BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016246
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 231/392 (58%), Gaps = 13/392 (3%)
Query: 6 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNE 65
VV + AR + E+AQVGT +ANG+ IG+ IA+ ++ +IT+ + K + E
Sbjct: 127 VVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETE 186
Query: 66 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM---MQ 122
+ V+GM+ + G SPYF T+ +K L+ A +L+++ K+S+ Q +P + +Q
Sbjct: 187 VEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSS----LQPMVPLLESVIQ 242
Query: 123 GQ-SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLT 181
Q LL+VAEDVE E L + + K+ +KA G + RKA+++D+AILTGGQV++
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302
Query: 182 GGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD--- 238
GM LG K+V DN I+ G+GE +I+ R Q+R I+ +TSD
Sbjct: 303 EDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDR 362
Query: 239 -KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYA 297
KL++R+AKL+GG AV++V G + EV+E+K ++ +AL+A +AA +EGIV G GVAL+
Sbjct: 363 EKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQG 422
Query: 298 SKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPA 356
+K L+ L NSDQ G+ I++ AL+ IA NAGVDG+V+ K+ E G+N
Sbjct: 423 AKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQ 482
Query: 357 RGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
Y DMFK G +DP K V + A S+ L
Sbjct: 483 TEEYGDMFKFGVIDPAKVVRTALEDAASVAGL 514
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 16/398 (4%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A +A V + A + + I +V T +AN D E+G+LIA EK + +IT+ + K+
Sbjct: 122 AVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKS 180
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMM 121
L EL FV+G + + G SPYF T+ E VL+ A +LI + K+SN +R+ LP +
Sbjct: 181 LETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSN---VREL-LPILE 236
Query: 122 Q----GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
Q G+ LL++AEDVE E L + + T V +KA G + RK +++D+A +TGG
Sbjct: 237 QVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGG 296
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ G LG +RV T D I+GG G+ DI+ R ++ ++ + S
Sbjct: 297 TVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDS 356
Query: 238 ----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
+KL++RLAKL+GG AV++V + E++EKK + +AL+A +AA EEGIVPG GV
Sbjct: 357 EYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVT 416
Query: 294 LLYASKELDKL-QTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDK--LLEQDSSD 350
LL A +++L + D+ G +IV+ AL+ A IA NAG +GSVI + L E +
Sbjct: 417 LLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPR 476
Query: 351 LGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
G+N A G +VDM + G VDP K S A S+ +L
Sbjct: 477 YGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGAL 514
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 216/395 (54%), Gaps = 12/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A A V L + + + IAQVGT +AN D +G+LIA+ +K + +IT+ D
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM- 120
L +EL+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLE 237
Query: 121 ---MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG
Sbjct: 238 AVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG 297
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ GM LG KRV+ D II G GE IQ R Q+R I+ +TS
Sbjct: 298 TVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATS 357
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++R+AKL+GG AV+KV + E++EKK ++ +ALHA +AA EEG+V G GVA
Sbjct: 358 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVA 417
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
L+ + +L L+ N DQ +G+++ A++ I N G + SV+ ++ + GY
Sbjct: 418 LIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N A Y +M G +DP K S A S+ L
Sbjct: 478 NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 512
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 216/395 (54%), Gaps = 12/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A A V L + + + IAQVGT +AN D +G+LIA+ +K + +IT+ D
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM- 120
L +EL+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLE 237
Query: 121 ---MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG
Sbjct: 238 AVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG 297
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ GM LG KRV+ D II G GE IQ R Q+R I+ +TS
Sbjct: 298 TVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATS 357
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++R+AKL+GG AV+KV + E++EKK ++ +ALHA +AA EEG+V G GVA
Sbjct: 358 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVA 417
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
L+ + +L L+ N DQ +G+++ A++ I N G + SV+ ++ + GY
Sbjct: 418 LIRVASKLADLRGQNKDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N A Y +M G +DP K S A S+ L
Sbjct: 478 NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 512
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 210/374 (56%), Gaps = 12/374 (3%)
