Query 016250
Match_columns 392
No_of_seqs 182 out of 532
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hqf_A Thrombospondin-related 98.6 6.7E-07 2.3E-11 83.8 15.2 143 100-272 21-179 (281)
2 4hqo_A Sporozoite surface prot 98.6 1.8E-07 6.3E-12 87.4 9.7 141 101-271 19-175 (266)
3 3ibs_A Conserved hypothetical 98.5 3E-07 1E-11 81.5 9.2 135 101-262 12-150 (218)
4 3n2n_F Anthrax toxin receptor 98.5 1.2E-06 4E-11 75.6 11.7 143 101-272 8-158 (185)
5 1shu_X Anthrax toxin receptor 98.5 1E-06 3.5E-11 75.8 10.6 143 101-272 7-155 (182)
6 1n3y_A Integrin alpha-X; alpha 98.4 4.5E-07 1.5E-11 79.2 6.2 141 101-271 10-165 (198)
7 2xgg_A Microneme protein 2; A/ 98.3 4.6E-06 1.6E-10 72.7 12.3 129 101-262 18-162 (178)
8 4fx5_A VON willebrand factor t 98.3 1.2E-06 4.1E-11 89.4 9.1 145 100-271 77-230 (464)
9 1q0p_A Complement factor B; VO 98.3 2.2E-06 7.5E-11 75.9 8.9 148 100-271 15-190 (223)
10 1atz_A VON willebrand factor; 98.2 5.4E-06 1.8E-10 72.5 10.1 136 101-271 6-156 (189)
11 4b4t_W RPN10, 26S proteasome r 98.2 8E-06 2.7E-10 78.6 11.2 158 102-287 5-174 (268)
12 1mf7_A Integrin alpha M; cell 98.2 8E-07 2.8E-11 77.9 3.8 141 101-271 6-161 (194)
13 1ijb_A VON willebrand factor; 98.2 6.8E-06 2.3E-10 73.2 9.8 139 101-271 14-167 (202)
14 2b2x_A Integrin alpha-1; compu 98.1 2.1E-05 7.2E-10 70.8 12.5 126 101-262 23-164 (223)
15 2x31_A Magnesium-chelatase 60 98.1 1.3E-07 4.4E-12 82.5 -2.2 147 101-271 6-161 (189)
16 2odp_A Complement C2; C3/C5 co 98.1 5.1E-06 1.7E-10 83.4 8.9 146 100-272 9-185 (509)
17 1pt6_A Integrin alpha-1; cell 98.1 3.5E-05 1.2E-09 68.7 12.7 126 101-262 8-149 (213)
18 2x5n_A SPRPN10, 26S proteasome 98.0 3.1E-05 1.1E-09 70.2 11.3 157 102-289 4-172 (192)
19 3hrz_D Complement factor B; se 98.0 2.4E-05 8.3E-10 81.8 10.9 149 100-272 243-419 (741)
20 1rrk_A Complement factor B; BB 98.0 2.3E-05 8E-10 78.0 9.9 145 101-272 2-177 (497)
21 1v7p_C Integrin alpha-2; snake 97.9 0.00013 4.5E-09 64.3 12.8 126 101-261 7-147 (200)
22 3zqk_A VON willebrand factor; 97.7 6.3E-05 2.1E-09 66.8 7.5 132 101-272 22-169 (199)
23 1mjn_A Integrin alpha-L; rossm 97.6 0.00027 9.2E-09 61.6 9.7 135 101-271 3-151 (179)
24 3k6s_A Integrin alpha-X; cell 97.2 0.00026 8.7E-09 79.4 6.1 142 101-272 131-287 (1095)
25 1jey_B KU80; double-strand DNA 97.0 0.0025 8.6E-08 66.2 10.8 140 96-262 4-170 (565)
26 1yvr_A RO autoantigen, 60-kDa 97.0 0.013 4.4E-07 60.4 15.3 134 101-265 369-507 (538)
27 1jey_A KU70; double-strand DNA 96.9 0.0058 2E-07 64.2 12.3 146 102-265 37-212 (609)
28 2nvo_A RO sixty-related protei 96.6 0.016 5.6E-07 59.9 12.4 134 101-263 363-501 (535)
29 2ww8_A RRGA, cell WALL surface 90.0 1.1 3.7E-05 49.5 10.0 40 185-224 351-392 (893)
30 2iue_A Pactolus I-domain; memb 74.0 4.9 0.00017 37.1 5.9 103 101-224 4-118 (212)
31 3fcs_B Integrin beta-3; beta p 67.8 4.5 0.00015 43.5 4.7 50 175-224 200-256 (690)
32 3rag_A Uncharacterized protein 63.0 4.7 0.00016 38.2 3.3 42 210-263 9-50 (242)
33 3rag_A Uncharacterized protein 51.3 3.4 0.00012 39.2 0.2 83 101-207 135-228 (242)
34 3k6s_B Integrin beta-2; cell r 48.1 25 0.00087 37.7 6.3 18 97-115 102-119 (687)
35 3t3p_B Integrin beta-3; integr 40.5 24 0.00082 36.4 4.5 18 97-115 109-126 (472)
36 3otr_A Enolase; structural gen 32.8 65 0.0022 33.1 6.2 147 82-256 227-381 (452)
37 3qtp_A Enolase 1; glycolysis, 29.2 98 0.0033 31.7 6.8 145 82-256 223-378 (441)
38 2z73_A Rhodopsin; visual pigme 28.7 12 0.00041 35.7 0.0 36 28-65 398-433 (448)
39 1byk_A Protein (trehalose oper 27.0 3E+02 0.01 23.5 9.9 61 192-268 16-76 (255)
40 3egc_A Putative ribose operon 23.3 3.6E+02 0.012 23.5 8.8 62 192-270 22-83 (291)
41 3m0m_A L-rhamnose isomerase; b 22.8 1.1E+02 0.0037 31.1 5.7 103 154-262 52-183 (438)
42 1o98_A 2,3-bisphosphoglycerate 20.5 1.1E+02 0.0039 31.6 5.4 33 192-224 92-124 (511)
43 2qu7_A Putative transcriptiona 20.5 2.8E+02 0.0095 24.2 7.4 61 193-270 22-82 (288)
44 3v4v_B Integrin beta-7; cell a 20.2 69 0.0024 33.4 3.7 107 101-224 133-275 (503)
No 1
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.62 E-value=6.7e-07 Score=83.80 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=99.9
Q ss_pred eeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccCC---CCccceeecCCCC--------CC
Q 016250 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPY-EQAISIIGKTLAVFDE---DNLIPCYGFGDGG--------RF 167 (392)
Q Consensus 100 s~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~Y-qqAI~~Ig~vl~~yDd---D~~ipvfGFGa~~--------~~ 167 (392)
.+++++.||-|+||+.. .+ +.+...+..++..|+. +-.|-++.|+... ..
T Consensus 21 ~~div~vlD~SgSM~~~------------------~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~ 82 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRH------------------NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA 82 (281)
T ss_dssp CEEEEEEEECCCCSSTH------------------HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC
T ss_pred ceeEEEEEeCCCCcCHH------------------HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC
Confidence 37899999999999621 23 5555555566666654 6679999999871 11
Q ss_pred cCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCC---ccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 016250 168 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG---QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 244 (392)
Q Consensus 168 c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~---~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI 244 (392)
-.+.+.++++-.++.......|-|+....|+.|.+.....+. .-.++|+||||..++ .....+++
T Consensus 83 ~~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~~~~~~ 150 (281)
T 4hqf_A 83 SKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQDSLKES 150 (281)
T ss_dssp SSCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHHHHHHH
T ss_pred ccCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHHHHHHH
Confidence 124566666555443334468999999999999887765432 457889999998875 34556666
Q ss_pred HHhcCCCcEEEEEecccC-CcccccccCC
Q 016250 245 VKASELPLSIVLVGVGDG-PWDMMKEFDD 272 (392)
Q Consensus 245 v~AS~lPLSII~VGVGdg-~F~~M~~LDd 272 (392)
.++-..-+-|..||||+. +-+.|+.+-+
T Consensus 151 ~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 151 RKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 666677899999999985 5666676643
No 2
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.57 E-value=1.8e-07 Score=87.41 Aligned_cols=141 Identities=13% Similarity=0.224 Sum_probs=98.0
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccC---CCCccceeecCCCCC---CcC----
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPY-EQAISIIGKTLAVFD---EDNLIPCYGFGDGGR---FCY---- 169 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~Y-qqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~~---~c~---- 169 (392)
+++++.||-|+||+. ..+ +++...+..++..|+ ++-.|-++.|+.... ...
T Consensus 19 ~DivfvlD~SgSM~~------------------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~ 80 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGY------------------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQS 80 (266)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHH
T ss_pred eeEEEEEECCCCcCh------------------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCc
Confidence 689999999999962 123 355566666666676 567889999998711 111
Q ss_pred -CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc---CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 170 -GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS---GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 170 -G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s---~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
..+.++++-.++.......|.|+....|+.|.+..+.. ...-.++|+||||..++ .....+++.
T Consensus 81 ~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~~~~~a~ 148 (266)
T 4hqo_A 81 IDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYRALEVAN 148 (266)
T ss_dssp HCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHHHHHHHH
T ss_pred cCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chHHHHHHH
Confidence 24555555444322224679999999999998887664 23457899999999875 345667777
Q ss_pred HhcCCCcEEEEEecccC-CcccccccC
Q 016250 246 KASELPLSIVLVGVGDG-PWDMMKEFD 271 (392)
Q Consensus 246 ~AS~lPLSII~VGVGdg-~F~~M~~LD 271 (392)
++-+..+.|..||||+. +-+.|+++-
T Consensus 149 ~l~~~gi~i~~iGiG~~~~~~~L~~iA 175 (266)
T 4hqo_A 149 KLKQRNVRLAVIGIGQGINHQFNRLIA 175 (266)
T ss_dssp HHHHTTCEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHCCCEEEEEecCcccCHHHHHHhh
Confidence 77778899999999985 344445554
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=3e-07 Score=81.54 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=96.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC----CCCcCCHHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG----GRFCYGFEEVLS 176 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~----~~~c~G~egVL~ 176 (392)
.++++.||.|+||...+ ..++..+.|...+..++..+. +..+-++.|+.. -+...+.+.+.+
T Consensus 12 ~~iv~vlD~SgSM~~~d-------------~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~~~~~~~~~ 77 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQD-------------VQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPITSDYISAKM 77 (218)
T ss_dssp CEEEEEEECSGGGGCCS-------------SSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEESCHHHHHH
T ss_pred CcEEEEEECCcCccccc-------------CCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCCCCHHHHHH
Confidence 67999999999997421 124677888888888888776 558999999987 122345555555
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEE
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~ 256 (392)
.-..+-+.+...|.|+....|+.+.+........-.++|+||||..++. ...+++..+.+..+.|..
