Query 016250
Match_columns 392
No_of_seqs 182 out of 532
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 3.9E-74 8.4E-79 592.0 22.6 241 70-326 255-524 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 3.4E-68 7.4E-73 510.4 19.2 210 82-316 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 1.5E-44 3.2E-49 321.7 13.8 124 125-260 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 3.6E-36 7.8E-41 280.3 16.6 192 101-325 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 2.2E-20 4.9E-25 170.4 11.7 167 102-293 4-187 (199)
6 smart00327 VWA von Willebrand 99.0 3.2E-09 7E-14 91.3 10.8 144 101-276 2-160 (177)
7 cd01461 vWA_interalpha_trypsin 98.9 1.2E-08 2.6E-13 88.8 11.9 141 101-272 3-150 (171)
8 cd00198 vWFA Von Willebrand fa 98.8 5.7E-08 1.2E-12 80.7 10.0 140 102-272 2-153 (161)
9 cd01464 vWA_subfamily VWA subf 98.8 3.9E-08 8.5E-13 87.9 9.2 144 100-272 3-159 (176)
10 cd01463 vWA_VGCC_like VWA Volt 98.7 1.4E-07 3E-12 85.5 12.1 141 101-271 14-176 (190)
11 cd01471 vWA_micronemal_protein 98.7 1.9E-07 4E-12 83.8 12.2 161 101-291 1-179 (186)
12 PF13519 VWA_2: von Willebrand 98.6 2.6E-07 5.6E-12 79.1 10.7 142 102-271 1-148 (172)
13 cd01465 vWA_subgroup VWA subgr 98.6 5.9E-07 1.3E-11 78.3 12.1 141 101-271 1-150 (170)
14 cd01466 vWA_C3HC4_type VWA C3H 98.6 5.6E-07 1.2E-11 79.4 10.7 137 101-271 1-144 (155)
15 cd01450 vWFA_subfamily_ECM Von 98.5 2.3E-07 4.9E-12 79.0 7.1 142 102-272 2-153 (161)
16 cd01454 vWA_norD_type norD typ 98.5 2.4E-06 5.2E-11 76.1 12.2 143 102-263 2-154 (174)
17 cd01456 vWA_ywmD_type VWA ywmD 98.4 1.1E-06 2.3E-11 80.7 9.7 147 101-270 21-188 (206)
18 cd01467 vWA_BatA_type VWA BatA 98.4 4.9E-06 1.1E-10 73.6 11.8 136 101-261 3-142 (180)
19 TIGR03788 marine_srt_targ mari 98.3 3.5E-06 7.6E-11 89.8 12.2 140 101-271 272-418 (596)
20 cd01472 vWA_collagen von Wille 98.3 5.5E-06 1.2E-10 72.8 11.3 136 101-272 1-151 (164)
21 cd01470 vWA_complement_factors 98.3 8E-06 1.7E-10 74.4 11.9 148 101-272 1-176 (198)
22 cd01482 vWA_collagen_alphaI-XI 98.3 1.2E-05 2.5E-10 71.3 11.9 136 102-272 2-151 (164)
23 cd01473 vWA_CTRP CTRP for CS 98.2 2.9E-05 6.2E-10 71.7 14.0 143 102-272 2-160 (192)
24 PF13768 VWA_3: von Willebrand 98.2 7.4E-06 1.6E-10 71.2 9.5 138 102-271 2-146 (155)
25 cd01462 VWA_YIEM_type VWA YIEM 98.1 2.8E-05 6E-10 67.5 11.1 128 102-262 2-135 (152)
26 cd01480 vWA_collagen_alpha_1-V 98.1 1.4E-05 2.9E-10 72.6 9.3 139 101-271 3-160 (186)
27 cd01476 VWA_integrin_invertebr 98.1 6.1E-05 1.3E-09 65.8 12.7 126 101-262 1-142 (163)
28 cd01453 vWA_transcription_fact 98.1 5.1E-05 1.1E-09 69.5 11.9 141 101-270 4-154 (183)
29 cd01474 vWA_ATR ATR (Anthrax T 98.0 1.9E-05 4.1E-10 71.4 8.5 142 101-272 5-155 (185)
30 cd01460 vWA_midasin VWA_Midasi 97.9 0.00011 2.5E-09 72.0 12.5 134 101-262 61-205 (266)
31 PTZ00441 sporozoite surface pr 97.9 0.00015 3.2E-09 77.8 14.2 133 101-262 43-189 (576)
32 PRK13685 hypothetical protein; 97.9 5.7E-05 1.2E-09 75.0 10.0 139 101-262 89-239 (326)
33 cd01451 vWA_Magnesium_chelatas 97.9 0.00022 4.8E-09 64.2 12.8 141 103-271 3-154 (178)
34 PF00092 VWA: von Willebrand f 97.8 0.00018 3.9E-09 62.4 10.7 142 102-271 1-153 (178)
35 cd01475 vWA_Matrilin VWA_Matri 97.8 0.00018 3.9E-09 67.2 11.3 136 101-271 3-155 (224)
36 PF09967 DUF2201: VWA-like dom 97.8 4.6E-05 9.9E-10 66.5 6.8 118 103-270 1-125 (126)
37 cd01477 vWA_F09G8-8_type VWA F 97.7 0.00052 1.1E-08 63.8 12.6 141 101-270 20-181 (193)
38 cd01469 vWA_integrins_alpha_su 97.7 0.00064 1.4E-08 61.3 11.9 129 101-262 1-143 (177)
39 PRK13406 bchD magnesium chelat 97.6 0.00082 1.8E-08 72.5 13.0 154 101-277 402-563 (584)
40 TIGR02031 BchD-ChlD magnesium 97.5 0.0014 3E-08 70.6 13.7 155 101-277 408-576 (589)
41 TIGR03436 acidobact_VWFA VWFA- 97.4 0.0038 8.3E-08 60.4 13.4 132 98-261 52-204 (296)
42 cd01452 VWA_26S_proteasome_sub 97.3 0.0047 1E-07 57.8 13.1 157 102-289 5-174 (187)
43 cd01455 vWA_F11C1-5a_type Von 97.3 0.0012 2.7E-08 62.1 8.9 148 102-271 2-162 (191)
44 cd01481 vWA_collagen_alpha3-VI 97.2 0.0049 1.1E-07 55.6 11.8 134 102-271 2-153 (165)
45 cd01458 vWA_ku Ku70/Ku80 N-ter 97.2 0.0083 1.8E-07 55.9 13.4 151 102-270 3-183 (218)
46 TIGR02442 Cob-chelat-sub cobal 97.2 0.005 1.1E-07 66.8 13.4 144 101-270 466-621 (633)
47 PF05762 VWA_CoxE: VWA domain 97.0 0.0052 1.1E-07 58.1 10.3 117 101-249 58-180 (222)
48 PRK10997 yieM hypothetical pro 96.5 0.045 9.8E-07 58.3 13.3 138 101-271 324-468 (487)
49 TIGR00868 hCaCC calcium-activa 96.3 0.027 5.8E-07 63.6 10.9 138 102-271 306-450 (863)
50 COG4245 TerY Uncharacterized p 95.0 0.3 6.4E-06 46.6 11.1 147 101-271 4-159 (207)
51 COG2425 Uncharacterized protei 94.3 0.41 9E-06 50.5 11.3 136 102-271 274-417 (437)
52 COG1240 ChlD Mg-chelatase subu 93.0 1.9 4.1E-05 42.9 12.6 141 96-263 74-224 (261)
53 PF11775 CobT_C: Cobalamin bio 89.8 4.5 9.7E-05 39.3 11.3 53 207-261 132-187 (219)
54 TIGR01651 CobT cobaltochelatas 84.1 7.8 0.00017 42.7 10.4 64 195-262 500-568 (600)
55 PF03731 Ku_N: Ku70/Ku80 N-ter 82.1 12 0.00025 34.7 9.6 139 103-260 2-173 (224)
56 COG4548 NorD Nitric oxide redu 82.0 3.3 7.2E-05 45.1 6.5 160 101-286 447-619 (637)
57 PF00113 Enolase_C: Enolase, C 67.5 18 0.0004 36.4 7.2 154 79-256 76-233 (295)
58 PF04131 NanE: Putative N-acet 67.1 41 0.00088 32.2 9.0 97 85-224 53-155 (192)
59 COG4867 Uncharacterized protei 65.6 46 0.001 35.9 9.8 138 102-261 465-611 (652)
60 COG3864 Uncharacterized protei 63.6 16 0.00034 37.8 5.8 108 101-261 262-374 (396)
61 TIGR00578 ku70 ATP-dependent D 62.1 1E+02 0.0022 33.8 12.1 153 102-271 12-194 (584)
62 CHL00200 trpA tryptophan synth 58.7 80 0.0017 31.2 9.7 153 87-268 32-218 (263)
63 KOG4465 Uncharacterized conser 58.5 94 0.002 33.0 10.4 137 101-268 428-570 (598)
64 TIGR00262 trpA tryptophan synt 58.2 94 0.002 30.4 10.0 155 87-270 27-216 (256)
65 PLN02591 tryptophan synthase 52.0 1E+02 0.0022 30.3 9.2 155 86-270 18-207 (250)
66 PLN00191 enolase 51.2 1.4E+02 0.0031 31.9 10.8 150 80-256 240-393 (457)
67 KOG2353 L-type voltage-depende 49.4 1.3E+02 0.0029 35.7 10.9 138 101-268 226-382 (1104)
68 PF02601 Exonuc_VII_L: Exonucl 47.0 95 0.0021 30.7 8.2 86 169-267 26-123 (319)
69 PF07466 DUF1517: Protein of u 45.6 34 0.00073 34.4 4.8 24 158-181 156-179 (289)
70 COG1488 PncB Nicotinic acid ph 45.3 84 0.0018 33.1 7.8 74 170-262 248-325 (405)
71 PF06415 iPGM_N: BPG-independe 45.0 44 0.00095 32.6 5.3 57 194-261 13-72 (223)
72 PF02601 Exonuc_VII_L: Exonucl 44.6 72 0.0016 31.5 7.0 67 194-273 25-97 (319)
73 cd03313 enolase Enolase: Enola 44.6 1.7E+02 0.0036 30.6 9.9 65 81-151 211-278 (408)
74 PRK15458 tagatose 6-phosphate 44.2 2.6E+02 0.0057 30.0 11.2 68 194-265 27-98 (426)
75 TIGR02810 agaZ_gatZ D-tagatose 41.5 3E+02 0.0066 29.5 11.2 68 194-265 23-94 (420)
76 COG3010 NanE Putative N-acetyl 41.4 83 0.0018 30.9 6.5 75 85-195 87-163 (229)
77 COG3552 CoxE Protein containin 41.1 1.7E+02 0.0037 31.0 9.2 99 102-224 220-325 (395)
78 COG4573 GatZ Predicted tagatos 40.8 1.7E+02 0.0037 30.8 9.0 108 194-340 27-141 (426)
79 PF04811 Sec23_trunk: Sec23/Se 40.1 2.3E+02 0.005 26.8 9.4 149 102-270 5-212 (243)
80 TIGR02836 spore_IV_A stage IV 39.6 30 0.00065 37.3 3.5 90 212-313 146-237 (492)
81 PTZ00081 enolase; Provisional 38.4 3.4E+02 0.0074 28.9 11.1 149 81-256 226-381 (439)
82 PRK00286 xseA exodeoxyribonucl 37.3 84 0.0018 32.7 6.4 35 238-272 179-213 (438)
83 PRK15052 D-tagatose-1,6-bispho 36.6 4E+02 0.0086 28.6 11.1 70 194-267 24-97 (421)
84 PRK13111 trpA tryptophan synth 36.1 3.5E+02 0.0075 26.7 10.1 73 183-269 144-217 (258)
85 COG4822 CbiK Cobalamin biosynt 34.9 1.2E+02 0.0027 30.1 6.6 169 82-262 58-242 (265)
86 PF08013 Tagatose_6_P_K: Tagat 34.6 2.6E+02 0.0055 30.0 9.3 92 171-265 4-98 (424)
87 PRK00035 hemH ferrochelatase; 34.3 2.1E+02 0.0046 28.6 8.5 166 136-322 107-293 (333)
88 COG0167 PyrD Dihydroorotate de 31.8 3.7E+02 0.0079 27.6 9.7 116 73-208 162-296 (310)
89 TIGR00696 wecB_tagA_cpsF bacte 31.5 3.9E+02 0.0085 24.8 9.2 9 156-164 49-57 (177)
90 TIGR00237 xseA exodeoxyribonuc 31.4 1.2E+02 0.0026 31.9 6.5 36 237-272 172-208 (432)
91 cd08550 GlyDH-like Glycerol_de 30.6 1.1E+02 0.0024 30.8 5.8 13 139-151 10-22 (349)
92 PF11443 DUF2828: Domain of un 30.2 6.7E+02 0.015 27.7 11.9 108 90-224 331-450 (534)
93 TIGR01302 IMP_dehydrog inosine 29.7 5.3E+02 0.012 27.2 10.9 99 85-224 225-338 (450)
94 smart00187 INB Integrin beta s 29.4 85 0.0019 33.5 4.9 105 101-224 100-243 (423)
95 cd02940 DHPD_FMN Dihydropyrimi 29.3 3.9E+02 0.0085 26.4 9.3 111 74-198 170-297 (299)
96 PRK00077 eno enolase; Provisio 28.9 5.4E+02 0.012 27.0 10.7 144 81-256 214-361 (425)
97 cd01567 NAPRTase_PncB Nicotina 27.4 2.8E+02 0.0061 28.0 8.1 76 170-262 247-328 (343)
98 KOG2807 RNA polymerase II tran 26.9 2.5E+02 0.0055 29.4 7.5 138 95-261 56-203 (378)
99 TIGR02493 PFLA pyruvate format 25.9 3.7E+02 0.0081 24.9 8.1 37 184-223 68-106 (235)
100 PRK00414 gmhA phosphoheptose i 25.9 1.8E+02 0.0039 27.0 5.9 27 135-164 29-55 (192)
101 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.1 6.6E+02 0.014 24.6 12.4 113 88-222 25-145 (275)
102 PF04055 Radical_SAM: Radical 25.0 2.6E+02 0.0057 23.0 6.4 53 190-259 56-108 (166)
103 COG5583 Uncharacterized small 24.0 1.3E+02 0.0028 23.5 3.7 32 191-224 5-37 (54)
104 cd08195 DHQS Dehydroquinate sy 23.8 2.8E+02 0.006 27.9 7.3 37 186-223 29-65 (345)
105 KOG1202 Animal-type fatty acid 23.2 71 0.0015 38.8 3.2 70 153-224 2145-2221(2376)
106 COG0148 Eno Enolase [Carbohydr 22.3 9.3E+02 0.02 25.9 10.8 147 79-258 211-362 (423)
107 COG5271 MDN1 AAA ATPase contai 22.0 5.6E+02 0.012 33.6 9.9 134 101-261 4393-4534(4600)
108 PRK05434 phosphoglyceromutase; 21.6 2.7E+02 0.0058 30.4 7.0 31 194-224 95-125 (507)
109 TIGR00337 PyrG CTP synthase. C 21.5 82 0.0018 34.5 3.2 107 70-194 292-405 (525)
110 TIGR01307 pgm_bpd_ind 2,3-bisp 21.4 2.7E+02 0.0059 30.3 7.0 30 194-223 91-120 (501)
111 COG1436 NtpG Archaeal/vacuolar 21.3 1.2E+02 0.0027 26.2 3.6 58 196-268 34-91 (104)
112 cd08171 GlyDH-like2 Glycerol d 21.1 3.4E+02 0.0075 27.2 7.3 13 139-151 10-22 (345)
113 PRK08195 4-hyroxy-2-oxovalerat 21.1 8.9E+02 0.019 24.7 14.7 129 87-253 28-159 (337)
114 COG0159 TrpA Tryptophan syntha 20.7 8.1E+02 0.017 24.7 9.6 159 82-269 29-222 (265)
115 cd05013 SIS_RpiR RpiR-like pro 20.7 2.8E+02 0.006 22.6 5.6 44 212-271 62-105 (139)
116 KOG2943 Predicted glyoxalase [ 20.6 40 0.00087 33.8 0.6 95 146-273 175-282 (299)
117 PF00532 Peripla_BP_1: Peripla 20.5 2.5E+02 0.0055 27.1 6.0 59 192-268 15-73 (279)
118 PRK09271 flavodoxin; Provision 20.3 2.2E+02 0.0048 25.3 5.2 32 234-265 68-99 (160)
119 KOG1552 Predicted alpha/beta h 20.1 2.1E+02 0.0046 28.7 5.4 64 87-162 74-138 (258)
120 PRK09198 putative nicotinate p 20.1 3.9E+02 0.0083 28.9 7.7 64 184-262 291-367 (463)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-74 Score=592.01 Aligned_cols=241 Identities=48% Similarity=0.727 Sum_probs=228.3
Q ss_pred cccccccccccccccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCC-CCCHHHHHHHHHhhccc
Q 016250 70 RKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLA 148 (392)
Q Consensus 70 ~~~~~~~~~i~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~-~~N~YqqAI~~Ig~vl~ 148 (392)
++.+.+++.+.+.|+++++++.++..+|++++||+||||||+||+|++. +.||||+++ .+|+||+||++||++|+
T Consensus 255 k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~----~sSLHyi~p~~~N~Y~~Ai~~vG~~lq 330 (529)
T KOG1327|consen 255 KSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRN----PSSLHYIDPHQPNPYEQAIRSVGETLQ 330 (529)
T ss_pred hcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCC----CCcceecCCCCCCHHHHHHHHHhhhhc
Confidence 4567789999999999999999999999999999999999999999875 459999995 78999999999999999
Q ss_pred ccCCCCccceeecCCC------------------CCCcCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--
Q 016250 149 VFDEDNLIPCYGFGDG------------------GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG-- 208 (392)
Q Consensus 149 ~yDdD~~ipvfGFGa~------------------~~~c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~-- 208 (392)
.||.|++||||||||+ +++|+|++|||+||++++|+|+|+|||+|+|||++|+++++++.
T Consensus 331 ~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~ 410 (529)
T KOG1327|consen 331 DYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNT 410 (529)
T ss_pred ccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccC
Confidence 9999999999999999 57899999999999999999999999999999999999999986
Q ss_pred -CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCcccccccCCCCCC-------cccc
Q 016250 209 -GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPA-------RAFD 280 (392)
Q Consensus 209 -~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~LDd~l~~-------R~~D 280 (392)
++||||||||||+||| |++|++|||.||++|||||||||||+||++|++||++.+. |.||
T Consensus 411 ~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD 478 (529)
T KOG1327|consen 411 AGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERD 478 (529)
T ss_pred CcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCccccccccccccc
Confidence 8999999999999998 8999999999999999999999999999999999998876 7899
Q ss_pred ceecccchhhccccCCcchhHHHHHHHHHHHhHHHHHHHHHhcccC
Q 016250 281 NFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILG 326 (392)
Q Consensus 281 NvqFV~f~di~~kn~~~~~~d~~lA~~aL~EIP~Ql~ay~~lgiL~ 326 (392)
|||||+|+|||.++.+.+.++++||+++|+|||+||++||+++.|.
T Consensus 479 ~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~ 524 (529)
T KOG1327|consen 479 NVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGIL 524 (529)
T ss_pred ceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 9999999999998877888999999999999999999999995444
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=3.4e-68 Score=510.36 Aligned_cols=210 Identities=55% Similarity=0.882 Sum_probs=193.9
Q ss_pred cccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCC-CCCHHHHHHHHHhhcccccCCCCccceee
Q 016250 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYG 160 (392)
Q Consensus 82 ~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~-~~N~YqqAI~~Ig~vl~~yDdD~~ipvfG 160 (392)
.|+||||+ ++|+| +||+||||||+||+|+++ ++||||++. .+|+||+||++||+||+.||+|++|||||
T Consensus 19 ~~tFldy~-----~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYR-----SAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHH-----hCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 89999999 89999 599999999999999865 589999976 57999999999999999999999999999
Q ss_pred cCCC----------------CCCcCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCcc
Q 016250 161 FGDG----------------GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQV 222 (392)
Q Consensus 161 FGa~----------------~~~c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~--~Y~VLLIITDG~I 222 (392)
||++ +++|.|++|||++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 9997 248999999999999999999999999999999999999987643 4999999999999
Q ss_pred ccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCcccccccCC-------CCCCccccceecccchhhccccC
Q 016250 223 TRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD-------NIPARAFDNFQFVNFTEIMSKNH 295 (392)
Q Consensus 223 td~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~LDd-------~l~~R~~DNvqFV~f~di~~kn~ 295 (392)
+| +++|+++|++||++||||||||||+++|+.|++||+ +++.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 97 899999999999999999999999999999999997 4677899999999999997431
Q ss_pred CcchhHHHHHHHHHHHhHHHH
Q 016250 296 DQTRKETEFALSALMEIPSQY 316 (392)
Q Consensus 296 ~~~~~d~~lA~~aL~EIP~Ql 316 (392)
..++++||+++|+|||+||
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1357899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=1.5e-44 Score=321.74 Aligned_cols=124 Identities=52% Similarity=0.947 Sum_probs=119.0
Q ss_pred CccccCC-CCCHHHHHHHHHhhcccccCCCCccceeecCCC------------------CCCcCCHHHHHHHHHhhcCce
Q 016250 125 SLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG------------------GRFCYGFEEVLSRYREIVPNL 185 (392)
Q Consensus 125 SLH~i~~-~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~------------------~~~c~G~egVL~aYr~~l~~v 185 (392)
||||+++ .+|+||+||++||++|+.||+|++||||||||+ +++|.|++|||++|++++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 7999998 489999999999999999999999999999998 478999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHHh---cCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecc
Q 016250 186 KLAGPTSFAPVIEMAMSIVEQ---SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVG 260 (392)
Q Consensus 186 ~LsGPT~FaPVI~~ai~ive~---s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVG 260 (392)
+|+|||+|+|||++|++++++ .+.+|+||||||||+|+| +++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999997 899999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=100.00 E-value=3.6e-36 Score=280.26 Aligned_cols=192 Identities=24% Similarity=0.338 Sum_probs=163.9
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC-----CCCcCCHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG-----GRFCYGFEEVL 175 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~-----~~~c~G~egVL 175 (392)
.++.++||.|+||. .++..| ..|++++++..++.+||+|+.|+||.|+.+ +-...++++++
T Consensus 2 ArV~LVLD~SGSM~----------~~yk~G----~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~vt~~~~~~~v 67 (200)
T PF10138_consen 2 ARVYLVLDISGSMR----------PLYKDG----TVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDVTLDNYEGYV 67 (200)
T ss_pred cEEEEEEeCCCCCc----------hhhhCc----cHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCcCHHHHHHHH
Confidence 46899999999995 344433 479999999999999999999999999998 23345678877
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhc-CCc-cEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcE
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-GGQ-YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 253 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s-~~~-Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLS 253 (392)
+.....++.+...|.|+++|||++|++++.++ +.. ...+||||||++++ .+++.++|++||++||+
T Consensus 68 ~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~~as~~pif 135 (200)
T PF10138_consen 68 DELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIREASDEPIF 135 (200)
T ss_pred HHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHHhccCCCee
Confidence 55444444445557799999999999998754 333 45568999999987 78999999999999999
Q ss_pred EEEEecccCCcccccccCCCCCCccccceecccchhhccccCCcchhHHHHHHHHHHHhHHHHHHHHHhccc
Q 016250 254 IVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNIL 325 (392)
Q Consensus 254 II~VGVGdg~F~~M~~LDd~l~~R~~DNvqFV~f~di~~kn~~~~~~d~~lA~~aL~EIP~Ql~ay~~lgiL 325 (392)
|+|||||+.+|++|++||+ |.+|.+||+.||.+.++.. ++|++|++++|.|+|.|+++++++|||
T Consensus 136 wqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~~------lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 136 WQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDIDE------LSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred EEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCccc------CCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999997 9999999999999999853 579999999999999999999999986
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.83 E-value=2.2e-20 Score=170.42 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=128.2
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCC--CcCCHHHHHHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGR--FCYGFEEVLSRYR 179 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~--~c~G~egVL~aYr 179 (392)
.++++||.|+||.+.. .+.++|. .+.+++++.+|+.++..||.|+...+|+|+.... .+. .+++.+.+.
T Consensus 4 dvv~~ID~SgSM~~~~----~~~~~~k----~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~~~-~~~v~~~~~ 74 (199)
T cd01457 4 DYTLLIDKSGSMAEAD----EAKERSR----WEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDNVN-SSKVDQLFA 74 (199)
T ss_pred CEEEEEECCCcCCCCC----CCCCchH----HHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCCcC-HHHHHHHHh
Confidence 6899999999998532 1123332 4778999999999999999999877777776522 222 666666665
Q ss_pred hhcCceeecCCCChHHHHHHHHHHHHhc--C---C-ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC---
Q 016250 180 EIVPNLKLAGPTSFAPVIEMAMSIVEQS--G---G-QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL--- 250 (392)
Q Consensus 180 ~~l~~v~LsGPT~FaPVI~~ai~ive~s--~---~-~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l--- 250 (392)
+. ...|+|++.++|+.+++.+.+. . . .+.++||||||..++ .+++.++|++|++.
T Consensus 75 ~~----~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~~i~~a~~~l~~ 138 (199)
T cd01457 75 EN----SPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVERVIIKASDELDA 138 (199)
T ss_pred cC----CCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHHHHHHHHHhhcc
Confidence 43 3469999999999998543221 1 1 278889999999876 67888999999874
Q ss_pred --CcEEEEEecccC--CcccccccCCCC--CCccccceecccchhhccc
Q 016250 251 --PLSIVLVGVGDG--PWDMMKEFDDNI--PARAFDNFQFVNFTEIMSK 293 (392)
Q Consensus 251 --PLSII~VGVGdg--~F~~M~~LDd~l--~~R~~DNvqFV~f~di~~k 293 (392)
+|.|.|||||++ .+..|++||+.+ .++.||||+||+|+++...
T Consensus 139 ~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~~ 187 (199)
T cd01457 139 DNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMERL 187 (199)
T ss_pred ccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhcC
Confidence 899999999985 899999999753 4578999999999998653
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.00 E-value=3.2e-09 Score=91.26 Aligned_cols=144 Identities=18% Similarity=0.266 Sum_probs=106.7
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCC----CCC--cCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDG----GRF--CYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~----~~~--c~G~ 171 (392)
.++++.||.|.||.. .....+...+..++..+. ++..|-+++|++. .+. +.+.
