Query 016243
Match_columns 392
No_of_seqs 279 out of 1362
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f6o_A Metacaspase-1; rossmann 100.0 2.3E-58 7.9E-63 456.6 24.9 262 74-379 46-349 (350)
2 4af8_A Metacaspase MCA2; hydro 100.0 4.4E-55 1.5E-59 435.3 27.3 262 75-380 86-356 (367)
3 3bij_A Uncharacterized protein 100.0 7.6E-42 2.6E-46 331.5 21.1 216 80-316 2-251 (285)
4 3uoa_B Mucosa-associated lymph 99.9 1E-26 3.6E-31 233.0 21.9 194 79-317 3-200 (390)
5 1m72_A Caspase-1; caspase, cys 99.7 3.1E-16 1.1E-20 150.8 21.2 198 79-319 30-235 (272)
6 2j32_A Caspase-3; Pro-caspase3 99.7 3.4E-16 1.2E-20 148.7 18.9 198 78-320 13-219 (250)
7 3e4c_A Caspase-1; zymogen, inf 99.7 6.1E-16 2.1E-20 150.8 20.8 206 80-319 59-278 (302)
8 1f1j_A Caspase-7 protease; cas 99.7 7.3E-16 2.5E-20 150.4 21.2 201 78-320 66-275 (305)
9 2nn3_C Caspase-1; cysteine pro 99.7 7.9E-16 2.7E-20 150.4 20.8 198 79-319 58-263 (310)
10 3sir_A Caspase; hydrolase; 2.6 99.7 2.6E-16 8.9E-21 150.3 15.0 200 79-319 18-225 (259)
11 4ehd_A Caspase-3; caspase, apo 99.7 1.9E-15 6.4E-20 145.6 20.7 198 78-320 41-247 (277)
12 1nw9_B Caspase 9, apoptosis-re 99.7 4.7E-15 1.6E-19 142.8 22.8 232 78-339 18-272 (277)
13 3od5_A Caspase-6; caspase doma 99.7 8E-15 2.7E-19 141.3 22.0 205 78-320 18-237 (278)
14 3h11_B Caspase-8; cell death, 99.7 6.8E-15 2.3E-19 141.3 20.8 208 78-320 14-238 (271)
15 2fp3_A Caspase NC; apoptosis, 99.7 5.8E-15 2E-19 144.7 20.6 206 80-320 60-287 (316)
16 2h54_A Caspase-1; allosteric s 99.5 4.3E-13 1.5E-17 121.1 14.6 120 80-225 42-169 (178)
17 3h11_A CAsp8 and FADD-like apo 99.1 9.7E-10 3.3E-14 105.4 12.9 197 79-320 41-246 (272)
18 1pyo_A Caspase-2; apoptosis, c 98.9 2.6E-08 9E-13 88.8 14.7 119 78-225 30-157 (167)
19 2dko_A Caspase-3; low barrier 98.8 6.9E-08 2.4E-12 84.3 13.6 117 79-225 14-138 (146)
20 1qtn_A Caspase-8; apoptosis, d 98.7 2E-07 7E-12 82.8 14.3 118 79-225 21-153 (164)
21 2ql9_A Caspase-7; cysteine pro 98.5 1.2E-06 4.2E-11 78.4 13.1 117 79-225 42-166 (173)
22 3p45_A Caspase-6; protease, hu 98.5 1.9E-06 6.6E-11 77.5 13.7 117 79-225 42-166 (179)
23 1gh9_A 8.3 kDa protein (gene M 90.8 0.079 2.7E-06 40.2 1.4 34 1-36 1-34 (71)
24 1sc3_B Interleukin-1 beta conv 83.5 3.9 0.00013 31.8 7.3 55 260-319 9-64 (88)
25 1pyo_B Caspase-2; apoptosis, c 81.1 6.3 0.00022 31.6 7.9 57 259-320 14-71 (105)
26 2ql9_B Caspase-7; cysteine pro 80.8 4.8 0.00016 31.7 7.0 56 260-320 11-67 (97)
27 1qtn_B Caspase-8; apoptosis, d 79.1 4.3 0.00015 32.0 6.2 56 260-320 13-70 (95)
28 2dko_B Caspase-3; low barrier 79.0 5.8 0.0002 31.7 7.0 57 259-320 16-73 (103)
29 2xzd_B Caspase-3; hydrolase-pr 79.0 5.6 0.00019 32.7 7.1 56 260-320 16-72 (118)
30 3rjm_B Caspase-2; caspase-2, c 68.8 26 0.00089 28.6 8.6 57 259-320 15-72 (117)
31 1qxf_A GR2, 30S ribosomal prot 68.2 2.6 8.9E-05 31.2 2.1 30 3-32 6-36 (66)
32 2yrc_A Protein transport prote 64.9 3.6 0.00012 29.8 2.3 35 2-36 7-47 (59)
33 3j20_W 30S ribosomal protein S 63.9 3.4 0.00012 30.3 2.0 29 3-31 14-43 (63)
34 2xzm_6 RPS27E; ribosome, trans 60.4 4.2 0.00014 31.4 2.0 29 3-31 31-60 (81)
35 7aat_A Aspartate aminotransfer 58.1 15 0.0005 35.0 6.1 55 100-162 72-129 (401)
36 2ct7_A Ring finger protein 31; 50.0 11 0.00036 29.0 2.9 32 4-35 25-56 (86)
37 4ayb_P DNA-directed RNA polyme 49.7 7.7 0.00026 26.8 1.7 33 4-36 3-39 (48)
38 2apo_B Ribosome biogenesis pro 49.6 11 0.00039 27.3 2.8 28 3-36 5-32 (60)
39 1pft_A TFIIB, PFTFIIBN; N-term 49.6 8.8 0.0003 26.2 2.1 29 4-32 5-34 (50)
40 2jr6_A UPF0434 protein NMA0874 49.6 10 0.00035 28.2 2.6 35 2-36 6-40 (68)
41 3u5c_b RP61, YS20, 40S ribosom 49.3 6.1 0.00021 30.5 1.3 29 3-31 33-62 (82)
42 2js4_A UPF0434 protein BB2007; 49.0 11 0.00037 28.2 2.7 35 2-36 6-40 (70)
43 1cvr_A Gingipain R, RGPB; casp 48.8 38 0.0013 33.9 7.5 75 79-170 140-215 (435)
44 2pk7_A Uncharacterized protein 48.8 10 0.00034 28.3 2.4 35 2-36 6-40 (69)
45 2i0x_A Hypothetical protein PF 48.7 50 0.0017 25.2 6.6 52 105-165 14-66 (85)
46 3j20_Y 30S ribosomal protein S 48.5 8.1 0.00028 26.9 1.8 27 5-31 20-46 (50)
47 3iz6_X 40S ribosomal protein S 47.8 7.2 0.00025 30.4 1.5 29 3-31 35-64 (86)
48 3efo_B SEC24 related gene fami 47.4 7.5 0.00026 42.0 2.2 35 3-37 97-135 (770)
49 2hf1_A Tetraacyldisaccharide-1 46.4 9.5 0.00033 28.3 2.0 35 2-36 6-40 (68)
50 3eh2_A Protein transport prote 46.1 8.1 0.00028 41.7 2.2 35 3-37 93-131 (766)
51 3h0g_L DNA-directed RNA polyme 44.7 11 0.00036 27.7 1.9 28 4-32 21-48 (63)
52 3eh1_A Protein transport prote 43.8 12 0.00039 40.4 2.9 32 4-36 85-120 (751)
53 3ca8_A Protein YDCF; two domai 43.1 44 0.0015 31.0 6.6 45 101-151 95-139 (266)
54 1twf_I B12.6, DNA-directed RNA 42.7 14 0.00047 30.4 2.6 35 1-35 1-39 (122)
55 1pcx_A Protein transport prote 41.4 12 0.00042 40.5 2.7 33 4-36 112-148 (810)
56 1m2v_B SEC24, protein transpor 40.7 12 0.00043 41.1 2.6 33 4-36 228-264 (926)
57 2jny_A Uncharacterized BCR; st 36.8 19 0.00066 26.6 2.3 35 2-36 8-42 (67)
58 1vq8_Z 50S ribosomal protein L 35.9 10 0.00036 29.3 0.8 28 4-31 27-54 (83)
59 2avu_E Flagellar transcription 34.7 11 0.00036 33.8 0.7 29 1-29 131-161 (192)
60 1dl6_A Transcription factor II 33.9 27 0.00091 24.9 2.6 31 2-32 9-40 (58)
61 1zpw_X Hypothetical protein TT 32.6 61 0.0021 24.9 4.8 55 103-166 16-71 (90)
62 2hd9_A UPF0310 protein PH1033; 31.6 27 0.00093 29.5 2.8 18 149-166 31-48 (145)
63 4es1_A BH0342 protein; ferredo 28.7 72 0.0025 25.2 4.7 58 103-169 22-80 (100)
64 3cai_A Possible aminotransfera 28.4 2.3E+02 0.0078 26.3 9.2 58 102-168 68-125 (406)
65 1k81_A EIF-2-beta, probable tr 27.5 26 0.0009 22.5 1.5 31 5-35 1-34 (36)
66 1twf_L ABC10-alpha, DNA-direct 26.8 21 0.00072 26.6 1.1 25 5-30 29-53 (70)
67 3euc_A Histidinol-phosphate am 26.5 2.9E+02 0.0098 25.2 9.4 52 105-168 69-121 (367)
68 2gbs_A Hypothetical protein RP 25.6 40 0.0014 28.7 2.8 18 148-165 38-55 (145)
69 3ly1_A Putative histidinol-pho 25.5 2.7E+02 0.0092 25.2 8.9 55 102-168 50-104 (354)
70 3oq2_A Crispr-associated prote 25.0 81 0.0028 24.9 4.4 58 102-168 24-82 (103)
71 1zce_A Hypothetical protein AT 25.0 43 0.0015 28.9 2.8 19 147-165 38-56 (155)
72 4hvk_A Probable cysteine desul 24.9 1E+02 0.0036 28.1 5.9 52 102-162 42-94 (382)
73 3sho_A Transcriptional regulat 24.5 2.7E+02 0.0093 23.1 8.1 60 82-168 40-99 (187)
74 1o58_A O-acetylserine sulfhydr 24.2 1.2E+02 0.0043 28.0 6.3 35 137-171 266-300 (303)
75 2ar1_A Hypothetical protein; s 24.1 47 0.0016 29.1 3.0 19 148-166 54-72 (172)
76 2dr1_A PH1308 protein, 386AA l 24.0 3E+02 0.01 25.1 9.0 54 102-167 52-106 (386)
77 2k4x_A 30S ribosomal protein S 24.0 35 0.0012 24.1 1.7 29 4-32 18-46 (55)
78 3h0g_I DNA-directed RNA polyme 23.3 54 0.0018 26.4 3.0 36 1-36 1-40 (113)
79 1ve1_A O-acetylserine sulfhydr 23.2 1.4E+02 0.0047 27.6 6.4 36 137-172 262-297 (304)
80 2aus_D NOP10, ribosome biogene 23.2 49 0.0017 23.9 2.4 27 4-36 5-31 (60)
81 2eve_A Hypothetical protein ps 23.2 51 0.0018 28.4 3.0 18 148-165 36-53 (157)
82 3ijw_A Aminoglycoside N3-acety 23.0 67 0.0023 30.0 4.0 26 137-164 15-40 (268)
83 1vjo_A Alanine--glyoxylate ami 23.0 2.9E+02 0.0099 25.5 8.7 54 103-168 67-121 (393)
84 3op7_A Aminotransferase class 22.5 2.7E+02 0.0091 25.6 8.3 51 106-168 66-117 (375)
85 2jrp_A Putative cytoplasmic pr 22.2 45 0.0015 25.6 2.1 27 4-32 2-28 (81)
86 3f9t_A TDC, L-tyrosine decarbo 21.8 4.5E+02 0.015 23.8 10.3 59 102-169 68-136 (397)
87 3isl_A Purine catabolism prote 21.7 1.5E+02 0.0053 27.5 6.5 55 102-167 43-97 (416)
88 3n0l_A Serine hydroxymethyltra 21.6 1.8E+02 0.0063 27.1 7.0 49 107-168 75-123 (417)
89 3sma_A FRBF; N-acetyl transfer 21.6 74 0.0025 30.1 4.0 28 135-164 20-47 (286)
90 2nut_A Protein transport prote 21.6 47 0.0016 35.6 3.0 34 3-36 61-100 (769)
91 2jne_A Hypothetical protein YF 21.2 44 0.0015 26.6 2.0 30 2-33 30-59 (101)
92 1o4s_A Aspartate aminotransfer 21.2 2.9E+02 0.0098 25.7 8.3 55 102-168 81-137 (389)
93 1m2o_A SEC23, protein transpor 21.2 46 0.0016 35.8 2.8 34 3-36 52-91 (768)
94 2p5d_A UPF0310 protein mjecl36 20.9 60 0.002 27.4 3.0 16 149-165 34-49 (147)
95 3tzy_A Polyketide synthase PKS 20.7 1.5E+02 0.0051 29.9 6.4 59 105-173 87-155 (491)
96 2nyg_A YOKD protein; PFAM02522 20.7 79 0.0027 29.5 4.0 26 137-164 13-38 (273)
97 1faq_A RAF-1; transferase, ser 20.6 58 0.002 21.9 2.3 27 4-35 14-40 (52)
98 1p91_A Ribosomal RNA large sub 20.5 43 0.0015 29.9 2.1 27 4-32 2-28 (269)
99 1svv_A Threonine aldolase; str 20.2 2.6E+02 0.0089 25.2 7.6 56 102-169 48-103 (359)
No 1
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-58 Score=456.61 Aligned_cols=262 Identities=40% Similarity=0.723 Sum_probs=203.9
Q ss_pred CCCCCCCceEEEEEEeCCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhC
Q 016243 74 QPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC 153 (392)
Q Consensus 74 ~~~~~~~~k~ALlIGI~Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~ 153 (392)
.++...++|+|||||||||+...+|++|+|||+.|+++|++++||++++|++|+|++.++...||++||+++|+||++++
T Consensus 46 ~~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a 125 (350)
T 4f6o_A 46 QYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDA 125 (350)
T ss_dssp CCCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTC
T ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhC
Confidence 35677899999999999888889999999999999999999899999999999998766677899999999999999999
Q ss_pred CCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEeCCCCCCCCCCcch
Q 016243 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFL 233 (392)
Q Consensus 154 ~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~~l~~g~~l~vIlD~C~SG~~~~~p~~ 233 (392)
++||+|||||||||.+.++.+|+|.||+||+|||+|++..|.|+|+||.++|+++++++++|++|+||||||+++|+|+.