T Consensus 78 ~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~~~~~~i~v~~ 144 (218)
T 3ibs_A 78 FLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKAAAEKGIQVSV 144 (218)
T ss_dssp HHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHHHHTTTEEEEE
T ss_pred HHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHHHHhcCCEEEE
Confidence 4444434444578999999999998776655444578899999987651 233455556677899999
Q ss_pred EecccC
Q 016250 257 VGVGDG 262 (392)
Q Consensus 257 VGVGdg 262 (392)
||||+.
T Consensus 145 igig~~ 150 (218)
T 3ibs_A 145 LGVGMP 150 (218)
T ss_dssp EEESCT
T ss_pred EEecCC
Confidence 999974
No 4
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.48 E-value=1.2e-06 Score=75.58 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=94.0
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC----CCcCCHHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG----RFCYGFEEVLS 176 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~----~~c~G~egVL~ 176 (392)
+++++.||-|+||... + ....+++..+...+ ..++-.+-++.|+... +...+.+.+.+
T Consensus 8 ~div~vlD~SgSM~~~-----------~-----~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~l~~~~~~~~~ 69 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHH-----------W-----NEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGTTLMKLTEDREQIRQ 69 (185)
T ss_dssp EEEEEEEECSGGGGGG-----------H-----HHHHHHHHHHHHHC--CCTTEEEEEEEESSSEEEEEEEECCHHHHHH
T ss_pred eeEEEEEeCCCChhhh-----------H-----HHHHHHHHHHHHHh--CCCCcEEEEEEEecCceEEeccCCCHHHHHH
Confidence 6899999999999520 0 11233333333333 2345688999999871 22235566655
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHH--hcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCc
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVE--QSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPL 252 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive--~s~--~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPL 252 (392)
+-.++. .+...|.|+....|+.+.+... ..+ ..-.++|+||||..++.. .....+++..+.+..+
T Consensus 70 ~i~~l~-~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~----------~~~~~~~~~~~~~~gi 138 (185)
T 3n2n_F 70 GLEELQ-KVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDL----------FFYSEREANRSRDLGA 138 (185)
T ss_dssp HHHHHH-TCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHH----------HHHHHHHHHHHHHTTE
T ss_pred HHHHHh-hhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCc----------ccchHHHHHHHHHCCC
Confidence 544433 2245799999999999998652 222 245788999999987521 1233556666677889
Q ss_pred EEEEEecccCCcccccccCC
Q 016250 253 SIVLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 253 SII~VGVGdg~F~~M~~LDd 272 (392)
-|..||||+.+...|+++-+
T Consensus 139 ~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 139 IVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp EEEEEECSSCCHHHHTTTSS
T ss_pred EEEEEEeccCCHHHHHHHhC
Confidence 99999999878777777753
No 5
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.45 E-value=1e-06 Score=75.75 Aligned_cols=143 Identities=13% Similarity=0.142 Sum_probs=95.1
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC----CCcCCHHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG----RFCYGFEEVLS 176 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~----~~c~G~egVL~ 176 (392)
.++++.||.|+||... .. ...+.|...+..++. .+..+-++.|+... +.-.+.+.+.+
T Consensus 7 ~dvv~vlD~SgSM~~~-----------~~----~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~~~~~~~~~~~~~~~ 68 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN-----------WI----EIYNFVQQLAERFVS---PEMRLSFIVFSSQATIILPLTGDRGKISK 68 (182)
T ss_dssp EEEEEEEECSGGGGGG-----------HH----HHHHHHHHHHHHCCC---TTEEEEEEEESSSEEEEEEEECCHHHHHH
T ss_pred eeEEEEEECCCCcccC-----------HH----HHHHHHHHHHHHhcC---CCceEEEEEeCCCceEEECCCCCHHHHHH
Confidence 6899999999999521 00 112333333333433 56788999999871 22244444444
Q ss_pred HHHhhcCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 016250 177 RYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 254 (392)
Q Consensus 177 aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s--~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSI 254 (392)
+-..+ ..+...|.|+....|+.+.+..... ...-.++++||||..++. ......+++..+....+.|
T Consensus 69 ~l~~l-~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~~~~~~~i~i 137 (182)
T 1shu_X 69 GLEDL-KRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAKISRSLGASV 137 (182)
T ss_dssp HHHHH-HTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHHHHHHTTCEE
T ss_pred HHHhc-ccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHHHHHhCCCEE
Confidence 33332 2345679999999999999987654 234578899999987652 1233455666667788999
Q ss_pred EEEecccCCcccccccCC
Q 016250 255 VLVGVGDGPWDMMKEFDD 272 (392)
Q Consensus 255 I~VGVGdg~F~~M~~LDd 272 (392)
..||||+.+...|+++-+
T Consensus 138 ~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 138 YCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp EEEECSSCCHHHHHHHSS
T ss_pred EEEeCCcCCHHHHHHHhC
Confidence 999999888888887753
No 6
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.36 E-value=4.5e-07 Score=79.23 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=92.2
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc-CCCCccceeecCCCCCCcCCHHHHH--HH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF-DEDNLIPCYGFGDGGRFCYGFEEVL--SR 177 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y-DdD~~ipvfGFGa~~~~c~G~egVL--~a 177 (392)
.++++.||-|+||... .++.++..+-.++..+ .++-.+-++.|+........+...- +.
T Consensus 10 ~div~vlD~SgSM~~~------------------~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~ 71 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSR------------------NFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSN 71 (198)
T ss_dssp EEEEEEEECCTTSCHH------------------HHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHHHHHCSS
T ss_pred eeEEEEEECCCCCCHH------------------HHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCccCCHHH
Confidence 6899999999999621 2456666666667777 5778899999998732222332211 12
Q ss_pred HHhhcCcee-ecCCCChHHHHHHHHHH-HHhc----CCccEEEEEEeCCccc-cccccccCCCChhHHHHHHHHHHhcCC
Q 016250 178 YREIVPNLK-LAGPTSFAPVIEMAMSI-VEQS----GGQYHVLLIIADGQVT-RSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 178 Yr~~l~~v~-LsGPT~FaPVI~~ai~i-ve~s----~~~Y~VLLIITDG~It-d~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
..+.+..+. ..|.|+....|+.+.+. .... ...-.++|+||||..+ +.. ...+++..+.+.
T Consensus 72 ~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~------------~~~~~~~~~~~~ 139 (198)
T 1n3y_A 72 PLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL------------DYKDVIPMADAA 139 (198)
T ss_dssp GGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS------------CHHHHHHHHHHT
T ss_pred HHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc------------cHHHHHHHHHHC
Confidence 233344444 67999999999999844 3332 2345788999999887 321 122344455567
Q ss_pred CcEEEEEecccCC-----cccccccC
Q 016250 251 PLSIVLVGVGDGP-----WDMMKEFD 271 (392)
Q Consensus 251 PLSII~VGVGdg~-----F~~M~~LD 271 (392)
.+-|..||||+.. ...|+++-
T Consensus 140 gi~i~~igvG~~~~~~~~~~~L~~iA 165 (198)
T 1n3y_A 140 GIIRYAIGVGLAFQNRNSWKELNDIA 165 (198)
T ss_dssp TCEEEEEEESGGGGSSTTHHHHHHHS
T ss_pred CCEEEEEEccccccccccHHHHHHHH
Confidence 8899999999864 45666554
No 7
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.35 E-value=4.6e-06 Score=72.72 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=87.2
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceeecCCCC----C--CcC--
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDGG----R--FCY-- 169 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDd---D~~ipvfGFGa~~----~--~c~-- 169 (392)
.+++++||-|+|++. ..++.+...+..++..|+. .-.+-++.|+... + ...
T Consensus 18 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~ 79 (178)
T 2xgg_A 18 LDICFLIDSSGSIGI------------------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAV 79 (178)
T ss_dssp EEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGS
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCcc
Confidence 789999999999952 1356677777777777763 3688999999871 1 111
Q ss_pred CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 016250 170 GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 244 (392)
Q Consensus 170 G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI 244 (392)
..++++++-.++ +. ..|.|+....|+.|.+..... ...-.++|+||||..++ .....+++
T Consensus 80 ~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~~~~~~~ 144 (178)
T 2xgg_A 80 DKQLAAHAVLDM-PY--KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DFRTVRAA 144 (178)
T ss_dssp CHHHHHHHHHHC-CC--CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HHHHSHHH
T ss_pred CHHHHHHHHHhC-CC--CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------CccHHHHH
Confidence 455665544332 21 568999999999999874321 12347889999999875 12344445
Q ss_pred HHhcCCCcEEEEEecccC
Q 016250 245 VKASELPLSIVLVGVGDG 262 (392)
Q Consensus 245 v~AS~lPLSII~VGVGdg 262 (392)
.++-+..+-|..||||+.
T Consensus 145 ~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 145 KEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HHHHHTTCEEEEEECC--
T ss_pred HHHHHCCCEEEEEEcCCc
Confidence 555566899999999974
No 8
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.32 E-value=1.2e-06 Score=89.39 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=102.2
Q ss_pred eeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC----CCcCCH----
Q 016250 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG----RFCYGF---- 171 (392)
Q Consensus 100 s~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~----~~c~G~---- 171 (392)
.+++++.||.|+||.+. .+..+.|...+..++..+.++..|-++.|+..- +...++
T Consensus 77 ~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~ 140 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRAD 140 (464)
T ss_dssp CEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECS
T ss_pred CceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCC
Confidence 37899999999999631 244677777777778888777889999999871 111111
Q ss_pred HHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC
Q 016250 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP 251 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP 251 (392)
..-.+.-++.+..+...|.|++...|+.+.+...+....-.++|+||||..++. ....+....++....
T Consensus 141 ~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~~~a~~~~ 209 (464)
T 4fx5_A 141 YQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARAIQSSIGN 209 (464)
T ss_dssp HHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHHHHHhcCC
Confidence 122233344455666789999999999999988766555578899999997641 122344445566778
Q ss_pred cEEEEEecccC-CcccccccC
Q 016250 252 LSIVLVGVGDG-PWDMMKEFD 271 (392)
Q Consensus 252 LSII~VGVGdg-~F~~M~~LD 271 (392)
+.|..||||.. +.+.|+++-
T Consensus 210 i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 210 FTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp CEEEEEEESSSSCHHHHHHHH
T ss_pred CeEEEEEeCCccCHHHHHHHH
Confidence 99999999954 666777664
No 9
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.28 E-value=2.2e-06 Score=75.87 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=94.9
Q ss_pred eeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC--------CCCcCCH
Q 016250 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG--------GRFCYGF 171 (392)
Q Consensus 100 s~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~--------~~~c~G~ 171 (392)
.++++++||.|+||.+. . .....+++..+...+..++.+-.+-++.|+.. .+...+.