T Consensus 2 ~~v~l~vD~S~SM~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~~~~~~ 63 (177)
T smart00327 2 LDVVFLLDGSGSMGP------------------NRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSK 63 (177)
T ss_pred ccEEEEEeCCCccch------------------HHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEcccccCCH
Confidence 478999999999941 123444444444444444 4889999999988 223 6788
Q ss_pred HHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc--CC---ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GG---QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 246 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s--~~---~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~ 246 (392)
+.+++......+. ..|.|++...|+.+++.+++. .. ...+|+|||||...+. +.+.+++.+
T Consensus 64 ~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~~~~~~~~ 129 (177)
T smart00327 64 DALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GDLLKAAKE 129 (177)
T ss_pred HHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------ccHHHHHHH
Confidence 8888877766543 578899999999999887521 11 2578899999998751 456777777
Q ss_pred hcCCCcEEEEEecccC-CcccccccCCCCCC
Q 016250 247 ASELPLSIVLVGVGDG-PWDMMKEFDDNIPA 276 (392)
Q Consensus 247 AS~lPLSII~VGVGdg-~F~~M~~LDd~l~~ 276 (392)
+.+..+.|++||+|+. +.+.|+.|.....+
T Consensus 130 ~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 130 LKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred HHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 7788899999999998 89999999864443
No 7
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.93 E-value=1.2e-08 Score=88.78 Aligned_cols=141 Identities=20% Similarity=0.273 Sum_probs=101.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC----C--CcCCHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG----R--FCYGFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~----~--~c~G~egV 174 (392)
.++++.+|.|+||.. ...+.|...+..++..+..+..|-+++|+... + .+.+.+.+
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~ 64 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENV 64 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHH
Confidence 489999999999951 12466777777777888777789999999871 1 12232222
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 254 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSI 254 (392)
+...+.+..+...|-|++...|+.+.+..+.....--++|+||||...+ .+++.+++.++.+..+-|
T Consensus 65 -~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~~~~~i~i 131 (171)
T cd01461 65 -AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREALSGRIRL 131 (171)
T ss_pred -HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHhcCCCceE
Confidence 2233444555668999999999999988765333446789999999654 456778888887778999
Q ss_pred EEEeccc-CCcccccccCC
Q 016250 255 VLVGVGD-GPWDMMKEFDD 272 (392)
Q Consensus 255 I~VGVGd-g~F~~M~~LDd 272 (392)
..||+|. .+...|+.+-+
T Consensus 132 ~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 132 FTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred EEEEeCCccCHHHHHHHHH
Confidence 9999996 46677777653
No 8
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.77 E-value=5.7e-08 Score=80.67 Aligned_cols=140 Identities=16% Similarity=0.326 Sum_probs=95.9
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceeecCCCCCC------cCCHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDGGRF------CYGFE 172 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---D~~ipvfGFGa~~~~------c~G~e 172 (392)
+++++||.|+|+.. ...+++...+..++..+.. ...+-+++|+..... +.+.+
T Consensus 2 ~v~~viD~S~Sm~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~ 63 (161)
T cd00198 2 DIVFLLDVSGSMGG------------------EKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKA 63 (161)
T ss_pred cEEEEEeCCCCcCc------------------chHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHH
Confidence 68999999999831 2235555555555555554 788999999976211 12344
Q ss_pred HHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC
Q 016250 173 EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 173 gVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s--~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
.+.+.-.... . ...|.|.+...++.+.+...+. .....+|++||||..++. .....+.+..+...
T Consensus 64 ~~~~~~~~~~-~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~~~~~~~~ 130 (161)
T cd00198 64 DLLEAIDALK-K-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEAARELRKL 130 (161)
T ss_pred HHHHHHHhcc-c-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHHHHHHHHc
Confidence 4444322221 1 3779999999999999998764 456788999999987652 12444556666677
Q ss_pred CcEEEEEeccc-CCcccccccCC
Q 016250 251 PLSIVLVGVGD-GPWDMMKEFDD 272 (392)
Q Consensus 251 PLSII~VGVGd-g~F~~M~~LDd 272 (392)
.+.|.+||+|+ .+-..|+.|+.
T Consensus 131 ~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 131 GITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhc
Confidence 99999999998 66777777764
No 9
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.75 E-value=3.9e-08 Score=87.90 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=95.5
Q ss_pred eeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCCCCCcCCHHHHHH
Q 016250 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDGGRFCYGFEEVLS 176 (392)
Q Consensus 100 s~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~~~c~G~egVL~ 176 (392)
.+++++.||.|+||... .+ ..-.+|+..+...+...+ ++..+-++.|+..-.....+..+.+
T Consensus 3 ~~~v~~llD~SgSM~~~--------~~-------~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~~~~ 67 (176)
T cd01464 3 RLPIYLLLDTSGSMAGE--------PI-------EALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPLES 67 (176)
T ss_pred CCCEEEEEECCCCCCCh--------HH-------HHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCccHHh
Confidence 36789999999999521 11 123556666655554422 3457999999986211111211111
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhcCCc---------cEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQ---------YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 247 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~---------Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~A 247 (392)
.....+...|-|++...|+++.+..+..... -.++|+||||..++. .....+++.++
T Consensus 68 ---~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~-----------~~~~~~~~~~~ 133 (176)
T cd01464 68 ---FQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDD-----------LTAAIERIKEA 133 (176)
T ss_pred ---cCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCch-----------HHHHHHHHHhh
Confidence 2245667789999999999999886542111 246799999987752 33445778887
Q ss_pred cCCCcEEEEEeccc-CCcccccccCC
Q 016250 248 SELPLSIVLVGVGD-GPWDMMKEFDD 272 (392)
Q Consensus 248 S~lPLSII~VGVGd-g~F~~M~~LDd 272 (392)
-...+-|..||||. .+.+.|++|-+
T Consensus 134 ~~~~~~i~~igiG~~~~~~~L~~ia~ 159 (176)
T cd01464 134 RDSKGRIVACAVGPKADLDTLKQITE 159 (176)
T ss_pred cccCCcEEEEEeccccCHHHHHHHHC
Confidence 77789999999995 67888888864
No 10
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.73 E-value=1.4e-07 Score=85.54 Aligned_cols=141 Identities=15% Similarity=0.247 Sum_probs=95.9
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC---CCcCCH------
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG---RFCYGF------ 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~---~~c~G~------ 171 (392)
.++++.||.|+||.. +..+.|-..+..++..+..+..|-++.|+... ..|...
T Consensus 14 ~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~ 75 (190)
T cd01463 14 KDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQAT 75 (190)
T ss_pred ceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecC
Confidence 689999999999951 12455555666667777777799999999871 122211
Q ss_pred HHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHh---c------CCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ---S------GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 242 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~---s------~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tid 242 (392)
.+=.+...+.+..++..|.|++...|+.+.+..++ . ...-.++++||||..++ ..+.++
T Consensus 76 ~~~~~~~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~ 143 (190)
T cd01463 76 TSNKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN------------YKEIFD 143 (190)
T ss_pred HHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc------------HhHHHH
Confidence 11223333445667788999999999999987765 1 11235789999998764 344455
Q ss_pred HHHHh--cCCCcEEEEEecccC--CcccccccC
Q 016250 243 AIVKA--SELPLSIVLVGVGDG--PWDMMKEFD 271 (392)
Q Consensus 243 aIv~A--S~lPLSII~VGVGdg--~F~~M~~LD 271 (392)
++... .+.++-|..||||.. +...|+.|-
T Consensus 144 ~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 144 KYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred HhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 54422 235899999999975 677887774
No 11
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.71 E-value=1.9e-07 Score=83.79 Aligned_cols=161 Identities=12% Similarity=0.157 Sum_probs=104.0
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCCCCC----c----C
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDGGRF----C----Y 169 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~~~----c----~ 169 (392)
+++++.||-|+|++.. |-+.++...+..+++.+. ++-.+-++.|+..... . .
T Consensus 1 ~Dv~~vlD~SgSm~~~-----------------~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~ 63 (186)
T cd01471 1 LDLYLLVDGSGSIGYS-----------------NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNST 63 (186)
T ss_pred CcEEEEEeCCCCccch-----------------hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCcccc
Confidence 3689999999999621 114556666666666663 4558899999987211 1 1
Q ss_pred CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 170 GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 170 G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
..+.+++.-+.+.......|.|+++..|+.|.+...+. ...-.+++|||||..++ ..+++++..
T Consensus 64 ~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~~~~a~ 131 (186)
T cd01471 64 NKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRTLKEAR 131 (186)
T ss_pred chHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------CcchhHHHH
Confidence 23332223333333345678999999999999887652 12235779999998764 123444555
Q ss_pred HhcCCCcEEEEEeccc-CCcccccccCCCCCCc--cccceecccchhhc
Q 016250 246 KASELPLSIVLVGVGD-GPWDMMKEFDDNIPAR--AFDNFQFVNFTEIM 291 (392)
Q Consensus 246 ~AS~lPLSII~VGVGd-g~F~~M~~LDd~l~~R--~~DNvqFV~f~di~ 291 (392)
++-+..+-|.+||||. .+.+.|+.|-+ .+.. ..++.-+..|+++.
T Consensus 132 ~l~~~gv~v~~igiG~~~d~~~l~~ia~-~~~~~~~~~~~~~~~~~~~~ 179 (186)
T cd01471 132 KLRERGVIIAVLGVGQGVNHEENRSLVG-CDPDDSPCPLYLQSSWSEVQ 179 (186)
T ss_pred HHHHCCCEEEEEEeehhhCHHHHHHhcC-CCCCCCCCCeeecCCHHHHH
Confidence 5556789999999997 47788888764 2222 24666666776664
No 12
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.65 E-value=2.6e-07 Score=79.06 Aligned_cols=142 Identities=16% Similarity=0.263 Sum_probs=99.3
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----CCCcCCHHHHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG----GRFCYGFEEVLSR 177 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~----~~~c~G~egVL~a 177 (392)
+++|+||.|+||.+.+ ...+..++|...+..++..+..+ .|-++.|+.. -+.+.+.+.+.++
T Consensus 1 dvv~v~D~SgSM~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~~~~~~t~~~~~~~~~ 66 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYD-------------GNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSRTLSPLTSDKDELKNA 66 (172)
T ss_dssp EEEEEEE-SGGGGTTT-------------SSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCEEEEEEESSHHHHHHH
T ss_pred CEEEEEECCcccCCCC-------------CCCcHHHHHHHHHHHHHHHCCCC-EEEEEEecccccccccccccHHHHHHH
Confidence 5899999999997421 12456788888888889888755 9999999986 2345788888888
Q ss_pred HHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEE
Q 016250 178 YREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLV 257 (392)
Q Consensus 178 Yr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~V 257 (392)
.++..+.....|.|.+...|+.+.++.......=-++|+||||.-+. ...+++..+.+..+.|.+|
T Consensus 67 l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~~~~i~i~~v 132 (172)
T PF13519_consen 67 LNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALKQQGITIYTV 132 (172)
T ss_dssp HHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHHCTTEEEEEE
T ss_pred hhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHHHcCCeEEEE
Confidence 77777666678999999999999999887653335568899997553 2234666677889999999
Q ss_pred ecccCCc--ccccccC
Q 016250 258 GVGDGPW--DMMKEFD 271 (392)
Q Consensus 258 GVGdg~F--~~M~~LD 271 (392)
|+|...- +.|++|-
T Consensus 133 ~~~~~~~~~~~l~~la 148 (172)
T PF13519_consen 133 GIGSDSDANEFLQRLA 148 (172)
T ss_dssp EES-TT-EHHHHHHHH
T ss_pred EECCCccHHHHHHHHH
Confidence 9998654 3455443
No 13
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.61 E-value=5.9e-07 Score=78.29 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=95.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCC---c---CCHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRF---C---YGFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~---c---~G~egV 174 (392)
+++++.+|.|+||.. ...+.|...+..++..+..+..+-++.|+..... . ...+.+
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~~~~~~l 62 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPVRDKAAI 62 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCcccchHHHH
Confidence 479999999999951 0146666677777788877779999999987211 1 122333
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCc
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPL 252 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPL 252 (392)
+ +.+.+++..|.|++...++.+.+.+++.. ..--.+++||||..++.. .+.+...+++.++-+..+
T Consensus 63 ~----~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~~~~~~~v 130 (170)
T cd01465 63 L----AAIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVAQKRESGI 130 (170)
T ss_pred H----HHHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHHHhhcCCe
Confidence 3 33445566889999999999998887542 222557899999865411 123455566666667788
Q ss_pred EEEEEecccC-CcccccccC
Q 016250 253 SIVLVGVGDG-PWDMMKEFD 271 (392)
Q Consensus 253 SII~VGVGdg-~F~~M~~LD 271 (392)
-|..||||.. +...|+++=
T Consensus 131 ~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 131 TLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred EEEEEEeCCCcCHHHHHHHH
Confidence 9999999943 455566554
No 14
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.56 E-value=5.6e-07 Score=79.36 Aligned_cols=137 Identities=12% Similarity=0.230 Sum_probs=90.8
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCcC---CH-HHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCY---GF-EEVLS 176 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c~---G~-egVL~ 176 (392)
+++++.||.|+||.. +..+.|-..+..++..+.++..+-++.|+....... -+ +.-.+
T Consensus 1 ~~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~~~~~~~~~~ 62 (155)
T cd01466 1 VDLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLRRMTAKGKR 62 (155)
T ss_pred CcEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCCcccCHHHHH
Confidence 368899999999951 123445555555565665666799999998611111 11 11122
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 254 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSI 254 (392)
..++.+..+...|-|+....|+.+.+..++.. +.-.++++||||..++ . .++.++.+.++-|
T Consensus 63 ~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~~~~~~v~v 126 (155)
T cd01466 63 SAKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLRADNAPIPI 126 (155)
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhcccCCCceE
Confidence 33444555677899999999999999876542 2346789999998653 1 2234455689999
Q ss_pred EEEecc-cCCcccccccC
Q 016250 255 VLVGVG-DGPWDMMKEFD 271 (392)
Q Consensus 255 I~VGVG-dg~F~~M~~LD 271 (392)
..||+| +.+.+.|++|-
T Consensus 127 ~~igig~~~~~~~l~~iA 144 (155)
T cd01466 127 HTFGLGASHDPALLAFIA 144 (155)
T ss_pred EEEecCCCCCHHHHHHHH
Confidence 999999 45667777764
No 15
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.53 E-value=2.3e-07 Score=79.00 Aligned_cols=142 Identities=14% Similarity=0.205 Sum_probs=94.5
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCC---c-C--CHHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRF---C-Y--GFEEVL 175 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~---c-~--G~egVL 175 (392)
++++.+|.|+|+... .. ....+++..+...+...+.+-.+-++.|++.... + . ..++++
T Consensus 2 di~~llD~S~Sm~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~~~~~~~ 66 (161)
T cd01450 2 DIVFLLDGSESVGPE-----------NF----EKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLL 66 (161)
T ss_pred cEEEEEeCCCCcCHH-----------HH----HHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCCCHHHHH
Confidence 688999999999520 11 1124445555555555556889999999987211 1 1 255555
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP 251 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~----~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP 251 (392)
+........ ..|-|++...|+.+.+...+.. ..-.++++||||..++. .+..+++.+..+..
T Consensus 67 ~~i~~~~~~--~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~~~~~~~~~~~ 132 (161)
T cd01450 67 KAVKNLKYL--GGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPKEAAAKLKDEG 132 (161)
T ss_pred HHHHhcccC--CCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchHHHHHHHHHCC
Confidence 544432211 1147999999999999877653 45678899999987751 13444555555668
Q ss_pred cEEEEEecccCCcccccccCC
Q 016250 252 LSIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 252 LSII~VGVGdg~F~~M~~LDd 272 (392)
+-|++||||..+.+.|++|-+
T Consensus 133 v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 133 IKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CEEEEEeccccCHHHHHHHhC
Confidence 999999999988888888753
No 16
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.46 E-value=2.4e-06 Score=76.12 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=91.6
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC-CCccceeecCCCC---CCc-----CCHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE-DNLIPCYGFGDGG---RFC-----YGFE 172 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd-D~~ipvfGFGa~~---~~c-----~G~e 172 (392)
.+.+.||.|+||... +..+.|-..+..++..... +-.+-+|+|+... ..+ ..++
T Consensus 2 ~v~~llD~SgSM~~~-----------------~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRSD-----------------RRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCCC-----------------cHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 578999999999621 2234444444443444432 5578999998651 111 1232
Q ss_pred HH-HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC
Q 016250 173 EV-LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP 251 (392)
Q Consensus 173 gV-L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP 251 (392)
+. ..+.++.+..+...|.|.+...|+.+.+...+....--++++||||..++. ++..+.+. ..++.++++.+|-+..
T Consensus 65 ~~~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~g 142 (174)
T cd01454 65 ESLHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVIEARKLG 142 (174)
T ss_pred cccchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHHHHHhCC
Confidence 22 223344444566678899999999999988765444567899999988753 22222221 2345566688888889
Q ss_pred cEEEEEecccCC
Q 016250 252 LSIVLVGVGDGP 263 (392)
Q Consensus 252 LSII~VGVGdg~ 263 (392)
+.+..||||...
T Consensus 143 i~v~~igig~~~ 154 (174)
T cd01454 143 IEVFGITIDRDA 154 (174)
T ss_pred cEEEEEEecCcc
Confidence 999999999865
No 17
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.44 E-value=1.1e-06 Score=80.73 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=93.6
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC----------CCc--
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG----------RFC-- 168 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~----------~~c-- 168 (392)
.+++|.||.|+||... -....+..+.|...+..++..+.++..|-+|.|+..- +.|
T Consensus 21 ~~vv~vlD~SgSM~~~------------~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREV------------DGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCC------------CCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 5899999999999631 0012345566766677777778778899999999841 111
Q ss_pred ----CCHH-HHHHHHHhhcCcee-ecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 016250 169 ----YGFE-EVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 242 (392)
Q Consensus 169 ----~G~e-gVL~aYr~~l~~v~-LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tid 242 (392)
.++. .-.+...+.+..+. ..|-|+....|+.+.+..+ .+.-..+|+||||..++. . +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~------~---~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCG------P---DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCC------C---CHHHHHH
Confidence 1210 11233344556666 7899999999999988875 233356799999987541 0 1123334
Q ss_pred HHHHh--cCCCcEEEEEecccC-Cccccccc
Q 016250 243 AIVKA--SELPLSIVLVGVGDG-PWDMMKEF 270 (392)
Q Consensus 243 aIv~A--S~lPLSII~VGVGdg-~F~~M~~L 270 (392)
.+.+. ...++.|.+||||.. +-+.|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44432 124899999999975 34555544
No 18
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.37 E-value=4.9e-06 Score=73.63 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=83.9
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----CCCcCCHHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG----GRFCYGFEEVLS 176 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~----~~~c~G~egVL~ 176 (392)
.+++|+||.|.||.... + + ..+..+.|...+..++...+ +..+-++.|+.. -+...+...+.+
T Consensus 3 ~~vv~vlD~S~SM~~~~---~--------~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~~~~~~~~~~~~~~ 69 (180)
T cd01467 3 RDIMIALDVSGSMLAQD---F--------V-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFTQAPLTLDRESLKE 69 (180)
T ss_pred ceEEEEEECCccccccc---C--------C-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeeeccCCCccHHHHHH
Confidence 57999999999996420 1 1 12334555555556666554 458899999886 122334333332
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEE
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~ 256 (392)
.... +......|.|+...-|+.+.+...+....-.+++|||||.-+. +..++ .+.. ..+....+-|..
T Consensus 70 ~l~~-l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~---~~~~~~gi~i~~ 137 (180)
T cd01467 70 LLED-IKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAA---ELAKNKGVRIYT 137 (180)
T ss_pred HHHH-hhhcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHH---HHHHHCCCEEEE
Confidence 2222 2223357889999889999888766544457889999997553 11222 2222 233456788888
Q ss_pred Eeccc
Q 016250 257 VGVGD 261 (392)
Q Consensus 257 VGVGd 261 (392)
||||+
T Consensus 138 i~ig~ 142 (180)
T cd01467 138 IGVGK 142 (180)
T ss_pred EEecC
Confidence 88887
No 19
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.35 E-value=3.5e-06 Score=89.81 Aligned_cols=140 Identities=21% Similarity=0.231 Sum_probs=95.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCC-----CcCCHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGR-----FCYGFEEVL 175 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~-----~c~G~egVL 175 (392)
.++++.||.|+||. | +..++|-..+..+|....++-.|-++.|+.... ....-++-+
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~~~~~~~~~~~~~ 333 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLFPVPVPATAHNL 333 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEeccccccCCHHHH
Confidence 57999999999995 1 123566666666778888888999999998721 111112333
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhc-CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 254 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s-~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSI 254 (392)
+...+.+..++..|.|++...|+.+.+..... .+.--.+++||||.+.+ +.+.++.+..+. -..-|
T Consensus 334 ~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~~-~~~ri 400 (596)
T TIGR03788 334 ARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRTKL-GDSRL 400 (596)
T ss_pred HHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHHhc-CCceE
Confidence 33344556677789999999999998763222 12234568899999865 567777776553 34567
Q ss_pred EEEecccC-CcccccccC
Q 016250 255 VLVGVGDG-PWDMMKEFD 271 (392)
Q Consensus 255 I~VGVGdg-~F~~M~~LD 271 (392)
..||||+. +...|+.|-
T Consensus 401 ~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 401 FTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred EEEEeCCCcCHHHHHHHH
Confidence 78999975 666677664
No 20
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.34 E-value=5.5e-06 Score=72.84 Aligned_cols=136 Identities=16% Similarity=0.280 Sum_probs=88.6
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCCC----CCc--CCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDGG----RFC--YGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~----~~c--~G~ 171 (392)
.++++.||-|+|+.. ..++.+...+..++..|+ .+-.+-++-|+... +.. ...
T Consensus 1 ~Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~~ 62 (164)
T cd01472 1 ADIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSK 62 (164)
T ss_pred CCEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCCH
Confidence 368999999999952 123444444555555554 34578899999871 112 344
Q ss_pred HHHHHHHHhhcCceee-cCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLKL-AGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 172 egVL~aYr~~l~~v~L-sGPT~FaPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
+.+++. +..+.. .|.|+....|+.|.+...+. ...-.++++||||.-++ +.. .+..
T Consensus 63 ~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-----------~~~---~~~~ 124 (164)
T cd01472 63 DDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD-----------DVE---EPAV 124 (164)
T ss_pred HHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc-----------hHH---HHHH
Confidence 555544 333443 78899999999999887642 23347789999996543 122 2233
Q ss_pred HhcCCCcEEEEEecccCCcccccccCC
Q 016250 246 KASELPLSIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 246 ~AS~lPLSII~VGVGdg~F~~M~~LDd 272 (392)
+..+..+.|..||+|+.+.+.|+.+-+
T Consensus 125 ~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 125 ELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred HHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 333478899999999988888887753
No 21
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.31 E-value=8e-06 Score=74.38 Aligned_cols=148 Identities=17% Similarity=0.240 Sum_probs=89.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC----CCc----CCHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG----RFC----YGFE 172 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~----~~c----~G~e 172 (392)
+++++.||.|+||+.. . .+.-.+++..+...|..+..+-.+-++.|+..- +.+ ...+
T Consensus 1 ~di~~vlD~SgSM~~~--------~-------~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~~~~~~~ 65 (198)
T cd01470 1 LNIYIALDASDSIGEE--------D-------FDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDAD 65 (198)
T ss_pred CcEEEEEECCCCccHH--------H-------HHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccCCCCCHH
Confidence 4789999999999521 0 112244555554444444445679999999861 111 2345
Q ss_pred HHHHHHHhhcCcee-ecCCCChHHHHHHHHHHHHhc----C----CccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 016250 173 EVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQS----G----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 243 (392)
Q Consensus 173 gVL~aYr~~l~~v~-LsGPT~FaPVI~~ai~ive~s----~----~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tida 243 (392)
.++++-+.+..... ..|-|++...|+++.+..... . ..-.++++||||+-++- .++ .+.++.
T Consensus 66 ~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g-------~~~--~~~~~~ 136 (198)
T cd01470 66 DVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG-------GSP--LPTVDK 136 (198)
T ss_pred HHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC-------CCh--hHHHHH
Confidence 55554433322222 346799999999887764211 1 12378899999987641 112 333444
Q ss_pred HHHh----------cCCCcEEEEEecccC-CcccccccCC
Q 016250 244 IVKA----------SELPLSIVLVGVGDG-PWDMMKEFDD 272 (392)
Q Consensus 244 Iv~A----------S~lPLSII~VGVGdg-~F~~M~~LDd 272 (392)
|.++ ....+.|..||||+. +.+.|+++-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 137 IKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred HHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 4443 334689999999974 7888887753
No 22
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.28 E-value=1.2e-05 Score=71.25 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=89.5
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceeecCCCC------CCcCCHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---DEDNLIPCYGFGDGG------RFCYGFE 172 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---DdD~~ipvfGFGa~~------~~c~G~e 172 (392)
++++.||-|+|++. ..++++...+-.++..| .++..|-++.|+... ......+
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~~~~ 63 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKE 63 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCCCHH
Confidence 68999999999952 12344555444445444 356789999999871 1124556
Q ss_pred HHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 016250 173 EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 247 (392)
Q Consensus 173 gVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~A 247 (392)
.+++...++. ...|.|+....|+.+.+.+.+. ...-.++||||||.-++ +.++..+.+.
T Consensus 64 ~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~a~~lk-- 127 (164)
T cd01482 64 DVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELPARVLR-- 127 (164)
T ss_pred HHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHHHHHHH--
Confidence 6666544331 1578899999999888754221 22457889999998654 2334344444
Q ss_pred cCCCcEEEEEecccCCcccccccCC
Q 016250 248 SELPLSIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 248 S~lPLSII~VGVGdg~F~~M~~LDd 272 (392)
+..+-|..||+|+.+...|++|-+
T Consensus 128 -~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 128 -NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred -HCCCEEEEEecCcCCHHHHHHHhC
Confidence 468899999999987777776653
No 23
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.24 E-value=2.9e-05 Score=71.69 Aligned_cols=143 Identities=17% Similarity=0.276 Sum_probs=97.1
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHH-HHHHHHhhcccccCC---CCccceeecCCCCC---Cc-----C
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYE-QAISIIGKTLAVFDE---DNLIPCYGFGDGGR---FC-----Y 169 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~Yq-qAI~~Ig~vl~~yDd---D~~ipvfGFGa~~~---~c-----~ 169 (392)
.+++.||-|.|.+. ..++ .++..+-.++..|+- +-.+-+.-|+.... .. .
