Query 016253
Match_columns 392
No_of_seqs 317 out of 2353
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082 G-protein alpha subuni 100.0 5.1E-93 1.1E-97 685.4 31.6 353 9-392 1-354 (354)
2 KOG0085 G protein subunit Galp 100.0 1.5E-90 3.2E-95 620.7 17.5 356 6-392 3-359 (359)
3 KOG0099 G protein subunit Galp 100.0 2E-80 4.3E-85 563.6 24.3 369 9-392 1-379 (379)
4 smart00275 G_alpha G protein a 100.0 2.5E-79 5.3E-84 601.4 32.6 339 28-390 2-342 (342)
5 cd00066 G-alpha G protein alph 100.0 7.7E-76 1.7E-80 572.3 30.1 316 48-388 1-317 (317)
6 PF00503 G-alpha: G-protein al 100.0 6.2E-75 1.3E-79 582.0 28.5 344 22-381 33-389 (389)
7 KOG0084 GTPase Rab1/YPT1, smal 99.9 2.5E-23 5.4E-28 183.6 12.2 149 180-385 26-175 (205)
8 KOG0092 GTPase Rab5/YPT51 and 99.9 1.1E-21 2.4E-26 172.6 12.5 149 180-385 22-170 (200)
9 KOG0078 GTP-binding protein SE 99.9 5.8E-21 1.3E-25 170.9 13.0 148 180-384 29-176 (207)
10 KOG0073 GTP-binding ADP-ribosy 99.8 4.8E-20 1E-24 158.0 15.0 136 200-384 45-180 (185)
11 KOG0087 GTPase Rab11/YPT3, sma 99.8 2.8E-20 6E-25 166.0 13.5 154 178-388 29-182 (222)
12 KOG0070 GTP-binding ADP-ribosy 99.8 1.1E-20 2.4E-25 165.7 10.8 125 200-341 46-178 (181)
13 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 2.7E-20 5.8E-25 164.0 11.7 136 200-384 52-187 (221)
14 KOG0071 GTP-binding ADP-ribosy 99.8 2.2E-20 4.8E-25 156.0 9.4 123 200-339 46-176 (180)
15 cd04175 Rap1 Rap1 subgroup. T 99.8 3.4E-19 7.3E-24 156.6 16.5 118 217-381 45-162 (164)
16 cd04122 Rab14 Rab14 subfamily. 99.8 5.5E-19 1.2E-23 155.8 16.7 119 217-383 47-165 (166)
17 KOG0098 GTPase Rab2, small G p 99.8 1.6E-19 3.5E-24 157.9 12.0 145 180-385 23-171 (216)
18 KOG0079 GTP-binding protein H- 99.8 1.8E-19 3.9E-24 151.8 10.8 137 200-387 38-174 (198)
19 PLN00223 ADP-ribosylation fact 99.8 1.8E-19 4E-24 162.1 11.7 135 200-384 46-180 (181)
20 KOG0080 GTPase Rab18, small G 99.8 1.5E-19 3.2E-24 154.3 9.8 148 180-383 28-175 (209)
21 KOG0093 GTPase Rab3, small G p 99.8 5.7E-19 1.2E-23 148.7 12.1 151 181-388 39-189 (193)
22 KOG0086 GTPase Rab4, small G p 99.8 3.2E-19 7E-24 151.0 10.0 135 200-384 39-173 (214)
23 cd04120 Rab12 Rab12 subfamily. 99.8 1E-18 2.2E-23 160.1 14.0 121 217-384 45-165 (202)
24 cd04127 Rab27A Rab27a subfamil 99.8 2.8E-18 6.1E-23 153.1 16.6 119 219-384 61-179 (180)
25 KOG0095 GTPase Rab30, small G 99.8 6.6E-19 1.4E-23 148.6 10.8 149 180-385 24-172 (213)
26 cd01865 Rab3 Rab3 subfamily. 99.8 4.8E-18 1E-22 149.8 16.7 118 217-382 46-163 (165)
27 cd04110 Rab35 Rab35 subfamily. 99.8 5.5E-18 1.2E-22 154.6 17.3 122 217-387 51-172 (199)
28 PF00025 Arf: ADP-ribosylation 99.8 2E-18 4.3E-23 154.6 13.2 133 200-381 43-175 (175)
29 cd04154 Arl2 Arl2 subfamily. 99.8 1.9E-18 4.1E-23 153.7 12.8 116 220-379 57-172 (173)
30 cd04134 Rho3 Rho3 subfamily. 99.8 4.4E-18 9.6E-23 153.9 15.3 133 217-385 44-177 (189)
31 cd04119 RJL RJL (RabJ-Like) su 99.8 9.5E-18 2.1E-22 146.9 16.2 119 217-382 45-167 (168)
32 cd04176 Rap2 Rap2 subgroup. T 99.8 7.2E-18 1.6E-22 147.9 15.3 117 217-380 45-161 (163)
33 cd04121 Rab40 Rab40 subfamily. 99.8 4E-18 8.7E-23 154.5 13.8 119 217-384 51-169 (189)
34 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.4E-17 3.1E-22 146.5 16.6 119 217-383 47-165 (166)
35 cd01867 Rab8_Rab10_Rab13_like 99.8 2E-17 4.4E-22 146.1 16.9 119 217-383 48-166 (167)
36 cd04125 RabA_like RabA-like su 99.8 2.3E-17 5.1E-22 148.7 17.5 120 217-384 45-164 (188)
37 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.4E-18 9.5E-23 149.7 12.4 121 217-379 46-166 (167)
38 smart00173 RAS Ras subfamily o 99.8 2.1E-17 4.6E-22 144.9 16.7 119 217-382 44-162 (164)
39 cd04116 Rab9 Rab9 subfamily. 99.8 1.8E-17 4E-22 146.4 16.4 117 217-380 50-169 (170)
40 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.7E-17 3.6E-22 147.2 16.1 118 217-381 47-168 (170)
41 cd04149 Arf6 Arf6 subfamily. 99.8 2.4E-18 5.1E-23 152.8 10.4 129 201-379 39-167 (168)
42 smart00177 ARF ARF-like small 99.8 4.4E-18 9.6E-23 152.0 12.1 131 201-381 43-173 (175)
43 cd04112 Rab26 Rab26 subfamily. 99.8 1.8E-17 3.9E-22 150.1 16.2 122 217-386 46-167 (191)
44 KOG0394 Ras-related GTPase [Ge 99.8 5.7E-18 1.2E-22 148.0 12.1 128 217-385 54-181 (210)
45 PTZ00099 rab6; Provisional 99.8 1.4E-17 3E-22 149.3 14.6 119 217-383 25-143 (176)
46 KOG0074 GTP-binding ADP-ribosy 99.8 1.2E-18 2.5E-23 145.9 6.8 122 201-338 47-176 (185)
47 cd04150 Arf1_5_like Arf1-Arf5- 99.7 7.1E-18 1.5E-22 148.3 10.7 130 200-379 29-158 (159)
48 PTZ00133 ADP-ribosylation fact 99.7 1.3E-17 2.8E-22 150.1 12.0 134 201-384 47-180 (182)
49 smart00176 RAN Ran (Ras-relate 99.7 1E-17 2.2E-22 153.3 10.6 117 217-384 40-156 (200)
50 cd01875 RhoG RhoG subfamily. 99.7 3.3E-17 7.2E-22 148.5 13.9 133 217-385 47-180 (191)
51 cd01866 Rab2 Rab2 subfamily. 99.7 1.2E-16 2.7E-21 141.3 16.9 119 217-383 49-167 (168)
52 cd04158 ARD1 ARD1 subfamily. 99.7 2.9E-17 6.2E-22 145.7 12.7 135 200-383 28-162 (169)
53 KOG0091 GTPase Rab39, small G 99.7 1.3E-17 2.7E-22 143.0 9.8 139 200-386 38-177 (213)
54 cd01892 Miro2 Miro2 subfamily. 99.7 5.7E-17 1.2E-21 144.0 14.4 118 217-383 50-167 (169)
55 cd04177 RSR1 RSR1 subgroup. R 99.7 1.3E-16 2.9E-21 141.0 16.6 121 217-383 45-165 (168)
56 cd01860 Rab5_related Rab5-rela 99.7 2E-16 4.3E-21 138.5 16.5 117 217-381 46-162 (163)
57 cd01864 Rab19 Rab19 subfamily. 99.7 1.9E-16 4.1E-21 139.4 16.0 117 217-380 48-164 (165)
58 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 7.2E-17 1.6E-21 150.8 13.9 153 184-387 38-193 (232)
59 cd04133 Rop_like Rop subfamily 99.7 1E-16 2.2E-21 143.8 14.0 146 184-382 26-173 (176)
60 cd01863 Rab18 Rab18 subfamily. 99.7 3.4E-16 7.5E-21 136.8 16.5 116 217-380 45-160 (161)
61 cd01861 Rab6 Rab6 subfamily. 99.7 2.4E-16 5.1E-21 137.7 15.4 116 217-380 45-160 (161)
62 cd01862 Rab7 Rab7 subfamily. 99.7 4.5E-16 9.7E-21 137.3 17.2 123 217-385 45-170 (172)
63 KOG0075 GTP-binding ADP-ribosy 99.7 3.5E-17 7.6E-22 137.9 9.5 132 200-381 50-181 (186)
64 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 9.5E-17 2.1E-21 144.7 12.9 149 184-383 30-181 (182)
65 cd04126 Rab20 Rab20 subfamily. 99.7 3.1E-16 6.7E-21 145.4 15.8 151 217-387 40-195 (220)
66 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.1E-16 4.6E-21 140.8 14.1 121 217-384 46-166 (172)
67 cd04139 RalA_RalB RalA/RalB su 99.7 6.7E-16 1.4E-20 134.8 16.8 119 217-382 44-162 (164)
68 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.6E-16 3.6E-21 140.3 13.0 128 200-378 29-162 (164)
69 smart00175 RAB Rab subfamily o 99.7 6.4E-16 1.4E-20 135.0 16.5 119 217-383 45-163 (164)
70 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 4.4E-16 9.5E-21 142.1 15.8 121 218-384 47-170 (201)
71 KOG0072 GTP-binding ADP-ribosy 99.7 6.9E-17 1.5E-21 135.7 9.4 134 200-383 47-180 (182)
72 cd04155 Arl3 Arl3 subfamily. 99.7 2E-16 4.3E-21 140.1 13.0 116 220-379 57-172 (173)
73 KOG0081 GTPase Rab27, small G 99.7 5.2E-17 1.1E-21 138.5 8.3 152 181-386 27-185 (219)
74 KOG0083 GTPase Rab26/Rab37, sm 99.7 2.3E-17 5E-22 136.9 6.0 137 200-386 28-164 (192)
75 cd04101 RabL4 RabL4 (Rab-like4 99.7 5.6E-16 1.2E-20 135.9 15.0 115 218-381 49-163 (164)
76 cd04123 Rab21 Rab21 subfamily. 99.7 1.4E-15 3E-20 132.3 16.1 116 218-381 46-161 (162)
77 cd01874 Cdc42 Cdc42 subfamily. 99.7 4.5E-16 9.8E-21 139.1 13.1 128 217-380 45-173 (175)
78 cd04131 Rnd Rnd subfamily. Th 99.7 4.9E-16 1.1E-20 139.4 13.2 149 184-382 26-176 (178)
79 cd04129 Rho2 Rho2 subfamily. 99.7 1.3E-15 2.7E-20 137.5 15.7 133 218-388 46-179 (187)
80 cd04136 Rap_like Rap-like subf 99.7 7E-16 1.5E-20 134.8 13.4 118 217-381 45-162 (163)
81 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.2E-15 2.7E-20 137.3 13.9 123 217-383 45-167 (182)
82 cd04161 Arl2l1_Arl13_like Arl2 99.7 7.8E-16 1.7E-20 136.4 12.3 133 200-379 28-166 (167)
83 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1E-15 2.2E-20 137.8 13.1 123 218-383 49-171 (183)
84 cd04117 Rab15 Rab15 subfamily. 99.7 1.5E-15 3.2E-20 133.7 13.6 116 217-380 45-160 (161)
85 PLN03071 GTP-binding nuclear p 99.7 3.3E-16 7.2E-21 145.2 9.6 117 217-384 58-174 (219)
86 cd00154 Rab Rab family. Rab G 99.7 2.9E-15 6.3E-20 129.0 14.9 113 218-378 46-158 (159)
87 cd04157 Arl6 Arl6 subfamily. 99.7 8.9E-16 1.9E-20 134.0 11.7 130 200-379 30-161 (162)
88 cd04148 RGK RGK subfamily. Th 99.6 5.1E-15 1.1E-19 137.4 16.4 117 217-382 46-163 (221)
89 KOG0076 GTP-binding ADP-ribosy 99.6 3.4E-16 7.5E-21 135.6 7.8 184 147-384 4-189 (197)
90 cd04137 RheB Rheb (Ras Homolog 99.6 4.1E-15 8.9E-20 132.7 15.1 120 220-386 48-167 (180)
91 cd04144 Ras2 Ras2 subfamily. 99.6 2.6E-15 5.6E-20 135.8 13.9 141 185-386 25-167 (190)
92 cd04151 Arl1 Arl1 subfamily. 99.6 9.6E-16 2.1E-20 134.0 10.7 129 201-379 29-157 (158)
93 cd04111 Rab39 Rab39 subfamily. 99.6 3.9E-15 8.5E-20 137.2 15.0 120 218-384 49-168 (211)
94 cd00877 Ran Ran (Ras-related n 99.6 3.1E-15 6.7E-20 132.4 13.7 116 217-383 45-160 (166)
95 PTZ00369 Ras-like protein; Pro 99.6 4.1E-15 8.9E-20 134.4 14.7 121 217-384 49-169 (189)
96 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 2.4E-15 5.2E-20 139.7 13.4 152 184-384 26-178 (222)
97 KOG0088 GTPase Rab21, small G 99.6 4.6E-16 1E-20 132.7 7.7 120 217-384 58-177 (218)
98 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1.5E-15 3.2E-20 135.4 11.3 129 201-379 45-173 (174)
99 cd01871 Rac1_like Rac1-like su 99.6 3.1E-15 6.6E-20 133.6 12.7 147 184-380 26-173 (174)
100 cd04109 Rab28 Rab28 subfamily. 99.6 5.4E-15 1.2E-19 136.5 14.5 119 219-384 48-168 (215)
101 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 6.3E-15 1.4E-19 131.1 14.2 121 217-382 45-165 (170)
102 cd04114 Rab30 Rab30 subfamily. 99.6 1.5E-14 3.3E-19 127.4 16.2 117 217-381 52-168 (169)
103 cd01873 RhoBTB RhoBTB subfamil 99.6 3.6E-15 7.8E-20 135.9 12.5 130 217-379 62-193 (195)
104 KOG0097 GTPase Rab14, small G 99.6 2.9E-15 6.3E-20 125.5 9.7 120 217-384 56-175 (215)
105 PF00071 Ras: Ras family; Int 99.6 8.2E-15 1.8E-19 128.1 13.2 118 217-382 44-161 (162)
106 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.4E-14 2.9E-19 126.0 14.2 135 185-381 27-161 (162)
107 cd00879 Sar1 Sar1 subfamily. 99.6 5.8E-15 1.3E-19 133.0 12.0 131 217-380 59-189 (190)
108 cd04124 RabL2 RabL2 subfamily. 99.6 1.4E-14 3E-19 127.3 13.8 116 217-384 45-160 (161)
109 cd00876 Ras Ras family. The R 99.6 2.2E-14 4.7E-19 124.5 14.5 116 219-381 45-160 (160)
110 cd04103 Centaurin_gamma Centau 99.6 1E-14 2.3E-19 128.2 12.6 115 217-380 43-157 (158)
111 PLN00023 GTP-binding protein; 99.6 9.4E-15 2E-19 141.2 12.3 75 219-303 81-166 (334)
112 cd04143 Rhes_like Rhes_like su 99.6 2.3E-14 5.1E-19 135.2 14.2 137 185-381 26-170 (247)
113 cd04132 Rho4_like Rho4-like su 99.6 3.4E-14 7.3E-19 127.7 14.5 125 218-386 46-171 (187)
114 PLN03110 Rab GTPase; Provision 99.6 2.7E-14 5.9E-19 132.1 14.0 120 217-384 57-176 (216)
115 cd04145 M_R_Ras_like M-Ras/R-R 99.6 3.5E-14 7.5E-19 124.2 13.6 118 217-381 46-163 (164)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.4E-14 3E-19 126.4 10.9 117 219-378 42-158 (160)
117 cd00157 Rho Rho (Ras homology) 99.6 1.1E-13 2.3E-18 121.9 16.3 126 218-379 45-170 (171)
118 PLN03108 Rab family protein; P 99.6 5.7E-14 1.2E-18 129.3 15.1 120 217-384 51-170 (210)
119 cd01868 Rab11_like Rab11-like. 99.6 4E-14 8.7E-19 124.2 13.4 117 217-381 48-164 (165)
120 cd04140 ARHI_like ARHI subfami 99.6 5.9E-14 1.3E-18 123.6 13.8 116 217-379 45-162 (165)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.5 5.9E-14 1.3E-18 122.3 12.7 130 200-379 28-157 (158)
122 smart00174 RHO Rho (Ras homolo 99.5 5.4E-14 1.2E-18 124.5 12.4 131 217-383 42-173 (174)
123 cd04159 Arl10_like Arl10-like 99.5 4.8E-14 1E-18 121.6 11.7 130 200-379 29-158 (159)
124 cd04142 RRP22 RRP22 subfamily. 99.5 7.5E-14 1.6E-18 127.5 13.4 122 217-384 45-176 (198)
125 COG1100 GTPase SAR1 and relate 99.5 1E-13 2.2E-18 127.5 14.4 133 220-384 53-187 (219)
126 smart00178 SAR Sar1p-like memb 99.5 2.8E-14 6.1E-19 128.5 10.1 125 218-380 58-183 (184)
127 cd04113 Rab4 Rab4 subfamily. 99.5 9E-14 1.9E-18 121.5 12.8 116 217-380 45-160 (161)
128 cd04106 Rab23_lke Rab23-like s 99.5 1.1E-13 2.3E-18 120.9 13.2 113 218-379 48-160 (162)
129 cd04118 Rab24 Rab24 subfamily. 99.5 1.6E-13 3.5E-18 124.0 14.7 124 217-385 46-169 (193)
130 PLN03118 Rab family protein; P 99.5 2.3E-13 4.9E-18 125.2 15.8 121 217-384 58-179 (211)
131 cd04135 Tc10 TC10 subfamily. 99.5 3.1E-13 6.7E-18 119.6 13.2 130 217-381 44-173 (174)
132 cd04130 Wrch_1 Wrch-1 subfamil 99.5 4.9E-13 1.1E-17 118.8 13.9 145 184-378 25-170 (173)
133 KOG0395 Ras-related GTPase [Ge 99.5 4.9E-13 1.1E-17 121.8 13.4 138 185-383 29-166 (196)
134 cd01893 Miro1 Miro1 subfamily. 99.5 7.9E-13 1.7E-17 116.6 12.9 123 217-383 43-165 (166)
135 cd04146 RERG_RasL11_like RERG/ 99.4 1.1E-12 2.3E-17 115.4 12.7 119 217-382 43-164 (165)
136 cd04147 Ras_dva Ras-dva subfam 99.4 1.4E-12 3.1E-17 118.7 13.5 121 217-382 43-163 (198)
137 cd01870 RhoA_like RhoA-like su 99.4 1.7E-12 3.7E-17 115.0 13.6 129 217-380 45-173 (175)
138 cd04102 RabL3 RabL3 (Rab-like3 99.4 1E-12 2.2E-17 120.4 9.7 77 218-304 51-145 (202)
139 PF08477 Miro: Miro-like prote 99.4 2.9E-12 6.2E-17 106.4 9.5 73 218-299 47-119 (119)
140 PTZ00132 GTP-binding nuclear p 99.4 7.9E-12 1.7E-16 115.2 13.0 116 217-383 54-169 (215)
141 KOG0393 Ras-related small GTPa 99.4 2.6E-12 5.5E-17 115.7 9.1 151 183-383 28-180 (198)
142 TIGR00231 small_GTP small GTP- 99.3 2.7E-11 5.8E-16 103.5 14.1 110 221-378 50-160 (161)
143 cd00882 Ras_like_GTPase Ras-li 99.3 3E-11 6.5E-16 101.8 13.1 113 220-378 44-156 (157)
144 cd01878 HflX HflX subfamily. 99.3 4.3E-11 9.3E-16 109.2 15.1 105 222-380 90-203 (204)
145 KOG4252 GTP-binding protein [S 99.3 2.4E-12 5.1E-17 112.3 5.0 121 217-386 65-185 (246)
146 cd01888 eIF2_gamma eIF2-gamma 99.3 7.3E-11 1.6E-15 108.1 13.2 116 221-381 83-198 (203)
147 cd04171 SelB SelB subfamily. 99.2 8.9E-11 1.9E-15 102.2 12.1 114 220-379 50-163 (164)
148 cd01890 LepA LepA subfamily. 99.2 7.1E-11 1.5E-15 104.9 11.3 113 218-381 64-176 (179)
149 cd01897 NOG NOG1 is a nucleola 99.1 7.7E-10 1.7E-14 97.1 13.1 116 217-382 43-168 (168)
150 PF00009 GTP_EFTU: Elongation 99.1 9.8E-10 2.1E-14 99.2 13.2 120 218-381 67-186 (188)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 7.9E-10 1.7E-14 96.8 11.7 118 219-381 48-165 (168)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.1 3.5E-09 7.6E-14 108.0 17.2 69 218-302 248-324 (442)
153 KOG0077 Vesicle coat complex C 99.1 1.9E-10 4E-15 99.5 5.8 77 217-303 60-136 (193)
154 PRK04213 GTP-binding protein; 99.0 1.7E-09 3.7E-14 98.3 11.6 122 222-381 53-191 (201)
155 KOG0096 GTPase Ran/TC4/GSP1 (n 99.0 8.2E-10 1.8E-14 97.5 7.8 110 175-309 26-135 (216)
156 PRK05291 trmE tRNA modificatio 99.0 8.5E-09 1.8E-13 105.6 16.2 67 219-302 261-335 (449)
157 cd00881 GTP_translation_factor 99.0 3E-09 6.6E-14 94.7 11.1 125 219-381 60-186 (189)
158 cd01891 TypA_BipA TypA (tyrosi 99.0 4.4E-09 9.6E-14 95.3 11.5 71 217-302 61-131 (194)
159 cd04105 SR_beta Signal recogni 99.0 1.3E-09 2.9E-14 99.8 8.1 77 218-303 45-124 (203)
160 cd01879 FeoB Ferrous iron tran 99.0 6.4E-09 1.4E-13 90.0 12.0 107 219-380 41-155 (158)
161 KOG1673 Ras GTPases [General f 99.0 1.2E-09 2.5E-14 93.6 6.5 139 198-382 48-186 (205)
162 PRK12317 elongation factor 1-a 99.0 1.2E-08 2.6E-13 103.9 14.8 129 200-374 69-197 (425)
163 cd01889 SelB_euk SelB subfamil 98.9 8.6E-09 1.9E-13 93.3 10.8 119 218-382 65-186 (192)
164 cd01898 Obg Obg subfamily. Th 98.9 1.2E-08 2.6E-13 89.6 11.1 115 221-380 48-169 (170)
165 TIGR01393 lepA GTP-binding pro 98.9 1.5E-08 3.3E-13 106.9 13.3 113 218-381 67-179 (595)
166 KOG4423 GTP-binding protein-li 98.9 3.2E-09 6.9E-14 93.5 5.7 123 221-385 75-197 (229)
167 KOG3883 Ras family small GTPas 98.8 4.8E-08 1E-12 83.6 12.0 136 187-382 39-175 (198)
168 TIGR02729 Obg_CgtA Obg family 98.8 2.8E-08 6E-13 97.7 11.5 130 199-381 192-328 (329)
169 cd01876 YihA_EngB The YihA (En 98.8 1E-07 2.2E-12 82.6 13.4 111 222-380 46-169 (170)
170 COG2229 Predicted GTPase [Gene 98.8 3.6E-08 7.7E-13 87.1 10.0 126 199-380 51-176 (187)
171 PRK12299 obgE GTPase CgtA; Rev 98.8 6.1E-08 1.3E-12 95.5 12.9 130 198-383 192-329 (335)
172 PRK13768 GTPase; Provisional 98.8 1.5E-08 3.3E-13 96.1 8.2 135 222-381 98-246 (253)
173 TIGR00487 IF-2 translation ini 98.8 7.6E-08 1.6E-12 101.3 13.6 112 222-379 136-247 (587)
174 TIGR03594 GTPase_EngA ribosome 98.8 4.7E-08 1E-12 99.4 11.8 116 219-382 218-344 (429)
175 cd01881 Obg_like The Obg-like 98.8 5.6E-08 1.2E-12 85.6 10.6 120 220-380 43-175 (176)
176 PRK03003 GTP-binding protein D 98.7 6.3E-08 1.4E-12 99.9 11.7 111 217-383 82-200 (472)
177 cd01883 EF1_alpha Eukaryotic e 98.7 1.9E-08 4E-13 93.3 7.0 133 200-371 62-194 (219)
178 PRK05433 GTP-binding protein L 98.7 9.4E-08 2E-12 101.1 13.1 115 217-382 70-184 (600)
179 PRK15494 era GTPase Era; Provi 98.7 8.1E-08 1.8E-12 94.9 10.3 69 219-302 98-174 (339)
180 PRK09866 hypothetical protein; 98.7 3.2E-06 6.9E-11 88.2 22.0 117 220-379 229-350 (741)
181 PRK03003 GTP-binding protein D 98.7 1.3E-07 2.7E-12 97.7 11.7 115 219-382 257-382 (472)
182 TIGR02528 EutP ethanolamine ut 98.7 2.6E-08 5.6E-13 85.1 5.6 99 224-378 38-141 (142)
183 TIGR00475 selB selenocysteine- 98.7 1.4E-07 3.1E-12 99.5 12.0 117 219-381 48-165 (581)
184 PRK10218 GTP-binding protein; 98.7 2.1E-07 4.6E-12 98.2 12.8 132 200-381 53-194 (607)
185 PRK05306 infB translation init 98.7 1.5E-07 3.2E-12 101.7 11.9 115 219-379 335-449 (787)
186 TIGR01394 TypA_BipA GTP-bindin 98.7 1.4E-07 3.1E-12 99.4 11.3 133 199-381 48-190 (594)
187 CHL00189 infB translation init 98.7 1.4E-07 3.1E-12 101.0 11.4 116 219-380 293-408 (742)
188 PRK15467 ethanolamine utilizat 98.6 7.2E-08 1.6E-12 84.7 7.5 106 225-385 41-150 (158)
189 TIGR03156 GTP_HflX GTP-binding 98.6 9.3E-08 2E-12 94.9 8.8 106 220-380 236-350 (351)
190 TIGR00437 feoB ferrous iron tr 98.6 2.4E-07 5.2E-12 97.9 11.5 109 217-380 37-153 (591)
191 cd01894 EngA1 EngA1 subfamily. 98.6 3.1E-07 6.6E-12 79.1 9.8 106 219-380 43-156 (157)
192 cd01895 EngA2 EngA2 subfamily. 98.6 6.8E-07 1.5E-11 77.9 12.0 114 219-379 48-172 (174)
193 TIGR00491 aIF-2 translation in 98.6 5E-07 1.1E-11 95.1 12.6 135 222-379 70-213 (590)
194 TIGR00483 EF-1_alpha translati 98.6 1.3E-07 2.8E-12 96.3 7.9 85 200-301 70-154 (426)
195 PRK00454 engB GTP-binding prot 98.6 9E-07 1.9E-11 79.7 12.5 111 221-381 70-193 (196)
196 PRK12296 obgE GTPase CgtA; Rev 98.6 4.9E-07 1.1E-11 92.9 11.9 124 219-383 204-341 (500)
197 PF04670 Gtr1_RagA: Gtr1/RagA 98.5 7.6E-07 1.7E-11 83.1 11.3 155 182-382 17-176 (232)
198 cd04168 TetM_like Tet(M)-like 98.5 1E-06 2.2E-11 82.8 12.2 83 200-303 49-131 (237)
199 PRK05124 cysN sulfate adenylyl 98.5 2.9E-06 6.3E-11 87.5 16.6 83 199-301 91-173 (474)
200 cd00880 Era_like Era (E. coli 98.5 1.6E-06 3.4E-11 73.7 11.6 112 220-380 44-162 (163)
201 PRK12297 obgE GTPase CgtA; Rev 98.5 1.5E-06 3.2E-11 88.1 12.7 117 220-383 205-328 (424)
202 cd04164 trmE TrmE (MnmE, ThdF, 98.5 1.8E-06 4E-11 74.1 11.4 103 218-381 46-156 (157)
203 cd04166 CysN_ATPS CysN_ATPS su 98.5 7.8E-07 1.7E-11 81.7 9.5 71 217-301 73-143 (208)
204 PRK09518 bifunctional cytidyla 98.5 1.9E-06 4E-11 93.4 13.4 116 219-383 496-622 (712)
205 PRK00093 GTP-binding protein D 98.4 1.1E-06 2.3E-11 89.7 10.4 105 218-379 46-159 (435)
206 TIGR03598 GTPase_YsxC ribosome 98.4 1.7E-06 3.6E-11 77.3 9.8 102 222-371 65-179 (179)
207 PRK00093 GTP-binding protein D 98.4 2.6E-06 5.6E-11 86.9 12.3 116 218-382 218-344 (435)
208 PRK09518 bifunctional cytidyla 98.4 1.6E-06 3.5E-11 93.9 10.6 110 218-383 320-437 (712)
209 TIGR00157 ribosome small subun 98.3 2.1E-06 4.6E-11 81.0 9.0 97 232-379 24-120 (245)
210 TIGR03680 eif2g_arch translati 98.3 1.6E-06 3.4E-11 87.9 8.6 117 220-381 79-195 (406)
211 KOG1532 GTPase XAB1, interacts 98.3 6.6E-06 1.4E-10 77.2 11.9 130 221-381 116-263 (366)
212 cd01885 EF2 EF2 (for archaea a 98.3 3.5E-06 7.7E-11 78.3 10.2 71 218-303 70-140 (222)
213 PLN03126 Elongation factor Tu; 98.3 8.1E-06 1.8E-10 84.2 13.7 71 217-302 140-211 (478)
214 cd04163 Era Era subfamily. Er 98.3 7.7E-06 1.7E-10 70.4 11.5 112 218-380 48-167 (168)
215 PRK13351 elongation factor G; 98.3 2.4E-06 5.1E-11 92.3 10.0 84 199-303 57-140 (687)
216 PRK10512 selenocysteinyl-tRNA- 98.3 5.3E-06 1.1E-10 88.1 12.3 114 221-381 51-165 (614)
217 cd01896 DRG The developmentall 98.3 6.8E-06 1.5E-10 77.0 11.8 38 219-256 45-89 (233)
218 PRK11058 GTPase HflX; Provisio 98.3 2.4E-06 5.2E-11 86.9 9.0 110 222-383 246-363 (426)
219 PRK12298 obgE GTPase CgtA; Rev 98.3 8.2E-06 1.8E-10 82.1 12.4 133 198-382 193-333 (390)
220 cd04169 RF3 RF3 subfamily. Pe 98.3 1.7E-06 3.8E-11 82.6 7.1 84 199-303 55-138 (267)
221 PF09439 SRPRB: Signal recogni 98.2 1.7E-06 3.7E-11 77.6 5.8 76 219-303 47-127 (181)
222 TIGR03594 GTPase_EngA ribosome 98.2 4.5E-06 9.8E-11 84.9 9.6 108 218-381 44-159 (429)
223 TIGR00436 era GTP-binding prot 98.2 8.8E-06 1.9E-10 77.8 10.9 65 221-301 48-120 (270)
224 PRK00741 prfC peptide chain re 98.2 6.1E-06 1.3E-10 86.1 10.1 84 199-303 63-146 (526)
225 PRK04004 translation initiatio 98.2 9.3E-06 2E-10 85.8 11.4 64 223-301 73-136 (586)
226 COG1160 Predicted GTPases [Gen 98.2 0.00024 5.1E-09 71.5 20.2 119 217-382 222-351 (444)
227 cd01884 EF_Tu EF-Tu subfamily. 98.2 2.6E-05 5.7E-10 71.0 12.3 81 200-301 50-131 (195)
228 PRK04000 translation initiatio 98.1 8.3E-06 1.8E-10 82.7 8.9 116 221-381 85-200 (411)
229 PRK00089 era GTPase Era; Revie 98.1 2.8E-05 6.1E-10 75.1 11.2 67 220-301 52-126 (292)
230 KOG0090 Signal recognition par 98.1 1E-05 2.3E-10 73.3 7.0 75 221-304 82-161 (238)
231 PRK12740 elongation factor G; 98.0 1.4E-05 3E-10 86.1 8.7 84 199-303 44-127 (668)
232 cd01886 EF-G Elongation factor 98.0 1.2E-05 2.7E-10 76.9 7.2 85 198-303 47-131 (270)
233 cd04167 Snu114p Snu114p subfam 98.0 8.8E-06 1.9E-10 74.9 6.0 69 218-301 68-136 (213)
234 PRK12736 elongation factor Tu; 98.0 6.8E-05 1.5E-09 75.7 12.5 70 217-301 71-141 (394)
235 cd01855 YqeH YqeH. YqeH is an 98.0 4E-05 8.6E-10 69.2 9.0 100 234-381 24-124 (190)
236 PRK09554 feoB ferrous iron tra 97.9 6.4E-05 1.4E-09 81.8 11.8 69 217-302 46-126 (772)
237 PF02421 FeoB_N: Ferrous iron 97.9 2.2E-05 4.8E-10 68.8 6.7 105 217-377 43-156 (156)
238 cd04165 GTPBP1_like GTPBP1-lik 97.9 7E-05 1.5E-09 69.7 10.1 71 218-303 81-153 (224)
239 PRK14845 translation initiatio 97.9 6.3E-05 1.4E-09 83.6 11.2 64 223-301 528-591 (1049)
240 KOG0462 Elongation factor-type 97.9 0.00011 2.4E-09 74.9 11.3 114 217-381 121-234 (650)
241 PLN00043 elongation factor 1-a 97.9 7.2E-05 1.6E-09 76.7 10.2 131 199-371 69-202 (447)
242 TIGR00485 EF-Tu translation el 97.9 0.00015 3.3E-09 73.2 12.5 71 217-302 71-142 (394)
243 TIGR03597 GTPase_YqeH ribosome 97.9 4.5E-05 9.8E-10 76.1 8.5 102 231-380 50-151 (360)
244 TIGR00503 prfC peptide chain r 97.9 2.5E-05 5.3E-10 81.6 6.5 83 199-302 64-146 (527)
245 PRK12735 elongation factor Tu; 97.7 0.00034 7.3E-09 70.7 11.8 71 217-302 71-142 (396)
246 cd04170 EF-G_bact Elongation f 97.7 5.3E-05 1.2E-09 72.3 5.7 72 217-303 60-131 (268)
247 TIGR00484 EF-G translation elo 97.7 7.1E-05 1.5E-09 80.9 6.8 83 200-303 60-142 (689)
248 TIGR02034 CysN sulfate adenyly 97.6 0.0002 4.4E-09 72.6 8.8 83 200-302 65-147 (406)
249 PTZ00141 elongation factor 1- 97.5 0.00074 1.6E-08 69.3 11.8 131 200-372 70-203 (446)
250 CHL00071 tufA elongation facto 97.5 0.00066 1.4E-08 68.9 10.7 82 200-302 60-142 (409)
251 COG0532 InfB Translation initi 97.4 0.00058 1.3E-08 69.8 9.0 114 220-379 54-167 (509)
252 COG0481 LepA Membrane GTPase L 97.4 0.0012 2.6E-08 66.5 10.4 135 194-381 50-185 (603)
253 PTZ00327 eukaryotic translatio 97.3 0.001 2.2E-08 68.4 9.8 115 222-381 118-232 (460)
254 PRK05506 bifunctional sulfate 97.3 0.00066 1.4E-08 72.7 8.7 72 217-302 100-171 (632)
255 cd01859 MJ1464 MJ1464. This f 97.3 0.00049 1.1E-08 59.9 6.4 94 234-381 2-95 (156)
256 cd01850 CDC_Septin CDC/Septin. 97.3 0.00052 1.1E-08 66.0 7.1 85 200-302 44-157 (276)
257 PRK00049 elongation factor Tu; 97.3 0.0032 7E-08 63.6 12.9 81 200-301 60-141 (396)
258 cd01899 Ygr210 Ygr210 subfamil 97.3 0.0038 8.2E-08 61.2 12.4 38 219-256 67-111 (318)
259 PF06858 NOG1: Nucleolar GTP-b 97.3 0.00068 1.5E-08 48.8 5.2 45 245-299 14-58 (58)
260 PLN03127 Elongation factor Tu; 97.2 0.0042 9.2E-08 63.8 12.8 83 199-302 108-191 (447)
261 KOG1144 Translation initiation 97.2 0.0017 3.6E-08 68.5 9.5 137 222-382 541-687 (1064)
262 PRK12739 elongation factor G; 97.2 0.00048 1E-08 74.5 5.7 84 199-303 57-140 (691)
263 TIGR00490 aEF-2 translation el 97.1 0.00047 1E-08 74.9 5.1 72 217-303 82-153 (720)
264 PRK08118 topology modulation p 97.1 0.00042 9.1E-09 61.5 3.9 20 49-68 3-22 (167)
265 KOG1490 GTP-binding protein CR 97.1 0.0012 2.6E-08 66.9 7.1 125 217-385 211-344 (620)
266 cd04104 p47_IIGP_like p47 (47- 97.1 0.0061 1.3E-07 55.3 10.9 122 222-382 53-184 (197)
267 PRK12289 GTPase RsgA; Reviewed 97.0 0.0021 4.6E-08 63.8 8.2 92 237-380 82-173 (352)
268 PRK00098 GTPase RsgA; Reviewed 97.0 0.0028 6.1E-08 61.6 8.6 87 242-379 78-164 (298)
269 KOG3886 GTP-binding protein [S 97.0 0.0011 2.5E-08 61.0 5.2 76 219-303 51-131 (295)
270 COG0486 ThdF Predicted GTPase 97.0 0.0049 1.1E-07 62.3 10.1 80 202-303 252-339 (454)
271 PRK07261 topology modulation p 96.9 0.00052 1.1E-08 61.1 2.6 22 49-70 2-23 (171)
272 COG1084 Predicted GTPase [Gene 96.8 0.013 2.8E-07 56.8 11.4 75 217-302 211-294 (346)
273 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0046 1E-07 53.9 7.7 48 242-302 6-53 (157)
274 KOG1707 Predicted Ras related/ 96.8 0.0029 6.3E-08 65.3 6.7 120 220-382 55-175 (625)
275 COG0563 Adk Adenylate kinase a 96.7 0.00099 2.1E-08 59.8 2.4 22 49-70 2-23 (178)
276 PRK12288 GTPase RsgA; Reviewed 96.7 0.011 2.4E-07 58.6 10.0 87 243-379 119-205 (347)
277 PF13207 AAA_17: AAA domain; P 96.6 0.0014 3.1E-08 54.1 2.6 23 49-71 1-23 (121)
278 PRK13796 GTPase YqeH; Provisio 96.6 0.013 2.8E-07 58.6 9.8 87 246-380 71-157 (365)
279 KOG1145 Mitochondrial translat 96.5 0.024 5.2E-07 58.4 11.1 114 219-378 199-312 (683)
280 PF03029 ATP_bind_1: Conserved 96.5 0.0073 1.6E-07 56.8 6.8 132 222-381 92-236 (238)
281 COG4619 ABC-type uncharacteriz 96.4 0.0027 5.9E-08 56.1 3.3 23 49-71 31-53 (223)
282 COG1159 Era GTPase [General fu 96.2 0.031 6.7E-07 53.6 9.7 69 220-303 53-129 (298)
283 KOG0705 GTPase-activating prot 96.2 0.015 3.2E-07 59.8 7.6 143 180-384 47-191 (749)
284 cd01854 YjeQ_engC YjeQ/EngC. 96.2 0.017 3.6E-07 55.9 7.7 89 239-379 73-161 (287)
285 cd01852 AIG1 AIG1 (avrRpt2-ind 96.2 0.029 6.3E-07 50.7 8.8 126 219-383 47-185 (196)
286 PRK06217 hypothetical protein; 96.1 0.0032 7E-08 56.5 2.3 23 49-71 3-25 (183)
287 PF00025 Arf: ADP-ribosylation 96.1 0.0034 7.3E-08 55.9 2.3 24 45-68 12-35 (175)
288 PF13555 AAA_29: P-loop contai 96.1 0.006 1.3E-07 44.9 3.1 22 50-71 26-47 (62)
289 KOG1489 Predicted GTP-binding 96.1 0.079 1.7E-06 51.3 11.4 112 223-379 246-364 (366)
290 PF13671 AAA_33: AAA domain; P 96.1 0.004 8.6E-08 52.9 2.5 19 50-68 2-20 (143)
291 COG1217 TypA Predicted membran 96.0 0.058 1.3E-06 54.7 10.8 134 198-381 51-194 (603)
292 COG5256 TEF1 Translation elong 96.0 0.025 5.5E-07 56.5 8.0 135 197-372 67-201 (428)
293 COG1126 GlnQ ABC-type polar am 95.9 0.0046 1E-07 56.7 2.2 23 49-71 30-52 (240)
294 PRK00007 elongation factor G; 95.9 0.014 3E-07 63.3 6.1 72 217-303 71-142 (693)
295 cd04113 Rab4 Rab4 subfamily. 95.8 0.0056 1.2E-07 52.9 2.4 21 48-68 1-21 (161)
296 PF01926 MMR_HSR1: 50S ribosom 95.8 0.0061 1.3E-07 50.0 2.4 62 220-297 46-116 (116)
297 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.0056 1.2E-07 52.5 2.3 21 48-68 2-22 (162)
298 COG1160 Predicted GTPases [Gen 95.8 0.032 6.9E-07 56.5 7.8 69 218-301 48-125 (444)
299 PTZ00416 elongation factor 2; 95.7 0.016 3.4E-07 64.2 5.8 70 218-302 89-158 (836)
300 TIGR00101 ureG urease accessor 95.7 0.04 8.8E-07 50.3 7.6 26 357-382 171-196 (199)
301 cd00879 Sar1 Sar1 subfamily. 95.6 0.007 1.5E-07 54.0 2.3 24 45-68 17-40 (190)
302 cd01857 HSR1_MMR1 HSR1/MMR1. 95.6 0.035 7.6E-07 47.4 6.5 48 242-302 9-56 (141)
303 TIGR01313 therm_gnt_kin carboh 95.6 0.028 6.1E-07 49.1 6.0 21 50-70 1-21 (163)
304 COG2262 HflX GTPases [General 95.5 0.067 1.5E-06 53.4 8.7 110 220-382 239-356 (411)
305 PF10662 PduV-EutP: Ethanolami 95.4 0.07 1.5E-06 46.0 7.7 99 225-378 40-142 (143)
306 COG0536 Obg Predicted GTPase [ 95.4 0.11 2.4E-06 50.8 9.8 134 200-385 195-336 (369)
307 COG4598 HisP ABC-type histidin 95.4 0.012 2.6E-07 52.6 2.8 24 49-72 34-57 (256)
308 PRK10078 ribose 1,5-bisphospho 95.4 0.0098 2.1E-07 53.5 2.4 22 49-70 4-25 (186)
309 PRK09435 membrane ATPase/prote 95.4 0.16 3.5E-06 50.0 11.0 113 219-381 147-259 (332)
310 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.6E-07 48.7 2.6 21 50-70 1-21 (129)
311 cd01849 YlqF_related_GTPase Yl 95.3 0.13 2.9E-06 44.5 9.3 23 359-381 62-84 (155)
312 cd01856 YlqF YlqF. Proteins o 95.3 0.038 8.2E-07 48.9 5.9 23 359-381 78-100 (171)
313 PF00071 Ras: Ras family; Int 95.3 0.011 2.4E-07 51.0 2.4 19 49-67 1-19 (162)
314 PRK03839 putative kinase; Prov 95.3 0.011 2.3E-07 52.7 2.3 23 49-71 2-24 (180)
315 TIGR02322 phosphon_PhnN phosph 95.3 0.011 2.4E-07 52.5 2.4 23 49-71 3-25 (179)
316 cd04124 RabL2 RabL2 subfamily. 95.2 0.012 2.6E-07 51.2 2.4 21 48-68 1-21 (161)
317 PRK07560 elongation factor EF- 95.2 0.017 3.8E-07 62.9 4.1 73 218-305 84-156 (731)
318 PTZ00133 ADP-ribosylation fact 95.2 0.011 2.5E-07 52.7 2.2 24 45-68 15-38 (182)
319 cd04150 Arf1_5_like Arf1-Arf5- 95.2 0.012 2.7E-07 51.1 2.4 20 48-67 1-20 (159)
320 PF00005 ABC_tran: ABC transpo 95.2 0.013 2.8E-07 49.4 2.4 23 49-71 13-35 (137)
321 TIGR00073 hypB hydrogenase acc 95.2 0.11 2.3E-06 47.6 8.7 24 357-380 182-205 (207)
322 cd02019 NK Nucleoside/nucleoti 95.2 0.016 3.4E-07 43.4 2.6 22 50-71 2-23 (69)
323 cd00071 GMPK Guanosine monopho 95.2 0.015 3.3E-07 49.7 2.8 23 50-72 2-24 (137)
324 PRK13949 shikimate kinase; Pro 95.2 0.013 2.7E-07 52.1 2.4 23 49-71 3-25 (169)
325 PLN00116 translation elongatio 95.1 0.025 5.4E-07 62.7 5.1 68 219-301 96-163 (843)
326 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.014 3E-07 52.0 2.4 22 50-71 2-23 (183)
327 cd01868 Rab11_like Rab11-like. 95.1 0.014 3E-07 50.6 2.4 21 47-67 3-23 (165)
328 cd04136 Rap_like Rap-like subf 95.1 0.014 3E-07 50.3 2.3 21 48-68 2-22 (163)
329 cd04135 Tc10 TC10 subfamily. 95.1 0.014 3.1E-07 51.0 2.4 20 48-67 1-20 (174)
330 cd00820 PEPCK_HprK Phosphoenol 95.0 0.015 3.3E-07 47.7 2.3 19 49-67 17-35 (107)
331 PF13521 AAA_28: AAA domain; P 95.0 0.014 3E-07 51.1 2.2 22 49-70 1-22 (163)
332 PRK14530 adenylate kinase; Pro 95.0 0.017 3.7E-07 53.1 2.9 24 48-71 4-27 (215)
333 cd01428 ADK Adenylate kinase ( 95.0 0.015 3.2E-07 52.1 2.4 23 49-71 1-23 (194)
334 TIGR01360 aden_kin_iso1 adenyl 95.0 0.015 3.2E-07 51.8 2.4 24 48-71 4-27 (188)
335 cd02021 GntK Gluconate kinase 95.0 0.015 3.3E-07 50.0 2.4 21 50-70 2-22 (150)
336 PRK08233 hypothetical protein; 95.0 0.015 3.3E-07 51.4 2.4 23 48-70 4-26 (182)
337 cd04117 Rab15 Rab15 subfamily. 95.0 0.016 3.5E-07 50.4 2.4 20 48-67 1-20 (161)
338 PF10662 PduV-EutP: Ethanolami 95.0 0.016 3.5E-07 50.0 2.3 20 49-68 3-22 (143)
339 cd04107 Rab32_Rab38 Rab38/Rab3 94.9 0.016 3.4E-07 52.5 2.4 21 48-68 1-21 (201)
340 TIGR01351 adk adenylate kinase 94.9 0.019 4.1E-07 52.6 2.9 23 49-71 1-23 (210)
341 cd04106 Rab23_lke Rab23-like s 94.9 0.017 3.6E-07 49.8 2.4 21 48-68 1-21 (162)
342 PRK14532 adenylate kinase; Pro 94.9 0.016 3.5E-07 52.0 2.4 23 49-71 2-24 (188)
343 PLN00223 ADP-ribosylation fact 94.9 0.016 3.4E-07 51.9 2.2 24 45-68 15-38 (181)
344 cd02023 UMPK Uridine monophosp 94.9 0.021 4.7E-07 51.6 3.2 22 50-71 2-23 (198)
345 cd04145 M_R_Ras_like M-Ras/R-R 94.9 0.017 3.6E-07 49.9 2.3 21 47-67 2-22 (164)
346 smart00178 SAR Sar1p-like memb 94.9 0.016 3.5E-07 51.7 2.3 24 45-68 15-38 (184)
347 COG3638 ABC-type phosphate/pho 94.9 0.028 6E-07 52.3 3.8 24 49-72 32-55 (258)
348 COG1116 TauB ABC-type nitrate/ 94.9 0.017 3.6E-07 54.2 2.4 22 49-70 31-52 (248)
349 cd04103 Centaurin_gamma Centau 94.9 0.018 3.8E-07 50.3 2.4 20 48-67 1-20 (158)
350 cd04141 Rit_Rin_Ric Rit/Rin/Ri 94.8 0.017 3.8E-07 51.0 2.3 22 47-68 2-23 (172)
351 TIGR03263 guanyl_kin guanylate 94.8 0.018 3.9E-07 51.1 2.4 21 49-69 3-23 (180)
352 smart00177 ARF ARF-like small 94.8 0.017 3.7E-07 51.2 2.2 22 46-67 12-33 (175)
353 cd03238 ABC_UvrA The excision 94.8 0.018 3.8E-07 51.6 2.4 19 49-67 23-41 (176)
354 COG4639 Predicted kinase [Gene 94.8 0.017 3.6E-07 50.4 2.1 18 50-67 5-22 (168)
355 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.8 0.017 3.8E-07 50.9 2.3 23 46-68 14-36 (174)
356 COG1136 SalX ABC-type antimicr 94.8 0.018 4E-07 53.5 2.4 37 49-85 33-82 (226)
357 cd04149 Arf6 Arf6 subfamily. 94.8 0.018 3.8E-07 50.7 2.2 23 46-68 8-30 (168)
358 cd03283 ABC_MutS-like MutS-lik 94.7 0.019 4.1E-07 52.4 2.4 20 49-68 27-46 (199)
359 PRK14531 adenylate kinase; Pro 94.7 0.023 5.1E-07 50.9 2.9 23 49-71 4-26 (183)
360 cd00877 Ran Ran (Ras-related n 94.7 0.02 4.3E-07 50.2 2.4 20 48-67 1-20 (166)
361 cd04140 ARHI_like ARHI subfami 94.7 0.02 4.3E-07 49.9 2.4 20 48-67 2-21 (165)
362 COG3839 MalK ABC-type sugar tr 94.7 0.019 4E-07 56.6 2.4 22 50-71 32-53 (338)
363 COG1117 PstB ABC-type phosphat 94.7 0.021 4.7E-07 52.4 2.6 22 50-71 36-57 (253)
364 cd00227 CPT Chloramphenicol (C 94.7 0.027 5.8E-07 50.0 3.2 22 50-71 5-26 (175)
365 PTZ00088 adenylate kinase 1; P 94.7 0.024 5.1E-07 53.0 3.0 25 47-71 6-30 (229)
366 smart00382 AAA ATPases associa 94.7 0.021 4.6E-07 46.9 2.4 23 49-71 4-26 (148)
367 COG1120 FepC ABC-type cobalami 94.7 0.02 4.3E-07 54.3 2.4 22 50-71 31-52 (258)
368 PTZ00132 GTP-binding nuclear p 94.7 0.02 4.4E-07 52.4 2.4 22 46-67 8-29 (215)
369 PRK00300 gmk guanylate kinase; 94.7 0.02 4.4E-07 51.9 2.4 23 49-71 7-29 (205)
370 TIGR00235 udk uridine kinase. 94.6 0.021 4.5E-07 52.2 2.4 24 48-71 7-30 (207)
371 cd01870 RhoA_like RhoA-like su 94.6 0.022 4.7E-07 49.9 2.4 21 48-68 2-22 (175)
372 PLN03108 Rab family protein; P 94.6 0.021 4.6E-07 52.2 2.4 22 47-68 6-27 (210)
373 COG1125 OpuBA ABC-type proline 94.5 0.024 5.2E-07 53.4 2.5 22 50-71 30-51 (309)
374 cd04163 Era Era subfamily. Er 94.5 0.022 4.7E-07 48.6 2.2 22 47-68 3-24 (168)
375 TIGR03238 dnd_assoc_3 dnd syst 94.5 0.027 5.8E-07 57.8 3.0 36 30-65 11-50 (504)
376 cd04151 Arl1 Arl1 subfamily. 94.5 0.024 5.2E-07 48.9 2.4 20 49-68 1-20 (158)
377 PRK02496 adk adenylate kinase; 94.5 0.028 6.1E-07 50.2 2.9 24 48-71 2-25 (184)
378 TIGR01526 nadR_NMN_Atrans nico 94.5 0.028 6E-07 55.4 3.1 31 48-78 163-193 (325)
379 cd01874 Cdc42 Cdc42 subfamily. 94.5 0.023 5E-07 50.4 2.3 22 47-68 1-22 (175)
380 cd01853 Toc34_like Toc34-like 94.5 0.045 9.8E-07 51.8 4.4 26 42-67 26-51 (249)
381 cd01893 Miro1 Miro1 subfamily. 94.5 0.024 5.3E-07 49.4 2.4 21 48-68 1-21 (166)
382 cd04118 Rab24 Rab24 subfamily. 94.5 0.024 5.2E-07 50.7 2.4 20 48-67 1-20 (193)
383 cd04156 ARLTS1 ARLTS1 subfamil 94.5 0.026 5.5E-07 48.6 2.4 20 49-68 1-20 (160)
384 cd04159 Arl10_like Arl10-like 94.5 0.026 5.6E-07 47.8 2.4 20 49-68 1-20 (159)
385 cd01895 EngA2 EngA2 subfamily. 94.5 0.025 5.3E-07 48.8 2.3 21 47-67 2-22 (174)
386 COG3842 PotA ABC-type spermidi 94.5 0.023 5.1E-07 56.2 2.4 22 50-71 34-55 (352)
387 cd04132 Rho4_like Rho4-like su 94.5 0.025 5.4E-07 50.3 2.4 20 48-67 1-20 (187)
388 TIGR02528 EutP ethanolamine ut 94.5 0.026 5.6E-07 47.7 2.4 19 49-67 2-20 (142)
389 PF00004 AAA: ATPase family as 94.4 0.027 5.9E-07 46.6 2.5 21 50-70 1-21 (132)
390 PF01926 MMR_HSR1: 50S ribosom 94.4 0.16 3.5E-06 41.4 7.0 19 49-67 1-19 (116)
391 PRK06762 hypothetical protein; 94.4 0.034 7.3E-07 48.7 3.1 23 49-71 4-26 (166)
392 cd04158 ARD1 ARD1 subfamily. 94.4 0.027 5.8E-07 49.4 2.4 20 49-68 1-20 (169)
393 PTZ00369 Ras-like protein; Pro 94.4 0.026 5.7E-07 50.5 2.4 23 46-68 4-26 (189)
394 PRK00279 adk adenylate kinase; 94.4 0.031 6.7E-07 51.4 2.9 23 49-71 2-24 (215)
395 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.026 5.7E-07 53.3 2.4 22 49-70 32-53 (254)
396 cd04164 trmE TrmE (MnmE, ThdF, 94.4 0.028 6E-07 47.8 2.4 21 48-68 2-22 (157)
397 cd02025 PanK Pantothenate kina 94.3 0.03 6.5E-07 51.9 2.7 22 50-71 2-23 (220)
398 cd03274 ABC_SMC4_euk Eukaryoti 94.3 0.043 9.4E-07 50.5 3.8 23 50-72 28-50 (212)
399 cd03243 ABC_MutS_homologs The 94.3 0.027 5.8E-07 51.3 2.3 20 49-68 31-50 (202)
400 KOG3354 Gluconate kinase [Carb 94.3 0.068 1.5E-06 46.6 4.6 19 49-67 14-32 (191)
401 cd04152 Arl4_Arl7 Arl4/Arl7 su 94.3 0.028 6.1E-07 50.1 2.4 21 47-67 3-23 (183)