T Consensus 15 ~~div~vlD~SgSM~~~-----------~----~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~ 79 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGAS-----------N----FTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNA 79 (223)
T ss_dssp CEEEEEEEECSTTTCHH-----------H----HHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCH
T ss_pred ceeEEEEEeCCCCCchH-----------H----HHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCH
Confidence 47899999999999632 0 11224444555444555566678999999987 1222345
Q ss_pred HHHHHHHHhhcCce-eecCCCChHHHHHHHHHHHHhcC--------CccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 016250 172 EEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVEQSG--------GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 242 (392)
Q Consensus 172 egVL~aYr~~l~~v-~LsGPT~FaPVI~~ai~ive~s~--------~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tid 242 (392)
+.+.++-..+-+.. ...|.|+....|+.+.+...... ..-.++|+||||..+...| .....+
T Consensus 80 ~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~---------~~~~~~ 150 (223)
T 1q0p_A 80 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD---------PITVID 150 (223)
T ss_dssp HHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC---------THHHHH
T ss_pred HHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC---------hHHHHH
Confidence 56665544433221 24799999999999998876431 2347889999998763111 233344
Q ss_pred HHHH----------hcCCCcEEEEEeccc-CCcccccccC
Q 016250 243 AIVK----------ASELPLSIVLVGVGD-GPWDMMKEFD 271 (392)
Q Consensus 243 aIv~----------AS~lPLSII~VGVGd-g~F~~M~~LD 271 (392)
.+.+ +.+..+-|..||||+ .+...|+++-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA 190 (223)
T 1q0p_A 151 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALA 190 (223)
T ss_dssp HHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHS
T ss_pred HHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHh
Confidence 4433 334678899999996 4666677664
No 10
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.23 E-value=5.4e-06 Score=72.49 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=92.2
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCCC----C--CcCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDGG----R--FCYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~----~--~c~G~ 171 (392)
+++++.||-|+|++. +.++.+...+..++..++ ++-.+-++.|+... + .....
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~ 67 (189)
T 1atz_A 6 LDVILLLDGSSSFPA------------------SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEK 67 (189)
T ss_dssp EEEEEEEECSSSSCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCH
T ss_pred eeEEEEEeCCCCCCh------------------hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCH
Confidence 689999999999952 235666666666677665 23578899998871 1 13456
Q ss_pred HHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 246 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~ 246 (392)
+.+.++-..+- . ..|.|+....|+.|.+..... .+.-.++||||||..++. ..+..+.+
T Consensus 68 ~~~~~~i~~l~-~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~~~~~~~-- 131 (189)
T 1atz_A 68 AHLLSLVDVMQ-R--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VDAAADAA-- 131 (189)
T ss_dssp HHHHHHHHTCC-C--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CHHHHHHH--
T ss_pred HHHHHHHHhCc-C--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HHHHHHHH--
Confidence 66666554432 1 468899999999999887542 223567888999987652 23444444
Q ss_pred hcCCCcEEEEEeccc-CCcccccccC
Q 016250 247 ASELPLSIVLVGVGD-GPWDMMKEFD 271 (392)
Q Consensus 247 AS~lPLSII~VGVGd-g~F~~M~~LD 271 (392)
.+..+-|..||||+ .+-..|+.+-
T Consensus 132 -~~~gi~v~~igvG~~~~~~~L~~iA 156 (189)
T 1atz_A 132 -RSNRVTVFPIGIGDRYDAAQLRILA 156 (189)
T ss_dssp -HHTTEEEEEEEESSSSCHHHHHHHT
T ss_pred -HHCCCEEEEEEcCCcCCHHHHHHHH
Confidence 45688999999998 4555666553
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=8e-06 Score=78.61 Aligned_cols=158 Identities=9% Similarity=0.155 Sum_probs=111.4
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceeecCCCC-----CCcCCHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA---VFDEDNLIPCYGFGDGG-----RFCYGFEE 173 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~---~yDdD~~ipvfGFGa~~-----~~c~G~eg 173 (392)
.+||+||-|.||... +-.+|-++.+..++-.++. .-+....+-+..|+... +.-.....
T Consensus 5 AtViviD~S~SM~~~-------------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~ 71 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNG-------------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGK 71 (268)
T ss_dssp EEEEEECCSSTTSST-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHH
T ss_pred eEEEEEECCHHHhCC-------------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHH
Confidence 378999999999521 1135777766666555555 44556788889897652 22356666
Q ss_pred HHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC
Q 016250 174 VLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP 251 (392)
Q Consensus 174 VL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP 251 (392)
++.+ +..++..|-|++..-|+.|+...+... ..-..+||++||.+.+ ++++.++++.++.+.-
T Consensus 72 il~a----L~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~~l~~lak~lkk~g 136 (268)
T 4b4t_W 72 ILAG----LHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRDELIRLAKTLKKNN 136 (268)
T ss_dssp HHHH----HTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHHHHHHHHHHHHHHT
T ss_pred HHHH----hhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHHHHHHHHHHHHHcC
Confidence 6654 556788999999999999999887542 3345568888988765 3678888899999999
Q ss_pred cEEEEEecccCC--cccccccCCCCCCccccceecccc
Q 016250 252 LSIVLVGVGDGP--WDMMKEFDDNIPARAFDNFQFVNF 287 (392)
Q Consensus 252 LSII~VGVGdg~--F~~M~~LDd~l~~R~~DNvqFV~f 287 (392)
|+|-+||+|.++ -+.|++|-+...+-.-|+.+||..
T Consensus 137 I~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 137 VAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp EEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred CEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 999999999754 456777643333333477777765
No 12
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.19 E-value=8e-07 Score=77.93 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=90.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC-CCCccceeecCCCCCCcCCHHHHH--HH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD-EDNLIPCYGFGDGGRFCYGFEEVL--SR 177 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD-dD~~ipvfGFGa~~~~c~G~egVL--~a 177 (392)
+++++.||-|+|+.. ..++++...+..++..|+ ++-.+-++.|+........+...- +.
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~~~~~~ 67 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIP------------------HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPN 67 (194)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHHHSCC
T ss_pred eeEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCcCCHHH
Confidence 689999999999952 135666666666777775 345799999998732222332211 11
Q ss_pred HHhhcCcee-ecCCCChHHHHHHHHHHH-Hh-c---CCccEEEEEEeCCccc-cccccccCCCChhHHHHHHHHHHhcCC
Q 016250 178 YREIVPNLK-LAGPTSFAPVIEMAMSIV-EQ-S---GGQYHVLLIIADGQVT-RSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 178 Yr~~l~~v~-LsGPT~FaPVI~~ai~iv-e~-s---~~~Y~VLLIITDG~It-d~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
..+.+..+. ..|.|+....|+.|.+.. .. . ...-.++|+||||..+ |..+ .. +++.++-+.
T Consensus 68 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~---------~~---~~~~~~~~~ 135 (194)
T 1mf7_A 68 PRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG---------YE---DVIPEADRE 135 (194)
T ss_dssp HHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------GG---GTHHHHHHT
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh---------hH---HHHHHHHHC
Confidence 223344555 479999999999998643 22 1 1235788999999987 4211 12 233444557
Q ss_pred CcEEEEEecccCC-----cccccccC
Q 016250 251 PLSIVLVGVGDGP-----WDMMKEFD 271 (392)
Q Consensus 251 PLSII~VGVGdg~-----F~~M~~LD 271 (392)
.+-|..||||+.. .+.|+++-
T Consensus 136 gi~v~~igvG~~~~~~~~~~~L~~iA 161 (194)
T 1mf7_A 136 GVIRYVIGVGDAFRSEKSRQELNTIA 161 (194)
T ss_dssp TEEEEEEEESGGGCSHHHHHHHHHHS
T ss_pred CCEEEEEEecccccccccHHHHHHHh
Confidence 8999999999853 45566554
No 13
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.18 E-value=6.8e-06 Score=73.19 Aligned_cols=139 Identities=11% Similarity=0.125 Sum_probs=91.6
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCCC----C--CcCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDGG----R--FCYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~----~--~c~G~ 171 (392)
+++++.||-|+|++. +.++++...+..++..|+ ++-.+-+..|+... + .....
T Consensus 14 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~ 75 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSE------------------AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRP 75 (202)
T ss_dssp EEEEEEEECBTTSCH------------------HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCH
T ss_pred ccEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCH
Confidence 689999999999952 235677777777777776 45589999999861 1 11345
Q ss_pred HHHHHHHHhhcCcee-ecC-CCChHHHHHHHHHHH-Hhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLK-LAG-PTSFAPVIEMAMSIV-EQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 246 (392)
Q Consensus 172 egVL~aYr~~l~~v~-LsG-PT~FaPVI~~ai~iv-e~s--~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~ 246 (392)
+.+.++-.+ ++ ..| .|+....|+.+.+.. .+. ...-.++|+||||.-++.. .+...+++.+
T Consensus 76 ~~~~~~i~~----l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~----------~~~~~~~a~~ 141 (202)
T 1ijb_A 76 SELRRIASQ----VKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM----------SRNFVRYVQG 141 (202)
T ss_dssp HHHHHHHHT----CCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG----------CTTHHHHHHH
T ss_pred HHHHHHHHh----CcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc----------hHHHHHHHHH
Confidence 555554333 33 345 499999999987543 221 2345789999999876410 1123344444
Q ss_pred hcCCCcEEEEEeccc-CCcccccccC
Q 016250 247 ASELPLSIVLVGVGD-GPWDMMKEFD 271 (392)
Q Consensus 247 AS~lPLSII~VGVGd-g~F~~M~~LD 271 (392)
+-+..+-|..||||+ .+.+.|+.+-
T Consensus 142 l~~~gi~i~~igvG~~~~~~~L~~iA 167 (202)
T 1ijb_A 142 LKKKKVIVIPVGIGPHANLKQIRLIE 167 (202)
T ss_dssp HHHTTEEEEEEEESTTSCHHHHHHHH
T ss_pred HHHCCCEEEEEecCCcCCHHHHHHHh
Confidence 445789999999996 4666676663
No 14
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.15 E-value=2.1e-05 Score=70.77 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=86.1
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCC-----CC-CcCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDG-----GR-FCYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~-----~~-~c~G~ 171 (392)
++++++||-|+||.. ++++...+..++..++ ++-.+-++.|+.. .. .....