T Consensus 2 Di~fllD~S~Si~~------------------~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~ 63 (192)
T cd01473 2 DLTLILDESASIGY------------------SNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERY 63 (192)
T ss_pred cEEEEEeCCCcccH------------------HHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCccccc
Confidence 57899999999852 1133 245555555666664 45888888988621 11 2
Q ss_pred CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCC----ccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 170 GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG----QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 170 G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~----~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
.-++++++-+++.+.....|.|+....|+.+.+.+....+ .--|||+||||.-++. ++....++..
T Consensus 64 ~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~~~~a~ 133 (192)
T cd01473 64 DKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKELQDISL 133 (192)
T ss_pred CHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhHHHHHH
Confidence 3456666655544444457889999999999888654221 2578999999987751 1344556677
Q ss_pred HhcCCCcEEEEEecccCCcccccccCC
Q 016250 246 KASELPLSIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 246 ~AS~lPLSII~VGVGdg~F~~M~~LDd 272 (392)
.+-+..+-|..||||..+-..|+.+-+
T Consensus 134 ~lk~~gV~i~~vGiG~~~~~el~~ia~ 160 (192)
T cd01473 134 LYKEENVKLLVVGVGAASENKLKLLAG 160 (192)
T ss_pred HHHHCCCEEEEEEeccccHHHHHHhcC
Confidence 777899999999999987666666643
No 24
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.23 E-value=7.4e-06 Score=71.25 Aligned_cols=138 Identities=19% Similarity=0.323 Sum_probs=90.2
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCc-CCH----HHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFC-YGF----EEVLS 176 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c-~G~----egVL~ 176 (392)
++++.||.|.||... ...-..||+.+.+. ..+...|-++.||.....+ .++ ++-++
T Consensus 2 ~vvilvD~S~Sm~g~----------------~~~~k~al~~~l~~---L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~ 62 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE----------------KELVKDALRAILRS---LPPGDRFNIIAFGSSVRPLFPGLVPATEENRQ 62 (155)
T ss_pred eEEEEEeCCCCCCCc----------------HHHHHHHHHHHHHh---CCCCCEEEEEEeCCEeeEcchhHHHHhHHHHH
Confidence 689999999999521 02235556555444 5556699999999972222 121 12222
Q ss_pred HHHhhcCceee-cCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEE
Q 016250 177 RYREIVPNLKL-AGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIV 255 (392)
Q Consensus 177 aYr~~l~~v~L-sGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII 255 (392)
.-.+.+..+.. .|.|+....++.|++... ..+.-..+++||||..+. .++++.+.+.++. ..+-|.
T Consensus 63 ~a~~~I~~~~~~~G~t~l~~aL~~a~~~~~-~~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~~-~~~~i~ 129 (155)
T PF13768_consen 63 EALQWIKSLEANSGGTDLLAALRAALALLQ-RPGCVRAIILLTDGQPVS-----------GEEEILDLVRRAR-GHIRIF 129 (155)
T ss_pred HHHHHHHHhcccCCCccHHHHHHHHHHhcc-cCCCccEEEEEEeccCCC-----------CHHHHHHHHHhcC-CCceEE
Confidence 22334445666 899999999999987642 223345668999999643 1467777776644 568888
Q ss_pred EEeccc-CCcccccccC
Q 016250 256 LVGVGD-GPWDMMKEFD 271 (392)
Q Consensus 256 ~VGVGd-g~F~~M~~LD 271 (392)
.+|+|. .+...|++|-
T Consensus 130 ~~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 130 TFGIGSDADADFLRELA 146 (155)
T ss_pred EEEECChhHHHHHHHHH
Confidence 899997 5677777663
No 25
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.14 E-value=2.8e-05 Score=67.48 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=77.6
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC--CC---CcCCHHHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG--GR---FCYGFEEVLS 176 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~--~~---~c~G~egVL~ 176 (392)
.++|+||.|+||... -+. ....++..++..+.. .+..+-++.|+.. .. .-..+..+++
T Consensus 2 ~v~illD~SgSM~~~--------k~~-------~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~~~~~~~~~~~~~~~ 64 (152)
T cd01462 2 PVILLVDQSGSMYGA--------PEE-------VAKAVALALLRIALA--ENRDTYLILFDSEFQTKIVDKTDDLEEPVE 64 (152)
T ss_pred CEEEEEECCCCCCCC--------HHH-------HHHHHHHHHHHHHHH--cCCcEEEEEeCCCceEEecCCcccHHHHHH
Confidence 478999999999621 011 123444444444443 2446889999987 11 1123444444
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCc-cccccccccCCCChhHHHHHHHHHHhcCCCcEEE
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQ-VTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIV 255 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~-Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII 255 (392)
. +..+...|.|++.+.|+.+.+..++....=.++||||||. -.. ..+..++...+....+=|.
T Consensus 65 ~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~~~~~~~v~ 128 (152)
T cd01462 65 F----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELKRSRVARFV 128 (152)
T ss_pred H----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHHHhcCcEEE
Confidence 3 3345568999999999999998876543336789999995 222 1233222333334566777
Q ss_pred EEecccC
Q 016250 256 LVGVGDG 262 (392)
Q Consensus 256 ~VGVGdg 262 (392)
.||||+.
T Consensus 129 ~~~~g~~ 135 (152)
T cd01462 129 ALALGDH 135 (152)
T ss_pred EEEecCC
Confidence 7788763
No 26
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.12 E-value=1.4e-05 Score=72.57 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=90.2
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---------CCCCccceeecCCCCCC----
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---------DEDNLIPCYGFGDGGRF---- 167 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---------DdD~~ipvfGFGa~~~~---- 167 (392)
+++++.||-|+|++. ..++.+.+.+-.++..| .++-.+-++.|+.....
T Consensus 3 ~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l 64 (186)
T cd01480 3 VDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGF 64 (186)
T ss_pred eeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEec
Confidence 689999999999962 12344444444444444 22457889999977211
Q ss_pred ---cCCHHHHHHHHHhhcCcee-ecCCCChHHHHHHHHHHHHh--cCCccEEEEEEeCCccccccccccCCCChhHHHHH
Q 016250 168 ---CYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQ--SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTV 241 (392)
Q Consensus 168 ---c~G~egVL~aYr~~l~~v~-LsGPT~FaPVI~~ai~ive~--s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Ti 241 (392)
-...+.+++ .+..++ ..|.|+....|+.+.+.... ....-.++|+||||..+... .....
T Consensus 65 ~~~~~~~~~l~~----~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~----------~~~~~ 130 (186)
T cd01480 65 LRDIRNYTSLKE----AVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP----------DGGIE 130 (186)
T ss_pred ccccCCHHHHHH----HHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc----------chhHH
Confidence 123444444 344444 47899999999999988765 12334788999999864310 12334
Q ss_pred HHHHHhcCCCcEEEEEecccCCcccccccC
Q 016250 242 DAIVKASELPLSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 242 daIv~AS~lPLSII~VGVGdg~F~~M~~LD 271 (392)
+++.++-+..+.|..||||..+-..|+++-
T Consensus 131 ~~~~~~~~~gi~i~~vgig~~~~~~L~~IA 160 (186)
T cd01480 131 KAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred HHHHHHHHCCCEEEEEecCccchHHHHHHH
Confidence 555666688999999999986655565553
No 27
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.11 E-value=6.1e-05 Score=65.78 Aligned_cols=126 Identities=20% Similarity=0.292 Sum_probs=83.8
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceeecCCC--C----C--CcC
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDG--G----R--FCY 169 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---D~~ipvfGFGa~--~----~--~c~ 169 (392)
+++++.+|.|.|+.. .++++...+..++..+.. .-.+-+..|+.. . + .-.
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~ 61 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHN 61 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCC
Confidence 478999999999841 134555555555666654 678899999984 1 1 112
Q ss_pred CHHHHHHHHHhhcCcee-ecCCCChHHHHHHHHHHHHhc----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 016250 170 GFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 244 (392)
Q Consensus 170 G~egVL~aYr~~l~~v~-LsGPT~FaPVI~~ai~ive~s----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI 244 (392)
..+.++++-. .+. ..|.|+....|+.+.+...+. .....++++||||..++ +..+..+.+
T Consensus 62 ~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~~~~~l 126 (163)
T cd01476 62 DGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEKQARIL 126 (163)
T ss_pred CHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHHHHHHH
Confidence 3445555433 233 467899999999999887521 12237889999997754 123445566
Q ss_pred HHhcCCCcEEEEEecccC
Q 016250 245 VKASELPLSIVLVGVGDG 262 (392)
Q Consensus 245 v~AS~lPLSII~VGVGdg 262 (392)
.+ ..-+.|+.||+|+.
T Consensus 127 ~~--~~~v~v~~vg~g~~ 142 (163)
T cd01476 127 RA--VPNIETFAVGTGDP 142 (163)
T ss_pred hh--cCCCEEEEEECCCc
Confidence 55 56688999999986
No 28
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.07 E-value=5.1e-05 Score=69.53 Aligned_cols=141 Identities=15% Similarity=0.192 Sum_probs=93.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceeecCCC-----CCCcCCHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDG-----GRFCYGFE 172 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---D~~ipvfGFGa~-----~~~c~G~e 172 (392)
.+++|+||.|.||..+ +-.+|-.++|-..+..++..+.+ ...+-++.|++. -|.-...+
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~ 70 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPR 70 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHH
Confidence 4799999999999632 12368889999999998987733 457888999544 22224555
Q ss_pred HHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC
Q 016250 173 EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 173 gVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~--~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
.++..-+.. +...|-|++...|+.|.+..+.... +=.||||++||.-.+ ..+..+++..+.+.
T Consensus 71 ~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~~~~~l~~~ 135 (183)
T cd01453 71 KHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYETIDKLKKE 135 (183)
T ss_pred HHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHHHHHHHHHc
Confidence 555443332 2346779999999999998865322 224788899986543 11222345555566
Q ss_pred CcEEEEEecccCCccccccc
Q 016250 251 PLSIVLVGVGDGPWDMMKEF 270 (392)
Q Consensus 251 PLSII~VGVGdg~F~~M~~L 270 (392)
.+-|-+||||.+ ...|+++
T Consensus 136 ~I~v~~IgiG~~-~~~L~~i 154 (183)
T cd01453 136 NIRVSVIGLSAE-MHICKEI 154 (183)
T ss_pred CcEEEEEEechH-HHHHHHH
Confidence 788999999853 2344444
No 29
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.04 E-value=1.9e-05 Score=71.35 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=85.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC-CCCccceeecCCCCCCc----CCHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD-EDNLIPCYGFGDGGRFC----YGFEEVL 175 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD-dD~~ipvfGFGa~~~~c----~G~egVL 175 (392)
+++++.||-|+|++.. +.+++..+-.++..|+ .+-.+-++.|+...... ..-+.+.
T Consensus 5 ~Dvv~llD~SgSm~~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~ 65 (185)
T cd01474 5 FDLYFVLDKSGSVAAN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSSAII 65 (185)
T ss_pred eeEEEEEeCcCchhhh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccccHHHHH
Confidence 6899999999999621 1112222223333333 35688999999862211 1122233
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHh--cCCcc--EEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ--SGGQY--HVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP 251 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~--s~~~Y--~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP 251 (392)
++.. .+..+...|.|+....|+.|.+.+.. .++.. .++++||||..++.. ...+.++...+-+.-
T Consensus 66 ~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~~a~~l~~~g 134 (185)
T cd01474 66 KGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEHEAKLSRKLG 134 (185)
T ss_pred HHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHHHHHHHHHcC
Confidence 3221 13455557899999999999877632 22222 778999999875310 112233333444567
Q ss_pred cEEEEEecccCCcccccccCC
Q 016250 252 LSIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 252 LSII~VGVGdg~F~~M~~LDd 272 (392)
+-|..||||+.+...|+.+-+
T Consensus 135 v~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 135 AIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred CEEEEEeechhhHHHHHHHhC
Confidence 889999998888777877753
No 30
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.95 E-value=0.00011 Score=72.03 Aligned_cols=134 Identities=20% Similarity=0.310 Sum_probs=92.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----CCCcCCHHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG----GRFCYGFEEVLS 176 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~----~~~c~G~egVL~ 176 (392)
.++++|||-|+||.... . .++..| |+..|.+.+..... +.+-+..||.. .|.-..+.. +
T Consensus 61 ~qIvlaID~S~SM~~~~-----------~--~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~~v~Plt~d~~~--~ 123 (266)
T cd01460 61 YQILIAIDDSKSMSENN-----------S--KKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQILHPFDEQFSS--Q 123 (266)
T ss_pred ceEEEEEecchhccccc-----------c--cccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCceEeCCCCCCchh--h
Confidence 67999999999996421 1 245555 88888888887764 68999999998 233334443 3
Q ss_pred HHHhhcCceeec-CCCChHHHHHHHHHHHHhcC----C--ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcC
Q 016250 177 RYREIVPNLKLA-GPTSFAPVIEMAMSIVEQSG----G--QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASE 249 (392)
Q Consensus 177 aYr~~l~~v~Ls-GPT~FaPVI~~ai~ive~s~----~--~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~ 249 (392)
+.-+++....+. +-|+.+..|+.++++.++.. + .-.++|||+||.-.+. +.....++.+|.+
T Consensus 124 a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~-----------e~~~~~~~r~a~e 192 (266)
T cd01460 124 SGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS-----------EGAQKVRLREARE 192 (266)
T ss_pred HHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC-----------ccHHHHHHHHHHH
Confidence 333444433333 55999999999999876541 1 1278899999983321 2333355888888
Q ss_pred CCcEEEEEecccC
Q 016250 250 LPLSIVLVGVGDG 262 (392)
Q Consensus 250 lPLSII~VGVGdg 262 (392)
..+.+++|||=+.
T Consensus 193 ~~i~l~~I~ld~~ 205 (266)
T cd01460 193 QNVFVVFIIIDNP 205 (266)
T ss_pred cCCeEEEEEEcCC
Confidence 9999999999664
No 31
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.94 E-value=0.00015 Score=77.82 Aligned_cols=133 Identities=13% Similarity=0.184 Sum_probs=90.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-Cccc--eeecCCCCCC---c-----C
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDED-NLIP--CYGFGDGGRF---C-----Y 169 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD-~~ip--vfGFGa~~~~---c-----~ 169 (392)
++++|.||-|+|++. .|-.++|+..+..++..|+-. ..+- +..|+..... . .
T Consensus 43 lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~ 105 (576)
T PTZ00441 43 VDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASK 105 (576)
T ss_pred ceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccc
Confidence 789999999999962 123466777777777777532 2333 3678877211 1 1
Q ss_pred CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC---CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 016250 170 GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 246 (392)
Q Consensus 170 G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~---~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~ 246 (392)
.-+.++.+-.++...+...|-|++...|+.+.+...+.+ ..--|+|+||||.-++ ..++++++..
T Consensus 106 Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dvleaAq~ 173 (576)
T PTZ00441 106 DKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRALEESRK 173 (576)
T ss_pred cHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccHHHHHHH
Confidence 234666666666666667899999999999988765431 2236889999998653 1345555566
Q ss_pred hcCCCcEEEEEecccC
Q 016250 247 ASELPLSIVLVGVGDG 262 (392)
Q Consensus 247 AS~lPLSII~VGVGdg 262 (392)
.....+-|..||||.+
T Consensus 174 LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 174 LKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHCCCEEEEEEeCCC
Confidence 6677899999999974
No 32
>PRK13685 hypothetical protein; Provisional
Probab=97.92 E-value=5.7e-05 Score=74.96 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=92.5
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----CCCcCCHHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG----GRFCYGFEEVLS 176 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~----~~~c~G~egVL~ 176 (392)
.+++++||.|+||..+ +..+|..+.|-..+..++..+.++..+-++.|++. -+...+.+.+.+
T Consensus 89 ~~vvlvlD~S~SM~~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t~d~~~l~~ 155 (326)
T PRK13685 89 AVVMLVIDVSQSMRAT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPTTNREATKN 155 (326)
T ss_pred ceEEEEEECCccccCC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCCCCHHHHHH
Confidence 4689999999999632 11357788888888888888877778999999987 233344444433
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhc--------CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhc
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--------GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKAS 248 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s--------~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS 248 (392)
+ +..+...+-|+...-|..+.+.+++. +..--++|+||||.-+...+. .+.....+++..|.
T Consensus 156 ~----l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~------~~~~~~~~aa~~a~ 225 (326)
T PRK13685 156 A----IDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNP------DNPRGAYTAARTAK 225 (326)
T ss_pred H----HHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCC------CCcccHHHHHHHHH
Confidence 3 33455667788888888888876531 112345689999976531100 00111234566667
Q ss_pred CCCcEEEEEecccC
Q 016250 249 ELPLSIVLVGVGDG 262 (392)
Q Consensus 249 ~lPLSII~VGVGdg 262 (392)
+..+.|-.||||..
T Consensus 226 ~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 226 DQGVPISTISFGTP 239 (326)
T ss_pred HcCCeEEEEEECCC
Confidence 77888999999963
No 33
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.91 E-value=0.00022 Score=64.15 Aligned_cols=141 Identities=17% Similarity=0.214 Sum_probs=89.3
Q ss_pred eEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceeecCCC-----CCCcCCHHHHHH
Q 016250 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA-VFDEDNLIPCYGFGDG-----GRFCYGFEEVLS 176 (392)
Q Consensus 103 liVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~-~yDdD~~ipvfGFGa~-----~~~c~G~egVL~ 176 (392)
+++.||.|+||.. .+..+.|...+..++. .+..+..+-++.|... -+...+.+.+.+
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~ 65 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSVELAKR 65 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCCCHHHHHH
Confidence 5789999999952 0234555555555553 3445668899999753 133345555543
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHH-hc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcE
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVE-QS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 253 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive-~s--~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLS 253 (392)
.+..+...|-|++...|+.+.+..+ +. .+.-.++++||||..+... ++......+++.++-...+.
T Consensus 66 ----~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~-------~~~~~~~~~~~~~l~~~gi~ 134 (178)
T cd01451 66 ----RLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGP-------DPTADRALAAARKLRARGIS 134 (178)
T ss_pred ----HHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCC-------CchhHHHHHHHHHHHhcCCc
Confidence 3444567899999999999998872 22 1223678999999865311 11111224555556677888
Q ss_pred EEEEecccCC--cccccccC
Q 016250 254 IVLVGVGDGP--WDMMKEFD 271 (392)
Q Consensus 254 II~VGVGdg~--F~~M~~LD 271 (392)
|+.||+|... -+.|++|-
T Consensus 135 v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 135 ALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred EEEEeCCCCccCccHHHHHH
Confidence 9999998754 34456553
No 34
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.84 E-value=0.00018 Score=62.38 Aligned_cols=142 Identities=15% Similarity=0.223 Sum_probs=85.4
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCc------CCHHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFC------YGFEEVL 175 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c------~G~egVL 175 (392)
++++.||-|.|++.. ..+...++|..+..-+...+..-.+-+.-||...... ...+.++
T Consensus 1 DivflvD~S~sm~~~---------------~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~ 65 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGD---------------NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLL 65 (178)
T ss_dssp EEEEEEE-STTSCHH---------------HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHH
T ss_pred CEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHhhhccccccccceeeeeccccccccccccccccccc
Confidence 478999999999631 0122345555555544466777888899999872111 2345555
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
+.- ........|.|++...|+.|.+..... .....|||+||||..++.. ...+....+.+. .
T Consensus 66 ~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~---------~~~~~~~~~~~~--~ 132 (178)
T PF00092_consen 66 NAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD---------SPSEEAANLKKS--N 132 (178)
T ss_dssp HHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------GHHHHHHHHHHH--C
T ss_pred ccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------chHHHHHHHHHh--c
Confidence 532 123345779999999999999986543 4567899999999988631 122233333332 4
Q ss_pred CcEEEEEecccCCcccccccC
Q 016250 251 PLSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 251 PLSII~VGVGdg~F~~M~~LD 271 (392)
-+.++.||++..+-..|+.|-
T Consensus 133 ~i~~~~ig~~~~~~~~l~~la 153 (178)
T PF00092_consen 133 GIKVIAIGIDNADNEELRELA 153 (178)
T ss_dssp TEEEEEEEESCCHHHHHHHHS
T ss_pred CcEEEEEecCcCCHHHHHHHh
Confidence 555555555334555555553
No 35
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.84 E-value=0.00018 Score=67.25 Aligned_cols=136 Identities=16% Similarity=0.215 Sum_probs=88.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceeecCCCCCC------cCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDGGRF------CYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---D~~ipvfGFGa~~~~------c~G~ 171 (392)
+.+++.||-|+|++. ..++++...+..++..|+- .-.+-++.|+..... ....
T Consensus 3 ~DlvfllD~S~Sm~~------------------~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~ 64 (224)
T cd01475 3 TDLVFLIDSSRSVRP------------------ENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSK 64 (224)
T ss_pred ccEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCH
Confidence 578999999999851 2367777777777777754 448999999987211 1234
Q ss_pred HHHHHHHHhhcCceeecCCCChHHHHHHHHHHHH-h-c---CCc---cEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE-Q-S---GGQ---YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 243 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive-~-s---~~~---Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tida 243 (392)
+++.++-..+ .. +.|.|+-.-.|+.+.+.+- + . ... -.|+|+||||.-.+ +..+..+.
T Consensus 65 ~~l~~~i~~i-~~--~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~-----------~~~~~a~~ 130 (224)
T cd01475 65 ADLKRAVRRM-EY--LETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD-----------DVSEVAAK 130 (224)
T ss_pred HHHHHHHHhC-cC--CCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------cHHHHHHH
Confidence 5555543322 11 4567877777777776531 1 1 111 37889999998654 13333333
Q ss_pred HHHhcCCCcEEEEEecccCCcccccccC
Q 016250 244 IVKASELPLSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 244 Iv~AS~lPLSII~VGVGdg~F~~M~~LD 271 (392)
+ -..-+.|..||||+.+...|+++-
T Consensus 131 l---k~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 131 A---RALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred H---HHCCcEEEEEeCCcCCHHHHHHHh
Confidence 3 356789999999997766666664
No 36
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.83 E-value=4.6e-05 Score=66.50 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=79.4
Q ss_pred eEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC---CCCcCCHHHHHHHHH
Q 016250 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG---GRFCYGFEEVLSRYR 179 (392)
Q Consensus 103 liVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~---~~~c~G~egVL~aYr 179 (392)
++||||-|+|+.. ....+++..|..+++.+ ...+-++-|-++ ...... ..
T Consensus 1 i~vaiDtSGSis~------------------~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~~~-------~~ 53 (126)
T PF09967_consen 1 IVVAIDTSGSISD------------------EELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVFRS-------LE 53 (126)
T ss_pred CEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEEec-------cc
Confidence 5799999999842 24678899999999999 445888888776 222222 11
Q ss_pred hhcCceee--cCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEE
Q 016250 180 EIVPNLKL--AGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLV 257 (392)
Q Consensus 180 ~~l~~v~L--sGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~V 257 (392)
..+..+++ .|.|+|.|+++.+.+. .....++|+||||..... ..+=.+|+=|++.
T Consensus 54 ~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~P~~~vlWvl~ 110 (126)
T PF09967_consen 54 DELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEAPPYPVLWVLP 110 (126)
T ss_pred ccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCCCCCcEEEEEe
Confidence 22223333 4789999999998654 334677889999987531 1122789999999
Q ss_pred e--cccCCccccccc
Q 016250 258 G--VGDGPWDMMKEF 270 (392)
Q Consensus 258 G--VGdg~F~~M~~L 270 (392)
| -...||+..-+|
T Consensus 111 ~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 111 GNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCCCCCCCEEEEEe
Confidence 9 223466655444
No 37
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.73 E-value=0.00052 Score=63.83 Aligned_cols=141 Identities=8% Similarity=0.132 Sum_probs=95.1
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---------CCccceeecCCC-CC----
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---------DNLIPCYGFGDG-GR---- 166 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---------D~~ipvfGFGa~-~~---- 166 (392)
+.++++||-|.|++. +.++++..-|..++..++. .-.+-+.-|+.. ..
T Consensus 20 ~DivfvlD~S~Sm~~------------------~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L 81 (193)
T cd01477 20 LDIVFVVDNSKGMTQ------------------GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADL 81 (193)
T ss_pred eeEEEEEeCCCCcch------------------hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEec
Confidence 568999999999951 2367777777777777665 257888888887 11
Q ss_pred -CcCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 016250 167 -FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 240 (392)
Q Consensus 167 -~c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~T 240 (392)
.....++++++....+..+...|.|+....|+.|.+..... ...--|+|+||||.-... ....
T Consensus 82 ~d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-----------~~~~ 150 (193)
T cd01477 82 NDLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-----------SNDP 150 (193)
T ss_pred ccccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC-----------CCCH
Confidence 22356788887776555555567899999999999887642 123477899999854321 0112
Q ss_pred HHHHHHhcCCCcEEEEEecccC-Cccccccc
Q 016250 241 VDAIVKASELPLSIVLVGVGDG-PWDMMKEF 270 (392)
Q Consensus 241 idaIv~AS~lPLSII~VGVGdg-~F~~M~~L 270 (392)
.++..++.+..+-|.-||||.+ +=..|++|
T Consensus 151 ~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L 181 (193)
T cd01477 151 RPIAARLKSTGIAIITVAFTQDESSNLLDKL 181 (193)
T ss_pred HHHHHHHHHCCCEEEEEEeCCCCCHHHHHHH
Confidence 2334445577999999999984 21235544
No 38
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.67 E-value=0.00064 Score=61.32 Aligned_cols=129 Identities=20% Similarity=0.259 Sum_probs=88.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceeecCCCCC------CcCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDGGR------FCYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---D~~ipvfGFGa~~~------~c~G~ 171 (392)
+.+++.||-|+|.+ +..++++..-+..++..|+. .-.+-+..|+.... .-...