402 PRK05480 uridine/cytidine kina 94.3 0.027 5.8E-07 51.5 2.2 26 46-71 5-30 (209)
403 cd03222 ABC_RNaseL_inhibitor T 94.3 0.027 5.9E-07 50.4 2.2 23 49-71 27-49 (177)
404 COG0480 FusA Translation elong 94.3 0.066 1.4E-06 57.7 5.5 85 198-303 58-143 (697)
405 TIGR03598 GTPase_YsxC ribosome 94.3 0.028 6E-07 49.9 2.2 24 45-68 16-39 (179)
406 KOG1191 Mitochondrial GTPase [ 94.2 0.18 3.9E-06 51.5 8.1 135 204-384 305-452 (531)
407 COG2274 SunT ABC-type bacterio 94.2 0.026 5.7E-07 61.1 2.4 26 48-73 500-525 (709)
408 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.2 0.029 6.2E-07 51.5 2.4 23 49-71 32-54 (218)
409 cd03264 ABC_drug_resistance_li 94.2 0.03 6.5E-07 51.2 2.4 23 49-71 27-49 (211)
410 cd03292 ABC_FtsE_transporter F 94.2 0.03 6.4E-07 51.2 2.4 23 49-71 29-51 (214)
411 cd03219 ABC_Mj1267_LivG_branch 94.2 0.029 6.3E-07 52.1 2.4 23 49-71 28-50 (236)
412 COG0218 Predicted GTPase [Gene 94.2 0.62 1.3E-05 42.4 10.7 126 200-381 58-196 (200)
413 COG1122 CbiO ABC-type cobalt t 94.2 0.028 6.2E-07 52.7 2.2 24 49-72 32-55 (235)
414 TIGR00960 3a0501s02 Type II (G 94.1 0.031 6.7E-07 51.3 2.4 23 49-71 31-53 (216)
415 cd03226 ABC_cobalt_CbiO_domain 94.1 0.031 6.8E-07 50.8 2.4 23 49-71 28-50 (205)
416 cd00878 Arf_Arl Arf (ADP-ribos 94.1 0.033 7.1E-07 47.9 2.4 20 49-68 1-20 (158)
417 COG4615 PvdE ABC-type sideroph 94.1 0.039 8.5E-07 55.0 3.1 38 50-87 352-399 (546)
418 TIGR02673 FtsE cell division A 94.1 0.032 6.9E-07 51.0 2.4 23 49-71 30-52 (214)
419 PRK06547 hypothetical protein; 94.1 0.046 1E-06 48.7 3.3 24 45-68 13-36 (172)
420 cd04146 RERG_RasL11_like RERG/ 94.1 0.035 7.5E-07 48.2 2.4 19 49-67 1-19 (165)
421 TIGR01166 cbiO cobalt transpor 94.0 0.034 7.3E-07 50.0 2.4 23 49-71 20-42 (190)
422 cd04109 Rab28 Rab28 subfamily. 94.0 0.033 7.2E-07 51.1 2.4 20 48-67 1-20 (215)
423 COG2895 CysN GTPases - Sulfate 94.0 0.49 1.1E-05 46.6 10.3 121 201-371 72-192 (431)
424 PRK15177 Vi polysaccharide exp 94.0 0.034 7.3E-07 51.2 2.4 23 49-71 15-37 (213)
425 cd03259 ABC_Carb_Solutes_like 94.0 0.034 7.3E-07 50.9 2.4 23 49-71 28-50 (213)
426 cd03272 ABC_SMC3_euk Eukaryoti 94.0 0.04 8.6E-07 51.5 2.9 25 49-73 25-49 (243)
427 PRK14527 adenylate kinase; Pro 94.0 0.035 7.5E-07 50.1 2.4 23 49-71 8-30 (191)
428 cd03269 ABC_putative_ATPase Th 94.0 0.035 7.5E-07 50.7 2.4 23 49-71 28-50 (210)
429 cd04161 Arl2l1_Arl13_like Arl2 94.0 0.036 7.9E-07 48.6 2.4 20 49-68 1-20 (167)
430 cd03262 ABC_HisP_GlnQ_permease 94.0 0.035 7.5E-07 50.7 2.4 23 49-71 28-50 (213)
431 TIGR02211 LolD_lipo_ex lipopro 94.0 0.035 7.6E-07 51.0 2.4 23 49-71 33-55 (221)
432 cd04157 Arl6 Arl6 subfamily. 94.0 0.037 8E-07 47.5 2.4 20 49-68 1-20 (162)
433 cd03261 ABC_Org_Solvent_Resist 94.0 0.035 7.6E-07 51.6 2.4 23 49-71 28-50 (235)
434 PRK09270 nucleoside triphospha 94.0 0.075 1.6E-06 49.4 4.6 38 33-70 19-56 (229)
435 cd03265 ABC_DrrA DrrA is the A 94.0 0.035 7.7E-07 51.1 2.4 23 49-71 28-50 (220)
436 TIGR02315 ABC_phnC phosphonate 94.0 0.035 7.6E-07 51.9 2.4 23 49-71 30-52 (243)
437 PRK14528 adenylate kinase; Pro 94.0 0.044 9.5E-07 49.4 2.9 23 49-71 3-25 (186)
438 PLN03071 GTP-binding nuclear p 93.9 0.035 7.7E-07 51.2 2.3 23 45-67 11-33 (219)
439 cd03263 ABC_subfamily_A The AB 93.9 0.036 7.8E-07 50.9 2.4 23 49-71 30-52 (220)
440 PRK05057 aroK shikimate kinase 93.9 0.037 8E-07 49.2 2.4 22 49-70 6-27 (172)
441 KOG3887 Predicted small GTPase 93.9 1.5 3.2E-05 41.2 12.7 124 221-383 75-203 (347)
442 cd00464 SK Shikimate kinase (S 93.9 0.038 8.3E-07 47.4 2.4 22 50-71 2-23 (154)
443 PRK01889 GTPase RsgA; Reviewed 93.9 0.29 6.2E-06 48.8 8.9 47 242-302 110-156 (356)
444 COG4559 ABC-type hemin transpo 93.9 0.036 7.9E-07 50.9 2.3 49 49-97 29-90 (259)
445 cd03301 ABC_MalK_N The N-termi 93.9 0.037 8E-07 50.6 2.4 23 49-71 28-50 (213)
446 cd04130 Wrch_1 Wrch-1 subfamil 93.9 0.038 8.2E-07 48.5 2.4 20 48-67 1-20 (173)
447 cd04111 Rab39 Rab39 subfamily. 93.9 0.036 7.9E-07 50.8 2.4 22 47-68 2-23 (211)
448 cd03225 ABC_cobalt_CbiO_domain 93.9 0.037 8E-07 50.5 2.4 23 49-71 29-51 (211)
449 cd03266 ABC_NatA_sodium_export 93.9 0.037 8.1E-07 50.7 2.4 23 49-71 33-55 (218)
450 cd03224 ABC_TM1139_LivF_branch 93.9 0.037 8.1E-07 50.8 2.4 23 49-71 28-50 (222)
451 cd04108 Rab36_Rab34 Rab34/Rab3 93.9 0.039 8.4E-07 48.6 2.4 20 49-68 2-21 (170)
452 TIGR03410 urea_trans_UrtE urea 93.8 0.037 8.1E-07 51.2 2.3 23 49-71 28-50 (230)
453 COG4108 PrfC Peptide chain rel 93.8 0.14 3E-06 51.7 6.3 77 206-303 72-148 (528)
454 PF05729 NACHT: NACHT domain 93.8 0.04 8.7E-07 47.5 2.4 18 50-67 3-20 (166)
455 cd03293 ABC_NrtD_SsuB_transpor 93.8 0.039 8.4E-07 50.8 2.4 23 49-71 32-54 (220)
456 PRK14738 gmk guanylate kinase; 93.8 0.04 8.8E-07 50.4 2.5 21 48-68 14-34 (206)
457 cd03214 ABC_Iron-Siderophores_ 93.8 0.039 8.5E-07 49.2 2.4 23 49-71 27-49 (180)
458 cd03229 ABC_Class3 This class 93.8 0.04 8.7E-07 49.1 2.4 23 49-71 28-50 (178)
459 cd03247 ABCC_cytochrome_bd The 93.8 0.04 8.7E-07 49.0 2.4 23 49-71 30-52 (178)
460 cd03235 ABC_Metallic_Cations A 93.8 0.039 8.5E-07 50.5 2.4 23 49-71 27-49 (213)
461 cd03218 ABC_YhbG The ABC trans 93.8 0.039 8.5E-07 51.1 2.4 23 49-71 28-50 (232)
462 COG1127 Ttg2A ABC-type transpo 93.8 0.061 1.3E-06 50.2 3.6 22 50-71 37-58 (263)
463 cd03258 ABC_MetN_methionine_tr 93.8 0.04 8.6E-07 51.2 2.4 23 49-71 33-55 (233)
464 TIGR03608 L_ocin_972_ABC putat 93.8 0.04 8.6E-07 50.0 2.4 23 49-71 26-48 (206)
465 cd03216 ABC_Carb_Monos_I This 93.8 0.042 9E-07 48.3 2.4 23 49-71 28-50 (163)
466 TIGR01978 sufC FeS assembly AT 93.8 0.04 8.6E-07 51.4 2.4 22 49-70 28-49 (243)
467 cd03232 ABC_PDR_domain2 The pl 93.8 0.041 8.8E-07 49.7 2.4 21 49-69 35-55 (192)
468 PF00485 PRK: Phosphoribulokin 93.8 0.051 1.1E-06 49.1 3.0 23 50-72 2-24 (194)
469 PRK09825 idnK D-gluconate kina 93.8 0.041 9E-07 49.1 2.4 23 49-71 5-27 (176)
470 cd03230 ABC_DR_subfamily_A Thi 93.8 0.042 9.1E-07 48.7 2.4 23 49-71 28-50 (173)
471 PRK14529 adenylate kinase; Pro 93.8 0.05 1.1E-06 50.6 3.0 23 49-71 2-24 (223)
472 cd03256 ABC_PhnC_transporter A 93.7 0.04 8.8E-07 51.3 2.4 23 49-71 29-51 (241)
473 cd03234 ABCG_White The White s 93.7 0.041 8.9E-07 50.9 2.4 23 49-71 35-57 (226)
474 PRK00131 aroK shikimate kinase 93.7 0.043 9.3E-07 48.0 2.4 24 48-71 5-28 (175)
475 cd00009 AAA The AAA+ (ATPases 93.7 0.085 1.8E-06 43.7 4.1 24 47-70 19-42 (151)
476 cd03223 ABCD_peroxisomal_ALDP 93.7 0.043 9.3E-07 48.4 2.4 23 49-71 29-51 (166)
477 cd03280 ABC_MutS2 MutS2 homolo 93.7 0.042 9.2E-07 49.9 2.4 20 49-68 30-49 (200)
478 cd01875 RhoG RhoG subfamily. 93.7 0.043 9.3E-07 49.4 2.4 22 47-68 3-24 (191)
479 COG4618 ArpD ABC-type protease 93.7 0.033 7.2E-07 57.0 1.8 23 50-72 365-387 (580)
480 PRK11629 lolD lipoprotein tran 93.7 0.042 9.2E-07 51.1 2.4 23 49-71 37-59 (233)
481 cd03257 ABC_NikE_OppD_transpor 93.7 0.042 9.2E-07 50.7 2.4 23 49-71 33-55 (228)
482 PHA02530 pseT polynucleotide k 93.7 0.042 9E-07 53.0 2.4 22 50-71 5-26 (300)
483 PRK13540 cytochrome c biogenes 93.7 0.043 9.4E-07 49.8 2.4 23 49-71 29-51 (200)
484 TIGR02868 CydC thiol reductant 93.7 0.042 9E-07 57.6 2.5 25 48-72 362-386 (529)
485 cd03254 ABCC_Glucan_exporter_l 93.6 0.044 9.6E-07 50.7 2.4 23 49-71 31-53 (229)
486 PRK00625 shikimate kinase; Pro 93.6 0.046 1E-06 48.8 2.4 21 49-69 2-22 (173)
487 TIGR03574 selen_PSTK L-seryl-t 93.6 0.046 1E-06 51.5 2.5 22 50-71 2-23 (249)
488 cd03296 ABC_CysA_sulfate_impor 93.6 0.044 9.6E-07 51.1 2.4 23 49-71 30-52 (239)
489 TIGR02770 nickel_nikD nickel i 93.6 0.044 9.6E-07 50.8 2.4 24 49-72 14-37 (230)
490 COG2884 FtsE Predicted ATPase 93.6 0.047 1E-06 49.3 2.3 19 50-68 31-49 (223)
491 cd02027 APSK Adenosine 5'-phos 93.6 0.047 1E-06 47.3 2.4 22 50-71 2-23 (149)
492 cd03215 ABC_Carb_Monos_II This 93.6 0.046 1E-06 48.8 2.4 23 49-71 28-50 (182)
493 PRK13695 putative NTPase; Prov 93.6 0.047 1E-06 48.4 2.4 20 48-67 1-20 (174)
494 cd03297 ABC_ModC_molybdenum_tr 93.6 0.046 9.9E-07 50.1 2.4 24 48-71 24-47 (214)
495 cd04104 p47_IIGP_like p47 (47- 93.6 0.046 1E-06 49.5 2.4 21 48-68 2-22 (197)
496 PRK14737 gmk guanylate kinase; 93.6 0.047 1E-06 49.3 2.4 19 50-68 7-25 (186)
497 cd01871 Rac1_like Rac1-like su 93.6 0.047 1E-06 48.3 2.4 20 48-67 2-21 (174)
498 PRK14242 phosphate transporter 93.6 0.045 9.9E-07 51.5 2.4 22 49-70 34-55 (253)
499 cd03260 ABC_PstB_phosphate_tra 93.6 0.046 1E-06 50.5 2.4 23 49-71 28-50 (227)
500 PRK11701 phnK phosphonate C-P 93.5 0.045 9.8E-07 51.7 2.4 23 49-71 34-56 (258)
No 1
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-93 Score=685.35 Aligned_cols=353 Identities=46% Similarity=0.757 Sum_probs=323.5
Q ss_pred ccCccCCCCCCChhhHHHHHHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHH
Q 016253 9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH 88 (392)
Q Consensus 9 m~~~~~~~~~~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~ 88 (392)
||++||+ +.+++.++|++||++|+.++++.++.+|+||||+||||||||+||||++|..||+.+|+..|+.+|+
T Consensus 1 MG~~~s~------e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~ 74 (354)
T KOG0082|consen 1 MGCICSA------EEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIY 74 (354)
T ss_pred CCcccCc------hhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8998883 3456677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHhccCCCC-CcCCcHHHHHHHHHhcCChHHHHHHHccCCC
Q 016253 89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLD-YPRLTKELAEDIETLWADPAIQETYAHGNEL 167 (392)
Q Consensus 89 ~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~ 167 (392)
.|+++++..|++++..++++.. +|..+..+..+........ .++++++++++|++||+||+||+||+|+++|
T Consensus 75 ~N~~~~~~~ll~a~~~~~i~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~ 147 (354)
T KOG0082|consen 75 SNIIQSLKALLRAMETLGINLD-------DPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREF 147 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------ChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcC
Confidence 9999999999999998876532 3445555555544333322 2579999999999999999999999999999
Q ss_pred CCCcchHHHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCE
Q 016253 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 247 (392)
Q Consensus 168 ~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~ 247 (392)
+|+|++.|||++++||+.|+|.||++||||+|+||+||.++.| ..++.+++++|||||+++|++|.|||++|++
T Consensus 148 ~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F------~~k~~~f~~~DvGGQRseRrKWihcFe~v~a 221 (354)
T KOG0082|consen 148 QLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVEVEF------TIKGLKFRMFDVGGQRSERKKWIHCFEDVTA 221 (354)
T ss_pred CCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeEEEE------EeCCCceEEEeCCCcHHHhhhHHHhhcCCCE
Confidence 9999999999999999999999999999999999999999999 8888999999999999999999999999999
Q ss_pred EEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcc
Q 016253 248 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ 327 (392)
Q Consensus 248 iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~ 327 (392)
||||+++|+|||++.||..+|||.+|+.+|++|||++||.+++||||+||.|||+||++.+|+. .|||+| .|.+
T Consensus 222 viF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~--~~Fpdy----~G~~ 295 (354)
T KOG0082|consen 222 VIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLT--DCFPDY----KGVN 295 (354)
T ss_pred EEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchh--hhCcCC----CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999777764 569999 5768
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 328 EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 328 ~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
++++|.+||..+|.+++++ ..|++|+|+|||+||+||+.||++|.++|+++||+.+||+
T Consensus 296 ~~~~a~~yI~~kF~~l~~~------~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~~gl~ 354 (354)
T KOG0082|consen 296 TYEEAAKYIRKKFEELNKN------KDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKDAGLI 354 (354)
T ss_pred ChHHHHHHHHHHHHHHhcc------cCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999743 1378999999999999999999999999999999999985
No 2
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-90 Score=620.67 Aligned_cols=356 Identities=36% Similarity=0.617 Sum_probs=328.9
Q ss_pred HhhccCccCCCCCCChhhHHHHHHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHH
Q 016253 6 IENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYIS 85 (392)
Q Consensus 6 ~~~m~~~~~~~~~~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~ 85 (392)
++.|+|||- +++.+++++.+++|+++|.++++..++++|+||||+|+||||||+||||++|+.|||+++++.|.+
T Consensus 3 ~~~~~~ccl-----see~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~ 77 (359)
T KOG0085|consen 3 SLTWMCCCL-----SEEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTK 77 (359)
T ss_pred hhhhhHhhC-----cHhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchH
Confidence 456777774 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHhccCCCCCcCCcHHHHHHHHHhcCChHHHHHHHccC
Q 016253 86 VIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGN 165 (392)
Q Consensus 86 ~i~~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~ 165 (392)
.||+|++.+|+++|++|+.|.+++ ..+++++++..+.+.+... ...+...++.+|++||.|||||+||.||+
T Consensus 78 lvyqnif~amqaMIrAMetL~I~y-------~~e~nk~~A~~vrevd~ek-Vttfe~~yv~aik~LW~D~GIqeCYdRRR 149 (359)
T KOG0085|consen 78 LVYQNIFTAMQAMIRAMETLKIPY-------KREENKAHASLVREVDVEK-VTTFEKRYVSAIKWLWRDPGIQECYDRRR 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhHhhhcchHH-hhhhhHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999999999999999999864 2578888888887765321 24678899999999999999999999999
Q ss_pred CCCCCcchHHHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhcccccc
Q 016253 166 ELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGV 245 (392)
Q Consensus 166 ~~~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~ 245 (392)
||||.|++.|+|.+++||+.|.|.||.+|+||.|+||+||.+++| +..++.|++.|||||+++|++|+|||+++
T Consensus 150 EyqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eypf------dl~~iifrmvDvGGqrserrKWIHCFEnv 223 (359)
T KOG0085|consen 150 EYQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYPF------DLQKIIFRMVDVGGQRSERRKWIHCFENV 223 (359)
T ss_pred HhhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecCc------chhhheeeeeecCCchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred CEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCC
Q 016253 246 SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG 325 (392)
Q Consensus 246 ~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g 325 (392)
++++|++++|+|||+|.|+.+.|||+||+.+|..++..|||.+.++|||+||.|++++|+..+.+-++ ||+| .|
T Consensus 224 tsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~Y--FPe~----~G 297 (359)
T KOG0085|consen 224 TSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADY--FPEF----DG 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHh--Cccc----CC
Confidence 99999999999999999999999999999999999999999999999999999999999987665443 6666 78
Q ss_pred c-ccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 326 K-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 326 ~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
+ .+.+.|.+||.++|.+++ |+ +++.+|.|+|||+||+||+.||.+|+|+|++.||++.+|.
T Consensus 298 P~qDa~AAreFILkm~~d~n-----Pd-~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~NLv 359 (359)
T KOG0085|consen 298 PKQDAQAAREFILKMYVDMN-----PD-SDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 359 (359)
T ss_pred CcccHHHHHHHHHHHHHhhC-----CC-ccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhccC
Confidence 7 799999999999999874 22 3567999999999999999999999999999999998874
No 3
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=2e-80 Score=563.55 Aligned_cols=369 Identities=32% Similarity=0.554 Sum_probs=325.4
Q ss_pred ccCccCCCCC-CChhhHHHHHHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHH
Q 016253 9 MGLLCSKNRR-YNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVI 87 (392)
Q Consensus 9 m~~~~~~~~~-~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i 87 (392)
|||+.+..+. .....+++.++|+.|+++|..++...+.+.|+||||+||||||||+||||++|-.||+++|+..-.+-|
T Consensus 1 m~~~~~k~~~~~~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI 80 (379)
T KOG0099|consen 1 MGCLGSKKTEDQRAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDI 80 (379)
T ss_pred CCcccCCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHH
Confidence 6765433221 124457789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHhccCCCCCcCCcHHHHHHHHHhcCChHHHHHHHccCCC
Q 016253 88 HANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNEL 167 (392)
Q Consensus 88 ~~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~ 167 (392)
+.|+-++|..|+.+|..+..+. ...+|+++-.++.+.++.+..+ ..+++|+.+.+.+||+|.||++||+|++||
T Consensus 81 ~~Ni~eai~~iv~aM~~l~p~v-----~l~~~~~~~~~dYIls~~~~~~-~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEy 154 (379)
T KOG0099|consen 81 KNNIKEAILTIVGAMSNLVPPV-----ELANPENQFRVDYILSVMNSPD-FDYPPEFYDHVKTLWEDEGVRACYERSNEY 154 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCc-----ccCCcccchhHHHHHhcCCCCc-ccCCHHHHHHHHHHhhhhhHHHHHhccCcc
Confidence 9999999999999999887431 2347788888899988876543 368899999999999999999999999999
Q ss_pred CCCcchHHHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCE
Q 016253 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 247 (392)
Q Consensus 168 ~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~ 247 (392)
+|.|+|.|||+++++|.+++|.|+.+||||||+-|+||.++.| ....++|+++|||||+.+|++|+.||.++++
T Consensus 155 qLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet~F------qVdkv~FhMfDVGGQRDeRrKWIQcFndvtA 228 (379)
T KOG0099|consen 155 QLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVTA 228 (379)
T ss_pred chhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeEEE------eccccceeeeccCCchhhhhhHHHHhcCccE
Confidence 9999999999999999999999999999999999999999999 8888999999999999999999999999999
Q ss_pred EEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCcccccccccccc---C--
Q 016253 248 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP---V-- 322 (392)
Q Consensus 248 iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~---~-- 322 (392)
||||++.|+|++++.||++.|||.|++.+|++++||.|+..+++|||+||+|++.+|+........++||+|.. +
T Consensus 229 iifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~d 308 (379)
T KOG0099|consen 229 IIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPED 308 (379)
T ss_pred EEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999987544333455887631 1
Q ss_pred ---CCC-cccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 323 ---STG-KQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 323 ---~~g-~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
..| ...+-.+.-|++..|.++- .+.....+.+|+|||||+||+||+.||+++.++|.+.||++++|+
T Consensus 309 a~~es~~d~~v~raK~fird~FlRiS---ta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr~hlrqyeLl 379 (379)
T KOG0099|consen 309 ATPESGEDPRVTRAKYFIRDEFLRIS---TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379 (379)
T ss_pred cCCCCCCChhhHHHHHhhhhhHhhhc---cccCCCceecccceeEeechHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 112 1356678888999998863 333334788999999999999999999999999999999999986
No 4
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=2.5e-79 Score=601.45 Aligned_cols=339 Identities=43% Similarity=0.682 Sum_probs=307.9
Q ss_pred HHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016253 28 AQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQ 107 (392)
Q Consensus 28 ~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~~n~~~~~~~li~~~~~l~~ 107 (392)
++|++||++|++++++.++.+|+||||+||||||||+||||++|.+||+++|+..|+.+|+.|++++|+.|+++++.+++
T Consensus 2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i 81 (342)
T smart00275 2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNI 81 (342)
T ss_pred cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cccccccccCCcchHHHHHHHHhccC--CCCCcCCcHHHHHHHHHhcCChHHHHHHHccCCCCCCcchHHHHHhhhhhhc
Q 016253 108 NETDSMKFVVSSENKEIGEKLSEIGG--RLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSD 185 (392)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~ 185 (392)
+.. ++++...+..+.+... ......+++++++.|..||+||+||++|.++++|+|+|++.|||++++||++
T Consensus 82 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~ 154 (342)
T smart00275 82 PFE-------DPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGD 154 (342)
T ss_pred CCC-------ChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhC
Confidence 531 2333344455544321 1111358899999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchh
Q 016253 186 ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 265 (392)
Q Consensus 186 ~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~ 265 (392)
|+|.||.+|++++|.||+|+.+..| ..+++.+++||+|||+++|++|.+||+++++||||+|+|+|||.++|+.
T Consensus 155 ~~y~Pt~~Dil~~r~~T~Gi~~~~f------~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~ 228 (342)
T smart00275 155 PDYVPTEQDILRSRVPTTGIQETAF------IVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228 (342)
T ss_pred CCCCCCHHHhhheeCCccceEEEEE------EECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccC
Confidence 9999999999999999999999999 7888999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhh
Q 016253 266 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF 345 (392)
Q Consensus 266 ~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~ 345 (392)
+.|||.+++.+|+++++++++.++|++||+||.|++.+|++..|++.+ ||+| +|+++++++.+||.++|..+.+
T Consensus 229 ~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~--fp~y----~g~~~~~~~~~yi~~~F~~~~~ 302 (342)
T smart00275 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDY--FPDY----KGPNDYEAAAKFIKQKFLRLNR 302 (342)
T ss_pred cchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhcc--CCCC----CCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999887654 8888 5668999999999999998753
Q ss_pred ccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhhcC
Q 016253 346 QSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAG 390 (392)
Q Consensus 346 ~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~~~ 390 (392)
. ..+|.+|+|+|||+|+++|+.+|++|.++|++++++.+|
T Consensus 303 ~-----~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l~~~~ 342 (342)
T smart00275 303 N-----SSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDAG 342 (342)
T ss_pred C-----CCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 124789999999999999999999999999999998875
No 5
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=7.7e-76 Score=572.34 Aligned_cols=316 Identities=47% Similarity=0.742 Sum_probs=291.8
Q ss_pred cceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcchHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK 127 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 127 (392)
+|+||||+||||||||+||||++|.+||+++|+..|+.+|+.|++++|+.|+++++.++++. .++++...+..
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~-------~~~~~~~~~~~ 73 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPF-------GDPENEKDAKK 73 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999988642 24556666666
Q ss_pred HHhccCCCCCcCCcHHHHHHHHHhcCChHHHHHHHccCCCCCCcchHHHHHhhhhhhcCCCCCCcccceeccceeeeeEE
Q 016253 128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVE 207 (392)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e 207 (392)
+...........+++++++.|..||+||+||++|.++++++|+|++.|||++++||+.++|.||++|++++|.||+|+.+
T Consensus 74 i~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~ 153 (317)
T cd00066 74 ILSFAPELEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVE 153 (317)
T ss_pred HHhccccccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeE
Confidence 66654432234689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 208 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 208 ~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
..| ..+++.+++||+|||+++|++|.+||+++++||||+|+|+||+.++|+...|||.+++.+|+++++++++.
T Consensus 154 ~~f------~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 154 TKF------TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred EEE------EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 999 88889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCC-cccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG-KQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g-~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
++|++||+||+|++++|++.+|++.| ||+| .| +++++++.+||.++|.++.+. .+|.+|+|+|||+|
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~--fp~y----~g~~~~~~~~~~~i~~~F~~~~~~------~~~~~~~~~t~a~D 295 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDY--FPDY----TGPPNDYEEAAKFIRKKFLDLNRN------PNKEIYPHFTCATD 295 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCcccc--CCCC----CCCCCCHHHHHHHHHHHHHHhhcC------CCCeEEEEeccccc
Confidence 99999999999999999999998776 8888 56 589999999999999997532 25789999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhhh
Q 016253 367 PKLVKKTFKLVDETLRRRHLFE 388 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il~~~l~~ 388 (392)
+++|+.+|++|.+.|+++++++
T Consensus 296 t~~i~~vf~~v~~~i~~~~l~~ 317 (317)
T cd00066 296 TENIRFVFDAVKDIILQNNLKD 317 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999863
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=6.2e-75 Score=581.98 Aligned_cols=344 Identities=44% Similarity=0.768 Sum_probs=293.2
Q ss_pred hhHHHHHHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016253 22 ADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101 (392)
Q Consensus 22 ~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~~n~~~~~~~li~~ 101 (392)
+.+++..++++|+++++++++..++.+||||||+||||||||+||||++|.+||+++|+..|+.+|+.|++++|+.|+++
T Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~ 112 (389)
T PF00503_consen 33 EEKEQKKRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEA 112 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCCcchHHHHHHHHhccCCCCCc---------CCcHHHHHHHHHhcCChHHHHHHHccCCCCCCcc
Q 016253 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP---------RLTKELAEDIETLWADPAIQETYAHGNELQLPDC 172 (392)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~ 172 (392)
+..++...........++++......+.......+.. .+++++++.|..||+||+||++|.++++++++|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~ 192 (389)
T PF00503_consen 113 LEELGIPFSFSESSQLNEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDN 192 (389)
T ss_dssp HHHTTCH-SSS-TT--STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TT
T ss_pred HHHcCCCccccccccCCHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhccccccc
Confidence 9998865321111111355666666665544332211 3789999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccc-cccceeEEecCCccccccchhccccccCEEEEE
Q 016253 173 ANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 251 (392)
Q Consensus 173 ~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~-~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv 251 (392)
+.|||++++||++++|.||++|||++|.+|+||.++.| .. ++..++++|||||+++|++|.+||+++++||||
T Consensus 193 ~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f------~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~ 266 (389)
T PF00503_consen 193 AKYFLDNLDRIAQPDYIPTDEDILRCRVKTTGITEIDF------NFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFV 266 (389)
T ss_dssp HHHHHTTHHHHHSTTB---HHHHHHS----SSEEEEEE------EE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEE
T ss_pred HHHHhhhhhhhcCCCccCCCCCeeeecCCCCCeeEEEE------EeecccccceecCCCCchhhhhHHHHhccccEEEEe
Confidence 99999999999999999999999999999999999999 77 889999999999999999999999999999999
Q ss_pred EEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccC-ccccccccccccCCCCc--cc
Q 016253 252 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP-LNVCEWFKDYQPVSTGK--QE 328 (392)
Q Consensus 252 ~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~-l~~~~~f~~y~~~~~g~--~~ 328 (392)
+|||+|||.++|+...|||.+++.+|+++++++++.++|++||+||.|+|++|+...| +.. +||+| .|+ ++
T Consensus 267 vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~--~fp~y----~g~~~~~ 340 (389)
T PF00503_consen 267 VSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSK--YFPDY----TGDRPND 340 (389)
T ss_dssp EEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGG--TSTTG----GSH-TSS
T ss_pred ecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHh--hCCCC----CCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999988 554 48888 576 79
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 329 IENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 329 ~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
++++.+||.++|.++..... ..|.+|+|+|||+|+++|+.+|++|.++|
T Consensus 341 ~~~~~~~i~~~f~~~~~~~~----~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 341 VDSAIKFIKNKFLRLNRNNS----PSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHHHHCTHSTTT----TCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCC----CCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 99999999999998864221 12789999999999999999999999986
No 7
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.5e-23 Score=183.64 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=117.3
Q ss_pred hhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccc
Q 016253 180 LQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259 (392)
Q Consensus 180 ~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~ 259 (392)
+.|++...|.-+. ..|+||+...-+++. +++.++++||||+|||+||++..+||++|||||||||++
T Consensus 26 ~~Rf~~~~f~e~~-------~sTIGVDf~~rt~e~--~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT---- 92 (205)
T KOG0084|consen 26 LLRFKDDTFTESY-------ISTIGVDFKIRTVEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDIT---- 92 (205)
T ss_pred hhhhccCCcchhh-------cceeeeEEEEEEeee--cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcc----
Confidence 4688888888876 899999876554444 788999999999999999999999999999999999995
Q ss_pred cccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHH
Q 016253 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK 339 (392)
Q Consensus 260 ~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~ 339 (392)
+..++.....|+.++-.. ...++|.+|+|||+|+.+.++ ...++|.+|..+.
T Consensus 93 ------~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~---------------------v~~~~a~~fa~~~ 144 (205)
T KOG0084|consen 93 ------KQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRV---------------------VSTEEAQEFADEL 144 (205)
T ss_pred ------cHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhhee---------------------cCHHHHHHHHHhc
Confidence 455666666666666543 345789999999999987654 2345665543221
Q ss_pred HHHHhhccCCCCCCCccee-EEEEEeeCchhHHHHHHHHHHHHHHhh
Q 016253 340 FEELYFQSTAPDRVDRVFK-IYRTTALDPKLVKKTFKLVDETLRRRH 385 (392)
Q Consensus 340 f~~~~~~~~~~~~~~r~~~-~~~TsA~d~~nI~~vF~~v~~~Il~~~ 385 (392)
.+. +++|||++..||..+|..++..|+.++
T Consensus 145 ----------------~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 145 ----------------GIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ----------------CCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 233 789999999999999999999998764
No 8
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-21 Score=172.62 Aligned_cols=149 Identities=17% Similarity=0.244 Sum_probs=120.6
Q ss_pred hhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccc
Q 016253 180 LQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259 (392)
Q Consensus 180 ~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~ 259 (392)
+.|+....|.+.. .||+|.......+.. ....++|.||||||||+|+++-+.||||++++|.|||+
T Consensus 22 V~Rfvk~~F~e~~-------e~TIGaaF~tktv~~--~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDi----- 87 (200)
T KOG0092|consen 22 VLRFVKDQFHENI-------EPTIGAAFLTKTVTV--DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDI----- 87 (200)
T ss_pred hhhhhhCcccccc-------ccccccEEEEEEEEe--CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEec-----
Confidence 5678888888876 789987765544333 45578999999999999999999999999999999998
Q ss_pred cccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHH
Q 016253 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK 339 (392)
Q Consensus 260 ~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~ 339 (392)
++..+|..+..|+.++-..-. +++-|.|+|||+||.+.+- ...++|..|...
T Consensus 88 -----t~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~---------------------V~~~ea~~yAe~- 139 (200)
T KOG0092|consen 88 -----TDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERRE---------------------VEFEEAQAYAES- 139 (200)
T ss_pred -----ccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhccc---------------------ccHHHHHHHHHh-
Confidence 567788899999999876544 7889999999999987432 345677776443
Q ss_pred HHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhh
Q 016253 340 FEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 385 (392)
Q Consensus 340 f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~ 385 (392)
..+.+++|||+++.||+++|.+|.+.|...-
T Consensus 140 ---------------~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 140 ---------------QGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred ---------------cCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 2367889999999999999999999987543
No 9
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.8e-21 Score=170.87 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=116.4
Q ss_pred hhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccc
Q 016253 180 LQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259 (392)
Q Consensus 180 ~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~ 259 (392)
+.|+.+..|.++. ..|+||....-.++. +++.+.+++|||+||++||.+...||+++.+|+.|||++
T Consensus 29 l~rf~d~~f~~~~-------~sTiGIDFk~kti~l--~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDit---- 95 (207)
T KOG0078|consen 29 LLRFSDDSFNTSF-------ISTIGIDFKIKTIEL--DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDIT---- 95 (207)
T ss_pred hhhhhhccCcCCc-------cceEEEEEEEEEEEe--CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEcc----
Confidence 4677888888877 889998765444443 778899999999999999999999999999999999984
Q ss_pred cccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHH
Q 016253 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK 339 (392)
Q Consensus 260 ~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~ 339 (392)
+..+++....|++.|-.+ ....+|++|+|||+|+..+|. ...+.+.++..+
T Consensus 96 ------ne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~---------------------V~~e~ge~lA~e- 146 (207)
T KOG0078|consen 96 ------NEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQ---------------------VSKERGEALARE- 146 (207)
T ss_pred ------chHHHHHHHHHHHHHHhh-CCCCCcEEEeecccccccccc---------------------ccHHHHHHHHHH-
Confidence 556666777766666443 334799999999999977433 223444444332
Q ss_pred HHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHh
Q 016253 340 FEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 340 f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
..+.+++|||+++.||.++|-.+++.|+.+
T Consensus 147 ---------------~G~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 147 ---------------YGIKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred ---------------hCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 237889999999999999999999999854
No 10
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.84 E-value=4.8e-20 Score=157.96 Aligned_cols=136 Identities=22% Similarity=0.355 Sum_probs=107.3
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||.|+.-... ..+.+++++||+|||...|+.|.+||+.++|+|||+|. .+.-||++....+.+
T Consensus 45 ~pt~gf~Iktl------~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDs----------sD~~r~~e~~~~L~~ 108 (185)
T KOG0073|consen 45 SPTLGFQIKTL------EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDS----------SDRMRMQECKQELTE 108 (185)
T ss_pred CCccceeeEEE------EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEEC----------chHHHHHHHHHHHHH
Confidence 45666666666 67888999999999999999999999999999999997 578899999999999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
++.......+|+++++||+|+..+ +.. +.+..+.. ..++. +.+.+..