T Consensus 126 ~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~ 205 (350)
T 4f6o_A 126 QPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYT 205 (350)
T ss_dssp CTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEE
T ss_pred CCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCcccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999997
Q ss_pred hcccccCcc----ccccCCC--------------------CCCcc------------------cccCCCCEEEEEecCCC
Q 016243 234 CRMDRQGKY----IWEDHRP--------------------RSGMW------------------KGTSGGEAISFSGCDDN 271 (392)
Q Consensus 234 ~~~~r~g~~----~~e~~~p--------------------~~~~~------------------k~~~~g~~i~~SAc~~~ 271 (392)
++. .|.+ .|++... ..+++ .+++++.+|+||||.++
T Consensus 206 ~~~--~g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SgCkD~ 283 (350)
T 4f6o_A 206 YST--KGIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDN 283 (350)
T ss_dssp EET--TEEEECCCC---------------------------------------------------CCCSEEEEEEEEC--
T ss_pred ccc--ccccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccchhhhhhccCCCCCEEEEEecCCC
Confidence 753 2211 2332110 00011 13557889999999999
Q ss_pred CcccccccCCCCCCCChhHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCCCCcccCCcccccceeeeccCCCCCCCccc
Q 016243 272 QTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQ 351 (392)
Q Consensus 272 q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~~~iT~~~L~~~vr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 351 (392)
|+|+|+...| ..+|+|||+||++|+.++.+||.+|++.||+.|+.. ..|
T Consensus 284 QtSaD~~~~g--~~~GAmTyafi~aL~~~p~~tY~~Ll~~~r~~L~~k-----------------------------ysQ 332 (350)
T 4f6o_A 284 QTSADAVEDG--QNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKELAGK-----------------------------YSQ 332 (350)
T ss_dssp -------------CCCHHHHHHHHHHHHCCCCBHHHHHHHHHHHHTTT-----------------------------CSC
T ss_pred CchhhhccCC--ceeehhHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-----------------------------CCC
Confidence 9999998765 479999999999999988899999999999999742 359
Q ss_pred ceEEeeccccccCCCCCccccccchhhh
Q 016243 352 VFMFVMFANCYGYGLSSSLFDRFVSRLL 379 (392)
Q Consensus 352 ~p~l~~~~~~~~~~~~~~~~d~~~~~~~ 379 (392)
+|||+ +|.++|++. +|+
T Consensus 333 ~PQLs----------~s~~~d~~~-~f~ 349 (350)
T 4f6o_A 333 KPQLS----------SSHPIDVNL-QFI 349 (350)
T ss_dssp EEEEE----------ESSCCCTTS-BCC
T ss_pred Cceec----------ccCCCCCCc-ccc
Confidence 99999 999999977 354
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=100.00 E-value=4.4e-55 Score=435.26 Aligned_cols=262 Identities=34% Similarity=0.566 Sum_probs=215.1
Q ss_pred CCCCCCceEEEEEEeCCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCC--CCCCCccHHHHHHHHHHHHHh
Q 016243 75 PPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDP--DPLKRPTKYNMRMALYWLIQG 152 (392)
Q Consensus 75 ~~~~~~~k~ALlIGI~Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~--~~~~~pT~~nI~~al~~L~~~ 152 (392)
++...++|||||||||||+...+|++|+|||++|+++|++ +||+.++|++|+|++. +....||++||+++|+||+++
T Consensus 86 ~~~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~-~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~ 164 (367)
T 4af8_A 86 TPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQK-RGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKD 164 (367)
T ss_dssp CCCTTCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHH-TTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHHH-cCCCchheEEecccccccccccCCCHHHHHHHHHHHHHh
Confidence 4566899999999999888889999999999999999975 8999999999998743 234579999999999999999
Q ss_pred CCCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEeCCCCCCCCCCcc
Q 016243 153 CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPF 232 (392)
Q Consensus 153 ~~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~~l~~g~~l~vIlD~C~SG~~~~~p~ 232 (392)
+++||+|||||||||.+.++. ++|.||+||+|||+|++.+|.|+|+||.++|++++++++++++|+||||||+++++|+
T Consensus 165 a~pgD~l~fyFSGHG~q~~d~-~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt~~dlp~ 243 (367)
T 4af8_A 165 AKPGDVLFFHYSGHGTQCKSR-GDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPF 243 (367)
T ss_dssp CCTTCEEEEEEESCEEEECCC------CCEEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEEECTTCCCCTTCSE
T ss_pred CCCCCEEEEEEcCCcCccCCC-CCCCCCcceEEEeecCCcCCCccHHHHHHHHHHhccCCCEEEEEEeCCCCCccccccc
Confidence 999999999999999999885 6888999999999999888899999999998899998999999999999999999998
Q ss_pred hhcc--cccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccC-----CCCCCCChhHHHHHHHHHcCCCCCH
Q 016243 233 LCRM--DRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSAL-----SKITSTGAMTYSFIQAIERGHGATY 305 (392)
Q Consensus 233 ~~~~--~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~-----g~~~~~G~FT~~Ll~aL~~~~~iT~ 305 (392)
.++. .+.+...+...+.+. ..++++.+|+||||.++|+|+|.... ++...+|+|||+|+++|++++.+||
T Consensus 244 ~~~~r~~~~~~~~~~~~~~~~---~~~~~~~vi~~Sac~d~QtSad~~~~~~f~~g~~~~~GafTyali~~L~~~~~~Ty 320 (367)
T 4af8_A 244 TYVCSGGEQASGTPHMKRIRE---GNDVLGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITCMLMNNQSLSY 320 (367)
T ss_dssp EEECCTTCCTTSCCCCEECSS---CCCCCSEEEEEEEECCCSCCCCCC-------CCCBCBSHHHHHHHHHHHCCSCCBH
T ss_pred ccccccccccccchhhhhhcc---CCCCCCCEEEEEecCCCCchhhhhccccccccccCcccHHHHHHHHHHHhCCCCCH
Confidence 6432 112211121111111 12456789999999999999997642 1235799999999999999888999
Q ss_pred HHHHHHHHHHHhccCCCCCcccCCcccccceeeeccCCCCCCCcccceEEeeccccccCCCCCccccccchhhhh
Q 016243 306 GSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQVFMFVMFANCYGYGLSSSLFDRFVSRLLL 380 (392)
Q Consensus 306 ~~L~~~vr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~p~l~~~~~~~~~~~~~~~~d~~~~~~~~ 380 (392)
.+|+++|++.|++.. ..|+|||+ +|.+||+|+. |.+
T Consensus 321 ~~Ll~~vr~~l~~~g----------------------------~~Q~PqLs----------ss~~~d~~~~-F~l 356 (367)
T 4af8_A 321 GKLLIETRDMLKRKR----------------------------FKQVPQLS----------ASKAIDLDQT-FSL 356 (367)
T ss_dssp HHHHHHHHHHHHHTT----------------------------BSCEEEEE----------ESSCBCTTSB-CCS
T ss_pred HHHHHHHHHHHHHhC----------------------------CCCCceec----------cCCCCCCCce-eEe
Confidence 999999999998652 36999999 9999999874 543
No 3
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=100.00 E-value=7.6e-42 Score=331.46 Aligned_cols=216 Identities=26% Similarity=0.392 Sum_probs=171.3
Q ss_pred CceEEEEEEeCC-----C-CCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhC
Q 016243 80 GRKRALIVGVSY-----R-HTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC 153 (392)
Q Consensus 80 ~~k~ALlIGI~Y-----~-~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~ 153 (392)
++++|||||||+ | +...+|++|+|||+.|+++|+ ++||+ |++|++++ ||++||+++|+||++++
T Consensus 2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~-~~Gf~---v~~l~~~~------~t~~~i~~al~~l~~~~ 71 (285)
T 3bij_A 2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAA-ERGFA---VTTLMTKA------ATRAKVIDAIGKAAKAL 71 (285)
T ss_dssp CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHH-HTTCE---EEEEEGGG------CCHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHH-HcCCc---eEEecCCc------cCHHHHHHHHHHHHHhC
Confidence 589999999994 2 345799999999999999996 58997 77777765 99999999999999999
Q ss_pred CCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEeCCCCCCCCC-Ccc
Q 016243 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLD-LPF 232 (392)
Q Consensus 154 ~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~~l~~g~~l~vIlD~C~SG~~~~-~p~ 232 (392)
+++|++||||||||.+.++.+|+|.||++++|||+|. .|.++||.++| +.+++++++++||||||||++.+ +|+
T Consensus 72 ~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~----~i~~~~l~~~l-~~l~~~~~~~vilD~C~SG~~~~~~p~ 146 (285)
T 3bij_A 72 GKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG----ELIDDELYALL-GKFAAGVRVLVFSDSCHSGTVVKMAYY 146 (285)
T ss_dssp CTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS----EEEHHHHHHHH-TTSCSSCEEEEEEECCCCCCHHHHHHT
T ss_pred CCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC----CccHHHHHHHH-HhccCCCeEEEEEecCCCCcccccccc
Confidence 9999999999999999988889999999999999994 58899999988 67776789999999999999987 565
Q ss_pred hhccccc------Cc--ccccc----------CCC--------CCCcccccCCCCEEEEEecCCCCcccccccCCCCCCC
Q 016243 233 LCRMDRQ------GK--YIWED----------HRP--------RSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITST 286 (392)
Q Consensus 233 ~~~~~r~------g~--~~~e~----------~~p--------~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~ 286 (392)
..+.... |. ..+.. ... .........++++++||||+++|+|+|.. .+
T Consensus 147 ~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~------~~ 220 (285)
T 3bij_A 147 NGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGA------FN 220 (285)
T ss_dssp TC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECS------SS
T ss_pred ccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhcccccccCCCCCEEEEEeCCCCccccccc------cC
Confidence 3321000 10 00100 000 00000122356789999999999999963 68
Q ss_pred ChhHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 016243 287 GAMTYSFIQAIERGH-GATYGSMLNSMRSTI 316 (392)
Q Consensus 287 G~FT~~Ll~aL~~~~-~iT~~~L~~~vr~~v 316 (392)
|+||++|+++|+++. .+||.+|+++|++.+
T Consensus 221 G~FT~aLl~~L~~~~~~~s~~~l~~~v~~~~ 251 (285)
T 3bij_A 221 GAFTGQLLRVWKNGLYKGSYRSFHKAIVRRM 251 (285)
T ss_dssp CHHHHHHHHHHGGGTCCSCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhhCCCCcCHHHHHHHHHHhc
Confidence 999999999999754 499999999998755
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.95 E-value=1e-26 Score=232.96 Aligned_cols=194 Identities=15% Similarity=0.163 Sum_probs=151.5
Q ss_pred CCceEEEEEEeCCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCE
Q 016243 79 QGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDS 158 (392)
Q Consensus 79 ~~~k~ALlIGI~Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~ 158 (392)
.++|+||||||+.|....+|+|+++||+.|+++|++ +||+ |.++.| +|+++|+++|++|.++.+++|.
T Consensus 3 A~~r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~~-lGF~---V~~l~D--------lT~~eI~~aL~~f~~~~~~~D~ 70 (390)
T 3uoa_B 3 AKDKVALLIGNMNYREHPKLKAPLVDVYELTNLLRQ-LDFK---VVSLLD--------LTEYEMRNAVDEFLLLLDKGVY 70 (390)
T ss_dssp BSCEEEEEEECCCCSSSCCCSTHHHHHHHHHHHHHH-TTCE---EEEEES--------CCHHHHHHHHHHHHHTCCTTCE
T ss_pred CCCCEEEEEEecCCCCcccCCChHHHHHHHHHHHHH-cCCe---EEEeec--------CCHHHHHHHHHHHHhhCCCCCE
Confidence 368999999999444467999999999999999985 8996 777777 8999999999999999999999
Q ss_pred EEEEEecCccccCCCCCCCCCCcceeEEeccCCCC----CcccHHHHHHhhcCcCCCCCeEEEEEeCCCCCCCCCCcchh
Q 016243 159 LLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQ----GMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLC 234 (392)
Q Consensus 159 llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~----g~i~d~eL~~~L~~~l~~g~~l~vIlD~C~SG~~~~~p~~~ 234 (392)
++|||||||.+..+ ..||+|+|.... ..+..++|.+.|. .++ +...++||||||++...+...
T Consensus 71 ~l~yfsGHG~~~~g---------~~yL~p~Da~~~~~~~~~isl~~Ll~~l~-~~~-~K~kL~ILDACrg~~~~~~~~-- 137 (390)
T 3uoa_B 71 GLLYYAGHGYENFG---------NSFMVPVDAPNPYRSENCLCVQNILKLMQ-EKE-TGLNVFLLDMCRKRNDYDDTI-- 137 (390)
T ss_dssp EEEEEESCEEEETT---------EEEECCTTCCSSCCGGGSEEHHHHHHHHH-HTT-CSEEEEEEESCCCCCTTCCCC--
T ss_pred EEEEEecCccccCC---------cceEEecCCCccccccceeeHHHHHHHHH-hcC-CCceEEEEECCCCCCcccccc--
Confidence 99999999988532 359999998632 3577788888774 343 455689999999964433210
Q ss_pred cccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016243 235 RMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRS 314 (392)
Q Consensus 235 ~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~~~iT~~~L~~~vr~ 314 (392)
.+. . +-....+.++..||.+++.|++... +..++|+||++|+++|++ ..+..+|+.+|++
T Consensus 138 ----~~~----------~--~ip~~ad~Li~yAT~pG~~A~r~~~--d~~~gS~FtqaL~e~L~~--~~dl~~LLt~Vn~ 197 (390)
T 3uoa_B 138 ----PIL----------D--ALKVTANIVFGYATCQGAEAFEIQH--SGLANGIFMKFLKDRLLE--DKKITVLLDEVAE 197 (390)
T ss_dssp ----CCC----------C--CCCCCSCEEEEESSCTTCCCEECSS--CTTCCCHHHHHHTTTTTC--SSCHHHHHHHHHH
T ss_pred ----ccc----------c--cCcccCCcEEEEEcCCCcEeeecCC--CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHH
Confidence 010 0 0012235667778999999998652 113689999999999998 5899999999999
Q ss_pred HHh
Q 016243 315 TIR 317 (392)
Q Consensus 315 ~v~ 317 (392)
.|.
T Consensus 198 ~Va 200 (390)
T 3uoa_B 198 DMG 200 (390)
T ss_dssp HHT
T ss_pred HHh
Confidence 997
No 5
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=99.73 E-value=3.1e-16 Score=150.78 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=141.1
Q ss_pred CCceEEEEEEeC-CCC-CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 016243 79 QGRKRALIVGVS-YRH-TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQP 155 (392)
Q Consensus 79 ~~~k~ALlIGI~-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-~~~ 155 (392)
.+++.|||||+. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+. .+.
T Consensus 30 ~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~~ 97 (272)
T 1m72_A 30 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 97 (272)
T ss_dssp SEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred CCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhcCC
Confidence 457899999998 654 36799999999999999998 58996 777776 8999999999999876 478
Q ss_pred CCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCCCc
Q 016243 156 GDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLP 231 (392)
Q Consensus 156 gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~~p 231 (392)
.|.++|||.|||.. .+|++.|. .+.-++|.+.+.. .|....| ++|||||+........
T Consensus 98 ~d~~v~~~lsHG~~-------------~~i~~~D~----~v~l~~i~~~f~~~~cpsL~gKPK-lffiqACRg~~~~~g~ 159 (272)
T 1m72_A 98 ADCLLVAVLTHGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTLAGKPK-LFFIQACQGDRLDGGI 159 (272)
T ss_dssp EEEEEEEEESCEET-------------TEEECSSS----EECTTHHHHTTSTTTCGGGTTSCE-EEEEESCSSSBCBCCE
T ss_pred CCEEEEEEcCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhhcCCce-EEEEeCCCCCcccCCc
Confidence 89999999999963 18999985 3555677766631 1322234 6999999954332110
Q ss_pred chhcccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHHHH
Q 016243 232 FLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLN 310 (392)
Q Consensus 232 ~~~~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L~~ 310 (392)
...+...++. + ....+-....+.++..|+.++..|++.. ..++.|+.+|++.|+. ++.....+|+.
T Consensus 160 ~~~~~~~d~~-------~-~~~~~iP~~aD~Li~ysT~pG~vs~r~~-----~~GS~fiq~L~~~l~~~~~~~dl~~ilt 226 (272)
T 1m72_A 160 TLSRTETDGS-------P-STSYRIPVHADFLIAFSTVPGYFSWRNT-----TRGSWFMQALCEELRYAGTERDILTLLT 226 (272)
T ss_dssp EEEC-----------------CEEECTTCSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred cccccccccc-------c-ccccccCCCCCEEEEEeCCCCcEeecCC-----CCCCHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 0000000110 0 0011112234566667788999999875 3679999999999997 34588999999
Q ss_pred HHHHHHhcc
Q 016243 311 SMRSTIRNT 319 (392)
Q Consensus 311 ~vr~~v~~~ 319 (392)
.|+..|...