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~ 62 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTK 62 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCH
Confidence 36899999999974 23467777778888888876 45788889988711 12344
Q ss_pred HHHHHHHHhhcCceeecCCCChHHHHHHHHHHH--HhcC---CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIV--EQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 246 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~iv--e~s~---~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~ 246 (392)
++++++-+. ++ .+.|.|+....|+.|.+.+ ...+ ..-.|+|+||||.-++.. .+.+++.+
T Consensus 63 ~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~~~~~~~~ 127 (177)
T cd01469 63 EEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------LLKDVIPQ 127 (177)
T ss_pred HHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------ccHHHHHH
Confidence 566554332 22 2578899999999998875 2221 235788999999987631 12334555
Q ss_pred hcCCCcEEEEEecccC
Q 016250 247 ASELPLSIVLVGVGDG 262 (392)
Q Consensus 247 AS~lPLSII~VGVGdg 262 (392)
|-..-+-|.-||||+.
T Consensus 128 ~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 128 AEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHCCcEEEEEEeccc
Confidence 5567899999999984
No 39
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.57 E-value=0.00082 Score=72.48 Aligned_cols=154 Identities=15% Similarity=0.193 Sum_probs=100.5
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcc-cccCCCCccceeecCCC-----CCCcCCHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTL-AVFDEDNLIPCYGFGDG-----GRFCYGFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl-~~yDdD~~ipvfGFGa~-----~~~c~G~egV 174 (392)
..++++||.|+||.- +.-..|-..+..+| ..|-..-.+-++.|+.. -+....++.+
T Consensus 402 ~~vvfvvD~SGSM~~------------------~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~~~~~~ 463 (584)
T PRK13406 402 TTTIFVVDASGSAAL------------------HRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTRSLVRA 463 (584)
T ss_pred ccEEEEEECCCCCcH------------------hHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCcCHHHH
Confidence 568999999999931 12344444555545 34656668999999654 2333455555
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCc
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPL 252 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s--~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPL 252 (392)
. +.+..+.-.|-|.++.-|..+.+.+++. .+.-.++|+||||..+...+...|. .....+...+...+-..-+
T Consensus 464 ~----~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~a~~~~~~gi 538 (584)
T PRK13406 464 K----RSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAAARALRAAGL 538 (584)
T ss_pred H----HHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHHHHHHHhcCC
Confidence 4 3445667789999999999999887654 2334678999999976422211111 1123444555666666778
Q ss_pred EEEEEecccCCcccccccCCCCCCc
Q 016250 253 SIVLVGVGDGPWDMMKEFDDNIPAR 277 (392)
Q Consensus 253 SII~VGVGdg~F~~M~~LDd~l~~R 277 (392)
.+++|++|......|++|-+.+.++
T Consensus 539 ~~~vId~g~~~~~~~~~LA~~~gg~ 563 (584)
T PRK13406 539 PALVIDTSPRPQPQARALAEAMGAR 563 (584)
T ss_pred eEEEEecCCCCcHHHHHHHHhcCCe
Confidence 9999999988777788776544443
No 40
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.51 E-value=0.0014 Score=70.58 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=93.7
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceeecCCC-----CCCcCCHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDG-----GRFCYGFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~-yDdD~~ipvfGFGa~-----~~~c~G~egV 174 (392)
..++|+||.|+||.. +..+.|-..+..++.. |-....+-++.|+.. -+.-.+.+.+
T Consensus 408 ~~v~fvvD~SGSM~~------------------~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~~~~~~ 469 (589)
T TIGR02031 408 RLLIFVVDASGSAAV------------------ARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSRSVEQA 469 (589)
T ss_pred ceEEEEEECCCCCCh------------------HHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCCCHHHH
Confidence 447899999999941 2345555555555543 433347999999754 2333455554
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCCh---h-HHHHHHHHHHhc
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSP---Q-EQKTVDAIVKAS 248 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--~~Y~VLLIITDG~Itd~vd~~~~~~~~---d-~~~TidaIv~AS 248 (392)
. +.+..+...|.|.++..|..+.+..++.. ..-.++|+||||.-+-.++.......+ + .++...+..+..
T Consensus 470 ~----~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 545 (589)
T TIGR02031 470 K----RRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIR 545 (589)
T ss_pred H----HHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHH
Confidence 4 44667778999999999999999876532 223577999999865322110000010 0 112222233334
Q ss_pred CCCcEEEEEecccCCc--ccccccCCCCCCc
Q 016250 249 ELPLSIVLVGVGDGPW--DMMKEFDDNIPAR 277 (392)
Q Consensus 249 ~lPLSII~VGVGdg~F--~~M~~LDd~l~~R 277 (392)
...+.+++||+|.+.. +.|++|-+.+.++
T Consensus 546 ~~gi~~~vid~~~~~~~~~~~~~lA~~~~g~ 576 (589)
T TIGR02031 546 EAGMPALVIDTAMRFVSTGFAQKLARKMGAH 576 (589)
T ss_pred hcCCeEEEEeCCCCCccchHHHHHHHhcCCc
Confidence 5678999999997644 4477665444433
No 41
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=97.35 E-value=0.0038 Score=60.42 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=80.1
Q ss_pred CceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceeecCCC----CCCcCCHH
Q 016250 98 LESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDG----GRFCYGFE 172 (392)
Q Consensus 98 les~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~-yDdD~~ipvfGFGa~----~~~c~G~e 172 (392)
.. +++++.||.|+||.. ..+.|...+..++.. +..+..+-++.|+.. .+.-...+
T Consensus 52 ~p-~~vvlvlD~SgSM~~-------------------~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t~~~~ 111 (296)
T TIGR03436 52 LP-LTVGLVIDTSGSMRN-------------------DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFTSDPR 111 (296)
T ss_pred CC-ceEEEEEECCCCchH-------------------HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCCCCHH
Confidence 44 789999999999941 124555555555654 556778999999987 23334556
Q ss_pred HHHHHHHhhcCc-----------eeecCCCChHHHHHHHH-HHHHhcC----CccEEEEEEeCCccccccccccCCCChh
Q 016250 173 EVLSRYREIVPN-----------LKLAGPTSFAPVIEMAM-SIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQ 236 (392)
Q Consensus 173 gVL~aYr~~l~~-----------v~LsGPT~FaPVI~~ai-~ive~s~----~~Y~VLLIITDG~Itd~vd~~~~~~~~d 236 (392)
.+.++-....+. +...|.|+....|..+. +...+.. +. -++|+||||.-+.+
T Consensus 112 ~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~----------- 179 (296)
T TIGR03436 112 LLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRS----------- 179 (296)
T ss_pred HHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcch-----------
Confidence 665555544321 22367788777765554 3333221 22 57899999965431
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccc
Q 016250 237 EQKTVDAIVKASELPLSIVLVGVGD 261 (392)
Q Consensus 237 ~~~TidaIv~AS~lPLSII~VGVGd 261 (392)
.....+++..+-+.-+.|..||+|+
T Consensus 180 ~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 1122233333445578888888875
No 42
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.33 E-value=0.0047 Score=57.84 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=105.1
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceeecCCC-----CCCcCCHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDG-----GRFCYGFEE 173 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---D~~ipvfGFGa~-----~~~c~G~eg 173 (392)
-.+|+||.|.||... +-.+|-++.+...+..++..|-+ ...+-+..|+++ -+...+...
T Consensus 5 a~vi~lD~S~sM~a~-------------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~ 71 (187)
T cd01452 5 ATMICIDNSEYMRNG-------------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGK 71 (187)
T ss_pred EEEEEEECCHHHHcC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHH
Confidence 478999999998531 12478999999998887744433 457888889885 233356666
Q ss_pred HHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC---CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC
Q 016250 174 VLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 174 VL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~---~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
++..-+ .+.+.|.+++...|+.|....+... ..=-|++|++++.-.| +....+++.++.+.
T Consensus 72 ~~~~L~----~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~~~~~lkk~ 135 (187)
T cd01452 72 ILSKLH----DVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVKLAKRLKKN 135 (187)
T ss_pred HHHHHH----hCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHHHHHHHHHc
Confidence 665544 4456799999999999988775432 2225567776664333 45666777788888
Q ss_pred CcEEEEEecccC--CcccccccCCCCCCccccceecccchh
Q 016250 251 PLSIVLVGVGDG--PWDMMKEFDDNIPARAFDNFQFVNFTE 289 (392)
Q Consensus 251 PLSII~VGVGdg--~F~~M~~LDd~l~~R~~DNvqFV~f~d 289 (392)
.+.+-+||+|+. +=+.|+.|-+.... -||-+||....
T Consensus 136 ~I~v~vI~~G~~~~~~~~l~~~~~~~~~--~~~s~~~~~~~ 174 (187)
T cd01452 136 NVSVDIINFGEIDDNTEKLTAFIDAVNG--KDGSHLVSVPP 174 (187)
T ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHhcC--CCCceEEEeCC
Confidence 999999999975 33444444333321 36778876543
No 43
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.29 E-value=0.0012 Score=62.11 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=85.9
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC---CC-------cCCH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG---RF-------CYGF 171 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~---~~-------c~G~ 171 (392)
+++++||.|+||.. |+ .+.+...+ --.|...+.+.+..|.+....+..||+... ++ -..-
T Consensus 2 ~l~lavDlSgSM~~-----~~----~~dg~~~~-RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~~lt~d~p~t~d~ 71 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----GYDGRLDR-SLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFVKTNHPPKNNK 71 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----ccCCcccc-HHHHHHHHHHHHHHHHHhCccceeeecCcccccCccccccCcccch
Confidence 68999999999962 21 12222112 234445554445555566677777886642 11 1122
Q ss_pred H--HHHHHHHhhcCceeecCCCChHHHHHHHHHHHH-hcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhc
Q 016250 172 E--EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE-QSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKAS 248 (392)
Q Consensus 172 e--gVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive-~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS 248 (392)
+ +++...-.-. ++.+.|+..= ..|..+++..+ ++..+=.|++.||||.-+. +.++|.+. |-.-|.
T Consensus 72 ~~~~~l~~~l~~~-q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P~~a----Aa~lA~ 139 (191)
T cd01455 72 ERLETLKMMHAHS-QFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQPKKL----ADALAR 139 (191)
T ss_pred hHHHHHHHHHHhc-ccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCChHHH----HHHHHH
Confidence 2 3443222211 3346676433 88888888887 6655567889999998764 44555321 123355
Q ss_pred CCCcEEEEEecccCCcccccccC
Q 016250 249 ELPLSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 249 ~lPLSII~VGVGdg~F~~M~~LD 271 (392)
+.-+=|-.||||..+.+.++.+-
T Consensus 140 ~~gV~iytIgiG~~d~~~l~~iA 162 (191)
T cd01455 140 EPNVNAFVIFIGSLSDEADQLQR 162 (191)
T ss_pred hCCCEEEEEEecCCCHHHHHHHH
Confidence 77788888888886555555543
No 44
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.23 E-value=0.0049 Score=55.58 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=86.7
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCCCC------CcCCHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDGGR------FCYGFE 172 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~~------~c~G~e 172 (392)
.+++.||-|.|.+ ...++++..-|..++..|+ +.-.+-+.-|+.... .-...+
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~ 63 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKA 63 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHH
Confidence 5789999998874 2346777777778888776 346788888887621 112456
Q ss_pred HHHHHHHhhcCceee-cC-CCChHHHHHHHHHHHH-hc-C-----CccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 016250 173 EVLSRYREIVPNLKL-AG-PTSFAPVIEMAMSIVE-QS-G-----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 243 (392)
Q Consensus 173 gVL~aYr~~l~~v~L-sG-PT~FaPVI~~ai~ive-~s-~-----~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tida 243 (392)
+++++-.+ ++. .| .|+-...|+.+.+.+- .. + +--.|||+||||.-.| +..+..+.
T Consensus 64 ~l~~~i~~----i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~~~~~a~~ 128 (165)
T cd01481 64 DVLGAVRR----LRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------DVERPAVA 128 (165)
T ss_pred HHHHHHHh----cccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------hHHHHHHH
Confidence 66665443 333 45 4788888888876642 11 1 2347899999998765 23344444
Q ss_pred HHHhcCCCcEEEEEecccCCcccccccC
Q 016250 244 IVKASELPLSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 244 Iv~AS~lPLSII~VGVGdg~F~~M~~LD 271 (392)
+.+ .-+-|+.||+|..+.+.|+.+-
T Consensus 129 lr~---~gv~i~~vG~~~~~~~eL~~ia 153 (165)
T cd01481 129 LKR---AGIVPFAIGARNADLAELQQIA 153 (165)
T ss_pred HHH---CCcEEEEEeCCcCCHHHHHHHh
Confidence 443 4577888888866666665554
No 45
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.21 E-value=0.0083 Score=55.87 Aligned_cols=151 Identities=13% Similarity=0.192 Sum_probs=96.1
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceeecCCCC-C-----------
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDGG-R----------- 166 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yDdD~~ipvfGFGa~~-~----------- 166 (392)
.++++||.|.||... ..+..++..+.|++.|..+++. ......+-++.||... .
T Consensus 3 ~ivf~iDvS~SM~~~-----------~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES-----------KDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC-----------CCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 478999999999621 0111257889999999999997 5666799999999871 1
Q ss_pred ---CcCCHHHHHHHHHhhcCcee--------ecCCCChHHHHHHHHHHHHhcC-Ccc-EEEEEEeCCccccccccccCCC
Q 016250 167 ---FCYGFEEVLSRYREIVPNLK--------LAGPTSFAPVIEMAMSIVEQSG-GQY-HVLLIIADGQVTRSVDTVRGCL 233 (392)
Q Consensus 167 ---~c~G~egVL~aYr~~l~~v~--------LsGPT~FaPVI~~ai~ive~s~-~~Y-~VLLIITDG~Itd~vd~~~~~~ 233 (392)
.+... +.++...+.+..-. -.+.|.+..+|..+.++..+.. ... -.+++||||.-.- +.=
T Consensus 72 ~~l~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~~~ 144 (218)
T cd01458 72 LDLDTPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------GGD 144 (218)
T ss_pred ecCCCCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------CCC
Confidence 11222 33444444332211 2457899999999999877521 112 4578999996320 000
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEEEecccCC--ccccccc
Q 016250 234 SPQEQKTVDAIVKASELPLSIVLVGVGDGP--WDMMKEF 270 (392)
Q Consensus 234 ~~d~~~TidaIv~AS~lPLSII~VGVGdg~--F~~M~~L 270 (392)
.....+..+.+.+..+.-+.|.+||||..+ |+..+..
T Consensus 145 ~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~~~f~~~~fy 183 (218)
T cd01458 145 SIKDSQAAVKAEDLKDKGIELELFPLSSPGKKFDVSKFY 183 (218)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCCCCCCChhHHH
Confidence 011244456666677789999999998754 5544433
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.19 E-value=0.005 Score=66.78 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=89.1
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceeecCCC-----CCCcCCHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA-VFDEDNLIPCYGFGDG-----GRFCYGFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~-~yDdD~~ipvfGFGa~-----~~~c~G~egV 174 (392)
..++|+||.|+||.. .+..+.|...+..++. .|-....+-+++|++. -+.-.+.+.+
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~~~~~~ 528 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELA 528 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCCCHHHH
Confidence 468899999999951 1234566666655553 4555678899999753 1333455544
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHh----cCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ----SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~----s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
. +.+..+...|.|.++..|..+.+..++ ....=.++|+||||.-+.+ +. + ..-.++..++-....+.
T Consensus 529 ~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~~a~~l~~~ 599 (633)
T TIGR02442 529 A----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDARTIAAKLAAR 599 (633)
T ss_pred H----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHHHHHHHHhc
Confidence 3 244456678999999999999988773 2223467799999986542 10 0 01122333333333445
Q ss_pred CcEEEEEecccC--Cccccccc
Q 016250 251 PLSIVLVGVGDG--PWDMMKEF 270 (392)
Q Consensus 251 PLSII~VGVGdg--~F~~M~~L 270 (392)
-+-+++|+.+.+ +.+.+++|
T Consensus 600 ~i~~~vIdt~~~~~~~~~~~~l 621 (633)
T TIGR02442 600 GILFVVIDTESGFVRLGLAEDL 621 (633)
T ss_pred CCeEEEEeCCCCCcchhHHHHH
Confidence 678888888764 33444444
No 47
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=97.03 E-value=0.0052 Score=58.09 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=74.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----CCCcC--CHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG----GRFCY--GFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~----~~~c~--G~egV 174 (392)
..++|.+|.|+||.. |. +-++..+-.+...+. .+-+|-|+.. ..... +.++.
T Consensus 58 ~~lvvl~DvSGSM~~------------~s-------~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l~~~~~~~~ 115 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAG------------YS-------EFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLLRRRDPEEA 115 (222)
T ss_pred ccEEEEEeCCCChHH------------HH-------HHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhhccCCHHHH
Confidence 379999999999963 11 222333333333333 7889999987 22233 56666
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcC
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASE 249 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~ 249 (392)
+......... ++|.|++...++++.+......-.-.++|||+||.-++ ..++..+.++.|.+...
T Consensus 116 l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~--------~~~~~~~~l~~l~~r~~ 180 (222)
T PF05762_consen 116 LARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTN--------DPEPLAEELRRLRRRGR 180 (222)
T ss_pred HHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccC--------ChHHHHHHHHHHHHhCC
Confidence 6655443333 89999999999999988764432457889999994332 12335555666665443
No 48
>PRK10997 yieM hypothetical protein; Provisional
Probab=96.46 E-value=0.045 Score=58.25 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=80.9
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHH-HHHHhhcccccCCCCccceeecCCCC-----CCcCCHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQA-ISIIGKTLAVFDEDNLIPCYGFGDGG-----RFCYGFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqA-I~~Ig~vl~~yDdD~~ipvfGFGa~~-----~~c~G~egV 174 (392)
-.++|+||.|+||. |. +-.|.+| +-.++.++.. .+..+-++.|++.. +.-.|+..+
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~--q~dr~~li~Fs~~i~~~~l~~~~gl~~l 385 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALA--ENRRCYIMLFSTEVVTYELTGPDGLEQA 385 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHh--cCCCEEEEEecCCceeeccCCccCHHHH
Confidence 46899999999994 21 1134444 3333333332 23345688898861 223577777
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 254 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSI 254 (392)
++.-.. .+.|.|++++.++.+++..++..-.=.++|||+|+..... +.+..+.++.+.+....=+.-
T Consensus 386 l~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~--------~eel~~~L~~Lk~~~~~rf~~ 452 (487)
T PRK10997 386 IRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRL--------PDELVAKVKELQRQHQHRFHA 452 (487)
T ss_pred HHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCC--------hHHHHHHHHHHHHhcCcEEEE
Confidence 765432 2589999999999999888754222367899999964321 112344445555544444444
Q ss_pred EEEeccc-CCcccccccC
Q 016250 255 VLVGVGD-GPWDMMKEFD 271 (392)
Q Consensus 255 I~VGVGd-g~F~~M~~LD 271 (392)
+.| |+ +.=+.|+.||
T Consensus 453 l~i--~~~~~p~l~~ifD 468 (487)
T PRK10997 453 VAM--SAHGKPGIMRIFD 468 (487)
T ss_pred EEe--CCCCCchHHHhcC
Confidence 444 44 3323466665
No 49
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=96.27 E-value=0.027 Score=63.56 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=83.8
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCcCCH-----HHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGF-----EEVLS 176 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~-----egVL~ 176 (392)
.++++||.|+||... . ..+.-.+|+..+. ++.+.++..+-++.|+........+ ....+
T Consensus 306 ~VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL--~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~ 369 (863)
T TIGR00868 306 IVCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFL--LQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERD 369 (863)
T ss_pred eEEEEEECCcccccc-------C-------HHHHHHHHHHHHH--HHhCCCCCEEEEEEECCceeEeeccccCCcHHHHH
Confidence 378899999999521 1 1223345555432 2223456689999999872111111 12333
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 254 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~--~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSI 254 (392)
+-...++ ....|-|++..-|++|++..++... .--++|+||||+-++ ..+ ++.++....+-|
T Consensus 370 aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~---~l~~lk~~gVtI 433 (863)
T TIGR00868 370 ALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISS---CFEEVKQSGAII 433 (863)
T ss_pred HHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHH---HHHHHHHcCCEE
Confidence 3333444 3467899999999999999876432 123568889998543 223 333444568889
Q ss_pred EEEecccCCcccccccC
Q 016250 255 VLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 255 I~VGVGdg~F~~M~~LD 271 (392)
-.||+|...=..|++|-
T Consensus 434 ~TIg~G~dad~~L~~IA 450 (863)
T TIGR00868 434 HTIALGPSAAKELEELS 450 (863)
T ss_pred EEEEeCCChHHHHHHHH
Confidence 99999976544455543
No 50
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=95.03 E-value=0.3 Score=46.65 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=81.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCcCCHHHHHHHHHh
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYRE 180 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~egVL~aYr~ 180 (392)
+-+++-+|.++||. ++.+|.... =.|.-|+.+-.=-... .--.+-+.-||..-....-|-++.+ =
T Consensus 4 lP~~lllDtSgSM~--------Ge~IealN~---Glq~m~~~Lkqdp~Al-e~v~lsIVTF~~~a~~~~pf~~~~n---F 68 (207)
T COG4245 4 LPCYLLLDTSGSMI--------GEPIEALNA---GLQMMIDTLKQDPYAL-ERVELSIVTFGGPARVIQPFTDAAN---F 68 (207)
T ss_pred CCEEEEEecCcccc--------cccHHHHHH---HHHHHHHHHHhChhhh-heeEEEEEEecCcceEEechhhHhh---c
Confidence 34688999999994 346666432 1222222221100000 1234667777754222223334433 2
Q ss_pred hcCceeecCCCChHHHHHHHHHHHHhc--------CCcc-EEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC
Q 016250 181 IVPNLKLAGPTSFAPVIEMAMSIVEQS--------GGQY-HVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP 251 (392)
Q Consensus 181 ~l~~v~LsGPT~FaPVI~~ai~ive~s--------~~~Y-~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP 251 (392)
..|.+...|-|...-.|+.+++++++. .+.| .+..+||||..+|.- ++..++..--+++.--
T Consensus 69 ~~p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w---------~~~~~~~~~~~~~~k~ 139 (207)
T COG4245 69 NPPILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDW---------QAGAALVFQGERRAKS 139 (207)
T ss_pred CCCceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHH---------HhHHHHhhhcccccce
Confidence 346667789999999999999998654 2345 455789999998710 1222333333444444
Q ss_pred cEEEEEecccCCcccccccC
Q 016250 252 LSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 252 LSII~VGVGdg~F~~M~~LD 271 (392)
+-+..||+-..+-..++++-
T Consensus 140 v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 140 VAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred EEEEEecccccccHHHHHHH
Confidence 44444444445666666654
No 51
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.33 E-value=0.41 Score=50.50 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=85.2
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHH-HHHHhhcccccCCCCccceeecCCC------CCCcCCHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQA-ISIIGKTLAVFDEDNLIPCYGFGDG------GRFCYGFEEV 174 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqA-I~~Ig~vl~~yDdD~~ipvfGFGa~------~~~c~G~egV 174 (392)
-++|.||-|+||.-. +=+..+| .-++.+++.. +++.+-++-|... .+...|++++
T Consensus 274 pvilllD~SGSM~G~----------------~e~~AKAvalAl~~~ala--enR~~~~~lF~s~~~~~el~~k~~~~~e~ 335 (437)
T COG2425 274 PVILLLDKSGSMSGF----------------KEQWAKAVALALMRIALA--ENRDCYVILFDSEVIEYELYEKKIDIEEL 335 (437)
T ss_pred CEEEEEeCCCCcCCc----------------HHHHHHHHHHHHHHHHHH--hccceEEEEecccceeeeecCCccCHHHH
Confidence 689999999999521 0011222 2233333332 3566888889774 4555699999
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC-CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcE
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG-GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 253 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~-~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLS 253 (392)
++---. .+.|.|+|...|+.|++.+++.. .+ .=||+||||.-..+ .+....++.+.++++.=+-
T Consensus 336 i~fL~~-----~f~GGTD~~~~l~~al~~~k~~~~~~-adiv~ITDg~~~~~---------~~~~~~v~e~~k~~~~rl~ 400 (437)
T COG2425 336 IEFLSY-----VFGGGTDITKALRSALEDLKSRELFK-ADIVVITDGEDERL---------DDFLRKVKELKKRRNARLH 400 (437)
T ss_pred HHHHhh-----hcCCCCChHHHHHHHHHHhhcccccC-CCEEEEeccHhhhh---------hHHHHHHHHHHHHhhceEE
Confidence 874222 24555999999999999998653 23 44699999964321 2456777888888776665
Q ss_pred EEEEecccCCcccccccC
Q 016250 254 IVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 254 II~VGVGdg~F~~M~~LD 271 (392)
-|+||= .+.=+-|+.+|
T Consensus 401 aV~I~~-~~~~~l~~Isd 417 (437)
T COG2425 401 AVLIGG-YGKPGLMRISD 417 (437)
T ss_pred EEEecC-CCCcccceeee
Confidence 555541 12234444444
No 52
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=92.99 E-value=1.9 Score=42.85 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=93.4
Q ss_pred cCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhh-cccccCCCCccceeecCCCC-----CCcC
Q 016250 96 AGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGK-TLAVFDEDNLIPCYGFGDGG-----RFCY 169 (392)
Q Consensus 96 ~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~-vl~~yDdD~~ipvfGFGa~~-----~~c~ 169 (392)
.|=...=++++||-|+||.- -+.+ +.|=-.+.. +-..|-.-..+-+.+|=..+ +.-.
T Consensus 74 ~~r~g~lvvfvVDASgSM~~----------~~Rm-------~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~ 136 (261)
T COG1240 74 EGRAGNLIVFVVDASGSMAA----------RRRM-------AAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTS 136 (261)
T ss_pred ccCcCCcEEEEEeCcccchh----------HHHH-------HHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcc
Confidence 34443446889999999962 1111 222222222 23456666788889997552 3335
Q ss_pred CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 170 GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 170 G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~----~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
.++.+-+. +..+.-.|-|-.++-|.++.++..+.. ..-.|+|+||||..++... ++ -+.++.++-.