T Consensus 109 lL~eerlaG~~~Lvlank~dl~~~-l~~-------------------~~i~~~~~-----L~~l~--------ks~~~~l 155 (185)
T KOG0073|consen 109 LLVEERLAGAPLLVLANKQDLPGA-LSL-------------------EEISKALD-----LEELA--------KSHHWRL 155 (185)
T ss_pred HHhhhhhcCCceEEEEecCcCccc-cCH-------------------HHHHHhhC-----HHHhc--------cccCceE
Confidence 999888889999999999999743 110 12222211 11111 2345777
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHHh
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
.-+||.+|+++...|+++.+.+..+
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred EEEeccccccHHHHHHHHHHHHHHH
Confidence 7899999999999999999988764
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.8e-20 Score=165.97 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=122.7
Q ss_pred HhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccc
Q 016253 178 ENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY 257 (392)
Q Consensus 178 ~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~y 257 (392)
+.+.|+..++|.|.. .+|+|+.....++.. +++.++.+||||+||++||.....||+++.|++.|||+
T Consensus 29 nLlsRftrnEF~~~S-------ksTIGvef~t~t~~v--d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDI--- 96 (222)
T KOG0087|consen 29 NLLSRFTRNEFSLES-------KSTIGVEFATRTVNV--DGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI--- 96 (222)
T ss_pred HHHHHhcccccCccc-------ccceeEEEEeeceee--cCcEEEEeeecccchhhhccccchhhcccceeEEEEec---
Confidence 456788889999976 899999877766555 78999999999999999999999999999999999998
Q ss_pred cccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHH
Q 016253 258 DQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 337 (392)
Q Consensus 258 d~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~ 337 (392)
+....++....|+.++..+ ..++++|+|+|||+||-. ++.+| .+++..|..
T Consensus 97 -------Tr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~--lraV~-------------------te~~k~~Ae 147 (222)
T KOG0087|consen 97 -------TRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNH--LRAVP-------------------TEDGKAFAE 147 (222)
T ss_pred -------hhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhh--ccccc-------------------hhhhHhHHH
Confidence 4566666666777777654 446899999999999964 33333 344544422
Q ss_pred HHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhh
Q 016253 338 KKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFE 388 (392)
Q Consensus 338 ~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~ 388 (392)
. ..+++++|||++..||+.+|..+...|.+..-++
T Consensus 148 ~----------------~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 148 K----------------EGLFFLETSALDATNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred h----------------cCceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence 1 2378899999999999999999999998765443
No 12
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-20 Score=165.69 Aligned_cols=125 Identities=22% Similarity=0.417 Sum_probs=112.6
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
+||+|.+...+ ..++++|++||+|||++.|+.|.+||++.+++|||+|. .++.|+.++.+.+..
T Consensus 46 vPTiGfnVE~v------~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS----------~Dr~Ri~eak~eL~~ 109 (181)
T KOG0070|consen 46 VPTIGFNVETV------EYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDS----------SDRERIEEAKEELHR 109 (181)
T ss_pred CCccccceeEE------EEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeC----------CcHHHHHHHHHHHHH
Confidence 79999998888 78899999999999999999999999999999999995 689999999999999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccc--------cccccCccccccccccccCCCCcccHHHHHHHHHHHHH
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEK--------KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE 341 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~--------kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~ 341 (392)
+++++.+.++|+++++||+|+.++ ++....+....|+.+-+++.+| .++.++.+|+.+...
T Consensus 110 ~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G-~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 110 MLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISG-EGLYEGLDWLSNNLK 178 (181)
T ss_pred HHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccc-ccHHHHHHHHHHHHh
Confidence 999998999999999999999754 3334456678999999999999 899999999987653
No 13
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.7e-20 Score=163.99 Aligned_cols=136 Identities=19% Similarity=0.180 Sum_probs=107.0
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.+|+||+.....+.. ....+.|++|||+|||+||++.+.|+|++.++|.|||+ ++.++++...+|++.
T Consensus 52 qATIGiDFlskt~~l--~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDi----------t~~~Sfe~t~kWi~d 119 (221)
T KOG0094|consen 52 QATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDI----------TDRNSFENTSKWIED 119 (221)
T ss_pred cceeeeEEEEEEEEE--cCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEec----------cccchHHHHHHHHHH
Confidence 566777765443332 66789999999999999999999999999999999998 588999999999999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+.+.....++-|+|||||.||.+++. ...+++-. +-. .....+
T Consensus 120 v~~e~gs~~viI~LVGnKtDL~dkrq---------------------vs~eEg~~----kAk------------el~a~f 162 (221)
T KOG0094|consen 120 VRRERGSDDVIIFLVGNKTDLSDKRQ---------------------VSIEEGER----KAK------------ELNAEF 162 (221)
T ss_pred HHhccCCCceEEEEEcccccccchhh---------------------hhHHHHHH----HHH------------HhCcEE
Confidence 99887776789999999999987532 11222221 111 122566
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHHh
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
.+|||+.|.||+.+|..|+..+...
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhccCc
Confidence 7899999999999999988877643
No 14
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.2e-20 Score=155.98 Aligned_cols=123 Identities=16% Similarity=0.374 Sum_probs=109.6
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|++...+ ..++++|.+||+|||.+.|+.|.|||.+.+++|||+|. .+.+|++++.+.+.+
T Consensus 46 ipTvGFnvetV------tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Ds----------a~~dr~eeAr~ELh~ 109 (180)
T KOG0071|consen 46 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS----------ADRDRIEEARNELHR 109 (180)
T ss_pred ccccceeEEEE------EeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEec----------cchhhHHHHHHHHHH
Confidence 78899988877 78899999999999999999999999999999999995 567999999999999
Q ss_pred HHcCCCCCCceEEEEeeCCCCcccc--------ccccCccccccccccccCCCCcccHHHHHHHHHHH
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKK--------VLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK 339 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~k--------l~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~ 339 (392)
+++++...++|+++++||+|+..+. +.-.++++..|..+-+++.+| .+..+++.|+.+.
T Consensus 110 ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~g-dgL~eglswlsnn 176 (180)
T KOG0071|consen 110 IINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSG-DGLKEGLSWLSNN 176 (180)
T ss_pred HhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccc-hhHHHHHHHHHhh
Confidence 9999999999999999999998763 223457788899998888888 7899999998764
No 15
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.82 E-value=3.4e-19 Score=156.62 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=89.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+||+.++.+|..|+++++++|+|+|++ +..++.+..+|+..+.+.....+.|++|++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 45 DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIT----------AQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 445678999999999999999999999999999999984 4455666677777777654456899999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++. +++ .+.+++|||+++.||+++|.+
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~-~~~---------------~~~~~~~Sa~~~~~v~~~~~~ 157 (164)
T cd04175 115 KCDLEDERV---------------------VGKEQGQNLA-RQW---------------GCAFLETSAKAKINVNEIFYD 157 (164)
T ss_pred CCcchhccE---------------------EcHHHHHHHH-HHh---------------CCEEEEeeCCCCCCHHHHHHH
Confidence 999865321 1122232322 111 145678999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 158 l~~~l 162 (164)
T cd04175 158 LVRQI 162 (164)
T ss_pred HHHHh
Confidence 98765
No 16
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.82 E-value=5.5e-19 Score=155.82 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=89.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+++++||++|++.++..|..||++++++|+|+|++ +..++.....|+..+.+.. ..++|++|++|
T Consensus 47 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~n 115 (166)
T cd04122 47 NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDARNLT-NPNTVIFLIGN 115 (166)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 455678999999999999999999999999999999985 4455666666666654432 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.++... ..+.++++||++++||+++|..
T Consensus 116 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 116 KADLEAQRD---------------------VTYEEAKQFADE----------------NGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred CcccccccC---------------------cCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999965421 123344444321 1256778999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+...+++
T Consensus 159 l~~~~~~ 165 (166)
T cd04122 159 TAKKIYQ 165 (166)
T ss_pred HHHHHhh
Confidence 9988764
No 17
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.6e-19 Score=157.86 Aligned_cols=145 Identities=18% Similarity=0.258 Sum_probs=114.3
Q ss_pred hhhhhcCCCCCCcccceeccceeeeeE----EEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcc
Q 016253 180 LQRLSDANYVPTKDDVLYARVRTTGVV----EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 255 (392)
Q Consensus 180 ~~ri~~~~y~PT~~Dil~~r~~T~Gi~----e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls 255 (392)
+.|+++..|+|-- ..|+|+. .+.+ +.++++++||||+||++||+....||+++.++|+|||+
T Consensus 23 llrf~~krF~~~h-------d~TiGvefg~r~~~i------d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydi- 88 (216)
T KOG0098|consen 23 LLRFTDKRFQPVH-------DLTIGVEFGARMVTI------DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDI- 88 (216)
T ss_pred HHHHhccCccccc-------cceeeeeeceeEEEE------cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEc-
Confidence 4567777777754 4677764 4555 88999999999999999999999999999999999998
Q ss_pred cccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHH
Q 016253 256 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 335 (392)
Q Consensus 256 ~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~ 335 (392)
+.+.++...-.|+..+..+. ..|..|+|++||+||...+- .+-+++-.|
T Consensus 89 ---------t~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~---------------------Vs~EEGeaF 137 (216)
T KOG0098|consen 89 ---------TRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARRE---------------------VSKEEGEAF 137 (216)
T ss_pred ---------cchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcccc---------------------ccHHHHHHH
Confidence 45566666666777776542 46899999999999975431 345677777
Q ss_pred HHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhh
Q 016253 336 VKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 385 (392)
Q Consensus 336 i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~ 385 (392)
.+++ .+.+.+|||++++||+++|......|++..
T Consensus 138 A~eh----------------gLifmETSakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 138 AREH----------------GLIFMETSAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred HHHc----------------CceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6542 355669999999999999999999998654
No 18
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.81 E-value=1.8e-19 Score=151.85 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=112.7
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+|++..--++.. ++..++++|||++|||+||.+...||++.++++.|||+ ++.+++.....|+++
T Consensus 38 itTiGvDfkirTv~i--~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDV----------Tn~ESF~Nv~rWLee 105 (198)
T KOG0079|consen 38 ITTIGVDFKIRTVDI--NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TNGESFNNVKRWLEE 105 (198)
T ss_pred EEEeeeeEEEEEeec--CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEEC----------cchhhhHhHHHHHHH
Confidence 667776543322222 78889999999999999999999999999999999998 577888889999999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+-++. ..+|-+|++||.|..+.|+ .+.++|..|...+ .+.+
T Consensus 106 i~~nc--dsv~~vLVGNK~d~~~Rrv---------------------V~t~dAr~~A~~m----------------gie~ 146 (198)
T KOG0079|consen 106 IRNNC--DSVPKVLVGNKNDDPERRV---------------------VDTEDARAFALQM----------------GIEL 146 (198)
T ss_pred HHhcC--ccccceecccCCCCcccee---------------------eehHHHHHHHHhc----------------Cchh
Confidence 97763 3789999999999988765 3456777776543 2567
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHHhhhh
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRRRHLF 387 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~~~l~ 387 (392)
|+|||++.+|++..|..+.+.+++..++
T Consensus 147 FETSaKe~~NvE~mF~cit~qvl~~k~r 174 (198)
T KOG0079|consen 147 FETSAKENENVEAMFHCITKQVLQAKLR 174 (198)
T ss_pred eehhhhhcccchHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999887654
No 19
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=1.8e-19 Score=162.09 Aligned_cols=135 Identities=19% Similarity=0.333 Sum_probs=102.7
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|++...+ +.+++.+++||++||++++.+|.+||++++++|||+|++ +..++.++..++..
T Consensus 46 ~pt~g~~~~~~------~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s----------~~~s~~~~~~~l~~ 109 (181)
T PLN00223 46 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHR 109 (181)
T ss_pred cCCcceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence 45666665555 566789999999999999999999999999999999985 44567788888888
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+++.+...++|++|++||+|+..+. ..++..+.+ .+. ...+|.+++
T Consensus 110 ~l~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~l-----~l~------~~~~~~~~~ 155 (181)
T PLN00223 110 MLNEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITDKL-----GLH------SLRQRHWYI 155 (181)
T ss_pred HhcCHhhCCCCEEEEEECCCCCCCC-----------------------CHHHHHHHh-----Ccc------ccCCCceEE
Confidence 8887667789999999999986431 111111111 110 002456777
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHHh
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
+.|||++|+||.++|+.+.+.+.++
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhhc
Confidence 7899999999999999999888654
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=1.5e-19 Score=154.34 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=111.0
Q ss_pred hhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccc
Q 016253 180 LQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259 (392)
Q Consensus 180 ~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~ 259 (392)
+.|+.++.|.|.. ..|+|++.-.-.+.. +++.+++.||||+|||+||.+.+.||+++.+||.|||++.=
T Consensus 28 llrFv~~~fd~~~-------~~tIGvDFkvk~m~v--dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~R-- 96 (209)
T KOG0080|consen 28 LLRFVSNTFDDLH-------PTTIGVDFKVKVMQV--DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSR-- 96 (209)
T ss_pred HHHHHhcccCccC-------CceeeeeEEEEEEEE--cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccch--
Confidence 4466667777754 456887643222222 78899999999999999999999999999999999999531
Q ss_pred cccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHH
Q 016253 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK 339 (392)
Q Consensus 260 ~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~ 339 (392)
.+...|+.|++.++..+.+ +++..+||+||+|-..++. .+-+++++|.++
T Consensus 97 -----dtf~kLd~W~~Eld~Ystn---~diikmlVgNKiDkes~R~---------------------V~reEG~kfAr~- 146 (209)
T KOG0080|consen 97 -----DTFVKLDIWLKELDLYSTN---PDIIKMLVGNKIDKESERV---------------------VDREEGLKFARK- 146 (209)
T ss_pred -----hhHHhHHHHHHHHHhhcCC---ccHhHhhhcccccchhccc---------------------ccHHHHHHHHHh-
Confidence 2233455555555555554 4678899999999654433 456788887543
Q ss_pred HHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHH
Q 016253 340 FEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 340 f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
+...++++||++.+||..+|+.+++.|++
T Consensus 147 ---------------h~~LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 147 ---------------HRCLFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred ---------------hCcEEEEcchhhhccHHHHHHHHHHHHhc
Confidence 24667899999999999999999999974
No 21
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.7e-19 Score=148.69 Aligned_cols=151 Identities=18% Similarity=0.227 Sum_probs=110.2
Q ss_pred hhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEccccccc
Q 016253 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 260 (392)
Q Consensus 181 ~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~ 260 (392)
-|++...|.|-- ..|+||..-.-++-. ..+.+++++|||+|||++|.+...||+++.++|+++|++.
T Consensus 39 ~ry~ddSFt~af-------vsTvGidFKvKTvyr--~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN---- 105 (193)
T KOG0093|consen 39 FRYADDSFTSAF-------VSTVGIDFKVKTVYR--SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN---- 105 (193)
T ss_pred HHhhccccccce-------eeeeeeeEEEeEeee--cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC----
Confidence 467778888844 889998743221111 4577999999999999999999999999999999999852
Q ss_pred ccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHH
Q 016253 261 LFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF 340 (392)
Q Consensus 261 l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f 340 (392)
+++.|. ++-|-..+......++|+||++||||+..|++. .-+.+..++.+.
T Consensus 106 ---eeSf~s----vqdw~tqIktysw~naqvilvgnKCDmd~eRvi---------------------s~e~g~~l~~~L- 156 (193)
T KOG0093|consen 106 ---EESFNS----VQDWITQIKTYSWDNAQVILVGNKCDMDSERVI---------------------SHERGRQLADQL- 156 (193)
T ss_pred ---HHHHHH----HHHHHHHheeeeccCceEEEEecccCCccceee---------------------eHHHHHHHHHHh-
Confidence 233333 344444444444468999999999999988762 224444443322
Q ss_pred HHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhh
Q 016253 341 EELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFE 388 (392)
Q Consensus 341 ~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~ 388 (392)
.+-+|+|||+++.||+.+|+.+.+.|-+..-.+
T Consensus 157 ---------------GfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 157 ---------------GFEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred ---------------ChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 245678999999999999999999997665443
No 22
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.2e-19 Score=151.04 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=100.2
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.-|+|+..-.-.+.. .++.++++||||+||++||+....||+++.+.++|+|++ +++++.+.-.|+..
T Consensus 39 sHTiGveFgSrIinV--GgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~T----------srdsfnaLtnWL~D 106 (214)
T KOG0086|consen 39 SHTIGVEFGSRIVNV--GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT----------SRDSFNALTNWLTD 106 (214)
T ss_pred cceeeeeecceeeee--cCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEecc----------chhhHHHHHHHHHH
Confidence 456666543221222 678899999999999999999999999999999999985 44444444444444
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+-. -..+++.++|++||.||.+++- ....+|..|.. ...+.+
T Consensus 107 aR~-lAs~nIvviL~GnKkDL~~~R~---------------------VtflEAs~Faq----------------Enel~f 148 (214)
T KOG0086|consen 107 ART-LASPNIVVILCGNKKDLDPERE---------------------VTFLEASRFAQ----------------ENELMF 148 (214)
T ss_pred HHh-hCCCcEEEEEeCChhhcChhhh---------------------hhHHHHHhhhc----------------ccceee
Confidence 322 2345789999999999976643 34556666532 234778
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHHh
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
|+|||.+|+||++.|-.+..+|+.+
T Consensus 149 lETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred eeecccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 23
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.79 E-value=1e-18 Score=160.11 Aligned_cols=121 Identities=13% Similarity=0.198 Sum_probs=89.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+++.+++++|||+||++++.+|..||++++++|+|||++ +..++++...|+..+ +.....++|++|++|
T Consensus 45 ~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvt----------d~~Sf~~l~~w~~~i-~~~~~~~~piilVgN 113 (202)
T cd04120 45 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT----------KKETFDDLPKWMKMI-DKYASEDAELLLVGN 113 (202)
T ss_pred CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHH-HHhCCCCCcEEEEEE
Confidence 556789999999999999999999999999999999984 455666665555543 333345799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+|..+ -..+.+++|||+++.||+++|..
T Consensus 114 K~DL~~~~~---------------------v~~~~~~~~a~~---------------~~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 114 KLDCETDRE---------------------ISRQQGEKFAQQ---------------ITGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred Ccccccccc---------------------cCHHHHHHHHHh---------------cCCCEEEEecCCCCCCHHHHHHH
Confidence 999864321 112333333211 01245779999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+++.
T Consensus 158 l~~~~~~~ 165 (202)
T cd04120 158 LVDDILKK 165 (202)
T ss_pred HHHHHHHh
Confidence 99988754
No 24
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.79 E-value=2.8e-18 Score=153.08 Aligned_cols=119 Identities=16% Similarity=0.222 Sum_probs=89.9
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
..+.+++|||+||+.++..|..|+++++++|+|+|++ +..++.+...|+..+.......++|++|++||+
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 61 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLT----------NEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred CEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCc
Confidence 4568999999999999999999999999999999984 445566666677666554444578999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.+++. ...+++.+|... ..+.+++|||+++.||+++|+.+.
T Consensus 131 Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 131 DLEDQRQ---------------------VSEEQAKALADK----------------YGIPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred cchhcCc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9865321 122334343221 124578999999999999999999
Q ss_pred HHHHHh
Q 016253 379 ETLRRR 384 (392)
Q Consensus 379 ~~Il~~ 384 (392)
+.++++
T Consensus 174 ~~~~~~ 179 (180)
T cd04127 174 DLVMKR 179 (180)
T ss_pred HHHHhh
Confidence 888753
No 25
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.6e-19 Score=148.60 Aligned_cols=149 Identities=20% Similarity=0.191 Sum_probs=112.6
Q ss_pred hhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccc
Q 016253 180 LQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259 (392)
Q Consensus 180 ~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~ 259 (392)
+.|+.+.-|.|-. ..|+|+..+--+++. ++..++++||||+||++||++..+||+.++++|+|+|+|.
T Consensus 24 vrrftqglfppgq-------gatigvdfmiktvev--~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc--- 91 (213)
T KOG0095|consen 24 VRRFTQGLFPPGQ-------GATIGVDFMIKTVEV--NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC--- 91 (213)
T ss_pred hhhhhccCCCCCC-------CceeeeeEEEEEEEE--CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc---
Confidence 4567777788876 789998765544444 7889999999999999999999999999999999999973
Q ss_pred cccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHH
Q 016253 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK 339 (392)
Q Consensus 260 ~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~ 339 (392)
.++...+.+|+...++..|+ ++--||++||.|+-+++. +|- .-+.+|
T Consensus 92 ----qpsfdclpewlreie~yan~----kvlkilvgnk~d~~drre--vp~-------------------qigeef---- 138 (213)
T KOG0095|consen 92 ----QPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADRRE--VPQ-------------------QIGEEF---- 138 (213)
T ss_pred ----CcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhhhh--hhH-------------------HHHHHH----
Confidence 35566777777777777665 466799999999876532 111 111222
Q ss_pred HHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhh
Q 016253 340 FEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 385 (392)
Q Consensus 340 f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~ 385 (392)
.+. +..|+.+|||++.+||+.+|..++..++...
T Consensus 139 -s~~-----------qdmyfletsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 139 -SEA-----------QDMYFLETSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred -HHh-----------hhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 211 1256678999999999999999988887543
No 26
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.79 E-value=4.8e-18 Score=149.80 Aligned_cols=118 Identities=15% Similarity=0.264 Sum_probs=87.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+++||++|++.++..|..+++++++++||+|++ +.+++.+...|+..+... ...++|+++++|
T Consensus 46 ~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~piivv~n 114 (165)
T cd01865 46 NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT----------NEESFNAVQDWSTQIKTY-SWDNAQVILVGN 114 (165)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCCEEEEEE
Confidence 344578999999999999999999999999999999984 345666666666666432 234689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.++.. . ..+.+++|||+++.||.++|+.
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 115 KCDMEDERV---------------------VSSERGRQLAD-Q---------------LGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred CcccCcccc---------------------cCHHHHHHHHH-H---------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999965421 11233333211 1 1145788999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 158 l~~~~~ 163 (165)
T cd01865 158 LVDIIC 163 (165)
T ss_pred HHHHHH
Confidence 988764
No 27
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=5.5e-18 Score=154.58 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=92.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+.+||++||+.++.+|..|+++++++|+|+|++ +.+++.+...|+..+.+. ...+|++|++|
T Consensus 51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~piivVgN 118 (199)
T cd04110 51 NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------NGESFVNVKRWLQEIEQN--CDDVCKVLVGN 118 (199)
T ss_pred CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 445578999999999999999999999999999999984 445666677777776553 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+...+. ...+++..+... ..+.++.|||+++.||.++|+.
T Consensus 119 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 119 KNDDPERKV---------------------VETEDAYKFAGQ----------------MGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEECCCCcCHHHHHHH
Confidence 999864311 122333333221 1255789999999999999999
Q ss_pred HHHHHHHhhhh
Q 016253 377 VDETLRRRHLF 387 (392)
Q Consensus 377 v~~~Il~~~l~ 387 (392)
+...++.....
T Consensus 162 l~~~~~~~~~~ 172 (199)
T cd04110 162 ITELVLRAKKD 172 (199)
T ss_pred HHHHHHHhhhc
Confidence 99999865443
No 28
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.78 E-value=2e-18 Score=154.55 Aligned_cols=133 Identities=22% Similarity=0.380 Sum_probs=108.3
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|++...+ ..+++.+.+||+|||+++|+.|.+||++++++|||+|. .+.+++.++.+.+..
T Consensus 43 ~pT~g~~~~~i------~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs----------sd~~~l~e~~~~L~~ 106 (175)
T PF00025_consen 43 IPTIGFNIEEI------KYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDS----------SDPERLQEAKEELKE 106 (175)
T ss_dssp EEESSEEEEEE------EETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEET----------TGGGGHHHHHHHHHH
T ss_pred Cccccccccee------eeCcEEEEEEeccccccccccceeeccccceeEEEEec----------ccceeecccccchhh
Confidence 78889998888 77889999999999999999999999999999999996 466789999999999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+++++...++|+++++||+|+.+. .+.++..+++.-. .+ . .++.+.+
T Consensus 107 ll~~~~~~~~piLIl~NK~D~~~~-----------------------~~~~~i~~~l~l~--~l-----~---~~~~~~v 153 (175)
T PF00025_consen 107 LLNDPELKDIPILILANKQDLPDA-----------------------MSEEEIKEYLGLE--KL-----K---NKRPWSV 153 (175)
T ss_dssp HHTSGGGTTSEEEEEEESTTSTTS-----------------------STHHHHHHHTTGG--GT-----T---SSSCEEE
T ss_pred hcchhhcccceEEEEeccccccCc-----------------------chhhHHHhhhhhh--hc-----c---cCCceEE
Confidence 999988889999999999998643 1112222211100 01 0 2467888
Q ss_pred EEEEeeCchhHHHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~I 381 (392)
+.+||.+|+++.+.|+++.+.|
T Consensus 154 ~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 154 FSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHhcC
Confidence 9999999999999999998875
No 29
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=1.9e-18 Score=153.70 Aligned_cols=116 Identities=20% Similarity=0.309 Sum_probs=86.8
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
++.+++|||+||+.++..|..||+++++++||+|.+ +..++.+...++..+++.....++|+++++||+|
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 126 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSS----------DRLRLDDCKRELKELLQEERLAGATLLILANKQD 126 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcc
Confidence 467899999999999999999999999999999974 4456777777888887655556899999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.+.. ..++..+++.. . .. ..+.+.+++|||++++||+++|+++.+
T Consensus 127 l~~~~-----------------------~~~~~~~~~~~-----~---~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 127 LPGAL-----------------------SEEEIREALEL-----D---KI---SSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cccCC-----------------------CHHHHHHHhCc-----c---cc---CCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 86431 11222222110 0 00 123467889999999999999998764
No 30
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.78 E-value=4.4e-18 Score=153.90 Aligned_cols=133 Identities=12% Similarity=0.158 Sum_probs=90.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++||++||+.++.+|..||++++++|+|+|++ +.+++.... .|+..+... ..++|++|++
T Consensus 44 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~----------~~~sf~~~~~~~~~~i~~~--~~~~piilvg 111 (189)
T cd04134 44 DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVD----------SPDSLENVESKWLGEIREH--CPGVKLVLVA 111 (189)
T ss_pred CCEEEEEEEEECCCChhccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 445578999999999999999999999999999999985 444554443 345555432 2478999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++........ .... ....+++.++..+ .+.+.+++|||+++.||+++|.
T Consensus 112 NK~Dl~~~~~~~~~~~~---~~~~------~v~~~~~~~~~~~---------------~~~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 112 LKCDLREARNERDDLQR---YGKH------TISYEEGLAVAKR---------------INALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred EChhhccChhhHHHHhh---ccCC------CCCHHHHHHHHHH---------------cCCCEEEEccCCcCCCHHHHHH
Confidence 99999764321100000 0000 0234455544221 1125678999999999999999
Q ss_pred HHHHHHHHhh
Q 016253 376 LVDETLRRRH 385 (392)
Q Consensus 376 ~v~~~Il~~~ 385 (392)
.+.+.++...
T Consensus 168 ~l~~~~~~~~ 177 (189)
T cd04134 168 EAARVALNVR 177 (189)
T ss_pred HHHHHHhccc
Confidence 9999988544
No 31
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.77 E-value=9.5e-18 Score=146.89 Aligned_cols=119 Identities=12% Similarity=0.235 Sum_probs=85.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC----CCCceEE
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC----FEKTSFM 292 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~----~~~~~ii 292 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|+++ .+++.+...|+..+..... ..+.|++
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~pii 114 (168)
T cd04119 45 RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD----------RQSFEALDSWLKEMKQEGGPHGNMENIVVV 114 (168)
T ss_pred CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhccccccCCCceEE
Confidence 4556789999999999999999999999999999999853 3344444445544433211 2468999
Q ss_pred EEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHH
Q 016253 293 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 372 (392)
Q Consensus 293 L~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~ 372 (392)
+++||+|+.+++. .+.+++..+... ..+.+++|||+++.||.+
T Consensus 115 lv~nK~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 115 VCANKIDLTKHRA---------------------VSEDEGRLWAES----------------KGFKYFETSACTGEGVNE 157 (168)
T ss_pred EEEEchhcccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEECCCCCCHHH
Confidence 9999999864211 123334343221 124578999999999999
Q ss_pred HHHHHHHHHH
Q 016253 373 TFKLVDETLR 382 (392)
Q Consensus 373 vF~~v~~~Il 382 (392)
+|+.+.+.++
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 32
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.77 E-value=7.2e-18 Score=147.87 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=85.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+++|||+|+++++.+|..|+++++++|+|+|++ +.+++.+...|+..+.+.....+.|++|++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piviv~n 114 (163)
T cd04176 45 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLV----------NQQTFQDIKPMRDQIVRVKGYEKVPIILVGN 114 (163)
T ss_pred CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 445568999999999999999999999999999999984 4455666666666666543345799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ....++..+. .. ..+.+++|||+++.||+++|..
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~-~~---------------~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 115 KVDLESERE---------------------VSSAEGRALA-EE---------------WGCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred CccchhcCc---------------------cCHHHHHHHH-HH---------------hCCEEEEecCCCCCCHHHHHHH
Confidence 999854211 1122232221 11 1145678999999999999998
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 158 l~~~ 161 (163)
T cd04176 158 IVRQ 161 (163)
T ss_pred HHHh
Confidence 8764
No 33
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.77 E-value=4e-18 Score=154.54 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=94.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+||++++.+|..||++++++|+|+|+ ++.+++.+...|+..+... ..++|++|+||
T Consensus 51 ~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~----------t~~~Sf~~~~~w~~~i~~~--~~~~piilVGN 118 (189)
T cd04121 51 DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDI----------TNRWSFDGIDRWIKEIDEH--APGVPKILVGN 118 (189)
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 55668999999999999999999999999999999998 4667777777777777543 35799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+...+. ...+++.+|... +.+.+++|||+++.||+++|+.
T Consensus 119 K~DL~~~~~---------------------v~~~~~~~~a~~----------------~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 119 RLHLAFKRQ---------------------VATEQAQAYAER----------------NGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred CccchhccC---------------------CCHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence 999964321 224455555421 1256789999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.++.+
T Consensus 162 l~~~i~~~ 169 (189)
T cd04121 162 LARIVLMR 169 (189)
T ss_pred HHHHHHHh
Confidence 99988754
No 34
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.77 E-value=1.4e-17 Score=146.51 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=88.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+++||++|++.++..|..|+++++++|+|+|++ +.+++.+...|+..+.... ..+.|+++++|
T Consensus 47 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~n 115 (166)
T cd01869 47 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLQEIDRYA-SENVNKLLVGN 115 (166)
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECc----------CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 344568999999999999999999999999999999985 3456666666666664322 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+.+. ...+++..+... ..+.++++||+++.||.++|..
T Consensus 116 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 116 KCDLTDKRV---------------------VDYSEAQEFADE----------------LGIPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred ChhcccccC---------------------CCHHHHHHHHHH----------------cCCeEEEEECCCCcCHHHHHHH
Confidence 999864321 123344443221 1245788999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+.+
T Consensus 159 i~~~~~~ 165 (166)
T cd01869 159 MAREIKK 165 (166)
T ss_pred HHHHHHh
Confidence 9988753
No 35
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.77 E-value=2e-17 Score=146.10 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=88.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.+...|..++++++++|||+|++ +..++.+..+|+..+... ...++|+++++|
T Consensus 48 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~n 116 (167)
T cd01867 48 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT----------DEKSFENIRNWMRNIEEH-ASEDVERMLVGN 116 (167)
T ss_pred CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHhHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 445578999999999999999999999999999999984 344555556666666543 235789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+.+. ...+++.++... ..+.++++||+++.||+++|..
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 117 KCDMEEKRV---------------------VSKEEGEALADE----------------YGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred CcccccccC---------------------CCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999975311 122333333221 1245689999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+++
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998865
No 36
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=2.3e-17 Score=148.71 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=88.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..++++++++|||+|++ +...+.+...|+..+.... ..++|++|++|
T Consensus 45 ~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~n 113 (188)
T cd04125 45 ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVT----------DQESFENLKFWINEINRYA-RENVIKVIVAN 113 (188)
T ss_pred CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 445678999999999999999999999999999999985 3445555555655554322 23589999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+.+. .+.+++..|... ..+.++++||+++.||+++|..
T Consensus 114 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 114 KSDLVNNKV---------------------VDSNIAKSFCDS----------------LNIPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred CCCCccccc---------------------CCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999874321 122333333211 1245789999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.++++
T Consensus 157 l~~~~~~~ 164 (188)
T cd04125 157 LVKLIIKR 164 (188)
T ss_pred HHHHHHHH
Confidence 99988753
No 37
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.76 E-value=4.4e-18 Score=149.69 Aligned_cols=121 Identities=22% Similarity=0.403 Sum_probs=90.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
...+..+.+|||+||+.++..|..+|+++++++||+|.+ +.+++.+...++..+.+.....++|++|++|
T Consensus 46 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 46 EVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDST----------DRERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECc----------hHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 334678999999999999999999999999999999974 3346777788888888776667899999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+ . ..++..+++....... ....+.++.+||++++||+++|++
T Consensus 116 K~D~~~~-~----------------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~~g~gv~e~~~~ 163 (167)
T cd04160 116 KQDLPDA-L----------------------SVEEIKEVFQDKAEEI---------GRRDCLVLPVSALEGTGVREGIEW 163 (167)
T ss_pred ccccccC-C----------------------CHHHHHHHhccccccc---------cCCceEEEEeeCCCCcCHHHHHHH
Confidence 9998542 1 1122223222211111 123467889999999999999998
Q ss_pred HHH
Q 016253 377 VDE 379 (392)
Q Consensus 377 v~~ 379 (392)
+.+
T Consensus 164 l~~ 166 (167)
T cd04160 164 LVE 166 (167)
T ss_pred Hhc
Confidence 764
No 38
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.76 E-value=2.1e-17 Score=144.87 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=87.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+||+.++..|..++++++++++|+|++ +.+.+.+...|+..+.+.....++|+++++|
T Consensus 44 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~pii~v~n 113 (164)
T smart00173 44 DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSIT----------DRQSFEEIKKFREQILRVKDRDDVPIVLVGN 113 (164)
T ss_pred CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 445578999999999999999999999999999999984 3455666666666665544445789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... ..+.++.+||+++.||+++|+.
T Consensus 114 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 114 KCDLESERV---------------------VSTEEGKELARQ----------------WGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred Cccccccce---------------------EcHHHHHHHHHH----------------cCCEEEEeecCCCCCHHHHHHH
Confidence 999864321 112333333211 1145688999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 157 l~~~~~ 162 (164)
T smart00173 157 LVREIR 162 (164)
T ss_pred HHHHHh
Confidence 987664
No 39
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.76 E-value=1.8e-17 Score=146.40 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=83.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC---CCCCCceEEE
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFML 293 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~---~~~~~~~iiL 293 (392)
+.+.+.+++||++||++++.+|..||++++++|+|+|++ +.+++.....|...+... ....++|++|
T Consensus 50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 119 (170)
T cd04116 50 DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVD----------DSQSFQNLSNWKKEFIYYADVKEPESFPFVV 119 (170)
T ss_pred CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhcccccCCCCcEEE
Confidence 556678999999999999999999999999999999984 333344444444444332 2235789999
Q ss_pred EeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHH
Q 016253 294 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 373 (392)
Q Consensus 294 ~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~v 373 (392)
++||+|+.+.. ...+++.+|..+ + ....+++|||+++.||.++
T Consensus 120 v~nK~Dl~~~~----------------------~~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 120 LGNKNDIPERQ----------------------VSTEEAQAWCRE-N--------------GDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEECccccccc----------------------cCHHHHHHHHHH-C--------------CCCeEEEEECCCCCCHHHH
Confidence 99999986221 123344444321 0 1235689999999999999
Q ss_pred HHHHHHH
Q 016253 374 FKLVDET 380 (392)
Q Consensus 374 F~~v~~~ 380 (392)
|+.+.+.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9988754
No 40
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.76 E-value=1.7e-17 Score=147.16 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=85.9
Q ss_pred cccccceeEEecCCccccc-cchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r-~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++||++|++.++ ..|.+|+++++++|+|+|++ +..++.....|+..+.......++|+++++
T Consensus 47 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 116 (170)
T cd04115 47 DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVT----------NMASFHSLPSWIEECEQHSLPNEVPRILVG 116 (170)
T ss_pred CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4455789999999999987 58999999999999999984 445555666666666554444679999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC---chhHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD---PKLVKK 372 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d---~~nI~~ 372 (392)
||+|+.+.+. ...+.+.++.. ...+.+++|||++ +.||++
T Consensus 117 nK~Dl~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 117 NKCDLREQIQ---------------------VPTDLAQRFAD----------------AHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred ECccchhhcC---------------------CCHHHHHHHHH----------------HcCCcEEEEeccCCcCCCCHHH
Confidence 9999865321 11223333321 1125578999999 999999
Q ss_pred HHHHHHHHH
Q 016253 373 TFKLVDETL 381 (392)
Q Consensus 373 vF~~v~~~I 381 (392)
+|..+...+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 999988755
No 41
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.76 E-value=2.4e-18 Score=152.83 Aligned_cols=129 Identities=18% Similarity=0.327 Sum_probs=95.7
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
||+|+....+ ....+.+++|||+|+++++..|..||++++++|||+|++ +..++.++..++.++
T Consensus 39 ~t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t----------~~~s~~~~~~~~~~~ 102 (168)
T cd04149 39 PTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA----------DRDRIDEARQELHRI 102 (168)
T ss_pred CCcccceEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC----------chhhHHHHHHHHHHH
Confidence 4445444444 455689999999999999999999999999999999985 445678888899999
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
+++....++|++|++||+|+.+. + ..+++.+++.-. .. ..+.+.++
T Consensus 103 ~~~~~~~~~piilv~NK~Dl~~~-~----------------------~~~~i~~~~~~~--~~---------~~~~~~~~ 148 (168)
T cd04149 103 INDREMRDALLLVFANKQDLPDA-M----------------------KPHEIQEKLGLT--RI---------RDRNWYVQ 148 (168)
T ss_pred hcCHhhcCCcEEEEEECcCCccC-C----------------------CHHHHHHHcCCC--cc---------CCCcEEEE
Confidence 87765668999999999998542 1 122333322100 00 12446778
Q ss_pred EEEeeCchhHHHHHHHHHH
Q 016253 361 RTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 361 ~TsA~d~~nI~~vF~~v~~ 379 (392)
+|||++++||+++|+.+.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999998754
No 42
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.76 E-value=4.4e-18 Score=152.00 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=96.9
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
||+|+....+ ..+.+.+++|||+||++++.+|.+||++++++|||+|++ +..++.++.+++..+
T Consensus 43 ~t~~~~~~~~------~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t----------~~~s~~~~~~~l~~~ 106 (175)
T smart00177 43 PTIGFNVETV------TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSN----------DRDRIDEAREELHRM 106 (175)
T ss_pred CccccceEEE------EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence 4445444444 445689999999999999999999999999999999985 456788888999998
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
.+.....++|++|++||+|+.+.. + .++..+.+. +. .. ..|.++++
T Consensus 107 ~~~~~~~~~piilv~NK~Dl~~~~----~-------------------~~~i~~~~~-----~~---~~---~~~~~~~~ 152 (175)
T smart00177 107 LNEDELRDAVILVFANKQDLPDAM----K-------------------AAEITEKLG-----LH---SI---RDRNWYIQ 152 (175)
T ss_pred hhCHhhcCCcEEEEEeCcCcccCC----C-------------------HHHHHHHhC-----cc---cc---CCCcEEEE
Confidence 876656689999999999986431 0 011111100 00 00 23567778
Q ss_pred EEEeeCchhHHHHHHHHHHHH
Q 016253 361 RTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 361 ~TsA~d~~nI~~vF~~v~~~I 381 (392)
.|||++|+||+++|+++.+.+
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999987764
No 43
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=1.8e-17 Score=150.09 Aligned_cols=122 Identities=19% Similarity=0.215 Sum_probs=89.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.++||||+||++++..|..|+++++++|+|+|++ +.+++.+...|+..+... ...++|+++++|
T Consensus 46 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~----------~~~s~~~~~~~~~~i~~~-~~~~~piiiv~N 114 (191)
T cd04112 46 DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT----------NKASFDNIRAWLTEIKEY-AQEDVVIMLLGN 114 (191)
T ss_pred CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 445678999999999999999999999999999999985 344555555566555442 223689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+..++. ...+++..+. +. ..+.++++||+++.||+++|..
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~l~-~~---------------~~~~~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 115 KADMSGERV---------------------VKREDGERLA-KE---------------YGVPFMETSAKTGLNVELAFTA 157 (191)
T ss_pred cccchhccc---------------------cCHHHHHHHH-HH---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999864321 1112222221 11 1245789999999999999999
Q ss_pred HHHHHHHhhh
Q 016253 377 VDETLRRRHL 386 (392)
Q Consensus 377 v~~~Il~~~l 386 (392)
+.+.+.....
T Consensus 158 l~~~~~~~~~ 167 (191)
T cd04112 158 VAKELKHRKY 167 (191)
T ss_pred HHHHHHHhcc
Confidence 9999887643
No 44
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.76 E-value=5.7e-18 Score=147.97 Aligned_cols=128 Identities=14% Similarity=0.198 Sum_probs=100.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.++++|||||||++|+++...+||++++++.|+|+.. ..+...+..|.+.|-.-.+-.....-|+||+||
T Consensus 54 d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~-------~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN 126 (210)
T KOG0394|consen 54 DDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN-------PKSFENLENWRKEFLIQASPQDPETFPFVILGN 126 (210)
T ss_pred cCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC-------hhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence 7788999999999999999999999999999999999842 234455666666665544433445679999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+.+-.. ..-+.|.+|...+ +.+.+|+|||++..||..+|+.
T Consensus 127 KiD~~~~~~r~-------------------VS~~~Aq~WC~s~---------------gnipyfEtSAK~~~NV~~AFe~ 172 (210)
T KOG0394|consen 127 KIDVDGGKSRQ-------------------VSEKKAQTWCKSK---------------GNIPYFETSAKEATNVDEAFEE 172 (210)
T ss_pred cccCCCCccce-------------------eeHHHHHHHHHhc---------------CCceeEEecccccccHHHHHHH
Confidence 99997632111 3456788886643 3478899999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+....|...
T Consensus 173 ia~~aL~~E 181 (210)
T KOG0394|consen 173 IARRALANE 181 (210)
T ss_pred HHHHHHhcc
Confidence 999888665
No 45
>PTZ00099 rab6; Provisional
Probab=99.76 E-value=1.4e-17 Score=149.34 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=91.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+++.+++.||||+||++++.+|..||++++++|+|+|++ +..++.+...|+..+.... ..++|++|++|
T Consensus 25 ~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t----------~~~sf~~~~~w~~~i~~~~-~~~~piilVgN 93 (176)
T PTZ00099 25 DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDIT----------NRQSFENTTKWIQDILNER-GKDVIIALVGN 93 (176)
T ss_pred CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCeEEEEEE
Confidence 566789999999999999999999999999999999984 4556677777887776543 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+.+. ...+++..+... ....+++|||+++.||+++|+.
T Consensus 94 K~DL~~~~~---------------------v~~~e~~~~~~~----------------~~~~~~e~SAk~g~nV~~lf~~ 136 (176)
T PTZ00099 94 KTDLGDLRK---------------------VTYEEGMQKAQE----------------YNTMFHETSAKAGHNIKVLFKK 136 (176)
T ss_pred CcccccccC---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999964321 123344443211 1244678999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+..
T Consensus 137 l~~~l~~ 143 (176)
T PTZ00099 137 IAAKLPN 143 (176)
T ss_pred HHHHHHh
Confidence 9988753
No 46
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.75 E-value=1.2e-18 Score=145.90 Aligned_cols=122 Identities=20% Similarity=0.325 Sum_probs=96.1
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
||.|++...+. -...+.+.+||+|||+..|..|.+||.+++++|||+|. ++..+++|.-+.+-++
T Consensus 47 pT~GFn~k~v~-----~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS----------~D~krfeE~~~el~EL 111 (185)
T KOG0074|consen 47 PTNGFNTKKVE-----YDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDS----------TDEKRFEEISEELVEL 111 (185)
T ss_pred ccCCcceEEEe-----ecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeC----------CchHhHHHHHHHHHHH
Confidence 44455544441 12347899999999999999999999999999999994 5777888887778888
Q ss_pred HcCCCCCCceEEEEeeCCCCccc--------cccccCccccccccccccCCCCcccHHHHHHHHHH
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEK--------KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKK 338 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~--------kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~ 338 (392)
........+|+++|.||+|++-+ |+....++++.|..+-+|+.++ .+...+..|+..
T Consensus 112 leeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~-eg~~dg~~wv~s 176 (185)
T KOG0074|consen 112 LEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL-EGSTDGSDWVQS 176 (185)
T ss_pred hhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc-cCccCcchhhhc
Confidence 77777889999999999999753 3334467778899999888877 667777888654
No 47
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.75 E-value=7.1e-18 Score=148.26 Aligned_cols=130 Identities=21% Similarity=0.356 Sum_probs=95.4
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|+....+ ..+.+.+.+||++||++++.+|.+||++++++|||+|++ +..++.++.+++.+
T Consensus 29 ~pt~g~~~~~~------~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~----------~~~s~~~~~~~~~~ 92 (159)
T cd04150 29 IPTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERIGEAREELQR 92 (159)
T ss_pred CCCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHH
Confidence 34555544444 456789999999999999999999999999999999984 45678888888998
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
++..+...++|++|++||+|+... . ..++..+ ++ .+ +.. ..+.+++
T Consensus 93 ~~~~~~~~~~piilv~NK~Dl~~~-~----------------------~~~~i~~----~~-~~---~~~---~~~~~~~ 138 (159)
T cd04150 93 MLNEDELRDAVLLVFANKQDLPNA-M----------------------SAAEVTD----KL-GL---HSL---RNRNWYI 138 (159)
T ss_pred HHhcHHhcCCCEEEEEECCCCCCC-C----------------------CHHHHHH----Hh-Cc---ccc---CCCCEEE
Confidence 887666677999999999998532 1 0111111 11 00 000 1345677
Q ss_pred EEEEeeCchhHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.+||++|.||+++|+.+.+
T Consensus 139 ~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCCCHHHHHHHHhc
Confidence 78999999999999998764
No 48
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.74 E-value=1.3e-17 Score=150.10 Aligned_cols=134 Identities=17% Similarity=0.324 Sum_probs=98.3
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
||+|.....+ +..++.+++|||+||++++.+|.+||++++++|||+|++ +.+++.++..++..+
T Consensus 47 ~T~~~~~~~~------~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t----------~~~s~~~~~~~l~~~ 110 (182)
T PTZ00133 47 PTIGFNVETV------EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSN----------DRERIGDAREELERM 110 (182)
T ss_pred CccccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHH
Confidence 4445444444 456689999999999999999999999999999999984 456677788888888
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
+......++|++|++||.|+.+. . +.++..+.+... .. ..+.++++
T Consensus 111 ~~~~~~~~~piilv~NK~Dl~~~-~----------------------~~~~i~~~l~~~--------~~---~~~~~~~~ 156 (182)
T PTZ00133 111 LSEDELRDAVLLVFANKQDLPNA-M----------------------STTEVTEKLGLH--------SV---RQRNWYIQ 156 (182)
T ss_pred HhCHhhcCCCEEEEEeCCCCCCC-C----------------------CHHHHHHHhCCC--------cc---cCCcEEEE
Confidence 87655667999999999998542 1 011111111000 00 13456777
Q ss_pred EEEeeCchhHHHHHHHHHHHHHHh
Q 016253 361 RTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 361 ~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
.|||++++||+++|+.+.+.+.+.