Query: 23 IAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPY 82
IAQVGT +AN D +G+LIA+ +K + +IT+ D L +EL+ V+GM+ + G SPY
Sbjct: 143 IAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPY 202
Query: 83 FFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQSLLVVAEDVENEVL 138
F L+ +L+ D KISN IR+ LP + G+ LL++AEDVE E L
Sbjct: 203 FINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKPLLIIAEDVEGEAL 258
Query: 139 GDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198
+ + KV +KA G + RKA+++D+A LTGG V++ GM LG
Sbjct: 259 ATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318
Query: 199 CKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 254
KRV+ D II G GE IQ R Q+R I+ +TSD KL++R+AKL+GG AV+
Sbjct: 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 378
Query: 255 KVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIG 314
KV + E++EKK ++ +ALHA +AA EEG+V G GVAL+ + +L L+ N+DQ +G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNADQNVG 438
Query: 315 VQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH 374
+++ A++ I N G + SV+ ++ + GYN A Y +M G +DP K
Sbjct: 439 IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKV 498
Query: 375 VPSEFAKATSMISL 388
S A S+ L
Sbjct: 499 TRSALQYAASVAGL 512
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 234 bits (597), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 216/395 (54%), Gaps = 12/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A A V L + + + IAQVGT +AN D +G+LIA+ +K + +IT+ D
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM- 120
L +EL+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLE 237
Query: 121 ---MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG
Sbjct: 238 AVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG 297
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ GM LG KRV+ D II G GE IQ R Q+R I+ +TS
Sbjct: 298 TVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATS 357
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++R+AKL+GG AV+KV + E++EKK ++ +ALHA +AA EEG+V G GVA
Sbjct: 358 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVA 417
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
L+ + +L L+ N DQ +G+++ A++ I N G + SV+ ++ + GY
Sbjct: 418 LIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N A Y +M G +DP K S A S+ L
Sbjct: 478 NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 512
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 234 bits (597), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 216/395 (54%), Gaps = 12/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A A V L + + + IAQVGT +AN D +G+LIA+ +K + +IT+ D
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM- 120
L +EL+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLE 237
Query: 121 ---MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG
Sbjct: 238 AVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG 297
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ GM LG KRV+ D II G GE IQ R Q+R I+ +TS
Sbjct: 298 TVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATS 357
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++R+AKL+GG AV+KV + E++EKK ++ +ALHA +AA EEG+V G GVA
Sbjct: 358 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVA 417
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
L+ + +L L+ N DQ +G+++ A++ I N G + SV+ ++ + GY
Sbjct: 418 LIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N A Y +M G +DP K S A S+ L
Sbjct: 478 NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 512
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 209/374 (55%), Gaps = 12/374 (3%)
Query: 23 IAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPY 82
IAQVGT +AN D +G+LIA+ +K + +IT+ D L +EL+ V+GM+ + G SPY
Sbjct: 143 IAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPY 202
Query: 83 FFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQSLLVVAEDVENEVL 138
F L+ +L+ D KISN IR+ LP + G+ LL++AEDVE E L
Sbjct: 203 FINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKPLLIIAEDVEGEAL 258
Query: 139 GDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198
+ + KV +KA G + RKA+++D+A LTGG V++ GM LG
Sbjct: 259 ATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318
Query: 199 CKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 254
KRV+ D II G GE IQ R Q+R I+ +TSD KL++R+AKL+GG AV+
Sbjct: 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 378
Query: 255 KVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIG 314
KV + E++EKK ++ +ALHA +AA EEG+V G GVAL+ + +L L+ N DQ +G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVG 438
Query: 315 VQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH 374
+++ A++ I N G + SV+ ++ + GYN A Y +M G +DP K
Sbjct: 439 IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKV 498
Query: 375 VPSEFAKATSMISL 388
S A S+ L
Sbjct: 499 TRSALQYAASVAGL 512
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 209/374 (55%), Gaps = 12/374 (3%)
Query: 23 IAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPY 82
IAQVGT +AN D +G+LIA+ +K + +IT+ D L +EL+ V+GM+ + G SPY
Sbjct: 143 IAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPY 202
Query: 83 FFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQSLLVVAEDVENEVL 138
F L+ +L+ D KISN IR+ LP + G+ LL++AEDVE E L
Sbjct: 203 FINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKPLLIIAEDVEGEAL 258
Query: 139 GDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198
+ + KV +KA G + RKA+++D+A LTGG V++ GM LG
Sbjct: 259 ATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318
Query: 199 CKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 254
KRV+ D II G GE IQ R Q+R I+ +TSD KL++R+AKL+GG AV+
Sbjct: 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 378
Query: 255 KVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIG 314
KV + E++EKK ++ +ALHA +AA EEG+V G GVAL+ + +L L+ N DQ +G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVG 438
Query: 315 VQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH 374
+++ A++ I N G + SV+ ++ + GYN A Y +M G +DP K
Sbjct: 439 IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKV 498
Query: 375 VPSEFAKATSMISL 388
S A S+ L
Sbjct: 499 TRSALQYAASVAGL 512
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 209/374 (55%), Gaps = 12/374 (3%)
Query: 23 IAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPY 82
IAQVGT +AN D +G+LIA+ +K + +IT+ D L +EL+ V+GM+ + G SPY
Sbjct: 143 IAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPY 202
Query: 83 FFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQSLLVVAEDVENEVL 138
F L+ +L+ D KISN IR+ LP + G+ LL++AEDVE E L
Sbjct: 203 FINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKPLLIIAEDVEGEAL 258
Query: 139 GDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198
+ + KV +KA G + RKA+++D+A LTGG V++ GM LG
Sbjct: 259 ATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318
Query: 199 CKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 254
KRV+ D II G GE IQ R Q+R I+ +TSD KL++R+AKL+GG AV+
Sbjct: 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 378
Query: 255 KVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIG 314
KV + E++EKK ++ +ALHA +AA EEG+V G GVAL+ + +L L+ N DQ +G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVG 438
Query: 315 VQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH 374
+++ A++ I N G + SV+ ++ + GYN A Y +M G +DP K
Sbjct: 439 IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKV 498
Query: 375 VPSEFAKATSMISL 388
S A S+ L
Sbjct: 499 TRSALQYAASVAGL 512
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 234 bits (596), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 216/395 (54%), Gaps = 12/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A A V L + + + IAQVGT +AN D +G+LIA+ +K + +IT+ D
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM- 120
L +EL+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLE 237
Query: 121 ---MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG
Sbjct: 238 AVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG 297
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ GM LG KRV+ D II G GE IQ R Q+R I+ +TS
Sbjct: 298 TVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATS 357
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++R+AKL+GG AV+KV + E++EKK ++ ALHA +AA EEG+V G GVA
Sbjct: 358 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGVVAGGGVA 417
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
L+ + +L L+ N+DQ +G+++ A++ I N G + SV+ ++ + GY
Sbjct: 418 LIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 477
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N A Y +M G +DP K S A S+ L
Sbjct: 478 NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 512
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 215/395 (54%), Gaps = 12/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A A V L + + + IAQVGT +AN D +G+LIA+ +K + +IT+ D
Sbjct: 123 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 182
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM- 120
L +EL+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 183 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLE 238
Query: 121 ---MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG
Sbjct: 239 AVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG 298
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ GM LG KRV+ D II G GE IQ R Q+R I+ +TS
Sbjct: 299 TVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATS 358
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++R+AKL+GG AV+KV + E++EKK ++ +ALHA +AA EEG+V G GVA
Sbjct: 359 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVA 418
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
L+ + +L L+ N DQ +G+++ A++ I N G SV+ ++ + GY
Sbjct: 419 LIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEKPSVVANTVKGGDGNYGY 478
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N A Y +M G +DP K S A S+ L
Sbjct: 479 NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 513
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 215/395 (54%), Gaps = 12/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A A V L + + + IAQVGT +AN D +G+LIA+ +K + +IT+ D
Sbjct: 123 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 182
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM- 120