T Consensus 137 sv~~~~~~----L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~-----~~-~~~e~~~~a~ 206 (261)
T COG1240 137 SVELAERA----LERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIP-----LG-PKAETLEAAS 206 (261)
T ss_pred cHHHHHHH----HHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCC-----Cc-hHHHHHHHHH
Confidence 56655543 445567899999999999999865442 3457789999999765321 11 2678888888
Q ss_pred HhcCCCcEEEEEecccCC
Q 016250 246 KASELPLSIVLVGVGDGP 263 (392)
Q Consensus 246 ~AS~lPLSII~VGVGdg~ 263 (392)
++...++-+++|....+.
T Consensus 207 ~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 207 KLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HHhhcCCcEEEEecCCcc
Confidence 888899988999887765
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=89.84 E-value=4.5 Score=39.32 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=32.8
Q ss_pred cCCccEEEEEEeCCcccccc---ccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccc
Q 016250 207 SGGQYHVLLIIADGQVTRSV---DTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 261 (392)
Q Consensus 207 s~~~Y~VLLIITDG~Itd~v---d~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGd 261 (392)
...+=-||++|+||...|.. +....-|..+++++++.|.. .-++-++-||||.
T Consensus 132 r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~--~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 132 RPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIET--RSDVELIAIGIGH 187 (219)
T ss_pred CCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhc--cCCcEEEEEEcCC
Confidence 33445699999999987621 11111344555666665554 3477888888886
No 54
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=84.06 E-value=7.8 Score=42.65 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCccEEEEEEeCCcccccccc---ccC-CCChhHHHHHHHHHHhcCC-CcEEEEEecccC
Q 016250 195 PVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDT---VRG-CLSPQEQKTVDAIVKASEL-PLSIVLVGVGDG 262 (392)
Q Consensus 195 PVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~---~~~-~~~~d~~~TidaIv~AS~l-PLSII~VGVGdg 262 (392)
..|+-|.+...+...+=-|||+|+||...|- .| +.| -|..+++++ |.+.... +|=++-||||..
T Consensus 500 eAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~-~TlsvN~~~~l~~hLr~v---i~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 500 EALMWAHQRLIARPEQRRILMMISDGAPVDD-STLSVNPGNYLERHLRAV---IEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHHHhcCcccceEEEEEeCCCcCCc-cccccCchhHHHHHHHHH---HHHHhccCCceEEEeecccc
Confidence 3444444444444555689999999998751 11 111 232233333 3444443 888888999873
No 55
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=82.07 E-value=12 Score=34.75 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=71.5
Q ss_pred eEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceeecCCCCCC----cCCHHHH-
Q 016250 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDGGRF----CYGFEEV- 174 (392)
Q Consensus 103 liVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yDdD~~ipvfGFGa~~~~----c~G~egV- 174 (392)
+++.||.+.||... ..+... +.+.|++.|-.+++. ..+.-.+-|+.||..... -.|+++|
T Consensus 2 ~vflID~s~sM~~~-----------~~~~~~-~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEP-----------SSESES-PLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS------------BTTCS--HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCC-----------CCCcch-hHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 58999999999632 111111 678888877766543 333467999999987111 1111111
Q ss_pred ---------HHHHHhhcCceee----------cCCCChHHHHHHHHHHHHh--cCCcc--EEEEEEeCCccccccccccC
Q 016250 175 ---------LSRYREIVPNLKL----------AGPTSFAPVIEMAMSIVEQ--SGGQY--HVLLIIADGQVTRSVDTVRG 231 (392)
Q Consensus 175 ---------L~aYr~~l~~v~L----------sGPT~FaPVI~~ai~ive~--s~~~Y--~VLLIITDG~Itd~vd~~~~ 231 (392)
++..+++...+.- .....+..++-.++.+..+ ...++ --+++|||++--. .
T Consensus 70 ~l~~l~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~------~ 143 (224)
T PF03731_consen 70 VLQPLDPPSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH------E 143 (224)
T ss_dssp EEEECC--BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT------T
T ss_pred EeecCCccCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC------C
Confidence 1111122211111 2345677777777777664 33333 3468899875322 0
Q ss_pred CCChhHHHHHHH--HHHhcCCCcEEEEEecc
Q 016250 232 CLSPQEQKTVDA--IVKASELPLSIVLVGVG 260 (392)
Q Consensus 232 ~~~~d~~~Tida--Iv~AS~lPLSII~VGVG 260 (392)
-..+.+.+++- +.+....-+.+.++.+.
T Consensus 144 -~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l~ 173 (224)
T PF03731_consen 144 -DDDELERIIQKLKAKDLQDNGIEIELFFLP 173 (224)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTEEEEEEECT
T ss_pred -CHHHHHHHHHhhccccchhcCcceeEeecC
Confidence 11235666666 66677788888888883
No 56
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=82.04 E-value=3.3 Score=45.09 Aligned_cols=160 Identities=14% Similarity=0.231 Sum_probs=96.5
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCC---CCCHHHHHHHHHhhcccccCCCCccceeecCCCCCC------cCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD---GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRF------CYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~---~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~------c~G~ 171 (392)
+-+.+-||+|.|+.. +.++ ..--..+|+..++.-++..-+- ..+++|-.+-+. +..|
T Consensus 447 la~TLLvD~S~St~a------------~mdetrRvidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~F 512 (637)
T COG4548 447 LAFTLLVDVSASTDA------------KMDETRRVIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKDF 512 (637)
T ss_pred ceeEEEeecccchHH------------HhhhhhhhHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeecc
Confidence 347889999999963 2222 1234456666665555444322 334666555222 2233
Q ss_pred HHHHHHHHhh----cCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 016250 172 EEVLSRYREI----VPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 247 (392)
Q Consensus 172 egVL~aYr~~----l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~A 247 (392)
++ .|... +..+...--|--...|++|.+..-+.++.=-.||++|||...| +|--.|+. -...|.+|+.+|
T Consensus 513 De---s~~~~~~~RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd-~d~YEgr~--gIeDTr~AV~ea 586 (637)
T COG4548 513 DE---SMGETVGPRIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND-FDHYEGRF--GIEDTREAVIEA 586 (637)
T ss_pred cc---ccccccchhheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc-cccccccc--chhhHHHHHHHH
Confidence 32 22222 2233444557778889988876554445557789999999987 45323333 357899999999
Q ss_pred cCCCcEEEEEecccCCcccccccCCCCCCccccceeccc
Q 016250 248 SELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVN 286 (392)
Q Consensus 248 S~lPLSII~VGVGdg~F~~M~~LDd~l~~R~~DNvqFV~ 286 (392)
-+.-|+++-|=|-...-+.+..+-. .|.+-||.
T Consensus 587 Rk~Gi~VF~Vtld~ea~~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 587 RKSGIEVFNVTLDREAISYLPALFG------QNGYAFVE 619 (637)
T ss_pred HhcCceEEEEEecchhhhhhHHHhc------cCceEEcc
Confidence 9999999999887765444433321 25566664
No 57
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=67.52 E-value=18 Score=36.38 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=82.2
Q ss_pred ccccccchHHHHHHHHHcCCceeceEEEEeccCCCCc---CCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCc
Q 016250 79 IADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEW---TGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNL 155 (392)
Q Consensus 79 i~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~---tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ 155 (392)
+.++..-||.|..|++++|++. .+.+|||+.+|--+ .|+--+..+....-....=.=++-|.-..+++..|
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~Y----- 149 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKY----- 149 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-----
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhc-----
Confidence 4445567899999999999995 99999999999765 22211111110000000001144555555566555
Q ss_pred cceeecCCCCCCc-CCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCC
Q 016250 156 IPCYGFGDGGRFC-YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLS 234 (392)
Q Consensus 156 ipvfGFGa~~~~c-~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~ 234 (392)
|+... .||.. .+.+++.+.=++.-.++++-|--.|.--.+.+.+-+++.-. =. |+|-=.||.-
T Consensus 150 -PIvsI--EDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~-na--~llK~NQigT---------- 213 (295)
T PF00113_consen 150 -PIVSI--EDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKAC-NA--LLLKPNQIGT---------- 213 (295)
T ss_dssp --EEEE--ESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT---SE--EEE-HHHHSS----------
T ss_pred -CeEEE--EccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhc-cc--hhhhhhhhHH----------
Confidence 44433 24444 35677766655555578888865554444444333333211 12 3444445543
Q ss_pred hhHHHHHHHHHHhcCCCcEEEE
Q 016250 235 PQEQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 235 ~d~~~TidaIv~AS~lPLSII~ 256 (392)
.-+|++++..|...-..+|+
T Consensus 214 --vte~lea~~~a~~~g~~~vv 233 (295)
T PF00113_consen 214 --VTETLEAVKLAKSAGWGVVV 233 (295)
T ss_dssp --HHHHHHHHHHHHHTT-EEEE
T ss_pred --HHHHHHHHHHHHHCCceeec
Confidence 46899999999887777666
No 58
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=67.12 E-value=41 Score=32.25 Aligned_cols=97 Identities=26% Similarity=0.392 Sum_probs=59.2
Q ss_pred chHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC
Q 016250 85 SLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG 164 (392)
Q Consensus 85 sld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~ 164 (392)
++++| .+|.++|.+ |||+|.|.... +.+|+ +-|..| =+.| +.-+++
T Consensus 53 T~~ev-~~l~~aGad----IIAlDaT~R~R--------p~~l~----------~li~~i---~~~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEV-DALAEAGAD----IIALDATDRPR--------PETLE----------ELIREI---KEKY-------QLVMAD- 98 (192)
T ss_dssp SHHHH-HHHHHCT-S----EEEEE-SSSS---------SS-HH----------HHHHHH---HHCT-------SEEEEE-
T ss_pred CHHHH-HHHHHcCCC----EEEEecCCCCC--------CcCHH----------HHHHHH---HHhC-------cEEeee-
Confidence 67887 678899999 69999997663 12333 223322 1222 344444
Q ss_pred CCCcCCHHHHHHHHHhhcCce--eecCCCChH----HHHHHHHHHHHhcCCccEEEEEEeCCcccc
Q 016250 165 GRFCYGFEEVLSRYREIVPNL--KLAGPTSFA----PVIEMAMSIVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 165 ~~~c~G~egVL~aYr~~l~~v--~LsGPT~Fa----PVI~~ai~ive~s~~~Y~VLLIITDG~Itd 224 (392)
|..+|+.+++.+--+--| .|+|.|.+. |=++.+.++++. +. -+|..|.|..
T Consensus 99 ---ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~-----pvIaEGri~t 155 (192)
T PF04131_consen 99 ---ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DV-----PVIAEGRIHT 155 (192)
T ss_dssp ----SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TS-----EEEEESS--S
T ss_pred ---cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CC-----cEeecCCCCC
Confidence 788999999988766544 488877665 777777777764 21 2789999975
No 59
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=65.61 E-value=46 Score=35.93 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=81.3
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHh-hcccccCCCCccceeecCCCCCCcCCHHHHHHHHHh
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIG-KTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYRE 180 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig-~vl~~yDdD~~ipvfGFGa~~~~c~G~egVL~aYr~ 180 (392)
-++|-+|+|-||-..|+ .-|-.|+--++. -|...|--| .+.+.-||..-..+ .++++-
T Consensus 465 AvallvDtS~SM~~eGR--------------w~PmKQtALALhHLv~TrfrGD-~l~~i~Fgr~A~~v-~v~eLt----- 523 (652)
T COG4867 465 AVALLVDTSFSMVMEGR--------------WLPMKQTALALHHLVCTRFRGD-ALQIIAFGRYARTV-TAAELT----- 523 (652)
T ss_pred ceeeeeeccHHHHHhcc--------------CCchHHHHHHHHHHHHhcCCCc-ceEEEeccchhccc-CHHHHh-----
Confidence 46788999999975442 112223222332 255677655 45677888642211 122221
Q ss_pred hcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccC-------CCChh-HHHHHHHHHHhcCCCc
Q 016250 181 IVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRG-------CLSPQ-EQKTVDAIVKASELPL 252 (392)
Q Consensus 181 ~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~-------~~~~d-~~~TidaIv~AS~lPL 252 (392)
.++.|.-. -||.+..+..|-++.++.++.-.++||||||..+--.....| -++|. +-.|+..+-++.+.-+
T Consensus 524 ~l~~v~eq-gTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~~~r~G~ 602 (652)
T COG4867 524 GLAGVYEQ-GTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDDMARLGA 602 (652)
T ss_pred cCCCcccc-ccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHHHHhccc
Confidence 12333333 389999999999999888777788899999998753322222 22222 4456666666666666
Q ss_pred EEEEEeccc
Q 016250 253 SIVLVGVGD 261 (392)
Q Consensus 253 SII~VGVGd 261 (392)
-|-+.=+|.
T Consensus 603 q~t~FrLg~ 611 (652)
T COG4867 603 QVTIFRLGS 611 (652)
T ss_pred eeeEEeecC
Confidence 666655554
No 60
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.61 E-value=16 Score=37.80 Aligned_cols=108 Identities=22% Similarity=0.226 Sum_probs=61.6
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCcCCHHHHHHHHHh
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYRE 180 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~egVL~aYr~ 180 (392)
..++||||-|+|+-+ -..-++|..|-.|+. .....+|-. +|... |-..|+-
T Consensus 262 ~~i~vaVDtSGS~~d------------------~ei~a~~~Ei~~Il~----~~~~eltli-----~~D~~--v~~~~~~ 312 (396)
T COG3864 262 IKIVVAVDTSGSMTD------------------AEIDAAMTEIFDILK----NKNYELTLI-----ECDNI--VRRMYRV 312 (396)
T ss_pred hheEEEEecCCCccH------------------HHHHHHHHHHHHHHh----CCCcEEEEE-----Eecch--hhhhhcc
Confidence 357899999999842 234567777777762 233444444 23221 1122221
Q ss_pred -----hcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEE
Q 016250 181 -----IVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIV 255 (392)
Q Consensus 181 -----~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII 255 (392)
+-+.+.=.|.|.|.||++..- +..- --+|+.+|||--+-- | .+-..|+=||
T Consensus 313 r~g~~~~~~~~ggG~Tdf~Pvfeyle----k~~~-~~~lIyfTDG~gd~p------------------~-~~r~~~~lwV 368 (396)
T COG3864 313 RKGRDMKKKLDGGGGTDFSPVFEYLE----KNRM-ECFLIYFTDGMGDQP------------------L-VFRPKVLLWV 368 (396)
T ss_pred CCcccCCcccCCCCCccccHHHHHHH----hhcc-cceEEEEccCCCCcc------------------c-ccCCcceEEE
Confidence 222333356799999998663 3221 267899999964320 1 1334568888
Q ss_pred EEeccc
Q 016250 256 LVGVGD 261 (392)
Q Consensus 256 ~VGVGd 261 (392)
+-|-|.
T Consensus 369 l~~~~~ 374 (396)
T COG3864 369 LTGAKG 374 (396)
T ss_pred ecCCcc
Confidence 888653
No 61
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=62.06 E-value=1e+02 Score=33.82 Aligned_cols=153 Identities=13% Similarity=0.183 Sum_probs=86.5
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceeecCCCC---C----C----
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDGG---R----F---- 167 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yDdD~~ipvfGFGa~~---~----~---- 167 (392)
-+++.||+|.||... . .. .....+.+.||+.|-.+++. ..+.-+|-|+-||.+. + .
T Consensus 12 ailflIDvs~sM~~~----~--~~----~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE----S--QG----EDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC----C--cC----cCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 589999999999631 0 01 11246778888887766553 4556789999999871 1 1
Q ss_pred ----cCCHHHHHHHHHhhcCc---------eeecCCCChHHHHHHHHHHHHhcCCcc--EEEEEEeCCccccccccccCC
Q 016250 168 ----CYGFEEVLSRYREIVPN---------LKLAGPTSFAPVIEMAMSIVEQSGGQY--HVLLIIADGQVTRSVDTVRGC 232 (392)
Q Consensus 168 ----c~G~egVL~aYr~~l~~---------v~LsGPT~FaPVI~~ai~ive~s~~~Y--~VLLIITDG~Itd~vd~~~~~ 232 (392)
+-+++.|.+. +.++.. +......+++.+|-.++++......+| -=+++|||-+ ..++.
T Consensus 82 ~~L~~p~a~~i~~L-~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D------~P~~~ 154 (584)
T TIGR00578 82 QELDNPGAKRILEL-DQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED------NPHGN 154 (584)
T ss_pred eeCCCCCHHHHHHH-HHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC------CCCCC
Confidence 1234443321 112111 011122478999999988876533333 1258888853 22222
Q ss_pred CChhHHHHHHHHHHhcCCCcEEEEEeccc-CCcccccccC
Q 016250 233 LSPQEQKTVDAIVKASELPLSIVLVGVGD-GPWDMMKEFD 271 (392)
Q Consensus 233 ~~~d~~~TidaIv~AS~lPLSII~VGVGd-g~F~~M~~LD 271 (392)
=+.....+..-+.+..++-+.|.++-|.. ++|+.-..++
T Consensus 155 ~~~~~~~a~~~a~dl~~~gi~ielf~l~~~~~Fd~s~Fy~ 194 (584)
T TIGR00578 155 DSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYR 194 (584)
T ss_pred chhHHHHHHHHHHHHHhcCeEEEEEecCCCCCCChhhhhH
Confidence 12222333445667777899998887753 2355444333
No 62
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=58.70 E-value=80 Score=31.18 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCC-CCCHHHHHHHH------HhhcccccCCCCcccee
Q 016250 87 DQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISI------IGKTLAVFDEDNLIPCY 159 (392)
Q Consensus 87 d~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~-~~N~YqqAI~~------Ig~vl~~yDdD~~ipvf 159 (392)
-.+..+|.++|... +-+||=||.-.-+ |+ ...-+++||+. +.+++..+-.+-.+|+.
T Consensus 32 ~~~~~~l~~~Gad~--iElGiPfSDP~aD--------------GpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~v 95 (263)
T CHL00200 32 KKALKILDKKGADI--IELGIPYSDPLAD--------------GPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIV 95 (263)
T ss_pred HHHHHHHHHCCCCE--EEECCCCCCCCcc--------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 45667888999983 6778877754421 21 12345555432 34444444334456766
Q ss_pred ecCCCCCCc-CCHHHHHHHHHhh--------------------------cCceeecCCCChHHHHHHHHHHHHhcCCccE
Q 016250 160 GFGDGGRFC-YGFEEVLSRYREI--------------------------VPNLKLAGPTSFAPVIEMAMSIVEQSGGQYH 212 (392)
Q Consensus 160 GFGa~~~~c-~G~egVL~aYr~~--------------------------l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~ 212 (392)
-|+--++.. .|++..++...++ +.-|.|-.||.=..-|+.+++. ..+ +
T Consensus 96 lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~---a~g--F 170 (263)
T CHL00200 96 IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA---APG--C 170 (263)
T ss_pred EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh---CCC--c
Confidence 665543322 2444433333321 3445566777644455544433 333 3
Q ss_pred EEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccc
Q 016250 213 VLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMK 268 (392)
Q Consensus 213 VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~ 268 (392)
|. .++-=++|. ....+..+.++.++.|.+..++|+- ||.|=..=+..+
T Consensus 171 IY-~vS~~GvTG----~~~~~~~~~~~~i~~ir~~t~~Pi~---vGFGI~~~e~~~ 218 (263)
T CHL00200 171 IY-LVSTTGVTG----LKTELDKKLKKLIETIKKMTNKPII---LGFGISTSEQIK 218 (263)
T ss_pred EE-EEcCCCCCC----CCccccHHHHHHHHHHHHhcCCCEE---EECCcCCHHHHH
Confidence 32 223233332 1235666788899999998888875 588865433333
No 63
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.53 E-value=94 Score=33.00 Aligned_cols=137 Identities=18% Similarity=0.309 Sum_probs=87.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCc---C--CHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFC---Y--GFEEVL 175 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c---~--G~egVL 175 (392)
-++.+|+|.|+|+.. +-|- ...|--+.|-- ++ |-..-.....-|..|-++-.+| . -+..|+
T Consensus 428 kr~~laldvs~sm~~--------rv~~---s~ln~reaaa~-m~--linlhnead~~~vaf~d~lte~pftkd~kigqv~ 493 (598)
T KOG4465|consen 428 KRFCLALDVSASMNQ--------RVLG---SILNAREAAAA-MC--LINLHNEADSRCVAFCDELTECPFTKDMKIGQVL 493 (598)
T ss_pred ceEEEEEecchhhhh--------hhhc---cccchHHHHhh-hh--eeeeccccceeEEEeccccccCCCcccccHHHHH
Confidence 478999999999942 2222 12343343322 22 2233345566789999885444 2 367777
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC-cEE
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP-LSI 254 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP-LSI 254 (392)
++-. ++.++|..+=-|+| .+++++.+.-|.+|+||.+.. .|+.-| .+.++.-++|+..| --+
T Consensus 494 ~~~n----ni~~g~tdcglpm~-----wa~ennlk~dvfii~tdndt~------ageihp--~~aik~yrea~~i~dakl 556 (598)
T KOG4465|consen 494 DAMN----NIDAGGTDCGLPMI-----WAQENNLKADVFIIFTDNDTF------AGEIHP--AEAIKEYREAMDIHDAKL 556 (598)
T ss_pred HHHh----cCCCCCCccCCcee-----ehhhcCCCccEEEEEecCccc------ccccCH--HHHHHHHHHhcCCCcceE
Confidence 7533 34455555545544 356777889999999996432 344444 57788889999998 667
Q ss_pred EEEecccCCccccc
Q 016250 255 VLVGVGDGPWDMMK 268 (392)
Q Consensus 255 I~VGVGdg~F~~M~ 268 (392)
|+.|+-..+|..-.