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999998877654
No 49
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.74 E-value=1e-17 Score=153.26 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=88.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.++++||||+||+.++.+|..||++++++|+|+|++ +..++.....|...+... ..++|++||+|
T Consensus 40 ~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t----------~~~S~~~i~~w~~~i~~~--~~~~piilvgN 107 (200)
T smart00176 40 NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------ARVTYKNVPNWHRDLVRV--CENIPIVLCGN 107 (200)
T ss_pred CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC----------ChHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 556789999999999999999999999999999999985 445565566666666543 24799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+.+ .. +..++. . ...+.+++|||++++||+++|..
T Consensus 108 K~Dl~~~~v----------------------~~-~~~~~~-----~-----------~~~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 108 KVDVKDRKV----------------------KA-KSITFH-----R-----------KKNLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred CcccccccC----------------------CH-HHHHHH-----H-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999853211 01 112221 1 12366789999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+...+++.
T Consensus 149 l~~~i~~~ 156 (200)
T smart00176 149 LARKLIGD 156 (200)
T ss_pred HHHHHHhc
Confidence 99988754
No 50
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.74 E-value=3.3e-17 Score=148.52 Aligned_cols=133 Identities=16% Similarity=0.157 Sum_probs=92.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~ 295 (392)
+.+.+.+++|||+||+.++.+|..||++++++|+|||++ +..++++... |...+... ..++|++|++
T Consensus 47 ~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit----------~~~Sf~~~~~~w~~~i~~~--~~~~piilvg 114 (191)
T cd01875 47 DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIA----------SPSSYENVRHKWHPEVCHH--CPNVPILLVG 114 (191)
T ss_pred CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEE
Confidence 556689999999999999999999999999999999984 4556666654 44444432 2479999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||.||.+.+-....+ .+.. ......+++.+|..+. ..+.+++|||+++.||+++|.
T Consensus 115 NK~DL~~~~~~~~~~------~~~~---~~~v~~~~~~~~a~~~---------------~~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 115 TKKDLRNDADTLKKL------KEQG---QAPITPQQGGALAKQI---------------HAVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred eChhhhcChhhHHHH------hhcc---CCCCCHHHHHHHHHHc---------------CCcEEEEeCCCCCCCHHHHHH
Confidence 999996532100000 0000 0112344555542211 124578999999999999999
Q ss_pred HHHHHHHHhh
Q 016253 376 LVDETLRRRH 385 (392)
Q Consensus 376 ~v~~~Il~~~ 385 (392)
.+.+.++..+
T Consensus 171 ~l~~~~~~~~ 180 (191)
T cd01875 171 EAVRAVLNPT 180 (191)
T ss_pred HHHHHHhccc
Confidence 9999887643
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.73 E-value=1.2e-16 Score=141.30 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=88.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..+..|++++++++||+|++ +.+++.....|+..+.... .+++|++|++|
T Consensus 49 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~pvivv~n 117 (168)
T cd01866 49 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTSWLEDARQHS-NSNMTIMLIGN 117 (168)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 444568999999999999999999999999999999984 4455666667777665432 35789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+++. ...+++..+... ..+.++++||++++||.++|..
T Consensus 118 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 118 KCDLESRRE---------------------VSYEEGEAFAKE----------------HGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred CcccccccC---------------------CCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999864311 123334333221 1255788999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+++
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9887754
No 52
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.73 E-value=2.9e-17 Score=145.70 Aligned_cols=135 Identities=20% Similarity=0.338 Sum_probs=100.5
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|+....+ +..++.+++|||+|++.++..|.+||++++++|||+|++ +.+++.++..++..
T Consensus 28 ~~T~~~~~~~~------~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s----------~~~s~~~~~~~~~~ 91 (169)
T cd04158 28 IPTIGFNVETV------EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS----------HRDRVSEAHSELAK 91 (169)
T ss_pred CCcCceeEEEE------EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence 34555555445 556789999999999999999999999999999999984 45677888899999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+.+.....+.|++|++||+|+..+ + +.+++.+++. +..+. ..+.+++
T Consensus 92 ~~~~~~~~~~piilv~NK~Dl~~~-~----------------------~~~~~~~~~~--~~~~~--------~~~~~~~ 138 (169)
T cd04158 92 LLTEKELRDALLLIFANKQDVAGA-L----------------------SVEEMTELLS--LHKLC--------CGRSWYI 138 (169)
T ss_pred HhcChhhCCCCEEEEEeCcCcccC-C----------------------CHHHHHHHhC--Ccccc--------CCCcEEE
Confidence 987765667899999999998532 1 1233333321 10000 1234667
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
..|||+++.||+++|+.+.+.+..
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999877653
No 53
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=1.3e-17 Score=142.95 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=106.5
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|++...--++. ..+..+++++|||+||++||++..+||+|.-+++.|+|+ ++..+++....|.++
T Consensus 38 dptvgvdffarlie~-~pg~riklqlwdtagqerfrsitksyyrnsvgvllvydi----------tnr~sfehv~~w~~e 106 (213)
T KOG0091|consen 38 DPTVGVDFFARLIEL-RPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDI----------TNRESFEHVENWVKE 106 (213)
T ss_pred CCccchHHHHHHHhc-CCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEec----------cchhhHHHHHHHHHH
Confidence 577776643211111 167789999999999999999999999999999999998 577788888888777
Q ss_pred HHcCCC-CCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCccee
Q 016253 280 VLKQPC-FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 358 (392)
Q Consensus 280 i~~~~~-~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~ 358 (392)
..-+-. ..++.++||+.|+||-..+- .+.++|.++.+ .+...
T Consensus 107 a~m~~q~P~k~VFlLVGhKsDL~SqRq---------------------Vt~EEaEklAa----------------~hgM~ 149 (213)
T KOG0091|consen 107 AAMATQGPDKVVFLLVGHKSDLQSQRQ---------------------VTAEEAEKLAA----------------SHGMA 149 (213)
T ss_pred HHHhcCCCCeeEEEEeccccchhhhcc---------------------ccHHHHHHHHH----------------hcCce
Confidence 654433 45677899999999975432 45677766533 23467
Q ss_pred EEEEEeeCchhHHHHHHHHHHHHHHhhh
Q 016253 359 IYRTTALDPKLVKKTFKLVDETLRRRHL 386 (392)
Q Consensus 359 ~~~TsA~d~~nI~~vF~~v~~~Il~~~l 386 (392)
+.+|||+++.||+++|..+++.|...--
T Consensus 150 FVETSak~g~NVeEAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 150 FVETSAKNGCNVEEAFDMLAQEIFQAIQ 177 (213)
T ss_pred EEEecccCCCcHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999976543
No 54
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=5.7e-17 Score=144.00 Aligned_cols=118 Identities=10% Similarity=0.004 Sum_probs=82.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+.+||+||++.++..|..||++++++|||+|++ +..++.....|+..+.. ..++|+++++|
T Consensus 50 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~----------~~~s~~~~~~~~~~~~~---~~~~p~iiv~N 116 (169)
T cd01892 50 YGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSS----------DPKSFSYCAEVYKKYFM---LGEIPCLFVAA 116 (169)
T ss_pred CCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHhcc---CCCCeEEEEEE
Confidence 445568899999999999999999999999999999985 33455555566655422 23689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++.. ...++.+| .+.+ .- -.++.+||+++.||+++|+.
T Consensus 117 K~Dl~~~~~~---------------------~~~~~~~~-~~~~-------------~~-~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 117 KADLDEQQQR---------------------YEVQPDEF-CRKL-------------GL-PPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred cccccccccc---------------------cccCHHHH-HHHc-------------CC-CCCEEEEeccCccHHHHHHH
Confidence 9998643210 00111111 1111 00 12368999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.++.
T Consensus 161 l~~~~~~ 167 (169)
T cd01892 161 LATAAQY 167 (169)
T ss_pred HHHHhhC
Confidence 9988764
No 55
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.73 E-value=1.3e-16 Score=140.99 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=87.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++.+|..|+++++++++|+|++ +.+.++....|+..+.......++|+++++|
T Consensus 45 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 114 (168)
T cd04177 45 DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVT----------SEASLNELGELREQVLRIKDSDNVPMVLVGN 114 (168)
T ss_pred CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 445578999999999999999999999999999999984 3445555555666555433345799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+...+. ...+++.++. +.+ +.+.+++|||+.+.||+++|+.
T Consensus 115 K~D~~~~~~---------------------~~~~~~~~~~-~~~--------------~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 115 KADLEDDRQ---------------------VSREDGVSLS-QQW--------------GNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred ChhccccCc---------------------cCHHHHHHHH-HHc--------------CCceEEEeeCCCCCCHHHHHHH
Confidence 999865321 1122333321 111 1145678999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+...++.
T Consensus 159 i~~~~~~ 165 (168)
T cd04177 159 LVRQIIC 165 (168)
T ss_pred HHHHHhh
Confidence 9887764
No 56
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.72 E-value=2e-16 Score=138.45 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=87.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+++.+||++|+++++..|..++++++++|||+|.+ +.+++..+..|+..+..... .++|+++++|
T Consensus 46 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~iivv~n 114 (163)
T cd01860 46 DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDIT----------SEESFEKAKSWVKELQRNAS-PNIIIALVGN 114 (163)
T ss_pred CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEE
Confidence 445678999999999999999999999999999999974 44556666677776655432 5799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+...+- .+.+++.++... ..+.++++||+++.|+..+|+.
T Consensus 115 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd01860 115 KADLESKRQ---------------------VSTEEAQEYADE----------------NGLLFFETSAKTGENVNELFTE 157 (163)
T ss_pred CccccccCc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999864211 122333333221 1256789999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.|
T Consensus 158 l~~~l 162 (163)
T cd01860 158 IAKKL 162 (163)
T ss_pred HHHHh
Confidence 88765
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=1.9e-16 Score=139.37 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=84.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++||+.++..|..++++++++++|+|++ +..++.+...|+..+.... ..++|+++++|
T Consensus 48 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~n 116 (165)
T cd01864 48 EGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDIT----------RRSSFESVPHWIEEVEKYG-ASNVVLLLIGN 116 (165)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECc----------CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 334468899999999999999999999999999999985 3344555556666665432 34789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+.+. ...+++.++.. . .+...++++||+++.||+++|+.
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~-~--------------~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 117 KCDLEEQRE---------------------VLFEEACTLAE-K--------------NGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred Ccccccccc---------------------cCHHHHHHHHH-H--------------cCCcEEEEEECCCCCCHHHHHHH
Confidence 999865321 12233333221 1 11245678999999999999998
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 8754
No 58
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=7.2e-17 Score=150.76 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=102.9
Q ss_pred hcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccc
Q 016253 184 SDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFE 263 (392)
Q Consensus 184 ~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e 263 (392)
+.++|.||..+.+. . ...+ +.+.+.++||||+||+.++.++..||++++++|+|||++
T Consensus 38 F~~~y~pTi~~~~~-----~---~i~~------~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit-------- 95 (232)
T cd04174 38 YPETYVPTVFENYT-----A---GLET------EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS-------- 95 (232)
T ss_pred CCCCcCCceeeeeE-----E---EEEE------CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECC--------
Confidence 44678888754331 1 1233 566789999999999999999999999999999999985
Q ss_pred hhhhhhHHHH-HHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 264 DEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 264 ~~~~nrl~es-~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+.+++... ..|+..+... ..++|++||+||+||.++.-....+.. .. ......+++.+|..+.
T Consensus 96 --~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~-----~~----~~~Vs~~e~~~~a~~~--- 159 (232)
T cd04174 96 --RPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSN-----QK----QAPISYEQGCALAKQL--- 159 (232)
T ss_pred --ChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhcc-----cc----CCcCCHHHHHHHHHHc---
Confidence 45556554 3455555432 246899999999998542100000000 00 0114456777764321
Q ss_pred HhhccCCCCCCCcce-eEEEEEeeCch-hHHHHHHHHHHHHHHhhhh
Q 016253 343 LYFQSTAPDRVDRVF-KIYRTTALDPK-LVKKTFKLVDETLRRRHLF 387 (392)
Q Consensus 343 ~~~~~~~~~~~~r~~-~~~~TsA~d~~-nI~~vF~~v~~~Il~~~l~ 387 (392)
.+ .+++|||++++ ||+++|..++..+++..+.
T Consensus 160 -------------~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 160 -------------GAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred -------------CCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 13 46799999998 8999999999999876544
No 59
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.72 E-value=1e-16 Score=143.77 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=102.0
Q ss_pred hcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccc
Q 016253 184 SDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFE 263 (392)
Q Consensus 184 ~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e 263 (392)
+.++|.||.+|.+.. ...+ +++.+++++|||+||+.+++++..||++++++|+|+|++
T Consensus 26 f~~~~~~Ti~~~~~~--------~~~~------~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~-------- 83 (176)
T cd04133 26 FPTDYIPTVFDNFSA--------NVSV------DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLI-------- 83 (176)
T ss_pred CCCCCCCcceeeeEE--------EEEE------CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcC--------
Confidence 456788888665421 1223 556689999999999999999999999999999999984
Q ss_pred hhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 264 DEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 264 ~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+.++++... .|+..+.... .++|++|+|||+||.+++.. +.. +. . .-....+++.+|....
T Consensus 84 --~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~--~~~------~~--~-~~~v~~~~~~~~a~~~--- 145 (176)
T cd04133 84 --SRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQY--LAD------HP--G-ASPITTAQGEELRKQI--- 145 (176)
T ss_pred --CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhh--hhh------cc--C-CCCCCHHHHHHHHHHc---
Confidence 556666663 5666664432 47999999999999654321 000 00 0 0013455666653221
Q ss_pred HhhccCCCCCCCcce-eEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 343 LYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 343 ~~~~~~~~~~~~r~~-~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
.+ .+++|||+++.||+++|+.+.+.++
T Consensus 146 -------------~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 146 -------------GAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred -------------CCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 13 4679999999999999999998764
No 60
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.71 E-value=3.4e-16 Score=136.76 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=86.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.+...|..++++++++++|+|++ +.+++.....|+..+.......++|+++++|
T Consensus 45 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 45 DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVT----------RRDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECC----------CHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 334568999999999999999999999999999999984 3445556566666665554456799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... .+.+++.++... ..+.++++||+++.|++++|+.
T Consensus 115 K~D~~~~~----------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 115 KIDKENRE----------------------VTREEGLKFARK----------------HNMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred CCcccccc----------------------cCHHHHHHHHHH----------------cCCEEEEEecCCCCCHHHHHHH
Confidence 99996221 123333343221 1356789999999999999988
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd01863 157 LVEK 160 (161)
T ss_pred HHHh
Confidence 7654
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.71 E-value=2.4e-16 Score=137.67 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=84.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..++++++++|+|+|++ +.+++.+...++..+.... ..++|+++++|
T Consensus 45 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~iilv~n 113 (161)
T cd01861 45 EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDIT----------NRQSFDNTDKWIDDVRDER-GNDVIIVLVGN 113 (161)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCEEEEEEE
Confidence 334467999999999999999999999999999999984 4455666667777665432 23799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+.+. ...++...+... ..+.++.+||+++.|++++|+.
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~ 156 (161)
T cd01861 114 KTDLSDKRQ---------------------VSTEEGEKKAKE----------------LNAMFIETSAKAGHNVKELFRK 156 (161)
T ss_pred ChhccccCc---------------------cCHHHHHHHHHH----------------hCCEEEEEeCCCCCCHHHHHHH
Confidence 999853211 112222222111 1255678999999999999999
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 157 i~~~ 160 (161)
T cd01861 157 IASA 160 (161)
T ss_pred HHHh
Confidence 8764
No 62
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.71 E-value=4.5e-16 Score=137.26 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=87.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC---CCCCCceEEE
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFML 293 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~---~~~~~~~iiL 293 (392)
....+.+++||++|++.+...|..|+++++++|+|+|++ +...+.+...|+..+... ....++|+++
T Consensus 45 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 114 (172)
T cd01862 45 DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVT----------NPKSFESLDSWRDEFLIQASPSDPENFPFVV 114 (172)
T ss_pred CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCccCCCCceEEE
Confidence 344568899999999999999999999999999999984 233444444454444332 2234799999
Q ss_pred EeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHH
Q 016253 294 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 373 (392)
Q Consensus 294 ~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~v 373 (392)
++||+|+..++. ...++...+... ...+.++.+||+++.|++.+
T Consensus 115 v~nK~Dl~~~~~---------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 115 LGNKIDLEEKRQ---------------------VSTKKAQQWCQS---------------NGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECcccccccc---------------------cCHHHHHHHHHH---------------cCCceEEEEECCCCCCHHHH
Confidence 999999974211 122333333221 11256788999999999999
Q ss_pred HHHHHHHHHHhh
Q 016253 374 FKLVDETLRRRH 385 (392)
Q Consensus 374 F~~v~~~Il~~~ 385 (392)
|+.+.+.+++.+
T Consensus 159 ~~~i~~~~~~~~ 170 (172)
T cd01862 159 FETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHhcc
Confidence 999998887653
No 63
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.71 E-value=3.5e-17 Score=137.94 Aligned_cols=132 Identities=18% Similarity=0.319 Sum_probs=108.2
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||.|++...+ +.+.+++.+||+|||+++|++|..|++++++++||+|.+ +...+.-|...+.+
T Consensus 50 iptvGfnmrk~------tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaa----------d~~k~~~sr~EL~~ 113 (186)
T KOG0075|consen 50 IPTVGFNMRKV------TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAA----------DPDKLEASRSELHD 113 (186)
T ss_pred cccccceeEEe------ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecC----------CcccchhhHHHHHH
Confidence 79999999999 888999999999999999999999999999999999974 45667788888999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
++..|.+..+|++++|||.|+.++ + |. .+-+.+.-. .+-++|.+-+
T Consensus 114 LL~k~~l~gip~LVLGnK~d~~~A-L-------------------~~------~~li~rmgL--------~sitdREvcC 159 (186)
T KOG0075|consen 114 LLDKPSLTGIPLLVLGNKIDLPGA-L-------------------SK------IALIERMGL--------SSITDREVCC 159 (186)
T ss_pred HhcchhhcCCcEEEecccccCccc-c-------------------cH------HHHHHHhCc--------cccccceEEE
Confidence 999999999999999999999765 1 10 011111111 1124789999
Q ss_pred EEEEeeCchhHHHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~I 381 (392)
|.+||++..||+.+.+++.+.-
T Consensus 160 ~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHh
Confidence 9999999999999998887654
No 64
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.71 E-value=9.5e-17 Score=144.68 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=99.8
Q ss_pred hcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccc
Q 016253 184 SDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFE 263 (392)
Q Consensus 184 ~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e 263 (392)
+.++|.||..+.+. ....+ +.+.+.+++|||+||+.++.+|..||++++++|+|+|++
T Consensus 30 f~~~~~pT~~~~~~--------~~~~~------~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit-------- 87 (182)
T cd04172 30 FPENYVPTVFENYT--------ASFEI------DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS-------- 87 (182)
T ss_pred CCCccCCceeeeeE--------EEEEE------CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECC--------
Confidence 34678888865431 12233 556789999999999999999999999999999999984
Q ss_pred hhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 264 DEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 264 ~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+..++.+.. .|...+... .+++|++|++||+||.+..-....+.. .. ......+++.+|..+.
T Consensus 88 --~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~-----~~----~~~v~~~~~~~~a~~~--- 151 (182)
T cd04172 88 --RPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSN-----HR----QTPVSYDQGANMAKQI--- 151 (182)
T ss_pred --CHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHh-----cC----CCCCCHHHHHHHHHHc---
Confidence 455666653 454554332 246899999999998542100000000 00 0113456666664321
Q ss_pred HhhccCCCCCCCcc-eeEEEEEeeCchh-HHHHHHHHHHHHHH
Q 016253 343 LYFQSTAPDRVDRV-FKIYRTTALDPKL-VKKTFKLVDETLRR 383 (392)
Q Consensus 343 ~~~~~~~~~~~~r~-~~~~~TsA~d~~n-I~~vF~~v~~~Il~ 383 (392)
. +.+++|||+++.| |+++|..+...++.
T Consensus 152 -------------~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 152 -------------GAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred -------------CCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 2 3578999999999 99999998886553
No 65
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.70 E-value=3.1e-16 Score=145.45 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=100.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..+.+.+.+|||+||+.++.+|..||++++++|+|+|++ +..++.+...+|..+... ...++|++|++|
T Consensus 40 ~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt----------~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgN 108 (220)
T cd04126 40 QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVS----------NVQSLEELEDRFLGLTDT-ANEDCLFAVVGN 108 (220)
T ss_pred EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEE
Confidence 345578999999999999999999999999999999984 455677777778777653 235789999999
Q ss_pred CCCCccccccc----cCccccccccccccCCCCcccHHHHHHHHHHHH-HHHhhccCCCCCCCcceeEEEEEeeCchhHH
Q 016253 297 KFDIFEKKVLK----VPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF-EELYFQSTAPDRVDRVFKIYRTTALDPKLVK 371 (392)
Q Consensus 297 K~Dl~~~kl~~----~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f-~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~ 371 (392)
|+|+.+..... .+... -... ..-....+++.+|..+.- ...+..+-. +...+.+++|||++|.||+
T Consensus 109 K~DL~~~~~~~~~~~~~~~~---~~~~---~~r~v~~~e~~~~a~~~~~~~~~~~~~~---~~~~~~~~E~SA~tg~~V~ 179 (220)
T cd04126 109 KLDLTEEGALAGQEKDAGDR---VSPE---DQRQVTLEDAKAFYKRINKYKMLDEDLS---PAAEKMCFETSAKTGYNVD 179 (220)
T ss_pred Cccccccccccccccccccc---cccc---ccccCCHHHHHHHHHHhCcccccccccc---ccccceEEEeeCCCCCCHH
Confidence 99997521110 00000 0000 001145677777754421 000000001 1123567899999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 016253 372 KTFKLVDETLRRRHLF 387 (392)
Q Consensus 372 ~vF~~v~~~Il~~~l~ 387 (392)
++|..+.+.++...+.
T Consensus 180 elf~~i~~~~~~~~~~ 195 (220)
T cd04126 180 ELFEYLFNLVLPLILA 195 (220)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988865443
No 66
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.70 E-value=2.1e-16 Score=140.82 Aligned_cols=121 Identities=15% Similarity=0.248 Sum_probs=89.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+++|||+|++.++.+|..||++++++|+|+|++ +..++.....|+..+.......++|++|++|
T Consensus 46 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~----------~~~Sf~~~~~~~~~i~~~~~~~~~piilvgN 115 (172)
T cd04141 46 DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVT----------DRHSFQEASEFKKLITRVRLTEDIPLVLVGN 115 (172)
T ss_pred CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECC----------chhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556678999999999999999999999999999999984 4455555555444443322234789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. .+.+++.++... +.+.+++|||+++.||+++|+.
T Consensus 116 K~Dl~~~~~---------------------v~~~~~~~~a~~----------------~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 116 KVDLESQRQ---------------------VTTEEGRNLARE----------------FNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ChhhhhcCc---------------------cCHHHHHHHHHH----------------hCCEEEEEecCCCCCHHHHHHH
Confidence 999864321 123344444211 1256779999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+...+++.
T Consensus 159 l~~~~~~~ 166 (172)
T cd04141 159 LVREIRRK 166 (172)
T ss_pred HHHHHHHh
Confidence 99888754
No 67
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.70 E-value=6.7e-16 Score=134.77 Aligned_cols=119 Identities=17% Similarity=0.191 Sum_probs=86.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+++||++||+.+...|..++++++++++|+|++ +..++.....++..+.......+.|+++++|
T Consensus 44 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 113 (164)
T cd04139 44 DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSIT----------DMESFTATAEFREQILRVKDDDNVPLLLVGN 113 (164)
T ss_pred CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556678999999999999999999999999999999984 3344555555666655543345799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...++..++.. . . .+.++++||++++||+++|+.
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~-~---~------------~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 114 KCDLEDKRQ---------------------VSSEEAANLAR-Q---W------------GVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred ccccccccc---------------------cCHHHHHHHHH-H---h------------CCeEEEeeCCCCCCHHHHHHH
Confidence 999865211 11122222211 1 0 145689999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 157 l~~~~~ 162 (164)
T cd04139 157 LVREIR 162 (164)
T ss_pred HHHHHH
Confidence 987764
No 68
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.70 E-value=1.6e-16 Score=140.35 Aligned_cols=128 Identities=20% Similarity=0.374 Sum_probs=91.2
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|.....+ +.+++++++||++||+.++.+|.+||++++++|||+|.+ +..++..+..++..
T Consensus 29 ~pt~g~~~~~i------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t----------~~~s~~~~~~~l~~ 92 (164)
T cd04162 29 VPTTGFNSVAI------PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA----------DSERLPLARQELHQ 92 (164)
T ss_pred cccCCcceEEE------eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 34555544445 566789999999999999999999999999999999975 34467777778888
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+.... .++|++|++||+|+..++. +++..+.+. ...+ + .++.+++
T Consensus 93 ~~~~~--~~~piilv~NK~Dl~~~~~-----------------------~~~i~~~~~--~~~~-----~---~~~~~~~ 137 (164)
T cd04162 93 LLQHP--PDLPLVVLANKQDLPAARS-----------------------VQEIHKELE--LEPI-----A---RGRRWIL 137 (164)
T ss_pred HHhCC--CCCcEEEEEeCcCCcCCCC-----------------------HHHHHHHhC--Chhh-----c---CCCceEE
Confidence 87543 5799999999999865421 111111000 0001 0 1345777
Q ss_pred EEEEeeC------chhHHHHHHHHH
Q 016253 360 YRTTALD------PKLVKKTFKLVD 378 (392)
Q Consensus 360 ~~TsA~d------~~nI~~vF~~v~ 378 (392)
+.|||++ +++|+++|+.+.
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHh
Confidence 8899988 999999998764
No 69
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.70 E-value=6.4e-16 Score=135.03 Aligned_cols=119 Identities=16% Similarity=0.231 Sum_probs=87.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.+...|..++++++++|+|+|++ +.+++.....|+..+..... .++|+++++|
T Consensus 45 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~l~~~~~~~~-~~~pivvv~n 113 (164)
T smart00175 45 DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDIT----------NRESFENLKNWLKELREYAD-PNVVIMLVGN 113 (164)
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEE
Confidence 344467899999999999999999999999999999984 34455555566655544322 4799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..... .+.+.+.++.. + ..+.++++||+++.+++.+|+.
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~e~Sa~~~~~i~~l~~~ 156 (164)
T smart00175 114 KSDLEDQRQ---------------------VSREEAEAFAE-E---------------HGLPFFETSAKTNTNVEEAFEE 156 (164)
T ss_pred chhcccccC---------------------CCHHHHHHHHH-H---------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999753210 12344444432 1 1145789999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+..
T Consensus 157 i~~~~~~ 163 (164)
T smart00175 157 LAREILK 163 (164)
T ss_pred HHHHHhh
Confidence 9988754
No 70
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=4.4e-16 Score=142.13 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=90.3
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHc---CCCCCCceEEEE
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK---QPCFEKTSFMLF 294 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~---~~~~~~~~iiL~ 294 (392)
...+.+++|||+||++++.+|..||++++++|+|+|++ +..++.+...|+..+.+ .+...++|++|+
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t----------~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv 116 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVT----------RPSTFEAVLKWKADLDSKVTLPNGEPIPCLLL 116 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 56789999999999999999999999999999999984 45566666666555532 222357899999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
+||+|+...+. ...+++.++.... ....+++|||+++.||+++|
T Consensus 117 ~NK~Dl~~~~~---------------------~~~~~~~~~~~~~---------------~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 117 ANKCDLKKRLA---------------------KDGEQMDQFCKEN---------------GFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCcccccc---------------------cCHHHHHHHHHHc---------------CCceEEEEeCCCCCCHHHHH
Confidence 99999964211 1234444443211 11456899999999999999
Q ss_pred HHHHHHHHHh
Q 016253 375 KLVDETLRRR 384 (392)
Q Consensus 375 ~~v~~~Il~~ 384 (392)
+.+.+.+++.
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 71
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.9e-17 Score=135.73 Aligned_cols=134 Identities=18% Similarity=0.326 Sum_probs=109.5
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|++...+ ..++.++++||.|||.+.|+.|+-||.+++++|||||. .+..|+.-+...|..
T Consensus 47 kPtigfnve~v------~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDs----------sd~dris~a~~el~~ 110 (182)
T KOG0072|consen 47 KPTIGFNVETV------PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDS----------SDRDRISIAGVELYS 110 (182)
T ss_pred CCCCCcCcccc------ccccccceeeEccCcccccHHHHHHhcccceEEEEEec----------cchhhhhhhHHHHHH
Confidence 68888887777 78899999999999999999999999999999999996 567777888899999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
++..+.++++.+++|+||+|...+. ...++..-+. ...+ ++|.+.+
T Consensus 111 mL~E~eLq~a~llv~anKqD~~~~~-----------------------t~~E~~~~L~--l~~L---------k~r~~~I 156 (182)
T KOG0072|consen 111 MLQEEELQHAKLLVFANKQDYSGAL-----------------------TRSEVLKMLG--LQKL---------KDRIWQI 156 (182)
T ss_pred HhccHhhcCceEEEEeccccchhhh-----------------------hHHHHHHHhC--hHHH---------hhheeEE
Confidence 9999999999999999999985431 1222222111 1111 3567889
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
+.|||+.+++++.+.+++.+.+..
T Consensus 157 v~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 157 VKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred EeeccccccCCcHHHHHHHHHHhc
Confidence 999999999999999999988754
No 72
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=2e-16 Score=140.08 Aligned_cols=116 Identities=24% Similarity=0.367 Sum_probs=83.8
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
+..+.+||++|++.++..|..|+++++++++|+|.+ +..++.+...++..+.......++|+++++||+|
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 126 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSA----------DKKRLEEAGAELVELLEEEKLAGVPVLVFANKQD 126 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCC
Confidence 467899999999999999999999999999999985 3345666666777776654455799999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.++. ..++..+ .+ .+ .....+.++++.+||++++||+++|+++.+
T Consensus 127 ~~~~~-----------------------~~~~i~~----~l-~~------~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 127 LATAA-----------------------PAEEIAE----AL-NL------HDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CccCC-----------------------CHHHHHH----Hc-CC------cccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 85421 1111111 11 00 001234566778999999999999998864
No 73
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.2e-17 Score=138.52 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=115.5
Q ss_pred hhhhcCCCCCCcccceeccceeeeeEEEeeccC--CC-----ccccccceeEEecCCccccccchhccccccCEEEEEEE
Q 016253 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPV--GE-----HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAA 253 (392)
Q Consensus 181 ~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~--~~-----~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~d 253 (392)
-|+.+..|.|.- ..|+||+.-+..++ .+ .....+.+++|||+|||+||++...||+++-+.++++|
T Consensus 27 y~YTD~~F~~qF-------IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFD 99 (219)
T KOG0081|consen 27 YQYTDGKFNTQF-------ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFD 99 (219)
T ss_pred EEecCCccccee-------EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEe
Confidence 356666677755 67888864322111 11 13356889999999999999999999999999999999
Q ss_pred cccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHH
Q 016253 254 ISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAY 333 (392)
Q Consensus 254 ls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~ 333 (392)
+ ++..++.+...|+..+-.+....++.|+|++||+||...++. .-++|.
T Consensus 100 l----------T~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V---------------------s~~qa~ 148 (219)
T KOG0081|consen 100 L----------TSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV---------------------SEDQAA 148 (219)
T ss_pred c----------cchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh---------------------hHHHHH
Confidence 9 466788888899988888877888899999999999876542 122232
Q ss_pred HHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhh
Q 016253 334 EFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHL 386 (392)
Q Consensus 334 ~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l 386 (392)
+ +..+| .+.+++|||-++.||+++.+.+.+.|+++.-
T Consensus 149 ~-La~ky---------------glPYfETSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 149 A-LADKY---------------GLPYFETSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred H-HHHHh---------------CCCeeeeccccCcCHHHHHHHHHHHHHHHHH
Confidence 2 22222 3778999999999999999999999887643
No 74
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.69 E-value=2.3e-17 Score=136.87 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=100.2
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+||..-.--+.. +.+.+++++|||+||++||+....||++++++++++|+ .+.-+++....|+.+
T Consensus 28 istvgid~rnkli~~--~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi----------ankasfdn~~~wlse 95 (192)
T KOG0083|consen 28 ISTVGIDFRNKLIDM--DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI----------ANKASFDNCQAWLSE 95 (192)
T ss_pred eeeeeeccccceecc--CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec----------ccchhHHHHHHHHHH
Confidence 467777643322222 67889999999999999999999999999999999998 455666666666666
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
|-.. ....+.++|++||+|+-.++..... .| ..-|.. ..+.+
T Consensus 96 i~ey-~k~~v~l~llgnk~d~a~er~v~~d--------------dg---~kla~~--------------------y~ipf 137 (192)
T KOG0083|consen 96 IHEY-AKEAVALMLLGNKCDLAHERAVKRD--------------DG---EKLAEA--------------------YGIPF 137 (192)
T ss_pred HHHH-HHhhHhHhhhccccccchhhccccc--------------hH---HHHHHH--------------------HCCCc
Confidence 6432 2235789999999999766542210 12 111111 13678
Q ss_pred EEEEeeCchhHHHHHHHHHHHHHHhhh
Q 016253 360 YRTTALDPKLVKKTFKLVDETLRRRHL 386 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il~~~l 386 (392)
.+|||++|-||+.+|-.+++.+++...
T Consensus 138 metsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 138 METSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred eeccccccccHhHHHHHHHHHHHHhcc
Confidence 899999999999999999999987644
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.69 E-value=5.6e-16 Score=135.85 Aligned_cols=115 Identities=19% Similarity=0.214 Sum_probs=81.9
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
...+.+.+|||+|++.++.+|.++++++++++||+|++ +..++.+...|++.+.... .++|+++++||
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK 116 (164)
T cd04101 49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVS----------NKASFENCSRWVNKVRTAS--KHMPGVLVGNK 116 (164)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC--CCCCEEEEEEC
Confidence 45578999999999999999999999999999999985 3344444455555554332 46899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+.++.- .....+..+. .. ..+.++.+||+++.+|+++|+.+
T Consensus 117 ~Dl~~~~~---------------------~~~~~~~~~~-~~---------------~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 117 MDLADKAE---------------------VTDAQAQAFA-QA---------------NQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred cccccccC---------------------CCHHHHHHHH-HH---------------cCCeEEEEeCCCCCChHHHHHHH
Confidence 99854310 1112222221 10 11456789999999999999998
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8765
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.68 E-value=1.4e-15 Score=132.33 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=81.3
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
...+.+.+||++|++.++..|..++++++++++|+|+++ .+++.....|+..+.... ..+.|+++++||
T Consensus 46 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK 114 (162)
T cd04123 46 GKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD----------ADSFQKVKKWIKELKQMR-GNNISLVIVGNK 114 (162)
T ss_pred CEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEEC
Confidence 344678999999999999999999999999999999853 334444445555543322 126899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+...+- ...++..++.. ...+.++++||+++.+++++|+.+
T Consensus 115 ~D~~~~~~---------------------~~~~~~~~~~~----------------~~~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 115 IDLERQRV---------------------VSKSEAEEYAK----------------SVGAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred cccccccC---------------------CCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99864310 11122222211 012446789999999999999998
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 158 ~~~~ 161 (162)
T cd04123 158 AKRM 161 (162)
T ss_pred HHHh
Confidence 8765
No 77
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.68 E-value=4.5e-16 Score=139.13 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=87.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+||+.++.+|..||++++++|+|+|++ +..++.+... |+..+... ..++|++|++
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~----------~~~s~~~~~~~w~~~i~~~--~~~~piilvg 112 (175)
T cd01874 45 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV----------SPSSFENVKEKWVPEITHH--CPKTPFLLVG 112 (175)
T ss_pred CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 455688999999999999999999999999999999984 4455666554 44444332 2468999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+......+.. +. .-....+++.++..+ + +.+.+++|||+++.||+++|+
T Consensus 113 nK~Dl~~~~~~~~~l~~------~~---~~~v~~~~~~~~a~~-~--------------~~~~~~e~SA~tg~~v~~~f~ 168 (175)
T cd01874 113 TQIDLRDDPSTIEKLAK------NK---QKPITPETGEKLARD-L--------------KAVKYVECSALTQKGLKNVFD 168 (175)
T ss_pred ECHhhhhChhhHHHhhh------cc---CCCcCHHHHHHHHHH-h--------------CCcEEEEecCCCCCCHHHHHH
Confidence 99998654221111100 00 001344556555321 1 125678999999999999999
Q ss_pred HHHHH
Q 016253 376 LVDET 380 (392)
Q Consensus 376 ~v~~~ 380 (392)
.+...
T Consensus 169 ~~~~~ 173 (175)
T cd01874 169 EAILA 173 (175)
T ss_pred HHHHH
Confidence 88763
No 78
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=4.9e-16 Score=139.44 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=97.9
Q ss_pred hcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccc
Q 016253 184 SDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFE 263 (392)
Q Consensus 184 ~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e 263 (392)
+.++|.||..+... ....+ +.+.+.+++|||+||+.++.++..||++++++|+|+|++
T Consensus 26 f~~~~~~t~~~~~~--------~~~~~------~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit-------- 83 (178)
T cd04131 26 YPETYVPTVFENYT--------ASFEI------DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDIS-------- 83 (178)
T ss_pred CCCCcCCceEEEEE--------EEEEE------CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECC--------
Confidence 44578888754321 11233 556789999999999999999999999999999999985
Q ss_pred hhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 264 DEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 264 ~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+.+++++.+ .|...+... .+++|++|++||+||.++.-....+. .. ..-+...+++.+|..+.
T Consensus 84 --~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~------~~---~~~~v~~~e~~~~a~~~--- 147 (178)
T cd04131 84 --RPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELS------HQ---RQAPVSYEQGCAIAKQL--- 147 (178)
T ss_pred --ChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHH------hc---CCCCCCHHHHHHHHHHh---
Confidence 455565543 454444432 24789999999999864210000000 00 00013456666664321
Q ss_pred HhhccCCCCCCCcceeEEEEEeeCchh-HHHHHHHHHHHHH
Q 016253 343 LYFQSTAPDRVDRVFKIYRTTALDPKL-VKKTFKLVDETLR 382 (392)
Q Consensus 343 ~~~~~~~~~~~~r~~~~~~TsA~d~~n-I~~vF~~v~~~Il 382 (392)
.-..+++|||++++| |+++|..+....+
T Consensus 148 ------------~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 148 ------------GAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred ------------CCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 012568999999996 9999999888654
No 79
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.68 E-value=1.3e-15 Score=137.50 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=88.0
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEee
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~N 296 (392)
...+.+.+||++|++.++..+..++++++++++|+|++ +.+.+.+... |...+... ..++|++|++|
T Consensus 46 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~----------~~~s~~~~~~~~~~~i~~~--~~~~piilvgn 113 (187)
T cd04129 46 GKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVD----------TPDSLENVRTKWIEEVRRY--CPNVPVILVGL 113 (187)
T ss_pred CEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEee
Confidence 34467899999999999888888899999999999984 3344555443 44444322 24699999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+..+......... ..+ .+.+++..+.. .+ ....+++|||+++.||+++|+.
T Consensus 114 K~Dl~~~~~~~~~~~~----~~~-------~~~~~~~~~~~-~~--------------~~~~~~e~Sa~~~~~v~~~f~~ 167 (187)
T cd04129 114 KKDLRQDAVAKEEYRT----QRF-------VPIQQGKRVAK-EI--------------GAKKYMECSALTGEGVDDVFEA 167 (187)
T ss_pred ChhhhhCccccccccc----CCc-------CCHHHHHHHHH-Hh--------------CCcEEEEccCCCCCCHHHHHHH
Confidence 9998543221100000 001 23445544332 11 1135678999999999999999
Q ss_pred HHHHHHHhhhhh
Q 016253 377 VDETLRRRHLFE 388 (392)
Q Consensus 377 v~~~Il~~~l~~ 388 (392)
+.+.++...-++
T Consensus 168 l~~~~~~~~~~~ 179 (187)
T cd04129 168 ATRAALLVRKSE 179 (187)
T ss_pred HHHHHhcccCcc
Confidence 998887655444
No 80
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.67 E-value=7e-16 Score=134.80 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=87.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+||++++.+|..|+++++++++|+|++ +..++.+...|++.+.......++|++|++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 45 DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSIT----------SQSSFNDLQDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred CCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 455678999999999999999999999999999999984 3445666666776666543345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++.. . ..+.++++||+++.||+++|+.
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~~-~---------------~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 115 KCDLEDERV---------------------VSREEGQALAR-Q---------------WGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred Cccccccce---------------------ecHHHHHHHHH-H---------------cCCeEEEecCCCCCCHHHHHHH
Confidence 999864311 11222322211 1 1145678999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 88765
No 81
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.66 E-value=1.2e-15 Score=137.29 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=86.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+++||++||+.++..|..|+++++++++|+|++ +..++.+...|+..+.... ...+| +|++|
T Consensus 45 ~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t----------~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgn 112 (182)
T cd04128 45 RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLT----------RKSTLNSIKEWYRQARGFN-KTAIP-ILVGT 112 (182)
T ss_pred CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCE-EEEEE
Confidence 455689999999999999999999999999999999985 4456666666766665432 23467 67899
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+. .. .. ...-.+++.+|. +. ....+++|||+++.||+++|+.
T Consensus 113 K~Dl~~~~-~~---~~------------~~~~~~~~~~~a-----~~-----------~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 113 KYDLFADL-PP---EE------------QEEITKQARKYA-----KA-----------MKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred chhccccc-cc---hh------------hhhhHHHHHHHH-----HH-----------cCCEEEEEeCCCCCCHHHHHHH
Confidence 99986421 00 00 000112233331 11 1245678999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.++.
T Consensus 161 l~~~l~~ 167 (182)
T cd04128 161 VLAKAFD 167 (182)
T ss_pred HHHHHHh
Confidence 9988875
No 82
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.66 E-value=7.8e-16 Score=136.37 Aligned_cols=133 Identities=19% Similarity=0.353 Sum_probs=95.9
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|.....+ ..+++.+++||++|++.++.+|.+||++++++|||+|.+ +..++.++..++..
T Consensus 28 ~~t~g~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s----------~~~s~~~~~~~l~~ 91 (167)
T cd04161 28 APTVGFTPTKL------RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS----------DDDRVQEVKEILRE 91 (167)
T ss_pred cCcccceEEEE------EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC----------chhHHHHHHHHHHH
Confidence 34445544445 556789999999999999999999999999999999974 44578888889999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+.+++...++|++||+||+|+...+- ..+..+.+. ...+ . ......+++
T Consensus 92 l~~~~~~~~~piliv~NK~Dl~~~~~-----------------------~~~i~~~~~--l~~~-----~-~~~~~~~~~ 140 (167)
T cd04161 92 LLQHPRVSGKPILVLANKQDKKNALL-----------------------GADVIEYLS--LEKL-----V-NENKSLCHI 140 (167)
T ss_pred HHcCccccCCcEEEEEeCCCCcCCCC-----------------------HHHHHHhcC--cccc-----c-CCCCceEEE
Confidence 98876667899999999999865421 111111100 0000 0 001234677
Q ss_pred EEEEeeCc------hhHHHHHHHHHH
Q 016253 360 YRTTALDP------KLVKKTFKLVDE 379 (392)
Q Consensus 360 ~~TsA~d~------~nI~~vF~~v~~ 379 (392)
..|||++| +++.+.|+++.+
T Consensus 141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCccccCHHHHHHHHhc
Confidence 78999998 899999998853
No 83
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.66 E-value=1e-15 Score=137.78 Aligned_cols=123 Identities=15% Similarity=0.271 Sum_probs=89.0
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+.+.+++|||+|+++++..|..|+++++++|||+|.+ +.+++.++..++..+.......+.|++|++||
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSV----------DVERMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 46689999999999999999999999999999999975 34456666667766665444457899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+.+. . ..++...++ .+. .. ...+.++++.|||++++||+++|+.+
T Consensus 119 ~D~~~~-~----------------------~~~~~~~~~-----~~~---~~--~~~~~~~~~~~SA~~~~gi~~l~~~l 165 (183)
T cd04152 119 QDLPNA-L----------------------SVSEVEKLL-----ALH---EL--SASTPWHVQPACAIIGEGLQEGLEKL 165 (183)
T ss_pred cCcccc-C----------------------CHHHHHHHh-----Ccc---cc--CCCCceEEEEeecccCCCHHHHHHHH
Confidence 998632 1 111111111 100 00 01223667899999999999999999
Q ss_pred HHHHHH
Q 016253 378 DETLRR 383 (392)
Q Consensus 378 ~~~Il~ 383 (392)
.+.++.
T Consensus 166 ~~~l~~ 171 (183)
T cd04152 166 YEMILK 171 (183)
T ss_pred HHHHHH
Confidence 988863
No 84
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.66 E-value=1.5e-15 Score=133.65 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=87.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..|+++++++++|+|++ +.+++.+...|++.+.+. ...++|+++++|
T Consensus 45 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~sf~~~~~~~~~~~~~-~~~~~~iilvgn 113 (161)
T cd04117 45 DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDIS----------SERSYQHIMKWVSDVDEY-APEGVQKILIGN 113 (161)
T ss_pred CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 445678999999999999999999999999999999984 456677777777766543 234789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+++. ...+++..+... ..+.+++|||+++.||+++|..
