BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016243
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1
Length = 350
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 156/285 (54%), Gaps = 42/285 (14%)
Query: 72 PGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDP 131
P Q GR++ALI+G++Y + ++L+GCINDA + LTN + + IV+LT++
Sbjct: 44 PYQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQN 103
Query: 132 DPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFE 191
D ++ PT+ NM A+ WL++ QP DSL H+SGHG Q + +G+E DG D+ + PVDFE
Sbjct: 104 DLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFE 163
Query: 192 TQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLCRMDRQGKY--IWED--- 246
TQG I+DDE++ +V+PL +G RL A+ D+CHSGTVLDLP+ K IW+D
Sbjct: 164 TQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGIIKEPNIWKDVGQ 223
Query: 247 -------------------------HRPRSGMWKGT----------SGGEAISFSGCDDN 271
+ GM S + + SG DN
Sbjct: 224 DGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDN 283
Query: 272 QTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTI 316
QTSAD A+ +TGAM+++FI+ + +Y S+L +MR +
Sbjct: 284 QTSAD--AVEDGQNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKEL 326
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity
And Activation
Length = 367
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 9/219 (4%)
Query: 63 APSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESS 122
A + H P P RAL +G++Y T+ L GC ND + M L R P +
Sbjct: 74 AKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKR-GLPINE 132
Query: 123 IVMLTEED--PDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDG 180
V+L +ED P +PT+ N+ + WL++ +PGD L FH+SGHG+Q ++ G+ +
Sbjct: 133 AVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKS-RGDSDEK 191
Query: 181 YDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPF--LCRMDR 238
YD+ + PVDF+ G IVDD+I+ L LP RL A+ D HSG+++DLPF +C
Sbjct: 192 YDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGE 251
Query: 239 QGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADT 277
Q R R G G+ + SGC D QTSAD
Sbjct: 252 QASGTPHMKRIREG---NDVLGDVMMISGCADEQTSADV 287
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T.
Brucei
pdb|4AFV|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Calcium Chloride
Length = 367
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 9/219 (4%)
Query: 63 APSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESS 122
A + H P P RAL +G++Y T+ L GC ND + M L + P +
Sbjct: 74 AKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKK-GLPINE 132
Query: 123 IVMLTEED--PDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDG 180
V+L +ED P +PT+ N+ + WL++ +PGD L FH+SGHG+Q ++ G+ +
Sbjct: 133 AVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKS-RGDSDEK 191
Query: 181 YDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPF--LCRMDR 238
YD+ + PVDF+ G IVDD+I+ L LP RL A+ D HSG+++DLPF +C
Sbjct: 192 YDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCAHSGSIMDLPFTYVCSGGE 251
Query: 239 QGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADT 277
Q R R G G+ + SGC D QTSAD
Sbjct: 252 QASGTPHMKRIREG---NDVLGDVMMISGCADEQTSADV 287
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Samarium
Length = 367
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 9/219 (4%)
Query: 63 APSPYNHAPPGQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESS 122
A + H P P RAL +G++Y T+ L GC ND + M L + P +
Sbjct: 74 AKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKK-GLPINE 132
Query: 123 IVMLTEED--PDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDG 180
V+L +ED P +PT+ N+ + WL++ +PGD L FH+SGHG+Q ++ G+ +
Sbjct: 133 AVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKS-RGDSDEK 191
Query: 181 YDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPF--LCRMDR 238
YD+ + PVDF+ G IVDD+I+ L LP RL A+ D HSG+++DLPF +C
Sbjct: 192 YDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGE 251
Query: 239 QGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADT 277
Q R R G G+ + SGC D QTSAD
Sbjct: 252 QASGTPHMKRIREG---NDVLGDVMMISGCADEQTSADV 287
>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|B Chain B, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|C Chain C, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
Length = 285
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 135 KRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQG 194
K T+ + A+ + GD +SGHG Q + + +E DG DET C D G
Sbjct: 53 KAATRAKVIDAIGKAAKALGKGDIFXLSYSGHGGQVPDTSNDEPDGVDETWCLFD----G 108
Query: 195 MIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPF 232
++DDE+ L+ G R+ D+CHSGTV+ +
Sbjct: 109 ELIDDEL-YALLGKFAAGVRVLVFSDSCHSGTVVKXAY 145
>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
Length = 408
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 117 KFPESSIVMLTEEDPDPLKRPTKYNMRMALYW 148
+F E ++ L E+ P LK P Y++R + W
Sbjct: 236 RFAEGILLTLIEDGPKALKEPENYDVRANVMW 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,052,589
Number of Sequences: 62578
Number of extensions: 426076
Number of successful extensions: 792
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 8
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)