T Consensus 557 iv~amqa~d~siad 570 (598)
T KOG4465|consen 557 IVCAMQANDFSIAD 570 (598)
T ss_pred EEEEeecCCceecC
Confidence 88888887876543
No 64
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=58.17 E-value=94 Score=30.37 Aligned_cols=155 Identities=24% Similarity=0.257 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCC-CCCHHHHHHH------HHhhcccccCCC-Cccce
Q 016250 87 DQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAIS------IIGKTLAVFDED-NLIPC 158 (392)
Q Consensus 87 d~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~-~~N~YqqAI~------~Ig~vl~~yDdD-~~ipv 158 (392)
.++..+|.++|... +-+||=||.-.-+ |+ ...-+++||+ .+.+++...-.. -.+|+
T Consensus 27 ~~~~~~l~~~Gad~--iElGiPfsDP~aD--------------GpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~pl 90 (256)
T TIGR00262 27 LEIIKTLIEAGADA--LELGVPFSDPLAD--------------GPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPI 90 (256)
T ss_pred HHHHHHHHHcCCCE--EEECCCCCCCCCc--------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 45567888999984 6778877754421 21 1233455543 444444444322 24665
Q ss_pred eecCCCCC-CcCCHHHHHHHHHhh--------------------------cCceeecCCCChHHHHHHHHHHHHhcCCcc
Q 016250 159 YGFGDGGR-FCYGFEEVLSRYREI--------------------------VPNLKLAGPTSFAPVIEMAMSIVEQSGGQY 211 (392)
Q Consensus 159 fGFGa~~~-~c~G~egVL~aYr~~--------------------------l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y 211 (392)
..++-.++ .-.|++..++.+.++ +.-+.+-.|+.=..-|+ .+++...+
T Consensus 91 v~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~---~i~~~~~g-- 165 (256)
T TIGR00262 91 GLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLK---QIAEKSQG-- 165 (256)
T ss_pred EEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHH---HHHHhCCC--
Confidence 56555444 223555555444442 11123334433222222 22333322
Q ss_pred EEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccccc
Q 016250 212 HVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEF 270 (392)
Q Consensus 212 ~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~L 270 (392)
+|+++=.. ++|. ...++.++..+.++.|++..+.| |+||.|=..-+..+++
T Consensus 166 fiy~vs~~-G~TG----~~~~~~~~~~~~i~~lr~~~~~p---i~vgfGI~~~e~~~~~ 216 (256)
T TIGR00262 166 FVYLVSRA-GVTG----ARNRAASALNELVKRLKAYSAKP---VLVGFGISKPEQVKQA 216 (256)
T ss_pred CEEEEECC-CCCC----CcccCChhHHHHHHHHHhhcCCC---EEEeCCCCCHHHHHHH
Confidence 33322223 3442 12246677889999999988887 7789887766666554
No 65
>PLN02591 tryptophan synthase
Probab=51.95 E-value=1e+02 Score=30.28 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=85.3
Q ss_pred hHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCC-CCCHHHHHHH------HHhhcccccCCCCccce
Q 016250 86 LDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAIS------IIGKTLAVFDEDNLIPC 158 (392)
Q Consensus 86 ld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~-~~N~YqqAI~------~Ig~vl~~yDdD~~ipv 158 (392)
.-++..+|.++|... +-+||=||.-.- -|+ ..+-+++|++ .+.+++..+-.+-.+|+
T Consensus 18 ~~~~~~~l~~~Gad~--iElGiPfSDP~a--------------DGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ 81 (250)
T PLN02591 18 TAEALRLLDACGADV--IELGVPYSDPLA--------------DGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPI 81 (250)
T ss_pred HHHHHHHHHHCCCCE--EEECCCCCCCcc--------------cCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 345567888999983 677777775442 122 1344566655 45555555544445676
Q ss_pred eecCCCCCCcC-CH----------------------HH---HHHHHHh-hcCceeecCCCChHHHHHHHHHHHHhcCC-c
Q 016250 159 YGFGDGGRFCY-GF----------------------EE---VLSRYRE-IVPNLKLAGPTSFAPVIEMAMSIVEQSGG-Q 210 (392)
Q Consensus 159 fGFGa~~~~c~-G~----------------------eg---VL~aYr~-~l~~v~LsGPT~FaPVI~~ai~ive~s~~-~ 210 (392)
.-|+--++..+ |+ ++ +.++-++ -+..|.|-.||.=..-|+++.+. +.+ -
T Consensus 82 ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~---~~gFI 158 (250)
T PLN02591 82 VLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA---SEGFV 158 (250)
T ss_pred EEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh---CCCcE
Confidence 66654432111 22 22 2222222 23455667777765555555443 333 2
Q ss_pred cEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccccc
Q 016250 211 YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEF 270 (392)
Q Consensus 211 Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~L 270 (392)
|.| +--++|.+ +..+..+.++.++.|.+.++.|+- ||.|=..-+..+++
T Consensus 159 Y~V----s~~GvTG~----~~~~~~~~~~~i~~vk~~~~~Pv~---vGFGI~~~e~v~~~ 207 (250)
T PLN02591 159 YLV----SSTGVTGA----RASVSGRVESLLQELKEVTDKPVA---VGFGISKPEHAKQI 207 (250)
T ss_pred EEe----eCCCCcCC----CcCCchhHHHHHHHHHhcCCCceE---EeCCCCCHHHHHHH
Confidence 332 22233321 234566788889999998888864 69887755555443
No 66
>PLN00191 enolase
Probab=51.24 E-value=1.4e+02 Score=31.89 Aligned_cols=150 Identities=14% Similarity=0.242 Sum_probs=79.7
Q ss_pred cccccchHHHHHHHHHcCCceeceEEEEeccCCCCcC-CCCCCCC--CCccccCCCCCHHHHHHHHHhhcccccCCCCcc
Q 016250 80 ADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWT-GKRSFNR--RSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLI 156 (392)
Q Consensus 80 ~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~t-g~~s~~~--~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~i 156 (392)
.++-.-||.|.+|+.++|++ -++.+|||+-+|--+. +. .|.- +.-...+...-..+++|+.+-.++..|+
T Consensus 240 ~~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~-~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~----- 312 (457)
T PLN00191 240 QDNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDK-KYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP----- 312 (457)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCC-ceEeeccccCCCcccccCHHHHHHHHHHHhhcCC-----
Confidence 34446688999999999999 4799999999985442 10 1100 0000000111245888888888887665
Q ss_pred ceeecCCCCCC-cCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCCh
Q 016250 157 PCYGFGDGGRF-CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSP 235 (392)
Q Consensus 157 pvfGFGa~~~~-c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~ 235 (392)
+.-+ .+|. ..+++++-+.-++ ..+.+.|--.|.--.+.+.+..+...-....+=+---|.|+
T Consensus 313 -I~~I--EDPl~~~D~eg~~~Lt~~--~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGIT------------ 375 (457)
T PLN00191 313 -IVSI--EDPFDQDDWEHWAKLTSL--EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVT------------ 375 (457)
T ss_pred -cEEE--ECCCCcccHHHHHHHHcc--CCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHH------------
Confidence 2222 1222 2566666554333 44566664333221233333333322222222233346665
Q ss_pred hHHHHHHHHHHhcCCCcEEEE
Q 016250 236 QEQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 236 d~~~TidaIv~AS~lPLSII~ 256 (392)
++++++.-|...-+.+++
T Consensus 376 ---ea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 376 ---ESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred ---HHHHHHHHHHHCCCEEEe
Confidence 566766666666666554
No 67
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.42 E-value=1.3e+02 Score=35.74 Aligned_cols=138 Identities=15% Similarity=0.271 Sum_probs=82.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----CCCcCC-----H
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG----GRFCYG-----F 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~----~~~c~G-----~ 171 (392)
-.++|-+|.++|+. | ..+|-. -+.+..|..+ +-+|..+-+.-|+-. .+.|.| -
T Consensus 226 KdiviLlD~SgSm~--g------~~~~la-------k~tv~~iLdt---Ls~~Dfvni~tf~~~~~~v~pc~~~~lvqAt 287 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--G------LRLDLA-------KQTVNEILDT---LSDNDFVNILTFNSEVNPVSPCFNGTLVQAT 287 (1104)
T ss_pred cceEEEEecccccc--c------hhhHHH-------HHHHHHHHHh---cccCCeEEEEeeccccCcccccccCceeecc
Confidence 46889999999984 2 233322 2344445444 446666777777765 222322 2
Q ss_pred HHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc---------CCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS---------GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 242 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s---------~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tid 242 (392)
-.-.+..++.+..+...|-++|.-+.+.|-+..... +..+.+.++||||...+ -++..+
T Consensus 288 ~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~~If~ 355 (1104)
T KOG2353|consen 288 MRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AKEIFE 355 (1104)
T ss_pred hHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc------------HHHHHH
Confidence 333445566677777889999999999998775432 12568889999998765 233333
Q ss_pred HHHHh-cCCCcEEEEEecccCCccccc
Q 016250 243 AIVKA-SELPLSIVLVGVGDGPWDMMK 268 (392)
Q Consensus 243 aIv~A-S~lPLSII~VGVGdg~F~~M~ 268 (392)
.-..- -..=+|=.+||-+..+|+.++
T Consensus 356 ~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 356 KYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred hhccCCCceEEEEEEecccccccccch
Confidence 22221 112345556666666666644
No 68
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.99 E-value=95 Score=30.70 Aligned_cols=86 Identities=19% Similarity=0.419 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHhhcCceeec-------CCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCc--cccccccccCCCChhH
Q 016250 169 YGFEEVLSRYREIVPNLKLA-------GPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQ--VTRSVDTVRGCLSPQE 237 (392)
Q Consensus 169 ~G~egVL~aYr~~l~~v~Ls-------GPT~FaPVI~~ai~ive~s~--~~Y~VLLIITDG~--Itd~vd~~~~~~~~d~ 237 (392)
.|+.+++..-++..|.+.+. |-..-..|++ +++.+.+.+ ..|=| |||+-|+ +.|. ..+ ++
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~-al~~~~~~~~~~~~Dv-iii~RGGGs~eDL-----~~F--N~ 96 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVS-ALRKANEMGQADDFDV-IIIIRGGGSIEDL-----WAF--ND 96 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHH-HHHHHHhccccccccE-EEEecCCCChHHh-----ccc--Ch
Confidence 35667766666666644321 3333333444 334443332 24555 5555664 3331 111 34
Q ss_pred HHHHHHHHHhcCCCcEEEEEecccC-Ccccc
Q 016250 238 QKTVDAIVKASELPLSIVLVGVGDG-PWDMM 267 (392)
Q Consensus 238 ~~TidaIv~AS~lPLSII~VGVGdg-~F~~M 267 (392)
++..+||.+ |..| ||.|||-+ ||...
T Consensus 97 e~varai~~-~~~P---visaIGHe~D~ti~ 123 (319)
T PF02601_consen 97 EEVARAIAA-SPIP---VISAIGHETDFTIA 123 (319)
T ss_pred HHHHHHHHh-CCCC---EEEecCCCCCchHH
Confidence 666777764 4567 78888854 55433
No 69
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=45.59 E-value=34 Score=34.41 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=13.5
Q ss_pred eeecCCCCCCcCCHHHHHHHHHhh
Q 016250 158 CYGFGDGGRFCYGFEEVLSRYREI 181 (392)
Q Consensus 158 vfGFGa~~~~c~G~egVL~aYr~~ 181 (392)
.|-||.......+++.....|.+.
T Consensus 156 ~wv~~~~~~~~~~~~~ae~~Fn~l 179 (289)
T PF07466_consen 156 YWVYGSSESQQRSLESAEAQFNQL 179 (289)
T ss_pred ceEEEeeccccCCHHHHHHHHHHH
Confidence 455655543355666666665553
No 70
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=45.31 E-value=84 Score=33.10 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=49.4
Q ss_pred CHHHHHHHHHh----hcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 170 GFEEVLSRYRE----IVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 170 G~egVL~aYr~----~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
++.+.+..++. .+-.|++.. -++.-+.+++..+.++.|-.- +.||++||... +++++.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld--------------e~~i~~l~ 311 (405)
T COG1488 248 AFLNAIKVAKALGDKRLDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD--------------EKIIALLR 311 (405)
T ss_pred HHHHhHHHHHhcccccceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch--------------HHHHHHHH
Confidence 34444444553 345566654 578888888888888876543 88999999764 34455444
Q ss_pred HhcCCCcEEEEEecccC
Q 016250 246 KASELPLSIVLVGVGDG 262 (392)
Q Consensus 246 ~AS~lPLSII~VGVGdg 262 (392)
+...+ +..-|||..
T Consensus 312 -~~g~~--~d~FGvGT~ 325 (405)
T COG1488 312 -AFGAR--NDAFGVGTN 325 (405)
T ss_pred -HhCCC--ccEeccchh
Confidence 45666 888888874
No 71
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=44.97 E-value=44 Score=32.59 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC---CcEEEEEeccc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL---PLSIVLVGVGD 261 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l---PLSII~VGVGd 261 (392)
-|++..+++.++++++..|++=+++||+|+-. .+-....|.-|.+. ++.|-.+.=|.
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh-----------~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSH-----------IDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCcccc-----------HHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 37899999999998889999999999999853 33444444444443 35566665553
No 72
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=44.63 E-value=72 Score=31.54 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCccEEEEE--EeCCccccccccccCCCChhHHHHHHHHHHhcCCC----cEEEEEecccCCcccc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLI--IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP----LSIVLVGVGDGPWDMM 267 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLI--ITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP----LSII~VGVGdg~F~~M 267 (392)
+-+++++++..++......|.++ ..-|.-. ..+.++||..+...+ +=+|||+=|+|.++.|
T Consensus 25 gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A-------------~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL 91 (319)
T PF02601_consen 25 GAAIQDFLRTLKRRNPIVEIILYPASVQGEGA-------------AASIVSALRKANEMGQADDFDVIIIIRGGGSIEDL 91 (319)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccccch-------------HHHHHHHHHHHHhccccccccEEEEecCCCChHHh
Confidence 45677777777765433444443 2233222 578999999998765 8999999999999999
Q ss_pred cccCCC
Q 016250 268 KEFDDN 273 (392)
Q Consensus 268 ~~LDd~ 273 (392)
--||+.
T Consensus 92 ~~FN~e 97 (319)
T PF02601_consen 92 WAFNDE 97 (319)
T ss_pred cccChH
Confidence 999874
No 73
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=44.57 E-value=1.7e+02 Score=30.64 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=42.5
Q ss_pred ccccchHHHHHHHHHcCCce-eceEEEEeccCCCCcCCCCCCCCCCcccc--CCCCCHHHHHHHHHhhcccccC
Q 016250 81 DDYKSLDQVTEALARAGLES-SNLIVGIDFTKSNEWTGKRSFNRRSLHYI--GDGLNPYEQAISIIGKTLAVFD 151 (392)
Q Consensus 81 ~~yssld~V~~aL~~~Gles-~nliVaIDFT~SN~~tg~~s~~~~SLH~i--~~~~N~YqqAI~~Ig~vl~~yD 151 (392)
++-.-|+.|.+|++++|++- -.+.++||+-+|--|... ..++. .+..-..++||+.+.++++.|+
T Consensus 211 ~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~------~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 211 SNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEG------KYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccC------cceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 34445777999999999982 279999999887544211 11121 1111234889998888888776
No 74
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=44.21 E-value=2.6e+02 Score=29.99 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCC-ChhHHHHHHHHHHhcCCCcEEEEEe---cccCCcc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCL-SPQEQKTVDAIVKASELPLSIVLVG---VGDGPWD 265 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~-~~d~~~TidaIv~AS~lPLSII~VG---VGdg~F~ 265 (392)
.-||+.+++.+++.+ ..||++-|-.||+. +-....+ ..|..+.+..|.+.-.+|..-||.| +|-.+|.
T Consensus 27 p~VieAAl~~a~~~~--~pvLiEAT~NQVnq--~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq 98 (426)
T PRK15458 27 PLVLEAAIRYALAND--SPLLIEATSNQVDQ--FGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQ 98 (426)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCcccc
Confidence 568999999998865 58888889888864 2222233 4567889999999999999777776 3444576
No 75
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=41.55 E-value=3e+02 Score=29.46 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCC-ChhHHHHHHHHHHhcCCCcEEEEEe---cccCCcc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCL-SPQEQKTVDAIVKASELPLSIVLVG---VGDGPWD 265 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~-~~d~~~TidaIv~AS~lPLSII~VG---VGdg~F~ 265 (392)
.-||+.+++.+++.+ ..||++-|-.||+. +-....+ ..|..+.+..|.+.-.+|..-||.| +|-.+|.
T Consensus 23 p~VieAAl~~a~~~~--~pvLiEAT~NQVnq--~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq 94 (420)
T TIGR02810 23 PLVLEAAIRRARASG--TPVLIEATSNQVNQ--FGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQ 94 (420)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCcccc
Confidence 568999999998865 68888899888864 2222233 4567888999999999999777776 3444577
No 76
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=41.38 E-value=83 Score=30.89 Aligned_cols=75 Identities=27% Similarity=0.332 Sum_probs=50.3
Q ss_pred chHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC
Q 016250 85 SLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG 164 (392)
Q Consensus 85 sld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~ 164 (392)
+|++| ++|.++|.+ |||+|.|...... +..+..|.. ..| --++-+
T Consensus 87 tlkeV-d~L~~~Ga~----IIA~DaT~R~RP~-----------------~~~~~~i~~-----~k~-----~~~l~M--- 131 (229)
T COG3010 87 TLKEV-DALAEAGAD----IIAFDATDRPRPD-----------------GDLEELIAR-----IKY-----PGQLAM--- 131 (229)
T ss_pred cHHHH-HHHHHCCCc----EEEeecccCCCCc-----------------chHHHHHHH-----hhc-----CCcEEE---
Confidence 78888 789999999 6999999876421 123344333 111 112223
Q ss_pred CCCcCCHHHHHHHHHhhcCce--eecCCCChHH
Q 016250 165 GRFCYGFEEVLSRYREIVPNL--KLAGPTSFAP 195 (392)
Q Consensus 165 ~~~c~G~egVL~aYr~~l~~v--~LsGPT~FaP 195 (392)
-.|..+||.+.+.+--+--| .|+|.|.+.+
T Consensus 132 -AD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~ 163 (229)
T COG3010 132 -ADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTE 163 (229)
T ss_pred -eccCCHHHHHHHHHcCCcEEecccccccCCCC
Confidence 24889999999998877655 5888887654
No 77
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=41.11 E-value=1.7e+02 Score=30.95 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=58.0
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC------CCcCCHHHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG------RFCYGFEEVL 175 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~------~~c~G~egVL 175 (392)
.++|-+|.|+||.|- . +-|-.-+.+ +.+.+..- -+|-||..- -.-.+.+..+
T Consensus 220 ~lvvL~DVSGSm~~y-----s-----------~~~L~l~hA---l~q~~~R~---~~F~F~TRLt~vT~~l~~rD~~~Al 277 (395)
T COG3552 220 PLVVLCDVSGSMSGY-----S-----------RIFLHLLHA---LRQQRSRV---HVFLFGTRLTRVTHMLRERDLEDAL 277 (395)
T ss_pred CeEEEEecccchhhh-----H-----------HHHHHHHHH---HHhcccce---eEEEeechHHHHHHHhccCCHHHHH
Confidence 479999999999641 1 222322222 24455433 389999981 1235677777
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhcC-CccEEEEEEeCCcccc
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG-GQYHVLLIIADGQVTR 224 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~-~~Y~VLLIITDG~Itd 224 (392)
.+-...+. ..+|-|-..+.+.+-.+--..+. ..=-++||+|||--.|
T Consensus 278 ~~~~a~v~--dw~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd 325 (395)
T COG3552 278 RRLSAQVK--DWDGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRD 325 (395)
T ss_pred HHHHhhcc--cccCCcchhHHHHHHHccccccccCCceEEEEEecccccC
Confidence 65444332 26788888877766554422221 1225679999996443
No 78
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=40.78 E-value=1.7e+02 Score=30.79 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEe---cccCCccccccc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVG---VGDGPWDMMKEF 270 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VG---VGdg~F~~M~~L 270 (392)
.=||+.+++....+. -.||+=-|..||+. ...--|--..|....+.+|.+.-.+|..-+|.| +|-.+|..+.
T Consensus 27 PlViEAAl~~a~~~~--~~vLIEAT~NQVnq-~GGYTGMTP~DFr~fV~aiA~~~gfp~e~liLGGDHLGPN~Wq~~p-- 101 (426)
T COG4573 27 PLVIEAALRFARASQ--TPVLIEATSNQVNQ-FGGYTGMTPADFRGFVFAIADKLGFPRERLILGGDHLGPNPWQHLP-- 101 (426)
T ss_pred HHHHHHHHHHHhccC--CceEeecccccccc-cCCcCCCChHHHHHHHHHHHHHhCCcHHHHhccCCcCCCCccccCC--
Confidence 348999999887764 35666677777754 111112335678999999999999999999988 4555554321
Q ss_pred CCCCCCccccceecccchhhccccCCcchhHHHHHHHHHHHhHHHHHHHHHhc----ccCCCCCCCCCCCCCCC
Q 016250 271 DDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELN----ILGRRKGNVPERVALPP 340 (392)
Q Consensus 271 Dd~l~~R~~DNvqFV~f~di~~kn~~~~~~d~~lA~~aL~EIP~Ql~ay~~lg----iL~~~~~~~~~~~~~~~ 340 (392)
|.++|.+--.-+++|.+.| -|.+.++-+-+++||++
T Consensus 102 ----------------------------------A~eAM~ka~~mv~AYv~AGF~KIHLDaSM~CA~dp~pL~d 141 (426)
T COG4573 102 ----------------------------------AAEAMAKADDLVKAYVAAGFTKIHLDASMSCAGDPIPLDD 141 (426)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHcCceeeecccccccCCCCCCCCc
Confidence 2344444455567777776 46777888888887754
No 79
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=40.06 E-value=2.3e+02 Score=26.80 Aligned_cols=149 Identities=16% Similarity=0.224 Sum_probs=78.0
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC--CCCccceeecCCC---------------
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD--EDNLIPCYGFGDG--------------- 164 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD--dD~~ipvfGFGa~--------------- 164 (392)
.+++.||.|...-. .+..+.+++.|-.+|.... ++-+|-+.-|+..
T Consensus 5 ~y~FvID~s~~av~-----------------~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~ 67 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ-----------------SGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQM 67 (243)
T ss_dssp EEEEEEE-SHHHHH-----------------HTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEE
T ss_pred EEEEEEECchhhhh-----------------ccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcc
Confidence 47889998854110 2345788888888888777 7667766666655
Q ss_pred -------C---C----------Cc-CCHHHHHHHHHhhcCce-eecCCCChHHHHHHHHHHHH--hcCCccEEEEEEeCC
Q 016250 165 -------G---R----------FC-YGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVE--QSGGQYHVLLIIADG 220 (392)
Q Consensus 165 -------~---~----------~c-~G~egVL~aYr~~l~~v-~LsGPT~FaPVI~~ai~ive--~s~~~Y~VLLIITDG 220 (392)
+ + .| .-++++|+.-.+..+.. .-....++...|+.|..+.+ ..+| .|++|+ .|
T Consensus 68 ~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~-s~ 144 (243)
T PF04811_consen 68 IVVSDLDDPFIPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFT-SG 144 (243)
T ss_dssp EEEHHTTSHHSSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEE-SS
T ss_pred cchHHHhhcccCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEe-cc
Confidence 0 1 11 12555666555544433 13345899999999999988 4454 554554 44
Q ss_pred cc--------ccccccccCC--------CChhHHHHHHHHHHhcCCCcEEEEEecccC--Cccccccc
Q 016250 221 QV--------TRSVDTVRGC--------LSPQEQKTVDAIVKASELPLSIVLVGVGDG--PWDMMKEF 270 (392)
Q Consensus 221 ~I--------td~vd~~~~~--------~~~d~~~TidaIv~AS~lPLSII~VGVGdg--~F~~M~~L 270 (392)
-. ....++.+.. +.++.+--.+.-.+++..-+++=+.-.+.. ++..|..|
T Consensus 145 ~pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l 212 (243)
T PF04811_consen 145 PPTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPL 212 (243)
T ss_dssp ---SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHH
T ss_pred CCCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHH
Confidence 32 2211111111 111111234555667788888877777764 34444444
No 80
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=39.62 E-value=30 Score=37.30 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=45.4
Q ss_pred EEE-EEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCcccccccCCCCCCcccc-ceecccchh
Q 016250 212 HVL-LIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFD-NFQFVNFTE 289 (392)
Q Consensus 212 ~VL-LIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~LDd~l~~R~~D-NvqFV~f~d 289 (392)
.|. |+.|||.|++- .+.+.-.-++++++.|.+. +.|.=|++ .=-+-.-..-++|-..+. ..++ .|..|+..+
T Consensus 146 tIgivVtTDgsi~dI---~Re~y~~aEe~~i~eLk~~-~kPfiivl-N~~dp~~~et~~l~~~l~-eky~vpvl~v~c~~ 219 (492)
T TIGR02836 146 TIGVVVTTDGTITDI---PREDYVEAEERVIEELKEL-NKPFIILL-NSTHPYHPETEALRQELE-EKYDVPVLAMDVES 219 (492)
T ss_pred cEEEEEEcCCCcccc---ccccchHHHHHHHHHHHhc-CCCEEEEE-ECcCCCCchhHHHHHHHH-HHhCCceEEEEHHH
Confidence 554 55559988863 3455566688888888764 66754443 322210011111111111 1122 234555555
Q ss_pred hccccCCcchhHHHHHHHHHHHhH
Q 016250 290 IMSKNHDQTRKETEFALSALMEIP 313 (392)
Q Consensus 290 i~~kn~~~~~~d~~lA~~aL~EIP 313 (392)
+... .=..+.+++|.|||
T Consensus 220 l~~~------DI~~il~~vL~EFP 237 (492)
T TIGR02836 220 MRES------DILSVLEEVLYEFP 237 (492)
T ss_pred cCHH------HHHHHHHHHHhcCC
Confidence 4321 12457788998875
No 81
>PTZ00081 enolase; Provisional
Probab=38.36 E-value=3.4e+02 Score=28.91 Aligned_cols=149 Identities=16% Similarity=0.222 Sum_probs=79.0
Q ss_pred ccccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCC-CCCCCCCccccC---C--CCCHHHHHHHHHhhcccccCCCC
Q 016250 81 DDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGK-RSFNRRSLHYIG---D--GLNPYEQAISIIGKTLAVFDEDN 154 (392)
Q Consensus 81 ~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~-~s~~~~SLH~i~---~--~~N~YqqAI~~Ig~vl~~yDdD~ 154 (392)
+.-.-|+.|.+|.+++|++ -.+.+|||+-+|.-|..+ ..| .+.+.. . ..-.-++.|+-+.+.++.|+
T Consensus 226 ~~eeal~ll~eAi~~ag~~-~~v~i~lD~Aase~~~~~~~~Y---~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~--- 298 (439)
T PTZ00081 226 DPEEALDLLVEAIKKAGYE-GKVKICMDVAASEFYDKEKKVY---DLDFKNPNNDKSNKLTGEELVELYLDLVKKYP--- 298 (439)
T ss_pred CHHHHHHHHHHHHHHcCCc-CceEEEEehhhhhhhhccCCce---eeeeccccCccccccCHHHHHHHHHHHHhcCC---
Confidence 4445678889999999999 479999999988654210 011 111011 0 12345777888888888875
Q ss_pred ccceeecCCCCCCc-CCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCC
Q 016250 155 LIPCYGFGDGGRFC-YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCL 233 (392)
Q Consensus 155 ~ipvfGFGa~~~~c-~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~ 233 (392)
++-+ .+|.. .+++++-+.-+++-..+.+.|--.|.-=.+.+.+..+...-....+=+---|.|+
T Consensus 299 ---I~~I--EDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGIT---------- 363 (439)
T PTZ00081 299 ---IVSI--EDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVT---------- 363 (439)
T ss_pred ---cEEE--EcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHH----------
Confidence 2223 12222 4556655543333235666665443221233333333322122211122346665
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEE
Q 016250 234 SPQEQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 234 ~~d~~~TidaIv~AS~lPLSII~ 256 (392)
++++++.-|...-+.+++
T Consensus 364 -----e~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 364 -----EAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred -----HHHHHHHHHHHcCCcEEE
Confidence 566766666666666655
No 82
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=37.32 E-value=84 Score=32.70 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCcEEEEEecccCCcccccccCC
Q 016250 238 QKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 238 ~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~LDd 272 (392)
.++++||..+....+=+||||=|+|.++.|--||+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 44555555555444455555555555555555554
No 83
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=36.58 E-value=4e+02 Score=28.62 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCC-ChhHHHHHHHHHHhcCCCcEEEEEe---cccCCcccc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCL-SPQEQKTVDAIVKASELPLSIVLVG---VGDGPWDMM 267 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~-~~d~~~TidaIv~AS~lPLSII~VG---VGdg~F~~M 267 (392)
.-||+.+++.+++.+ ..||++-|-.||+. +-....+ ..|..+.+..|.+.-.+|..-||.| +|-.+|..+
T Consensus 24 p~VieAAl~~a~~~~--~pvLiEAT~NQVdq--~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~ 97 (421)
T PRK15052 24 PLVIEAALAFDLNST--RKVLIEATSNQVNQ--FGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQQE 97 (421)
T ss_pred HHHHHHHHHHHhhcC--CcEEEEeccccccc--cCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCC
Confidence 568999999998865 68888899888864 2222233 4567888999999999999777766 344447655
No 84
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.12 E-value=3.5e+02 Score=26.67 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=42.5
Q ss_pred CceeecCCCChHHHHHHHHHHHHhcCC-ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccc
Q 016250 183 PNLKLAGPTSFAPVIEMAMSIVEQSGG-QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 261 (392)
Q Consensus 183 ~~v~LsGPT~FaPVI~~ai~ive~s~~-~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGd 261 (392)
..|.|..||.=..-|+.+.+. +.+ -|.|-++=+.|.- ..++.+..+.++.|.++++.|+ +||.|=
T Consensus 144 ~~I~lvap~t~~eri~~i~~~---s~gfIY~vs~~GvTG~~--------~~~~~~~~~~i~~vk~~~~~pv---~vGfGI 209 (258)
T PRK13111 144 DLIFLVAPTTTDERLKKIASH---ASGFVYYVSRAGVTGAR--------SADAADLAELVARLKAHTDLPV---AVGFGI 209 (258)
T ss_pred cEEEEeCCCCCHHHHHHHHHh---CCCcEEEEeCCCCCCcc--------cCCCccHHHHHHHHHhcCCCcE---EEEccc
Confidence 455667777755555554433 434 2333332223321 2345668889999999998886 568887
Q ss_pred CCcccccc
Q 016250 262 GPWDMMKE 269 (392)
Q Consensus 262 g~F~~M~~ 269 (392)
.+=+..++
T Consensus 210 ~~~e~v~~ 217 (258)
T PRK13111 210 STPEQAAA 217 (258)
T ss_pred CCHHHHHH
Confidence 55444443
No 85
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=34.93 E-value=1.2e+02 Score=30.09 Aligned_cols=169 Identities=21% Similarity=0.374 Sum_probs=100.2
Q ss_pred cccchHHHHHHHHHcCCce-----eceEEEEeccCCCCcCCCCCCCCCCccccCC----CCCHHHHHHHHHhhcccccCC
Q 016250 82 DYKSLDQVTEALARAGLES-----SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD----GLNPYEQAISIIGKTLAVFDE 152 (392)
Q Consensus 82 ~yssld~V~~aL~~~Gles-----~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~----~~N~YqqAI~~Ig~vl~~yDd 152 (392)
.+.+=.++-..|+..|.+. +++|=|+.|-+=-+.-.+-+.+-++|- +|. ..|+|++++++|-..+-+...