T Consensus 114 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~f~~ 156 (161)
T cd04117 114 KADEEQKRQ---------------------VGDEQGNKLAKE----------------YGMDFFETSACTNSNIKESFTR 156 (161)
T ss_pred CcccccccC---------------------CCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999864321 122344444211 0134689999999999999999
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 157 l~~~ 160 (161)
T cd04117 157 LTEL 160 (161)
T ss_pred HHhh
Confidence 8753
No 85
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=3.3e-16 Score=145.20 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=87.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+++++|||+||+.++.+|..||++++++|+|+|++ +..++.....|+..+... ..++|++|++|
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~----------~~~s~~~i~~w~~~i~~~--~~~~piilvgN 125 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125 (219)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCC----------CHHHHHHHHHHHHHHHHh--CCCCcEEEEEE
Confidence 445689999999999999999999999999999999985 445555556666666543 24799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+....+ ..++. ++.. .+.+.+++|||+++.||+++|..
T Consensus 126 K~Dl~~~~v----------------------~~~~~-~~~~----------------~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 126 KVDVKNRQV----------------------KAKQV-TFHR----------------KKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred chhhhhccC----------------------CHHHH-HHHH----------------hcCCEEEEcCCCCCCCHHHHHHH
Confidence 999853211 01111 2211 12256789999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.++..
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99988643
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.65 E-value=2.9e-15 Score=129.02 Aligned_cols=113 Identities=18% Similarity=0.258 Sum_probs=81.9
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
...+.+.+||++|++.++..|..++++++++|+|+|++ +.+.+.....|+..+.... ..+.|+++++||
T Consensus 46 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK 114 (159)
T cd00154 46 GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDIT----------NRESFENLDKWLKELKEYA-PENIPIILVGNK 114 (159)
T ss_pred CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEc
Confidence 34568899999999999999999999999999999985 2344555555665555432 246899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+...+. ...++..++... ..+.++++||+++.+|+++|+.+
T Consensus 115 ~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 115 IDLEDQRQ---------------------VSTEEAQQFAKE----------------NGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred cccccccc---------------------ccHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHHH
Confidence 99862110 123344443322 12567889999999999999887
Q ss_pred H
Q 016253 378 D 378 (392)
Q Consensus 378 ~ 378 (392)
.
T Consensus 158 ~ 158 (159)
T cd00154 158 A 158 (159)
T ss_pred h
Confidence 5
No 87
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.65 E-value=8.9e-16 Score=134.01 Aligned_cols=130 Identities=22% Similarity=0.440 Sum_probs=92.0
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|+....+ ..+++.+++|||+|++.++.+|..||++++++|||+|.+ +..++..+..++..
T Consensus 30 ~~t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~~~~~~~~~~~~ 93 (162)
T cd04157 30 VPTVGFNVESF------EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSS----------DRLRLVVVKDELEL 93 (162)
T ss_pred cCccccceEEE------EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCC----------cHHHHHHHHHHHHH
Confidence 35556555555 556789999999999999999999999999999999975 34556666677777
Q ss_pred HHcCCCC--CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcce
Q 016253 280 VLKQPCF--EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF 357 (392)
Q Consensus 280 i~~~~~~--~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~ 357 (392)
+.+.+.+ .++|+++++||+|+.++.. .++..+.+. .... ..+.+
T Consensus 94 ~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-----------------------~~~~~~~l~--~~~~---------~~~~~ 139 (162)
T cd04157 94 LLNHPDIKHRRVPILFFANKMDLPDALT-----------------------AVKITQLLG--LENI---------KDKPW 139 (162)
T ss_pred HHcCcccccCCCCEEEEEeCccccCCCC-----------------------HHHHHHHhC--Cccc---------cCceE
Confidence 7765543 4799999999999864310 011111100 0000 12345
Q ss_pred eEEEEEeeCchhHHHHHHHHHH
Q 016253 358 KIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 358 ~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
.++.|||+++.||+++|+.+.+
T Consensus 140 ~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 140 HIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEeeCCCCCchHHHHHHHhc
Confidence 6788999999999999998754
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.64 E-value=5.1e-15 Score=137.44 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=82.0
Q ss_pred cccccceeEEecCCccccccchhcccc-ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFE-GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~-~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+||++||+ ......|+. +++++|+|+|++ +..++....+|+..+.......++|++|++
T Consensus 46 ~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~t----------d~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 46 DGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVT----------DRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred CCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4455789999999998 233345667 999999999985 344556666666666554444579999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+.+++. ...+++.++.. . ..+.+++|||+++.||+++|+
T Consensus 114 NK~Dl~~~~~---------------------v~~~~~~~~a~-~---------------~~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 114 NKSDLARSRE---------------------VSVQEGRACAV-V---------------FDCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred EChhccccce---------------------ecHHHHHHHHH-H---------------cCCeEEEecCCCCCCHHHHHH
Confidence 9999864321 11233333211 1 124467899999999999999
Q ss_pred HHHHHHH
Q 016253 376 LVDETLR 382 (392)
Q Consensus 376 ~v~~~Il 382 (392)
.+.+.+.
T Consensus 157 ~l~~~~~ 163 (221)
T cd04148 157 GIVRQIR 163 (221)
T ss_pred HHHHHHH
Confidence 9998886
No 89
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.4e-16 Score=135.62 Aligned_cols=184 Identities=20% Similarity=0.264 Sum_probs=131.9
Q ss_pred HHHHhcCChHHHHHHHccCCCCCCcchH--HHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCcccccccee
Q 016253 147 DIETLWADPAIQETYAHGNELQLPDCAN--YFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYR 224 (392)
Q Consensus 147 ~i~~LW~d~~iq~~~~~~~~~~l~d~~~--yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~ 224 (392)
.+..||+--.-++.|.- -+-=+|+++ -||+..+..+...|.--.-+-. .+|+|.+.-.+ +.....+.
T Consensus 4 l~~gl~~~~~~Ke~y~v--lIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki---~~tvgLnig~i------~v~~~~l~ 72 (197)
T KOG0076|consen 4 LMSGLYKYMFKKEDYSV--LILGLDNAGKTTFLEALKTDFSKAYGGLNPSKI---TPTVGLNIGTI------EVCNAPLS 72 (197)
T ss_pred HHHHHHHHHhhhhhhhh--eeeccccCCchhHHHHHHHHHHhhhcCCCHHHe---ecccceeecce------eeccceeE
Confidence 35667754332333311 011256665 6888888888777765431111 68999887777 66678999
Q ss_pred EEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcccc
Q 016253 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKK 304 (392)
Q Consensus 225 i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~k 304 (392)
+||.|||++-|++|..||..+|+|||++|. .+.+||+++...|++++.+....++|+++.+||+|+.++.
T Consensus 73 fwdlgGQe~lrSlw~~yY~~~H~ii~viDa----------~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~ 142 (197)
T KOG0076|consen 73 FWDLGGQESLRSLWKKYYWLAHGIIYVIDA----------TDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM 142 (197)
T ss_pred EEEcCChHHHHHHHHHHHHHhceeEEeecC----------CCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh
Confidence 999999999999999999999999999995 6789999999999999999999999999999999986541
Q ss_pred ccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHh
Q 016253 305 VLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 305 l~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
- . .+++..+.- .+.. ..|...+.-+||.+|++|++...++...+-++
T Consensus 143 ~-~-------------------~El~~~~~~-----~e~~--------~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 143 E-A-------------------AELDGVFGL-----AELI--------PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred h-H-------------------HHHHHHhhh-----hhhc--------CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 1 0 111111110 1111 23445555689999999999998888777554
No 90
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.64 E-value=4.1e-15 Score=132.70 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=90.8
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
.+.+++||++|++.++..|..++.+++++++|+|++ +...+.....++..+.+.....+.|++|++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVT----------SRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchh
Confidence 457899999999999999999999999999999985 4556677788888888765556789999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+...+. ...++...+. +. ...+++.+||+++.+|.++|..+.+
T Consensus 118 l~~~~~---------------------~~~~~~~~~~-~~---------------~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 118 LHTQRQ---------------------VSTEEGKELA-ES---------------WGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred hhhcCc---------------------cCHHHHHHHH-HH---------------cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 854211 0111221211 11 0145678999999999999999999
Q ss_pred HHHHhhh
Q 016253 380 TLRRRHL 386 (392)
Q Consensus 380 ~Il~~~l 386 (392)
.+.+.+.
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 8876543
No 91
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=2.6e-15 Score=135.83 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=96.3
Q ss_pred cCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccch
Q 016253 185 DANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 264 (392)
Q Consensus 185 ~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~ 264 (392)
.+.|.||..|.++. ...+ ++..+.+++|||+|+++++..|..||++++++|+|+|++
T Consensus 25 ~~~~~~t~~~~~~~--------~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~--------- 81 (190)
T cd04144 25 VETYDPTIEDSYRK--------QVVV------DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSIT--------- 81 (190)
T ss_pred CccCCCchHhhEEE--------EEEE------CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECC---------
Confidence 35677887654321 1223 455678999999999999999999999999999999985
Q ss_pred hhhhhHHHHHHHHHHHHcC--CCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 265 EQKNRMMETKELFDWVLKQ--PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 265 ~~~nrl~es~~~f~~i~~~--~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+.+++.....|+..+.+. ....++|++|++||+|+..++. ...+++.++.. .
T Consensus 82 -~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~---------------------v~~~~~~~~~~-~--- 135 (190)
T cd04144 82 -SRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE---------------------VSTEEGAALAR-R--- 135 (190)
T ss_pred -CHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc---------------------cCHHHHHHHHH-H---
Confidence 333444444444444322 2235789999999999864321 11223333311 1
Q ss_pred HhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhh
Q 016253 343 LYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHL 386 (392)
Q Consensus 343 ~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l 386 (392)
..+.++++||+++.||+++|..+.+.+...+.
T Consensus 136 ------------~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 136 ------------LGCEFIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred ------------hCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 12456889999999999999999998875543
No 92
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.64 E-value=9.6e-16 Score=133.99 Aligned_cols=129 Identities=20% Similarity=0.342 Sum_probs=90.3
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
||+|.....+ +..++++++|||+|++.++..|..|+++++++|+|+|+++ ..++.....++..+
T Consensus 29 ~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~ 92 (158)
T cd04151 29 PTIGFNVETV------TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD----------RDRLGTAKEELHAM 92 (158)
T ss_pred CccCcCeEEE------EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 4555544445 5567899999999999999999999999999999999853 33455555666666
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
++.....+.|++|++||+|+.+.. ...+..+.+. . ... ..+...++
T Consensus 93 ~~~~~~~~~piiiv~nK~Dl~~~~-----------------------~~~~i~~~~~-----~---~~~---~~~~~~~~ 138 (158)
T cd04151 93 LEEEELKGAVLLVFANKQDMPGAL-----------------------SEAEISEKLG-----L---SEL---KDRTWSIF 138 (158)
T ss_pred HhchhhcCCcEEEEEeCCCCCCCC-----------------------CHHHHHHHhC-----c---ccc---CCCcEEEE
Confidence 665555679999999999986421 0111111110 0 000 12235678
Q ss_pred EEEeeCchhHHHHHHHHHH
Q 016253 361 RTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 361 ~TsA~d~~nI~~vF~~v~~ 379 (392)
++||+++.||+++|+.+.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999998865
No 93
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=3.9e-15 Score=137.23 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=91.4
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
+..+.+++|||+||+.++..|..|+++++++|+|+|++ +.+++.+...|+..+........+|++|++||
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK 118 (211)
T cd04111 49 GVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDIT----------NRESFEHVHDWLEEARSHIQPHRPVFILVGHK 118 (211)
T ss_pred CCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEc
Confidence 44578999999999999999999999999999999984 45566777777777765433456889999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
.|+.+.+. ...+++.++.. . ..+.+++|||+++.||+++|+.+
T Consensus 119 ~Dl~~~~~---------------------v~~~~~~~~~~-~---------------~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 119 CDLESQRQ---------------------VTREEAEKLAK-D---------------LGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred cccccccc---------------------cCHHHHHHHHH-H---------------hCCEEEEEeCCCCCCHHHHHHHH
Confidence 99865321 12233333321 1 12567899999999999999999
Q ss_pred HHHHHHh
Q 016253 378 DETLRRR 384 (392)
Q Consensus 378 ~~~Il~~ 384 (392)
.+.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9988655
No 94
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.64 E-value=3.1e-15 Score=132.37 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=87.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+.+|||+||+.+...|.++|++++++|+|+|++ +.+++.....|+..+.+.. .++|+++++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~--~~~piiiv~n 112 (166)
T cd00877 45 NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVT----------SRVTYKNVPNWHRDLVRVC--GNIPIVLCGN 112 (166)
T ss_pred CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC--CCCcEEEEEE
Confidence 456789999999999999999999999999999999984 4455555556666665532 2799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.++.+ . .++.++. . .+.+.+++|||++++||+++|+.
T Consensus 113 K~Dl~~~~~----------------------~-~~~~~~~-----~-----------~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 113 KVDIKDRKV----------------------K-AKQITFH-----R-----------KKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred chhcccccC----------------------C-HHHHHHH-----H-----------HcCCEEEEEeCCCCCChHHHHHH
Confidence 999863211 0 1112221 1 12356789999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+++
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9998875
No 95
>PTZ00369 Ras-like protein; Provisional
Probab=99.64 E-value=4.1e-15 Score=134.41 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=90.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++.+|..|+++++++|+|+|++ +..++.+...|+..+.+.....++|+++++|
T Consensus 49 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s----------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 118 (189)
T PTZ00369 49 DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSIT----------SRSSFEEIASFREQILRVKDKDRVPMILVGN 118 (189)
T ss_pred CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 556678999999999999999999999999999999985 4445666666666665543345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.++... ..+.+++|||+++.||.++|..
T Consensus 119 K~Dl~~~~~---------------------i~~~~~~~~~~~----------------~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 119 KCDLDSERQ---------------------VSTGEGQELAKS----------------FGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------hCCEEEEeeCCCCCCHHHHHHH
Confidence 999854211 122334443211 1145679999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+.+.
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99888754
No 96
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.64 E-value=2.4e-15 Score=139.68 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=102.3
Q ss_pred hcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccc
Q 016253 184 SDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFE 263 (392)
Q Consensus 184 ~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e 263 (392)
+.++|.||..+.+. ....+ +.+.+.+.||||+||+.++.+|+.||++++++|+|||++
T Consensus 26 f~~~y~pTi~~~~~--------~~~~~------~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis-------- 83 (222)
T cd04173 26 YPGSYVPTVFENYT--------ASFEI------DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDIS-------- 83 (222)
T ss_pred CCCccCCccccceE--------EEEEE------CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECC--------
Confidence 34578888865431 11223 556789999999999999999999999999999999985
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHH
Q 016253 264 DEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 343 (392)
Q Consensus 264 ~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~ 343 (392)
+..+++.....|...+.. ...++|++|++||+|+....-....+.. .. .-+...+++..+..+.
T Consensus 84 --~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~-----~~----~~pIs~e~g~~~ak~~---- 147 (222)
T cd04173 84 --RPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSK-----QR----LIPVTHEQGTVLAKQV---- 147 (222)
T ss_pred --CHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhh-----cc----CCccCHHHHHHHHHHc----
Confidence 456666766656544433 3357999999999999653210000000 00 0013445565553221
Q ss_pred hhccCCCCCCCcceeEEEEEeeCchh-HHHHHHHHHHHHHHh
Q 016253 344 YFQSTAPDRVDRVFKIYRTTALDPKL-VKKTFKLVDETLRRR 384 (392)
Q Consensus 344 ~~~~~~~~~~~r~~~~~~TsA~d~~n-I~~vF~~v~~~Il~~ 384 (392)
.-+.+++|||++++| |+++|..+....+.+
T Consensus 148 -----------~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 148 -----------GAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred -----------CCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 114678999999986 999999999887754
No 97
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=4.6e-16 Score=132.67 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=92.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
......+.||||+||++|..+-+.||++.+++++|||++ +..+++....|..++-.. .-..+.+++|+|
T Consensus 58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDIT----------DrdSFqKVKnWV~Elr~m-lGnei~l~IVGN 126 (218)
T KOG0088|consen 58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDIT----------DRDSFQKVKNWVLELRTM-LGNEIELLIVGN 126 (218)
T ss_pred ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEecc----------chHHHHHHHHHHHHHHHH-hCCeeEEEEecC
Confidence 456788999999999999999999999999999999995 556666666666655432 223578999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+||.+++- ...++|..|....- -.++.|||+++.+|.++|+.
T Consensus 127 KiDLEeeR~---------------------Vt~qeAe~YAesvG----------------A~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 127 KIDLEEERQ---------------------VTRQEAEAYAESVG----------------ALYMETSAKDNVGISELFES 169 (218)
T ss_pred cccHHHhhh---------------------hhHHHHHHHHHhhc----------------hhheecccccccCHHHHHHH
Confidence 999977643 34566666644321 12357999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+...++..
T Consensus 170 Lt~~MiE~ 177 (218)
T KOG0088|consen 170 LTAKMIEH 177 (218)
T ss_pred HHHHHHHH
Confidence 88777643
No 98
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.64 E-value=1.5e-15 Score=135.37 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=93.5
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
||+|.+...+ ....+.+.+||++|++.++..|..||++++++|||+|.+ +.+++.++..++..+
T Consensus 45 ~t~~~~~~~~------~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s----------~~~~~~~~~~~l~~~ 108 (174)
T cd04153 45 PTIGSNVEEI------VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST----------DRERLPLTKEELYKM 108 (174)
T ss_pred CccccceEEE------EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHH
Confidence 4455444445 455789999999999999999999999999999999974 345677777888888
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
+++....++|+++++||+|+.+. + +.++..+.+... . . ..+.+.++
T Consensus 109 ~~~~~~~~~p~viv~NK~Dl~~~-~----------------------~~~~i~~~l~~~--~------~---~~~~~~~~ 154 (174)
T cd04153 109 LAHEDLRKAVLLVLANKQDLKGA-M----------------------TPAEISESLGLT--S------I---RDHTWHIQ 154 (174)
T ss_pred HhchhhcCCCEEEEEECCCCCCC-C----------------------CHHHHHHHhCcc--c------c---cCCceEEE
Confidence 87666678999999999998642 1 111111111000 0 0 12346678
Q ss_pred EEEeeCchhHHHHHHHHHH
Q 016253 361 RTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 361 ~TsA~d~~nI~~vF~~v~~ 379 (392)
.+||++++||+++|+.+.+
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 8999999999999998753
No 99
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.63 E-value=3.1e-15 Score=133.64 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=97.3
Q ss_pred hcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccc
Q 016253 184 SDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFE 263 (392)
Q Consensus 184 ~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e 263 (392)
+.++|.||..|... ....+ +.+.+.+++|||+||+.++.+|..||++++++|+|+|++
T Consensus 26 f~~~~~~t~~~~~~--------~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~-------- 83 (174)
T cd01871 26 FPGEYIPTVFDNYS--------ANVMV------DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV-------- 83 (174)
T ss_pred CCCcCCCcceeeeE--------EEEEE------CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECC--------
Confidence 34678888765331 11223 556678999999999999999999999999999999985
Q ss_pred hhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 264 DEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 264 ~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+.+++.+... |+..+... ..++|++|++||+|+.+.+.....+... . .-....+++.++..+.
T Consensus 84 --~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~--~-------~~~v~~~~~~~~~~~~--- 147 (174)
T cd01871 84 --SPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEK--K-------LTPITYPQGLAMAKEI--- 147 (174)
T ss_pred --CHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhc--c-------CCCCCHHHHHHHHHHc---
Confidence 4455666543 44444332 2479999999999996543211010000 0 0013455666553321
Q ss_pred HhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 343 LYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 343 ~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
..+.+++|||++++||+++|+.+...
T Consensus 148 ------------~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 148 ------------GAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ------------CCcEEEEecccccCCHHHHHHHHHHh
Confidence 11456799999999999999988753
No 100
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.63 E-value=5.4e-15 Score=136.52 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=86.1
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC--CCCCceEEEEee
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFMLFLN 296 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~--~~~~~~iiL~~N 296 (392)
..+.++||||+||+.++.+|..|+++++++|+|+|++ +.+++.....|+..+.... ...++|++|++|
T Consensus 48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t----------~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVT----------NSQSFENLEDWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhccccCCCceEEEEEE
Confidence 4678999999999999999999999999999999985 3444555545555444321 124578999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+.+. ...+++.++... ..+.++++||++++||+++|+.
T Consensus 118 K~DL~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 118 KTDLEHNRT---------------------VKDDKHARFAQA----------------NGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999964321 112233333211 1245678999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988764
No 101
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.63 E-value=6.3e-15 Score=131.07 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=86.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+++|||+||+.++.+|..||++++++++|+|++ +...+.....|+..+.+.....++|+++++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iilVgn 114 (170)
T cd04108 45 LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLT----------DVASLEHTRQWLEDALKENDPSSVLLFLVGT 114 (170)
T ss_pred CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 445678999999999999999999999999999999984 3445555566676665543344688999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+..+.- . . ...+++.++..+ ....++++||+++.||+++|+.
T Consensus 115 K~Dl~~~~~----~--------------~-~~~~~~~~~~~~----------------~~~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 115 KKDLSSPAQ----Y--------------A-LMEQDAIKLAAE----------------MQAEYWSVSALSGENVREFFFR 159 (170)
T ss_pred ChhcCcccc----c--------------c-ccHHHHHHHHHH----------------cCCeEEEEECCCCCCHHHHHHH
Confidence 999853311 0 0 112233333211 1134578999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+...+.
T Consensus 160 l~~~~~ 165 (170)
T cd04108 160 VAALTF 165 (170)
T ss_pred HHHHHH
Confidence 988764
No 102
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=1.5e-14 Score=127.36 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=79.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+.+||++|++.++..|..|+..++++++|+|+++ .+++.....|+..+.. ....++|+++++|
T Consensus 52 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~-~~~~~~~~i~v~N 120 (169)
T cd04114 52 KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQ-YANNKVITILVGN 120 (169)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hCCCCCeEEEEEE
Confidence 4445678999999999999999999999999999999852 2333333333333321 1123689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+...+- ...+. .+.|.+. ....++.+||+++.|++++|+.
T Consensus 121 K~D~~~~~~---------------------i~~~~-----~~~~~~~-----------~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 121 KIDLAERRE---------------------VSQQR-----AEEFSDA-----------QDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred Ccccccccc---------------------cCHHH-----HHHHHHH-----------cCCeEEEeeCCCCCCHHHHHHH
Confidence 999854211 00111 1222221 1255789999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98765
No 103
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=3.6e-15 Score=135.86 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=83.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~ 295 (392)
+++.+++++|||+||+. .....||++++++|+|+|++ +..++++... |...+... ..++|++|++
T Consensus 62 ~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t----------~~~Sf~~~~~~w~~~i~~~--~~~~piilvg 127 (195)
T cd01873 62 DGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIA----------SPNSLRNVKTMWYPEIRHF--CPRVPVILVG 127 (195)
T ss_pred CCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECC----------ChhHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 56678999999999975 35567999999999999984 4555655543 44444332 2468999999
Q ss_pred eCCCCccccccccCccccccccccccCC-CCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVS-TGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~-~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
||+||............ -+-..+.. ......+++.+|..+ ..+.+++|||++++||+++|
T Consensus 128 NK~DL~~~~~~~~~~~~---~~~~~~~~~~~~V~~~e~~~~a~~----------------~~~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 128 CKLDLRYADLDEVNRAR---RPLARPIKNADILPPETGRAVAKE----------------LGIPYYETSVVTQFGVKDVF 188 (195)
T ss_pred Echhccccccchhhhcc---cccccccccCCccCHHHHHHHHHH----------------hCCEEEEcCCCCCCCHHHHH
Confidence 99998642110000000 00000000 011456667666432 12567899999999999999
Q ss_pred HHHHH
Q 016253 375 KLVDE 379 (392)
Q Consensus 375 ~~v~~ 379 (392)
+.+.+
T Consensus 189 ~~~~~ 193 (195)
T cd01873 189 DNAIR 193 (195)
T ss_pred HHHHH
Confidence 98875
No 104
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.9e-15 Score=125.54 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=92.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
.++.++++||||+||++||....+||+++.+.+.|+|++. -.+.|.+..|+.--+.+ ..+++.|+|++|
T Consensus 56 sgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr-------rstynhlsswl~dar~l----tnpnt~i~lign 124 (215)
T KOG0097|consen 56 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR-------RSTYNHLSSWLTDARNL----TNPNTVIFLIGN 124 (215)
T ss_pred cCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh-------hhhhhhHHHHHhhhhcc----CCCceEEEEecc
Confidence 7889999999999999999999999999999999999852 23445444443332322 335789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.||..++- ..++++.+|..+ ..+.+.+.||++|+||+.+|-.
T Consensus 125 kadle~qrd---------------------v~yeeak~faee----------------ngl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 125 KADLESQRD---------------------VTYEEAKEFAEE----------------NGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred hhhhhhccc---------------------CcHHHHHHHHhh----------------cCeEEEEecccccCcHHHHHHH
Confidence 999965421 456777776433 1366778999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
.++.|.++
T Consensus 168 ~akkiyqn 175 (215)
T KOG0097|consen 168 TAKKIYQN 175 (215)
T ss_pred HHHHHHHh
Confidence 88888764
No 105
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.61 E-value=8.2e-15 Score=128.13 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=91.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.+...+..++++++++|+|+|++ +.+++.....|+..+..... .++|++|++|
T Consensus 44 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~----------~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~ 112 (162)
T PF00071_consen 44 DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVT----------DEESFENLKKWLEEIQKYKP-EDIPIIVVGN 112 (162)
T ss_dssp TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETT----------BHHHHHTHHHHHHHHHHHST-TTSEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccc-ccccceeeec
Confidence 567789999999999999999999999999999999984 55666666666666554332 4689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+++. .+.+++.+|..+ ..+.++++||+++.||.++|..
T Consensus 113 K~D~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 113 KSDLSDERE---------------------VSVEEAQEFAKE----------------LGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTTGGGGSS---------------------SCHHHHHHHHHH----------------TTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccc---------------------chhhHHHHHHHH----------------hCCEEEEEECCCCCCHHHHHHH
Confidence 999875211 234555555422 1267789999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.|+
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 106
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.61 E-value=1.4e-14 Score=126.05 Aligned_cols=135 Identities=14% Similarity=0.168 Sum_probs=94.1
Q ss_pred cCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccch
Q 016253 185 DANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 264 (392)
Q Consensus 185 ~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~ 264 (392)
...|.||..|... ....+ +...+.+++||++|++.++.+|..|+++++++++|+|++
T Consensus 27 ~~~~~~t~~~~~~--------~~~~~------~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~--------- 83 (162)
T cd04138 27 VDEYDPTIEDSYR--------KQVVI------DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN--------- 83 (162)
T ss_pred cCCcCCcchheEE--------EEEEE------CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECC---------
Confidence 3567788765431 11223 445567899999999999999999999999999999984
Q ss_pred hhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHh
Q 016253 265 EQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELY 344 (392)
Q Consensus 265 ~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~ 344 (392)
+...+.+...|+..+.......+.|++|++||+|+.+... ...++..+...
T Consensus 84 -~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~----------------------~~~~~~~~~~~------ 134 (162)
T cd04138 84 -SRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV----------------------SSRQGQDLAKS------ 134 (162)
T ss_pred -CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee----------------------cHHHHHHHHHH------
Confidence 3344555555666665543345789999999999864211 12233333211
Q ss_pred hccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 345 FQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 345 ~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
..+.+++|||+++.||+++|+.+.+.+
T Consensus 135 ----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 135 ----------YGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ----------hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 124567899999999999999987654
No 107
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.60 E-value=5.8e-15 Score=133.00 Aligned_cols=131 Identities=18% Similarity=0.285 Sum_probs=90.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
...++.+++||++|++.++..|..|+++++++|+|+|++ +.+++.+...++..++......+.|+++++|
T Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~----------~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N 128 (190)
T cd00879 59 TIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAA----------DPERFQESKEELDSLLSDEELANVPFLILGN 128 (190)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence 334578999999999999999999999999999999985 3456667778888888766667799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+ + ..++..+++...-....+....+....+.+.++.|||++++||.++|+.
T Consensus 129 K~Dl~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~ 185 (190)
T cd00879 129 KIDLPGA-V----------------------SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRW 185 (190)
T ss_pred CCCCCCC-c----------------------CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHH
Confidence 9998532 1 1122222221100000000000000124467889999999999999999
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+...
T Consensus 186 l~~~ 189 (190)
T cd00879 186 LSQY 189 (190)
T ss_pred HHhh
Confidence 8754
No 108
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.60 E-value=1.4e-14 Score=127.31 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=83.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+++|||+||+.++..|..|+++++++|+|+|+++ ...+.+...|+..+.+. ..+.|+++++|
T Consensus 45 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~ivv~n 112 (161)
T cd04124 45 EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR----------KITYKNLSKWYEELREY--RPEIPCIVVAN 112 (161)
T ss_pred CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEE
Confidence 5667899999999999999999999999999999999852 23333444455555332 23689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+ . .+++.++. . ...+.++.+||+++.||+++|+.
T Consensus 113 K~Dl~~~-~-----------------------~~~~~~~~-----~-----------~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 113 KIDLDPS-V-----------------------TQKKFNFA-----E-----------KHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred CccCchh-H-----------------------HHHHHHHH-----H-----------HcCCeEEEEeCCCCCCHHHHHHH
Confidence 9998321 0 11222221 1 01245678999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+++.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99887753
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.60 E-value=2.2e-14 Score=124.49 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=86.7
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
..+.+++||++|++.+...|..++++++++++|+|++ +...+.+...++..+.+......+|+++++||+
T Consensus 45 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 114 (160)
T cd00876 45 ETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSIT----------DRESFEEIKGYREQILRVKDDEDIPIVLVGNKC 114 (160)
T ss_pred EEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECC
Confidence 3468899999999999999999999999999999974 344566667777777664433579999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+...+- ...+++..+.... .+.++.+||+++.||+++|+.+.
T Consensus 115 D~~~~~~---------------------~~~~~~~~~~~~~----------------~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 115 DLENERQ---------------------VSKEEGKALAKEW----------------GCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred cccccce---------------------ecHHHHHHHHHHc----------------CCcEEEeccCCCCCHHHHHHHHH
Confidence 9875211 1233444443211 14567899999999999999987
Q ss_pred HHH
Q 016253 379 ETL 381 (392)
Q Consensus 379 ~~I 381 (392)
+.|
T Consensus 158 ~~i 160 (160)
T cd00876 158 REI 160 (160)
T ss_pred hhC
Confidence 653
No 110
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.60 E-value=1e-14 Score=128.25 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=85.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+++.+.+++||++||+. ..|+++++++++|+|+ ++.+++++...|+..+.+.....++|++|++|
T Consensus 43 ~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~----------~~~~sf~~~~~~~~~i~~~~~~~~~piilvgn 107 (158)
T cd04103 43 DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL----------ENEASFQTVYNLYHQLSSYRNISEIPLILVGT 107 (158)
T ss_pred CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 45567899999999975 3578999999999998 46788888888888887765556799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+...... + ...+++.++..+ .+.+.+++|||+++.||+++|..
T Consensus 108 K~Dl~~~~~~--~-----------------v~~~~~~~~~~~---------------~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 108 QDAISESNPR--V-----------------IDDARARQLCAD---------------MKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred HHHhhhcCCc--c-----------------cCHHHHHHHHHH---------------hCCCcEEEEecCCCCCHHHHHHH
Confidence 9998432100 0 223344444221 11256789999999999999998
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8753
No 111
>PLN00023 GTP-binding protein; Provisional
Probab=99.59 E-value=9.4e-15 Score=141.23 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=59.1
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC-----------CC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-----------FE 287 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~-----------~~ 287 (392)
+.+.++||||+||++++.+|..||++++++|+|+|++ +..++.+...|++.+..... ..
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDIT----------dr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~ 150 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLS----------QRRTKTSLQKWASEVAATGTFSAPLGSGGPGGL 150 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 4578999999999999999999999999999999996 34445555556666654311 23
Q ss_pred CceEEEEeeCCCCccc
Q 016253 288 KTSFMLFLNKFDIFEK 303 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~ 303 (392)
++|++||+||+||..+
T Consensus 151 ~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 151 PVPYIVIGNKADIAPK 166 (334)
T ss_pred CCcEEEEEECcccccc
Confidence 6899999999999654
No 112
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=2.3e-14 Score=135.24 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=99.3
Q ss_pred cCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccch
Q 016253 185 DANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 264 (392)
Q Consensus 185 ~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~ 264 (392)
...|.||.+|... ..+.+ ++..+.++||||+|++.++.+|..|+.+++++|+|||++
T Consensus 26 ~~~y~pTi~d~~~--------k~~~i------~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~--------- 82 (247)
T cd04143 26 EEQYTPTIEDFHR--------KLYSI------RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLD--------- 82 (247)
T ss_pred CCCCCCChhHhEE--------EEEEE------CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCC---------
Confidence 3478888876421 12233 455678999999999999999999999999999999984
Q ss_pred hhhhhHHHHHHHHHHHHcCC--------CCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHH
Q 016253 265 EQKNRMMETKELFDWVLKQP--------CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFV 336 (392)
Q Consensus 265 ~~~nrl~es~~~f~~i~~~~--------~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i 336 (392)
+..++++...|++.+.... ...++|++|++||+|+..++. ...+++.+++
T Consensus 83 -~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~---------------------v~~~ei~~~~ 140 (247)
T cd04143 83 -NRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE---------------------VQRDEVEQLV 140 (247)
T ss_pred -CHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc---------------------cCHHHHHHHH
Confidence 4566777777777776542 235789999999999964211 1233333332
Q ss_pred HHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 337 KKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 337 ~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
.. ...+.+++|||+++.||+++|+.+....
T Consensus 141 ~~---------------~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 141 GG---------------DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred Hh---------------cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 21 1135678999999999999999998754
No 113
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=3.4e-14 Score=127.66 Aligned_cols=125 Identities=21% Similarity=0.195 Sum_probs=89.4
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEee
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~N 296 (392)
...+.+++|||+||+.++..|..++++++++|||+|++ +.+++++... |+..+... ..++|++|++|
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~n 113 (187)
T cd04132 46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD----------NPTSLDNVEDKWFPEVNHF--CPGTPIMLVGL 113 (187)
T ss_pred CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEe
Confidence 45678999999999999999999999999999999984 4455655544 44444322 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+..+.-.. .....+++.++.... ....+++|||+++.||+++|..
T Consensus 114 K~Dl~~~~~~~-----------------~~v~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 114 KTDLRKDKNLD-----------------RKVTPAQAESVAKKQ---------------GAFAYLECSAKTMENVEEVFDT 161 (187)
T ss_pred ChhhhhCcccc-----------------CCcCHHHHHHHHHHc---------------CCcEEEEccCCCCCCHHHHHHH
Confidence 99986542110 002234444443211 1125688999999999999999
Q ss_pred HHHHHHHhhh
Q 016253 377 VDETLRRRHL 386 (392)
Q Consensus 377 v~~~Il~~~l 386 (392)
+.+.++....
T Consensus 162 l~~~~~~~~~ 171 (187)
T cd04132 162 AIEEALKKEG 171 (187)
T ss_pred HHHHHHhhhh
Confidence 9999987643
No 114
>PLN03110 Rab GTPase; Provisional
Probab=99.58 E-value=2.7e-14 Score=132.06 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=87.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++||++++..|..|+++++++|+|+|++ +...+.....|+..+... ...++|+++++|
T Consensus 57 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piiiv~n 125 (216)
T PLN03110 57 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVQRWLRELRDH-ADSNIVIMMAGN 125 (216)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECC----------ChHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 456689999999999999999999999999999999985 334444445555555432 224789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+...+. ...+.+..+. .. ..+.+++|||+++.||+++|+.
T Consensus 126 K~Dl~~~~~---------------------~~~~~~~~l~-~~---------------~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 126 KSDLNHLRS---------------------VAEEDGQALA-EK---------------EGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred ChhcccccC---------------------CCHHHHHHHH-HH---------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999854311 1122222221 11 1266889999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+...+.+.
T Consensus 169 l~~~i~~~ 176 (216)
T PLN03110 169 ILLEIYHI 176 (216)
T ss_pred HHHHHHHH
Confidence 99988764
No 115
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.57 E-value=3.5e-14 Score=124.15 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=87.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+++|||+|++.++..|..|+++++++++|+|++ +..++.+...|+..+.+.....++|++|++|
T Consensus 46 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 46 DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVT----------DRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 455678999999999999999999999999999999985 3445566666676666543345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... ..+.++.+||+++.||+++|+.
T Consensus 116 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 116 KADLEHQRK---------------------VSREEGQELARK----------------LKIPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred Cccccccce---------------------ecHHHHHHHHHH----------------cCCcEEEeeCCCCCCHHHHHHH
Confidence 999864321 122333333221 1145678999999999999998
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04145 159 LVRVI 163 (164)
T ss_pred HHHhh
Confidence 87654
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.57 E-value=1.4e-14 Score=126.41 Aligned_cols=117 Identities=20% Similarity=0.342 Sum_probs=86.1
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
..+.+.+||++|++.++..|..|+++++++|||+|.+ +.+++.+...++..+...+...++|++|++||+
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~----------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 111 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS----------DEARLDESQKELKHILKNEHIKGVPVVLLANKQ 111 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHhchhhcCCCEEEEEECc
Confidence 4578999999999999999999999999999999974 344677788888888877666789999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+... . ..++....+. .... . ..+.+.++.|||++++||+++|+.+.
T Consensus 112 Dl~~~-~----------------------~~~~i~~~~~--~~~~-----~---~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 112 DLPGA-L----------------------TAEEITRRFK--LKKY-----C---SDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred ccccC-c----------------------CHHHHHHHcC--Cccc-----C---CCCcEEEEecccccCCChHHHHHHHh
Confidence 98532 1 0111111100 0000 0 11335677899999999999999875
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.57 E-value=1.1e-13 Score=121.90 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=82.4
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
...+.+++||++||+.+...+..+++.++++++|+|++ +..++.+....|...+... ..+.|+++++||
T Consensus 45 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK 113 (171)
T cd00157 45 GKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVD----------SPSSFENVKTKWIPEIRHY-CPNVPIILVGTK 113 (171)
T ss_pred CEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh-CCCCCEEEEEcc
Confidence 34567899999999999899999999999999999974 3344444444333332221 237999999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+....-.... . .+. ......+++.++.... +...++++||+++.+++++|+.+
T Consensus 114 ~Dl~~~~~~~~~------~-~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 114 IDLRDDENTLKK------L-EKG---KEPITPEEGEKLAKEI---------------GAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred HHhhhchhhhhh------c-ccC---CCccCHHHHHHHHHHh---------------CCeEEEEeecCCCCCHHHHHHHH
Confidence 998754321100 0 000 0002344444442221 12367889999999999999987
Q ss_pred HH
Q 016253 378 DE 379 (392)
Q Consensus 378 ~~ 379 (392)
.+
T Consensus 169 ~~ 170 (171)
T cd00157 169 IR 170 (171)
T ss_pred hh
Confidence 65
No 118
>PLN03108 Rab family protein; Provisional
Probab=99.57 E-value=5.7e-14 Score=129.30 Aligned_cols=120 Identities=14% Similarity=0.242 Sum_probs=90.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+.... ..+.|+++++|
T Consensus 51 ~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~----------~~~s~~~l~~~~~~~~~~~-~~~~piiiv~n 119 (210)
T PLN03108 51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHA-NANMTIMLIGN 119 (210)
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC----------cHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 556678999999999999999999999999999999985 3445555556666654432 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+|... ..+.++++||+++.||+++|..
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 120 KCDLAHRRA---------------------VSTEEGEQFAKE----------------HGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred CccCccccC---------------------CCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999865321 123344444321 1256789999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.++++
T Consensus 163 l~~~~~~~ 170 (210)
T PLN03108 163 TAAKIYKK 170 (210)
T ss_pred HHHHHHHH
Confidence 99988764
No 119
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.57 E-value=4e-14 Score=124.24 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=85.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..++++++++|+|+|++ +.+++.+...|+..+.... ..++|++|++|
T Consensus 48 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~n 116 (165)
T cd01868 48 DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KKQTFENVERWLKELRDHA-DSNIVIMLVGN 116 (165)
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 445578999999999999999999999999999999985 3344555556666554432 23689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+...+. ...++..++... ..+.++++||+++.||+.+|+.
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 117 KSDLRHLRA---------------------VPTEEAKAFAEK----------------NGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred Ccccccccc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999864321 122333333221 1255789999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 87654
No 120
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.56 E-value=5.9e-14 Score=123.62 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=81.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC--CCCCCceEEEE
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLF 294 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~--~~~~~~~iiL~ 294 (392)
+.+.+.+++|||+||+.++.+|..++++++++|+|+|++ +..++.+...|++.+... ....++|++|+
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 45 SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVT----------SKQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 445678999999999999999999999999999999985 333444444444433221 12357899999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
+||+|+.+.+. ...+++..+... ..+.++++||+++.||+++|
T Consensus 115 ~nK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 115 GNKCDESHKRE---------------------VSSNEGAACATE----------------WNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred EECccccccCe---------------------ecHHHHHHHHHH----------------hCCcEEEeecCCCCCHHHHH
Confidence 99999854210 112333333211 12456789999999999999
Q ss_pred HHHHH
Q 016253 375 KLVDE 379 (392)
Q Consensus 375 ~~v~~ 379 (392)
+.+.+
T Consensus 158 ~~l~~ 162 (165)
T cd04140 158 QELLN 162 (165)
T ss_pred HHHHh
Confidence 98764
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.55 E-value=5.9e-14 Score=122.31 Aligned_cols=130 Identities=21% Similarity=0.340 Sum_probs=97.4
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.+|+|+....+ ....+.+.+||++|++.++..|..++.+++++++|+|.+ +..++.++..++..
T Consensus 28 ~~t~~~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~----------~~~~~~~~~~~~~~ 91 (158)
T cd00878 28 IPTIGFNVETV------EYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS----------DRERIEEAKEELHK 91 (158)
T ss_pred CCCcCcceEEE------EECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 45566655555 556789999999999999999999999999999999974 45578888899999
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
++......+.|+++++||+|+.... ..++..+.+.... . ..+.+.+
T Consensus 92 ~~~~~~~~~~piiiv~nK~D~~~~~-----------------------~~~~~~~~~~~~~--------~---~~~~~~~ 137 (158)
T cd00878 92 LLNEEELKGVPLLIFANKQDLPGAL-----------------------SVSELIEKLGLEK--------I---LGRRWHI 137 (158)
T ss_pred HHhCcccCCCcEEEEeeccCCcccc-----------------------CHHHHHHhhChhh--------c---cCCcEEE
Confidence 8886556689999999999986431 1112222111110 0 1234678
Q ss_pred EEEEeeCchhHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.+||+++.|++++|+.+.+
T Consensus 138 ~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 138 QPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEeeCCCCCCHHHHHHHHhh
Confidence 89999999999999998764
No 122
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.55 E-value=5.4e-14 Score=124.52 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=89.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+||+.++..|..++++++++|+|+|++ +.+++++... |+..+... ..++|++|++
T Consensus 42 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 109 (174)
T smart00174 42 DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD----------SPASFENVKEKWYPEVKHF--CPNTPIILVG 109 (174)
T ss_pred CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh--CCCCCEEEEe
Confidence 455678999999999999999999999999999999984 4455555543 55555432 3479999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+......+. +.. ....+.+++.++.... ....++++||+++.||+++|+
T Consensus 110 nK~Dl~~~~~~~~~~~------~~~---~~~v~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~lf~ 165 (174)
T smart00174 110 TKLDLREDKSTLRELS------KQK---QEPVTYEQGEALAKRI---------------GAVKYLECSALTQEGVREVFE 165 (174)
T ss_pred cChhhhhChhhhhhhh------ccc---CCCccHHHHHHHHHHc---------------CCcEEEEecCCCCCCHHHHHH
Confidence 9999975422111110 000 0113345555443221 113467899999999999999
Q ss_pred HHHHHHHH
Q 016253 376 LVDETLRR 383 (392)
Q Consensus 376 ~v~~~Il~ 383 (392)
.+.+.+++
T Consensus 166 ~l~~~~~~ 173 (174)
T smart00174 166 EAIRAALN 173 (174)
T ss_pred HHHHHhcC
Confidence 99987753
No 123
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.54 E-value=4.8e-14 Score=121.56 Aligned_cols=130 Identities=18% Similarity=0.339 Sum_probs=91.2
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|+....+ ....+.+.+||++|++.+++.|..|+++++++++|+|+++ ...+.....++..
T Consensus 29 ~~t~~~~~~~~------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~ 92 (159)
T cd04159 29 IPTVGFNMRKV------TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD----------RTALEAAKNELHD 92 (159)
T ss_pred cCCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHH
Confidence 45555554444 4445789999999999999999999999999999999853 3345556667777
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+.......+.|+++++||+|+.++. ..++..+.+.. . .. ..+.+.+
T Consensus 93 ~~~~~~~~~~p~iiv~nK~D~~~~~-----------------------~~~~~~~~~~~--~------~~---~~~~~~~ 138 (159)
T cd04159 93 LLEKPSLEGIPLLVLGNKNDLPGAL-----------------------SVDELIEQMNL--K------SI---TDREVSC 138 (159)
T ss_pred HHcChhhcCCCEEEEEeCccccCCc-----------------------CHHHHHHHhCc--c------cc---cCCceEE
Confidence 7765555688999999999986431 11111111100 0 00 1234667
Q ss_pred EEEEeeCchhHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.+||+++.+|+++|+.+.+
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEeccCCChHHHHHHHhh
Confidence 88999999999999998764
No 124
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.54 E-value=7.5e-14 Score=127.45 Aligned_cols=122 Identities=14% Similarity=0.041 Sum_probs=85.5
Q ss_pred cccccceeEEecCCccccc----cc----hhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC--CC
Q 016253 217 KKSGEVYRLFDVGGQRNER----RK----WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CF 286 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r----~~----w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~--~~ 286 (392)
+++.+.+++|||+|++.+. .- +..++++++++|+|+|++ +..+++....|++.+.+.. ..
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~----------~~~S~~~~~~~~~~i~~~~~~~~ 114 (198)
T cd04142 45 SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDIC----------SPDSFHYVKLLRQQILETRPAGN 114 (198)
T ss_pred CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcccCC
Confidence 5556789999999976432 12 345689999999999984 4566666777777776643 24
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.++|++|++||+|+..++. ...+++.++..+. ..+.+++|||++
T Consensus 115 ~~~piiivgNK~Dl~~~~~---------------------~~~~~~~~~~~~~---------------~~~~~~e~Sak~ 158 (198)
T cd04142 115 KEPPIVVVGNKRDQQRHRF---------------------APRHVLSVLVRKS---------------WKCGYLECSAKY 158 (198)
T ss_pred CCCCEEEEEECcccccccc---------------------ccHHHHHHHHHHh---------------cCCcEEEecCCC
Confidence 5799999999999965422 1112222221111 125678999999
Q ss_pred chhHHHHHHHHHHHHHHh
Q 016253 367 PKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il~~ 384 (392)
|.||+++|+.+.+.++.+
T Consensus 159 g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 159 NWHILLLFKELLISATTR 176 (198)
T ss_pred CCCHHHHHHHHHHHhhcc
Confidence 999999999999888743
No 125
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.54 E-value=1e-13 Score=127.53 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=86.8
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
.+++.+|||+||+.++.+|..|+.+++++++|+|.+ ...++.+....|...+........|+++++||+|
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~----------~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDST----------LRESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecc----------cchhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 568999999999999999999999999999999973 4455666665555444433324689999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEee--CchhHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL--DPKLVKKTFKLV 377 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~--d~~nI~~vF~~v 377 (392)
++.+......+.. .. ...........+....- ..... ++.+||. .+.+|..+|...