T Consensus 227 ~V~~~V~~~ 235 (272)
T 1m72_A 227 FVCQKVALD 235 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
No 6
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=99.71 E-value=3.4e-16 Score=148.73 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=142.4
Q ss_pred CCCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhC-
Q 016243 78 AQGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC- 153 (392)
Q Consensus 78 ~~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~- 153 (392)
..+++.|||||+. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+..
T Consensus 13 ~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~~ 80 (250)
T 2j32_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDH 80 (250)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCC
T ss_pred CCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhc
Confidence 3468899999998 654 25799999999999999998 58996 777777 89999999999998874
Q ss_pred CCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcCc----CCCCCeEEEEEeCCCCCCCCC
Q 016243 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRP----LPRGARLHAIIDACHSGTVLD 229 (392)
Q Consensus 154 ~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~~----l~~g~~l~vIlD~C~SG~~~~ 229 (392)
+..|.++|||.|||.+ | .+.+.|. .+.-++|...+... |....| ++|||||+......
T Consensus 81 ~~~d~~v~~~lsHG~~-----g--------~i~~~D~----~v~l~~i~~~f~~~~cp~L~gKPK-lf~iqACRg~~~~~ 142 (250)
T 2j32_A 81 SKRSSFVCVLLSHGEE-----G--------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTELDC 142 (250)
T ss_dssp TTEEEEEEEEESCEET-----T--------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCSEEECBC
T ss_pred cCCCEEEEEECCCCCC-----C--------eEEecCC----cEEHHHHHHHhccccChhHcCCCe-EEEEecccCCcccC
Confidence 6789999999999983 1 5677774 56667887766321 332345 69999998543321
Q ss_pred CcchhcccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHH
Q 016243 230 LPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSM 308 (392)
Q Consensus 230 ~p~~~~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L 308 (392)
. . ..... ...+. ...+-....+.++..|+.++..|++.. ..++.|+.+|++.|++ .+.....+|
T Consensus 143 g-~----~~~~~-~~~~~----~~~~ip~~aD~Li~ysT~pG~vs~r~~-----~~gS~fiq~L~~~l~~~~~~~dl~~i 207 (250)
T 2j32_A 143 G-I----ATDSG-VDDDM----ACHKIPVEADFLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHI 207 (250)
T ss_dssp C-C----CC---------------CCCCTTTTEEEEESSCTEECCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHH
T ss_pred C-c----cccCC-ccccc----cccccCCCCCEEEEEeCCCccEEecCC-----CCCcHHHHHHHHHHHHhCCCCCHHHH
Confidence 1 0 00000 00000 001111234566667788999999876 3679999999999987 456899999
Q ss_pred HHHHHHHHhccC
Q 016243 309 LNSMRSTIRNTD 320 (392)
Q Consensus 309 ~~~vr~~v~~~~ 320 (392)
+..|+..|....
T Consensus 208 lt~V~~~V~~~~ 219 (250)
T 2j32_A 208 LTRVNRKVATEF 219 (250)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
No 7
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=99.71 E-value=6.1e-16 Score=150.75 Aligned_cols=206 Identities=15% Similarity=0.180 Sum_probs=142.8
Q ss_pred CceEEEEEEeCCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHH--hCCCCC
Q 016243 80 GRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ--GCQPGD 157 (392)
Q Consensus 80 ~~k~ALlIGI~Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~--~~~~gD 157 (392)
+++.|||||+..+....++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+ ..+..|
T Consensus 59 ~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~dh~~~d 126 (302)
T 3e4c_A 59 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD 126 (302)
T ss_dssp CCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred CccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhhhccCCCC
Confidence 4789999999944457899999999999999998 58996 777777 899999999999976 356789
Q ss_pred EEEEEEecCccccCCCCCCCCCCcceeEEeccCCC--CCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCCCc
Q 016243 158 SLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFET--QGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLP 231 (392)
Q Consensus 158 ~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~--~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~~p 231 (392)
.++|||.|||.+. +|++.|... ...+..++|.+.+.. .|....| ++|||||+...... .
T Consensus 127 ~~vv~~lsHG~~~-------------~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPK-lffIQACRG~~~~~-~ 191 (302)
T 3e4c_A 127 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPK-VIIIQAARGDSPGV-V 191 (302)
T ss_dssp CEEEEEEEEEETT-------------EEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCE-EEEEEEECSSSCCC-C
T ss_pred EEEEEEeccCcCC-------------eEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCcc-EEEEECCCCCCCCc-c
Confidence 9999999999872 577777531 135677888887742 1222234 69999999654421 1
Q ss_pred chhcccccCcc---ccccCCCC--CCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCH
Q 016243 232 FLCRMDRQGKY---IWEDHRPR--SGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATY 305 (392)
Q Consensus 232 ~~~~~~r~g~~---~~e~~~p~--~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~ 305 (392)
+. .+..+.. ...+.... .+..+-....+.++..|+.++..|++.. ..++.|+.+|++.|+. .+....
T Consensus 192 ~~--~ds~~~~~~~~~~~~~~~~~d~~~~ip~~aDfLi~yST~pG~vS~R~~-----~~GSwFIqaL~~~l~~~~~~~dl 264 (302)
T 3e4c_A 192 WF--KDSVGVSGNLSLPTTEEFEDDAIKKAHIEKDFIAFCSSTPDNVSWRHP-----TMGSVFIGRLIEHMQEYACSCDV 264 (302)
T ss_dssp CC--CCC--------CCCCCCCCCHHHHTSCSSCSEEEEEECCCCCCCSSST-----TCCCHHHHHHHHHHHHHTTTSCH
T ss_pred ee--ccCcccccccccccccccccccccccCCCCCEEEEEeCCCCceeecCC-----CCCcHHHHHHHHHHHHhCCCCCH
Confidence 10 0000000 00000000 0011112234567667788999999876 3678999999999986 345789
Q ss_pred HHHHHHHHHHHhcc
Q 016243 306 GSMLNSMRSTIRNT 319 (392)
Q Consensus 306 ~~L~~~vr~~v~~~ 319 (392)
.+||..|+..|...
T Consensus 265 ~~il~~V~~~v~~~ 278 (302)
T 3e4c_A 265 EEIFRKVRFSFEQP 278 (302)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999988763
No 8
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=99.71 E-value=7.3e-16 Score=150.38 Aligned_cols=201 Identities=12% Similarity=0.108 Sum_probs=141.5
Q ss_pred CCCceEEEEEEeC-CCCC--CCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhC-
Q 016243 78 AQGRKRALIVGVS-YRHT--NHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC- 153 (392)
Q Consensus 78 ~~~~k~ALlIGI~-Y~~~--~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~- 153 (392)
..+++.|||||+. |... ..++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+..
T Consensus 66 ~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h 133 (305)
T 1f1j_A 66 FEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDH 133 (305)
T ss_dssp SSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHHSCG
T ss_pred CCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhc
Confidence 3468899999998 6542 4577899999999999998 58996 777777 89999999999988763
Q ss_pred CCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCC
Q 016243 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLD 229 (392)
Q Consensus 154 ~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~ 229 (392)
+..|.++|||.|||.+ .+|++.|. .+.-++|...+.. .|....| ++|||||+.....+
T Consensus 134 ~~~d~~vv~ilsHG~~-------------~~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~ 195 (305)
T 1f1j_A 134 TNAACFACILLSHGEE-------------NVIYGKDG----VTPIKDLTAHFRGDRSKTLLEKPK-LFFIQACRGTELDD 195 (305)
T ss_dssp GGEEEEEEEEESCEET-------------TEEECSSS----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBC
T ss_pred CCCCEEEEEEecCCCC-------------CeEEecCC----eEEHHHHHHHhhhccChhhcCCce-EEEeccccCCcccC
Confidence 5789999999999985 18999984 4666777765531 1222234 69999999654322
Q ss_pred CcchhcccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHH
Q 016243 230 LPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSM 308 (392)
Q Consensus 230 ~p~~~~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L 308 (392)
.. ..+. +.....+..+ ..+-....+.++..|+.++..|++.. ..++.|+.+|++.|+. ++.....+|
T Consensus 196 g~---~~~~-~~~~~~~~~~---~~~ip~~aD~LiayST~pG~vs~r~~-----~~GS~FiqaL~~~l~~~~~~~dl~~i 263 (305)
T 1f1j_A 196 GI---QADS-GPINDTDANP---RYKIPVEADFLFAYSTVPGYYSWRSP-----GRGSWFVQALCSILEEHGKDLEIMQI 263 (305)
T ss_dssp CB---C-------------------CBCTTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHH
T ss_pred Cc---cccC-Cccccccccc---ccccCCCCCEEEEEECCCCeeccCCC-----CCCCHHHHHHHHHHHhhCCCCCHHHH
Confidence 11 0000 1000000000 01111234566666788999999875 3678999999999987 345789999
Q ss_pred HHHHHHHHhccC
Q 016243 309 LNSMRSTIRNTD 320 (392)
Q Consensus 309 ~~~vr~~v~~~~ 320 (392)
|..|+..|....
T Consensus 264 lt~Vn~~V~~~~ 275 (305)
T 1f1j_A 264 LTRVNDRVARHF 275 (305)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 9
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=99.70 E-value=7.9e-16 Score=150.37 Aligned_cols=198 Identities=13% Similarity=0.114 Sum_probs=141.8
Q ss_pred CCceEEEEEEeC-CCC-CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 016243 79 QGRKRALIVGVS-YRH-TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQP 155 (392)
Q Consensus 79 ~~~k~ALlIGI~-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-~~~ 155 (392)
.+++.||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+. .+.
T Consensus 58 ~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~~ 125 (310)
T 2nn3_C 58 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 125 (310)
T ss_dssp SBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHSSCGGG
T ss_pred CCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHHhccCC
Confidence 468899999998 654 36799999999999999998 58996 777777 8999999999999875 467
Q ss_pred CCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCCCc
Q 016243 156 GDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLP 231 (392)
Q Consensus 156 gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~~p 231 (392)
.|.++|||.|||.. .+|++.|. .+.-++|...+.. .|....| ++|||||+........
T Consensus 126 ~D~~vv~ilSHG~~-------------g~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~g~ 187 (310)
T 2nn3_C 126 ADCLLVAVLTAGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTLAGKPK-LFFIQACQGDRLDGGI 187 (310)
T ss_dssp BSCEEEEEEEEEET-------------TEEECSSC----EECTHHHHGGGSTTTCGGGTTSCE-EEEEEEECCCCCCCCC
T ss_pred CCEEEEEEeCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhhcCCce-EEEEecccCCccccCc
Confidence 89999999999973 18999985 4666778776632 1332234 6999999965442211
Q ss_pred chhcccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHcC-CCCCHHHHHH
Q 016243 232 FLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HGATYGSMLN 310 (392)
Q Consensus 232 ~~~~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~-~~iT~~~L~~ 310 (392)
...+...++. + ....+-....+.++..|+.++..|++.. ..++.|+.+|++.|+.. +.....+||.
T Consensus 188 ~~~~~~~d~~-------~-~~~~~iP~~aD~LiayST~pG~vS~R~~-----~~GSwFIqaL~~~l~~~~~~~dl~~ilt 254 (310)
T 2nn3_C 188 TLSRTETDGS-------P-STSYRIPVHADFLIAFSTVPGYFSWRNT-----TRGSWFMQALCEELRYAGTERDILTLLT 254 (310)
T ss_dssp ---------------------CCCCCCSTTEEEEECCCCCEEESSSS-----EEEEHHHHHHHHHHHTTTTTSCHHHHHH
T ss_pred cccccccccc-------c-ccccccCCCCCEEEEEeCCCCceeecCC-----CCCCHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 0000000110 0 0001111234566667788999999875 35799999999999984 4589999999
Q ss_pred HHHHHHhcc
Q 016243 311 SMRSTIRNT 319 (392)
Q Consensus 311 ~vr~~v~~~ 319 (392)
.|+..|...
T Consensus 255 ~Vn~~V~~~ 263 (310)
T 2nn3_C 255 FVCQKVALD 263 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999753
No 10
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=99.69 E-value=2.6e-16 Score=150.30 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=132.2
Q ss_pred CCceEEEEEEeC-CCC-CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh-CCC
Q 016243 79 QGRKRALIVGVS-YRH-TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQP 155 (392)
Q Consensus 79 ~~~k~ALlIGI~-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-~~~ 155 (392)
.+++.||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+. .+.
T Consensus 18 ~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~~ 85 (259)
T 3sir_A 18 KNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLK-QLDFE---VTVYKD--------CRYKDILRTIEYSASQNHSD 85 (259)
T ss_dssp SEEEEEEEEEECCC-----------CCHHHHHHHHHH-HTTCE---EEEEEE--------CSHHHHHHHHHHHHTSCCTT
T ss_pred CCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence 467899999998 654 35688899999999999998 58996 777777 8999999999999865 578
Q ss_pred CCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCCCc
Q 016243 156 GDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLP 231 (392)
Q Consensus 156 gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~~p 231 (392)
.|.++|+|.|||.+ + +|++.|. .+.-++|.+.+.. .|....| ++|||||+.......-
T Consensus 86 ~d~~v~~~lsHG~~--g-----------~i~~~D~----~v~l~~i~~~f~~~~cpsL~gKPK-lf~iQACRG~~~~~g~ 147 (259)
T 3sir_A 86 SDCILVAILSHGEM--G-----------YIYAKDT----QYKLDNIWSFFTANHCPSLAGKPK-LFFIQACQGDRLDGGV 147 (259)
T ss_dssp EEEEEEEEEECTTC--C-----------CCCCTTH----HHHHHHTTGGGSTTTCGGGSSSCE-EEEEEEETTSCEEC--
T ss_pred CCEEEEEEecCCCC--C-----------eEEeCCC----cEEHHHHHHHhhhccCccccCCCC-EEEEecCCCCcccCCc
Confidence 89999999999987 1 6777773 3555666665531 1222244 6999999965432210
Q ss_pred chhcccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHcC-CCCCHHHHHH
Q 016243 232 FLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HGATYGSMLN 310 (392)
Q Consensus 232 ~~~~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~-~~iT~~~L~~ 310 (392)
.. .. . ....+. ......+-....+.++..|+.++..|++.+ ..++.|+.+|++.|+.. +.....+|+.
T Consensus 148 ~~---~~-~-~~~~dg-~~~~~~~ip~~aD~Li~yST~pG~vs~r~~-----~~GS~fiq~L~~~l~~~~~~~dl~~ilt 216 (259)
T 3sir_A 148 TM---QR-S-QTETDG-DSSMSYKIPVHADFLIAYSTVPGFYSWRNT-----TRGSWFMQSLCAELAANGKRLDILTLLT 216 (259)
T ss_dssp ---------------------CEECCCCTTEEEEEEEECCSCCCSSC-----CCSCHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred cc---cc-C-cccccC-cccccccCCCCCCEEEEEECCCCeEeecCC-----CCCcHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 00 00 0 000000 000011112234566666788999999875 36799999999999873 4588999999
Q ss_pred HHHHHHhcc
Q 016243 311 SMRSTIRNT 319 (392)
Q Consensus 311 ~vr~~v~~~ 319 (392)
.|+..|...