T Consensus 58 ~~dTP~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lk-ig~PlLy~k~DYe~~v~aik~~~ppl~k 136 (265)
T COG4822 58 DFDTPIQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLK-IGRPLLYYKNDYEICVEAIKDQIPPLNK 136 (265)
T ss_pred ccCCHHHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheee-cCCceeechhhHHHHHHHHHHhcCCcCc
Confidence 4566667777788888774 444555554320000000000001221 221 249999999999999999999
Q ss_pred CCccceeecCCCCCCc---CCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCC-ccEEE-EEEeCCc--cccc
Q 016250 153 DNLIPCYGFGDGGRFC---YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG-QYHVL-LIIADGQ--VTRS 225 (392)
Q Consensus 153 D~~ipvfGFGa~~~~c---~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~-~Y~VL-LIITDG~--Itd~ 225 (392)
|...=..|-|..++.. .=++-++..|+- -.|.+.. +.=-|-+..+++..++++- ..++. |.++-|. +.|+
T Consensus 137 ~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f--~~v~v~~-ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDM 213 (265)
T COG4822 137 DEILVLMGHGTDHHSNAAYACLDHVLDEYGF--DNVFVAA-VEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDM 213 (265)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHhcCC--CceEEEE-ecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhh
Confidence 9888888888874321 125556654432 2222221 2224677888888887753 34443 5566674 3342
Q ss_pred cccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccC
Q 016250 226 VDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDG 262 (392)
Q Consensus 226 vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg 262 (392)
-.|.+.+-+.|.++..++.-..+=|+|.-
T Consensus 214 --------asddedswk~il~~~G~~v~~~l~GLGE~ 242 (265)
T COG4822 214 --------ASDDEDSWKNILEKNGFKVEVYLHGLGEN 242 (265)
T ss_pred --------cccchHHHHHHHHhCCceeEEEeecCCCc
Confidence 12234677788888899999999999963
No 86
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=34.56 E-value=2.6e+02 Score=30.04 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC
Q 016250 171 FEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 171 ~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
+.+++++-+.--+.=-++==..=.-||+.+++.+++.+ ..||++=|-.||+.-- ---|--..|..+.+..|.+.-.+
T Consensus 4 l~~lv~~~k~G~~~gI~SVCsahp~VieAAl~~a~~~~--~pvLiEAT~NQVnq~G-GYTGmtP~dF~~~V~~iA~~~g~ 80 (424)
T PF08013_consen 4 LKELVKRHKAGEPVGIYSVCSAHPLVIEAALERAKEDD--SPVLIEATSNQVNQFG-GYTGMTPADFRDFVREIADEVGF 80 (424)
T ss_dssp -HHHHHHHHTT--B-EEEE----HHHHHHHHHHCCCS---S-EEEEEETTTCSTT--TTTTB-HHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHhCCCCCceEEecCCCHHHHHHHHHHHHhcC--CeEEEEeccccccccC-CcCCCCHHHHHHHHHHHHHHcCC
Confidence 67777766654332222211233569999999988764 6888888888887521 11123356788899999999999
Q ss_pred CcEEEEEe---cccCCcc
Q 016250 251 PLSIVLVG---VGDGPWD 265 (392)
Q Consensus 251 PLSII~VG---VGdg~F~ 265 (392)
|..-||.| +|-..|.
T Consensus 81 ~~~~iiLGGDHLGP~~w~ 98 (424)
T PF08013_consen 81 PRDRIILGGDHLGPNPWQ 98 (424)
T ss_dssp -GGGEEEEEEEESSCCCT
T ss_pred chhhEEecCCCCCccccc
Confidence 99744444 4555554
No 87
>PRK00035 hemH ferrochelatase; Reviewed
Probab=34.32 E-value=2.1e+02 Score=28.56 Aligned_cols=166 Identities=21% Similarity=0.331 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcccccCCCCccceeecCCC---CCCcCCHHHHHHHHHhhcCceeecCCC-ChHHHHHHHHHHHH----hc
Q 016250 136 YEQAISIIGKTLAVFDEDNLIPCYGFGDG---GRFCYGFEEVLSRYREIVPNLKLAGPT-SFAPVIEMAMSIVE----QS 207 (392)
Q Consensus 136 YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~---~~~c~G~egVL~aYr~~l~~v~LsGPT-~FaPVI~~ai~ive----~s 207 (392)
.+.||+.+.+ ..++.--.+|+|=+-+. ...++-+.+.++.++. ...+.+..|- .-...|+.+++.++ +.
T Consensus 107 i~eal~~l~~--~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~-~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~~ 183 (333)
T PRK00035 107 IEEALEALKA--DGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL-QPEIRFIRSYYDHPGYIEALAESIREALAKH 183 (333)
T ss_pred HHHHHHHHHh--cCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC-CCcEEEeCCccCCHHHHHHHHHHHHHHHHhc
Confidence 3667777633 34555556777744332 1122233444444432 2344443221 22234444443332 21
Q ss_pred CC--ccEEEEEEeCCccccccccccC-CCChhHHHHHHHHHHhcCC---CcEEEEEe-cccCCc------ccccccCCCC
Q 016250 208 GG--QYHVLLIIADGQVTRSVDTVRG-CLSPQEQKTVDAIVKASEL---PLSIVLVG-VGDGPW------DMMKEFDDNI 274 (392)
Q Consensus 208 ~~--~Y~VLLIITDG~Itd~vd~~~~-~~~~d~~~TidaIv~AS~l---PLSII~VG-VGdg~F------~~M~~LDd~l 274 (392)
+. .=..|||...|-....++ .| ....+..+|.++|.+.-.+ ...+-|.. +|..+| +.|++|..
T Consensus 184 ~~~~~~~~llfs~HG~P~~~~~--~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~-- 259 (333)
T PRK00035 184 GEDPEPDRLLFSAHGLPQRYID--KGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAE-- 259 (333)
T ss_pred CcccCCcEEEEecCCCchHHhh--cCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHHHHHH--
Confidence 11 114578888886543221 11 1334577899999988764 34445555 566688 33344432
Q ss_pred CCccccceecccchhhccccCCcchhHHHHHHHHHHHhHHHHHHHHHh
Q 016250 275 PARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIEL 322 (392)
Q Consensus 275 ~~R~~DNvqFV~f~di~~kn~~~~~~d~~lA~~aL~EIP~Ql~ay~~l 322 (392)
.-..+|-+|++- |...+ .++|.||...+++.++.
T Consensus 260 --~g~k~V~v~P~~-Fv~D~-----------lEtl~ei~~e~~~~~~~ 293 (333)
T PRK00035 260 --KGVKKVVVVPPG-FVSDH-----------LETLEEIDIEYREIAEE 293 (333)
T ss_pred --cCCCeEEEECCe-eeccc-----------hhHHHHHHHHHHHHHHH
Confidence 223556666654 32222 36888888888877664
No 88
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=31.83 E-value=3.7e+02 Score=27.56 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=76.3
Q ss_pred ccccccccccccchHHHHHHHHHcCCceeceE------EEEeccCCCCcCCCCCCCCCCcccc--CC--CCCHHHHHHHH
Q 016250 73 DRRYSRIADDYKSLDQVTEALARAGLESSNLI------VGIDFTKSNEWTGKRSFNRRSLHYI--GD--GLNPYEQAISI 142 (392)
Q Consensus 73 ~~~~~~i~~~yssld~V~~aL~~~Gles~nli------VaIDFT~SN~~tg~~s~~~~SLH~i--~~--~~N~YqqAI~~ 142 (392)
..-+-||.=+.+.++++..++.++|+.-+.++ ..||.... . --+.. +. ++=-...|++.
T Consensus 162 ~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~-~----------~~~~~~~GGLSG~~ikp~al~~ 230 (310)
T COG0167 162 VPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETK-K----------PVLANETGGLSGPPLKPIALRV 230 (310)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeecccccccccccc-c----------cccCcCCCCcCcccchHHHHHH
Confidence 45567777788999999999999999863331 12333321 0 01111 11 23345889999
Q ss_pred HhhcccccCCCCccceeecCCCCCCcCCHHHHHHHHHhh---cCcee------ecCCCChHHHHHHHHHHHHhcC
Q 016250 143 IGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREI---VPNLK------LAGPTSFAPVIEMAMSIVEQSG 208 (392)
Q Consensus 143 Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~egVL~aYr~~---l~~v~------LsGPT~FaPVI~~ai~ive~s~ 208 (392)
|-++-..++. .+|+.|-|. +..+-+++..+ ..-|| ..||-.|..|++...++.++.+
T Consensus 231 v~~l~~~~~~--~ipIIGvGG-------I~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g 296 (310)
T COG0167 231 VAELYKRLGG--DIPIIGVGG-------IETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKG 296 (310)
T ss_pred HHHHHHhcCC--CCcEEEecC-------cCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcC
Confidence 9999998876 699999986 44444444443 33343 3589999999999988887754
No 89
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=31.49 E-value=3.9e+02 Score=24.78 Aligned_cols=9 Identities=22% Similarity=0.767 Sum_probs=5.2
Q ss_pred cceeecCCC
Q 016250 156 IPCYGFGDG 164 (392)
Q Consensus 156 ipvfGFGa~ 164 (392)
..+|-+|++
T Consensus 49 ~~vfllG~~ 57 (177)
T TIGR00696 49 LPIFLYGGK 57 (177)
T ss_pred CeEEEECCC
Confidence 456666654
No 90
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.41 E-value=1.2e+02 Score=31.91 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCC-cEEEEEecccCCcccccccCC
Q 016250 237 EQKTVDAIVKASELP-LSIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 237 ~~~TidaIv~AS~lP-LSII~VGVGdg~F~~M~~LDd 272 (392)
..++++||..+...+ +=+||||=|+|..+.|--||+
T Consensus 172 ~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~ 208 (432)
T TIGR00237 172 VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFND 208 (432)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCc
Confidence 356667776666544 567777777777777777765
No 91
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=30.56 E-value=1.1e+02 Score=30.81 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=9.4
Q ss_pred HHHHHhhcccccC
Q 016250 139 AISIIGKTLAVFD 151 (392)
Q Consensus 139 AI~~Ig~vl~~yD 151 (392)
+++.++..+..|.
T Consensus 10 ~~~~l~~~~~~~g 22 (349)
T cd08550 10 AIKEIAAILSTFG 22 (349)
T ss_pred HHHHHHHHHHHcC
Confidence 6777777777764
No 92
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=30.24 E-value=6.7e+02 Score=27.68 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=64.3
Q ss_pred HHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC---CccceeecCCCCC
Q 016250 90 TEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDED---NLIPCYGFGDGGR 166 (392)
Q Consensus 90 ~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD---~~ipvfGFGa~~~ 166 (392)
.+.|+..|-- .|+|+.+|.|+||..+ |.+-||. +|=+++.-... +. +.-|... |
T Consensus 331 v~~~~~~g~l-~n~iav~DvSGSM~~~------------------pm~vaia-Lgll~ae~~~~pf~~~--~ITFs~~-P 387 (534)
T PF11443_consen 331 VDYLKDSGSL-ENCIAVCDVSGSMSGP------------------PMDVAIA-LGLLIAELNKGPFKGR--FITFSEN-P 387 (534)
T ss_pred HHHHhccCCc-cceEEEEecCCccCcc------------------HHHHHHH-HHHHHHHhcccccCCe--EEeecCC-c
Confidence 4456666665 4999999999999631 3344433 33333333221 11 2345443 3
Q ss_pred Cc---C--CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCC----ccEEEEEEeCCcccc
Q 016250 167 FC---Y--GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG----QYHVLLIIADGQVTR 224 (392)
Q Consensus 167 ~c---~--G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~----~Y~VLLIITDG~Itd 224 (392)
.+ . ++.+-++.. .....++-|+|.-|.+.+.+.+.+.+. -.--|+||+|=+.+.
T Consensus 388 ~~~~i~g~~l~ekv~~~----~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~ 450 (534)
T PF11443_consen 388 QLHKIKGDTLREKVRFI----RRMDWGMNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQ 450 (534)
T ss_pred eEEEecCCCHHHHHHHH----HhCCcccCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEecccccc
Confidence 32 2 344444332 244577899999999999988776542 134579999876654
No 93
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=29.71 E-value=5.3e+02 Score=27.23 Aligned_cols=99 Identities=23% Similarity=0.342 Sum_probs=54.4
Q ss_pred chHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCcccee-ecCC
Q 016250 85 SLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCY-GFGD 163 (392)
Q Consensus 85 sld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvf-GFGa 163 (392)
.++.+ .+|.++|++ +|.||.+.-+ . +.+++.|-.+-+.|- + +|+. |.
T Consensus 225 ~~~r~-~~L~~aG~d----~I~vd~a~g~--------------~--------~~~~~~i~~i~~~~~-~--~~vi~G~-- 272 (450)
T TIGR01302 225 DKERA-EALVKAGVD----VIVIDSSHGH--------------S--------IYVIDSIKEIKKTYP-D--LDIIAGN-- 272 (450)
T ss_pred HHHHH-HHHHHhCCC----EEEEECCCCc--------------H--------hHHHHHHHHHHHhCC-C--CCEEEEe--
Confidence 34555 477788988 3667776421 0 234555555555663 2 4433 33
Q ss_pred CCCCcCCHHHHHHHHHhhcCceeec-CC--CChH--------H---HHHHHHHHHHhcCCccEEEEEEeCCcccc
Q 016250 164 GGRFCYGFEEVLSRYREIVPNLKLA-GP--TSFA--------P---VIEMAMSIVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 164 ~~~~c~G~egVL~aYr~~l~~v~Ls-GP--T~Fa--------P---VI~~ai~ive~s~~~Y~VLLIITDG~Itd 224 (392)
|...+++.++...-+..|..+ || +++. | .|.++.+.+++.+ | -||+||+|..
T Consensus 273 ----v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~----v-pviadGGi~~ 338 (450)
T TIGR01302 273 ----VATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSG----I-PVIADGGIRY 338 (450)
T ss_pred ----CCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcC----C-eEEEeCCCCC
Confidence 335677777777666666544 33 2222 3 3334444444433 2 4899999986
No 94
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=29.35 E-value=85 Score=33.47 Aligned_cols=105 Identities=18% Similarity=0.308 Sum_probs=63.1
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----------------
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG---------------- 164 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~---------------- 164 (392)
+.|.+-+|+|.||++ .+ .........|...|..+-.+-. +|||.-
T Consensus 100 vDLYyLMDlS~SM~d------------dl----~~lk~lg~~L~~~m~~it~n~r---lGfGsFVDK~v~P~~~t~p~~l 160 (423)
T smart00187 100 VDLYYLMDLSYSMKD------------DL----DNLKSLGDDLAREMKGLTSNFR---LGFGSFVDKTVSPFVSTRPEKL 160 (423)
T ss_pred cceEEEEeCCccHHH------------HH----HHHHHHHHHHHHHHHhcccCce---eeEEEeecCccCCcccCCHHHh
Confidence 678899999999963 11 1234445556666666665544 688752
Q ss_pred CCC-------c---CCHHHHH------HHHHhhcCceeecCCCC-----hHHHHHHHH--HHHHhcCCccEEEEEEeCCc
Q 016250 165 GRF-------C---YGFEEVL------SRYREIVPNLKLAGPTS-----FAPVIEMAM--SIVEQSGGQYHVLLIIADGQ 221 (392)
Q Consensus 165 ~~~-------c---~G~egVL------~aYr~~l~~v~LsGPT~-----FaPVI~~ai--~ive~s~~~Y~VLLIITDG~ 221 (392)
..+ | .||..+| +.|.+.+.+...+|--. |--||+.|+ +..-...+--++||+.||+.
T Consensus 161 ~~PC~~~~~~c~p~f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~ 240 (423)
T smart00187 161 ENPCPNYNLTCEPPYGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAG 240 (423)
T ss_pred cCCCcCCCCCcCCCcceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCC
Confidence 112 3 3555553 55777777777776433 666666553 11111223468999999988
Q ss_pred ccc
Q 016250 222 VTR 224 (392)
Q Consensus 222 Itd 224 (392)
-+-
T Consensus 241 fH~ 243 (423)
T smart00187 241 FHF 243 (423)
T ss_pred ccc
Confidence 764
No 95
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=29.27 E-value=3.9e+02 Score=26.37 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=61.7
Q ss_pred cccccccccccchHHHHHHHHHcCCceeceE------EEEeccCCCCcCCCCCCCCCCcccc---CC--CCCHHHHHHHH
Q 016250 74 RRYSRIADDYKSLDQVTEALARAGLESSNLI------VGIDFTKSNEWTGKRSFNRRSLHYI---GD--GLNPYEQAISI 142 (392)
Q Consensus 74 ~~~~~i~~~yssld~V~~aL~~~Gles~nli------VaIDFT~SN~~tg~~s~~~~SLH~i---~~--~~N~YqqAI~~ 142 (392)
.-+-||.-++..+.++..+|.++|...+-++ ++||....... -.+|-. +. .+=....+++.
T Consensus 170 Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~--------~~~~~~~~~gg~sG~a~~p~~l~~ 241 (299)
T cd02940 170 PVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPA--------PGVEGKTTYGGYSGPAVKPIALRA 241 (299)
T ss_pred CeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCcc--------ccccCCCCcCcccCCCcchHHHHH
Confidence 3456677677788899999999998853221 45665422100 001210 00 01112446677
Q ss_pred HhhcccccCCCCccceeecCCCCCCcCCHHHHHHHHHhhcCcee------ecCCCChHHHHH
Q 016250 143 IGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLK------LAGPTSFAPVIE 198 (392)
Q Consensus 143 Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~egVL~aYr~~l~~v~------LsGPT~FaPVI~ 198 (392)
|.++.+.++ ..+|++|=|+- ..-+++++....-..-|+ ..||..+..|++
T Consensus 242 v~~~~~~~~--~~ipIig~GGI----~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 242 VSQIARAPE--PGLPISGIGGI----ESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred HHHHHHhcC--CCCcEEEECCC----CCHHHHHHHHHcCCChheEceeecccCCcHHHHHhh
Confidence 777777664 34999998873 334566655443333333 337777766654
No 96
>PRK00077 eno enolase; Provisional
Probab=28.91 E-value=5.4e+02 Score=27.04 Aligned_cols=144 Identities=18% Similarity=0.270 Sum_probs=77.2
Q ss_pred ccccchHHHHHHHHHcCCce-eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCcccee
Q 016250 81 DDYKSLDQVTEALARAGLES-SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCY 159 (392)
Q Consensus 81 ~~yssld~V~~aL~~~Gles-~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvf 159 (392)
++-.-|+.|.+|++++|++- -.+.++||+-+|--|... .|+ .-+.. =..+++++.+.++++.|+ +.
T Consensus 214 ~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~-~y~-----~~~~~-~s~~e~~~~~~~l~e~y~------i~ 280 (425)
T PRK00077 214 SNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDG-KYV-----LEGEG-LTSEEMIDYLAELVDKYP------IV 280 (425)
T ss_pred chHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCC-eee-----ccCCc-CCHHHHHHHHHHHHhhCC------cE
Confidence 33445788899999999982 369999999887433110 111 10111 124788888889888775 22
Q ss_pred ecCCCCCCc-CCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEE--EEeCCccccccccccCCCChh
Q 016250 160 GFGDGGRFC-YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLL--IIADGQVTRSVDTVRGCLSPQ 236 (392)
Q Consensus 160 GFGa~~~~c-~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLL--IITDG~Itd~vd~~~~~~~~d 236 (392)
-+ .+|.. .+++++-+.-+++-..+.+.|--.|.--.+.+.+..+... .-+++ +---|.|+
T Consensus 281 ~i--EdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a--~d~v~ik~~~~GGit------------- 343 (425)
T PRK00077 281 SI--EDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGA--ANSILIKVNQIGTLT------------- 343 (425)
T ss_pred EE--EcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCC--CCEEEeCccccCCHH-------------
Confidence 22 12222 4566665543333124666655444222233333333322 22222 23347776
Q ss_pred HHHHHHHHHHhcCCCcEEEE
Q 016250 237 EQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 237 ~~~TidaIv~AS~lPLSII~ 256 (392)
++++++.-|-..-+..++
T Consensus 344 --ea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 344 --ETLDAIELAKRAGYTAVV 361 (425)
T ss_pred --HHHHHHHHHHHcCCeEEE
Confidence 566666666666665444
No 97
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=27.40 E-value=2.8e+02 Score=27.99 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhh-----cCceeecCCCChHHHHHHHHHHHHhcCCc-cEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 016250 170 GFEEVLSRYREI-----VPNLKLAGPTSFAPVIEMAMSIVEQSGGQ-YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 243 (392)
Q Consensus 170 G~egVL~aYr~~-----l~~v~LsGPT~FaPVI~~ai~ive~s~~~-Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tida 243 (392)
|+...++.++++ .-.|++.- -+...+++++.++.++.+.. -++.+|++||-++ .+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~gvR~DS-Gd~~~~~~~~~~~l~~~g~~~~~~~ii~sg~l~~--------------~~~i~~ 311 (343)
T cd01567 247 GFLNALKLAKALGAGGGLLGVRLDS-GDPVELIKKVRKHLDELGIDLNKKKIIISGDLDT--------------EEAIEL 311 (343)
T ss_pred HHHHHHHHHHhhcccCCCcEEECCC-CCHHHHHHHHHHHHHHcCCCCCCeEEEEECCCCH--------------HHHHHH
Confidence 455555555554 23455543 36677888888888887652 2555788887653 355666
Q ss_pred HHHhcCCCcEEEEEecccC
Q 016250 244 IVKASELPLSIVLVGVGDG 262 (392)
Q Consensus 244 Iv~AS~lPLSII~VGVGdg 262 (392)
+..+-. -.++..|||..
T Consensus 312 ~~~~~~--~~~~~fGvGt~ 328 (343)
T cd01567 312 LLEQGA--SPNDAFGVGTS 328 (343)
T ss_pred HHHcCC--CcCcEEeeCcc
Confidence 666655 56788899983
No 98
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=26.86 E-value=2.5e+02 Score=29.38 Aligned_cols=138 Identities=18% Similarity=0.254 Sum_probs=77.9
Q ss_pred HcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCcCCHHHH
Q 016250 95 RAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEV 174 (392)
Q Consensus 95 ~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~egV 174 (392)
+.|+- -+|+|.||+|..+... .++ +|-.--+|.-+-..+..|=+.|-|--.||=.. -+|..+.
T Consensus 56 r~Gii-Rhl~iviD~S~am~e~--------Df~-----P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~---k~g~A~~ 118 (378)
T KOG2807|consen 56 RKGII-RHLYIVIDCSRAMEEK--------DFR-----PSRFANVIKYLEGFVPEFFDQNPISQIGIISI---KDGKADR 118 (378)
T ss_pred hhhhh-eeEEEEEEhhhhhhhc--------cCC-----chHHHHHHHHHHHHHHHHhccCchhheeEEEE---ecchhhH
Confidence 45666 4899999999999742 222 45556666666665555555666666666221 0122222
Q ss_pred H-------HHHHhhcCcee-ecCCCChHHHHHHHHHHHHhcCCc--cEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 016250 175 L-------SRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQSGGQ--YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 244 (392)
Q Consensus 175 L-------~aYr~~l~~v~-LsGPT~FaPVI~~ai~ive~s~~~--Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI 244 (392)
+ +.-.+.+..+. -+|--+.--.++.|++..+...++ =-||+|+.-=...|- -|.-+||+.+
T Consensus 119 lt~ltgnp~~hI~aL~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DP---------gdi~~tI~~l 189 (378)
T KOG2807|consen 119 LTDLTGNPRIHIHALKGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDP---------GDIYETIDKL 189 (378)
T ss_pred HHHhcCCHHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCc---------ccHHHHHHHH
Confidence 2 11222333333 445555556666666665554432 257777765444442 2377899998
Q ss_pred HHhcCCCcEEEEEeccc
Q 016250 245 VKASELPLSIVLVGVGD 261 (392)
Q Consensus 245 v~AS~lPLSII~VGVGd 261 (392)
+.. -|=+-+||+-.
T Consensus 190 k~~---kIRvsvIgLsa 203 (378)
T KOG2807|consen 190 KAY---KIRVSVIGLSA 203 (378)
T ss_pred Hhh---CeEEEEEeech
Confidence 853 45566677654
No 99
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=25.86 E-value=3.7e+02 Score=24.90 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=23.6
Q ss_pred ceeecC--CCChHHHHHHHHHHHHhcCCccEEEEEEeCCccc
Q 016250 184 NLKLAG--PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVT 223 (392)
Q Consensus 184 ~v~LsG--PT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~It 223 (392)
.|.|.| |+...+.+..+++.+++.+ .. +.|.|.|-..
T Consensus 68 ~I~~~GGEPll~~~~~~~li~~~~~~g--~~-~~i~TNG~~~ 106 (235)
T TIGR02493 68 GVTFSGGEPLLQPEFLSELFKACKELG--IH-TCLDTSGFLG 106 (235)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHCC--CC-EEEEcCCCCC
Confidence 455554 6766777777777777654 22 3577888543
No 100
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.86 E-value=1.8e+02 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcccccCCCCccceeecCCC
Q 016250 135 PYEQAISIIGKTLAVFDEDNLIPCYGFGDG 164 (392)
Q Consensus 135 ~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~ 164 (392)
..++|++.|. ..+..++.|-+||.|..