T Consensus 23 ~div~vlD~SgSM~~--------------------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~ 82 (223)
T 2b2x_A 23 LDIVIVLDGSNSIYP--------------------WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSST 82 (223)
T ss_dssp EEEEEEEECSTTCCC--------------------HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSH
T ss_pred ceEEEEEECCCChhh--------------------HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCH
Confidence 689999999999940 4666666666777765 5778999999987 11 11345
Q ss_pred HHHHHHHHhhcCcee-ecC-CCChHHHHHHHHHH-HHh----cCCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLK-LAG-PTSFAPVIEMAMSI-VEQ----SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 244 (392)
Q Consensus 172 egVL~aYr~~l~~v~-LsG-PT~FaPVI~~ai~i-ve~----s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI 244 (392)
++++++- ..+. ..| .|+....|+.|.+. ... ....-.++|+||||..++.. ...+++
T Consensus 83 ~~~~~~i----~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~------------~~~~~~ 146 (223)
T 2b2x_A 83 EEVLVAA----NKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY------------RLKQVI 146 (223)
T ss_dssp HHHHHHH----TTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG------------GHHHHH
T ss_pred HHHHHHH----HhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------------cHHHHH
Confidence 5665543 3343 345 49999999999876 331 12334788999999987621 233444
Q ss_pred HHhcCCCcEEEEEecccC
Q 016250 245 VKASELPLSIVLVGVGDG 262 (392)
Q Consensus 245 v~AS~lPLSII~VGVGdg 262 (392)
.++-+..+-|..||||+.
T Consensus 147 ~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 147 QDCEDENIQRFSIAILGH 164 (223)
T ss_dssp HHHHTTTEEEEEEEECGG
T ss_pred HHHHHCCCEEEEEEecCc
Confidence 555567899999999974
No 15
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.14 E-value=1.3e-07 Score=82.49 Aligned_cols=147 Identities=15% Similarity=0.180 Sum_probs=89.9
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceeecCCC-----CCCcCCHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDG-----GRFCYGFEEV 174 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~-yDdD~~ipvfGFGa~-----~~~c~G~egV 174 (392)
.++++.||.|+||. | +..+.|...+..++.. +..+..+-++.|+.. -+...+.+.+
T Consensus 6 ~~vv~vlD~SgSM~--~----------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~ 67 (189)
T 2x31_A 6 RVLIFAVDASGSAA--V----------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSRSLTQT 67 (189)
T ss_dssp CEEEEEEECCTTSC--C------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCSCHHHH
T ss_pred eEEEEEEECCCCCC--c----------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCCCHHHH
Confidence 57899999999994 1 1123444444444433 366778999999963 1223456665
Q ss_pred HHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChh-HHHHHHHHHHhcCCC
Q 016250 175 LSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQ-EQKTVDAIVKASELP 251 (392)
Q Consensus 175 L~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--~~Y~VLLIITDG~Itd~vd~~~~~~~~d-~~~TidaIv~AS~lP 251 (392)
.+.- ..+...|.|++...|+.+.+..++.. +.-.++|+||||..++..+..... .+ .++..+++..+.+..
T Consensus 68 ~~~i----~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g 141 (189)
T 2x31_A 68 KRQL----QGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANR--ELAGEQATKVARAIRASG 141 (189)
T ss_dssp HHHH----HHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHH--GGGTCCCEEEEECTGGGG
T ss_pred HHHH----hcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccc--cchhHHHHHHHHHHHHcC
Confidence 5433 34456799999999999999887643 235688999999877532100000 00 001112222333456
Q ss_pred cEEEEEecccCCcccccccC
Q 016250 252 LSIVLVGVGDGPWDMMKEFD 271 (392)
Q Consensus 252 LSII~VGVGdg~F~~M~~LD 271 (392)
+.|..||+|+.+...|++|-
T Consensus 142 i~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 142 MPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp SCCTHHHHHHSSCSSSCSTT
T ss_pred CeEEEEecCCCCHHHHHHHH
Confidence 78888999988777777664
No 16
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.13 E-value=5.1e-06 Score=83.36 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=97.9
Q ss_pred eeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceeecCCCC----C----Cc
Q 016250 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---DEDNLIPCYGFGDGG----R----FC 168 (392)
Q Consensus 100 s~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---DdD~~ipvfGFGa~~----~----~c 168 (392)
.++++++||-|+||.. ..+++|.+.+..++..+ ..+-.+-+..|+... + .-
T Consensus 9 ~~divfvlD~SgSM~~------------------~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~ 70 (509)
T 2odp_A 9 HLNLYLLLDASQSVSE------------------NDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNS 70 (509)
T ss_dssp EEEEEEEEECSTTSCH------------------HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGG
T ss_pred CeeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCC
Confidence 4789999999999952 13466666666666665 678889999999871 1 11
Q ss_pred CCHHHHHHHHHhhcCceee-cCCCChHHHHHHHHHHHHhcC-----------CccEEEEEEeCCccccccccccCCCChh
Q 016250 169 YGFEEVLSRYREIVPNLKL-AGPTSFAPVIEMAMSIVEQSG-----------GQYHVLLIIADGQVTRSVDTVRGCLSPQ 236 (392)
Q Consensus 169 ~G~egVL~aYr~~l~~v~L-sGPT~FaPVI~~ai~ive~s~-----------~~Y~VLLIITDG~Itd~vd~~~~~~~~d 236 (392)
...+.++++-.++-..... .|.|+....|+.|.+..+... ..-.++|+||||.-++.. +
T Consensus 71 ~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~---------~ 141 (509)
T 2odp_A 71 RDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG---------S 141 (509)
T ss_dssp GCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS---------C
T ss_pred CCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC---------C
Confidence 2556666554433222111 388999999999998764321 123788999999876522 1
Q ss_pred HHHHHHHHHHh------cCCCcEEEEEeccc--CCcccccccCC
Q 016250 237 EQKTVDAIVKA------SELPLSIVLVGVGD--GPWDMMKEFDD 272 (392)
Q Consensus 237 ~~~TidaIv~A------S~lPLSII~VGVGd--g~F~~M~~LDd 272 (392)
..+..+.+.+. .+..+-|..||||+ .+.+.|+++-.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~ 185 (509)
T 2odp_A 142 PKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGS 185 (509)
T ss_dssp THHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSC
T ss_pred hhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhcc
Confidence 34455555542 26678899999998 57888888764
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.10 E-value=3.5e-05 Score=68.67 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=85.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCC-----CC-CcCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDG-----GR-FCYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~-----~~-~c~G~ 171 (392)
++++++||-|+||.. ++.+...+-.++..++ ++-.+-++.|+.. +. .....
T Consensus 8 ~div~vlD~SgSm~~--------------------~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~ 67 (213)
T 1pt6_A 8 LDIVIVLDGSNSIYP--------------------WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSST 67 (213)
T ss_dssp EEEEEEEECCTTCCC--------------------HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSH
T ss_pred ccEEEEEECCCChhh--------------------HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCH
Confidence 689999999999940 3555555666666664 6778999999987 11 12345
Q ss_pred HHHHHHHHhhcCcee-ecC-CCChHHHHHHHHHH-HHh----cCCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLK-LAG-PTSFAPVIEMAMSI-VEQ----SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 244 (392)
Q Consensus 172 egVL~aYr~~l~~v~-LsG-PT~FaPVI~~ai~i-ve~----s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaI 244 (392)
++++++-.. +. ..| .|+....|+.|.+. ... ....-.++|+||||..++. ....+++
T Consensus 68 ~~~~~~i~~----l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------------~~~~~~~ 131 (213)
T 1pt6_A 68 EEVLVAAKK----IVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------HRLKKVI 131 (213)
T ss_dssp HHHHHHHHT----CCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS------------HHHHHHH
T ss_pred HHHHHHHHh----ccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------ccHHHHH
Confidence 666655443 33 356 49999999999875 331 1234578899999988762 1234445
Q ss_pred HHhcCCCcEEEEEecccC
Q 016250 245 VKASELPLSIVLVGVGDG 262 (392)
Q Consensus 245 v~AS~lPLSII~VGVGdg 262 (392)
.++.+..+-|..||||+.
T Consensus 132 ~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 132 QDCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHHTTEEEEEEEECHH
T ss_pred HHHHHCCCEEEEEEeccc
Confidence 555567889999999963
No 18
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.04 E-value=3.1e-05 Score=70.15 Aligned_cols=157 Identities=13% Similarity=0.182 Sum_probs=105.2
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceeecCCC-----CCCcCCHHH
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---DEDNLIPCYGFGDG-----GRFCYGFEE 173 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~y---DdD~~ipvfGFGa~-----~~~c~G~eg 173 (392)
.++++||.|.||... +-.+|..+.|...+..++..| .....+-+..|++. -+.-.+.+.
T Consensus 4 ~lvlvlD~S~SM~~~-------------D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~ 70 (192)
T 2x5n_A 4 ATMILIDNSEWMING-------------DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGK 70 (192)
T ss_dssp EEEEEECCSGGGGCT-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHH
T ss_pred EEEEEEECCHhhccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHH
Confidence 589999999999632 113677888877776655544 34568899999874 133356666
Q ss_pred HHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcC--Ccc-EEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCC
Q 016250 174 VLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQY-HVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 174 VL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~--~~Y-~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
++++- ..+...|.|++...|+.|.+..++.. ... -|+|+++|+. ++ +..+..+++..+.+.
T Consensus 71 i~~~L----~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~~a~~lk~~ 134 (192)
T 2x5n_A 71 FLSAM----HDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIRLAKRMKKN 134 (192)
T ss_dssp HHHHH----TTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHHHHHHHHHT
T ss_pred HHHHH----HcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHHHHHHHHHC
Confidence 66543 34677899999999999999887653 223 3445555543 32 245667778888889
Q ss_pred CcEEEEEecccCCccc-ccccCCCCCCccccceecccchh
Q 016250 251 PLSIVLVGVGDGPWDM-MKEFDDNIPARAFDNFQFVNFTE 289 (392)
Q Consensus 251 PLSII~VGVGdg~F~~-M~~LDd~l~~R~~DNvqFV~f~d 289 (392)
-+.|.+||+|..+... |+.|=+... .-||-+||...+
T Consensus 135 gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~ 172 (192)
T 2x5n_A 135 NVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPP 172 (192)
T ss_dssp TEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecC
Confidence 9999999999876532 777643222 137888886544
No 19
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.99 E-value=2.4e-05 Score=81.81 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=92.8
Q ss_pred eeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC----CC----cCCH
Q 016250 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG----RF----CYGF 171 (392)
Q Consensus 100 s~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~----~~----c~G~ 171 (392)
.++++++||-|+||... . .....+++..+..-|..+++.-.|-+.-|+... +. -...