T Consensus 217 ~V~~~V~~~ 225 (259)
T 3sir_A 217 FVCQRVAVD 225 (259)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999999854
No 11
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=99.68 E-value=1.9e-15 Score=145.64 Aligned_cols=198 Identities=11% Similarity=0.078 Sum_probs=144.3
Q ss_pred CCCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh-C
Q 016243 78 AQGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-C 153 (392)
Q Consensus 78 ~~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-~ 153 (392)
..+++.||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+. .
T Consensus 41 ~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh 108 (277)
T 4ehd_A 41 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDH 108 (277)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence 3578999999998 653 35788999999999999998 58996 777777 8999999999999875 5
Q ss_pred CCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCC
Q 016243 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLD 229 (392)
Q Consensus 154 ~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~ 229 (392)
+..|.++++|.+||.+ + +|++.|. .+.-++|...+.. .|....| ++|||||+......
T Consensus 109 ~~~d~~vv~ilSHG~~--g-----------~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~ 170 (277)
T 4ehd_A 109 SKRSSFVCVLLSHGEE--G-----------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTELDC 170 (277)
T ss_dssp TTEEEEEEEEESCEET--T-----------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBC
T ss_pred cCCCEEEEEEEcCCCC--C-----------EEEEeCC----cEeHHHHHHHhhhccCchhcCCcc-EEEEecCCCCcccC
Confidence 6889999999999986 1 7999985 4777788877642 1222234 69999998543322
Q ss_pred CcchhcccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHH
Q 016243 230 LPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSM 308 (392)
Q Consensus 230 ~p~~~~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L 308 (392)
. . ...... -++. ...+-....+.++..|+.++..|++.+ ..++.|+.+|++.|+. .+.....+|
T Consensus 171 g-~----~~~~~~-~~~~----~~~~ip~~aD~Li~yST~pG~vs~r~~-----~~GS~fIq~L~~~l~~~~~~~dl~~i 235 (277)
T 4ehd_A 171 G-I----ETDSGV-DDDM----ACHKIPVEADFLYACSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHI 235 (277)
T ss_dssp C-C----CC---------------CCCCTTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHH
T ss_pred C-c----cccCCc-cccc----cccccCCCCCEEEEEECCCCeEeecCC-----CCCcHHHHHHHHHHHHHCCCCCHHHH
Confidence 1 1 000000 0000 011112234577777888999999875 3679999999999987 456889999
Q ss_pred HHHHHHHHhccC
Q 016243 309 LNSMRSTIRNTD 320 (392)
Q Consensus 309 ~~~vr~~v~~~~ 320 (392)
|..|+..|....
T Consensus 236 lt~V~~~V~~~~ 247 (277)
T 4ehd_A 236 LTRVNRKVATEF 247 (277)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 12
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=99.68 E-value=4.7e-15 Score=142.82 Aligned_cols=232 Identities=14% Similarity=0.074 Sum_probs=148.7
Q ss_pred CCCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhC-
Q 016243 78 AQGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC- 153 (392)
Q Consensus 78 ~~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~- 153 (392)
..++..||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+..
T Consensus 18 ~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~h 85 (277)
T 1nw9_B 18 MEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDH 85 (277)
T ss_dssp CSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred CCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEcC--------CCHHHHHHHHHHHHHhhc
Confidence 3578999999998 653 25789999999999999998 58996 777776 89999999999998764
Q ss_pred CCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCC
Q 016243 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLD 229 (392)
Q Consensus 154 ~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~ 229 (392)
+..|.++++|.+||.+... ... +..+.+.|.. .+.-++|...+.. .|....| ++|||||+......
T Consensus 86 ~~~D~~vv~ilSHG~~~~~---~~~---~g~iy~~D~~---~v~l~~i~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~ 155 (277)
T 1nw9_B 86 GALDCCVVVILSHGCQASH---LQF---PGAVYGTDGC---PVSVEKIVNIFNGTSCPSLGGKPK-LFFIQACGGEQKDH 155 (277)
T ss_dssp TTCSEEEEEEEEEEECCCC---SSS---CCEEECTTSC---EEEHHHHHHTTCTTTCGGGTTSCE-EEEEEEEC------
T ss_pred ccCCeEEEEEeCCCCcccc---ccC---CCcEEecCCc---eeeHHHHHHHhcccCChhHcCCCc-EEEEeccCCCcccC
Confidence 5689999999999987532 111 2367777742 4666778776631 1222234 69999998654321
Q ss_pred Ccchhcc---ccc-CccccccCCCC----------CCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHH
Q 016243 230 LPFLCRM---DRQ-GKYIWEDHRPR----------SGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQ 295 (392)
Q Consensus 230 ~p~~~~~---~r~-g~~~~e~~~p~----------~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~ 295 (392)
.-..... ++. +.....+..+. ....+-......++..|+.++..|+..+ ..++.|+.+|++
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~aD~Li~ysT~pG~vs~R~~-----~~GS~fiq~L~~ 230 (277)
T 1nw9_B 156 GFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDP-----KSGSWYVETLDD 230 (277)
T ss_dssp ---------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCT-----TSCBHHHHHHHH
T ss_pred CceeccCCcccccccccccccccccccccccccccccccccCCCCCEEEEEcCCCCeEEEcCC-----CCCcHHHHHHHH
Confidence 1000000 000 00000000000 0011112234567777789999999865 357899999999
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhccCCCCCcccCCcccccceeee
Q 016243 296 AIER-GHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTML 339 (392)
Q Consensus 296 aL~~-~~~iT~~~L~~~vr~~v~~~~~~~~~~~~~~~~~~~~~~~ 339 (392)
.|+. .+.....+||..|+..|....+.. +.|+..++|.+++
T Consensus 231 ~l~~~~~~~dl~~ilt~V~~~V~~~~~~k---Q~P~~~stL~k~l 272 (277)
T 1nw9_B 231 IFEQWAHSEDLQSLLLRVANAVSVKGIYK---QMPGCFNFLRKKL 272 (277)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHTTCCSC---CCCCCEECCSSBC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhhccCcc---CcccceeeeceeE
Confidence 9987 446889999999999998654221 2455555544443
No 13
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=99.66 E-value=8e-15 Score=141.34 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=144.0
Q ss_pred CCCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh-C
Q 016243 78 AQGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-C 153 (392)
Q Consensus 78 ~~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-~ 153 (392)
..+++.||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+. -
T Consensus 18 ~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h 85 (278)
T 3od5_A 18 HRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSH 85 (278)
T ss_dssp SSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred CCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence 3567899999998 653 46799999999999999998 58996 777776 8999999999998664 4
Q ss_pred CCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCC
Q 016243 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLD 229 (392)
Q Consensus 154 ~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~ 229 (392)
+..|.++++|.+||.+ | +|++.|.. +.-++|.+.+.. .|....| ++|||||+......
T Consensus 86 ~~~d~~vv~ilSHG~~-----g--------~i~g~D~~----v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~ 147 (278)
T 3od5_A 86 ADADCFVCVFLSHGEG-----N--------HIYAYDAK----IEIQTLTGLFKGDKCHSLVGKPK-IFIIQACRGNQHDV 147 (278)
T ss_dssp TTBSCEEEEEESCEET-----T--------EEECSSSE----EEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBC
T ss_pred cCCCEEEEEEECCCCC-----C--------EEEEeCCe----EEHHHHHHHhccccChhhcCCCc-EEEEecCCCCcccC
Confidence 6889999999999985 1 78888843 777888877742 1222244 69999999543322
Q ss_pred CcchhcccccCc-----cc-cccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHcC-CC
Q 016243 230 LPFLCRMDRQGK-----YI-WEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HG 302 (392)
Q Consensus 230 ~p~~~~~~r~g~-----~~-~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~-~~ 302 (392)
.... ...+. .. .+.........+-....+.++..|+.++..|+..+ ..++.|+.+|++.|+.. +.
T Consensus 148 -g~~~--~~~~~~~~~~l~~~~~~~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~-----~~GS~fIq~L~~~l~~~~~~ 219 (278)
T 3od5_A 148 -PVIP--LDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRET-----VNGSWYIQDLCEMLGKYGSS 219 (278)
T ss_dssp -EECC--C---------------------CCCEETTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTT
T ss_pred -Ceec--ccccccccccccccccccccccccccCCCCCeEEEEeCCCCeEEecCC-----CCCcHHHHHHHHHHHhhCCC
Confidence 1100 00000 00 00000000011112234677777889999999876 36799999999999873 45
Q ss_pred CCHHHHHHHHHHHHhccC
Q 016243 303 ATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 303 iT~~~L~~~vr~~v~~~~ 320 (392)
....+||..|+..|....
T Consensus 220 ~dl~~ilt~Vn~~V~~~~ 237 (278)
T 3od5_A 220 LEFTELLTLVNRKVSQRR 237 (278)
T ss_dssp SCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 889999999999998765
No 14
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=99.66 E-value=6.8e-15 Score=141.34 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=141.5
Q ss_pred CCCceEEEEEEeC-CCC---------CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHH
Q 016243 78 AQGRKRALIVGVS-YRH---------TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALY 147 (392)
Q Consensus 78 ~~~~k~ALlIGI~-Y~~---------~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~ 147 (392)
..++.+||||++. |.. ...+..|+.+|++.|+++|+ .+||. |.+..| .|.++|+++|+
T Consensus 14 ~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~ 81 (271)
T 3h11_B 14 SKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILK 81 (271)
T ss_dssp SSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHH
T ss_pred CCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHH
Confidence 3567999999998 543 15678899999999999998 58996 777776 89999999999
Q ss_pred HHHHh-CCCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCC
Q 016243 148 WLIQG-CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDAC 222 (392)
Q Consensus 148 ~L~~~-~~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C 222 (392)
++.+. -+..|.++++|.+||.+ | +|++.|.. .+.-++|...+.. .|....| ++|||||
T Consensus 82 ~~~~~~h~~~d~~v~~ilSHG~~-----g--------~i~g~D~~---~v~l~~I~~~f~~~~CpsL~gKPK-lffiQAC 144 (271)
T 3h11_B 82 IYQLMDHSNMDCFICCILSHGDK-----G--------IIYGTDGQ---EAPIYELTSQFTGLKCPSLAGKPK-VFFIQAC 144 (271)
T ss_dssp HHHHSCCTTCSCEEEEEESCEET-----T--------EEECTTSC---EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESC
T ss_pred HHHHhcCCCCCEEEEEEEcCCcC-----C--------EEEecCCC---eecHHHHHHHhhhccChhhcCCcc-EEEEecc
Confidence 99874 35789999999999985 1 78999853 4566778776631 1222234 6999999
Q ss_pred CCCCCCCCcchhcccccCccccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHcC-C
Q 016243 223 HSGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-H 301 (392)
Q Consensus 223 ~SG~~~~~p~~~~~~r~g~~~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~-~ 301 (392)
+.......-.. ..+.......+..........-....+.++..|+.++..|+..+ ..++.|+.+|++.|+.. +
T Consensus 145 RG~~~~~gv~~-~~~~~~~~~~e~d~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~-----~~GS~fIq~L~~~l~~~~~ 218 (271)
T 3h11_B 145 QGDNYQKGIPV-ETASEEQPYLEMALSSPQTRYIPDEADFLLGMATVNNCVSYRNP-----AEGTWYIQSLCQSLRERCP 218 (271)
T ss_dssp CSSBCC-----------------------CCCCSCSSSSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHGG
T ss_pred CCCcccCCcee-ccCCccccccccccccccccccCCCCceEEEEECCCCceeecCC-----CCCcHHHHHHHHHHHHhCC
Confidence 96544321100 00000000000000000000111234677777888999999876 35789999999999863 4
Q ss_pred -CCCHHHHHHHHHHHHhccC
Q 016243 302 -GATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 302 -~iT~~~L~~~vr~~v~~~~ 320 (392)
.....+||..|+..|....
T Consensus 219 ~~~dl~~ilt~Vn~~V~~~~ 238 (271)
T 3h11_B 219 RGDDILTILTEVNYEVSNKD 238 (271)
T ss_dssp GTCCHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 5789999999999998765
No 15
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=99.66 E-value=5.8e-15 Score=144.73 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=141.4
Q ss_pred CceEEEEEEeC-CCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhC-C-CC
Q 016243 80 GRKRALIVGVS-YRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC-Q-PG 156 (392)
Q Consensus 80 ~~k~ALlIGI~-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~-~-~g 156 (392)
+++.||||++. |.....++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+.. + ..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~h~~~~ 127 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQ-ELNFT---IFPYGN--------VNQDQFFKLLTMVTSSSYVQNT 127 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHH-HTTEE---EEEECS--------CCHHHHHHHHHHHHTSHHHHTC
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEccC--------CCHHHHHHHHHHHHHHhhcCCC
Confidence 78999999998 65322789999999999999998 58996 777766 89999999999998765 3 79
Q ss_pred CEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCCCCCcc
Q 016243 157 DSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLPF 232 (392)
Q Consensus 157 D~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~~~~p~ 232 (392)
|.++++|.+||.+..+ +.+|++.|.. .+.-++|...+.. .|....| ++|||||+....... +
T Consensus 128 D~~vv~ilSHG~~~~g---------~g~i~g~D~~---~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~g-~ 193 (316)
T 2fp3_A 128 ECFVMVLMTHGNSVEG---------KEKVEFRDGS---VVDMQKIKDHFQTAKCPYLVNKPK-VLMFPFARGDEYDLG-H 193 (316)
T ss_dssp SCEEEEEESCEECCTT---------CCEEECTTSC---EEEHHHHHHTTSTTTCGGGTTSCE-EEEESCC----------
T ss_pred CEEEEEEccCCCccCC---------CCEEEeecCc---EEeHHHHHHHhccccChhhcCCce-EEEEecCCCCcccCC-c
Confidence 9999999999988643 2389999853 3666788877632 1222234 699999996543211 1
Q ss_pred hhcccccCc----cc----------cccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHH
Q 016243 233 LCRMDRQGK----YI----------WEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIE 298 (392)
Q Consensus 233 ~~~~~r~g~----~~----------~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~ 298 (392)
. .+.... .. ..+. . ....+-....+.++..|+.++..|+... ..++.|+.+|++.|+
T Consensus 194 ~--~~~~~~~~~~~~~~~~~~~~~~~~d~-~-~~~~~iP~~aD~Li~yST~pG~vS~R~~-----~~GSwFIq~L~~~l~ 264 (316)
T 2fp3_A 194 P--KNQGNLMEPVYTAQEEKWPDTQTEGI-P-SPSTNVPSLADTLVCYANTPGYVTHRDL-----DTGSWYIQKFCQVMA 264 (316)
T ss_dssp ----------------------------------CCCCCCCCSEEEEECCCSCCCBTTTB-----CHHHHHHHHHHHHHH
T ss_pred e--eccCcccccccccccccccccccccc-c-ccccccCCCCCEEEEEeCCCCceeccCC-----CCCCHHHHHHHHHHH
Confidence 0 000000 00 0000 0 0011112234677777889999999865 356899999999998
Q ss_pred c-CCCCCHHHHHHHHHHHHhccC
Q 016243 299 R-GHGATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 299 ~-~~~iT~~~L~~~vr~~v~~~~ 320 (392)
. .+.....+||..|++.|....