L +EL+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 183 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLE 238
Query: 121 ---MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG
Sbjct: 239 AVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG 298
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
V++ GM LG KRV+ D II G GE IQ R Q+R I+ +TS
Sbjct: 299 TVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATS 358
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++R+AKL+GG AV+KV + E++EKK ++ ALHA +AA EEG+V G GVA
Sbjct: 359 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGVVAGGGVA 418
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
L+ + +L L+ N DQ +G+++ A++ I N G + SV+ ++ + GY
Sbjct: 419 LIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGY 478
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N A Y +M G +DP K S A S+ L
Sbjct: 479 NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 513
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 208/374 (55%), Gaps = 12/374 (3%)
Query: 23 IAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPY 82
IAQVGT +AN D +G+LIA+ +K + +IT+ D L +EL+ V+GM+ + G SPY
Sbjct: 143 IAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPY 202
Query: 83 FFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQSLLVVAEDVENEVL 138
F L+ +L+ D KISN IR+ LP + G+ LL++AEDVE E L
Sbjct: 203 FINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKPLLIIAEDVEGEAL 258
Query: 139 GDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198
+ KV +KA G + RKA+++D+A LTGG V++ GM LG
Sbjct: 259 ATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318
Query: 199 CKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 254
KRV+ D II G GE IQ R Q+R I+ +TSD KL++R+AKL+GG AV+
Sbjct: 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 378
Query: 255 KVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIG 314
KV + E++EKK ++ +ALHA +AA EEG+V G GVAL+ + +L L+ N DQ +G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVG 438
Query: 315 VQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH 374
+++ A++ I N G + SV+ ++ + GYN A Y +M G +DP K
Sbjct: 439 IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKV 498
Query: 375 VPSEFAKATSMISL 388
S A S+ L
Sbjct: 499 TRSALQYAASVAGL 512
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 208/374 (55%), Gaps = 12/374 (3%)
Query: 23 IAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPY 82
IAQVGT +AN D +G+LIA+ +K + +IT+ D L +EL+ V+GM+ + G SPY
Sbjct: 143 IAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPY 202
Query: 83 FFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQSLLVVAEDVENEVL 138
F L+ +L+ D KISN IR+ LP + G+ LL++AEDVE E L
Sbjct: 203 FINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKPLLIIAEDVEGEAL 258
Query: 139 GDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198
+ KV +KA G + RKA+++D+A LTGG V++ GM LG
Sbjct: 259 ATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318
Query: 199 CKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 254
KRV+ D II G GE IQ R Q+R I+ +TSD KL++R+AKL+GG AV+
Sbjct: 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 378
Query: 255 KVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIG 314
KV + E++EKK ++ +ALHA +AA EEG+V G GVAL+ + +L L+ N DQ +G
Sbjct: 379 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVG 438
Query: 315 VQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH 374
+++ A++ I N G + SV+ ++ + GYN A Y +M G +DP K
Sbjct: 439 IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKV 498
Query: 375 VPSEFAKATSMISL 388
S A S+ L
Sbjct: 499 TRSALQYAASVAGL 512
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 208/374 (55%), Gaps = 12/374 (3%)
Query: 23 IAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPY 82
IAQVGT +AN D +G+LIA+ +K + +IT+ D L +EL+ V+GM+ + G SPY
Sbjct: 144 IAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPY 203
Query: 83 FFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQSLLVVAEDVENEVL 138
F L+ +L+ D KISN IR+ LP + G+ LL++AEDVE E L
Sbjct: 204 FINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKPLLIIAEDVEGEAL 259
Query: 139 GDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 198
+ KV +KA G + RKA+++D+A LTGG V++ GM LG
Sbjct: 260 ATAVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 319
Query: 199 CKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVL 254
KRV+ D II G GE IQ R Q+R I+ +TSD KL++R+AKL+GG AV+
Sbjct: 320 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVI 379
Query: 255 KVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIG 314
KV + E++EKK ++ +ALHA +AA EEG+V G GVAL+ + +L L+ N DQ +G
Sbjct: 380 KVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVG 439
Query: 315 VQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH 374
+++ A++ I N G + SV+ ++ + GYN A Y +M G +DP K
Sbjct: 440 IKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKV 499
Query: 375 VPSEFAKATSMISL 388
S A S+ L
Sbjct: 500 TRSALQYAASVAGL 513
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 212/395 (53%), Gaps = 14/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A + V L A+++ T E+IA +A GD IG+LIA+ +K +IT+ +
