 RLPQLPSPV 370 (392)
Q Consensus 362 ~~~~~p~~~ 370 (392)
.+-.-|..+
T Consensus 145 ~L~~~ps~K 153 (339)
T PF09910_consen 145 KLSSNPSLK 153 (339)
T ss_pred eccCCCCcC
Confidence 666666554
No 236
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=31.65 E-value=4.8e+02 Score=25.69 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=24.0
Q ss_pred eeEEECCEEEEEeecccEEEEEECCCCceeec
Q 016239 219 SSALFRGRFYVFGIYSFSVSSFDLKKHVWSEV 250 (392)
Q Consensus 219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i 250 (392)
.++.-++...++||.++.+..|-+....-.+.
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccce
Confidence 34445788999999999999999877654433
No 237
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=31.36 E-value=4.3e+02 Score=24.47 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=27.9
Q ss_pred EEEEEeCCCCC-eecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeecccEEEEEECCCC
Q 016239 188 AVEIYDPHSDS-WELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYSFSVSSFDLKKH 245 (392)
Q Consensus 188 ~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~i~~yd~~~~ 245 (392)
++.+||..+.. -+.....|.. -.+ .....+ .......++..+.|-.||+.+.
T Consensus 51 sv~lyd~~tg~~l~~fk~~~~~-~N~-----vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFKGPPAT-TNG-----VRFISCDSPHGVISCSSDGTVRLWDIRSQ 104 (376)
T ss_pred eEEEEeccchhhhheecCCCCc-ccc-----eEEecCCCCCeeEEeccCCeEEEEEeecc
Confidence 68899988743 2333332221 111 111111 2344445566679999998765
No 238
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=31.30 E-value=4e+02 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=17.6
Q ss_pred CCEEEEEeecccEEEEEECCCCce
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVW 247 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W 247 (392)
++...+..|.+..+..+|.++++=
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCEEEEecCCceEEEEeccccee
Confidence 345555566678999999998864
No 239
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=28.56 E-value=1.1e+02 Score=17.53 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=17.7
Q ss_pred CCEEEEEeecccEEEEEECCCCce
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVW 247 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W 247 (392)
++.||+.....+.|..+|+.+.+-
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeE
Confidence 356888776678899999876543
No 240
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=27.96 E-value=4e+02 Score=24.89 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=40.9
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE 298 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~ 298 (392)
+..+.+.||.++.-+.++..+..|-..-.-.. .........++|.++..|+-.+ .+.||..+.....|+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK-DSVt~~~FshdgtlLATGdmsG----~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHK-DSVTCCSFSHDGTLLATGDMSG----KVLVFKVSTGGEQWKL 144 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCC-CceEEEEEccCceEEEecCCCc----cEEEEEcccCceEEEe
Confidence 67788888888888889998887543322221 2222334555777776665332 4555554444444443
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.80 E-value=1.5e+02 Score=29.90 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred CCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeeccc
Q 016239 159 SGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSF 235 (392)
Q Consensus 159 ~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~ 235 (392)
..|.+++..+.+..|. .+.+||+..++= +.++... .. ..+..+-..+|+.|..|+.+.
T Consensus 18 ~afkPDGsqL~lAAg~-------------rlliyD~ndG~l--lqtLKgH-KD---tVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGS-------------RLLVYDTSDGTL--LQPLKGH-KD---TVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred eEECCCCceEEEecCC-------------EEEEEeCCCccc--ccccccc-cc---eEEEEEEccCCceeccCCCce
Confidence 3455557788888776 699999877652 2222111 11 112333345888888888764
No 242
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=27.66 E-value=1.9e+02 Score=27.92 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=36.0
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCcc-cceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGV-MFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE 298 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~-~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~ 298 (392)
.+.|++.+|.++.|..||.-.+. ..+........ ...+...-+|.=++..+.+. .+.+| |.++.+-..