T Consensus 243 ~~div~vlD~SgSM~~~--------~-------~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~ 307 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGAS--------D-------FTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNA 307 (741)
T ss_dssp EEEEEEEEECSTTTCHH--------H-------HHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCH
T ss_pred ceeEEEEeccCCccccc--------c-------hHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCH
Confidence 37899999999999521 0 112244444444444444555679999999861 11 1245
Q ss_pred HHHHHHHHhhcCcee-ecCCCChHHHHHHHHHHHHh--c------CCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 016250 172 EEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQ--S------GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 242 (392)
Q Consensus 172 egVL~aYr~~l~~v~-LsGPT~FaPVI~~ai~ive~--s------~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~Tid 242 (392)
+.++++..++-.... ..|.|+....|+.|.+.... . ...-.|+|+||||.-+.-. + -...++
T Consensus 308 ~~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~-------~--p~~~~~ 378 (741)
T 3hrz_D 308 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG-------D--PITVID 378 (741)
T ss_dssp HHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS-------C--THHHHH
T ss_pred HHHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC-------C--chHHHH
Confidence 556554333221111 67899999999999988721 1 1234788999999765311 1 244455
Q ss_pred HHH----------HhcCCCcEEEEEeccc-CCcccccccCC
Q 016250 243 AIV----------KASELPLSIVLVGVGD-GPWDMMKEFDD 272 (392)
Q Consensus 243 aIv----------~AS~lPLSII~VGVGd-g~F~~M~~LDd 272 (392)
.|. ++.+..+-|..||||+ .+.+.|++|-.
T Consensus 379 ~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 379 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp HHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred HHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 555 3445678999999997 56677777653
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.97 E-value=2.3e-05 Score=78.03 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=96.1
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceeecCCC--------CCCcC
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA---VFDEDNLIPCYGFGDG--------GRFCY 169 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~---~yDdD~~ipvfGFGa~--------~~~c~ 169 (392)
++++++||-|+||+. +.++.|...+..++. .+..+-.+-++.|+.. .+...
T Consensus 2 ~div~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~ 63 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGA------------------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSS 63 (497)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGG
T ss_pred eeEEEEEECCCCcch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeecccccccc
Confidence 579999999999952 234555555444454 4555678999999987 13335
Q ss_pred CHHHHHHHHHhhcCce-eecCCCChHHHHHHHHHHHHhc--------CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 016250 170 GFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVEQS--------GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 240 (392)
Q Consensus 170 G~egVL~aYr~~l~~v-~LsGPT~FaPVI~~ai~ive~s--------~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~T 240 (392)
+.+.++++-.++-+.- ...|.|+....|+.|.+..... ...-.++|+||||.-++.. +..+.
T Consensus 64 ~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~---------~~~~~ 134 (497)
T 1rrk_A 64 NADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---------DPITV 134 (497)
T ss_dssp CHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS---------CTHHH
T ss_pred CHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC---------ChhHH
Confidence 5667776655544322 2568899999999999887321 1234788999999876421 13455
Q ss_pred HHHHHHh----------cCCCcEEEEEeccc-CCcccccccCC
Q 016250 241 VDAIVKA----------SELPLSIVLVGVGD-GPWDMMKEFDD 272 (392)
Q Consensus 241 idaIv~A----------S~lPLSII~VGVGd-g~F~~M~~LDd 272 (392)
.+.+.+. -+..+-|..||||+ .+.+.|++|-.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 135 IDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp HHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred HHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 5555554 12278899999997 46677777754
No 21
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.91 E-value=0.00013 Score=64.29 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=85.3
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCC-----CC-CcCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDG-----GR-FCYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~-----~~-~c~G~ 171 (392)
++++++||-|+||.. ++++...+..++..++ ++-.+-++.|+.. +. .-...
T Consensus 7 ~div~vlD~SgSm~~--------------------~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~ 66 (200)
T 1v7p_C 7 IDVVVVCDESNSIYP--------------------WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTK 66 (200)
T ss_dssp EEEEEEEECCTTCCC--------------------HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSH
T ss_pred ccEEEEEECCCCccc--------------------HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCH
Confidence 689999999999940 4566666666777776 5778999999987 11 12356
Q ss_pred HHHHHHHHhhcCceeecC-CCChHHHHHHHHHH-HHhc----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAG-PTSFAPVIEMAMSI-VEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsG-PT~FaPVI~~ai~i-ve~s----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
++++++-.++.+ ..| .|+....|+.+.+. .... ...-.++|+||||..++.. ...+++.
T Consensus 67 ~~~~~~i~~l~~---~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~------------~~~~~~~ 131 (200)
T 1v7p_C 67 EEMIVATSQTSQ---YGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS------------MLKAVID 131 (200)
T ss_dssp HHHHHHHHHCCC---CCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG------------GHHHHHH
T ss_pred HHHHHHHHhhhc---cCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc------------cHHHHHH
Confidence 667665543221 235 59999999999885 3321 1235788999999987621 1223444
Q ss_pred HhcCCCcEEEEEeccc
Q 016250 246 KASELPLSIVLVGVGD 261 (392)
Q Consensus 246 ~AS~lPLSII~VGVGd 261 (392)
++-+..+-|..||||+
T Consensus 132 ~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 132 QCNHDNILRFGIAVLG 147 (200)
T ss_dssp HHHHTTEEEEEEEECH
T ss_pred HHHHCCCEEEEEEecc
Confidence 4556789999999964
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.73 E-value=6.3e-05 Score=66.77 Aligned_cols=132 Identities=10% Similarity=0.158 Sum_probs=88.9
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCC-----C-CCcCCH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDG-----G-RFCYGF 171 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~-----~-~~c~G~ 171 (392)
+++++.||-|+|++. +.++++.+.+-.++..|+ ++-.|-+..|+.. + ..-...
T Consensus 22 ~DivfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~ 83 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGE------------------ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSK 83 (199)
T ss_dssp CEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCH
T ss_pred cCEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCH
Confidence 689999999999952 234666666666677774 6778999999987 1 112356
Q ss_pred HHHHHHHHhhcCceeecC-CCChHHHHHHHHHH-HHh-cC---CccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 016250 172 EEVLSRYREIVPNLKLAG-PTSFAPVIEMAMSI-VEQ-SG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 245 (392)
Q Consensus 172 egVL~aYr~~l~~v~LsG-PT~FaPVI~~ai~i-ve~-s~---~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv 245 (392)
++++++-.++ +. ..| -|+....|+.+.+. ... .+ ..-.|+|+||||...|.+.
T Consensus 84 ~~~~~~i~~l-~~--~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~------------------ 142 (199)
T 3zqk_A 84 GDILQRLREI-RY--QGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK------------------ 142 (199)
T ss_dssp HHHHHHHHHC-CC--CCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC------------------
T ss_pred HHHHHHHHhC-cC--CCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH------------------
Confidence 6676665443 21 345 39999999888764 221 11 2237899999998765321
Q ss_pred HhcCCCcEEEEEecc-cCCcccccccCC
Q 016250 246 KASELPLSIVLVGVG-DGPWDMMKEFDD 272 (392)
Q Consensus 246 ~AS~lPLSII~VGVG-dg~F~~M~~LDd 272 (392)
++ ...+-|.-|||| +.+.+.|+++-.
T Consensus 143 ~~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 RL-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp CC-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred HH-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 11 256889999999 667888887753
No 23
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.61 E-value=0.00027 Score=61.64 Aligned_cols=135 Identities=14% Similarity=0.216 Sum_probs=84.8
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCC-ccceeecCCCCCCcCCHHHHHH--H
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDN-LIPCYGFGDGGRFCYGFEEVLS--R 177 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~-~ipvfGFGa~~~~c~G~egVL~--a 177 (392)
+++++.||-|+|++. ..++++...+..++..|+.++ .+-+..|+........+...-. .
T Consensus 3 ~divfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~ 64 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQP------------------DEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKD 64 (179)
T ss_dssp EEEEEEEECBTTCCH------------------HHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCC
T ss_pred ccEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHH
Confidence 579999999999952 135666666666777776554 7999999987222223332211 1
Q ss_pred HHhhcCcee-ecCCCChHHHHHHHHHH-HHhc----CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC
Q 016250 178 YREIVPNLK-LAGPTSFAPVIEMAMSI-VEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP 251 (392)
Q Consensus 178 Yr~~l~~v~-LsGPT~FaPVI~~ai~i-ve~s----~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lP 251 (392)
..+.+..+. +.|.|+....|+.|.+. .... ...-.++++||||..++.++ . .+ ..-
T Consensus 65 ~~~~~~~i~~~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~---------~-------~~--~~~ 126 (179)
T 1mjn_A 65 PDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN---------I-------DA--AKD 126 (179)
T ss_dssp HHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC---------C-------GG--GTT
T ss_pred HHHHHHhcccCCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc---------h-------HH--HCC
Confidence 122233332 46889999999999863 3321 12357889999999876321 0 01 345
Q ss_pred cEEEEEecccCCc-----ccccccC
Q 016250 252 LSIVLVGVGDGPW-----DMMKEFD 271 (392)
Q Consensus 252 LSII~VGVGdg~F-----~~M~~LD 271 (392)
+-|..||||+..- +.|+.+-
T Consensus 127 i~i~~igvG~~~~~~~~~~~L~~iA 151 (179)
T 1mjn_A 127 IIRYIIGIGKHFQTKESQETLHKFA 151 (179)
T ss_dssp SEEEEEEESGGGCSHHHHHTTGGGS
T ss_pred CEEEEEEccccccccccHHHHHHHh
Confidence 7888899997532 5566553
No 24
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.24 E-value=0.00026 Score=79.37 Aligned_cols=142 Identities=20% Similarity=0.305 Sum_probs=92.9
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-CccceeecCCCCCCcCCHHHHH--HH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDED-NLIPCYGFGDGGRFCYGFEEVL--SR 177 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD-~~ipvfGFGa~~~~c~G~egVL--~a 177 (392)
++++++||-|+|+.. +.++++.+.+..++..|+.+ -.|-+..|+..-.....+.... +.