Sbjct: 122 AVEKVTETLLKGAKEVETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEESNT 180
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMM 121
+L +GM+ + G S YF T ++E VL+ +L+ +K+S + LP +
Sbjct: 181 FGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDL----LPLLE 236
Query: 122 Q----GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
+ G+ LL++AEDVE E L + + T K +KA G + RKA+++D+AILTGG
Sbjct: 237 KVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGG 296
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
QV++ G+ LG ++V+ T D I+ G+G+ I R Q+R I+ S S
Sbjct: 297 QVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDS 356
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++RLAKL+GG AV+K + E++E+K +I +A+ +AA EEGIV G GV
Sbjct: 357 DYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVT 416
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
LL A+ LD+L+ D+ G IV+ AL+ IA N+G++ V+ + + + G
Sbjct: 417 LLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGL 475
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N G Y D+ G DP+K S A S+ L
Sbjct: 476 NAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGL 510
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 212/395 (53%), Gaps = 14/395 (3%)
Query: 2 AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
A + V L A+++ T E+IA +A GD IG+LIA+ +K +IT+ +
Sbjct: 80 AVEKVTETLLKGAKEVETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEESNT 138
Query: 62 LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMM 121
+L +GM+ + G S YF T ++E VL+ +L+ +K+S + LP +
Sbjct: 139 FGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDL----LPLLE 194
Query: 122 Q----GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
+ G+ LL++AEDVE E L + + T K +KA G + RKA+++D+AILTGG
Sbjct: 195 KVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGG 254
Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
QV++ G+ LG ++V+ T D I+ G+G+ I R Q+R I+ S S
Sbjct: 255 QVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDS 314
Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
D KL++RLAKL+GG AV+K + E++E+K +I +A+ +AA EEGIV G GV
Sbjct: 315 DYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVT 374
Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGY 353
LL A+ LD+L+ D+ G IV+ AL+ IA N+G++ V+ + + + G
Sbjct: 375 LLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGL 433
Query: 354 NPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
N G Y D+ G DP+K S A S+ L
Sbjct: 434 NAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGL 468
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 107/196 (54%), Gaps = 12/196 (6%)
Query: 67 NFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQ 122
+ V+GM+ + G SPYF L+ +L+ D KISN IR+ LP +
Sbjct: 1 DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKA 56
Query: 123 GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 182
G+ LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG V++
Sbjct: 57 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 116
Query: 183 GSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD---- 238
GM LG KRV+ D II G GE IQ R Q+R I+ +TSD
Sbjct: 117 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 176
Query: 239 KLKDRLAKLSGGYAVL 254
KL++R+AKL+GG AV+
Sbjct: 177 KLQERVAKLAGGVAVI 192
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 70 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQS 125
+GM+ + G SPYF E L+ +L+ D KISN IR+ LP + G+
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLVDKKISN---IREL-LPVLEAVAKAGKP 63
Query: 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 185
LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG V++ G
Sbjct: 64 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELG 123
Query: 186 MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLK 241
M LG KRV+ T D II G GE IQ R Q+R I+ +TSD KL+
Sbjct: 124 MKLEKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 183
Query: 242 DRLAKLSGG 250
+R+AKL+GG
Sbjct: 184 ERVAKLAGG 192
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 104/189 (55%), Gaps = 12/189 (6%)
Query: 70 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQS 125
+GM+ + G SPYF E L+ +L+ D KISN IR+ LP + G+
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLTDKKISN---IREL-LPVLEAVAKAGKP 63
Query: 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 185
LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG V++ G
Sbjct: 64 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELG 123
Query: 186 MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLK 241
M LG KRV+ T D II G GE IQ R Q+R I+ +TSD KL+
Sbjct: 124 MKLEKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 183
Query: 242 DRLAKLSGG 250
+R+AKL+GG
Sbjct: 184 ERVAKLAGG 192
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
Apical Domain
Length = 194
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 65 ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQ 124
EL F +G+ + G S YF T + ++ VL+ AL+L++ KIS+ + G+
Sbjct: 1 ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60
Query: 125 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 184
LL+VAEDVE E L + + T K +K + RKA +EDLA++TGGQV+ +