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~----~lKlw--DtETG~~~~ 294 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSASFDR----FLKLW--DTETGQVLS 294 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCc-ceehhhhcchhhhhhhhccccCCeeeeeecce----eeeee--ccccceEEE
Confidence 46788888888888777764421 11211111000 01112223455555555443 68888 888876543
No 243
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=27.47 E-value=4.4e+02 Score=23.43 Aligned_cols=157 Identities=14% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEe---CCCCCeecC--CCCCCCCCC-CCCccceeeEEECCEEEEEeeccc---
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYD---PHSDSWELC--PPLPADFRS-GYSSQYLSSALFRGRFYVFGIYSF--- 235 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd---~~~~~W~~~--~~~~~~~~~-~~~~~~~~~~~~~g~ly~~gg~~~--- 235 (392)
++++|++-....... ......+.|| ...+.|+.- +.++..... ...-..|+-+.+++.=|.+|-..+
T Consensus 84 ~NRLfa~iEtR~~a~----~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s 159 (367)
T PF12217_consen 84 GNRLFAVIETRTVAS----NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS 159 (367)
T ss_dssp TTEEEEEEEEEETTT------EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSS
T ss_pred cceeeEEEeehhhhh----hhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCC
Confidence 899998865432211 2233556665 356778743 333321000 001124677778888788774432
Q ss_pred --EE-EEEEC-----CCC-ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHH
Q 016239 236 --SV-SSFDL-----KKH-VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDF 306 (392)
Q Consensus 236 --~i-~~yd~-----~~~-~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~ 306 (392)
.| ..|-+ ... .=+.|+..-......+.+-..+|.||+..........-..+-+-+.....|+.+. +|..+
T Consensus 160 PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp~nv 238 (367)
T PF12217_consen 160 PRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FPNNV 238 (367)
T ss_dssp S-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT--
T ss_pred cceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-ccccc
Confidence 22 12211 111 1112222222333445566779999998754433222233444466777898764 34444
Q ss_pred HHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239 307 LYSLVDTEEDDKFASLKCVGLGNLIYVFNEE 337 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~ 337 (392)
. ....-++.+||.||+||.+
T Consensus 239 H-----------htnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 239 H-----------HTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp ------------SS---EEEETTEEEEEEE-
T ss_pred c-----------ccCCCceeeCCEEEEEecc
Confidence 3 3467788999999999963
No 244
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.16 E-value=1.5e+02 Score=17.88 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=21.0
Q ss_pred eeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCC
Q 016239 321 SLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTES 353 (392)
Q Consensus 321 ~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~ 353 (392)
...+.+.|+.+||..+ ...+.++++ ||..
T Consensus 4 a~~v~v~g~yaYva~~----~~Gl~IvDISnPs~ 33 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADG----NNGLVIVDISNPSN 33 (42)
T ss_pred EEEEEEECCEEEEEeC----CCCEEEEECCCCCC
Confidence 5578899999999854 344667777 7654
No 245
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.71 E-value=1.9e+02 Score=29.12 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=20.1
Q ss_pred ECCEEEEEeecccEEEEEECCCCc
Q 016239 223 FRGRFYVFGIYSFSVSSFDLKKHV 246 (392)
Q Consensus 223 ~~g~ly~~gg~~~~i~~yd~~~~~ 246 (392)
-+..+.+.||.++.|..+|..+..
T Consensus 128 k~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 128 KNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred cCceeEEecCCCccEEEEEccCcc
Confidence 367889999999999999988663
No 246
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=25.62 E-value=4.9e+02 Score=23.31 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.0
Q ss_pred CCEEEEEeecccEEEEEECCCCc
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHV 246 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~ 246 (392)
-+...+.|..++.|-.||..++.
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCc
Confidence 36777888888999999998863
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=24.43 E-value=4.2e+02 Score=22.10 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=38.1
Q ss_pred CEEEEEee-cccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCC
Q 016239 225 GRFYVFGI-YSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303 (392)
Q Consensus 225 g~ly~~gg-~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p 303 (392)
..+.++-| ....+..||.+.+. +...... ......-..+|++++++|..... ..+.+| |.. +.+.+....
T Consensus 72 ~~favi~g~~~~~v~lyd~~~~~---i~~~~~~-~~n~i~wsP~G~~l~~~g~~n~~-G~l~~w--d~~--~~~~i~~~~ 142 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVKGKK---IFSFGTQ-PRNTISWSPDGRFLVLAGFGNLN-GDLEFW--DVR--KKKKISTFE 142 (194)
T ss_pred CEEEEEEccCCcccEEEcCcccE---eEeecCC-CceEEEECCCCCEEEEEEccCCC-cEEEEE--ECC--CCEEeeccc
Confidence 45655544 34688999996333 2222221 12233344588888888754321 257777 665 455555543
No 248
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.35 E-value=4.9e+02 Score=25.89 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred ccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCccc
Q 016239 182 DIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVM 259 (392)
Q Consensus 182 ~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~ 259 (392)
++....+.-+|+...++-+.++ .+|.+-..- ..+..-+....++|-.+++|..||..++.=..+ ....