T Consensus 131 ~DIvfvlD~SgSm~~------------------~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~ 192 (1095)
T 3k6s_A 131 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSN 192 (1095)
T ss_dssp EEEEEEEECCTTSCS------------------HHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSC
T ss_pred ccEEEEEcCCCCCCh------------------hHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHH
Confidence 689999999999851 34677777788888888865 5888999988722111222111 00
Q ss_pred HHhhcCce-eecCCCChHHHHHHHHHHH-Hhc-C---CccEEEEEEeCCccc-cccccccCCCChhHHHHHHHHHHhcCC
Q 016250 178 YREIVPNL-KLAGPTSFAPVIEMAMSIV-EQS-G---GQYHVLLIIADGQVT-RSVDTVRGCLSPQEQKTVDAIVKASEL 250 (392)
Q Consensus 178 Yr~~l~~v-~LsGPT~FaPVI~~ai~iv-e~s-~---~~Y~VLLIITDG~It-d~vd~~~~~~~~d~~~TidaIv~AS~l 250 (392)
-.+.+..+ .+.|.|+....|+.|.+.+ .+. + ..-.|+|+||||..+ |. ....+++.+|-+.
T Consensus 193 l~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~------------~~~~~~a~~~r~~ 260 (1095)
T 3k6s_A 193 PLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------------LDYKDVIPMADAA 260 (1095)
T ss_dssp GGGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS------------SCHHHHHHHHHHH
T ss_pred HHHHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc------------hhHHHHHHHHHHC
Confidence 11233344 4678999999999997753 221 1 234789999999984 32 1223444444455
Q ss_pred CcEEEEEecccC-----CcccccccCC
Q 016250 251 PLSIVLVGVGDG-----PWDMMKEFDD 272 (392)
Q Consensus 251 PLSII~VGVGdg-----~F~~M~~LDd 272 (392)
-+-|..||||+. +.+.|+++-+
T Consensus 261 GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 261 GIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp CEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred CCEEEEEecccccccccCHHHHHHHHc
Confidence 788999999986 6777777653
No 25
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.05 E-value=0.0025 Score=66.21 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=95.1
Q ss_pred cCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc---ccCCCCccceeecCCCCCCc----
Q 016250 96 AGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA---VFDEDNLIPCYGFGDGGRFC---- 168 (392)
Q Consensus 96 ~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~---~yDdD~~ipvfGFGa~~~~c---- 168 (392)
+|-. -.++++||.|.||.... .+ .++..+.|.+.|..+++ .......|-+..||.....|
T Consensus 4 ~~~k-e~iv~~iDvS~SM~~~d-----------~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~ 70 (565)
T 1jey_B 4 SGNK-AAVVLCMDVGFTMSNSI-----------PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSG 70 (565)
T ss_dssp --CC-EEEEEEEECCGGGGCCB-----------TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCT
T ss_pred CCCc-eEEEEEEECChHhcccC-----------CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCcccc
Confidence 4443 27999999999996320 12 36888999999888888 35677799999999873211
Q ss_pred -CCH-------------HHHHHHHHhhcCceeec-CCCChHHHHHHHHHHHHhc--CCcc--EEEEEEeCCccccccccc
Q 016250 169 -YGF-------------EEVLSRYREIVPNLKLA-GPTSFAPVIEMAMSIVEQS--GGQY--HVLLIIADGQVTRSVDTV 229 (392)
Q Consensus 169 -~G~-------------egVL~aYr~~l~~v~Ls-GPT~FaPVI~~ai~ive~s--~~~Y--~VLLIITDG~Itd~vd~~ 229 (392)
.|+ .++++.... .+..+ +.|.+...|..|+++.++. ..++ -++++||||+-.-.
T Consensus 71 d~~y~~i~vl~~l~~~~~~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~---- 143 (565)
T 1jey_B 71 GDQYQNITVHRHLMLPDFDLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFS---- 143 (565)
T ss_dssp TTCSTTEEEEEEEECCCHHHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCC----
T ss_pred ccCCCceEEeecCCCCCHHHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCC----
Confidence 011 234443333 23333 6899999999999998765 3334 57899999975421
Q ss_pred cCCCChhHHHHHHHHHHhcCCCcEEE-EEecccC
Q 016250 230 RGCLSPQEQKTVDAIVKASELPLSIV-LVGVGDG 262 (392)
Q Consensus 230 ~~~~~~d~~~TidaIv~AS~lPLSII-~VGVGdg 262 (392)
.....+++..+.+.-|.|. +||+|..
T Consensus 144 -------~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 144 -------KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp -------CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred -------HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1234556777778899999 8999864
No 26
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.98 E-value=0.013 Score=60.40 Aligned_cols=134 Identities=12% Similarity=0.172 Sum_probs=81.0
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC-----CCcCCHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG-----RFCYGFEEVL 175 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~-----~~c~G~egVL 175 (392)
.+++|+||.|+||.... .+ ++| . +.++...++ .+..- .+..+-++.|++.. ..-.++..++
T Consensus 369 ~~v~lvvD~SgSM~~~~---~~-~~l-------~-~~~~Aa~l~-~~~~~-~~d~vglv~Fs~~~~~~~~t~~~~l~~~l 434 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV---LG-SIL-------N-ASVVAAAMC-MLVAR-TEKDSHMVAFSDEMLPCPITVNMLLHEVV 434 (538)
T ss_dssp CCEEEEEECSGGGGSBS---TT-SSC-------B-HHHHHHHHH-HHHHH-HCSSEEEEEESSSEECCSCCTTSCHHHHH
T ss_pred ceEEEEEECccccCCCC---CC-CcH-------H-HHHHHHHHH-HHHhc-cCCceEEEEECCCceEcCCCCcccHHHHH
Confidence 67899999999997421 11 112 1 222211122 11111 23368889998761 1123466666
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEE
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIV 255 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII 255 (392)
+.-. .+ ..|.|++...|+.+.+. ....-++|+||||..+.. .-+ ..+.++.+.+..+.++.++
T Consensus 435 ~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g------~~~--~~~~l~~~~~~~~~~v~l~ 497 (538)
T 1yvr_A 435 EKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVE------DVH--PATALKQYREKMGIPAKLI 497 (538)
T ss_dssp HHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSS------SCC--HHHHHHHHHHHHTCCCEEE
T ss_pred HHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCC------CCC--HHHHHHHHHHHhCCCcEEE
Confidence 5432 22 57889999999888764 223467899999987641 111 2355566676667789999
Q ss_pred EEecccCCcc
Q 016250 256 LVGVGDGPWD 265 (392)
Q Consensus 256 ~VGVGdg~F~ 265 (392)
+||||.....
T Consensus 498 ~igig~~~~~ 507 (538)
T 1yvr_A 498 VCAMTSNGFS 507 (538)
T ss_dssp EEECSSSSEE
T ss_pred EEEecCCCCc
Confidence 9999986543
No 27
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.92 E-value=0.0058 Score=64.24 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=97.1
Q ss_pred ceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceeecCCCCCCc----------
Q 016250 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDGGRFC---------- 168 (392)
Q Consensus 102 nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~---yDdD~~ipvfGFGa~~~~c---------- 168 (392)
.++++||.|.||.... .+...+..+.|++.|..+++. -.....|-+..||.....+
T Consensus 37 ~ivf~IDvS~SM~~~d-----------~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~ 105 (609)
T 1jey_A 37 SLIFLVDASKAMFESQ-----------SEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVL 105 (609)
T ss_dssp EEEEEEECSGGGGCCC-----------SSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEE
T ss_pred EEEEEEECCHHHcCCC-----------CCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEE
Confidence 5999999999996321 122468899999999888875 3445689999999873111
Q ss_pred -----CCHHHHHHHHHhhcC---------ceeecCCCChHHHHHHHHHHHHhcCCcc--EEEEEEeCCccccccccccCC
Q 016250 169 -----YGFEEVLSRYREIVP---------NLKLAGPTSFAPVIEMAMSIVEQSGGQY--HVLLIIADGQVTRSVDTVRGC 232 (392)
Q Consensus 169 -----~G~egVL~aYr~~l~---------~v~LsGPT~FaPVI~~ai~ive~s~~~Y--~VLLIITDG~Itd~vd~~~~~ 232 (392)
-+.+ .++..+..+. .+.....|.+..+|-.|+++.+....++ -++++||||.-.- +.
T Consensus 106 ~~L~~~~~~-~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~------~~ 178 (609)
T 1jey_A 106 QELDNPGAK-RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPH------GN 178 (609)
T ss_dssp EEEECCCHH-HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTT------TT
T ss_pred ecCCCCCHH-HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCC------CC
Confidence 1222 3333333221 0112457999999999999988764332 5789999996431 11
Q ss_pred CChhHHHHHHHHHHhcCCCcEEEEEecccCC-cc
Q 016250 233 LSPQEQKTVDAIVKASELPLSIVLVGVGDGP-WD 265 (392)
Q Consensus 233 ~~~d~~~TidaIv~AS~lPLSII~VGVGdg~-F~ 265 (392)
-+........++..+.++-|.|.+||||..+ |+
T Consensus 179 ~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 179 DSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp CHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred chHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 1112345677778888999999999999753 54
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=96.56 E-value=0.016 Score=59.92 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=81.7
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC--CC---cCCHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG--RF---CYGFEEVL 175 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~--~~---c~G~egVL 175 (392)
.+++|+||.|+||.+.+. .. ....+..+.| ..++-++..- . ..+-++.|++.- .. -.++.+++
T Consensus 363 ~~~lv~vDvSgSM~~~~~-------~~--~~k~~~~e~A-a~la~~~~r~-~-d~v~lv~Fs~~~~~~~~~~~~~l~~~l 430 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGDV-------AG--VPGLTPNMAA-AAMSLIALRT-E-PDALTMGFAEQFRPLGITPRDTLESAM 430 (535)
T ss_dssp SEEEEEECCSGGGGSCCG-------GG--CTTCCHHHHH-HHHHHHHHHH-S-SEEEEEEEBSSEEECCCCTTCCHHHHH
T ss_pred ceEEEEEECCccccCCCC-------CC--CCcccHHHHH-HHHHHHHcCc-C-CceEEEEECCcceEcCCCcchhHHHHH
Confidence 678999999999964110 00 1113444444 3444333322 2 267889998761 11 24555555
Q ss_pred HHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEE
Q 016250 176 SRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIV 255 (392)
Q Consensus 176 ~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII 255 (392)
+ .+... ..|.|+++..|+.+.+. ....-++||||||+... |..++ .+.++...+..+.++-++
T Consensus 431 ~---~l~~~--~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~~~~~~klv 493 (535)
T 2nvo_A 431 Q---KAQSV--SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQKMGRAPKLI 493 (535)
T ss_dssp H---HTCCS--SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHHHSCCCEEE
T ss_pred H---HHhhC--CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHhhCCCCeEE
Confidence 4 33222 36889999988776432 33467889999998754 12223 345666666667799999
Q ss_pred EEecccCC
Q 016250 256 LVGVGDGP 263 (392)
Q Consensus 256 ~VGVGdg~ 263 (392)
+||||...