Sbjct: 61 PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120
Query: 185 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KL 240
GM LGS +RV+ + D+ VI+ G G + R + LR+ I S SD KL
Sbjct: 121 GMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKL 180
Query: 241 KDRLAKLSGGYAVL 254
+RLAKL+GG AV+
Sbjct: 181 GERLAKLAGGVAVI 194
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising
Residues 191-376, Mutant With Ala 262 Replaced With Leu
And Ile 267 Replaced With Met
Length = 203
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 12/189 (6%)
Query: 70 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQS 125
+GM+ + G SPYF L+ +L+ D KISN IR+ LP + G+
Sbjct: 18 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKP 73
Query: 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 185
LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG V++ G
Sbjct: 74 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 133
Query: 186 MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLK 241
M LG KRV+ D II G GE IQ R Q+R I+ +TSD KL+
Sbjct: 134 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 193
Query: 242 DRLAKLSGG 250
+R+AKL+GG
Sbjct: 194 ERVAKLAGG 202
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel
From Xenorhapdus Nematophila
Length = 201
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 99/189 (52%), Gaps = 12/189 (6%)
Query: 70 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQS 125
+GM+ + G SPYF L+ +L+ D KISN IR+ LP + +
Sbjct: 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISN---IREL-LPVLEGVAKASKP 68
Query: 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 185
L+++AEDVE E L + + KV +KA G + RKA+++D+A LT G V++ G
Sbjct: 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIG 128
Query: 186 MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLK 241
+ LG KRV+ D II G GE I R Q+R I+ STSD KL+
Sbjct: 129 LELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYDREKLQ 188
Query: 242 DRLAKLSGG 250
+R+AKL+GG
Sbjct: 189 ERVAKLAGG 197
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345
Length = 155
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 8/159 (5%)
Query: 70 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQS 125
+GM+ + G SPYF L+ +L+ D KISN IR+ LP + G+
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKP 56
Query: 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 185
LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG V++ G
Sbjct: 57 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 116
Query: 186 MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQER 224
M LG KRV+ D II G GE IQ R
Sbjct: 117 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 155
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
Length = 146
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 70 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM----MQGQS 125
+GM+ + G SPYF L+ +L+ D KISN IR+ LP + G+
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN---IREM-LPVLEAVAKAGKP 56
Query: 126 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 185
LL++AEDVE E L + + KV +KA G + RKA+++D+A LTGG V++ G
Sbjct: 57 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 116
Query: 186 MNSTYFVPLKLGSCKRVIATMDNVVIIGG 214
M LG KRV+ D II G
Sbjct: 117 MELEKATLEDLGQAKRVVINKDTTTIIDG 145
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical
Domain) Comprising Residues 192-336
Length = 145
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 71 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQ----GQSL 126
G + + G SPYF T+ E VL+ A +LI + K+SN +R+ LP + Q G+ L
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSN---VREL-LPILEQVAQTGKPL 56
Query: 127 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM 186
L++AEDVE E L + + T V +KA G + RK +++D+A +TGG V++ G
Sbjct: 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGF 116
Query: 187 NSTYFVPLKLGSCKRVIATMDNVVIIGG 214
LG +RV T D I+GG
Sbjct: 117 KLENATLSMLGRAERVRITKDETTIVGG 144
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 271 ITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYL 328
+ +ALH V E+G +V G G + + S L + +T +++ V AL++
Sbjct: 342 LNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVA 401
Query: 329 IASNAGVDGSVIDKLLEQDSS------DLGYNPARGNYVDMFKCGDVDPLK 373
+A NAG+D ID ++E S + G N G VDM++ ++PL+
Sbjct: 402 LAENAGLDP--IDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLR 450
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 254 LKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ-TTNSDQ 311
L + G K + + K I + L AV+ A ++G +VPG+G + ++ L K + +
Sbjct: 366 LLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRA 425
Query: 312 KIGVQIVQNALKMAAYLIASNAGVD 336
++GVQ +AL + ++A N+G D
Sbjct: 426 QLGVQAFADALLIIPKVLAQNSGFD 450
>pdb|3ZUA|A Chain A, A C39-Like Domain
Length = 142
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 64 NELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 123
+ LNF+ L W +F K KE LI+D + N V+ Q+ + QG
Sbjct: 70 DRLNFISLPALVWREDGRHFILTKVSKEA----NRYLIFDLEQRNPRVLEQSEFEALYQG 125
Query: 124 QSLLVVAE 131
+L+ +
Sbjct: 126 HIILIASR 133
>pdb|2IWA|A Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya.