T Consensus 231 ~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~-----~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~ 300 (545)
T PF11768_consen 231 KGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI-----CCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEF 300 (545)
T ss_pred CCCceeEEEEEEeecCceeEEEEEEEecCCcce-----EEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecc
Q ss_pred ceeEEee--CCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239 260 FSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSM 294 (392)
Q Consensus 260 ~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~ 294 (392)
.+..+.+ +|.++++|+..+ .+.+| |...+
T Consensus 301 ~P~~iaWHp~gai~~V~s~qG----elQ~F--D~ALs 331 (545)
T PF11768_consen 301 IPTLIAWHPDGAIFVVGSEQG----ELQCF--DMALS 331 (545)
T ss_pred cceEEEEcCCCcEEEEEcCCc----eEEEE--EeecC
No 249
>TIGR03065 srtB_sig_QVPTGV sortase B signal domain, QVPTGV class. This model represents a boutique (unusual) sorting signal, recognized by a member of the sortase SrtB family rather than by the housekeeping sortase, SrtA.
Probab=24.22 E-value=1.3e+02 Score=16.39 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=13.6
Q ss_pred cceeEEEEeCCEEEEEe
Q 016239 319 FASLKCVGLGNLIYVFN 335 (392)
Q Consensus 319 ~~~~~~~~~~~~i~v~g 335 (392)
+...++++.|+-||+.-
T Consensus 13 f~al~iva~gg~~y~tk 29 (32)
T TIGR03065 13 FAALGIVAIGGAIYFTK 29 (32)
T ss_pred ceeEEEEEeccEEEEEE
Confidence 45678889999999874
No 250
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=23.99 E-value=6.1e+02 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.5
Q ss_pred EECCEEEEEeecccEEEEEECCCCce
Q 016239 222 LFRGRFYVFGIYSFSVSSFDLKKHVW 247 (392)
Q Consensus 222 ~~~g~ly~~gg~~~~i~~yd~~~~~W 247 (392)
-.+..|++-=|++..|..||..+..-
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred CCccceEEEecccceEEEeecccccc
Confidence 34788999989999999999986643
No 251
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=23.61 E-value=6.7e+02 Score=24.17 Aligned_cols=181 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred cCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc-----ceEecCCcCceeecCCCCcCccCceEE
Q 016239 71 HNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR-----FGFSRILNTSWHLTSPLRFSRINPLVG 145 (392)
Q Consensus 71 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-----~~ynp~~~~~W~~~~~~~~~r~~~~~~ 145 (392)
...+...+.++++|-..+---++.-+.....-+++--.++..|+..=. ++.|...-..=+.+..+..|-..--+-
T Consensus 399 ~~~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLH 478 (603)
T COG4880 399 TSEDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLH 478 (603)
T ss_pred ccCCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhcc
Q ss_pred EEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCC-------------CCCeecCCCCCCCCCCC
Q 016239 146 VFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPH-------------SDSWELCPPLPADFRSG 212 (392)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~-------------~~~W~~~~~~~~~~~~~ 212 (392)
-+. ++.+.-+|-. +....+-.||.. ++-|+.+ ++.