T Consensus 494 ~i~l~~~~ 501 (535)
T 2nvo_A 494 VVGLTATE 501 (535)
T ss_dssp EEETTCSC
T ss_pred EEeccCCC
Confidence 99999864
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=89.97 E-value=1.1 Score=49.55 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=30.7
Q ss_pred eeecCCCChHHHHHHHHHHHHh-c-CCccEEEEEEeCCcccc
Q 016250 185 LKLAGPTSFAPVIEMAMSIVEQ-S-GGQYHVLLIIADGQVTR 224 (392)
Q Consensus 185 v~LsGPT~FaPVI~~ai~ive~-s-~~~Y~VLLIITDG~Itd 224 (392)
+...|-|+...-|+.|+++.++ . ...=-++|+||||.-+.
T Consensus 351 l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 351 MYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp GGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCCSE
T ss_pred cccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCCCc
Confidence 3447889999999999999874 2 13336789999998775
No 30
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=74.05 E-value=4.9 Score=37.15 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=59.2
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCCC-----CCcCCHHHHH
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDGG-----RFCYGFEEVL 175 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~~-----~~c~G~egVL 175 (392)
+.|.+.+|+|+||+. ++ +..+..+..|..-|+.+..+-.|-+-+|-++. +.-..++.+.
T Consensus 4 vDl~fl~D~S~SM~~------------di----~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~ 67 (212)
T 2iue_A 4 VDLYFLMGLSGSAQG------------HL----SNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQ 67 (212)
T ss_dssp EEEEEEEECCGGGTT------------TH----HHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHH
T ss_pred eEEEEEEeCCCcchh------------HH----HHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHH
Confidence 678999999999974 22 23466777777777777666554433344441 1112344444
Q ss_pred HHHHhhcCceeecC----CCC-hHHHHHHHHH--HHHhcCCccEEEEEEeCCcccc
Q 016250 176 SRYREIVPNLKLAG----PTS-FAPVIEMAMS--IVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 176 ~aYr~~l~~v~LsG----PT~-FaPVI~~ai~--ive~s~~~Y~VLLIITDG~Itd 224 (392)
+ .+.+...+| |-. |.-+++.++. .....+ .-++||++||+..+.
T Consensus 68 ~----~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 68 R----ELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp H----HHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred H----HHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence 3 333455555 433 3334443321 122334 569999999998775
No 31
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=67.78 E-value=4.5 Score=43.50 Aligned_cols=50 Identities=14% Similarity=0.321 Sum_probs=29.9
Q ss_pred HHHHHhhcCceeecCC----C-ChHHHHHHHH--HHHHhcCCccEEEEEEeCCcccc
Q 016250 175 LSRYREIVPNLKLAGP----T-SFAPVIEMAM--SIVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 175 L~aYr~~l~~v~LsGP----T-~FaPVI~~ai--~ive~s~~~Y~VLLIITDG~Itd 224 (392)
++.+++.+.++..+|- - -|.-||+.|+ +.........++||++||...+-
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~ 256 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCcccc
Confidence 4555666666666653 2 3444444442 22333445679999999987663
No 32
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=63.01 E-value=4.7 Score=38.23 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=28.0
Q ss_pred ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCC
Q 016250 210 QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGP 263 (392)
Q Consensus 210 ~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~ 263 (392)
.--++++||||.-+- |. +| +++...|.+.-|-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 346789999998542 11 22 23344566778999999998753
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=51.29 E-value=3.4 Score=39.20 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=55.4
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceeecCCCC--------CCcC
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDGG--------RFCY 169 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yD---dD~~ipvfGFGa~~--------~~c~ 169 (392)
..+++.||-|+||. ++ .+.+-..+-.++..++ ....|-++.|+.+. ++..
T Consensus 135 ~~vvfLVDtSgSM~--~k-----------------l~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~ 195 (242)
T 3rag_A 135 LHLVVCLDTSASMR--DK-----------------IPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSS 195 (242)
T ss_dssp EEEEEEEECSGGGT--TT-----------------HHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEES
T ss_pred CCEEEEEECcccHH--HH-----------------HHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCC
Confidence 67899999999994 11 2444444555555544 46789999999862 2222
Q ss_pred CHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhc
Q 016250 170 GFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS 207 (392)
Q Consensus 170 G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s 207 (392)
-. . + .+.++.+...|-|...+.|+.|.++.++.
T Consensus 196 ~~-~-~---~~~l~~L~agG~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 196 EV-N-V---AALEAELVARGGTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp SC-C-H---HHHHHHCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred hH-H-H---HHHHhhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 22 1 1 12334456789999999999999987643
No 34
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=48.10 E-value=25 Score=37.74 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=15.0
Q ss_pred CCceeceEEEEeccCCCCc
Q 016250 97 GLESSNLIVGIDFTKSNEW 115 (392)
Q Consensus 97 Gles~nliVaIDFT~SN~~ 115 (392)
+.. +.|.+.||+|.||..
T Consensus 102 ~yp-vDly~LmD~S~SM~d 119 (687)
T 3k6s_B 102 GYP-IDLYYLMDLSYSMLD 119 (687)
T ss_dssp CCC-CEEEEEEECSSTTHH
T ss_pred CCc-eeEEEEEcCCcchHH
Confidence 444 789999999999974
No 35
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=40.48 E-value=24 Score=36.43 Aligned_cols=18 Identities=11% Similarity=0.040 Sum_probs=14.9
Q ss_pred CCceeceEEEEeccCCCCc
Q 016250 97 GLESSNLIVGIDFTKSNEW 115 (392)
Q Consensus 97 Gles~nliVaIDFT~SN~~ 115 (392)
+.. +.|.+.+|+|.||..
T Consensus 109 ~yp-vDLy~LmDlS~SM~d 126 (472)
T 3t3p_B 109 DYP-VDIYYLMDLSYSMKD 126 (472)
T ss_dssp SCC-EEEEEEEECSGGGHH
T ss_pred CCC-ceEEEEEccCcchHH
Confidence 444 789999999999974
No 36
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=32.84 E-value=65 Score=33.10 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=81.9
Q ss_pred cccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCCCCCCCCCccccCCC-----CCHHHHHHHHHhhcccccCCCCcc
Q 016250 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDG-----LNPYEQAISIIGKTLAVFDEDNLI 156 (392)
Q Consensus 82 ~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~-----~N~YqqAI~~Ig~vl~~yDdD~~i 156 (392)
+-.-||-|..|.+++|.+ -.+.+|+|+.+|--+..+. ....|.+-+.. .=.-+++|+-+.+++..|+
T Consensus 227 ~~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~--g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~yp----- 298 (452)
T 3otr_A 227 AEEALNLLVEAIKAAGYE-GKIKIAFDAAASEFYKQDE--KKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP----- 298 (452)
T ss_dssp HHHHHHHHHHHHHHHTCT-TTSEEEEECCGGGGEETTT--TEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSC-----
T ss_pred HHHHHHHHHHHHHHcCCC-ceEEEccccchHhheeccC--CeEEeeccCCCCcccccccHHHHHHHHHHHHhhhC-----
Confidence 344588899999999999 5999999999986542110 00011111100 0024888888888888774
Q ss_pred ceeecCCCCCC-cCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEE-Ee-CCccccccccccCCC
Q 016250 157 PCYGFGDGGRF-CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLI-IA-DGQVTRSVDTVRGCL 233 (392)
Q Consensus 157 pvfGFGa~~~~-c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLI-IT-DG~Itd~vd~~~~~~ 233 (392)
+.-+ .+|. -..++++-...+++-..+++.|-..|.--.+.+.+.++... ..+|+| +. -|.||
T Consensus 299 -Iv~I--EDPl~~dD~eg~a~Lt~~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a--~n~IlIKvnQIGgIT---------- 363 (452)
T 3otr_A 299 -IISV--EDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKA--CNCLLLKVNQIGSVT---------- 363 (452)
T ss_dssp -EEEE--ECCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTC--CSEEEECHHHHCCHH----------
T ss_pred -ceEE--ecCCChhhHHHHHHHHHhhCCCeEEEeCccccCCHHHHHHHHhcCC--CCEEEeeccccccHH----------
Confidence 2322 1222 24577776655555446777776554222333333334322 222222 22 25554
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEE
Q 016250 234 SPQEQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 234 ~~d~~~TidaIv~AS~lPLSII~ 256 (392)
++++++.-|-..-+-+++
T Consensus 364 -----Ealka~~lA~~~G~~vmv 381 (452)
T 3otr_A 364 -----EAIEACLLAQKSGWGVQV 381 (452)
T ss_dssp -----HHHHHHHHHHHTTCEEEE
T ss_pred -----HHHHHHHHHHHcCCeEEE
Confidence 677777777666655544
No 37
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=29.18 E-value=98 Score=31.65 Aligned_cols=145 Identities=16% Similarity=0.168 Sum_probs=80.1
Q ss_pred cccchHHHHHHHHHcCCceeceEEEEeccCCCCcCCC-CCCCCCCccccCC-------CCCHHHHHHHHHhhcccccCCC
Q 016250 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGK-RSFNRRSLHYIGD-------GLNPYEQAISIIGKTLAVFDED 153 (392)
Q Consensus 82 ~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~-~s~~~~SLH~i~~-------~~N~YqqAI~~Ig~vl~~yDdD 153 (392)
+-.-||-|..|.+++|.+ -.+.+|+|+.+|--+..+ ..| .|.+-+. ..=.-++++.-+.++++.|+
T Consensus 223 ~~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~g~Y---~l~f~~~~~~~~~~~~~t~~elid~y~~lle~yp-- 296 (441)