pdb|2FAW|A Chain A, Crystal Structure Of Papaya Glutaminyl Cyclase
pdb|2FAW|B Chain B, Crystal Structure Of Papaya Glutaminyl Cyclase
Length = 266
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 34 DGEIGE----LIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS 80
D GE L K+++ W ++ I+DR+ L N NF MK WGL +
Sbjct: 64 DSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLAT 114
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 271 ITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL-QTTNSDQKIGVQIVQNALKMAAYL 328
+ +A+ V+ E+G ++P G + + LD+ + + + ++ +ALK+
Sbjct: 391 LEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKT 450
Query: 329 IASNAGVDG-SVIDKLLEQDSSD---LGYNPARGNYVDMFKCGDVDPLK 373
+A NAG+D ++ K++ + + +G + G DM + G ++PL+
Sbjct: 451 LAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLR 499
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 271 ITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL-QTTNSDQKIGVQIVQNALKMAAYL 328
+ +A+ V+ E+G ++P G + + LD+ + + + ++ +ALK+
Sbjct: 391 LEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKT 450
Query: 329 IASNAGVDG-SVIDKLLEQDSSD---LGYNPARGNYVDMFKCGDVDPLK 373
+A NAG+D ++ K++ + + +G + G DM + G ++PL+
Sbjct: 451 LAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLR 499
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 271 ITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL-QTTNSDQKIGVQIVQNALKMAAYL 328
+ +A+ V+ E+G ++P G + + LD+ + + + ++ +ALK+
Sbjct: 391 LEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKT 450
Query: 329 IASNAGVDG-SVIDKLLEQDSSD---LGYNPARGNYVDMFKCGDVDPLK 373
+A NAG+D ++ K++ + + +G + G DM + G ++PL+
Sbjct: 451 LAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLR 499
>pdb|4AM9|A Chain A, Crystal Structure Of The Yersinia Enterocolitica Type Iii
Secretion Chaperone Sycd In Complex With A Peptide Of
The Translocator Yopd
Length = 148
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 158 AGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGE 217
+G ED + + L +L +S +F L LG+C++ + D + G
Sbjct: 34 SGKYEDAHKVFQALCVL---------DHYDSRFF--LGLGACRQAMGQYDLAIHSYSYGA 82
Query: 218 LVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHA 277
++DI+E R + K LA+ G + + K E +E ++++ L A
Sbjct: 83 VMDIKEP----RFPFHAAECLLQKGELAEAESGLFLAQELIANKPEFKELSTRVSSMLEA 138
Query: 278 VQAAKE 283
++ KE
Sbjct: 139 IKLKKE 144
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 52 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAG 111
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 112 GMESMSMAPHCAHLRGGVKM 131
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 52 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 111
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 112 GMESMSMAPHCAHLRGGVKM 131
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRV----------------------IATMDNVVIIGG 214
GQVL G G N +K G + IAT D +I+ G
Sbjct: 55 GQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAG 114
Query: 215 SGELVDIQERCEQLRSTIKL 234
E + + C LR +K+
Sbjct: 115 GMESMSMAPHCAHLRGGVKM 134
>pdb|2QM9|A Chain A, Troglitazone Bound To Fatty Acid Binding Protein 4
pdb|2QM9|B Chain B, Troglitazone Bound To Fatty Acid Binding Protein 4
pdb|2Q9S|A Chain A, Linoleic Acid Bound To Fatty Acid Binding Protein 4
Length = 155
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 214 GSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGK 261
G G + + C+ T KL +S+ D + ++ G+A KV G K
Sbjct: 14 GRGSSSKVYKMCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAK 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,863,895
Number of Sequences: 62578
Number of extensions: 438292
Number of successful extensions: 1340
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 67
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)