T Consensus 265 ~~~~~~dl~~ilt~Vn~~V~~~~ 287 (316)
T 2fp3_A 265 DHAHDTDLEDILKKTSEAVGNKR 287 (316)
T ss_dssp HHTTTSCHHHHHHHHHHHHHSSS
T ss_pred HHCCCCCHHHHHHHHHHHHHHhh
Confidence 7 445889999999999998764
No 16
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=99.48 E-value=4.3e-13 Score=121.14 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=92.5
Q ss_pred CceEEEEEEeCCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh--CCCCC
Q 016243 80 GRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG--CQPGD 157 (392)
Q Consensus 80 ~~k~ALlIGI~Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~--~~~gD 157 (392)
++++|||||+..+....++.|+.+||+.|+++|+ .+||. |.+..| .|+++|+++|++|.++ .+..|
T Consensus 42 ~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~f~~~~d~~~~d 109 (178)
T 2h54_A 42 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD 109 (178)
T ss_dssp CCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred cCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhhhcCCCC
Confidence 4789999999944457899999999999999998 58996 777777 8999999999999863 46789
Q ss_pred EEEEEEecCccccCCCCCCCCCCcceeEEeccCC--CCCcccHHHHHHhhcCc----CCCCCeEEEEEeCCCCC
Q 016243 158 SLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFE--TQGMIVDDEINTTLVRP----LPRGARLHAIIDACHSG 225 (392)
Q Consensus 158 ~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~--~~g~i~d~eL~~~L~~~----l~~g~~l~vIlD~C~SG 225 (392)
.+++||.|||.+. .|...|.. ....+..++|...+... |....| ++|||||+.+
T Consensus 110 ~~v~~~lsHG~~g-------------~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gKPK-lffiqACRg~ 169 (178)
T 2h54_A 110 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPK-VIIIQACRGD 169 (178)
T ss_dssp CEEEEEESCBCSS-------------CEECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTSCE-EEEEESCSSS
T ss_pred EEEEEEecCCCCC-------------eEEeecCCcccCcEEEHHHHHHHHhhcCChhhcCCce-EEEEECCCCC
Confidence 9999999999862 46666652 11246667887777421 222234 6999999964
No 17
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=99.07 E-value=9.7e-10 Score=105.45 Aligned_cols=197 Identities=11% Similarity=0.066 Sum_probs=127.2
Q ss_pred CCceEEEEEEeCCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHH--hCCCC
Q 016243 79 QGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ--GCQPG 156 (392)
Q Consensus 79 ~~~k~ALlIGI~Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~--~~~~g 156 (392)
.++-.||||-+. .+|++.|+++|+ .+||. |.+..| .|.++|...|+++.+ ..+..
T Consensus 41 ~~rG~~LIinn~-----------~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh~~~ 97 (272)
T 3h11_A 41 KPLGICLIIDCI-----------GNETELLRDTFT-SLGYE---VQKFLH--------LSMHGISQILGQFACMPEHRDY 97 (272)
T ss_dssp SSSEEEEEEESS-----------CCCCSHHHHHHH-HHTEE---EEEEES--------CBHHHHHHHHHHHHTCGGGGGC
T ss_pred CcceEEEEECCc-----------hHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhccccCCC
Confidence 456677777642 169999999998 58996 667766 899999999999986 47789
Q ss_pred CEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCCCC-CCCc
Q 016243 157 DSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTV-LDLP 231 (392)
Q Consensus 157 D~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG~~-~~~p 231 (392)
|.++++|.+||.. | +|++.|.... .+.-++|.+.+.. .|. |.--++||+||+.... .+..
T Consensus 98 d~~v~~ilSHG~~-----g--------~i~g~D~~~~-~v~l~~i~~~f~~~~CpsL~-gKPKlffiQACRG~~~~~~~g 162 (272)
T 3h11_A 98 DSFVCVLVSRGGS-----Q--------SVYGVDQTHS-GLPLHHIRRMFMGDSCPYLA-GKPKMFFIQNYVVSEGQLENS 162 (272)
T ss_dssp SEEEEEEEEEEET-----T--------EECBTSCCSS-CEEHHHHHHHHSTTTCGGGT-TSCEEEEEEEEEC--------
T ss_pred CEEEEEEEcCCCC-----C--------eEEEEcCCcc-eEeHHHHHHHhccccChhhc-CCCcEEEEECCCCCCcccCCC
Confidence 9999999999984 1 7888885321 3666788887742 122 3323699999985321 1110
Q ss_pred chhcccccCcc--ccccCCCCCCcccccCCCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHcCCCCCHHHHH
Q 016243 232 FLCRMDRQGKY--IWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSML 309 (392)
Q Consensus 232 ~~~~~~r~g~~--~~e~~~p~~~~~k~~~~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~~~iT~~~L~ 309 (392)
.. +..++.. ..+......+..+-......++..|+.++..|+..+ ..++.|..+|.+.|+........+|+
T Consensus 163 ~~--~~~D~~~~~~~~~~~~~~~~~~iP~~aDfL~~yST~pg~~s~R~~-----~~GSwfIq~Lc~~l~~~~~~dl~~il 235 (272)
T 3h11_A 163 SL--LEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSH-----SSPSLYLQCLSQKLRQERKRPLLDLH 235 (272)
T ss_dssp --------------------------CCTTCSEEEEEEEEEGGGTSSTT-----CCCCHHHHHHHHHHHHCTTSCHHHHH
T ss_pred cc--eeccCcccccccccccccccccCCCCCCEEEEEeccCCeEEEEeC-----CCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 00 0111110 000000000111112234566666777888887665 35799999999999985457899999
Q ss_pred HHHHHHHhccC
Q 016243 310 NSMRSTIRNTD 320 (392)
Q Consensus 310 ~~vr~~v~~~~ 320 (392)
..|+..|.+..
T Consensus 236 t~Vn~~V~~~~ 246 (272)
T 3h11_A 236 IELNGYMYDWN 246 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999997654
No 18
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=98.90 E-value=2.6e-08 Score=88.84 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=91.9
Q ss_pred CCCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHH--h
Q 016243 78 AQGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ--G 152 (392)
Q Consensus 78 ~~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~--~ 152 (392)
..++.+||||.+. |.. ...+..|+..|++.|+++|+ .+||. |.+..| .|.++|+..|+++.+ .
T Consensus 30 ~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~d 97 (167)
T 1pyo_A 30 SRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFK-LLGYD---VHVLCD--------QTAQEMQEKLQNFAQLPA 97 (167)
T ss_dssp CSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHTCGG
T ss_pred CCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhhh
Confidence 3568999999887 543 24678899999999999998 58996 667666 899999999999987 3
Q ss_pred CCCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCC
Q 016243 153 CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSG 225 (392)
Q Consensus 153 ~~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG 225 (392)
-+..|.++++|.+||.. | +|.+.|.. .+.-++|...+.. .|....| ++||+||+..
T Consensus 98 h~~~dc~vv~ilSHG~~-----g--------~i~g~D~~---~v~l~~i~~~F~~~~CpsL~gKPK-lffiQACRG~ 157 (167)
T 1pyo_A 98 HRVTDSCIVALLSHGVE-----G--------AIYGVDGK---LLQLQEVFQLFDNANCPSLQNKPK-MFFIQACRGD 157 (167)
T ss_dssp GGTSSEEEEEEESCEET-----T--------EEECTTSC---EEEHHHHHHHTSTTTCGGGTTSCE-EEEEESCSSS
T ss_pred ccCCCEEEEEeCCCCCC-----C--------eEEEeCCC---EEcHHHHHHHhcccCChhHcCCCe-EEEEECCCCC
Confidence 56789999999999976 1 78888842 4666788877742 1322234 6999999853
No 19
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=98.80 E-value=6.9e-08 Score=84.27 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=89.3
Q ss_pred CCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhC-C
Q 016243 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC-Q 154 (392)
Q Consensus 79 ~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~-~ 154 (392)
.++.+||||.+. |.. ...+..|+..|++.|+++|+ .+||. |.+..| .|.++|++.|+++.+.- +
T Consensus 14 ~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 81 (146)
T 2dko_A 14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 81 (146)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHHhhcC
Confidence 467789999877 442 24677899999999999998 58996 667766 89999999999998754 5
Q ss_pred CCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCC
Q 016243 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSG 225 (392)
Q Consensus 155 ~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG 225 (392)
..|.+++++.+||.. | .|...|. .+.-++|...+.. .|....| ++||+||+..
T Consensus 82 ~~dc~vv~ilSHG~~-----g--------~i~g~D~----~~~l~~i~~~F~~~~CpsL~gKPK-lffiQACRG~ 138 (146)
T 2dko_A 82 KRSSFVCVLLSHGEE-----G--------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGT 138 (146)
T ss_dssp TEEEEEEEEESCEET-----T--------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSS
T ss_pred CCCeEEEEeccCCCC-----C--------EEEEeCC----cEeHHHHHHHhccccChhhcCCCe-EEEEECCCCC
Confidence 779999999999974 1 7888884 4666778776631 1222234 6999999853
No 20
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=98.72 E-value=2e-07 Score=82.80 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=89.9
Q ss_pred CCceEEEEEEeC-CCC---------CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHH
Q 016243 79 QGRKRALIVGVS-YRH---------TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYW 148 (392)
Q Consensus 79 ~~~k~ALlIGI~-Y~~---------~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~ 148 (392)
.++.+||||.+. |.. ...+..|+..|++.|+++|. .+||. |.+..| .|.++|+..|++
T Consensus 21 ~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~ 88 (164)
T 1qtn_A 21 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI 88 (164)
T ss_dssp SSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred CCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHH
Confidence 457899999886 432 24688999999999999998 58996 666666 899999999999
Q ss_pred HHHh-CCCCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCC
Q 016243 149 LIQG-CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACH 223 (392)
Q Consensus 149 L~~~-~~~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~ 223 (392)
+.+. -+..|.+++++.+||.. | .+...|.. .+.-++|...+.. .|....| ++||.||+
T Consensus 89 ~~~~dh~~~dc~vv~ilSHG~~-----g--------~i~g~D~~---~v~i~~i~~~F~~~~CpsL~gKPK-lFfiQACR 151 (164)
T 1qtn_A 89 YQLMDHSNMDCFICCILSHGDK-----G--------IIYGTDGQ---EAPIYELTSQFTGLKCPSLAGKPK-VFFIQACQ 151 (164)
T ss_dssp HHHSCCTTCSCEEEEEESCEET-----T--------EEECTTSC---EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESCS
T ss_pred HHHhhccCCCEEEEEeCCCCCC-----C--------EEEeeCCC---EeeHHHHHHHhccccChhhcCCCe-EEEEECCC
Confidence 9765 36899999999999975 1 68888742 3556778776632 1322234 69999998
Q ss_pred CC
Q 016243 224 SG 225 (392)
Q Consensus 224 SG 225 (392)
..
T Consensus 152 G~ 153 (164)
T 1qtn_A 152 GD 153 (164)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 21
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=98.51 E-value=1.2e-06 Score=78.38 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=87.0
Q ss_pred CCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh-CC
Q 016243 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQ 154 (392)
Q Consensus 79 ~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-~~ 154 (392)
.++..||||.+. |.. ...+..|+..|++.|+++|. .+||. |.+..| .|.++|+..|+++.+. -+
T Consensus 42 ~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LgF~---V~v~~d--------lt~~em~~~l~~~s~~dh~ 109 (173)
T 2ql9_A 42 EKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHT 109 (173)
T ss_dssp SEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence 356678888776 432 23566899999999999998 58996 666666 8999999999998765 35
Q ss_pred CCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCC
Q 016243 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSG 225 (392)
Q Consensus 155 ~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG 225 (392)
..|.+++++.+||.. | .|...|. .+.-++|...+.. .|....| ++||.||+..
T Consensus 110 ~~dc~vvvilSHG~~----------g---~I~g~D~----~~~i~~I~~~F~~~~CpsL~gKPK-lFfIQACRG~ 166 (173)
T 2ql9_A 110 NAACFACILLSHGEE----------N---VIYGKDG----VTPIKDLTAHFRGDRCKTLLEKPK-LFFIQACRGT 166 (173)
T ss_dssp TEEEEEEEEESCEET----------T---EEEETTE----EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESCCSS
T ss_pred CCCeEEEeecCCCCC----------C---EEEEcCC----cEEHHHHHHHcCcccChhHcCCCe-EEEEECCCCC
Confidence 779999999999975 1 6878874 3666778776631 1222234 6999999853
No 22
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=98.48 E-value=1.9e-06 Score=77.48 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=87.1
Q ss_pred CCceEEEEEEeC-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh-CC
Q 016243 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQ 154 (392)
Q Consensus 79 ~~~k~ALlIGI~-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-~~ 154 (392)
.++.+||||.+. +.. ...+..|+..|++.|+++|+ .+||. |.+..| .|.++|...|+++.+. -+
T Consensus 42 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 109 (179)
T 3p45_A 42 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA 109 (179)
T ss_dssp SBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHhhhhcC
Confidence 456789999887 442 45788999999999999998 58996 667766 8999999999998653 34
Q ss_pred CCCEEEEEEecCccccCCCCCCCCCCcceeEEeccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEeCCCCC
Q 016243 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSG 225 (392)
Q Consensus 155 ~gD~llfYFSGHG~~~~d~~gde~dG~de~Lvp~D~~~~g~i~d~eL~~~L~~----~l~~g~~l~vIlD~C~SG 225 (392)
..|.+++.+..||.. | .|...|. .+.-++|...+.. .|....| ++||.||+..
T Consensus 110 ~~dc~vvvilSHG~~-----g--------~I~g~D~----~v~l~~I~~~F~~~~CpsL~gKPK-lFfIQACRG~ 166 (179)
T 3p45_A 110 DADCFVCVFLSHGEG-----N--------HIYAYDA----KIEIQTLTGLFKGDKCHSLVGKPK-IFIIQACRGN 166 (179)
T ss_dssp TBSCEEEEEESCEET-----T--------EEECSSS----EEEHHHHHGGGSGGGCGGGTTSCE-EEEEECC---
T ss_pred CCCEEEEEEeccCCC-----C--------EEEEECC----EEEHHHHHHhcccccChhhCCCCc-EEEEECCCCC
Confidence 779999999999974 1 6777773 3666788877632 2322234 6999999853
No 23
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=90.81 E-value=0.079 Score=40.20 Aligned_cols=34 Identities=26% Similarity=0.715 Sum_probs=31.6
Q ss_pred CCCcccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 1 MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 1 ~~~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
||..++|+ |++.+-+..++.+.+|. |.++-++..
T Consensus 1 mY~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 1 MYIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp CEEEEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred CeEEEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 88999999 99999999999999998 999998885
No 24
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=83.49 E-value=3.9 Score=31.81 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcc
Q 016243 260 GEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNT 319 (392)
Q Consensus 260 g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L~~~vr~~v~~~ 319 (392)
.+.++.-|+.++-.|+-.+ ..++.|-.+|.+.|++ .+.....+|+..|...+.+.
T Consensus 9 aDfL~~yST~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~il~~V~~~v~~~ 64 (88)
T 1sc3_B 9 KDFIAFCSSTPDNVSWRHP-----TMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQP 64 (88)
T ss_dssp CSEEEEESSCTTBCCCEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTCSC
T ss_pred CCEEEEEeCCCCCEeeEcC-----CCCCHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHhcc
Confidence 4667777888998888765 3568999999999986 34578999999999988763
No 25
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=81.10 E-value=6.3 Score=31.58 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccC
Q 016243 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 259 ~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L~~~vr~~v~~~~ 320 (392)
....++.-|+.++-.|+-.. ...+.|-.+|.+.|++ .......+|+..|.+.|....
T Consensus 14 ~aDfL~~yST~pG~~S~R~~-----~~GSwFIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~ 71 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNT-----KRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDRE 71 (105)
T ss_dssp SCSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCCcEEEecC-----CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh
Confidence 34677777788888887554 3568999999999987 445789999999999998764
No 26
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=80.81 E-value=4.8 Score=31.71 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=45.3
Q ss_pred CCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccC
Q 016243 260 GEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 260 g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L~~~vr~~v~~~~ 320 (392)
.+.++.-|+.++-.|+-.+ ..++.|-.+|.+.|++ .+.....+|+..|.+.|....