T Consensus 123 l~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~------------~~~~~-~~~~s~~~~~~~~v~~~~~~~ 180 (219)
T COG1100 123 LFDEQSSSEEILN-----QL----NREVVLLVLAPKAVLPE------------VANPA-LLETSAKSLTGPNVNELFKEL 180 (219)
T ss_pred cccchhHHHHHHh-----hh----hcCcchhhhHhHHhhhh------------hcccc-eeEeecccCCCcCHHHHHHHH
Confidence 9876432111000 00 00011111111111000 01123 5789999 999999999999
Q ss_pred HHHHHHh
Q 016253 378 DETLRRR 384 (392)
Q Consensus 378 ~~~Il~~ 384 (392)
...+...
T Consensus 181 ~~~~~~~ 187 (219)
T COG1100 181 LRKLLEE 187 (219)
T ss_pred HHHHHHh
Confidence 8888643
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.54 E-value=2.8e-14 Score=128.49 Aligned_cols=125 Identities=18% Similarity=0.292 Sum_probs=89.8
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+++++.+||++|++.++++|.+||++++++|||+|.+ +..++.++..++..+++.....++|+++++||
T Consensus 58 ~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~----------~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK 127 (184)
T smart00178 58 IGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY----------DKERFAESKRELDALLSDEELATVPFLILGNK 127 (184)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECC----------cHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 34578999999999999999999999999999999985 44567777788888887666678999999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhh-ccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF-QSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~-~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
+|+..+ + +.++..+++. +.. .........+...++.+||+++++++++++.
T Consensus 128 ~Dl~~~-~----------------------~~~~i~~~l~-----l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~w 179 (184)
T smart00178 128 IDAPYA-A----------------------SEDELRYALG-----LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKW 179 (184)
T ss_pred ccccCC-C----------------------CHHHHHHHcC-----CCcccccccccCCceeEEEEeecccCCChHHHHHH
Confidence 998532 1 1111111110 000 0000000135678899999999999999999
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 180 l~~~ 183 (184)
T smart00178 180 LSQY 183 (184)
T ss_pred HHhh
Confidence 8653
No 127
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.54 E-value=9e-14 Score=121.53 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=85.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|.+++++++++|+|+|+++ ..++.....|+..+... ...++|++|++|
T Consensus 45 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iivv~n 113 (161)
T cd04113 45 GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN----------RTSFEALPTWLSDARAL-ASPNIVVILVGN 113 (161)
T ss_pred CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Confidence 4556789999999999999999999999999999999853 33444445555554322 224789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+.+. .+.+++..+... ..+.++++||+++.||.++|+.
T Consensus 114 K~D~~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~ 156 (161)
T cd04113 114 KSDLADQRE---------------------VTFLEASRFAQE----------------NGLLFLETSALTGENVEEAFLK 156 (161)
T ss_pred chhcchhcc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999864211 233444444321 1256789999999999999999
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd04113 157 CARS 160 (161)
T ss_pred HHHh
Confidence 8765
No 128
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.54 E-value=1.1e-13 Score=120.93 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=81.4
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
...+++++||++||+.++..|..|+++++++++|+|+++ .+++.....|...+.. ...++|+++++||
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK 115 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTD----------RESFEAIESWKEKVEA--ECGDIPMVLVQTK 115 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHH--hCCCCCEEEEEEC
Confidence 556899999999999999999999999999999999853 3344444444444432 2347899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
.|+..+.. ...+++..+... ..+.++.+||+++.|++++|+.+
T Consensus 116 ~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 116 IDLLDQAV---------------------ITNEEAEALAKR----------------LQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred hhcccccC---------------------CCHHHHHHHHHH----------------cCCeEEEEECCCCCCHHHHHHHH
Confidence 99864311 122333333211 12456789999999999999988
Q ss_pred HH
Q 016253 378 DE 379 (392)
Q Consensus 378 ~~ 379 (392)
..
T Consensus 159 ~~ 160 (162)
T cd04106 159 AE 160 (162)
T ss_pred HH
Confidence 65
No 129
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.53 E-value=1.6e-13 Score=123.96 Aligned_cols=124 Identities=15% Similarity=0.195 Sum_probs=88.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+++||++|++.++..|..||++++++|+|+|++ +..++.+...|++.+.+. ..++|++|++|
T Consensus 46 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~----------~~~s~~~~~~~~~~i~~~--~~~~piilv~n 113 (193)
T cd04118 46 GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLT----------DSSSFERAKFWVKELQNL--EEHCKIYLCGT 113 (193)
T ss_pred CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHhc--CCCCCEEEEEE
Confidence 556678999999999999999999999999999999985 334455555555555443 23689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+.+..-.. .....+++.+|... ..+.++.+||+++.||+.+|+.
T Consensus 114 K~Dl~~~~~~~-----------------~~v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 114 KSDLIEQDRSL-----------------RQVDFHDVQDFADE----------------IKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred ccccccccccc-----------------CccCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 99985431000 00122333343211 1144678999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+++..
T Consensus 161 i~~~~~~~~ 169 (193)
T cd04118 161 VAEDFVSRA 169 (193)
T ss_pred HHHHHHHhc
Confidence 999998653
No 130
>PLN03118 Rab family protein; Provisional
Probab=99.53 E-value=2.3e-13 Score=125.21 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=87.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC-CCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~-~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+||+.++.+|..|+++++++|+|+|++ +.+++.+...+|...+.. ....+.|++|++
T Consensus 58 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~----------~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~ 127 (211)
T PLN03118 58 GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVT----------RRETFTNLSDVWGKEVELYSTNQDCVKMLVG 127 (211)
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 455678999999999999999999999999999999985 344555555555444432 223468999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++. ...+++..+.. ...+.++++||+++.||+++|+
T Consensus 128 NK~Dl~~~~~---------------------i~~~~~~~~~~----------------~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 128 NKVDRESERD---------------------VSREEGMALAK----------------EHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred ECccccccCc---------------------cCHHHHHHHHH----------------HcCCEEEEEeCCCCCCHHHHHH
Confidence 9999864321 11223333221 1125578999999999999999
Q ss_pred HHHHHHHHh
Q 016253 376 LVDETLRRR 384 (392)
Q Consensus 376 ~v~~~Il~~ 384 (392)
.+.+.++..
T Consensus 171 ~l~~~~~~~ 179 (211)
T PLN03118 171 ELALKIMEV 179 (211)
T ss_pred HHHHHHHhh
Confidence 999888653
No 131
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.50 E-value=3.1e-13 Score=119.64 Aligned_cols=130 Identities=17% Similarity=0.202 Sum_probs=85.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..++++++++|+|+|++ +..++++....|...+... ..++|+++++|
T Consensus 44 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~----------~~~s~~~~~~~~~~~l~~~-~~~~piivv~n 112 (174)
T cd04135 44 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV----------NPASFQNVKEEWVPELKEY-APNVPYLLVGT 112 (174)
T ss_pred CCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhh-CCCCCEEEEeE
Confidence 445577899999999999999999999999999999984 3344444433232222221 45799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+......+. .+. .-....+++.++... + ....++++||+++.||+++|+.
T Consensus 113 K~Dl~~~~~~~~~~~------~~~---~~~v~~~~~~~~~~~-~--------------~~~~~~e~Sa~~~~gi~~~f~~ 168 (174)
T cd04135 113 QIDLRDDPKTLARLN------DMK---EKPVTVEQGQKLAKE-I--------------GAHCYVECSALTQKGLKTVFDE 168 (174)
T ss_pred chhhhcChhhHHHHh------hcc---CCCCCHHHHHHHHHH-c--------------CCCEEEEecCCcCCCHHHHHHH
Confidence 999865421110000 000 001344556555321 1 1124678999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 169 ~~~~~ 173 (174)
T cd04135 169 AILAI 173 (174)
T ss_pred HHHHh
Confidence 98876
No 132
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.49 E-value=4.9e-13 Score=118.77 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=93.0
Q ss_pred hcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccc
Q 016253 184 SDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFE 263 (392)
Q Consensus 184 ~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e 263 (392)
+..+|.||..|.+.. ...+ +...+.+++||++||+.++..|..|+++++++|||+|++
T Consensus 25 ~~~~~~~t~~~~~~~--------~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~-------- 82 (173)
T cd04130 25 YPTEYVPTAFDNFSV--------VVLV------DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVV-------- 82 (173)
T ss_pred CCCCCCCceeeeeeE--------EEEE------CCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECC--------
Confidence 345677776554311 1233 445678999999999999999999999999999999984
Q ss_pred hhhhhhHHHHHH-HHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 264 DEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 264 ~~~~nrl~es~~-~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+..++.+... |+..+... ..++|+++++||.|+..+.-....+ ..+ ..-....+++..|..+.
T Consensus 83 --~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~a~~~--- 146 (173)
T cd04130 83 --NPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQL------ARY---GEKPVSQSRAKALAEKI--- 146 (173)
T ss_pred --CHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHH------hhc---CCCCcCHHHHHHHHHHh---
Confidence 4445555543 44444432 2468999999999986431100000 000 00113445566554321
Q ss_pred HhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 343 LYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 343 ~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
....+++|||+++.||+++|+.+.
T Consensus 147 ------------~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 147 ------------GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred ------------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 112567899999999999998764
No 133
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.48 E-value=4.9e-13 Score=121.82 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=109.6
Q ss_pred cCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccch
Q 016253 185 DANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 264 (392)
Q Consensus 185 ~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~ 264 (392)
.++|.||++|..+ .+..+ ++..+.+.|+||+||+.+..+-..|.+++++.+.||++
T Consensus 29 ~~~y~ptied~y~--------k~~~v------~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysi---------- 84 (196)
T KOG0395|consen 29 VEDYDPTIEDSYR--------KELTV------DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSI---------- 84 (196)
T ss_pred ccccCCCccccce--------EEEEE------CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEEC----------
Confidence 3569999997542 12233 56667899999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHh
Q 016253 265 EQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELY 344 (392)
Q Consensus 265 ~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~ 344 (392)
++..++++...+++.|...+...++|++|+|||+|+...+. ...+++.++. .
T Consensus 85 td~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~---------------------V~~eeg~~la----~--- 136 (196)
T KOG0395|consen 85 TDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ---------------------VSEEEGKALA----R--- 136 (196)
T ss_pred CCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc---------------------cCHHHHHHHH----H---
Confidence 57888999999999997777777899999999999987532 2334444431 0
Q ss_pred hccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHH
Q 016253 345 FQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 345 ~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
.-.+.+++|||+...||+++|..+...+..
T Consensus 137 ---------~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 137 ---------SWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ---------hcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 112557899999999999999999998865
No 134
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.46 E-value=7.9e-13 Score=116.62 Aligned_cols=123 Identities=11% Similarity=0.125 Sum_probs=85.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+++.+|||+|++.++..|..++.+++++++|+|++ +..++......|...+.... .++|+++++|
T Consensus 43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~~-~~~pviiv~n 111 (166)
T cd01893 43 TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD----------RPSTLERIRTKWLPLIRRLG-VKVPIILVGN 111 (166)
T ss_pred cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 446688999999999999999999999999999999984 33444444333333332211 3789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+.+.. ...++...++.+.|... ..+++|||+++.|++++|..
T Consensus 112 K~Dl~~~~~~--------------------~~~~~~~~~~~~~~~~~-------------~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 112 KSDLRDGSSQ--------------------AGLEEEMLPIMNEFREI-------------ETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred chhcccccch--------------------hHHHHHHHHHHHHHhcc-------------cEEEEeccccccCHHHHHHH
Confidence 9999654221 01223333444443211 24568999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+++
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988764
No 135
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.45 E-value=1.1e-12 Score=115.40 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=81.9
Q ss_pred cccccceeEEecCCccc-cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC-CCCceEEEE
Q 016253 217 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEKTSFMLF 294 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~-~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~-~~~~~iiL~ 294 (392)
+.+.+++++||++|++. +...+..++++++++|+|+|++ +.+++.....|+..+..... ..++|++++
T Consensus 43 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~piilv 112 (165)
T cd04146 43 DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSIT----------DRSSFDEISQLKQLIREIKKRDREIPVILV 112 (165)
T ss_pred CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 55667899999999986 4567889999999999999985 33444444444444433221 347999999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc-hhHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP-KLVKKT 373 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~-~nI~~v 373 (392)
+||+|+.+.+. ...+++.++... ....++++||+++ .||+++
T Consensus 113 ~nK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 113 GNKADLLHYRQ---------------------VSTEEGEKLASE----------------LGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred EECCchHHhCc---------------------cCHHHHHHHHHH----------------cCCEEEEeCCCCCchhHHHH
Confidence 99999854311 122344443211 1134678999999 599999
Q ss_pred HHHHHHHHH
Q 016253 374 FKLVDETLR 382 (392)
Q Consensus 374 F~~v~~~Il 382 (392)
|..+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
No 136
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.44 E-value=1.4e-12 Score=118.71 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=86.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+++||++|+..++.+|..|+++++++|||+|++ +...+.+...|+..+.......++|++|++|
T Consensus 43 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 43 GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVD----------DPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 344578999999999999999999999999999999985 3445556666666666544445799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|.|+...+- . ...+++.+.... ...+.++++||+++.||+++|+.
T Consensus 113 K~Dl~~~~~---~-----------------v~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 113 KADSLEEER---Q-----------------VPAKDALSTVEL---------------DWNCGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred ccccccccc---c-----------------ccHHHHHHHHHh---------------hcCCcEEEecCCCCCCHHHHHHH
Confidence 999864210 0 111222221110 00134567999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 158 l~~~~~ 163 (198)
T cd04147 158 LLRQAN 163 (198)
T ss_pred HHHHhh
Confidence 988765
No 137
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.44 E-value=1.7e-12 Score=114.99 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=82.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+.+|||+|++.++..|..++.+++++++|+|+++ .+++......|...+.. ...+.|+++++|
T Consensus 45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~n 113 (175)
T cd01870 45 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGN 113 (175)
T ss_pred CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEee
Confidence 5566789999999999999999999999999999999852 33344433323222222 134789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.........+.. ..+. .....++.++.... ....+++|||+++.||+++|+.
T Consensus 114 K~Dl~~~~~~~~~i~~---~~~~------~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~lf~~ 169 (175)
T cd01870 114 KKDLRNDEHTRRELAK---MKQE------PVKPEEGRDMANKI---------------GAFGYMECSAKTKEGVREVFEM 169 (175)
T ss_pred ChhcccChhhhhhhhh---ccCC------CccHHHHHHHHHHc---------------CCcEEEEeccccCcCHHHHHHH
Confidence 9998643211000000 0000 02233444432210 1235678999999999999999
Q ss_pred HHHH
Q 016253 377 VDET 380 (392)
Q Consensus 377 v~~~ 380 (392)
+...
T Consensus 170 l~~~ 173 (175)
T cd01870 170 ATRA 173 (175)
T ss_pred HHHH
Confidence 8754
No 138
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.40 E-value=1e-12 Score=120.38 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=61.5
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC-------------
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP------------- 284 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~------------- 284 (392)
.+.+.+++|||+||+.++..|..||++++++|+|+|++ +.++++....|+.++.+..
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvt----------n~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLT----------NRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECc----------ChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 45688999999999999999999999999999999995 4455555556666665421
Q ss_pred -----CCCCceEEEEeeCCCCcccc
Q 016253 285 -----CFEKTSFMLFLNKFDIFEKK 304 (392)
Q Consensus 285 -----~~~~~~iiL~~NK~Dl~~~k 304 (392)
...++|++|++||.|+..++
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred cccccCCCCceEEEEEECccchhhc
Confidence 12468999999999997664
No 139
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.37 E-value=2.9e-12 Score=106.44 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=53.3
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.....+.+||++|++.+...|..++.+++++|+|+|+++. .+.+.+.+.+.++..+-. ...++|++|++||
T Consensus 47 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~-------~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK 117 (119)
T PF08477_consen 47 GDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDP-------ESLEYLSQLLKWLKNIRK--RDKNIPIILVGNK 117 (119)
T ss_dssp TEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGH-------HHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-
T ss_pred CCceEEEEEecCccceecccccchhhcCcEEEEEEcCCCh-------HHHHHHHHHHHHHHHHHc--cCCCCCEEEEEec
Confidence 3334589999999999999999899999999999998632 233444444555555543 2345999999999
Q ss_pred CC
Q 016253 298 FD 299 (392)
Q Consensus 298 ~D 299 (392)
.|
T Consensus 118 ~D 119 (119)
T PF08477_consen 118 SD 119 (119)
T ss_dssp TC
T ss_pred cC
Confidence 98
No 140
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.36 E-value=7.9e-12 Score=115.20 Aligned_cols=116 Identities=14% Similarity=0.180 Sum_probs=83.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+++|||+|++.++..|..|+.+++++|+|+|++ +..++.+...|+..+... ..+.|+++++|
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~--~~~~~i~lv~n 121 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVT----------SRITYKNVPNWHRDIVRV--CENIPIVLVGN 121 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 456789999999999999999999999999999999985 344555555566555432 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+.... .+...+. . .+.+.++.|||+++.+|+++|..
T Consensus 122 K~Dl~~~~~~-----------------------~~~~~~~-----~-----------~~~~~~~e~Sa~~~~~v~~~f~~ 162 (215)
T PTZ00132 122 KVDVKDRQVK-----------------------ARQITFH-----R-----------KKNLQYYDISAKSNYNFEKPFLW 162 (215)
T ss_pred CccCccccCC-----------------------HHHHHHH-----H-----------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 9998532110 1111211 1 11245678899999999998888
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
++..++.
T Consensus 163 ia~~l~~ 169 (215)
T PTZ00132 163 LARRLTN 169 (215)
T ss_pred HHHHHhh
Confidence 8887764
No 141
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.36 E-value=2.6e-12 Score=115.71 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=101.0
Q ss_pred hhcCCCCCCcccceeccceeeeeEEEeeccCCCcc-ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccc
Q 016253 183 LSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK-KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTL 261 (392)
Q Consensus 183 i~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~-~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l 261 (392)
.+..+|+||.-|-..+ . +.+ + ++.+.+.+|||+||+.|.++|+-.|.+++.++.|++++
T Consensus 28 ~fp~~yvPTVFdnys~---~-----v~V------~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~------ 87 (198)
T KOG0393|consen 28 AFPEEYVPTVFDNYSA---N-----VTV------DDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVV------ 87 (198)
T ss_pred cCcccccCeEEccceE---E-----EEe------cCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcC------
Confidence 3456899998654321 1 122 3 77889999999999999999999999999999999984
Q ss_pred cchhhhhhHHHH-HHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHH
Q 016253 262 FEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF 340 (392)
Q Consensus 262 ~e~~~~nrl~es-~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f 340 (392)
+..++++. .+|+-++... .+++|+||+|+|.||..+......+. ... ..+...+++.. +.+..
T Consensus 88 ----~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~-----~~~----~~~Vt~~~g~~-lA~~i 151 (198)
T KOG0393|consen 88 ----SPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQ-----RQG----LEPVTYEQGLE-LAKEI 151 (198)
T ss_pred ----ChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHH-----hcc----CCcccHHHHHH-HHHHh
Confidence 55666664 4566666543 36899999999999975421100110 000 01123333332 11111
Q ss_pred HHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHH
Q 016253 341 EELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 341 ~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
. -+.+.++||++..|++.+|+......+.
T Consensus 152 -------g-------a~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 152 -------G-------AVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred -------C-------cceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 1 1456799999999999999998887765
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.34 E-value=2.7e-11 Score=103.52 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=72.1
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
+.+.+||++|+..++..|..+++.+.++++++|++.+- ..+.+.. .+...+.+ ....+.|+++++||+|
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v---------~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D 119 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILV---------LDVEEILEKQTKEIIH-HAESNVPIILVGNKID 119 (161)
T ss_pred EEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeee---------hhhhhHhHHHHHHHHH-hcccCCcEEEEEEccc
Confidence 67899999999999999999999999999999986431 1112222 22222222 1122789999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
+....+. ......+... ....++.+||+++.+|.++|+.+.
T Consensus 120 ~~~~~~~---------------------------~~~~~~~~~~-----------~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 120 LRDAKLK---------------------------THVAFLFAKL-----------NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcchhh---------------------------HHHHHHHhhc-----------cCCceEEeecCCCCCHHHHHHHhh
Confidence 8643210 0011111111 113367899999999999998764
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.32 E-value=3e-11 Score=101.82 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=76.4
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
...+.+||++|+..+...|..++++++++++|+|++. ...+.....++..........++|+++++||+|
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD----------RESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 3578999999999999999999999999999999853 223333333322233333445799999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
+..... ..... ....+.. ...+.++.+||.++.++..+|+.+.
T Consensus 114 ~~~~~~---------------------~~~~~----~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 114 LPEERV---------------------VSEEE----LAEQLAK-----------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccccc---------------------hHHHH----HHHHHHh-----------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 864311 00111 0001111 1236678999999999999998875
No 144
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.32 E-value=4.3e-11 Score=109.19 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=66.4
Q ss_pred ceeEEecCCccc---------cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEE
Q 016253 222 VYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 292 (392)
Q Consensus 222 ~l~i~DvgGq~~---------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ii 292 (392)
.+.+|||+|+.. ++..| .++.+++++++|+|.++... .........++..+ ...+.|++
T Consensus 90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~-------~~~~~~~~~~l~~~----~~~~~~vi 157 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDY-------EEQIETVEKVLKEL----GAEDIPMI 157 (204)
T ss_pred eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCCh-------hhHHHHHHHHHHHc----CcCCCCEE
Confidence 688999999832 23333 24678999999999863221 11222333344333 23468999
Q ss_pred EEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHH
Q 016253 293 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 372 (392)
Q Consensus 293 L~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~ 372 (392)
+++||+|+..+.. .. .+ +. .....++++||+++.||+.
T Consensus 158 iV~NK~Dl~~~~~-----------------------~~---~~----~~------------~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 158 LVLNKIDLLDDEE-----------------------LE---ER----LE------------AGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEEEccccCChHH-----------------------HH---HH----hh------------cCCCceEEEEcCCCCCHHH
Confidence 9999999865311 00 00 00 1123467899999999999
Q ss_pred HHHHHHHH
Q 016253 373 TFKLVDET 380 (392)
Q Consensus 373 vF~~v~~~ 380 (392)
+|+.+.+.
T Consensus 196 l~~~L~~~ 203 (204)
T cd01878 196 LLEAIEEL 203 (204)
T ss_pred HHHHHHhh
Confidence 99988754
No 145
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=2.4e-12 Score=112.29 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=93.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+.+||+|||+.+..+...||+|+++.++|++- +++.+++..++|.+++.+. ...+|.+++-|
T Consensus 65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFST----------TDr~SFea~~~w~~kv~~e--~~~IPtV~vqN 132 (246)
T KOG4252|consen 65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFST----------TDRYSFEATLEWYNKVQKE--TERIPTVFVQN 132 (246)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEec----------ccHHHHHHHHHHHHHHHHH--hccCCeEEeec
Confidence 66778999999999999999999999999999999985 6788898899999999875 34799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+||.+.-. .+.+++-...+.... -.+.||++..-||..+|..
T Consensus 133 KIDlveds~---------------------~~~~evE~lak~l~~----------------RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 133 KIDLVEDSQ---------------------MDKGEVEGLAKKLHK----------------RLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred cchhhHhhh---------------------cchHHHHHHHHHhhh----------------hhhhhhhhhhhhhHHHHHH
Confidence 999986521 111122111111111 2246999999999999999
Q ss_pred HHHHHHHhhh
Q 016253 377 VDETLRRRHL 386 (392)
Q Consensus 377 v~~~Il~~~l 386 (392)
+++.+.+..-
T Consensus 176 LaeK~~q~~k 185 (246)
T KOG4252|consen 176 LAEKLTQQKK 185 (246)
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 146
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.26 E-value=7.3e-11 Score=108.08 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=74.1
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
..+.+|||+|++.+.+-|.....+++++++|+|.++-. ......+.+..+.. ....|+++++||+|+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t~~~l~~~~~------~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC-------PQPQTSEHLAALEI------MGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC-------CCcchHHHHHHHHH------cCCCcEEEEEEchhc
Confidence 57899999999999998888889999999999985310 00111122222211 112579999999998
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
..+ .......+.+.+.+.... ...+.++.+||++++||+.+|+.+.+.
T Consensus 150 ~~~-----------------------~~~~~~~~~i~~~~~~~~---------~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 150 VKE-----------------------EQALENYEQIKKFVKGTI---------AENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred cCH-----------------------HHHHHHHHHHHHHHhccc---------cCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 542 111222233333222110 112456789999999999999988764
Q ss_pred H
Q 016253 381 L 381 (392)
Q Consensus 381 I 381 (392)
+
T Consensus 198 l 198 (203)
T cd01888 198 I 198 (203)
T ss_pred C
Confidence 3
No 147
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.24 E-value=8.9e-11 Score=102.22 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=72.3
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
+..+++|||+||+.+...+..++++++++++|+|.++ ....++...+..+ .. ....|+++++||+|
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~~--~~~~~~ilv~NK~D 115 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-EL--LGIKRGLVVLTKAD 115 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-HH--hCCCcEEEEEECcc
Confidence 4689999999999998888889999999999999752 1111222222211 11 11248999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+..+. ......+.+.+.+... .-....++.+||++++||+++|+.+..
T Consensus 116 l~~~~-----------------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 116 LVDED-----------------------WLELVEEEIRELLAGT---------FLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ccCHH-----------------------HHHHHHHHHHHHHHhc---------CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 86431 0111112222222210 002355778999999999999988753
No 148
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.23 E-value=7.1e-11 Score=104.93 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=75.6
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+.+.+++|||+|++.++..|..++++++++|+|+|.++..+ . +.+..+..... .++|+++++||
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~----~~~~~~~~~~~----~~~~iiiv~NK 128 (179)
T cd01890 64 GQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------A----QTLANFYLALE----NNLEIIPVINK 128 (179)
T ss_pred CCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------H----hhHHHHHHHHH----cCCCEEEEEEC
Confidence 356789999999999999999999999999999999864211 1 12222222322 35799999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+.+.. ..+..+-+.+.+. . ....++.+||++++||+++|+.+
T Consensus 129 ~Dl~~~~------------------------~~~~~~~~~~~~~-------~-----~~~~~~~~Sa~~g~gi~~l~~~l 172 (179)
T cd01890 129 IDLPSAD------------------------PERVKQQIEDVLG-------L-----DPSEAILVSAKTGLGVEDLLEAI 172 (179)
T ss_pred CCCCcCC------------------------HHHHHHHHHHHhC-------C-----CcccEEEeeccCCCCHHHHHHHH
Confidence 9985321 0111111111110 0 01236789999999999999998
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 173 ~~~~ 176 (179)
T cd01890 173 VERI 176 (179)
T ss_pred HhhC
Confidence 7654
No 149
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.14 E-value=7.7e-10 Score=97.12 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=72.6
Q ss_pred cccccceeEEecCCccccccchhc----------cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIH----------LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~----------yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
..+++.+++|||+|+.. +..|.. +...++++|+|+|.++.+. -++.+...++..+... +
T Consensus 43 ~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~--------~~~~~~~~~~~~l~~~--~ 111 (168)
T cd01897 43 DYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEEQLSLFEEIKPL--F 111 (168)
T ss_pred ccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc--------cchHHHHHHHHHHHhh--c
Confidence 44567999999999842 222211 1123689999999864211 1234444555555432 3
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.+.|+++++||+|+.... ...+. .++.. ...+.++.|||++
T Consensus 112 ~~~pvilv~NK~Dl~~~~-----------------------~~~~~-----~~~~~-----------~~~~~~~~~Sa~~ 152 (168)
T cd01897 112 KNKPVIVVLNKIDLLTFE-----------------------DLSEI-----EEEEE-----------LEGEEVLKISTLT 152 (168)
T ss_pred CcCCeEEEEEccccCchh-----------------------hHHHH-----HHhhh-----------hccCceEEEEecc
Confidence 478999999999985421 11111 11111 1125578999999
Q ss_pred chhHHHHHHHHHHHHH
Q 016253 367 PKLVKKTFKLVDETLR 382 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il 382 (392)
+.||+++|+.+.+.++
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 153 EEGVDEVKNKACELLL 168 (168)
T ss_pred cCCHHHHHHHHHHHhC
Confidence 9999999999988763
No 150
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.12 E-value=9.8e-10 Score=99.22 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=80.5
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.....+.++|++|+..+.+........++++|+|+|..+- -.....+.+..+.. .+.|+++++||
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-----------~~~~~~~~l~~~~~----~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-----------IQPQTEEHLKILRE----LGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-----------STHHHHHHHHHHHH----TT-SEEEEEET
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccc-----------cccccccccccccc----cccceEEeeee
Confidence 4566899999999999999888889999999999997421 11123333444332 26789999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+...+ +.+..+-+...|.+-+ ..+ ....+.++.+||+.+.||..+++.+
T Consensus 132 ~D~~~~~------------------------~~~~~~~~~~~l~~~~---~~~--~~~~~~vi~~Sa~~g~gi~~Ll~~l 182 (188)
T PF00009_consen 132 MDLIEKE------------------------LEEIIEEIKEKLLKEY---GEN--GEEIVPVIPISALTGDGIDELLEAL 182 (188)
T ss_dssp CTSSHHH------------------------HHHHHHHHHHHHHHHT---TST--TTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred ccchhhh------------------------HHHHHHHHHHHhcccc---ccC--ccccceEEEEecCCCCCHHHHHHHH
Confidence 9997332 2333333443443221 110 0134778899999999999999888
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 183 ~~~~ 186 (188)
T PF00009_consen 183 VELL 186 (188)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 7654
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.11 E-value=7.9e-10 Score=96.84 Aligned_cols=118 Identities=13% Similarity=0.021 Sum_probs=76.3
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+..+.+|||+|++.++..|..++..++++++|+|.++.+. .+....+..+.. .+.|+++++||+
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-----------~~~~~~~~~~~~----~~~p~ivv~NK~ 112 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-----------PQTIEAIKLAKA----ANVPFIVALNKI 112 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-----------HHHHHHHHHHHH----cCCCEEEEEEce
Confidence 46789999999999999999999999999999999875321 111222222221 357999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+..+.. ....+... .+..... .. ..+.+.++.+||+++.||+++|+.+.
T Consensus 113 Dl~~~~~---------------------~~~~~~~~----~~~~~~~--~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 113 DKPNANP---------------------ERVKNELS----ELGLQGE--DE---WGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred ecccccH---------------------HHHHHHHH----Hhhcccc--cc---ccCcCcEEEeecccCCCHHHHHHHHH
Confidence 9853211 01111111 1110000 00 12245678999999999999999887
Q ss_pred HHH
Q 016253 379 ETL 381 (392)
Q Consensus 379 ~~I 381 (392)
+.-
T Consensus 163 ~~~ 165 (168)
T cd01887 163 LLA 165 (168)
T ss_pred Hhh
Confidence 643
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.09 E-value=3.5e-09 Score=108.01 Aligned_cols=69 Identities=25% Similarity=0.260 Sum_probs=47.6
Q ss_pred ccccceeEEecCCccccccch--------hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w--------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
.++..+++|||+|++.....+ ..|+++++++|+|+|.++-. ...+ . ++..+.. .++
T Consensus 248 ~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~----------s~~~-~-~l~~~~~----~~~ 311 (442)
T TIGR00450 248 LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPL----------TKDD-F-LIIDLNK----SKK 311 (442)
T ss_pred ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCC----------ChhH-H-HHHHHhh----CCC
Confidence 345678999999997655433 46889999999999986321 1111 1 4444322 357
Q ss_pred eEEEEeeCCCCcc
Q 016253 290 SFMLFLNKFDIFE 302 (392)
Q Consensus 290 ~iiL~~NK~Dl~~ 302 (392)
|+++|+||+|+..
T Consensus 312 piIlV~NK~Dl~~ 324 (442)
T TIGR00450 312 PFILVLNKIDLKI 324 (442)
T ss_pred CEEEEEECccCCC
Confidence 9999999999854
No 153
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.9e-10 Score=99.51 Aligned_cols=77 Identities=27% Similarity=0.515 Sum_probs=71.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
...+++++-+|.||+..-|+.|..||-.|++|+|.||. .+.+|+.|+...++.++......++|+++++|
T Consensus 60 ~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda----------~d~er~~es~~eld~ll~~e~la~vp~lilgn 129 (193)
T KOG0077|consen 60 SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA----------YDQERFAESKKELDALLSDESLATVPFLILGN 129 (193)
T ss_pred eecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh----------hhHHHhHHHHHHHHHHHhHHHHhcCcceeecc
Confidence 56788999999999999999999999999999999996 68899999999999999999889999999999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|....
T Consensus 130 KId~p~a 136 (193)
T KOG0077|consen 130 KIDIPYA 136 (193)
T ss_pred cccCCCc
Confidence 9998754
No 154
>PRK04213 GTP-binding protein; Provisional
Probab=99.05 E-value=1.7e-09 Score=98.32 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=71.5
Q ss_pred ceeEEecCC-----------ccccccchhcccc-c---cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 222 VYRLFDVGG-----------QRNERRKWIHLFE-G---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 222 ~l~i~DvgG-----------q~~~r~~w~~yf~-~---~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
.+.+|||+| |+.++..|.+|++ + ++++++|+|.+++.+....-.....+.....++..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence 589999999 7889999999986 3 46888898876543321100000111112222332222
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcc--eeEEEEEe
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV--FKIYRTTA 364 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~--~~~~~TsA 364 (392)
.++|+++++||+|+..++ ++..+-+.+.+. + ..+ -+. ..++.|||
T Consensus 129 ~~~p~iiv~NK~Dl~~~~-------------------------~~~~~~~~~~~~-~----~~~---~~~~~~~~~~~SA 175 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR-------------------------DEVLDEIAERLG-L----YPP---WRQWQDIIAPISA 175 (201)
T ss_pred cCCCeEEEEECccccCcH-------------------------HHHHHHHHHHhc-C----Ccc---ccccCCcEEEEec
Confidence 268999999999985432 001111111111 0 000 011 23678999
Q ss_pred eCchhHHHHHHHHHHHH
Q 016253 365 LDPKLVKKTFKLVDETL 381 (392)
Q Consensus 365 ~d~~nI~~vF~~v~~~I 381 (392)
+++ ||+++|+.+.+.+
T Consensus 176 ~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 176 KKG-GIEELKEAIRKRL 191 (201)
T ss_pred ccC-CHHHHHHHHHHhh
Confidence 999 9999999998875
No 155
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.2e-10 Score=97.53 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=74.5
Q ss_pred HHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEc
Q 016253 175 YFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAI 254 (392)
Q Consensus 175 yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dl 254 (392)
|-..++.+=++-.|.||. |+.-+...... +.+.++|..|||+|||.+-.+-..||-..++.|+++|+
T Consensus 26 ~vkr~ltgeFe~~y~at~-----------Gv~~~pl~f~t--n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdV 92 (216)
T KOG0096|consen 26 FVKRHLTGEFEKTYPATL-----------GVEVHPLLFDT--NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDV 92 (216)
T ss_pred hhhhhhcccceecccCcc-----------eeEEeeeeeec--ccCcEEEEeeecccceeecccccccEEecceeEEEeee
Confidence 444445554555555554 54433321111 33469999999999999999999999999999999998
Q ss_pred ccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccC
Q 016253 255 SEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP 309 (392)
Q Consensus 255 s~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~ 309 (392)
+. +.....+-.|.++.+.. ..++||+++|||.|+...+++..+
T Consensus 93 ts----------r~t~~n~~rwhrd~~rv--~~NiPiv~cGNKvDi~~r~~k~k~ 135 (216)
T KOG0096|consen 93 TS----------RFTYKNVPRWHRDLVRV--RENIPIVLCGNKVDIKARKVKAKP 135 (216)
T ss_pred ee----------hhhhhcchHHHHHHHHH--hcCCCeeeeccceecccccccccc
Confidence 53 33344445555555442 246999999999999876654433
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.01 E-value=8.5e-09 Score=105.55 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=46.2
Q ss_pred cccceeEEecCCccccccc--------hhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 219 SGEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~--------w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
.+..+.+|||+|++..... ...++++++++++|+|.++... . +...+|.. ..+.|
T Consensus 261 ~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s----------~-~~~~~l~~------~~~~p 323 (449)
T PRK05291 261 DGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT----------E-EDDEILEE------LKDKP 323 (449)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC----------h-hHHHHHHh------cCCCC
Confidence 4457899999999754321 2347899999999999864321 1 12233333 34689
Q ss_pred EEEEeeCCCCcc
Q 016253 291 FMLFLNKFDIFE 302 (392)
Q Consensus 291 iiL~~NK~Dl~~ 302 (392)
+++++||+|+..
T Consensus 324 iiiV~NK~DL~~ 335 (449)
T PRK05291 324 VIVVLNKADLTG 335 (449)
T ss_pred cEEEEEhhhccc
Confidence 999999999864
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.00 E-value=3e-09 Score=94.72 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=79.4
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
....+.+|||+|+..++..|..++++++++++|+|.++... .....++..... .+.|+++++||+
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-----------~~~~~~~~~~~~----~~~~i~iv~nK~ 124 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-----------PQTREHLRIARE----GGLPIIVAINKI 124 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-----------HHHHHHHHHHHH----CCCCeEEEEECC
Confidence 45689999999999999999999999999999999753211 111222222222 368999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhcc--CCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS--TAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~--~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+..+ .......+++.+.+....... ...........++.+||+++.|++.+|+.
T Consensus 125 D~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~ 181 (189)
T cd00881 125 DRVGE-----------------------EDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEA 181 (189)
T ss_pred CCcch-----------------------hcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHH
Confidence 98742 112222333333322110000 00000013466788999999999999998
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+...+
T Consensus 182 l~~~l 186 (189)
T cd00881 182 IVEHL 186 (189)
T ss_pred HHhhC
Confidence 87754
No 158
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.98 E-value=4.4e-09 Score=95.30 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=53.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..+.+.+++|||+|++.++..|..|+++++++++|+|.++- .......++..+.. .++|+++++|
T Consensus 61 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-----------~~~~~~~~~~~~~~----~~~p~iiv~N 125 (194)
T cd01891 61 TYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-----------PMPQTRFVLKKALE----LGLKPIVVIN 125 (194)
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cCCCEEEEEE
Confidence 45667899999999999999999999999999999998631 01122223333332 2589999999
Q ss_pred CCCCcc
Q 016253 297 KFDIFE 302 (392)
Q Consensus 297 K~Dl~~ 302 (392)
|+|+..
T Consensus 126 K~Dl~~ 131 (194)
T cd01891 126 KIDRPD 131 (194)
T ss_pred CCCCCC
Confidence 999864
No 159
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.98 E-value=1.3e-09 Score=99.85 Aligned_cols=77 Identities=21% Similarity=0.388 Sum_probs=62.0
Q ss_pred ccccceeEEecCCccccccchhcccccc-CEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC--CCCceEEEE
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGV-SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFMLF 294 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~-~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~--~~~~~iiL~ 294 (392)
.++..+++||++||.++|..|..|++++ +++|||+|.++. .+++.++..++..++.+.. ...+|++|+
T Consensus 45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~---------~~~~~~~~~~l~~il~~~~~~~~~~pvliv 115 (203)
T cd04105 45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF---------QKNLKDVAEFLYDILTDLEKVKNKIPVLIA 115 (203)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc---------hhHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 3467899999999999999999999999 999999998532 1566677777776655432 247999999
Q ss_pred eeCCCCccc
Q 016253 295 LNKFDIFEK 303 (392)
Q Consensus 295 ~NK~Dl~~~ 303 (392)
+||+|++.+
T Consensus 116 ~NK~Dl~~a 124 (203)
T cd04105 116 CNKQDLFTA 124 (203)
T ss_pred ecchhhccc
Confidence 999999764
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.98 E-value=6.4e-09 Score=89.96 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=70.8
Q ss_pred cccceeEEecCCcccccc------chhcccc--ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 219 SGEVYRLFDVGGQRNERR------KWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~------~w~~yf~--~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
.+..+.+|||+|++.+.. .+..|+. +++++|+|+|.++.+ ....++..+.. .++|
T Consensus 41 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------------~~~~~~~~~~~----~~~~ 103 (158)
T cd01879 41 GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE-------------RNLYLTLQLLE----LGLP 103 (158)
T ss_pred CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch-------------hHHHHHHHHHH----cCCC
Confidence 345799999999987765 4777775 999999999985321 11233334433 2589
Q ss_pred EEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhH
Q 016253 291 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 370 (392)
Q Consensus 291 iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI 370 (392)
+++++||+|+..... . - ... +.+...+ .+.++.+||.++.|+
T Consensus 104 ~iiv~NK~Dl~~~~~----~--------------~-~~~----~~~~~~~---------------~~~~~~iSa~~~~~~ 145 (158)
T cd01879 104 VVVALNMIDEAEKRG----I--------------K-IDL----DKLSELL---------------GVPVVPTSARKGEGI 145 (158)
T ss_pred EEEEEehhhhccccc----c--------------h-hhH----HHHHHhh---------------CCCeEEEEccCCCCH
Confidence 999999999854311 0 0 001 1111111 145678999999999
Q ss_pred HHHHHHHHHH
Q 016253 371 KKTFKLVDET 380 (392)
Q Consensus 371 ~~vF~~v~~~ 380 (392)
+.+|+.+.+.
T Consensus 146 ~~l~~~l~~~ 155 (158)
T cd01879 146 DELKDAIAEL 155 (158)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 161
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.96 E-value=1.2e-09 Score=93.56 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=93.1
Q ss_pred ccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHH
Q 016253 198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277 (392)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f 277 (392)
.+..|.|++...-.+.. .+..+.|.+||+||||+++...+.-..++-+|+|++||+ .+..+....+|+
T Consensus 48 ~~~q~~GvN~mdkt~~i--~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt----------~r~TLnSi~~WY 115 (205)
T KOG1673|consen 48 EYTQTLGVNFMDKTVSI--RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLT----------RRSTLNSIKEWY 115 (205)
T ss_pred HHHHHhCccceeeEEEe--cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecC----------chHHHHHHHHHH
Confidence 34567777755432222 556789999999999999999999999999999999994 455555566677
Q ss_pred HHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcce
Q 016253 278 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF 357 (392)
Q Consensus 278 ~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~ 357 (392)
...-.. -+.+--||+|+|.|+|-. + | |++ .. .-..+|.+|.+-+ .-
T Consensus 116 ~QAr~~--NktAiPilvGTKyD~fi~-l---p-------~e~----Q~-~I~~qar~YAk~m----------------nA 161 (205)
T KOG1673|consen 116 RQARGL--NKTAIPILVGTKYDLFID-L---P-------PEL----QE-TISRQARKYAKVM----------------NA 161 (205)
T ss_pred HHHhcc--CCccceEEeccchHhhhc-C---C-------HHH----HH-HHHHHHHHHHHHh----------------CC
Confidence 666432 222334788999998743 1 1 111 00 1223344443322 12
Q ss_pred eEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 358 KIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 358 ~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
..+|+||.-..||..+|..+...+.
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAKLF 186 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHHHh
Confidence 3468899999999999998877765
No 162
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.96 E-value=1.2e-08 Score=103.91 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=74.5
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+.+....| +.++..+.+|||+|++.+.+.......+++++|+|+|.++-. .-.. .....+..
T Consensus 69 G~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~------~~~~---~~~~~~~~ 133 (425)
T PRK12317 69 GVTIDLAHKKF------ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG------GVMP---QTREHVFL 133 (425)
T ss_pred CccceeeeEEE------ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCC------CCCc---chHHHHHH
Confidence 45555556666 667789999999999877655555567899999999985310 0001 11111111
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+ .. ....|+++++||+|+.+... ..+++..+.+...+.... - ....+.+
T Consensus 134 ~-~~--~~~~~iivviNK~Dl~~~~~---------------------~~~~~~~~~i~~~l~~~g----~---~~~~~~i 182 (425)
T PRK12317 134 A-RT--LGINQLIVAINKMDAVNYDE---------------------KRYEEVKEEVSKLLKMVG----Y---KPDDIPF 182 (425)
T ss_pred H-HH--cCCCeEEEEEEccccccccH---------------------HHHHHHHHHHHHHHHhhC----C---CcCcceE
Confidence 1 11 12247999999999853100 111222222322222210 0 1123567
Q ss_pred EEEEeeCchhHHHHH
Q 016253 360 YRTTALDPKLVKKTF 374 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF 374 (392)
+.+||++++||.+.+
T Consensus 183 i~iSA~~g~gi~~~~ 197 (425)
T PRK12317 183 IPVSAFEGDNVVKKS 197 (425)
T ss_pred EEeecccCCCccccc
Confidence 889999999998754
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.92 E-value=8.6e-09 Score=93.25 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=72.2
Q ss_pred ccccceeEEecCCccccccchhcccc---ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEE
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 294 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~---~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~ 294 (392)
.++..+.+|||+|+.. .+..++. .++++++|+|.++..+ ... .+.+. +... .+.|++++
T Consensus 65 ~~~~~~~i~DtpG~~~---~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~~-~~~~~-~~~~------~~~~~iiv 126 (192)
T cd01889 65 EENLQITLVDCPGHAS---LIRTIIGGAQIIDLMLLVVDATKGIQ-------TQT-AECLV-IGEI------LCKKLIVV 126 (192)
T ss_pred ccCceEEEEECCCcHH---HHHHHHHHHhhCCEEEEEEECCCCcc-------HHH-HHHHH-HHHH------cCCCEEEE
Confidence 3467899999999964 4555544 5689999999763211 110 11111 1111 14699999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
+||+|+..+... . ...++..+++...+.+.. ...+.++.+||++++|+++++
T Consensus 127 ~NK~Dl~~~~~~------------------~-~~~~~~~~~l~~~~~~~~---------~~~~~vi~iSa~~g~gi~~L~ 178 (192)
T cd01889 127 LNKIDLIPEEER------------------E-RKIEKMKKKLQKTLEKTR---------FKNSPIIPVSAKPGGGEAELG 178 (192)
T ss_pred EECcccCCHHHH------------------H-HHHHHHHHHHHHHHHhcC---------cCCCCEEEEeccCCCCHHHHH
Confidence 999998632100 0 112333344433333210 123557889999999999999
Q ss_pred HHHHHHHH
Q 016253 375 KLVDETLR 382 (392)
Q Consensus 375 ~~v~~~Il 382 (392)
+.+.+.|.