T Consensus 479 pig----------------en~~lGvG~~---------~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspv------f~d- 526 (603)
T COG4880 479 PIG----------------ENRLLGVGAY---------QGGVKISLFDISDLAAPKEVSNYTLSNAWSPV------FYD- 526 (603)
T ss_pred ccC----------------CCcEEEeecc---------cCCceEEEEeccCCCCchhhhheehhhhcchh------hhc-
Q ss_pred CCccceeeEEEC---CEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 213 YSSQYLSSALFR---GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 213 ~~~~~~~~~~~~---g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
|.+-..+ +.+|+-.+..+.|+.+.-..+.=..-..-.+..+. ...++.||++| ..++|.|
T Consensus 527 -----hHAFl~d~~~~ifFlPay~~gyif~iedg~kl~k~~e~k~na~RA----~fi~dylY~vg--------~~ev~~l 589 (603)
T COG4880 527 -----HHAFLYDPEAEIFFLPAYLGGYIFFIEDGSKLRKRAERKLNADRA----FFIKDYLYLVG--------GNEVWKL 589 (603)
T ss_pred -----cceeecCCcccEEEecccCccEEEEEecCceeeehhhhcccceee----EEecceEEEec--------cceeEEe
Q ss_pred ecCccceEecccC
Q 016239 290 DELSMEFSEIAIM 302 (392)
Q Consensus 290 d~~~~~W~~~~~~ 302 (392)
| .++|+.++.+
T Consensus 590 d--enswe~Vge~ 600 (603)
T COG4880 590 D--ENSWEVVGEA 600 (603)
T ss_pred c--cchHhhhhhe
No 252
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=23.30 E-value=7.3e+02 Score=24.50 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=45.9
Q ss_pred ECCEEEEEeecccEEEEEECCCC-----ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239 223 FRGRFYVFGIYSFSVSSFDLKKH-----VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297 (392)
Q Consensus 223 ~~g~ly~~gg~~~~i~~yd~~~~-----~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~ 297 (392)
.+|...+.-|+++.+-++|+..- .|+-++.+.+ ...++..-+++|++.|..-........++.||..+ ..
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t--~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT--LD 448 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhhhcCCCccCC---CCccccCCCceEEEecccccCCCCCceEEEEeccc--ee
Confidence 47888888888888888887542 3444433322 22233566999999986544444445566667553 44
Q ss_pred ecccCC
Q 016239 298 EIAIMP 303 (392)
Q Consensus 298 ~~~~~p 303 (392)
.+..++
T Consensus 449 ~v~ki~ 454 (641)
T KOG0772|consen 449 TVYKID 454 (641)
T ss_pred eEEEec
Confidence 444443
No 253
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=23.21 E-value=3.4e+02 Score=24.78 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=39.9
Q ss_pred CCEEEEEeecccEEEEEECCCCceeecccCCCCccccee-EEe--eCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239 224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSF-LIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSME 295 (392)
Q Consensus 224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~-~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~ 295 (392)
.|.+.++|-....+..||..+-+--.-.. |......+. -|- ..++||+.|..++ .+.+| |-..+.
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG----~Iklw--DGVS~r 294 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG----AIKLW--DGVSNR 294 (430)
T ss_pred CCceEEEecCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCC----cEEee--ccccHH
Confidence 57777778777789999998765433332 332222221 122 2789999986554 57777 655543
No 254
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=22.06 E-value=5.4e+02 Score=22.91 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=34.4
Q ss_pred eeEEECCEEEEEeecc------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEe
Q 016239 219 SSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGM 275 (392)
Q Consensus 219 ~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg 275 (392)
+.-..+|+||+..... ..+.+-+..-+.|+.+.-+.......--....++.||++|.
T Consensus 195 CvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 195 CVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred hhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 3345799999995322 25666677778899886554433333334677999999985
No 255
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=21.75 E-value=5.3e+02 Score=23.30 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=33.7
Q ss_pred cceeeEEECCEEEEEeecccEEEEEECCCC-ceeecccCCC---CcccceeEEeeCCeEEEEE
Q 016239 216 QYLSSALFRGRFYVFGIYSFSVSSFDLKKH-VWSEVQTLRP---PGVMFSFLIASPNMLVLAG 274 (392)
Q Consensus 216 ~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~-~W~~i~~~~~---~~~~~~~~~~~~g~l~v~g 274 (392)
.....+.+||+||.+...++.|+..+-.+. -|-.+..-.. .+...--+++-+++|||.+
T Consensus 55 ELSELv~FngkLys~DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs 117 (291)
T PF06079_consen 55 ELSELVVFNGKLYSFDDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGS 117 (291)
T ss_dssp -EEEEEEETTEEEEEETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE-
T ss_pred eeeeeeeECCEEeeeeCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeecc
Confidence 456788999999999988887666554311 2443433222 1222223677799999866
No 256
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=21.24 E-value=6.5e+02 Score=23.12 Aligned_cols=55 Identities=18% Similarity=0.364 Sum_probs=32.9
Q ss_pred CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239 267 PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN 335 (392)
Q Consensus 267 ~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 335 (392)
++.||...-.. .+++|+ |. +|.++. ++.. |.+-.-+.++..+.+..++++|||.=
T Consensus 151 ~~~LYaadF~~----g~IDVF--d~---~f~~~~-~~g~----F~DP~iPagyAPFnIqnig~~lyVtY 205 (336)
T TIGR03118 151 GDYLYAANFRQ----GRIDVF--KG---SFRPPP-LPGS----FIDPALPAGYAPFNVQNLGGTLYVTY 205 (336)
T ss_pred CceEEEeccCC----CceEEe--cC---cccccc-CCCC----ccCCCCCCCCCCcceEEECCeEEEEE
Confidence 56777765321 256665 53 466553 2221 33322244578899999999999963
No 257
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=21.17 E-value=7.3e+02 Score=23.71 Aligned_cols=98 Identities=18% Similarity=0.304 Sum_probs=47.0
Q ss_pred CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE---CCEEEEEeecccEEEEEE
Q 016239 165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF---RGRFYVFGIYSFSVSSFD 241 (392)
Q Consensus 165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~g~ly~~gg~~~~i~~yd 241 (392)
+|+..+-|+. .+++.++|....+= +..||.. ..- .+-|.+ .|.+.+.+++++.+-.|.