T Consensus 11 aDfL~~yST~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~ 67 (97)
T 2ql9_B 11 ADFLFAYSTVPGYYSWRSP-----GRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHF 67 (97)
T ss_dssp TTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCcEeeecC-----CCCCeeHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh
Confidence 4567777788998888654 3578999999999986 445789999999999998764
No 27
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=79.07 E-value=4.3 Score=31.98 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=44.6
Q ss_pred CCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhccC
Q 016243 260 GEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGA-TYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 260 g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~i-T~~~L~~~vr~~v~~~~ 320 (392)
...++.-|+.++-.|+-.+ ..++.|-.+|.+.|++ .+.. ...+|+..|.+.|....
T Consensus 13 aDfL~~ysT~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~~dl~~ilt~Vn~~V~~~~ 70 (95)
T 1qtn_B 13 ADFLLGMATVNNCVSYRNP-----AEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKD 70 (95)
T ss_dssp CSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCCCcEEEecC-----CCCcHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHhh
Confidence 4667777788888887554 3568999999999987 3345 79999999999998765
No 28
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=78.98 E-value=5.8 Score=31.67 Aligned_cols=57 Identities=7% Similarity=0.024 Sum_probs=46.1
Q ss_pred CCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccC
Q 016243 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 259 ~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L~~~vr~~v~~~~ 320 (392)
....++.-|+.++-.|+-.+ ..++.|-.+|.+.|++ .+.....+|+..|.+.|....
T Consensus 16 ~aDfL~~yST~pG~vS~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~ilT~Vn~~V~~~~ 73 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEF 73 (103)
T ss_dssp TTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCCCcEeEEcC-----CCCCeeHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHh
Confidence 34677777888998888665 3568999999999986 445789999999999998764
No 29
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=78.96 E-value=5.6 Score=32.73 Aligned_cols=56 Identities=7% Similarity=0.029 Sum_probs=45.5
Q ss_pred CCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccC
Q 016243 260 GEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 260 g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~-~~~iT~~~L~~~vr~~v~~~~ 320 (392)
..+++.-|+.++-.|+-.+ ...+.|-.+|.+.|++ .+.....+|+..|.+.|....
T Consensus 16 aDfLi~yST~pG~vS~R~~-----~~GSwFIQ~Lc~vl~~~~~~~dl~~ilT~Vn~~Va~~~ 72 (118)
T 2xzd_B 16 ADFLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEF 72 (118)
T ss_dssp TTEEEEESSCTTBCCCEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCCEeeEeC-----CCCCccHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHh
Confidence 4667777888998888665 3568999999999986 445789999999999998763
No 30
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=68.79 E-value=26 Score=28.60 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=46.0
Q ss_pred CCCEEEEEecCCCCcccccccCCCCCCCChhHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccC
Q 016243 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HGATYGSMLNSMRSTIRNTD 320 (392)
Q Consensus 259 ~g~~i~~SAc~~~q~A~e~~~~g~~~~~G~FT~~Ll~aL~~~-~~iT~~~L~~~vr~~v~~~~ 320 (392)
..++++.-|+.++-.|+-.+ ...+.|-.+|.+.|++. ......+|+..|.+.|.+..
T Consensus 15 eADfL~~yST~pGyvS~R~~-----~~GSwFIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va~~~ 72 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNT-----KRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDRE 72 (117)
T ss_dssp SCSEEEEESSCTTCCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCC
T ss_pred ccCEEEEEcCCCCeECeeec-----CCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 34677777888999888665 35689999999999863 34689999999999999654
No 31
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=68.20 E-value=2.6 Score=31.24 Aligned_cols=30 Identities=20% Similarity=0.612 Sum_probs=25.0
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCcee
Q 016243 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (392)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~vrC~~C~~vt 32 (392)
|-|.|++|.. ...+..-.+.|.|..|..+-
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEE
Confidence 5789999998 46788888899999998553
No 32
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=64.87 E-value=3.6 Score=29.76 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=28.1
Q ss_pred CCcccCCC--CCCcc----ccCCCCceeeccccCceecccC
Q 016243 2 LMLVDCSK--CRTTL----QLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 2 ~~~~~C~~--C~~~l----~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
+..++|.+ |++.| .+-.+.+..+|.+|...+.+..
T Consensus 7 ~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred CCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 45789998 99975 4445678899999999888875
No 33
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.92 E-value=3.4 Score=30.34 Aligned_cols=29 Identities=31% Similarity=0.731 Sum_probs=23.3
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCce
Q 016243 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAI 31 (392)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~vrC~~C~~v 31 (392)
|.|.|++|.. ...+..-.+.|.|..|..+
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 5678999988 4677888888999999754
No 34
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=60.42 E-value=4.2 Score=31.35 Aligned_cols=29 Identities=31% Similarity=0.750 Sum_probs=23.6
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCce
Q 016243 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAI 31 (392)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~vrC~~C~~v 31 (392)
|-|.|++|.. ...+..-.+.|.|..|..+
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCE
Confidence 5678999988 4677888888999999865
No 35
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=58.14 E-value=15 Score=35.02 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHhccC--CCCCceEEc-cCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEE
Q 016243 100 GCINDARCMKYMLTNRFK--FPESSIVML-TEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFH 162 (392)
Q Consensus 100 g~~nDa~~m~~~L~~~~G--f~~~~I~~L-td~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfY 162 (392)
|...=-+.+++++..++| +++++|.++ +.. ..+.+..++.-+..-.++||.+++-
T Consensus 72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G--------~~~al~~~~~~l~~~~~~gd~Vlv~ 129 (401)
T 7aat_A 72 GLADFTRASAELALGENSEAFKSGRYVTVQGIS--------GTGSLRVGANFLQRFFKFSRDVYLP 129 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH--------HHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCHHHHHHHHHHhcCCCccccccCceEEEecCc--------chHHHHHHHHHHHHhccCCCEEEEc
Confidence 434444557777765556 346677653 542 3445555555555556799999984
No 36
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.01 E-value=11 Score=28.97 Aligned_cols=32 Identities=13% Similarity=0.385 Sum_probs=26.1
Q ss_pred cccCCCCCCccccCCCCceeeccccCceeccc
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAITHIA 35 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~ 35 (392)
.+.|++|...+...++...++|..|+...=+.
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVR 56 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSS
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccc
Confidence 34699999988888888889999999877554
No 37
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=49.73 E-value=7.7 Score=26.76 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=21.1
Q ss_pred cccCCCCCCccccCC--CCceeeccccCc--eecccC
Q 016243 4 LVDCSKCRTTLQLPP--GAQSIRCAICQA--ITHIAD 36 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~--~a~~vrC~~C~~--vt~v~~ 36 (392)
.-.|.+|++.+...- --+.|||.+|.. +++|+.
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEEecC
Confidence 346999998754432 236799999975 445553
No 38
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=49.64 E-value=11 Score=27.27 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=21.5
Q ss_pred CcccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 3 MLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 3 ~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
....|+.|+++=. .-.|..|...|.+.-
T Consensus 5 ~mr~C~~CgvYTL------k~~CP~CG~~T~~~h 32 (60)
T 2apo_B 5 RMKKCPKCGLYTL------KEICPKCGEKTVIPK 32 (60)
T ss_dssp CCEECTTTCCEES------SSBCSSSCSBCBCCC
T ss_pred hceeCCCCCCEec------cccCcCCCCcCCCCC
Confidence 3567999998633 556999999888874
No 39
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=49.61 E-value=8.8 Score=26.25 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=24.9
Q ss_pred cccCCCCCC-ccccCCCCceeeccccCcee
Q 016243 4 LVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (392)
Q Consensus 4 ~~~C~~C~~-~l~~p~~a~~vrC~~C~~vt 32 (392)
.+.|+.|+. .|.+-+......|..|..|-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 567999998 89998888899999998654
No 40
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=49.58 E-value=10 Score=28.16 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=30.7
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
...+.|+.|+..|.+-.......|..|+..-.|+.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 46789999999999988888899999998888875
No 41
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=49.29 E-value=6.1 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.592 Sum_probs=19.6
Q ss_pred CcccCCCCCCc-cccCCCCceeeccccCce
Q 016243 3 MLVDCSKCRTT-LQLPPGAQSIRCAICQAI 31 (392)
Q Consensus 3 ~~~~C~~C~~~-l~~p~~a~~vrC~~C~~v 31 (392)
|-|.|.+|... ..+..-.+.|.|..|..+
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 45677777773 566666677777777643
No 42
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=49.04 E-value=11 Score=28.17 Aligned_cols=35 Identities=17% Similarity=0.421 Sum_probs=30.8
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
...+.|+.|+..|.+-.......|..|+..-.|+.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCCCBCTTTCCBEEEETTTTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCEEeCCCCEEEcCCCCceecCCC
Confidence 46789999999999988888899999998888875
No 43
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=48.82 E-value=38 Score=33.87 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCceEEEEEEeCCCC-CCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCC
Q 016243 79 QGRKRALIVGVSYRH-TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGD 157 (392)
Q Consensus 79 ~~~k~ALlIGI~Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD 157 (392)
.=++++++|+=+-.. ...+-.-...+.+.+++.+.+ .++- +|..+.+.+ +++++|.++|+ + .
T Consensus 140 ~Wr~~~l~ia~~~~~~~~d~G~~~~~~~~~~~~~~~~-~~~~--~v~k~ydp~------~~~~~I~~~ln---~-----G 202 (435)
T 1cvr_A 140 KWLGQALCIASAEGGPSADNGESDIQHENVIANLLTQ-YGYT--KIIKCYDPG------VTPKNIIDAFN---G-----G 202 (435)
T ss_dssp TTTTEEEEEECSCBCTTSGGGCBHHHHHHHHHHHHHH-HTCS--EEEEEESSS------CCHHHHHHHHH---H-----C
T ss_pred chhceEEEEecCCCCcccccchhhhhHHHHHHhhhhc-CCcc--eeEEecCCc------cCHHHHHHHHh---C-----C
Confidence 347889988843111 001001224556667777653 4442 455555543 66777777654 2 2
Q ss_pred EEEEEEecCcccc
Q 016243 158 SLLFHFSGHGSQQ 170 (392)
Q Consensus 158 ~llfYFSGHG~~~ 170 (392)
.+++.|.|||...
T Consensus 203 ~~ivnY~GHG~~~ 215 (435)
T 1cvr_A 203 ISLVNYTGHGSET 215 (435)
T ss_dssp CSEEEEESCBCSS
T ss_pred CeEEEEecCCCcc
Confidence 4688888999763
No 44
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=48.79 E-value=10 Score=28.28 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
...+.|+.|+..|.+-.......|..|+..-.|+.
T Consensus 6 LeiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 6 LDILACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp GGTCCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred HhheeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 45678999999999988888899999998888874
No 45
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=48.72 E-value=50 Score=25.18 Aligned_cols=52 Identities=15% Similarity=-0.088 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCC-CCEEEEEEec
Q 016243 105 ARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQP-GDSLLFHFSG 165 (392)
Q Consensus 105 a~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~-gD~llfYFSG 165 (392)
...+++.|++ +|...++-....+ -|.+++..-...|.+-..+ .|+|.||.-+
T Consensus 14 ~~kv~k~l~~-yg~rvQ~SVFeg~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~ 66 (85)
T 2i0x_A 14 VNKVKKFLRM-HLNWVQNSVFEGE--------VTLAEFERIKEGLKKIIDENSDSVIIYKLR 66 (85)
T ss_dssp HHHHHHHHTT-TSEEEETTEEEEE--------CCHHHHHHHHHHHHHSSCTTTCEEEEEEES
T ss_pred HHHHHHHHHH-hCcccceeEEEEE--------CCHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 4567888874 5755443333332 4566665544555555555 6999999999
No 46
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.50 E-value=8.1 Score=26.88 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=20.9
Q ss_pred ccCCCCCCccccCCCCceeeccccCce
Q 016243 5 VDCSKCRTTLQLPPGAQSIRCAICQAI 31 (392)
Q Consensus 5 ~~C~~C~~~l~~p~~a~~vrC~~C~~v 31 (392)
-.|+.|+..+.+.+......|..|+.+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCE
Confidence 359999987655555678999999865
No 47
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.80 E-value=7.2 Score=30.36 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=20.0
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCce
Q 016243 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAI 31 (392)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~vrC~~C~~v 31 (392)
|.|.|++|.. ...+..-.+.|.|..|..+
T Consensus 35 m~VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred eEEECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 4577888877 3566677777888888643
No 48
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=47.40 E-value=7.5 Score=41.95 Aligned_cols=35 Identities=20% Similarity=0.643 Sum_probs=28.3
Q ss_pred CcccCCCCCCcc----ccCCCCceeeccccCceecccCC
Q 016243 3 MLVDCSKCRTTL----QLPPGAQSIRCAICQAITHIADP 37 (392)
Q Consensus 3 ~~~~C~~C~~~l----~~p~~a~~vrC~~C~~vt~v~~~ 37 (392)
..++|.+||+++ .+-.+.+..+|..|...+.+...
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGG
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchH
Confidence 357999999975 44456789999999999998753
No 49
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=46.35 E-value=9.5 Score=28.31 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
...+.|+.|+..|.+-.......|..|+..-.|+.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 45678999999999988888899999998888874
No 50
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=46.14 E-value=8.1 Score=41.65 Aligned_cols=35 Identities=20% Similarity=0.682 Sum_probs=28.1
Q ss_pred CcccCCCCCCcc----ccCCCCceeeccccCceecccCC
Q 016243 3 MLVDCSKCRTTL----QLPPGAQSIRCAICQAITHIADP 37 (392)
Q Consensus 3 ~~~~C~~C~~~l----~~p~~a~~vrC~~C~~vt~v~~~ 37 (392)
..++|.+||+++ .+-.+.+..+|..|...+.+...
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 358999999975 33456789999999999988864
No 51
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.71 E-value=11 Score=27.73 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=21.4
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~vt 32 (392)
.-.|+.|++...+..+ ..|||..|..-.
T Consensus 21 ~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred EEECCCCCCeeecCCC-CceECCCCCcEE
Confidence 4469999998887754 569999997543
No 52
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=43.83 E-value=12 Score=40.39 Aligned_cols=32 Identities=22% Similarity=0.732 Sum_probs=26.1
Q ss_pred cccCCCCCCcc----ccCCCCceeeccccCceecccC
Q 016243 4 LVDCSKCRTTL----QLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 4 ~~~C~~C~~~l----~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
.++|.+||+++ ++..| +..+|..|...+.+..
T Consensus 85 p~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 85 IVRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPE 120 (751)
T ss_dssp CCBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCG
T ss_pred CCcccCccCEeCCceEEecC-CEEEcccccCCCCCCH
Confidence 58999999964 44344 8999999999998875
No 53
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=43.13 E-value=44 Score=31.04 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHH
Q 016243 101 CINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ 151 (392)
Q Consensus 101 ~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~ 151 (392)
....|+.|+++|.+.+|++.+.|.+-.... =|.+|++...+.|.+
T Consensus 95 ~~sEA~~m~~~l~~~~GVp~~~IllE~~S~------nT~ENa~~s~~ll~~ 139 (266)
T 3ca8_A 95 GRAEATILADIAHQFWHIPHEKIWIEDQST------NCGENARFSIALLNQ 139 (266)
T ss_dssp TSCHHHHHHHHHHHTTCCCGGGEEEECCCC------SHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCHHHEEeCCCCc------cHHHHHHHHHHHHHh
Confidence 356889999999976699998886544333 589999988776643
No 54
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=42.74 E-value=14 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=27.5
Q ss_pred CCCcccCCCCCCccccC----CCCceeeccccCceeccc
Q 016243 1 MLMLVDCSKCRTTLQLP----PGAQSIRCAICQAITHIA 35 (392)
Q Consensus 1 ~~~~~~C~~C~~~l~~p----~~a~~vrC~~C~~vt~v~ 35 (392)
|++..-|+.|+..|.++ .+...+.|..|.+...+.