T Consensus 179 ~~l~~~~~ 186 (192)
T cd01889 179 KDLNNLIV 186 (192)
T ss_pred HHHHhccc
Confidence 99988774
No 164
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.91 E-value=1.2e-08 Score=89.56 Aligned_cols=115 Identities=13% Similarity=0.201 Sum_probs=70.0
Q ss_pred cceeEEecCCcc----ccccchhcccc---ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEE
Q 016253 221 EVYRLFDVGGQR----NERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 293 (392)
Q Consensus 221 ~~l~i~DvgGq~----~~r~~w~~yf~---~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL 293 (392)
..+.+|||+|+. ..+.++..|++ +++++++|+|.++-+ .....+..+.+.+.... +...+.|+++
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~------~~~~~~~~~~~~l~~~~--~~~~~~p~iv 119 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD------DPVEDYKTIRNELELYN--PELLEKPRIV 119 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC------CHHHHHHHHHHHHHHhC--ccccccccEE
Confidence 479999999973 33344445444 599999999986321 12233333344343331 2235789999
Q ss_pred EeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHH
Q 016253 294 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 373 (392)
Q Consensus 294 ~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~v 373 (392)
++||+|+..... .. +++...... .....++.+||+++.+|+++
T Consensus 120 v~NK~Dl~~~~~-----------------------~~---~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 120 VLNKIDLLDEEE-----------------------LF---ELLKELLKE-----------LWGKPVFPISALTGEGLDEL 162 (170)
T ss_pred EEEchhcCCchh-----------------------hH---HHHHHHHhh-----------CCCCCEEEEecCCCCCHHHH
Confidence 999999854311 11 111111111 01245678999999999999
Q ss_pred HHHHHHH
Q 016253 374 FKLVDET 380 (392)
Q Consensus 374 F~~v~~~ 380 (392)
|+.+.+.
T Consensus 163 ~~~i~~~ 169 (170)
T cd01898 163 LRKLAEL 169 (170)
T ss_pred HHHHHhh
Confidence 9988754
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.89 E-value=1.5e-08 Score=106.90 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=75.4
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+.+.+++|||+|++.|+..|..++++++++|+|+|.++-.+ . +....|..... .+.|+++|+||
T Consensus 67 g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~-------~----qt~~~~~~~~~----~~ipiIiViNK 131 (595)
T TIGR01393 67 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE-------A----QTLANVYLALE----NDLEIIPVINK 131 (595)
T ss_pred CCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC-------H----hHHHHHHHHHH----cCCCEEEEEEC
Confidence 345889999999999999999999999999999999863211 1 12222222222 25799999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+.... .++..+-+.+.+. + . ...++.+||+++.||+.+|+.+
T Consensus 132 iDl~~~~------------------------~~~~~~el~~~lg-~-----~------~~~vi~vSAktG~GI~~Lle~I 175 (595)
T TIGR01393 132 IDLPSAD------------------------PERVKKEIEEVIG-L-----D------ASEAILASAKTGIGIEEILEAI 175 (595)
T ss_pred cCCCccC------------------------HHHHHHHHHHHhC-C-----C------cceEEEeeccCCCCHHHHHHHH
Confidence 9985321 1111111111110 0 0 0135689999999999999998
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 176 ~~~l 179 (595)
T TIGR01393 176 VKRV 179 (595)
T ss_pred HHhC
Confidence 8765
No 166
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.86 E-value=3.2e-09 Score=93.52 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=86.2
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
+.+++||++||+++-.+..-||+.+++...|+|+|. +.+.+-...+++-+.+-+.-|.-..+|++|+.||||.
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~-------s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~ 147 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR-------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ 147 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc-------cccccHHHHHHHhccCcccCCCCCcchheeccchhcc
Confidence 578999999999999999999999999999999963 3344444455555555555566667899999999997
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
...-+... ....-+ |.. .+. ---.++|||++..||.++-+.+++.
T Consensus 148 e~~a~~~~--------------------~~~~d~-----f~k---eng-------f~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 148 EKSAKNEA--------------------TRQFDN-----FKK---ENG-------FEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred ChHhhhhh--------------------HHHHHH-----HHh---ccC-------ccceeeeccccccChhHHHHHHHHH
Confidence 43211000 011111 111 011 1235789999999999999999999
Q ss_pred HHHhh
Q 016253 381 LRRRH 385 (392)
Q Consensus 381 Il~~~ 385 (392)
|+.+.
T Consensus 193 ~lvnd 197 (229)
T KOG4423|consen 193 ILVND 197 (229)
T ss_pred HHhhc
Confidence 98654
No 167
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.84 E-value=4.8e-08 Score=83.58 Aligned_cols=136 Identities=22% Similarity=0.289 Sum_probs=96.9
Q ss_pred CCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCcccc-ccchhccccccCEEEEEEEcccccccccchh
Q 016253 187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNE-RRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 265 (392)
Q Consensus 187 ~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~-r~~w~~yf~~~~~iifv~dls~yd~~l~e~~ 265 (392)
+|.||++||..+.+-|- .+-.-.++++||+|-..+ ..+=.|||+-+++.++|||..++ .
T Consensus 39 e~~pTiEDiY~~svet~-------------rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~-------e 98 (198)
T KOG3883|consen 39 ELHPTIEDIYVASVETD-------------RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDP-------E 98 (198)
T ss_pred ccccchhhheeEeeecC-------------CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCH-------H
Confidence 68899999976544332 233346899999997666 66778999999999999997543 3
Q ss_pred hhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhh
Q 016253 266 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF 345 (392)
Q Consensus 266 ~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~ 345 (392)
+.+|++....+.+. ......+||++++||.|+.+.+- .+.+-|..|...
T Consensus 99 Sf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p~~---------------------vd~d~A~~Wa~r------- 147 (198)
T KOG3883|consen 99 SFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEPRE---------------------VDMDVAQIWAKR------- 147 (198)
T ss_pred HHHHHHHHHHHHhh---ccccccccEEEEechhhcccchh---------------------cCHHHHHHHHhh-------
Confidence 44555444444443 55567899999999999853211 345666677432
Q ss_pred ccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 346 QSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 346 ~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
-.+..++++|+|....-+-|..+..-+-
T Consensus 148 ---------Ekvkl~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 148 ---------EKVKLWEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred ---------hheeEEEEEeccchhhhhHHHHHHHhcc
Confidence 1366788999999999999988776553
No 168
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.82 E-value=2.8e-08 Score=97.72 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=78.4
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccc-------cccchhccccccCEEEEEEEcccccccccchhhhhhHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM 271 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~-------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~ 271 (392)
+.|++|+.. + . ....+++||++|+.. ....|..+++.+++++||+|+++.+.. ...+.+.
T Consensus 192 ~~p~ig~v~--~------~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~----~~~e~l~ 258 (329)
T TIGR02729 192 LVPNLGVVR--V------D-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGR----DPIEDYE 258 (329)
T ss_pred cCCEEEEEE--e------C-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcccccc----CHHHHHH
Confidence 467777643 2 1 135789999999842 233444556679999999998754210 1222333
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCC
Q 016253 272 ETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 351 (392)
Q Consensus 272 es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~ 351 (392)
.+.+.+... ++.+.+.|++|++||+|+..+. ..++..+++.+.+
T Consensus 259 ~l~~EL~~~--~~~l~~kp~IIV~NK~DL~~~~-----------------------~~~~~~~~l~~~~----------- 302 (329)
T TIGR02729 259 IIRNELKKY--SPELAEKPRIVVLNKIDLLDEE-----------------------ELAELLKELKKAL----------- 302 (329)
T ss_pred HHHHHHHHh--hhhhccCCEEEEEeCccCCChH-----------------------HHHHHHHHHHHHc-----------
Confidence 333333222 2334578999999999985431 1122222222110
Q ss_pred CCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 352 RVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 352 ~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
.+.++.+||+++++|+++|+.+.+.+
T Consensus 303 ----~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 ----GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ----CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 13467899999999999999988754
No 169
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.81 E-value=1e-07 Score=82.62 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=62.9
Q ss_pred ceeEEecCCc----------cccccchhccccc---cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 222 VYRLFDVGGQ----------RNERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 222 ~l~i~DvgGq----------~~~r~~w~~yf~~---~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
.+.+|||+|- +.++..+..|+.. ++++++++|..... .....+...++... +
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~~-------~ 110 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEEL-------G 110 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHHc-------C
Confidence 5778999883 3345556666654 56888998864211 01111222333221 4
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|+++++||+|+....... ........++.. . .....++.+||+|+.
T Consensus 111 ~~vi~v~nK~D~~~~~~~~-------------------~~~~~~~~~l~~----~----------~~~~~~~~~Sa~~~~ 157 (170)
T cd01876 111 IPFLVVLTKADKLKKSELA-------------------KALKEIKKELKL----F----------EIDPPIILFSSLKGQ 157 (170)
T ss_pred CCEEEEEEchhcCChHHHH-------------------HHHHHHHHHHHh----c----------cCCCceEEEecCCCC
Confidence 7999999999985321000 011111111111 0 112345689999999
Q ss_pred hHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDET 380 (392)
Q Consensus 369 nI~~vF~~v~~~ 380 (392)
+++++++.+.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 999999988764
No 170
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.79 E-value=3.6e-08 Score=87.11 Aligned_cols=126 Identities=16% Similarity=0.202 Sum_probs=82.6
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|++++.-... -..+..+.++||.||++|+.+|..+++++.++|+++|-+ ..... ++..+.+
T Consensus 51 r~tTva~D~g~~~-----~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss----------~~~~~-~a~~ii~ 114 (187)
T COG2229 51 RPTTVAMDFGSIE-----LDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS----------RPITF-HAEEIID 114 (187)
T ss_pred cceeEeecccceE-----EcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecC----------CCcch-HHHHHHH
Confidence 3556665554441 233478999999999999999999999999999999964 22222 3333332
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCccee
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 358 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~ 358 (392)
-+-... .+|++++.||+||+... +++.+.++++. . ...+.
T Consensus 115 f~~~~~---~ip~vVa~NK~DL~~a~--------------------ppe~i~e~l~~---~--------------~~~~~ 154 (187)
T COG2229 115 FLTSRN---PIPVVVAINKQDLFDAL--------------------PPEKIREALKL---E--------------LLSVP 154 (187)
T ss_pred HHhhcc---CCCEEEEeeccccCCCC--------------------CHHHHHHHHHh---c--------------cCCCc
Confidence 222111 18999999999998651 11223333221 1 02366
Q ss_pred EEEEEeeCchhHHHHHHHHHHH
Q 016253 359 IYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 359 ~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
...++|++++..++..+.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 7889999999998887765543
No 171
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.79 E-value=6.1e-08 Score=95.48 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=80.2
Q ss_pred ccceeeeeEEEeeccCCCccccccceeEEecCCccc-------cccchhccccccCEEEEEEEcccccccccchhhhhhH
Q 016253 198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM 270 (392)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~-------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl 270 (392)
++.|+.|+.... ...++.+||++|.-. ....|..+++.++++|+|+|+++.+ .+
T Consensus 192 T~~p~~G~v~~~---------~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~----------s~ 252 (335)
T PRK12299 192 TLHPNLGVVRVD---------DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD----------PV 252 (335)
T ss_pred eeCceEEEEEeC---------CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC----------CH
Confidence 446667654321 234689999999732 2334555677899999999987432 12
Q ss_pred HHHHHHHHHHHc-CCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCC
Q 016253 271 METKELFDWVLK-QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTA 349 (392)
Q Consensus 271 ~es~~~f~~i~~-~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~ 349 (392)
++...|.+++.. ++.+.+.|+++++||+|+..+.. ...+....++ ..
T Consensus 253 e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~---------------------~~~~~~~~~~----~~------- 300 (335)
T PRK12299 253 EDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE---------------------EREKRAALEL----AA------- 300 (335)
T ss_pred HHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh---------------------HHHHHHHHHH----Hh-------
Confidence 232333333332 23345789999999999864311 0001111111 11
Q ss_pred CCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHH
Q 016253 350 PDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 350 ~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
....++.|||+++++|+++|+.+.+.+..
T Consensus 301 -----~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 301 -----LGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred -----cCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 11446789999999999999999987754
No 172
>PRK13768 GTPase; Provisional
Probab=98.79 E-value=1.5e-08 Score=96.08 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=70.9
Q ss_pred ceeEEecCCccc---cccchhccccc-----cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEE
Q 016253 222 VYRLFDVGGQRN---ERRKWIHLFEG-----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 293 (392)
Q Consensus 222 ~l~i~DvgGq~~---~r~~w~~yf~~-----~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL 293 (392)
.+.+||++|+.. ++..|..+++. .++++||+|.+.. .+...+. ...++...+.. ..+.|+++
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~-------~~~~d~~-~~~~l~~~~~~--~~~~~~i~ 167 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA-------KTPSDFV-SLLLLALSVQL--RLGLPQIP 167 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh-------CCHHHHH-HHHHHHHHHHH--HcCCCEEE
Confidence 578999999965 57788776665 7899999997421 1111111 11222111111 13689999
Q ss_pred EeeCCCCccccccccCccccccccc--c----ccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 294 FLNKFDIFEKKVLKVPLNVCEWFKD--Y----QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 294 ~~NK~Dl~~~kl~~~~l~~~~~f~~--y----~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
++||+|+..+....... .++.+ + .....| .. .+...-+.+.+.+.. ....++.+||+++
T Consensus 168 v~nK~D~~~~~~~~~~~---~~l~~~~~~~~~l~~~~~-~~-~~~~~~~~~~i~~~~----------~~~~vi~iSa~~~ 232 (253)
T PRK13768 168 VLNKADLLSEEELERIL---KWLEDPEYLLEELKLEKG-LQ-GLLSLELLRALEETG----------LPVRVIPVSAKTG 232 (253)
T ss_pred EEEhHhhcCchhHHHHH---HHHhCHHHHHHHHhcccc-hH-HHHHHHHHHHHHHHC----------CCCcEEEEECCCC
Confidence 99999997542110000 00110 0 000001 10 111122222222221 1134577999999
Q ss_pred hhHHHHHHHHHHHH
Q 016253 368 KLVKKTFKLVDETL 381 (392)
Q Consensus 368 ~nI~~vF~~v~~~I 381 (392)
++++++.+.+.+.+
T Consensus 233 ~gl~~L~~~I~~~l 246 (253)
T PRK13768 233 EGFDELYAAIQEVF 246 (253)
T ss_pred cCHHHHHHHHHHHc
Confidence 99999998887654
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.77 E-value=7.6e-08 Score=101.35 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=72.9
Q ss_pred ceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCc
Q 016253 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
.+.+|||+|++.|...|..+++.++++|+|+|.++ . .+.++.+.+.... ..++|+++++||+|+.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d--------g---v~~qT~e~i~~~~----~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD--------G---VMPQTIEAISHAK----AANVPIIVAINKIDKP 200 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC--------C---CCHhHHHHHHHHH----HcCCCEEEEEECcccc
Confidence 78999999999999999999999999999999742 1 1122223232221 2368999999999985
Q ss_pred cccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 302 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 302 ~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+. +.++..+++... . +.... -...+.++.+||++++||.++|+.+..
T Consensus 201 ~~------------------------~~e~v~~~L~~~-g-~~~~~-----~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 201 EA------------------------NPDRVKQELSEY-G-LVPED-----WGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cC------------------------CHHHHHHHHHHh-h-hhHHh-----cCCCceEEEEECCCCCChHHHHHhhhh
Confidence 32 112222332211 0 00000 011245678999999999999998753
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.77 E-value=4.7e-08 Score=99.44 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=75.9
Q ss_pred cccceeEEecCCccccccch-----------hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 219 SGEVYRLFDVGGQRNERRKW-----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w-----------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
.+..+.+|||+|+++.++.+ ..+++.++++|+|+|.++- .+ .....++..+.. .
T Consensus 218 ~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~-------~~----~~~~~~~~~~~~----~ 282 (429)
T TIGR03594 218 NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG-------IT----EQDLRIAGLILE----A 282 (429)
T ss_pred CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC-------cc----HHHHHHHHHHHH----c
Confidence 44579999999998776654 3467899999999997521 11 112234444433 2
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
+.|+++++||+|+.+.. ...++..+.+...+..+ ..+.++++||+++
T Consensus 283 ~~~iiiv~NK~Dl~~~~----------------------~~~~~~~~~~~~~~~~~-----------~~~~vi~~SA~~g 329 (429)
T TIGR03594 283 GKALVIVVNKWDLVKDE----------------------KTREEFKKELRRKLPFL-----------DFAPIVFISALTG 329 (429)
T ss_pred CCcEEEEEECcccCCCH----------------------HHHHHHHHHHHHhcccC-----------CCCceEEEeCCCC
Confidence 58999999999986210 11223333333332211 1256788999999
Q ss_pred hhHHHHHHHHHHHHH
Q 016253 368 KLVKKTFKLVDETLR 382 (392)
Q Consensus 368 ~nI~~vF~~v~~~Il 382 (392)
.||+++|+.+.+...
T Consensus 330 ~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 330 QGVDKLLDAIDEVYE 344 (429)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988664
No 175
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.77 E-value=5.6e-08 Score=85.58 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=70.2
Q ss_pred ccceeEEecCCcc----ccccch---hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC------C
Q 016253 220 GEVYRLFDVGGQR----NERRKW---IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC------F 286 (392)
Q Consensus 220 ~~~l~i~DvgGq~----~~r~~w---~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~------~ 286 (392)
+..+.+|||+|+. ..+.+| ..++++++++++|+|.++.+.. ...+.+.+...+...+..... .
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLL 118 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5678999999973 233343 4457889999999998542100 001223333333333332221 2
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.+.|+++++||+|+..... .. .+...... ......++.+||++
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~-----------------------~~---~~~~~~~~-----------~~~~~~~~~~Sa~~ 161 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEE-----------------------LE---EELVRELA-----------LEEGAEVVPISAKT 161 (176)
T ss_pred hhCCeEEEEEchhcCchhH-----------------------HH---HHHHHHHh-----------cCCCCCEEEEehhh
Confidence 4689999999999864311 00 00000000 01224578899999
Q ss_pred chhHHHHHHHHHHH
Q 016253 367 PKLVKKTFKLVDET 380 (392)
Q Consensus 367 ~~nI~~vF~~v~~~ 380 (392)
+.+++++++.+...
T Consensus 162 ~~gl~~l~~~l~~~ 175 (176)
T cd01881 162 EEGLDELIRAIYEL 175 (176)
T ss_pred hcCHHHHHHHHHhh
Confidence 99999999887653
No 176
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.74 E-value=6.3e-08 Score=99.92 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=71.4
Q ss_pred cccccceeEEecCCccc--------cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 217 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~--------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
...+..+.+|||+|++. ++..|..++++++++|||+|.++-. .....+...++. . .+
T Consensus 82 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~--------s~~~~~i~~~l~----~---~~ 146 (472)
T PRK03003 82 EWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA--------TATDEAVARVLR----R---SG 146 (472)
T ss_pred EECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHH----H---cC
Confidence 33456789999999873 4556788999999999999986321 111112222222 1 36
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|++||+||+|+..... +. .+ +..+ .. . ..+.|||+++.
T Consensus 147 ~piilV~NK~Dl~~~~~------------------------~~-~~-----~~~~----g~----~---~~~~iSA~~g~ 185 (472)
T PRK03003 147 KPVILAANKVDDERGEA------------------------DA-AA-----LWSL----GL----G---EPHPVSALHGR 185 (472)
T ss_pred CCEEEEEECccCCccch------------------------hh-HH-----HHhc----CC----C---CeEEEEcCCCC
Confidence 89999999999853100 00 01 1111 00 1 12579999999
Q ss_pred hHHHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETLRR 383 (392)
Q Consensus 369 nI~~vF~~v~~~Il~ 383 (392)
||.++|+.+.+.+..
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999887754
No 177
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.74 E-value=1.9e-08 Score=93.29 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=79.1
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|.......| ..++.++.+|||+|++.+...|......++++|+|+|.++-+. + .......+....+..
T Consensus 62 g~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~---~-~~~~~~~~~~~~~~~ 131 (219)
T cd01883 62 GVTIDVGLAKF------ETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEF---E-AGFEKGGQTREHALL 131 (219)
T ss_pred ccCeecceEEE------eeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcc---c-cccccccchHHHHHH
Confidence 44555555566 5677899999999999888888888889999999999864110 0 000011112222221
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
. . .....|+++++||+|+..... .....++..+.+...+..+. . ..+.+.+
T Consensus 132 ~-~--~~~~~~iiivvNK~Dl~~~~~-------------------~~~~~~~i~~~l~~~l~~~~----~---~~~~~~i 182 (219)
T cd01883 132 A-R--TLGVKQLIVAVNKMDDVTVNW-------------------SEERYDEIKKELSPFLKKVG----Y---NPKDVPF 182 (219)
T ss_pred H-H--HcCCCeEEEEEEccccccccc-------------------cHHHHHHHHHHHHHHHHHcC----C---CcCCceE
Confidence 1 1 122368999999999873200 00123333444433333321 0 1235778
Q ss_pred EEEEeeCchhHH
Q 016253 360 YRTTALDPKLVK 371 (392)
Q Consensus 360 ~~TsA~d~~nI~ 371 (392)
+.+||+++.||.
T Consensus 183 i~iSA~tg~gi~ 194 (219)
T cd01883 183 IPISGLTGDNLI 194 (219)
T ss_pred EEeecCcCCCCC
Confidence 899999999986
No 178
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.74 E-value=9.4e-08 Score=101.08 Aligned_cols=115 Identities=11% Similarity=0.094 Sum_probs=76.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+++|||+|+..|...|..+++.++++|+|+|.++-.+ . .....|..... .+.|+++|+|
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-------~----qt~~~~~~~~~----~~lpiIvViN 134 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------A----QTLANVYLALE----NDLEIIPVLN 134 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-------H----HHHHHHHHHHH----CCCCEEEEEE
Confidence 3456899999999999999999999999999999999863211 1 12222322222 2579999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+. .++..+-+.+.+. + . ...++.+||+++.||..+++.
T Consensus 135 KiDl~~a~------------------------~~~v~~ei~~~lg-~-----~------~~~vi~iSAktG~GI~~Ll~~ 178 (600)
T PRK05433 135 KIDLPAAD------------------------PERVKQEIEDVIG-I-----D------ASDAVLVSAKTGIGIEEVLEA 178 (600)
T ss_pred CCCCCccc------------------------HHHHHHHHHHHhC-C-----C------cceEEEEecCCCCCHHHHHHH
Confidence 99985321 1111111211110 0 0 112568999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+-
T Consensus 179 I~~~lp 184 (600)
T PRK05433 179 IVERIP 184 (600)
T ss_pred HHHhCc
Confidence 887653
No 179
>PRK15494 era GTPase Era; Provisional
Probab=98.69 E-value=8.1e-08 Score=94.91 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=41.4
Q ss_pred cccceeEEecCCccc-cccchh-------ccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 219 SGEVYRLFDVGGQRN-ERRKWI-------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~-~r~~w~-------~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
++..+.+|||+|+.. +..+-. .+++++++++||+|.++ ...... ..++..+... +.|
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~---------s~~~~~--~~il~~l~~~----~~p 162 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK---------SFDDIT--HNILDKLRSL----NIV 162 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC---------CCCHHH--HHHHHHHHhc----CCC
Confidence 345789999999943 222221 24779999999999542 111111 1223333221 356
Q ss_pred EEEEeeCCCCcc
Q 016253 291 FMLFLNKFDIFE 302 (392)
Q Consensus 291 iiL~~NK~Dl~~ 302 (392)
.+|++||+|+..
T Consensus 163 ~IlViNKiDl~~ 174 (339)
T PRK15494 163 PIFLLNKIDIES 174 (339)
T ss_pred EEEEEEhhcCcc
Confidence 778999999853
No 180
>PRK09866 hypothetical protein; Provisional
Probab=98.69 E-value=3.2e-06 Score=88.22 Aligned_cols=117 Identities=11% Similarity=0.140 Sum_probs=68.9
Q ss_pred ccceeEEecCCcccc-cc----chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEE
Q 016253 220 GEVYRLFDVGGQRNE-RR----KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 294 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~-r~----~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~ 294 (392)
...+.+.||+|-..- .+ .-.....+++.|+||+|... .. + . .-....+.+ .. ...+.|++++
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~---~~----s-~---~DeeIlk~L-kk-~~K~~PVILV 295 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ---LK----S-I---SDEEVREAI-LA-VGQSVPLYVL 295 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC---CC----C-h---hHHHHHHHH-Hh-cCCCCCEEEE
Confidence 457889999997542 22 23456889999999999632 00 0 0 001122222 21 1123699999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
.||+|+.++ ...+.+...+|+...+.... -..--++.+||+.+.|++.+.
T Consensus 296 VNKIDl~dr---------------------eeddkE~Lle~V~~~L~q~~---------i~f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 296 VNKFDQQDR---------------------NSDDADQVRALISGTLMKGC---------ITPQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred EEcccCCCc---------------------ccchHHHHHHHHHHHHHhcC---------CCCceEEEEeCCCCCCHHHHH
Confidence 999997421 10234555566554433210 001235679999999999988
Q ss_pred HHHHH
Q 016253 375 KLVDE 379 (392)
Q Consensus 375 ~~v~~ 379 (392)
+.+..
T Consensus 346 deI~~ 350 (741)
T PRK09866 346 HELAN 350 (741)
T ss_pred HHHHh
Confidence 87765
No 181
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.68 E-value=1.3e-07 Score=97.70 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=69.9
Q ss_pred cccceeEEecCCcccc----------ccc-hhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 219 SGEVYRLFDVGGQRNE----------RRK-WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~----------r~~-w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
.+..+.+|||+|+++. +.. ...++++++++|+|+|.++= .. ...+.++..+.. .
T Consensus 257 ~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~----------~s-~~~~~~~~~~~~----~ 321 (472)
T PRK03003 257 GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEP----------IS-EQDQRVLSMVIE----A 321 (472)
T ss_pred CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CC-HHHHHHHHHHHH----c
Confidence 4456789999997432 222 12357899999999998531 11 112234444443 3
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
+.|++|++||+|+.++.. .....+-+...+.. .....+++|||+++
T Consensus 322 ~~piIiV~NK~Dl~~~~~-----------------------~~~~~~~i~~~l~~-----------~~~~~~~~~SAk~g 367 (472)
T PRK03003 322 GRALVLAFNKWDLVDEDR-----------------------RYYLEREIDRELAQ-----------VPWAPRVNISAKTG 367 (472)
T ss_pred CCCEEEEEECcccCChhH-----------------------HHHHHHHHHHhccc-----------CCCCCEEEEECCCC
Confidence 689999999999964210 00001111111110 01134578999999
Q ss_pred hhHHHHHHHHHHHHH
Q 016253 368 KLVKKTFKLVDETLR 382 (392)
Q Consensus 368 ~nI~~vF~~v~~~Il 382 (392)
.||+++|+.+.+.+-
T Consensus 368 ~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 368 RAVDKLVPALETALE 382 (472)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 182
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.68 E-value=2.6e-08 Score=85.13 Aligned_cols=99 Identities=12% Similarity=0.212 Sum_probs=62.1
Q ss_pred eEEecCCcc-----ccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 224 RLFDVGGQR-----NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 224 ~i~DvgGq~-----~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+|||+|+. .++.... .+++++++|+|+|+++-.+.. . .. |.... ..|+++++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~----------~-~~-~~~~~------~~p~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRF----------P-PG-FASIF------VKPVIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCC----------C-hh-HHHhc------cCCeEEEEEee
Confidence 579999983 3333333 578999999999987544321 0 11 21221 13999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.+.. ...+++.+|+... ....++.|||+++.||+++|+.+.
T Consensus 99 Dl~~~~----------------------~~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 99 DLAEAD----------------------VDIERAKELLETA---------------GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ccCCcc----------------------cCHHHHHHHHHHc---------------CCCcEEEEecCCCCCHHHHHHHHh
Confidence 985321 1123333443221 012457899999999999998864
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.67 E-value=1.4e-07 Score=99.47 Aligned_cols=117 Identities=18% Similarity=0.159 Sum_probs=74.8
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce-EEEEeeC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNK 297 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~-iiL~~NK 297 (392)
.+..+.+||++|++.|.+.+..++.+++++|+|+|.++- . .....+.+.++.. .++| +++++||
T Consensus 48 ~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G-------~-~~qT~ehl~il~~-------lgi~~iIVVlNK 112 (581)
T TIGR00475 48 PDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG-------V-MTQTGEHLAVLDL-------LGIPHTIVVITK 112 (581)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-------C-cHHHHHHHHHHHH-------cCCCeEEEEEEC
Confidence 347899999999999999999999999999999998531 0 0111122222211 2466 9999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+.++. .++...+.+.+.+.... . ...+.++.+||++++||+++++.+
T Consensus 113 ~Dlv~~~-----------------------~~~~~~~ei~~~l~~~~----~----~~~~~ii~vSA~tG~GI~eL~~~L 161 (581)
T TIGR00475 113 ADRVNEE-----------------------EIKRTEMFMKQILNSYI----F----LKNAKIFKTSAKTGQGIGELKKEL 161 (581)
T ss_pred CCCCCHH-----------------------HHHHHHHHHHHHHHHhC----C----CCCCcEEEEeCCCCCCchhHHHHH
Confidence 9986421 11111111221111110 0 012557789999999999999887
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 162 ~~l~ 165 (581)
T TIGR00475 162 KNLL 165 (581)
T ss_pred HHHH
Confidence 7654
No 184
>PRK10218 GTP-binding protein; Provisional
Probab=98.66 E-value=2.1e-07 Score=98.19 Aligned_cols=132 Identities=14% Similarity=0.071 Sum_probs=86.1
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+......+ ..+++++.+|||+|+..|...|..+++.++++|+|+|.++= ........|..
T Consensus 53 GiTi~~~~~~i------~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G-----------~~~qt~~~l~~ 115 (607)
T PRK10218 53 GITILAKNTAI------KWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG-----------PMPQTRFVTKK 115 (607)
T ss_pred ceEEEEEEEEE------ecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC-----------ccHHHHHHHHH
Confidence 44555555566 66788999999999999999999999999999999997521 11222333433
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
... .+.|+++|.||+|+..+.. ++..+-+...|..+. .. .....+.+
T Consensus 116 a~~----~gip~IVviNKiD~~~a~~------------------------~~vl~ei~~l~~~l~----~~-~~~~~~PV 162 (607)
T PRK10218 116 AFA----YGLKPIVVINKVDRPGARP------------------------DWVVDQVFDLFVNLD----AT-DEQLDFPI 162 (607)
T ss_pred HHH----cCCCEEEEEECcCCCCCch------------------------hHHHHHHHHHHhccC----cc-ccccCCCE
Confidence 332 2578899999999864321 122222333333221 00 01234667
Q ss_pred EEEEeeCch----------hHHHHHHHHHHHH
Q 016253 360 YRTTALDPK----------LVKKTFKLVDETL 381 (392)
Q Consensus 360 ~~TsA~d~~----------nI~~vF~~v~~~I 381 (392)
.++||+++. ++..+|+.+.+.+
T Consensus 163 i~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 163 VYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred EEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 889999998 4788887776654
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.66 E-value=1.5e-07 Score=101.73 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=74.2
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+..+.||||+|++.|..+|..+++.+|++|+|+|..+ . .+.++...+.... ..++|+++++||+
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd--------G---v~~qT~e~i~~a~----~~~vPiIVviNKi 399 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD--------G---VMPQTIEAINHAK----AAGVPIIVAINKI 399 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC--------C---CCHhHHHHHHHHH----hcCCcEEEEEECc
Confidence 34679999999999999999999999999999999742 1 1222233332221 2368999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+..... +.....+... .+.... -...+.++.+||+++.||+.+|+.+.
T Consensus 400 Dl~~a~~------------------------e~V~~eL~~~--~~~~e~-----~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 400 DKPGANP------------------------DRVKQELSEY--GLVPEE-----WGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred cccccCH------------------------HHHHHHHHHh--cccHHH-----hCCCceEEEEeCCCCCCchHHHHhhh
Confidence 9854211 1111111110 000000 01125677899999999999999876
Q ss_pred H
Q 016253 379 E 379 (392)
Q Consensus 379 ~ 379 (392)
.
T Consensus 449 ~ 449 (787)
T PRK05306 449 L 449 (787)
T ss_pred h
Confidence 4
No 186
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.65 E-value=1.4e-07 Score=99.44 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=88.8
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+......+ ..++.++.+|||+|+..|...|..+++.++++++|+|.++ ..+.....+|.
T Consensus 48 rGiTI~~~~~~v------~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~ 110 (594)
T TIGR01394 48 RGITILAKNTAI------RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLK 110 (594)
T ss_pred CCccEEeeeEEE------EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHH
Confidence 345555555556 6678899999999999999999999999999999999742 11234445565
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCccee
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 358 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~ 358 (392)
.+.. .++|+++|+||+|+..++. ++..+-+...|..+.. +.....+.
T Consensus 111 ~a~~----~~ip~IVviNKiD~~~a~~------------------------~~v~~ei~~l~~~~g~-----~~e~l~~p 157 (594)
T TIGR01394 111 KALE----LGLKPIVVINKIDRPSARP------------------------DEVVDEVFDLFAELGA-----DDEQLDFP 157 (594)
T ss_pred HHHH----CCCCEEEEEECCCCCCcCH------------------------HHHHHHHHHHHHhhcc-----ccccccCc
Confidence 5544 2578999999999854321 1222222233322210 00112355
Q ss_pred EEEEEeeCch----------hHHHHHHHHHHHH
Q 016253 359 IYRTTALDPK----------LVKKTFKLVDETL 381 (392)
Q Consensus 359 ~~~TsA~d~~----------nI~~vF~~v~~~I 381 (392)
+.++||+++. +|..+|+.+.+.+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 7789999985 7999998887765
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.65 E-value=1.4e-07 Score=101.01 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=75.7
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+..+.+|||+|++.|.+.|..++..++++|+|+|.++-. ...+.+.+..+. ..++|+++++||+
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv-----------~~QT~E~I~~~k----~~~iPiIVViNKi 357 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV-----------KPQTIEAINYIQ----AANVPIIVAINKI 357 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC-----------ChhhHHHHHHHH----hcCceEEEEEECC
Confidence 4578999999999999999999999999999999974311 112222222222 1368999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.... .++..+.+... .+.... -...+.++.+||+++.||..+|+.+.
T Consensus 358 Dl~~~~------------------------~e~v~~eL~~~--~ll~e~-----~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 358 DKANAN------------------------TERIKQQLAKY--NLIPEK-----WGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred CccccC------------------------HHHHHHHHHHh--ccchHh-----hCCCceEEEEECCCCCCHHHHHHhhh
Confidence 986421 11111221110 000000 01125678899999999999999876
Q ss_pred HH
Q 016253 379 ET 380 (392)
Q Consensus 379 ~~ 380 (392)
..
T Consensus 407 ~l 408 (742)
T CHL00189 407 LL 408 (742)
T ss_pred hh
Confidence 54
No 188
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.65 E-value=7.2e-08 Score=84.73 Aligned_cols=106 Identities=12% Similarity=0.215 Sum_probs=68.6
Q ss_pred EEecCCccccccchhc----cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 225 LFDVGGQRNERRKWIH----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 225 i~DvgGq~~~r~~w~~----yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
+|||+|+...+..|.. .+++++++++|+|.++-++.. . .++..+ ..+.|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~---------~---~~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRL---------P---AGLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccccc---------C---HHHHhc-----cCCCCeEEEEEcccc
Confidence 6999999555555533 368999999999986443221 1 111222 125789999999998
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
... +.+...+++.+. .-...+++|||++++||+++|+.+.+.
T Consensus 104 ~~~------------------------~~~~~~~~~~~~--------------~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 104 PDA------------------------DVAATRKLLLET--------------GFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred Ccc------------------------cHHHHHHHHHHc--------------CCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 431 122333333221 001357789999999999999999888
Q ss_pred HHHhh
Q 016253 381 LRRRH 385 (392)
Q Consensus 381 Il~~~ 385 (392)
+.+.+
T Consensus 146 ~~~~~ 150 (158)
T PRK15467 146 TKQEE 150 (158)
T ss_pred chhhh
Confidence 75543
No 189
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.64 E-value=9.3e-08 Score=94.85 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=66.9
Q ss_pred ccceeEEecCCc---------cccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 220 GEVYRLFDVGGQ---------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 220 ~~~l~i~DvgGq---------~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
+..+.+|||+|. +.+++.| .++.+++++++|+|.++.+. ...+..+..++..+ ...+.|
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~-------~~~~~~~~~~L~~l----~~~~~p 303 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDR-------EEQIEAVEKVLEEL----GAEDIP 303 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCch-------HHHHHHHHHHHHHh----ccCCCC
Confidence 458999999998 2344433 35889999999999864221 11222223333333 224689
Q ss_pred EEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhH
Q 016253 291 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 370 (392)
Q Consensus 291 iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI 370 (392)
+++++||+|+.... .+. .+ .. . ...++.+||+++.||
T Consensus 304 iIlV~NK~Dl~~~~-----------------------~v~----~~----~~-----------~-~~~~i~iSAktg~GI 340 (351)
T TIGR03156 304 QLLVYNKIDLLDEP-----------------------RIE----RL----EE-----------G-YPEAVFVSAKTGEGL 340 (351)
T ss_pred EEEEEEeecCCChH-----------------------hHH----HH----Hh-----------C-CCCEEEEEccCCCCH
Confidence 99999999985320 000 00 00 0 012468999999999
Q ss_pred HHHHHHHHHH
Q 016253 371 KKTFKLVDET 380 (392)
Q Consensus 371 ~~vF~~v~~~ 380 (392)
+.+++.+.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.61 E-value=2.4e-07 Score=97.89 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=72.5
Q ss_pred cccccceeEEecCCccccccc------hhcccc--ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 217 KKSGEVYRLFDVGGQRNERRK------WIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~------w~~yf~--~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
..++.++++|||+|+.++... +..|+. +++++++|+|.++. +..+.+...+.. .+
T Consensus 37 ~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l-------------er~l~l~~ql~~----~~ 99 (591)
T TIGR00437 37 GFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL-------------ERNLYLTLQLLE----LG 99 (591)
T ss_pred EECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc-------------hhhHHHHHHHHh----cC
Confidence 344567899999999887664 566654 78999999997532 223344444433 26
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
+|+++++||+|+.+++- ... + .+-+.+++ .+.++.|||++++
T Consensus 100 ~PiIIVlNK~Dl~~~~~---------------------i~~-d-~~~L~~~l---------------g~pvv~tSA~tg~ 141 (591)
T TIGR00437 100 IPMILALNLVDEAEKKG---------------------IRI-D-EEKLEERL---------------GVPVVPTSATEGR 141 (591)
T ss_pred CCEEEEEehhHHHHhCC---------------------Chh-h-HHHHHHHc---------------CCCEEEEECCCCC
Confidence 89999999999854311 000 1 11111111 1456789999999
Q ss_pred hHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDET 380 (392)
Q Consensus 369 nI~~vF~~v~~~ 380 (392)
|++++|+.+.+.
T Consensus 142 Gi~eL~~~i~~~ 153 (591)
T TIGR00437 142 GIERLKDAIRKA 153 (591)
T ss_pred CHHHHHHHHHHH
Confidence 999999998765
No 191
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.59 E-value=3.1e-07 Score=79.07 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=67.6
Q ss_pred cccceeEEecCCcccccc--------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 219 SGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~--------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
.+..+.+|||+|+..++. .+..++++++++++|+|.++..+. ....++..+ .. .+.|
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-----------~~~~~~~~~-~~---~~~p 107 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTP-----------ADEEIAKYL-RK---SKKP 107 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCc-----------cHHHHHHHH-Hh---cCCC
Confidence 346789999999988655 455678899999999997432111 011111212 11 2489
Q ss_pred EEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhH
Q 016253 291 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 370 (392)
Q Consensus 291 iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI 370 (392)
+++++||+|+..... . ...+... . . -.++.+||+++.++
T Consensus 108 iiiv~nK~D~~~~~~-----------------------~-------~~~~~~~-----~----~--~~~~~~Sa~~~~gv 146 (157)
T cd01894 108 VILVVNKVDNIKEED-----------------------E-------AAEFYSL-----G----F--GEPIPISAEHGRGI 146 (157)
T ss_pred EEEEEECcccCChHH-----------------------H-------HHHHHhc-----C----C--CCeEEEecccCCCH
Confidence 999999999864311 0 0111111 0 0 12468999999999
Q ss_pred HHHHHHHHHH
Q 016253 371 KKTFKLVDET 380 (392)
Q Consensus 371 ~~vF~~v~~~ 380 (392)
+++|+.+.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 192
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.59 E-value=6.8e-07 Score=77.91 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=69.8
Q ss_pred cccceeEEecCCcccccc-----------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 219 SGEVYRLFDVGGQRNERR-----------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~-----------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
.+..+.+||++|+..... ....++++++++++|+|.++-. . .....++..+.. .
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~---~~~~~~~~~~~~----~ 112 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI--------T---EQDLRIAGLILE----E 112 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc--------c---hhHHHHHHHHHh----c
Confidence 344688999999754321 1134567999999999975311 1 112233333322 2
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
+.|+++++||+|+..... ...++..+.+.+.+.. .....++.+||+++
T Consensus 113 ~~~~iiv~nK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~ 160 (174)
T cd01895 113 GKALVIVVNKWDLVEKDS---------------------KTMKEFKKEIRRKLPF-----------LDYAPIVFISALTG 160 (174)
T ss_pred CCCEEEEEeccccCCccH---------------------HHHHHHHHHHHhhccc-----------ccCCceEEEeccCC
Confidence 579999999999864310 1223333444333221 01245778999999
Q ss_pred hhHHHHHHHHHH
Q 016253 368 KLVKKTFKLVDE 379 (392)
Q Consensus 368 ~nI~~vF~~v~~ 379 (392)
.|++.+|+.+..
T Consensus 161 ~~i~~~~~~l~~ 172 (174)
T cd01895 161 QGVDKLFDAIDE 172 (174)
T ss_pred CCHHHHHHHHHH
Confidence 999999998865
No 193
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.57 E-value=5e-07 Score=95.14 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=76.6
Q ss_pred ceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCc
Q 016253 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
.+.+|||+||+.|+.+|..+++.++++++|+|.++= ..... .+.+.++.. .++|+++++||+|+.
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-------~~~qt-~e~i~~l~~-------~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG-------FKPQT-QEALNILRM-------YKTPFVVAANKIDRI 134 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-------CCHhH-HHHHHHHHH-------cCCCEEEEEECCCcc
Confidence 488999999999999999999999999999998531 01111 123333221 268999999999996
Q ss_pred cccccccCccccccccccccCCCCc---ccHHHHHHHHHHHHHHH------hhccCCCCCCCcceeEEEEEeeCchhHHH
Q 016253 302 EKKVLKVPLNVCEWFKDYQPVSTGK---QEIENAYEFVKKKFEEL------YFQSTAPDRVDRVFKIYRTTALDPKLVKK 372 (392)
Q Consensus 302 ~~kl~~~~l~~~~~f~~y~~~~~g~---~~~~~~~~~i~~~f~~~------~~~~~~~~~~~r~~~~~~TsA~d~~nI~~ 372 (392)
...-.. ..+.|+..+. ..+. .++++.+..+...+.+. +..... -...+.+..+||++|+|+.+
T Consensus 135 ~~~~~~---~~~~f~e~sa--k~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~---~~~~v~iVpVSA~tGeGide 206 (590)
T TIGR00491 135 PGWRSH---EGRPFMESFS--KQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTD---FTKTVAIIPISAITGEGIPE 206 (590)
T ss_pred chhhhc---cCchHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhh---cCCCceEEEeecCCCCChhH
Confidence 421100 0111111110 0110 11222222222222211 000000 11236678899999999999
Q ss_pred HHHHHHH
Q 016253 373 TFKLVDE 379 (392)
Q Consensus 373 vF~~v~~ 379 (392)
+...+..
T Consensus 207 Ll~~l~~ 213 (590)
T TIGR00491 207 LLTMLAG 213 (590)
T ss_pred HHHHHHH
Confidence 9887654
No 194
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.57 E-value=1.3e-07 Score=96.34 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=55.3
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+.+....| ..++..+.+|||+||+.+.+....++.+++++|+|+|.++-+. .........+ .
T Consensus 70 g~Tid~~~~~~------~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~t~~~~-~ 134 (426)
T TIGR00483 70 GVTIDVAHWKF------ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF--------EVQPQTREHA-F 134 (426)
T ss_pred CceEEEEEEEE------ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc--------ccCCchHHHH-H
Confidence 44555555666 6667899999999999887766677789999999999864210 0001111111 1
Q ss_pred HHcCCCCCCceEEEEeeCCCCc
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
++.. ....++++++||+|+.
T Consensus 135 ~~~~--~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 135 LART--LGINQLIVAINKMDSV 154 (426)
T ss_pred HHHH--cCCCeEEEEEEChhcc
Confidence 1111 1235899999999985
No 195
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.56 E-value=9e-07 Score=79.72 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=65.2
Q ss_pred cceeEEecCCc----------cccccchhcccccc---CEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 221 EVYRLFDVGGQ----------RNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 221 ~~l~i~DvgGq----------~~~r~~w~~yf~~~---~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
..+.+|||+|. +.++.....|++++ +++++|+|.+.- ....-.+...++ .. .
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~i~~~l----~~---~ 134 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP--------LKELDLQMIEWL----KE---Y 134 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCC--------CCHHHHHHHHHH----HH---c
Confidence 57999999994 33444556667654 578888886421 000001112222 21 2
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
+.|+++++||+|+.... ..+...+.+...+.. ....++.|||+|+
T Consensus 135 ~~~~iiv~nK~Dl~~~~-----------------------~~~~~~~~i~~~l~~------------~~~~~~~~Sa~~~ 179 (196)
T PRK00454 135 GIPVLIVLTKADKLKKG-----------------------ERKKQLKKVRKALKF------------GDDEVILFSSLKK 179 (196)
T ss_pred CCcEEEEEECcccCCHH-----------------------HHHHHHHHHHHHHHh------------cCCceEEEEcCCC
Confidence 57899999999986421 112222222222211 0234568999999
Q ss_pred hhHHHHHHHHHHHH
Q 016253 368 KLVKKTFKLVDETL 381 (392)
Q Consensus 368 ~nI~~vF~~v~~~I 381 (392)
+|++++|+.+.+.+
T Consensus 180 ~gi~~l~~~i~~~~ 193 (196)
T PRK00454 180 QGIDELRAAIAKWL 193 (196)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999887654
No 196
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.56 E-value=4.9e-07 Score=92.93 Aligned_cols=124 Identities=12% Similarity=0.210 Sum_probs=73.1
Q ss_pred cccceeEEecCCccc----ccc---chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC-------C
Q 016253 219 SGEVYRLFDVGGQRN----ERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-------P 284 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~----~r~---~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~-------~ 284 (392)
.+..|.+|||+|... .+. .+..+++.++++|+|+|.++.+.. ......+......+...... .