T Consensus 29 ~i~~a~~~i~---~al~~~~rI~i~G~G~S 55 (192)
T PRK00414 29 AIQRAAVLIA---DSFKAGGKVLSCGNGGS 55 (192)
T ss_pred HHHHHHHHHH---HHHHCCCEEEEEeCcHH
Confidence 3556665554 44568899999999875
No 101
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.08 E-value=6.6e+02 Score=24.60 Aligned_cols=113 Identities=17% Similarity=0.237 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCC-
Q 016250 88 QVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGR- 166 (392)
Q Consensus 88 ~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~- 166 (392)
.+...|.+.|...+.+-.+.=|-. ++-+.+ .++ ..+|+.|-+.+. +..+-+|.-|..-+
T Consensus 25 ~ia~~L~~~Gv~~iE~G~~a~~~~-------------~~~~~~--~~~-~e~i~~~~~~~~----~~~l~~~~r~~~~~~ 84 (275)
T cd07937 25 PIAEALDEAGFFSLEVWGGATFDV-------------CMRFLN--EDP-WERLRELRKAMP----NTPLQMLLRGQNLVG 84 (275)
T ss_pred HHHHHHHHcCCCEEEccCCcchhh-------------hccccC--CCH-HHHHHHHHHhCC----CCceehhcccccccC
Confidence 356788899988532221111111 111233 233 444555544432 34455554443211
Q ss_pred ---C-cCCHHHHHHHHHhh-cCceeecCCCChHHHHHHHHHHHHhcCCccEEE--EEEeCCcc
Q 016250 167 ---F-CYGFEEVLSRYREI-VPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVL--LIIADGQV 222 (392)
Q Consensus 167 ---~-c~G~egVL~aYr~~-l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VL--LIITDG~I 222 (392)
. -+..++.+++=.+. +..|++.-|.+--+-+..+++.+++.+ +.|. +-.+|+..
T Consensus 85 ~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~i~~~~~~~ 145 (275)
T cd07937 85 YRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG--KHVEGAICYTGSPV 145 (275)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC--CeEEEEEEecCCCC
Confidence 1 12245555443333 567888888888888888888888876 3332 33456543
No 102
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.00 E-value=2.6e+02 Score=23.01 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEec
Q 016250 190 PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGV 259 (392)
Q Consensus 190 PT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGV 259 (392)
|+...+..+.+..+.+.......| .|.|.|...+ .+.++.|.++. +..+.+||
T Consensus 56 p~~~~~~~~~~~~~~~~~~~~~~i-~~~t~~~~~~-------------~~~l~~l~~~~---~~~i~~~l 108 (166)
T PF04055_consen 56 PTLHPDFIELLELLRKIKKRGIRI-SINTNGTLLD-------------EELLDELKKLG---VDRIRISL 108 (166)
T ss_dssp GGGSCHHHHHHHHHHHCTCTTEEE-EEEEESTTHC-------------HHHHHHHHHTT---CSEEEEEE
T ss_pred CCcchhHHHHHHHHHHhhccccce-eeeccccchh-------------HHHHHHHHhcC---ccEEeccc
Confidence 444444555554444432223343 6667776542 46666666654 55566555
No 103
>COG5583 Uncharacterized small protein [Function unknown]
Probab=23.96 E-value=1.3e+02 Score=23.45 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHhcCCcc-EEEEEEeCCcccc
Q 016250 191 TSFAPVIEMAMSIVEQSGGQY-HVLLIIADGQVTR 224 (392)
Q Consensus 191 T~FaPVI~~ai~ive~s~~~Y-~VLLIITDG~Itd 224 (392)
+.-+++|+++.+..+. .+| .|.+++-||+|..
T Consensus 5 ~~~~~~~ekI~~~Le~--lkyGsV~ItVhdgqViQ 37 (54)
T COG5583 5 IKDPEVIEKIKKALEG--LKYGSVTITVHDGQVIQ 37 (54)
T ss_pred ccchHHHHHHHHHHhh--cccceEEEEEECCEEEE
Confidence 3456788888777664 457 7889999999975
No 104
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=23.84 E-value=2.8e+02 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=17.8
Q ss_pred eecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccc
Q 016250 186 KLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVT 223 (392)
Q Consensus 186 ~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~It 223 (392)
-+.+++....+.+.+.+..+..+..+.+ +++.+|+.+
T Consensus 29 ivtd~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~e~~ 65 (345)
T cd08195 29 IVTDENVAPLYLEKLKAALEAAGFEVEV-IVIPAGEAS 65 (345)
T ss_pred EEECCchHHHHHHHHHHHHHhcCCceEE-EEeCCCCCc
Confidence 3455555554555555555544433333 334555443
No 105
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=23.20 E-value=71 Score=38.83 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=49.4
Q ss_pred CCccceeecCCC-CCCcCCHHHHHHHHHhhcCceeecCCC-----ChHHHHHHHHH-HHHhcCCccEEEEEEeCCcccc
Q 016250 153 DNLIPCYGFGDG-GRFCYGFEEVLSRYREIVPNLKLAGPT-----SFAPVIEMAMS-IVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 153 D~~ipvfGFGa~-~~~c~G~egVL~aYr~~l~~v~LsGPT-----~FaPVI~~ai~-ive~s~~~Y~VLLIITDG~Itd 224 (392)
.-.||+|||-.. .-+...++.+-..|.+.+++|+..||- +|.-.|-.+|. +.+++.. .+-||+-||..+-
T Consensus 2145 rle~PaYglQ~T~~vP~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~~~--~~~lillDGspty 2221 (2376)
T KOG1202|consen 2145 RLEIPAYGLQCTEAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQQS--PAPLILLDGSPTY 2221 (2376)
T ss_pred hcCCcchhhhccccCCcchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhhcC--CCcEEEecCchHH
Confidence 335888998665 455678999999999999999999984 55555555543 3444432 3338999998764
No 106
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=22.33 E-value=9.3e+02 Score=25.92 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=91.5
Q ss_pred ccccccchHHHHHHHHHcCCce-eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccc
Q 016250 79 IADDYKSLDQVTEALARAGLES-SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIP 157 (392)
Q Consensus 79 i~~~yssld~V~~aL~~~Gles-~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ip 157 (392)
+..+-.-||-+..|.+++|.+- ..+.+|+|+.+|-.|... .-|+-+. .=..++-|+-+..+++.|.
T Consensus 211 l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~~------~Y~~~~~-~~~~~e~i~~~~~Lv~~Yp------ 277 (423)
T COG0148 211 LKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKDG------KYVLEGE-SLTSEELIEYYLELVKKYP------ 277 (423)
T ss_pred CCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccCC------eeeecCc-ccCHHHHHHHHHHHHHhCC------
Confidence 3334556999999999999993 238999999999876432 1222222 2234677888888888875
Q ss_pred eeecCCCCCCcCCHHHHHHHHHhhcCceeecCCCChH---HHHHHHHHHHHhcCCcc-EEEEEEeCCccccccccccCCC
Q 016250 158 CYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFA---PVIEMAMSIVEQSGGQY-HVLLIIADGQVTRSVDTVRGCL 233 (392)
Q Consensus 158 vfGFGa~~~~c~G~egVL~aYr~~l~~v~LsGPT~Fa---PVI~~ai~ive~s~~~Y-~VLLIITDG~Itd~vd~~~~~~ 233 (392)
++-.=+ .-.-..++++.+.-.+.-.+|++-|--.|. .+|++.++. +-+ .||+ -=-||--
T Consensus 278 ivsiED-pl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~-----g~aNaiLI--K~NQIGT--------- 340 (423)
T COG0148 278 IVSIED-PLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEK-----GAANAILI--KPNQIGT--------- 340 (423)
T ss_pred EEEEcC-CCCchhHHHHHHHHHhhCCeEEEECCcceecCHHHHHHHHHh-----ccCceEEE--echhccc---------
Confidence 222211 111235666666655666788998865553 445555443 122 3332 2234432
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEEEe
Q 016250 234 SPQEQKTVDAIVKASELPLSIVLVG 258 (392)
Q Consensus 234 ~~d~~~TidaIv~AS~lPLSII~VG 258 (392)
..+|.++|.-|-+.-+..|+=.
T Consensus 341 ---LTEt~~ai~~A~~~gy~~viSH 362 (423)
T COG0148 341 ---LTETLEAINLAKDAGYTAVISH 362 (423)
T ss_pred ---HHHHHHHHHHHHHCCCeEEEec
Confidence 5689999999998888888754
No 107
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=22.01 E-value=5.6e+02 Score=33.62 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=73.7
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCCCCcCCHHHHHH--HH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLS--RY 178 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~egVL~--aY 178 (392)
.+++|+||=|+||..+|-- -|. -..+.-+.+.|... +-+.|.+.-||.....++-|+.-.. .=
T Consensus 4393 yqvmisiddsksmses~~~-----~la---------~etl~lvtkals~l-e~g~iav~kfge~~~~lh~fdkqfs~esg 4457 (4600)
T COG5271 4393 YQVMISIDDSKSMSESGST-----VLA---------LETLALVTKALSLL-EVGQIAVMKFGEQPELLHPFDKQFSSESG 4457 (4600)
T ss_pred eEEEEEecccccccccCce-----eee---------hHHHHHHHHHHHHH-hhccEEEEecCCChhhhCchhhhhcchHH
Confidence 5689999999999765421 111 11222333333333 3577889999987333332221110 00
Q ss_pred HhhcCceeec-CCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCc
Q 016250 179 REIVPNLKLA-GPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPL 252 (392)
Q Consensus 179 r~~l~~v~Ls-GPT~FaPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPL 252 (392)
-+.+.+..+- .-|+--.+..+.+++.+.- ..+...=+||+||-..| -+.+.+.+++|-+.-+
T Consensus 4458 ~~~f~~f~feqs~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgiced------------hdsi~kllrra~e~kv 4525 (4600)
T COG5271 4458 VQMFSHFTFEQSNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICED------------HDSIRKLLRRAQEEKV 4525 (4600)
T ss_pred HHHHHhhchhcccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccc------------hHHHHHHHHHhhhcce
Confidence 0111111121 1244444444445554321 22345558999997765 4677788889999988
Q ss_pred EEEEEeccc
Q 016250 253 SIVLVGVGD 261 (392)
Q Consensus 253 SII~VGVGd 261 (392)
-||||=+-+
T Consensus 4526 mivfvild~ 4534 (4600)
T COG5271 4526 MIVFVILDN 4534 (4600)
T ss_pred EEEEEEecC
Confidence 888886644
No 108
>PRK05434 phosphoglyceromutase; Provisional
Probab=21.59 E-value=2.7e+02 Score=30.36 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCcccc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLIITDG~Itd 224 (392)
-+++.++++.++++++..|++=.++||+|+.
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~SdggVHs 125 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGGVHS 125 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCccc
Confidence 3455555555555555555555555555553
No 109
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=21.54 E-value=82 Score=34.45 Aligned_cols=107 Identities=27% Similarity=0.395 Sum_probs=62.6
Q ss_pred cccccccccccccccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccC-----CCC-CH-HHHHHHH
Q 016250 70 RKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIG-----DGL-NP-YEQAISI 142 (392)
Q Consensus 70 ~~~~~~~~~i~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~-----~~~-N~-YqqAI~~ 142 (392)
=.+-=||....|.|.++ .+||+.+|++ .++.|.+....+..-... +.+-|...+ +.+ ++ -+..|..
T Consensus 292 IalVGKY~~~~daY~SI---~eAL~~ag~~-~~~~V~~~~i~se~i~~~---~~~~L~~~dGIiLpGG~G~~~~~g~i~a 364 (525)
T TIGR00337 292 IGIVGKYVELKDSYLSV---IEALKHAGAK-LDTKVNIKWIDSEDLEEE---GAEFLKGVDGILVPGGFGERGVEGKILA 364 (525)
T ss_pred EEEEeCCcCCHHHHHHH---HHHHHhCccc-cCCEEEEEEecHHHhhhh---hhhhhcCCCEEEeCCCCCChhhcChHHH
Confidence 34456788888888655 8899999998 677777776655432110 000122111 111 11 1222222
Q ss_pred HhhcccccCCCCccceeecCCCCCCcCCHHHHHHHHHhhcCceeecCCCChH
Q 016250 143 IGKTLAVFDEDNLIPCYGFGDGGRFCYGFEEVLSRYREIVPNLKLAGPTSFA 194 (392)
Q Consensus 143 Ig~vl~~yDdD~~ipvfGFGa~~~~c~G~egVL~aYr~~l~~v~LsGPT~Fa 194 (392)
+-... ++.+|+||- |.|++-+.-+|-+.+-++...-.+.|.
T Consensus 365 i~~a~-----e~~iP~LGI------ClG~Qll~i~~grnv~gl~~A~s~Ef~ 405 (525)
T TIGR00337 365 IKYAR-----ENNIPFLGI------CLGMQLAVIEFARNVLGLKGANSTEFD 405 (525)
T ss_pred HHHHH-----HcCCCEEEE------cHHHHHHHHHHHHHhcCCCCCCccccC
Confidence 21111 356999997 999999998888877666655544443
No 110
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=21.35 E-value=2.7e+02 Score=30.34 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccc
Q 016250 194 APVIEMAMSIVEQSGGQYHVLLIIADGQVT 223 (392)
Q Consensus 194 aPVI~~ai~ive~s~~~Y~VLLIITDG~It 223 (392)
-|++..+++.++++++..|++=.++||+|+
T Consensus 91 n~~l~~~~~~~~~~~~~lHl~GL~SdGgVH 120 (501)
T TIGR01307 91 NPALLGAIDRAKDNNGKLHLMGLVSDGGVH 120 (501)
T ss_pred CHHHHHHHHHHHhcCCceEEEEeccCCCCc
Confidence 344445555554444445554455555554
No 111
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=21.34 E-value=1.2e+02 Score=26.16 Aligned_cols=58 Identities=12% Similarity=0.337 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccc
Q 016250 196 VIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMK 268 (392)
Q Consensus 196 VI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~ 268 (392)
.+.++.+...+. .|-| +|||+.-..+ .++.++.+.+.+-+|+.+.|=+.|......++
T Consensus 34 ~~~~~~~~l~~~--~~~i-Iiite~~a~~------------i~~~i~~~~~~~~~P~iv~IPs~~~~~~~~~~ 91 (104)
T COG1436 34 ELRAALRVLAED--DVGI-ILITEDLAEK------------IREEIRRIIRSSVLPAIVEIPSPGKEEEEPLR 91 (104)
T ss_pred HHHHHHHhhccC--CceE-EEEeHHHHhh------------hHHHHHHHhhccCccEEEEeCCCCCCccchHH
Confidence 455555554444 5666 6777766654 78899999999999998887554444443333
No 112
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.12 E-value=3.4e+02 Score=27.25 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=8.1
Q ss_pred HHHHHhhcccccC
Q 016250 139 AISIIGKTLAVFD 151 (392)
Q Consensus 139 AI~~Ig~vl~~yD 151 (392)
+++.|++.+..+.
T Consensus 10 ~~~~l~~~~~~~~ 22 (345)
T cd08171 10 AYKKIPEVCEKYG 22 (345)
T ss_pred HHHHHHHHHHhcC
Confidence 5666777666543
No 113
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.06 E-value=8.9e+02 Score=24.66 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCcccee---ecCC
Q 016250 87 DQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCY---GFGD 163 (392)
Q Consensus 87 d~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvf---GFGa 163 (392)
-.|..+|.++|... |.++-.+++-| .+|+ +--...++ ...|+.+.+.+. +-.+-++ |+|
T Consensus 28 ~~i~~~L~~aGv~~------IEvg~~~g~g~-~s~~-----~g~~~~~~-~e~i~~~~~~~~----~~~~~~ll~pg~~- 89 (337)
T PRK08195 28 RAIARALDAAGVPV------IEVTHGDGLGG-SSFN-----YGFGAHTD-EEYIEAAAEVVK----QAKIAALLLPGIG- 89 (337)
T ss_pred HHHHHHHHHcCCCE------EEeecCCCCCC-cccc-----CCCCCCCH-HHHHHHHHHhCC----CCEEEEEeccCcc-
Confidence 45678899999995 34443444321 1222 11111122 334555543332 2333332 333
Q ss_pred CCCCcCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 016250 164 GGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 243 (392)
Q Consensus 164 ~~~~c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tida 243 (392)
.++++-.+...-+..|++.-..+...++..+++.+++.+ |.|.+.+.+....+ .++..+.
T Consensus 90 ------~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G--~~v~~~l~~a~~~~------------~e~l~~~ 149 (337)
T PRK08195 90 ------TVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELG--MDTVGFLMMSHMAP------------PEKLAEQ 149 (337)
T ss_pred ------cHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCC--CeEEEEEEeccCCC------------HHHHHHH
Confidence 256666666666777787767777888999999998876 56666666654332 3555555
Q ss_pred HHHhcCCCcE
Q 016250 244 IVKASELPLS 253 (392)
Q Consensus 244 Iv~AS~lPLS 253 (392)
+..+..+..-
T Consensus 150 a~~~~~~Ga~ 159 (337)
T PRK08195 150 AKLMESYGAQ 159 (337)
T ss_pred HHHHHhCCCC
Confidence 5555555443
No 114
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.68 E-value=8.1e+02 Score=24.67 Aligned_cols=159 Identities=20% Similarity=0.240 Sum_probs=89.2
Q ss_pred cccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCC-CCCHHHHHHH------HHhhcccccC-CC
Q 016250 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAIS------IIGKTLAVFD-ED 153 (392)
Q Consensus 82 ~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~-~~N~YqqAI~------~Ig~vl~~yD-dD 153 (392)
++.+.-++..+|.++|.. -+-+||=||.=.- -|+ ...-.++|+. .+.++++.+. .+
T Consensus 29 ~~e~s~e~i~~L~~~GaD--~iELGvPfSDPvA--------------DGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~ 92 (265)
T COG0159 29 DLETSLEIIKTLVEAGAD--ILELGVPFSDPVA--------------DGPTIQAAHLRALAAGVTLEDTLELVEEIRAKG 92 (265)
T ss_pred CHHHHHHHHHHHHhCCCC--EEEecCCCCCcCc--------------cCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC
Confidence 344455667788899999 4778888875442 222 1344566665 4566666666 44
Q ss_pred CccceeecCCCCCC-cCCHHHHHH-------------------------HHH-hhcCceeecCCCChHHHHHHHHHHHHh
Q 016250 154 NLIPCYGFGDGGRF-CYGFEEVLS-------------------------RYR-EIVPNLKLAGPTSFAPVIEMAMSIVEQ 206 (392)
Q Consensus 154 ~~ipvfGFGa~~~~-c~G~egVL~-------------------------aYr-~~l~~v~LsGPT~FaPVI~~ai~ive~ 206 (392)
..+|+.-|+--++- -.|++..++ ..+ .-+.-|-|.-||.=..-|+.+++.++
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~- 171 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS- 171 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC-
Confidence 66777666654332 123333222 111 22344667778887777777665532
Q ss_pred cCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCcccccc
Q 016250 207 SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKE 269 (392)
Q Consensus 207 s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~ 269 (392)
+=-|+|-+- | +|.. +...+...++.++.|.+-+..|+ +||.|=.+=+..++
T Consensus 172 -GFiY~vs~~---G-vTG~----~~~~~~~~~~~v~~vr~~~~~Pv---~vGFGIs~~e~~~~ 222 (265)
T COG0159 172 -GFIYYVSRM---G-VTGA----RNPVSADVKELVKRVRKYTDVPV---LVGFGISSPEQAAQ 222 (265)
T ss_pred -CcEEEEecc---c-ccCC----CcccchhHHHHHHHHHHhcCCCe---EEecCcCCHHHHHH
Confidence 223444222 2 2321 11223346788888999889995 78888665444433
No 115
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.65 E-value=2.8e+02 Score=22.63 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=26.1
Q ss_pred EEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCcccccccC
Q 016250 212 HVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 212 ~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~LD 271 (392)
.++++|+-.+-+ .++++++..|.....- +|+|.+..-..|.++.
T Consensus 62 ~~~i~iS~~g~~--------------~~~~~~~~~a~~~g~~--iv~iT~~~~~~l~~~~ 105 (139)
T cd05013 62 DVVIAISFSGET--------------KETVEAAEIAKERGAK--VIAITDSANSPLAKLA 105 (139)
T ss_pred CEEEEEeCCCCC--------------HHHHHHHHHHHHcCCe--EEEEcCCCCChhHHhc
Confidence 566777765543 4678888888877644 4455444334444443
No 116
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=20.63 E-value=40 Score=33.77 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=62.6
Q ss_pred cccccCCCCccceeecCCCCC--CcCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc----------CCccEE
Q 016250 146 TLAVFDEDNLIPCYGFGDGGR--FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS----------GGQYHV 213 (392)
Q Consensus 146 vl~~yDdD~~ipvfGFGa~~~--~c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s----------~~~Y~V 213 (392)
+|+. +....+-..|+|+... +.....++++ |.+....++++=||.--|-++++|+.+.+. +++-.|
T Consensus 175 ilek-eek~t~~~mgYgd~q~~LElt~~~~~id-~~kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~v 252 (299)
T KOG2943|consen 175 ILEK-EEKYTRARMGYGDEQCVLELTYNYDVID-RAKGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATV 252 (299)
T ss_pred hhhh-hhhhhhhhhccCCcceEEEEEeccCccc-ccccceeEEEeccccccccHHHHHHHhccccccceeeccCCCccee
Confidence 4443 5667788899998742 2245556665 355667889999999999999999887543 233333
Q ss_pred -EEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCcccccccCCC
Q 016250 214 -LLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDN 273 (392)
Q Consensus 214 -LLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~LDd~ 273 (392)
++|+.|= =.|-|+=||+.+|..+.+.|++
T Consensus 253 qvvil~DP-------------------------------DgheicfVdde~F~~lsk~d~~ 282 (299)
T KOG2943|consen 253 QVVILADP-------------------------------DGHEICFVDDEGFRKLSKIDDK 282 (299)
T ss_pred EEEEEECC-------------------------------CCceEEEeccHHHHHHhccCch
Confidence 3555552 2234555778888888888763
No 117
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=20.51 E-value=2.5e+02 Score=27.06 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccc
Q 016250 192 SFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMK 268 (392)
Q Consensus 192 ~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~ 268 (392)
.|+.|++.+.+.+++.+ |.++|+-|++... .++.++.+.+ +-.=.||+.+.... ++.+.
T Consensus 15 ff~~ii~gIe~~a~~~G--y~l~l~~t~~~~~-------------~e~~i~~l~~--~~vDGiI~~s~~~~-~~~l~ 73 (279)
T PF00532_consen 15 FFAEIIRGIEQEAREHG--YQLLLCNTGDDEE-------------KEEYIELLLQ--RRVDGIILASSEND-DEELR 73 (279)
T ss_dssp HHHHHHHHHHHHHHHTT--CEEEEEEETTTHH-------------HHHHHHHHHH--TTSSEEEEESSSCT-CHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CEEEEecCCCchH-------------HHHHHHHHHh--cCCCEEEEecccCC-hHHHH
Confidence 47888888888888764 8888887776543 2255555543 45666777765543 44443
No 118
>PRK09271 flavodoxin; Provisional
Probab=20.30 E-value=2.2e+02 Score=25.32 Aligned_cols=32 Identities=16% Similarity=0.550 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEEEecccCCcc
Q 016250 234 SPQEQKTVDAIVKASELPLSIVLVGVGDGPWD 265 (392)
Q Consensus 234 ~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~ 265 (392)
++++..-.+.|.+.-....-+.++|.||..|.
T Consensus 68 p~~~~~f~~~l~~~~~~~k~~avfgsgd~~~~ 99 (160)
T PRK09271 68 PPEMKRFIAELAETIGKPPNVAVFGTGETQWG 99 (160)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEecCCCCcC
Confidence 33477777777764334567889999998883
No 119
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=20.14 E-value=2.1e+02 Score=28.69 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCceece-EEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecC
Q 016250 87 DQVTEALARAGLESSNL-IVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFG 162 (392)
Q Consensus 87 d~V~~aL~~~Gles~nl-iVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFG 162 (392)
.|...-+...+.. +|+ +++.||++.-..+|+++ ..|.|+.+-...--+-+.|-.+..|=+||+-
T Consensus 74 gq~~~~~~~l~~~-ln~nv~~~DYSGyG~S~G~ps-----------E~n~y~Di~avye~Lr~~~g~~~~Iil~G~S 138 (258)
T KOG1552|consen 74 GQMVELFKELSIF-LNCNVVSYDYSGYGRSSGKPS-----------ERNLYADIKAVYEWLRNRYGSPERIILYGQS 138 (258)
T ss_pred HHHHHHHHHHhhc-ccceEEEEecccccccCCCcc-----------cccchhhHHHHHHHHHhhcCCCceEEEEEec
Confidence 3444434344433 455 78999999987776632 2467776665555567778667788899985
No 120
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=20.08 E-value=3.9e+02 Score=28.94 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=39.2
Q ss_pred ceeecCCCChHHHHHHHHHHHHhc-C-----Ccc-----EEEEEEeCCccccccccccCCCChhHHHHHHHH--HHhcCC
Q 016250 184 NLKLAGPTSFAPVIEMAMSIVEQS-G-----GQY-----HVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI--VKASEL 250 (392)
Q Consensus 184 ~v~LsGPT~FaPVI~~ai~ive~s-~-----~~Y-----~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI--v~AS~l 250 (392)
.|++.- -+.+.++..+.++..+. | .-| +|=+|.+|| |+ +.+..+.+ .++...
T Consensus 291 ~VR~DS-GD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~g-ld-------------e~~i~~il~~l~~~G~ 355 (463)
T PRK09198 291 VIRPDS-GDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDG-IT-------------LDSIEAILEALKAKGF 355 (463)
T ss_pred EEECCC-CCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCC-CC-------------HHHHHHHHHHHHhCCC
Confidence 344443 46777888887775542 0 124 676777776 33 33333323 335689
Q ss_pred CcEEEEEecccC
Q 016250 251 PLSIVLVGVGDG 262 (392)
Q Consensus 251 PLSII~VGVGdg 262 (392)
|+.-|..|||..
T Consensus 356 ~~dni~FGvGt~ 367 (463)
T PRK09198 356 AAENIVFGMGGA 367 (463)
T ss_pred ccccceEecCcc
Confidence 999999999985
Done!