T Consensus 1 ~~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 1 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCCCCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 67788899999977666 335679999999877655
No 55
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=41.42 E-value=12 Score=40.51 Aligned_cols=33 Identities=21% Similarity=0.663 Sum_probs=27.9
Q ss_pred cccCCCCCCcc----ccCCCCceeeccccCceecccC
Q 016243 4 LVDCSKCRTTL----QLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 4 ~~~C~~C~~~l----~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
.++|.+|++++ .+-.+.+..+|..|...+.+..
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 58999999975 5567788999999999998864
No 56
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=40.66 E-value=12 Score=41.13 Aligned_cols=33 Identities=21% Similarity=0.663 Sum_probs=27.9
Q ss_pred cccCCCCCCcc----ccCCCCceeeccccCceecccC
Q 016243 4 LVDCSKCRTTL----QLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 4 ~~~C~~C~~~l----~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
.++|.+|++++ .+-.+.+..+|..|...+.+..
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 58999999975 5556788999999999998864
No 57
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=36.76 E-value=19 Score=26.57 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
...+.|+.|+..|.+-.......|..|+..=.|+.
T Consensus 8 LeiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp TCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred HHHhCCCCCCCcCeEeCCCCEEEcCCCCccccCCC
Confidence 35678999999999988888899999998887774
No 58
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.94 E-value=10 Score=29.25 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.7
Q ss_pred cccCCCCCCccccCCCCceeeccccCce
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAI 31 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~v 31 (392)
.-.|+.|+..++.-+++...+|..|..+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 4469999999999999999999999854
No 59
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=34.66 E-value=11 Score=33.81 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=23.0
Q ss_pred CCCcccCCCCCCccccCCCCc--eeeccccC
Q 016243 1 MLMLVDCSKCRTTLQLPPGAQ--SIRCAICQ 29 (392)
Q Consensus 1 ~~~~~~C~~C~~~l~~p~~a~--~vrC~~C~ 29 (392)
|..+..|..|+.......... ++.|..|+
T Consensus 131 ~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp SEEEEECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred ceeeCcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 456678999999887777664 89999998
No 60
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=33.88 E-value=27 Score=24.86 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCcccCCCCCC-ccccCCCCceeeccccCcee
Q 016243 2 LMLVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (392)
Q Consensus 2 ~~~~~C~~C~~-~l~~p~~a~~vrC~~C~~vt 32 (392)
...+.|+.|+. .|.+-....-+.|..|..|-
T Consensus 9 l~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred cccccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 34568999987 67777777789999998775
No 61
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=32.64 E-value=61 Score=24.88 Aligned_cols=55 Identities=7% Similarity=-0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCC-CCEEEEEEecC
Q 016243 103 NDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQP-GDSLLFHFSGH 166 (392)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~-gD~llfYFSGH 166 (392)
.....+++.|+ .+|...++-....+ -|..++..-...|.+-..+ .|+|+||.-+-
T Consensus 16 kr~~kv~k~l~-~yg~rvQ~SVFe~~--------lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~ 71 (90)
T 1zpw_X 16 TRRVKLANLLK-SYGERVQLSVFECY--------LDERLLEDLRRRARRLLDLGQDALRIYPVAG 71 (90)
T ss_dssp HHHHHHHHHHH-TTEEEEETTEEEEE--------ECHHHHHHHHHHHHHHCCTTTCEEEEEECCS
T ss_pred HHHHHHHHHHH-HhCccceEeEEEEE--------cCHHHHHHHHHHHHHhhCCCCCEEEEEEeCC
Confidence 56778888887 46754433222222 3344444333334444445 79999999887
No 62
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=31.59 E-value=27 Score=29.46 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=14.7
Q ss_pred HHHhCCCCCEEEEEEecC
Q 016243 149 LIQGCQPGDSLLFHFSGH 166 (392)
Q Consensus 149 L~~~~~~gD~llfYFSGH 166 (392)
++.+.++||.+|||-|+=
T Consensus 31 ~lr~mk~GD~~~fYhs~~ 48 (145)
T 2hd9_A 31 TLSRVKPGDKLVIYVRQE 48 (145)
T ss_dssp HHTTCCTTCEEEEEECCE
T ss_pred HHHhCCCCCEEEEEEccc
Confidence 445788999999999963
No 63
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=28.67 E-value=72 Score=25.21 Aligned_cols=58 Identities=14% Similarity=-0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCC-CCCEEEEEEecCccc
Q 016243 103 NDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQ-PGDSLLFHFSGHGSQ 169 (392)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~-~gD~llfYFSGHG~~ 169 (392)
.-...++++|++ +|...++-....+ -|.+++.+-...|.+-.. ..|+|.||.-|-...
T Consensus 22 kR~~kv~k~~~~-yg~rvQ~SVFe~~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~~~~~ 80 (100)
T 4es1_A 22 KRLRKVAKACQN-YGQRVQNSVFECI--------VDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYK 80 (100)
T ss_dssp HHHHHHHHHHHT-TEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCTTTCEEEEEEECCCSS
T ss_pred HHHHHHHHHHHH-hChhheeeEEEEE--------cCHHHHHHHHHHHHhhcCCCCCEEEEEEcCCCcc
Confidence 345567788874 6755443222222 345554443344444343 469999999885543
No 64
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=28.36 E-value=2.3e+02 Score=26.33 Aligned_cols=58 Identities=3% Similarity=-0.038 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Q 016243 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~ 168 (392)
....+.+++.|.+.+|.++++|.+ +.. . .++|..++..+....++||.|++---.|..
T Consensus 68 ~~~~~~l~~~la~~~g~~~~~v~~-~~g-------~-t~al~~~~~~l~~~~~~gd~vi~~~~~~~~ 125 (406)
T 3cai_A 68 AAVLDAAREAVADLVNADPGGVVL-GAD-------R-AVLLSLLAEASSSRAGLGYEVIVSRLDDEA 125 (406)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-ESC-------H-HHHHHHHHHHTGGGGBTTCEEEEETTSCGG
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEE-eCC-------h-HHHHHHHHHHHhhccCCCCEEEEcCCccHH
Confidence 445677888888878887777755 432 2 355655555553346799998875555543
No 65
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=27.49 E-value=26 Score=22.49 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=23.7
Q ss_pred ccCCCCCCc---cccCCCCceeeccccCceeccc
Q 016243 5 VDCSKCRTT---LQLPPGAQSIRCAICQAITHIA 35 (392)
Q Consensus 5 ~~C~~C~~~---l~~p~~a~~vrC~~C~~vt~v~ 35 (392)
|-|+.|+.+ |..-.+.-..+|..|.+.+.|.
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCccccc
Confidence 568899875 5555566679999999888775
No 66
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.82 E-value=21 Score=26.59 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=19.0
Q ss_pred ccCCCCCCccccCCCCceeeccccCc
Q 016243 5 VDCSKCRTTLQLPPGAQSIRCAICQA 30 (392)
Q Consensus 5 ~~C~~C~~~l~~p~~a~~vrC~~C~~ 30 (392)
-.|+.|+..+.+-.+ ..|+|..|..
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 369999998766533 4579999986
No 67
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=26.50 E-value=2.9e+02 Score=25.24 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccCC-CCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Q 016243 105 ARCMKYMLTNRFKF-PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (392)
Q Consensus 105 a~~m~~~L~~~~Gf-~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~ 168 (392)
...+++.|.+.+|. +.++|.+... +.+.+..+++.+ +++||.+++---+|..
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~g---------~t~a~~~~~~~~---~~~gd~Vl~~~~~~~~ 121 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGNG---------SDEIISMLALAA---ARPGAKVMAPVPGFVM 121 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEH---------HHHHHHHHHHHT---CCTTCEEEEEESCSCC
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCC---------HHHHHHHHHHHH---cCCCCEEEEcCCCHHH
Confidence 35677777777787 5556655332 344555555544 5689988876655554
No 68
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=25.64 E-value=40 Score=28.67 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.2
Q ss_pred HHHHhCCCCCEEEEEEec
Q 016243 148 WLIQGCQPGDSLLFHFSG 165 (392)
Q Consensus 148 ~L~~~~~~gD~llfYFSG 165 (392)
.++...+.||.+|||=|+
T Consensus 38 n~mr~Mk~GD~~ffYHS~ 55 (145)
T 2gbs_A 38 LHMVAMRRGDRAFYYHSN 55 (145)
T ss_dssp HHHHHCCTTCEEEEEETT
T ss_pred HHHHhcCCCCEEEEEEeC
Confidence 344467899999999886
No 69
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=25.48 E-value=2.7e+02 Score=25.24 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Q 016243 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~ 168 (392)
......+++.|.+.+|.++++|.+... +.+.|..+++.+ +++||.+++---+|..
T Consensus 50 ~~~~~~l~~~la~~~~~~~~~i~~~~g---------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~ 104 (354)
T 3ly1_A 50 KNEILMLGNKLAAHHQVEAPSILLTAG---------SSEGIRAAIEAY---ASLEAQLVIPELTYGD 104 (354)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSSCTH
T ss_pred CCchHHHHHHHHHHhCCChHHEEEeCC---------hHHHHHHHHHHH---hCCCCeEEECCCCchH
Confidence 345677888888888887777765433 345566666655 4689998887666654
No 70
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=25.00 E-value=81 Score=24.87 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCC-CCCEEEEEEecCcc
Q 016243 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQ-PGDSLLFHFSGHGS 168 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~-~gD~llfYFSGHG~ 168 (392)
..-...+++.|++ +|...++-....+ -|.+++......|.+-.. ..|+|.||.-+-..
T Consensus 24 ~kr~~kv~k~l~~-yG~rvQ~SVFe~~--------lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~~~ 82 (103)
T 3oq2_A 24 QRRLRRIAKACQD-YGQRVQYSVFECV--------VDPAQWAKLKHRLLSEMDKEKDCLRFYYLGANW 82 (103)
T ss_dssp HHHHHHHHHHHGG-GEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCTTTCEEEEEEEETTG
T ss_pred HHHHHHHHHHHHH-hCccceEEEEEEE--------cCHHHHHHHHHHHHHhcCCCCCEEEEEEeCccc
Confidence 4567778888874 6744332222222 455565554455555554 47999999887543
No 71
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=25.00 E-value=43 Score=28.86 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHHHhCCCCCEEEEEEec
Q 016243 147 YWLIQGCQPGDSLLFHFSG 165 (392)
Q Consensus 147 ~~L~~~~~~gD~llfYFSG 165 (392)
+.++...+.||.+|||=|+
T Consensus 38 rN~mr~Mk~GD~~fFYHS~ 56 (155)
T 1zce_A 38 RNNMRAMKIGDKGFFYHSN 56 (155)
T ss_dssp HHHHHTCCTTCEEEEEETT
T ss_pred HHHHHhccCCCEEEEEEeC
Confidence 3444567899999999887
No 72
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=24.93 E-value=1e+02 Score=28.14 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHH-hCCCCCEEEEE
Q 016243 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ-GCQPGDSLLFH 162 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~-~~~~gD~llfY 162 (392)
..-.+.+++.|.+.+|.++++|.+... ..+.+..++..+.. ..++||.|++-
T Consensus 42 ~~~~~~~~~~la~~~~~~~~~i~~~~g---------~~~a~~~~~~~~~~~~~~~gd~vi~~ 94 (382)
T 4hvk_A 42 REAVQEAREKVAKLVNGGGGTVVFTSG---------ATEANNLAIIGYAMRNARKGKHILVS 94 (382)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEEESS---------HHHHHHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcCeEEEECC---------chHHHHHHHHHhhhhhcCCCCEEEEC
Confidence 444557888888888887766655433 34455556665542 22589999884
No 73
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.53 E-value=2.7e+02 Score=23.06 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=35.3
Q ss_pred eEEEEEEeCCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEE
Q 016243 82 KRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLF 161 (392)
Q Consensus 82 k~ALlIGI~Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llf 161 (392)
++.+++|+. ++..-|..++..|. +.|.+ +..+.+. + ..+ .......+++|. +|
T Consensus 40 ~~I~i~G~G---------~S~~~a~~~~~~l~-~~g~~---~~~~~~~-------~--~~~----~~~~~~~~~~d~-~i 92 (187)
T 3sho_A 40 DHVIVVGMG---------FSAAVAVFLGHGLN-SLGIR---TTVLTEG-------G--STL----TITLANLRPTDL-MI 92 (187)
T ss_dssp SEEEEECCG---------GGHHHHHHHHHHHH-HTTCC---EEEECCC-------T--HHH----HHHHHTCCTTEE-EE
T ss_pred CEEEEEecC---------chHHHHHHHHHHHH-hcCCC---EEEecCC-------c--hhH----HHHHhcCCCCCE-EE
Confidence 578888854 34567777888886 46775 5555521 1 122 222345667764 55
Q ss_pred EEecCcc
Q 016243 162 HFSGHGS 168 (392)
Q Consensus 162 YFSGHG~ 168 (392)
.||--|.
T Consensus 93 ~iS~sG~ 99 (187)
T 3sho_A 93 GVSVWRY 99 (187)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 5776554
No 74
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=24.19 E-value=1.2e+02 Score=27.97 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEecCccccC
Q 016243 137 PTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQR 171 (392)
Q Consensus 137 pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~~~~ 171 (392)
|+-..-..++.++.++..+++.+++..+|||....
T Consensus 266 pssa~alaa~~~~~~~~~~~~~vv~i~tg~g~ky~ 300 (303)
T 1o58_A 266 ISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 300 (303)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCCEEEEECBBGGGCT
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEECCCCcccc
Confidence 55555555565666666689999999999998754
No 75
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=24.09 E-value=47 Score=29.06 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.7
Q ss_pred HHHHhCCCCCEEEEEEecC
Q 016243 148 WLIQGCQPGDSLLFHFSGH 166 (392)
Q Consensus 148 ~L~~~~~~gD~llfYFSGH 166 (392)
.++...+.||.+|||-|+.
T Consensus 54 N~mr~Mk~GD~vfFYHS~c 72 (172)
T 2ar1_A 54 NNMRAMSVGDKVLFYHSNT 72 (172)
T ss_dssp HHHHHCCTTCEEEEEECSS
T ss_pred HHHHhcCCCCEEEEEecCC
Confidence 3444678999999998874
No 76
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=24.05 E-value=3e+02 Score=25.13 Aligned_cols=54 Identities=9% Similarity=-0.029 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhccCCC-CCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCc
Q 016243 102 INDARCMKYMLTNRFKFP-ESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~-~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG 167 (392)
..-.+.+++.|.+.+|.+ .++|. ++.. ..+.+..++..+ +++||.|++.=-+|.
T Consensus 52 ~~~~~~~~~~la~~~g~~~~~~v~-~~~g--------~t~a~~~~~~~l---~~~gd~vl~~~~~~~ 106 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVEKGEVLL-VPSS--------GTGIMEASIRNG---VSKGGKVLVTIIGAF 106 (386)
T ss_dssp HHHHHHHHHHHHHHHTCSSSEEEE-ESSC--------HHHHHHHHHHHH---SCTTCEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEE-EeCC--------hHHHHHHHHHHh---hcCCCeEEEEcCCch
Confidence 455667888888778887 44454 4442 355566666665 568998887665664
No 77
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=24.03 E-value=35 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=23.0
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~vt 32 (392)
...|+.|+..+.+......+.|..|....