T Consensus 356 NGy~lATgs~-----------Dnt~kVWDLR~r~~--ly~ipAH-~nl-----VS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 356 NGYHLATGSS-----------DNTCKVWDLRMRSE--LYTIPAH-SNL-----VSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred CceEEeecCC-----------CCcEEEeeeccccc--ceecccc-cch-----hhheEecccCCeEEEEcccCcceeeec
Confidence 6666666664 22677777654332 3334432 111 111222 466777777666555553
Q ss_pred CCCCceeecccCCCCccc-ceeEEeeCCeEEEEEeecCCCCCceeEE
Q 016239 242 LKKHVWSEVQTLRPPGVM-FSFLIASPNMLVLAGMCNAPRGPSFNLW 287 (392)
Q Consensus 242 ~~~~~W~~i~~~~~~~~~-~~~~~~~~g~l~v~gg~~~~~~~~~~v~ 287 (392)
+..|+.+..+...... ...-...++..++.++.+. ++.+|
T Consensus 417 --~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR----T~KLW 457 (459)
T KOG0272|consen 417 --TRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR----TIKLW 457 (459)
T ss_pred --CCCcccchhhcCCccceEEEEeccCCceEEEeccCc----eeeec
Confidence 3456666555432111 1111223555555554433 45555
No 258
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.12 E-value=4.4e+02 Score=27.24 Aligned_cols=67 Identities=21% Similarity=0.408 Sum_probs=35.3
Q ss_pred eeeEEECCE-EEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239 218 LSSALFRGR-FYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV 289 (392)
Q Consensus 218 ~~~~~~~g~-ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~ 289 (392)
.++.++.|- ..++|+.++.+..||..+..--+.-.... +.--......+++=++.|+.+. ++.+|.+
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd-gaIWsi~~~pD~~g~vT~saDk----tVkfWdf 483 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD-GAIWSISLSPDNKGFVTGSADK----TVKFWDF 483 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc-cceeeeeecCCCCceEEecCCc----EEEEEeE
Confidence 556666554 55557777899999997654322211111 1111111233555566665443 5677755
No 259
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=20.18 E-value=4.6e+02 Score=26.19 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.0
Q ss_pred eeeeeCCCCceeeCCCCCCC------CCcce-EEeecceEEeecCcceEecCCcCceeecCCCC
Q 016239 80 SFAFDPASNSWFHLPPAQEP------RAGSC-FIGANGFFFTTTPRFGFSRILNTSWHLTSPLR 136 (392)
Q Consensus 80 ~~~yd~~~~~W~~~~~~~~~------r~~~~-~~~~~g~i~v~gg~~~ynp~~~~~W~~~~~~~ 136 (392)
+..-.|....|+.+++.+.- ..+.. ++.-+|.++..-|+-+.||. ...|+.++...
T Consensus 210 vs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~-GdsWkdI~tP~ 272 (705)
T KOG3669|consen 210 VSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE-GDSWKDIVTPR 272 (705)
T ss_pred ccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCC-CchhhhccCcc
Confidence 34467888899888765511 01122 23448999999999999999 89999776543
Done!