T 3qtp_A 223 AREALDLLVEAIAKAGYT-GKIEIAMDCAASEFYNEETKKY---DLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYP-- 296 (441)
T ss_dssp HHHHHHHHHHHHHHHTCT-TTCEEEEECCGGGGEETTTTEE---ETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHHHHcCCC-ceEEEccchhHHHhhhccCCeE---EeecCCcccccccccccCHHHHHHHHHHHhhhcc--
Confidence 344588899999999999 599999999998765321 001 1111110 00014888888888888775
Q ss_pred CccceeecCCCCCC-cCCHHHHHHHHHhhcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEE-Ee-CCcccccccccc
Q 016250 154 NLIPCYGFGDGGRF-CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLI-IA-DGQVTRSVDTVR 230 (392)
Q Consensus 154 ~~ipvfGFGa~~~~-c~G~egVL~aYr~~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLI-IT-DG~Itd~vd~~~ 230 (392)
+.-+ .+|. -..++++-+..+++- .+++.|-..|.--.+.+.+.++... ..+|+| +. -|.||
T Consensus 297 ----I~~I--EDPl~~dD~eg~a~Lt~~lg-~i~IvGDEl~vTn~~~i~~~Ie~~a--~n~IlIKvnqiGGIT------- 360 (441)
T 3qtp_A 297 ----IASI--EDPFAEDDWAAWNKFTVEHG-NFQIVGDDLLVTNPARVQMAMDKNA--CNSVLIKVNQIGTLT------- 360 (441)
T ss_dssp ----EEEE--ESCSCTTCHHHHHHHHHHTT-TSEEEESTTTTTCHHHHHHHHHHTC--CSEEEECGGGTCCHH-------
T ss_pred ----eeee--cCCCChHHHHHHHHHHHhcC-CceEEeccccccCHHHHHHHHHcCC--CCEEEecccccccHH-------
Confidence 2222 1222 245677666555443 5777775554221233333333322 222222 22 24554
Q ss_pred CCCChhHHHHHHHHHHhcCCCcEEEE
Q 016250 231 GCLSPQEQKTVDAIVKASELPLSIVL 256 (392)
Q Consensus 231 ~~~~~d~~~TidaIv~AS~lPLSII~ 256 (392)
++++++.-|-..-+-+++
T Consensus 361 --------Ealkaa~lA~~~G~~vmv 378 (441)
T 3qtp_A 361 --------ETFKTIKMAQEKGWGVMA 378 (441)
T ss_dssp --------HHHHHHHHHHHTTCEEEE
T ss_pred --------HHHHHHHHHHHcCCeEEE
Confidence 677777777666665554
No 38
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=28.69 E-value=12 Score=35.70 Aligned_cols=36 Identities=33% Similarity=0.585 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 016250 28 TGYLQSPYGQESQNYPPQTYPPPQTYSTQQYYPSSEEH 65 (392)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (392)
++++.+||+++ +|||++|++++.++++++|+....+
T Consensus 398 ~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (448)
T 2z73_A 398 QGYPPQGYPPQ--GYPPQGYPPQGYPPPPQGAPPQGAP 433 (448)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCCCC--CCCCcCCCCCCCCCCCCCCCCCCCC
No 39
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=26.98 E-value=3e+02 Score=23.55 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccc
Q 016250 192 SFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMK 268 (392)
Q Consensus 192 ~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~ 268 (392)
.|..+++.+.+.+++.+ |.++++.+++.... +.+.++.+. +...=.||+++....+...++
T Consensus 16 ~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~------------~~~~~~~l~--~~~vdgiI~~~~~~~~~~~l~ 76 (255)
T 1byk_A 16 SENLAVQTMLPAFYEQG--YDPIMMESQFSPQL------------VAEHLGVLK--RRNIDGVVLFGFTGITEEMLA 76 (255)
T ss_dssp HHHHHHHHHHHHHHHHT--CEEEEEECTTCHHH------------HHHHHHHHH--TTTCCEEEEECCTTCCTTTSG
T ss_pred cHHHHHHHHHHHHHHcC--CEEEEEeCCCcHHH------------HHHHHHHHH--hcCCCEEEEecCccccHHHHH
Confidence 46677777777777765 77766655543321 334444443 355667888876433333343
No 40
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.30 E-value=3.6e+02 Score=23.51 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccccc
Q 016250 192 SFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEF 270 (392)
Q Consensus 192 ~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~L 270 (392)
.|..+++.+.+.+++.+ |.++++.+++.... +.+.++.+.. ...=.||+++... .-..+++|
T Consensus 22 ~~~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~------------~~~~~~~l~~--~~vdgiIi~~~~~-~~~~~~~~ 83 (291)
T 3egc_A 22 FFAEVASGVESEARHKG--YSVLLANTAEDIVR------------EREAVGQFFE--RRVDGLILAPSEG-EHDYLRTE 83 (291)
T ss_dssp HHHHHHHHHHHHHHHTT--CEEEEEECTTCHHH------------HHHHHHHHHH--TTCSEEEECCCSS-CCHHHHHS
T ss_pred HHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHH------------HHHHHHHHHH--CCCCEEEEeCCCC-ChHHHHHh
Confidence 35667777767777754 78877776654432 3445555543 4566777777654 33344444
No 41
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=22.81 E-value=1.1e+02 Score=31.12 Aligned_cols=103 Identities=21% Similarity=0.260 Sum_probs=57.6
Q ss_pred CccceeecCCC-CC--------CcCCHHHHHHHHHh------hcCceeecCCCChHHHHHHHHHHHHhcCCccEEEEE--
Q 016250 154 NLIPCYGFGDG-GR--------FCYGFEEVLSRYRE------IVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLI-- 216 (392)
Q Consensus 154 ~~ipvfGFGa~-~~--------~c~G~egVL~aYr~------~l~~v~LsGPT~FaPVI~~ai~ive~s~~~Y~VLLI-- 216 (392)
-.+||||||.. .+ .-++++|.++.-.+ ..+.|.|..|-.. .-++.+.+.+++.+.. +..|
T Consensus 52 is~~~W~f~~~g~~~~~~~~~g~~r~~~e~~~d~~~v~~l~~~~~~v~lH~p~d~-~d~~~lk~~l~e~GL~--l~~i~~ 128 (438)
T 3m0m_A 52 VAVPSWGVGTGGTRFARFPGTGEPRGIFDKLDDCAVIQQLTRATPNVSLHIPWDK-ADPKELKARGDALGLG--FDAMNS 128 (438)
T ss_dssp CBEEGGGSSBCBCSSCBCCCSSCCCSHHHHHHHHHHHHHHHSCCCEEEEETTTTC-CCHHHHHHHHHHHTCE--EEEEEC
T ss_pred eeeceecccCCCCccccCCCCCCCCCHHHHHHHHHHHhcccCCCcceeecCCccH-HHHHHHHHHHHHcCCc--eEEeec
Confidence 57999999965 11 12457776655443 3567888888654 4556666667777643 2212
Q ss_pred --EeC--CccccccccccCCC-ChhH-------HHHHHHHHHhcCCCcEEEEEecccC
Q 016250 217 --IAD--GQVTRSVDTVRGCL-SPQE-------QKTVDAIVKASELPLSIVLVGVGDG 262 (392)
Q Consensus 217 --ITD--G~Itd~vd~~~~~~-~~d~-------~~TidaIv~AS~lPLSII~VGVGdg 262 (392)
+++ |+... -..|.| |+|. +..+++|..|..+..-.+.+-.|++
T Consensus 129 ~~f~hp~~~~~~---Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~lv~w~GdG 183 (438)
T 3m0m_A 129 NTFSDAPGQAHS---YKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDG 183 (438)
T ss_dssp CCSSCCTTCSSC---CTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCCE
T ss_pred ccccCchhcccc---cccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 222 11111 011223 2222 3466777778877777777666643
No 42
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=20.49 E-value=1.1e+02 Score=31.65 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHHhcCCccEEEEEEeCCcccc
Q 016250 192 SFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 192 ~FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd 224 (392)
.--|++..+++.++++++..|++=.++||+|+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~H~~gl~sdggvhs 124 (511)
T 1o98_A 92 DRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHS 124 (511)
T ss_dssp GGCHHHHHHHHHHHHHTCCEEEEEECSSCCSSC
T ss_pred ccCHHHHHHHHHHHhcCCeEEEEEeccCCCCcc
Confidence 336788899999988888899988999999985
No 43
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.46 E-value=2.8e+02 Score=24.25 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecccCCccccccc
Q 016250 193 FAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEF 270 (392)
Q Consensus 193 FaPVI~~ai~ive~s~~~Y~VLLIITDG~Itd~vd~~~~~~~~d~~~TidaIv~AS~lPLSII~VGVGdg~F~~M~~L 270 (392)
|..+++.+.+.+++.+ |.++++-+++.... +.+.++.++. ...=.||+++....+ ..+++|
T Consensus 22 ~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~------------~~~~~~~l~~--~~vdgiI~~~~~~~~-~~~~~l 82 (288)
T 2qu7_A 22 FTEVLTEISHECQKHH--LHVAVASSEENEDK------------QQDLIETFVS--QNVSAIILVPVKSKF-QMKREW 82 (288)
T ss_dssp HHHHHHHHHHHHGGGT--CEEEEEECTTCHHH------------HHHHHHHHHH--TTEEEEEECCSSSCC-CCCGGG
T ss_pred HHHHHHHHHHHHHHCC--CEEEEEeCCCCHHH------------HHHHHHHHHH--cCccEEEEecCCCCh-HHHHHh
Confidence 5566666666666654 77665544433221 3344454442 344456665554322 345555
No 44
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=20.23 E-value=69 Score=33.37 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred eceEEEEeccCCCCcCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceeecCCC--C-----------CC
Q 016250 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDG--G-----------RF 167 (392)
Q Consensus 101 ~nliVaIDFT~SN~~tg~~s~~~~SLH~i~~~~N~YqqAI~~Ig~vl~~yDdD~~ipvfGFGa~--~-----------~~ 167 (392)
+.|.+.+|+|.||.+ ++. ...+....|...|...-++-.|-+-.|-++ - .+
T Consensus 133 VDLyyLmDlS~SM~d------------dl~----~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~P 196 (503)
T 3v4v_B 133 VDLYYLMDLSYSMKD------------DLE----RVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHP 196 (503)
T ss_dssp EEEEEEEECSGGGHH------------HHH----HHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCC
T ss_pred eeEEEEEecCcchhh------------HHH----HHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCC
Confidence 789999999999963 121 123333444444555545545444444344 0 12
Q ss_pred cC----------CHH------HHHHHHHhhcCceeecCC----C-ChHHHHHHHH--HHHHhcCCccEEEEEEeCCcccc
Q 016250 168 CY----------GFE------EVLSRYREIVPNLKLAGP----T-SFAPVIEMAM--SIVEQSGGQYHVLLIIADGQVTR 224 (392)
Q Consensus 168 c~----------G~e------gVL~aYr~~l~~v~LsGP----T-~FaPVI~~ai--~ive~s~~~Y~VLLIITDG~Itd 224 (392)
|. ++. .=.+.+.+.+.+...+|- - -|.-+|+.|. +...... .-++||++||...+-
T Consensus 197 C~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~-a~rllV~~TDA~fH~ 275 (503)
T 3v4v_B 197 CPTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN-VSRLLVFTSDDTFHT 275 (503)
T ss_dssp SSCSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCC
T ss_pred CcCCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCc-ceEEEEEECCCCcCc
Confidence 21 111 113456666677766653 2 2444555543 2233333 348899999987653
Done!