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 45699999977666666799999998764
No 78
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.34 E-value=54 Score=26.39 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCCcccCCCCCCccccCCCC----ceeeccccCceecccC
Q 016243 1 MLMLVDCSKCRTTLQLPPGA----QSIRCAICQAITHIAD 36 (392)
Q Consensus 1 ~~~~~~C~~C~~~l~~p~~a----~~vrC~~C~~vt~v~~ 36 (392)
|....-|+.|+..|.+..+. ..+.|..|.++-.+..
T Consensus 1 m~~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 1 MSNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp --CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred CCcceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 56677899999976555432 3699999998877653
No 79
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=23.23 E-value=1.4e+02 Score=27.61 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEecCccccCC
Q 016243 137 PTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRN 172 (392)
Q Consensus 137 pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~~~~d 172 (392)
|+-..-..++.++.++..+++.+++..+|||....+
T Consensus 262 pssa~a~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~ 297 (304)
T 1ve1_A 262 MSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297 (304)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEECBBSGGGTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEECCCCccCCC
Confidence 544444555555555556889999999999988654
No 80
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.19 E-value=49 Score=23.91 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=19.7
Q ss_pred cccCCCCCCccccCCCCceeeccccCceecccC
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
...|..|+++-. .-.|..|...|.+.-
T Consensus 5 mr~C~~Cg~YTL------k~~CP~CG~~t~~ah 31 (60)
T 2aus_D 5 IRKCPKCGRYTL------KETCPVCGEKTKVAH 31 (60)
T ss_dssp CEECTTTCCEES------SSBCTTTCSBCEESS
T ss_pred ceECCCCCCEEc------cccCcCCCCccCCCC
Confidence 456999987533 334999998888874
No 81
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=23.19 E-value=51 Score=28.41 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.0
Q ss_pred HHHHhCCCCCEEEEEEec
Q 016243 148 WLIQGCQPGDSLLFHFSG 165 (392)
Q Consensus 148 ~L~~~~~~gD~llfYFSG 165 (392)
.++...+.||.+|||=|+
T Consensus 36 N~mr~Mk~GD~~ffYHS~ 53 (157)
T 2eve_A 36 NFLRTMAEGDEFFFYHSS 53 (157)
T ss_dssp HHHHHCCTTCEEEEEECS
T ss_pred HHHHhcCCCCEEEEEecC
Confidence 344467799999999776
No 82
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.99 E-value=67 Score=30.01 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 016243 137 PTKYNMRMALYWLIQGCQPGDSLLFHFS 164 (392)
Q Consensus 137 pT~~nI~~al~~L~~~~~~gD~llfYFS 164 (392)
-|++.|.+.|+.| ++++||+|++|=|
T Consensus 15 ~t~~~l~~~L~~L--Gi~~Gd~llVHsS 40 (268)
T 3ijw_A 15 NTIKTITNDLRKL--GLKKGMTVIVHSS 40 (268)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 6999999999988 8889999999866
No 83
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=22.98 E-value=2.9e+02 Score=25.46 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhccCCCCC-ceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Q 016243 103 NDARCMKYMLTNRFKFPES-SIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (392)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~-~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~ 168 (392)
.-.+.+++.|.+.+|.+++ +|.+ +.. ..+.+..++..+ +++||.+++.=-+|..
T Consensus 67 ~~~~~~~~~la~~~g~~~~~~v~~-t~g--------~t~al~~~~~~~---~~~gd~Vl~~~~~~~~ 121 (393)
T 1vjo_A 67 ALMDEIQSLLRYVWQTENPLTIAV-SGT--------GTAAMEATIANA---VEPGDVVLIGVAGYFG 121 (393)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEE-SSC--------HHHHHHHHHHHH---CCTTCEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEE-eCc--------hHHHHHHHHHhc---cCCCCEEEEEcCChhH
Confidence 4456788888877888766 6654 432 355666666665 4689988876555543
No 84
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=22.50 E-value=2.7e+02 Score=25.57 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=33.4
Q ss_pred HHHHHHHHhcc-CCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Q 016243 106 RCMKYMLTNRF-KFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (392)
Q Consensus 106 ~~m~~~L~~~~-Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~ 168 (392)
..+++.|.+.+ +..+++|.+... ..+.+..++..+ +++||.|++.--+|..
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g---------~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~ 117 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNG---------ATGANLLVLYSL---IEPGDHVISLYPTYQQ 117 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESSCTH
T ss_pred HHHHHHHHHHhccCChhhEEEcCC---------hHHHHHHHHHHh---cCCCCEEEEeCCCchh
Confidence 35777777655 466777755433 345566666655 5699999988777764
No 85
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.17 E-value=45 Score=25.59 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=19.6
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~vt 32 (392)
.+.|+.|+..|. ......+|..|++--
T Consensus 2 ~~~CP~C~~~l~--~~~~~~~C~~C~~~~ 28 (81)
T 2jrp_A 2 EITCPVCHHALE--RNGDTAHCETCAKDF 28 (81)
T ss_dssp CCCCSSSCSCCE--ECSSEEECTTTCCEE
T ss_pred CCCCCCCCCccc--cCCCceECccccccC
Confidence 478999988765 345577899998643
No 86
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=21.83 E-value=4.5e+02 Score=23.80 Aligned_cols=59 Identities=10% Similarity=-0.085 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHh----------CCCCCEEEEEEecCccc
Q 016243 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG----------CQPGDSLLFHFSGHGSQ 169 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~----------~~~gD~llfYFSGHG~~ 169 (392)
..-.+.+++.|.+.+|.+.++|.+ ++. ..+.+..++..+... ..+||.|++--.+|...
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~-~~g--------gt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~ 136 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHI-VSG--------GTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSF 136 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEE-ESC--------HHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEE-ecC--------cHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHH
Confidence 344456888888888988877754 442 344566666665543 34699999988888754
No 87
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=21.65 E-value=1.5e+02 Score=27.54 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCc
Q 016243 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG 167 (392)
..-.+.+++.|.+.+|.+.+++.+++.. ..+.|..++..+ +++||.+++.--+|-
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s--------~t~al~~~~~~l---~~~gd~Vl~~~~~~~ 97 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGT--------SRAGIEAVLASV---IEPEDDVLIPIYGRF 97 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESC--------HHHHHHHHHHHH---CCTTCEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCc--------HHHHHHHHHHHh---cCCCCEEEEecCCcc
Confidence 3446778888888889887766656653 346676677666 679999888766643
No 88
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=21.64 E-value=1.8e+02 Score=27.09 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=28.6
Q ss_pred HHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Q 016243 107 CMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (392)
Q Consensus 107 ~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~ 168 (392)
.+++.+.+.+|.+.++|.+ ++ - .+.+..++..+ +++||.+++---+|+.
T Consensus 75 ~~~~~la~~~g~~~~~i~~-~s--------G-t~a~~~~~~~~---~~~gd~vl~~~~~~~~ 123 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANVQP-NS--------G-SQANQGVYAAL---INPGDKILGMDLSHGG 123 (417)
T ss_dssp HHHHHHHHHHTCSEEECCC-SS--------H-HHHHHHHHHHH---SCTTCEEEEECC----
T ss_pred HHHHHHHHHhCCCCcceEe-cc--------H-HHHHHHHHHHh---cCCCCEEEeccccccc
Confidence 3556777667876554532 32 2 36666666665 6799999877655543
No 89
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=21.63 E-value=74 Score=30.05 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=24.6
Q ss_pred CCccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 016243 135 KRPTKYNMRMALYWLIQGCQPGDSLLFHFS 164 (392)
Q Consensus 135 ~~pT~~nI~~al~~L~~~~~~gD~llfYFS 164 (392)
..-|++.|.+.|+.| ++++||+|++|=|
T Consensus 20 ~~~T~~~L~~~L~~L--GI~~Gd~llVHsS 47 (286)
T 3sma_A 20 ELVTRDRLASDLAAL--GVRPGGVLLVHAS 47 (286)
T ss_dssp CEECHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred CCcCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 457999999999998 8889999999865
No 90
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=21.59 E-value=47 Score=35.65 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=28.0
Q ss_pred CcccCCC--CCCcc----ccCCCCceeeccccCceecccC
Q 016243 3 MLVDCSK--CRTTL----QLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 3 ~~~~C~~--C~~~l----~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
..++|.+ |++++ .+-.+.+..+|..|...+.+..
T Consensus 61 ~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~ 100 (769)
T 2nut_A 61 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 100 (769)
T ss_dssp CCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCCEEECCG
T ss_pred CCCcCCCCCCCeEECCceEEeCCCCEEEccCCCCCCCCCh
Confidence 4689999 99975 4446788999999999998875
No 91
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.22 E-value=44 Score=26.56 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=21.0
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceec
Q 016243 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITH 33 (392)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~ 33 (392)
.|...|+.|...|.- .| ..+.|..|+.--.
T Consensus 30 ~M~~~CP~Cq~eL~~-~g-~~~hC~~C~~~f~ 59 (101)
T 2jne_A 30 HMELHCPQCQHVLDQ-DN-GHARCRSCGEFIE 59 (101)
T ss_dssp -CCCBCSSSCSBEEE-ET-TEEEETTTCCEEE
T ss_pred cccccCccCCCccee-cC-CEEECccccchhh
Confidence 466899999998753 23 3667999986443
No 92
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=21.21 E-value=2.9e+02 Score=25.71 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhccCC--CCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Q 016243 102 INDARCMKYMLTNRFKF--PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf--~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~ 168 (392)
..=-+.++++|.+.+|. ++++|.+... ..+.|..+++.+ +++||.|++-=-+|..
T Consensus 81 ~~lr~~la~~~~~~~g~~~~~~~v~~~~g---------~t~al~~~~~~l---~~~gd~Vl~~~~~~~~ 137 (389)
T 1o4s_A 81 YELREGIAKRIGERYKKDISPDQVVVTNG---------AKQALFNAFMAL---LDPGDEVIVFSPVWVS 137 (389)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEecC---------HHHHHHHHHHHh---CCCCCEEEEcCCCchh
Confidence 33344577777665675 5667755432 345566666655 5689988877666644
No 93
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=21.15 E-value=46 Score=35.76 Aligned_cols=34 Identities=32% Similarity=0.692 Sum_probs=27.8
Q ss_pred CcccCCC--CCCcc----ccCCCCceeeccccCceecccC
Q 016243 3 MLVDCSK--CRTTL----QLPPGAQSIRCAICQAITHIAD 36 (392)
Q Consensus 3 ~~~~C~~--C~~~l----~~p~~a~~vrC~~C~~vt~v~~ 36 (392)
..++|.+ |++++ .+-.+.+..+|..|...+.+..
T Consensus 52 ~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~ 91 (768)
T 1m2o_A 52 NPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPP 91 (768)
T ss_dssp CCCBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCCBCCG
T ss_pred CCCccCCCCCCeEECCceEEeCCCCEEEcccCCCCCCCCh
Confidence 4689999 99975 3446778999999999998875
No 94
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=20.86 E-value=60 Score=27.36 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=12.5
Q ss_pred HHHhCCCCCEEEEEEec
Q 016243 149 LIQGCQPGDSLLFHFSG 165 (392)
Q Consensus 149 L~~~~~~gD~llfYFSG 165 (392)
++.+.++||.+||| .+
T Consensus 34 ~lr~Mk~GD~~~fY-~~ 49 (147)
T 2p5d_A 34 TINKVKVGDKLIIY-EI 49 (147)
T ss_dssp HHTTCCTTCEEEEE-EC
T ss_pred HHHhCCCCCEEEEE-Ee
Confidence 34467899999999 55
No 95
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A*
Probab=20.74 E-value=1.5e+02 Score=29.91 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCC----------CCCEEEEEEecCccccCCC
Q 016243 105 ARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQ----------PGDSLLFHFSGHGSQQRNY 173 (392)
Q Consensus 105 a~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~----------~gD~llfYFSGHG~~~~d~ 173 (392)
..++...|..+-.|+- ...++. .+++++.+.|+.+..+-. ..-.++|-|+|.|.|..+.
T Consensus 87 l~dla~tla~R~~~~~-R~~vva---------~~~~el~~~L~a~a~g~~~~~~~~~~~~~~~~~vfvF~GQGsQ~~gM 155 (491)
T 3tzy_A 87 LESIGRSLSRRNHGRS-RAVVLA---------HDHDEAIKGLRAVAAGKQAPNVFSVDGPVTTGPVWVLAGFGAQHRKM 155 (491)
T ss_dssp HHHHHHHHHHSCCCSE-EEEEEE---------SSHHHHHHHHHHHHTTCCCTTEEEESSCCSSCCEEEECCTTTCCTTT
T ss_pred HHHHHHHHhcccCCCc-eEEEEE---------CCHHHHHHhhhhhhcCCCCCCceeccCCCCCCEEEEECCCCcchhhh
Confidence 3456666765544542 233333 368899999998876422 2234679999999998865
No 96
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=20.73 E-value=79 Score=29.54 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 016243 137 PTKYNMRMALYWLIQGCQPGDSLLFHFS 164 (392)
Q Consensus 137 pT~~nI~~al~~L~~~~~~gD~llfYFS 164 (392)
-|++.|.+.|+.| ++++||+|++|=|
T Consensus 13 ~T~~~L~~~L~~L--GI~~Gd~llVHsS 38 (273)
T 2nyg_A 13 RTKQSITEDLKAL--GLKKGMTVLVHSS 38 (273)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 6899999999988 8889999999865
No 97
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=20.61 E-value=58 Score=21.88 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=20.8
Q ss_pred cccCCCCCCccccCCCCceeeccccCceeccc
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAITHIA 35 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~vt~v~ 35 (392)
...|..|+..|+ +..+|..|+..-...
T Consensus 14 pt~C~~C~~~l~-----qG~~C~~C~~~~H~~ 40 (52)
T 1faq_A 14 LAFCDICQKFLL-----NGFRCQTCGYKFHEH 40 (52)
T ss_dssp CEECTTSSSEEC-----SEEECTTTTCCBCST
T ss_pred CcCCCCcccccc-----cCCEeCCCCCeEChh
Confidence 467999999887 789999998555433
No 98
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=20.49 E-value=43 Score=29.89 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=21.0
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 016243 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (392)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~vrC~~C~~vt 32 (392)
...|..|+..+.. ...+.+|..||.+.
T Consensus 2 ~~~Cp~C~~~~~~--~~~~~~C~~~~~~~ 28 (269)
T 1p91_A 2 SFSCPLCHQPLSR--EKNSYICPQRHQFD 28 (269)
T ss_dssp CBBCTTTCCBCEE--ETTEEECTTCCEEE
T ss_pred cccCCCCCcccee--CCCEEECCCCCcCC
Confidence 4789999998755 33578999999764
No 99
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=20.21 E-value=2.6e+02 Score=25.18 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEccCCCCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEecCccc
Q 016243 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQ 169 (392)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~~~~gD~llfYFSGHG~~ 169 (392)
..-.+.+++.|.+.+|.+.++|.+... ..+.+..+++.+ .++||.+++.=-+|...
T Consensus 48 ~~~~~~~~~~l~~~~g~~~~~v~~~~g---------~t~a~~~~~~~~---~~~gd~vl~~~~~~~~~ 103 (359)
T 1svv_A 48 DSHCAKAARLIGELLERPDADVHFISG---------GTQTNLIACSLA---LRPWEAVIATQLGHIST 103 (359)
T ss_dssp SHHHHHHHHHHHHHHTCTTSEEEEESC---------HHHHHHHHHHHH---CCTTEEEEEETTSHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCccEEEeCC---------chHHHHHHHHHH---hCCCCEEEEcccchHHH
Confidence 445667888888777877766654433 345566666655 45899888765455443
Done!