T Consensus 204 ~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y~~~l~~~~~~~ 280 (500)
T PRK12296 204 GDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAYAPALDGDLGLG 280 (500)
T ss_pred CCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHhhhcccccchhh
Confidence 346799999999632 111 223356789999999998753210 00111222222233322211 0
Q ss_pred CCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEe
Q 016253 285 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 364 (392)
Q Consensus 285 ~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA 364 (392)
.+.+.|+++++||+|+.+.+ +..+.+...+.. +.+.++.+||
T Consensus 281 ~l~~kP~IVVlNKiDL~da~--------------------------el~e~l~~~l~~------------~g~~Vf~ISA 322 (500)
T PRK12296 281 DLAERPRLVVLNKIDVPDAR--------------------------ELAEFVRPELEA------------RGWPVFEVSA 322 (500)
T ss_pred hhcCCCEEEEEECccchhhH--------------------------HHHHHHHHHHHH------------cCCeEEEEEC
Confidence 24568999999999986431 011122222211 1255788999
Q ss_pred eCchhHHHHHHHHHHHHHH
Q 016253 365 LDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 365 ~d~~nI~~vF~~v~~~Il~ 383 (392)
+++++|++++..+.+.+-.
T Consensus 323 ~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 323 ASREGLRELSFALAELVEE 341 (500)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887743
No 197
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.53 E-value=7.6e-07 Score=83.09 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=83.7
Q ss_pred hhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCcccccc-----chhccccccCEEEEEEEccc
Q 016253 182 RLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR-----KWIHLFEGVSAVIFCAAISE 256 (392)
Q Consensus 182 ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~-----~w~~yf~~~~~iifv~dls~ 256 (392)
++.=..|.|.+ .++- .+|+.+....+. ....+.+++||.|||..+-. .....|+++.++|||+|+..
T Consensus 17 ~vIF~~~~p~d--T~~L-~~T~~ve~~~v~-----~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs 88 (232)
T PF04670_consen 17 SVIFHKYSPRD--TLRL-EPTIDVEKSHVR-----FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS 88 (232)
T ss_dssp HHHHS---GGG--GGG------SEEEEEEE-----CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-
T ss_pred HHHHcCCCchh--cccc-CCcCCceEEEEe-----cCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc
Confidence 33335677754 2211 467766665551 24567999999999976544 35778999999999999851
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHH
Q 016253 257 YDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFV 336 (392)
Q Consensus 257 yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i 336 (392)
-+. +.+..++.+.+ +.+... -+++.+.+|..|+|+..+. ..++.++.+
T Consensus 89 ~~~----~~~l~~~~~~i---~~l~~~--sp~~~v~vfiHK~D~l~~~-----------------------~r~~~~~~~ 136 (232)
T PF04670_consen 89 DDY----DEDLAYLSDCI---EALRQY--SPNIKVFVFIHKMDLLSED-----------------------EREEIFRDI 136 (232)
T ss_dssp STC----HHHHHHHHHHH---HHHHHH--STT-EEEEEEE-CCCS-HH-----------------------HHHHHHHHH
T ss_pred ccH----HHHHHHHHHHH---HHHHHh--CCCCeEEEEEeecccCCHH-----------------------HHHHHHHHH
Confidence 110 11222333332 223221 2478999999999996531 123333444
Q ss_pred HHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 337 KKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 337 ~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
.++..+...... ...+.+|.||--| +.+-++|..|...++
T Consensus 137 ~~~i~~~~~~~~-----~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 137 QQRIRDELEDLG-----IEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHHHTT------TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhcc-----ccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 444333321111 1148889999889 688888888777665
No 198
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.53 E-value=1e-06 Score=82.83 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=61.0
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+......+ ..++.++.+|||+|+..+...|..+++.++++|+|+|.++= . ......+|+.
T Consensus 49 g~ti~~~~~~~------~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g---------~--~~~~~~~~~~ 111 (237)
T cd04168 49 GITIFSAVASF------QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG---------V--QAQTRILWRL 111 (237)
T ss_pred CCceeeeeEEE------EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC---------C--CHHHHHHHHH
Confidence 44555555556 66778999999999999999999999999999999997531 1 1123344443
Q ss_pred HHcCCCCCCceEEEEeeCCCCccc
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
+.. .+.|+++|+||+|+.+.
T Consensus 112 ~~~----~~~P~iivvNK~D~~~a 131 (237)
T cd04168 112 LRK----LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHH----cCCCEEEEEECccccCC
Confidence 322 25899999999999753
No 199
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.53 E-value=2.9e-06 Score=87.52 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=50.8
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+-.....| ..++..+.+|||+|++.+.+-...-...++++++|+|..+- . .....+...+..
T Consensus 91 rgiTid~~~~~~------~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G-------~-~~qt~~~~~l~~ 156 (474)
T PRK05124 91 QGITIDVAYRYF------STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG-------V-LDQTRRHSFIAT 156 (474)
T ss_pred cCCCeEeeEEEe------ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-------c-cccchHHHHHHH
Confidence 344444444455 55567899999999988865444446899999999997421 0 000011111111
Q ss_pred HHHcCCCCCCceEEEEeeCCCCc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
.+ ...|+++++||+|+.
T Consensus 157 ~l------g~~~iIvvvNKiD~~ 173 (474)
T PRK05124 157 LL------GIKHLVVAVNKMDLV 173 (474)
T ss_pred Hh------CCCceEEEEEeeccc
Confidence 11 124789999999985
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.49 E-value=1.6e-06 Score=73.71 Aligned_cols=112 Identities=17% Similarity=0.152 Sum_probs=70.4
Q ss_pred ccceeEEecCCcccccc-------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEE
Q 016253 220 GEVYRLFDVGGQRNERR-------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 292 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~-------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ii 292 (392)
...+.+||++|+..... .+..+++++++++||+|.+..... ... .++.... ..+.|++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~---------~~~--~~~~~~~----~~~~~~i 108 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADE---------EEE--KLLELLR----ERGKPVL 108 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCH---------HHH--HHHHHHH----hcCCeEE
Confidence 56899999999876653 445588999999999998643321 111 1222222 2468999
Q ss_pred EEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHH
Q 016253 293 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 372 (392)
Q Consensus 293 L~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~ 372 (392)
+++||.|+.... ....... ....... ......++.+||.++.++..
T Consensus 109 vv~nK~D~~~~~-----------------------~~~~~~~--~~~~~~~---------~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 109 LVLNKIDLLPEE-----------------------EEEELLE--LRLLILL---------LLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEccccCChh-----------------------hHHHHHH--HHHhhcc---------cccCCceEEEeeeccCCHHH
Confidence 999999986431 1111111 0000000 12235677899999999999
Q ss_pred HHHHHHHH
Q 016253 373 TFKLVDET 380 (392)
Q Consensus 373 vF~~v~~~ 380 (392)
+++.+...
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99887754
No 201
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.48 E-value=1.5e-06 Score=88.15 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=70.4
Q ss_pred ccceeEEecCCccc----cccchhc---cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEE
Q 016253 220 GEVYRLFDVGGQRN----ERRKWIH---LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 292 (392)
Q Consensus 220 ~~~l~i~DvgGq~~----~r~~w~~---yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ii 292 (392)
...+.+||++|... .+.+... +.+.++++|+|+|+++.+.. ...+.+..+.+.+... ++.+.+.|++
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~----dp~e~~~~i~~EL~~y--~~~L~~kP~I 278 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGR----DPIEDYEKINKELKLY--NPRLLERPQI 278 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccC----ChHHHHHHHHHHHhhh--chhccCCcEE
Confidence 45799999999742 1223333 45568999999999754210 1122233333333332 2344578999
Q ss_pred EEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHH
Q 016253 293 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 372 (392)
Q Consensus 293 L~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~ 372 (392)
|++||+|+.... +...+ +.+.+ . ..++.+||+++++|++
T Consensus 279 VV~NK~DL~~~~-------------------------e~l~~-----l~~~l---------~--~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 279 VVANKMDLPEAE-------------------------ENLEE-----FKEKL---------G--PKVFPISALTGQGLDE 317 (424)
T ss_pred EEEeCCCCcCCH-------------------------HHHHH-----HHHHh---------C--CcEEEEeCCCCCCHHH
Confidence 999999973210 01111 11111 1 3457899999999999
Q ss_pred HHHHHHHHHHH
Q 016253 373 TFKLVDETLRR 383 (392)
Q Consensus 373 vF~~v~~~Il~ 383 (392)
+++.+.+.+..
T Consensus 318 L~~~L~~~l~~ 328 (424)
T PRK12297 318 LLYAVAELLEE 328 (424)
T ss_pred HHHHHHHHHHh
Confidence 99999877643
No 202
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.47 E-value=1.8e-06 Score=74.07 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=67.1
Q ss_pred ccccceeEEecCCcccccc--------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~--------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
..+..+.+|||+|...... .-..++..++++++|+|.+.-.. ..+ ...+.. ..+.
T Consensus 46 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~----------~~~-~~~~~~------~~~~ 108 (157)
T cd04164 46 IGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLD----------EED-LEILEL------PADK 108 (157)
T ss_pred eCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCC----------HHH-HHHHHh------hcCC
Confidence 3456889999999865432 12246779999999999863111 111 112221 3468
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|+++++||+|+..+... .. ......++.+||+++.|
T Consensus 109 ~vi~v~nK~D~~~~~~~---------------------------------~~-----------~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 109 PIIVVLNKSDLLPDSEL---------------------------------LS-----------LLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEchhcCCcccc---------------------------------cc-----------ccCCCceEEEECCCCCC
Confidence 99999999998643210 00 01124567899999999
Q ss_pred HHHHHHHHHHHH
Q 016253 370 VKKTFKLVDETL 381 (392)
Q Consensus 370 I~~vF~~v~~~I 381 (392)
++.+++.+.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.47 E-value=7.8e-07 Score=81.72 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=48.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++.++.+|||+|++.+...+..+++.++++|+|+|.++- . .......+. ++.. ....++++++|
T Consensus 73 ~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~--------~---~~~~~~~~~-~~~~--~~~~~iIvviN 138 (208)
T cd04166 73 STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG--------V---LEQTRRHSY-ILSL--LGIRHVVVAVN 138 (208)
T ss_pred ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC--------c---cHhHHHHHH-HHHH--cCCCcEEEEEE
Confidence 45567899999999998877788889999999999997531 0 111111111 1111 11246888999
Q ss_pred CCCCc
Q 016253 297 KFDIF 301 (392)
Q Consensus 297 K~Dl~ 301 (392)
|+|+.
T Consensus 139 K~D~~ 143 (208)
T cd04166 139 KMDLV 143 (208)
T ss_pred chhcc
Confidence 99985
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.45 E-value=1.9e-06 Score=93.36 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=70.9
Q ss_pred cccceeEEecCCcc-ccccch----------hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 219 SGEVYRLFDVGGQR-NERRKW----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 219 ~~~~l~i~DvgGq~-~~r~~w----------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
.+..+.+|||+|++ ..+..| ..+++.++++|+|+|.++-.+ .....++..+.. .
T Consensus 496 ~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-----------~~~~~i~~~~~~----~ 560 (712)
T PRK09518 496 DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-----------EQDLKVMSMAVD----A 560 (712)
T ss_pred CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----c
Confidence 44567899999975 233333 234678999999999863211 112334554443 3
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
+.|++|++||+|+.++.. .+...+.+...+.. -.....+++||+++
T Consensus 561 ~~piIiV~NK~DL~~~~~-----------------------~~~~~~~~~~~l~~-----------~~~~~ii~iSAktg 606 (712)
T PRK09518 561 GRALVLVFNKWDLMDEFR-----------------------RQRLERLWKTEFDR-----------VTWARRVNLSAKTG 606 (712)
T ss_pred CCCEEEEEEchhcCChhH-----------------------HHHHHHHHHHhccC-----------CCCCCEEEEECCCC
Confidence 689999999999854210 01111111111110 01134578999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 016253 368 KLVKKTFKLVDETLRR 383 (392)
Q Consensus 368 ~nI~~vF~~v~~~Il~ 383 (392)
.||+++|+.+.+...+
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887754
No 205
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.43 E-value=1.1e-06 Score=89.73 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=67.1
Q ss_pred ccccceeEEecCCccc--------cccchhccccccCEEEEEEEcccccccccchhhhhhH-HHHHHHHHHHHcCCCCCC
Q 016253 218 KSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCFEK 288 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~--------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl-~es~~~f~~i~~~~~~~~ 288 (392)
..+..+.+|||+|+.. .+..+..++++++++|||+|.++- .... .+...++.. .+
T Consensus 46 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~---------~~~~~~~~~~~l~~-------~~ 109 (435)
T PRK00093 46 WLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG---------LTPADEEIAKILRK-------SN 109 (435)
T ss_pred ECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHHHHHHHHHH-------cC
Confidence 3447899999999987 445567788999999999997531 1111 112222222 15
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|+++++||+|+.+.. ....++ ..+. . -.++.+||+++.
T Consensus 110 ~piilv~NK~D~~~~~-------------------------~~~~~~-----~~lg----~-------~~~~~iSa~~g~ 148 (435)
T PRK00093 110 KPVILVVNKVDGPDEE-------------------------ADAYEF-----YSLG----L-------GEPYPISAEHGR 148 (435)
T ss_pred CcEEEEEECccCccch-------------------------hhHHHH-----HhcC----C-------CCCEEEEeeCCC
Confidence 8999999999964210 001111 1110 0 014678999999
Q ss_pred hHHHHHHHHHH
Q 016253 369 LVKKTFKLVDE 379 (392)
Q Consensus 369 nI~~vF~~v~~ 379 (392)
||.++|+.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999988876
No 206
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.40 E-value=1.7e-06 Score=77.34 Aligned_cols=102 Identities=20% Similarity=0.363 Sum_probs=58.7
Q ss_pred ceeEEecCCccc------cccch----hccccc---cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 222 VYRLFDVGGQRN------ERRKW----IHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 222 ~l~i~DvgGq~~------~r~~w----~~yf~~---~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
.+.+|||+|... .+..| ..|++. ++++++|+|.+. . .. .....++..+ .. .+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~---~------~~--~~~~~~~~~~-~~---~~ 129 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH---P------LK--ELDLEMLEWL-RE---RG 129 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC---C------CC--HHHHHHHHHH-HH---cC
Confidence 689999999632 23334 356654 579999999742 0 00 0111222222 21 25
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|+++++||+|+..+ .+.+...+.+.+.+... .....++.+||++++
T Consensus 130 ~pviiv~nK~D~~~~-----------------------~~~~~~~~~i~~~l~~~----------~~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 130 IPVLIVLTKADKLKK-----------------------SELNKQLKKIKKALKKD----------ADDPSVQLFSSLKKT 176 (179)
T ss_pred CCEEEEEECcccCCH-----------------------HHHHHHHHHHHHHHhhc----------cCCCceEEEECCCCC
Confidence 899999999998632 12233334444444321 112356889999999
Q ss_pred hHH
Q 016253 369 LVK 371 (392)
Q Consensus 369 nI~ 371 (392)
||+
T Consensus 177 gi~ 179 (179)
T TIGR03598 177 GID 179 (179)
T ss_pred CCC
Confidence 873
No 207
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.40 E-value=2.6e-06 Score=86.95 Aligned_cols=116 Identities=20% Similarity=0.325 Sum_probs=73.5
Q ss_pred ccccceeEEecCCccccccch-----------hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 218 KSGEVYRLFDVGGQRNERRKW-----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w-----------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
..+..+.+|||+|.+...+.+ ..+++.++++|+|+|.++- .. .....++..+..
T Consensus 218 ~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~-------~~----~~~~~i~~~~~~---- 282 (435)
T PRK00093 218 RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG-------IT----EQDLRIAGLALE---- 282 (435)
T ss_pred ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC-------CC----HHHHHHHHHHHH----
Confidence 345678999999986654432 2467789999999997531 01 112233333332
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.+.|+++++||+|+..+. ..++..+.+...+..+ ..+.++++||++
T Consensus 283 ~~~~~ivv~NK~Dl~~~~-----------------------~~~~~~~~~~~~l~~~-----------~~~~i~~~SA~~ 328 (435)
T PRK00093 283 AGRALVIVVNKWDLVDEK-----------------------TMEEFKKELRRRLPFL-----------DYAPIVFISALT 328 (435)
T ss_pred cCCcEEEEEECccCCCHH-----------------------HHHHHHHHHHHhcccc-----------cCCCEEEEeCCC
Confidence 257999999999986321 1122223333332211 125678999999
Q ss_pred chhHHHHHHHHHHHHH
Q 016253 367 PKLVKKTFKLVDETLR 382 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il 382 (392)
+.||.++|+.+.+...
T Consensus 329 ~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 329 GQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999877553
No 208
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.37 E-value=1.6e-06 Score=93.86 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=69.6
Q ss_pred ccccceeEEecCCccc--------cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~--------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
..+..+.+|||+|++. ++..+..++++++++|||+|.++ .....++ .+.+.+ .. .+.
T Consensus 320 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~---------~~~~~d~--~i~~~L-r~---~~~ 384 (712)
T PRK09518 320 WAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV---------GLTSTDE--RIVRML-RR---AGK 384 (712)
T ss_pred ECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC---------CCCHHHH--HHHHHH-Hh---cCC
Confidence 3456899999999874 34556678899999999999752 1111111 122222 21 368
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|+++++||+|+.... ....+ |..+. . . ..+.+||+++.|
T Consensus 385 pvIlV~NK~D~~~~~-------------------------~~~~~-----~~~lg----~----~---~~~~iSA~~g~G 423 (712)
T PRK09518 385 PVVLAVNKIDDQASE-------------------------YDAAE-----FWKLG----L----G---EPYPISAMHGRG 423 (712)
T ss_pred CEEEEEECcccccch-------------------------hhHHH-----HHHcC----C----C---CeEEEECCCCCC
Confidence 999999999975320 00111 11110 0 1 125799999999
Q ss_pred HHHHHHHHHHHHHH
Q 016253 370 VKKTFKLVDETLRR 383 (392)
Q Consensus 370 I~~vF~~v~~~Il~ 383 (392)
|.++|+.+.+.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999887754
No 209
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.33 E-value=2.1e-06 Score=81.03 Aligned_cols=97 Identities=9% Similarity=0.187 Sum_probs=63.5
Q ss_pred cccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCcc
Q 016253 232 RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 311 (392)
Q Consensus 232 ~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~ 311 (392)
++++.+.+.|+++++++++|+|+++-+ .+.+.+..++... .+ .++|++|++||+||..++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~------~s~~~l~r~l~~~----~~---~~i~~vIV~NK~DL~~~~~------ 84 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPE------LSLNQLDRFLVVA----EA---QNIEPIIVLNKIDLLDDED------ 84 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCC------CCHHHHHHHHHHH----HH---CCCCEEEEEECcccCCCHH------
Confidence 577788888999999999999986321 1334444443322 22 4689999999999854211
Q ss_pred ccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 312 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 312 ~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.. +++ +.|.. ..+.+++|||++++||+++|+.+..
T Consensus 85 -----------------~~~--~~~-~~~~~------------~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 85 -----------------MEK--EQL-DIYRN------------IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -----------------HHH--HHH-HHHHH------------CCCeEEEEecCCchhHHHHHhhhcC
Confidence 010 111 12221 1245678999999999999988764
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.33 E-value=1.6e-06 Score=87.88 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=73.6
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
...+.+||++||+.|.+.|......++++|+|+|.++-. ......+.+.++. . ....|+++++||+|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l~~l~-~-----~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHLMALE-I-----IGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHHHHHH-H-----cCCCeEEEEEEccc
Confidence 457899999999999999999889999999999975310 0111122222221 1 12247899999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+....-.. ...++..+++...+ ...+.++.+||++++|++.+++.+..
T Consensus 146 l~~~~~~~-------------------~~~~~i~~~l~~~~-------------~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 146 LVSKEKAL-------------------ENYEEIKEFVKGTV-------------AENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred cCCHHHHH-------------------HHHHHHHhhhhhcc-------------cCCCeEEEEECCCCCChHHHHHHHHH
Confidence 86421000 01122222221110 11255778999999999999998876
Q ss_pred HH
Q 016253 380 TL 381 (392)
Q Consensus 380 ~I 381 (392)
.+
T Consensus 194 ~l 195 (406)
T TIGR03680 194 FI 195 (406)
T ss_pred hC
Confidence 54
No 211
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.32 E-value=6.6e-06 Score=77.21 Aligned_cols=130 Identities=17% Similarity=0.299 Sum_probs=67.7
Q ss_pred cceeEEecCCc-cccccchhcc-------cc--ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 221 EVYRLFDVGGQ-RNERRKWIHL-------FE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 221 ~~l~i~DvgGq-~~~r~~w~~y-------f~--~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
..+.+.||.|| +.| -|..- +. .-+.|+||+|... +++...+-..+-.=-+++ ...+.|
T Consensus 116 ~~~~liDTPGQIE~F--tWSAsGsIIte~lass~ptvv~YvvDt~r-------s~~p~tFMSNMlYAcSil---yktklp 183 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAF--TWSASGSIITETLASSFPTVVVYVVDTPR-------STSPTTFMSNMLYACSIL---YKTKLP 183 (366)
T ss_pred cCEEEEcCCCceEEE--EecCCccchHhhHhhcCCeEEEEEecCCc-------CCCchhHHHHHHHHHHHH---HhccCC
Confidence 35667777777 322 23221 11 2367899998631 222222222222112222 224689
Q ss_pred EEEEeeCCCCccccccccCccccccccccc---cCCC----Cc-ccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEE
Q 016253 291 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQ---PVST----GK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT 362 (392)
Q Consensus 291 iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~---~~~~----g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~T 362 (392)
+|+++||+|+...... .+|-.+|- -+.. +- .++...+......|.+ .+...-+
T Consensus 184 ~ivvfNK~Dv~d~~fa------~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~-------------~lrtv~V 244 (366)
T KOG1532|consen 184 FIVVFNKTDVSDSEFA------LEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR-------------SLRTVGV 244 (366)
T ss_pred eEEEEecccccccHHH------HHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh-------------hCceEEE
Confidence 9999999999765442 24544441 0000 00 1122222222222222 1334468
Q ss_pred EeeCchhHHHHHHHHHHHH
Q 016253 363 TALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 363 sA~d~~nI~~vF~~v~~~I 381 (392)
||.+|.+.+..|.+|.+.+
T Consensus 245 Ss~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 245 SSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred ecccCCcHHHHHHHHHHHH
Confidence 9999999999999988776
No 212
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.32 E-value=3.5e-06 Score=78.32 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=53.9
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+++.+.+|||+|++.|......+++.++++|+|+|.++ .. ..+....+..... .++|++|++||
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~-------g~----~~~t~~~l~~~~~----~~~p~ilviNK 134 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE-------GV----CVQTETVLRQALK----ERVKPVLVINK 134 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC-------CC----CHHHHHHHHHHHH----cCCCEEEEEEC
Confidence 457889999999999999999999999999999999752 11 1233344444432 25799999999
Q ss_pred CCCccc
Q 016253 298 FDIFEK 303 (392)
Q Consensus 298 ~Dl~~~ 303 (392)
+|+...
T Consensus 135 iD~~~~ 140 (222)
T cd01885 135 IDRLIL 140 (222)
T ss_pred CCcchh
Confidence 998643
No 213
>PLN03126 Elongation factor Tu; Provisional
Probab=98.32 E-value=8.1e-06 Score=84.16 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=47.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce-EEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~-iiL~~ 295 (392)
+.++..+.++|+.|++.|-+-...-...++++++|+|..+ . -.....+.+..+.. .++| ++++.
T Consensus 140 ~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~--------G---~~~qt~e~~~~~~~----~gi~~iIvvv 204 (478)
T PLN03126 140 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD--------G---PMPQTKEHILLAKQ----VGVPNMVVFL 204 (478)
T ss_pred ecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC--------C---CcHHHHHHHHHHHH----cCCCeEEEEE
Confidence 4456688999999998876655555667899999999642 1 11223344433322 1466 88999
Q ss_pred eCCCCcc
Q 016253 296 NKFDIFE 302 (392)
Q Consensus 296 NK~Dl~~ 302 (392)
||+|+..
T Consensus 205 NK~Dl~~ 211 (478)
T PLN03126 205 NKQDQVD 211 (478)
T ss_pred ecccccC
Confidence 9999853
No 214
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.31 E-value=7.7e-06 Score=70.41 Aligned_cols=112 Identities=20% Similarity=0.252 Sum_probs=69.3
Q ss_pred ccccceeEEecCCcccccc--------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~--------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
..+..+.+||++|...... .+..++.+++++++|+|.++... ... ..+...+... +.
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~--------~~~---~~~~~~~~~~----~~ 112 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG--------EGD---EFILELLKKS----KT 112 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC--------chH---HHHHHHHHHh----CC
Confidence 3456899999999865433 34556889999999999864311 111 1112222221 57
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|+++++||+|+.... ....+....+..+ .....++.+||+++.+
T Consensus 113 ~~iiv~nK~Dl~~~~----------------------~~~~~~~~~~~~~--------------~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 113 PVILVLNKIDLVKDK----------------------EDLLPLLEKLKEL--------------GPFAEIFPISALKGEN 156 (168)
T ss_pred CEEEEEEchhccccH----------------------HHHHHHHHHHHhc--------------cCCCceEEEEeccCCC
Confidence 999999999985210 1122222222211 1123457899999999
Q ss_pred HHHHHHHHHHH
Q 016253 370 VKKTFKLVDET 380 (392)
Q Consensus 370 I~~vF~~v~~~ 380 (392)
++++|+.+.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999988653
No 215
>PRK13351 elongation factor G; Reviewed
Probab=98.31 E-value=2.4e-06 Score=92.26 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=62.4
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|++.....+ ..++..+.+|||+|+..+...|..+++.++++|+|+|.++-.+ ......|.
T Consensus 57 r~~ti~~~~~~~------~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-----------~~~~~~~~ 119 (687)
T PRK13351 57 RGITIESAATSC------DWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-----------PQTETVWR 119 (687)
T ss_pred cCCCcccceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-----------HHHHHHHH
Confidence 455555555556 5667899999999999999999999999999999999753211 12234444
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
.+.. .++|+++|+||+|+...
T Consensus 120 ~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 120 QADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHh----cCCCEEEEEECCCCCCC
Confidence 4332 25899999999999865
No 216
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.31 E-value=5.3e-06 Score=88.11 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=69.9
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce-EEEEeeCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKFD 299 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~-iiL~~NK~D 299 (392)
..+.+|||+|++.|-+.....+.+++++++|+|..+ .-+..+.+.+. ++.. . ++| +++++||+|
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~-il~~--l-gi~~iIVVlNKiD 115 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLA-ILQL--T-GNPMLTVALTKAD 115 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHH-HHHH--c-CCCeEEEEEECCc
Confidence 458999999999987777777899999999999742 11112222222 2221 1 244 689999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.++. ..+...+-+.+.+.... -....++.+||++++||+.+++.+.+
T Consensus 116 lv~~~-----------------------~~~~v~~ei~~~l~~~~---------~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 116 RVDEA-----------------------RIAEVRRQVKAVLREYG---------FAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred cCCHH-----------------------HHHHHHHHHHHHHHhcC---------CCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 85321 11111122222222110 01244678999999999999998876
Q ss_pred HH
Q 016253 380 TL 381 (392)
Q Consensus 380 ~I 381 (392)
..
T Consensus 164 ~~ 165 (614)
T PRK10512 164 LP 165 (614)
T ss_pred hh
Confidence 44
No 217
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.31 E-value=6.8e-06 Score=76.97 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=29.7
Q ss_pred cccceeEEecCCccccc-------cchhccccccCEEEEEEEccc
Q 016253 219 SGEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISE 256 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r-------~~w~~yf~~~~~iifv~dls~ 256 (392)
++..+++||++|+.... +.+..++++++++++|+|.++
T Consensus 45 ~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 45 KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred CCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 45689999999985432 234568999999999999864
No 218
>PRK11058 GTPase HflX; Provisional
Probab=98.29 E-value=2.4e-06 Score=86.89 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=67.4
Q ss_pred ceeEEecCCcccc--ccchh------ccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEE
Q 016253 222 VYRLFDVGGQRNE--RRKWI------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 293 (392)
Q Consensus 222 ~l~i~DvgGq~~~--r~~w~------~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL 293 (392)
.+.+|||+|..+. ...|. .++++++++|+|+|.|+- .....+..+..++..+. ..++|+++
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~-------~~~e~l~~v~~iL~el~----~~~~pvIi 314 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADV-------RVQENIEAVNTVLEEID----AHEIPTLL 314 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCc-------cHHHHHHHHHHHHHHhc----cCCCCEEE
Confidence 6789999998432 33343 346899999999998631 11122222334444432 23689999
Q ss_pred EeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHH
Q 016253 294 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 373 (392)
Q Consensus 294 ~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~v 373 (392)
++||+|+..... ...+ . . .. ..+ .++.+||+++.||+.+
T Consensus 315 V~NKiDL~~~~~---------------------~~~~----~----~-~~----------~~~-~~v~ISAktG~GIdeL 353 (426)
T PRK11058 315 VMNKIDMLDDFE---------------------PRID----R----D-EE----------NKP-IRVWLSAQTGAGIPLL 353 (426)
T ss_pred EEEcccCCCchh---------------------HHHH----H----H-hc----------CCC-ceEEEeCCCCCCHHHH
Confidence 999999853210 0000 0 0 00 001 1356999999999999
Q ss_pred HHHHHHHHHH
Q 016253 374 FKLVDETLRR 383 (392)
Q Consensus 374 F~~v~~~Il~ 383 (392)
|+.+.+.+..
T Consensus 354 ~e~I~~~l~~ 363 (426)
T PRK11058 354 FQALTERLSG 363 (426)
T ss_pred HHHHHHHhhh
Confidence 9999887743
No 219
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.28 E-value=8.2e-06 Score=82.10 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=75.8
Q ss_pred ccceeeeeEEEeeccCCCccccccceeEEecCCccccc-------cchhccccccCEEEEEEEcccccccccchhhhhhH
Q 016253 198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRM 270 (392)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r-------~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl 270 (392)
+|.|..|+.... ....+.++||.|.-.-. .....+++.++++++|+|++.+|. .+.+
T Consensus 193 T~~p~~Giv~~~---------~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~ 256 (390)
T PRK12298 193 TLVPNLGVVRVD---------DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPV 256 (390)
T ss_pred ccCcEEEEEEeC---------CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChH
Confidence 456667754321 12358999999985321 112335788999999999874421 1222
Q ss_pred HHHHHHHHHHHc-CCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCC
Q 016253 271 METKELFDWVLK-QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTA 349 (392)
Q Consensus 271 ~es~~~f~~i~~-~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~ 349 (392)
.+...+.+++.. .+.+.+.|++|++||+|+..+. .+.+..+.+.+.+
T Consensus 257 e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-----------------------el~~~l~~l~~~~--------- 304 (390)
T PRK12298 257 ENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-----------------------EAEERAKAIVEAL--------- 304 (390)
T ss_pred HHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-----------------------HHHHHHHHHHHHh---------
Confidence 222333333332 2334568999999999985421 0111111111111
Q ss_pred CCCCCcceeEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 350 PDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 350 ~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
.....++.+||+++.+|+.+++.+.+.+-
T Consensus 305 ----~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 305 ----GWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ----CCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 00012467899999999988888877663
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.27 E-value=1.7e-06 Score=82.64 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=60.4
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+......+ +.++.++.+|||+|+..|...+..+++.++++|+|+|.++-- . .....+|+
T Consensus 55 rg~si~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~---------~--~~~~~i~~ 117 (267)
T cd04169 55 RGISVTSSVMQF------EYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV---------E--PQTRKLFE 117 (267)
T ss_pred CCCCeEEEEEEE------eeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc---------c--HHHHHHHH
Confidence 455555566667 778889999999999999887788899999999999975311 0 11123333
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
.. .. .++|+++|+||+|+...
T Consensus 118 ~~-~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 118 VC-RL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HH-Hh---cCCCEEEEEECCccCCC
Confidence 22 21 36899999999998654
No 221
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.24 E-value=1.7e-06 Score=77.62 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=54.0
Q ss_pred cccceeEEecCCccccccchhcc---ccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC--CCCceEEE
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFML 293 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~y---f~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~--~~~~~iiL 293 (392)
.+-.+++.|+.|+.+.|..-..+ ..++.+||||+|.+. ....+.+.-+.+..++.++. ...+|++|
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~---------~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLI 117 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST---------DQKELRDVAEYLYDILSDTEVQKNKPPILI 117 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT---------HHHHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc---------chhhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence 34478999999999999865554 789999999999652 33446667777666666543 34689999
Q ss_pred EeeCCCCccc
Q 016253 294 FLNKFDIFEK 303 (392)
Q Consensus 294 ~~NK~Dl~~~ 303 (392)
++||+|++.+
T Consensus 118 acNK~Dl~~A 127 (181)
T PF09439_consen 118 ACNKQDLFTA 127 (181)
T ss_dssp EEE-TTSTT-
T ss_pred EEeCcccccc
Confidence 9999999865
No 222
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.23 E-value=4.5e-06 Score=84.92 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=68.2
Q ss_pred ccccceeEEecCCc--------cccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQ--------RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq--------~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
..+..+.+|||+|. +..+..+..+++++++++||+|.++- -...-.+...++.. .+.
T Consensus 44 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~-------~~~ 108 (429)
T TIGR03594 44 WGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG--------LTPEDEEIAKWLRK-------SGK 108 (429)
T ss_pred ECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHH-------hCC
Confidence 34567999999996 44566677889999999999997420 01111122222222 257
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|+++++||+|+.+... ... + |..+. --.++.+||+.+.+
T Consensus 109 piilVvNK~D~~~~~~----------------------~~~---~-----~~~lg-----------~~~~~~vSa~~g~g 147 (429)
T TIGR03594 109 PVILVANKIDGKKEDA----------------------VAA---E-----FYSLG-----------FGEPIPISAEHGRG 147 (429)
T ss_pred CEEEEEECccCCcccc----------------------cHH---H-----HHhcC-----------CCCeEEEeCCcCCC
Confidence 9999999999864311 000 0 11110 01246789999999
Q ss_pred HHHHHHHHHHHH
Q 016253 370 VKKTFKLVDETL 381 (392)
Q Consensus 370 I~~vF~~v~~~I 381 (392)
+.++++.+.+.+
T Consensus 148 v~~ll~~i~~~l 159 (429)
T TIGR03594 148 IGDLLDAILELL 159 (429)
T ss_pred hHHHHHHHHHhc
Confidence 999888887665
No 223
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.23 E-value=8.8e-06 Score=77.82 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=43.1
Q ss_pred cceeEEecCCcccccc--------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEE
Q 016253 221 EVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 292 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~--------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ii 292 (392)
..+.+|||+|+...+. .+..+++++++++||+|.++... .. ..++..+.+ .+.|++
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~----------~~--~~i~~~l~~----~~~p~i 111 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG----------DG--EFVLTKLQN----LKRPVV 111 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc----------hH--HHHHHHHHh----cCCCEE
Confidence 4689999999854322 23457889999999999864211 11 112222222 258999
Q ss_pred EEeeCCCCc
Q 016253 293 LFLNKFDIF 301 (392)
Q Consensus 293 L~~NK~Dl~ 301 (392)
+++||+|+.
T Consensus 112 lV~NK~Dl~ 120 (270)
T TIGR00436 112 LTRNKLDNK 120 (270)
T ss_pred EEEECeeCC
Confidence 999999985
No 224
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.21 E-value=6.1e-06 Score=86.10 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=60.2
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+......| +.+++.+.+|||+|+..|...+..+++.++++|+|+|.++- .. .....+|+
T Consensus 63 rgiSi~~~~~~~------~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g---------v~--~~t~~l~~ 125 (526)
T PRK00741 63 RGISVTSSVMQF------PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG---------VE--PQTRKLME 125 (526)
T ss_pred hCCceeeeeEEE------EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC---------CC--HHHHHHHH
Confidence 344555555566 66788999999999999988888889999999999997531 00 11233443
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
.. . ..++|+++|+||+|+...
T Consensus 126 ~~-~---~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 126 VC-R---LRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HH-H---hcCCCEEEEEECCccccc
Confidence 32 2 236899999999998753
No 225
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.20 E-value=9.3e-06 Score=85.80 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=47.4
Q ss_pred eeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCc
Q 016253 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 223 l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
+.+|||+|++.|+..|..++..++++|+|+|.++= .... ..+.+.++.. .++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-------~~~q-t~e~i~~~~~-------~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-------FQPQ-TIEAINILKR-------RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-------CCHh-HHHHHHHHHH-------cCCCEEEEEECcCCc
Confidence 68999999999999999999999999999997531 0111 1122232221 368999999999985
No 226
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=0.00024 Score=71.48 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=75.1
Q ss_pred cccccceeEEecCCccccccchh--ccc---------cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWI--HLF---------EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~--~yf---------~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~ 285 (392)
+.++-++.+.||+|-++-.+... .+| +.++.|++|+|-++ .-.+.-+.+-.-+.+
T Consensus 222 e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~ia~~i~~--- 287 (444)
T COG1160 222 ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRIAGLIEE--- 287 (444)
T ss_pred EECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHHHHHHHH---
Confidence 45677899999999986555443 233 35789999999642 111122333333333
Q ss_pred CCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEee
Q 016253 286 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL 365 (392)
Q Consensus 286 ~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~ 365 (392)
...+++++.||-|+.++.- ...++..+-+..+|..+ .....+++||+
T Consensus 288 -~g~~~vIvvNKWDl~~~~~---------------------~~~~~~k~~i~~~l~~l-----------~~a~i~~iSA~ 334 (444)
T COG1160 288 -AGRGIVIVVNKWDLVEEDE---------------------ATMEEFKKKLRRKLPFL-----------DFAPIVFISAL 334 (444)
T ss_pred -cCCCeEEEEEccccCCchh---------------------hHHHHHHHHHHHHhccc-----------cCCeEEEEEec
Confidence 3579999999999876410 12233333344433322 11346899999
Q ss_pred CchhHHHHHHHHHHHHH
Q 016253 366 DPKLVKKTFKLVDETLR 382 (392)
Q Consensus 366 d~~nI~~vF~~v~~~Il 382 (392)
.+.++..+|+++.+..-
T Consensus 335 ~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 335 TGQGLDKLFEAIKEIYE 351 (444)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99999999999887764
No 227
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.17 E-value=2.6e-05 Score=71.02 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=52.4
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+......| +.++..+.+.||.|+..+-.-...-...++++++|+|.++ .. .......+..
T Consensus 50 g~Ti~~~~~~~------~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~---------g~--~~~~~~~~~~ 112 (195)
T cd01884 50 GITINTAHVEY------ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD---------GP--MPQTREHLLL 112 (195)
T ss_pred CccEEeeeeEe------cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC---------CC--cHHHHHHHHH
Confidence 34444444556 5556688999999998776656666778999999999742 11 1122233333
Q ss_pred HHcCCCCCCce-EEEEeeCCCCc
Q 016253 280 VLKQPCFEKTS-FMLFLNKFDIF 301 (392)
Q Consensus 280 i~~~~~~~~~~-iiL~~NK~Dl~ 301 (392)
+... +.| ++++.||+|+.
T Consensus 113 ~~~~----~~~~iIvviNK~D~~ 131 (195)
T cd01884 113 ARQV----GVPYIVVFLNKADMV 131 (195)
T ss_pred HHHc----CCCcEEEEEeCCCCC
Confidence 3221 355 88999999985
No 228
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.13 E-value=8.3e-06 Score=82.73 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=66.6
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
..+.+|||+|++.+.+-...-..+++++++|+|.++- .......+.+.++.. ....|+++++||+|+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~-------~~~~~t~~~l~~l~~------~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP-------CPQPQTKEHLMALDI------IGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-------CCChhHHHHHHHHHH------cCCCcEEEEEEeecc
Confidence 5789999999987765333333446999999998521 001111122222221 112478999999998
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
.++.... ...++..+++...+ ...+.++.+||+++.||+.+|+.+.+.
T Consensus 152 ~~~~~~~-------------------~~~~~i~~~l~~~~-------------~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 152 VSKERAL-------------------ENYEQIKEFVKGTV-------------AENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred ccchhHH-------------------HHHHHHHHHhcccc-------------CCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 6421000 01112222211100 112456789999999999999988775
Q ss_pred H
Q 016253 381 L 381 (392)
Q Consensus 381 I 381 (392)
+
T Consensus 200 l 200 (411)
T PRK04000 200 I 200 (411)
T ss_pred C
Confidence 5
No 229
>PRK00089 era GTPase Era; Reviewed
Probab=98.08 E-value=2.8e-05 Score=75.07 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=43.9
Q ss_pred ccceeEEecCCcccccc--------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceE
Q 016253 220 GEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 291 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~--------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~i 291 (392)
+..+.+|||+|....+. .+..++.++++++||+|.++. +.+....+...+.. .+.|+
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~------------~~~~~~~i~~~l~~---~~~pv 116 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK------------IGPGDEFILEKLKK---VKTPV 116 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC------------CChhHHHHHHHHhh---cCCCE
Confidence 46899999999855432 234467899999999998641 01111222222221 25899
Q ss_pred EEEeeCCCCc
Q 016253 292 MLFLNKFDIF 301 (392)
Q Consensus 292 iL~~NK~Dl~ 301 (392)
++++||+|+.
T Consensus 117 ilVlNKiDl~ 126 (292)
T PRK00089 117 ILVLNKIDLV 126 (292)
T ss_pred EEEEECCcCC
Confidence 9999999996
No 230
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=1e-05 Score=73.26 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=58.7
Q ss_pred cceeEEecCCccccccchhcccc---ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC--CCCCceEEEEe
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFMLFL 295 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~---~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~--~~~~~~iiL~~ 295 (392)
-..++.|+.|+.+-|.+...||. .+.+|+||+|...|+. ...+.-+.+..++.+. .-..+|+++.+
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k---------~vrdvaefLydil~~~~~~~~~~~vLIaC 152 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLK---------NVRDVAEFLYDILLDSRVKKNKPPVLIAC 152 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccch---------hhHHHHHHHHHHHHhhccccCCCCEEEEe
Confidence 34899999999999999999998 7999999999876544 3345555565555443 34568999999
Q ss_pred eCCCCcccc
Q 016253 296 NKFDIFEKK 304 (392)
Q Consensus 296 NK~Dl~~~k 304 (392)
||+|++-+|
T Consensus 153 NKqDl~tAk 161 (238)
T KOG0090|consen 153 NKQDLFTAK 161 (238)
T ss_pred cchhhhhcC
Confidence 999998653
No 231
>PRK12740 elongation factor G; Reviewed
Probab=98.03 E-value=1.4e-05 Score=86.10 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=62.8
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|++.....+ ..+++.+.+|||+|+..+...|..+++.++++|+|+|.++-.+ ......|.
T Consensus 44 rgiTi~~~~~~~------~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-----------~~~~~~~~ 106 (668)
T PRK12740 44 RGISITSAATTC------EWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVE-----------PQTETVWR 106 (668)
T ss_pred cCCCeeeceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-----------HHHHHHHH
Confidence 456666666666 6677899999999999888889999999999999999864211 12233444
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
.+.. .+.|+++|+||+|+...
T Consensus 107 ~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 107 QAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHH----cCCCEEEEEECCCCCCC
Confidence 4332 25799999999998754
No 232
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.02 E-value=1.2e-05 Score=76.93 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=62.1
Q ss_pred ccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHH
Q 016253 198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277 (392)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f 277 (392)
.|..|+......| ..++..+.+|||+|+..+..-|..+++.++++|+|+|.++-.+ ......|
T Consensus 47 ~rgiti~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~-----------~~t~~~~ 109 (270)
T cd01886 47 ERGITIQSAATTC------FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE-----------PQTETVW 109 (270)
T ss_pred CCCcCeeccEEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC-----------HHHHHHH
Confidence 4455655555666 6677899999999999999999999999999999999753211 1122334
Q ss_pred HHHHcCCCCCCceEEEEeeCCCCccc
Q 016253 278 DWVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 278 ~~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
+.+.. .+.|+++|.||+|+.+.
T Consensus 110 ~~~~~----~~~p~ivviNK~D~~~a 131 (270)
T cd01886 110 RQADR----YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHH----cCCCEEEEEECCCCCCC
Confidence 44332 35799999999999753
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.02 E-value=8.8e-06 Score=74.92 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=51.4
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+.+.+.+|||+|++.+...+..++..++++|+|+|.++-.. .....++..... .+.|+++++||
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-----------~~~~~~~~~~~~----~~~p~iiviNK 132 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-----------SNTERLIRHAIL----EGLPIVLVINK 132 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----cCCCEEEEEEC
Confidence 345689999999999999999999999999999999853211 112233333322 24899999999
Q ss_pred CCCc
Q 016253 298 FDIF 301 (392)
Q Consensus 298 ~Dl~ 301 (392)
+|+.
T Consensus 133 ~D~~ 136 (213)
T cd04167 133 IDRL 136 (213)
T ss_pred cccC
Confidence 9986
No 234
>PRK12736 elongation factor Tu; Reviewed
Probab=98.00 E-value=6.8e-05 Score=75.72 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=46.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce-EEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~-iiL~~ 295 (392)
..++..+.++||+|++.|.+....-...++++++|+|.++ .-.....+.+..+... ++| +++++
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~~----g~~~~Ivvi 135 (394)
T PRK12736 71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQV----GVPYLVVFL 135 (394)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHHc----CCCEEEEEE
Confidence 4455678999999998776655555567899999999642 0112223333333221 466 78999
Q ss_pred eCCCCc
Q 016253 296 NKFDIF 301 (392)
Q Consensus 296 NK~Dl~ 301 (392)
||+|+.
T Consensus 136 NK~D~~ 141 (394)
T PRK12736 136 NKVDLV 141 (394)
T ss_pred EecCCc
Confidence 999985
No 235
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=4e-05 Score=69.17 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=61.8
Q ss_pred cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCcccc
Q 016253 234 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVC 313 (392)
Q Consensus 234 ~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~ 313 (392)
+++.|..|++++++|++|+|+++.+.... .. +.. ...+.|+++++||+|+..+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~-------l~~-----~~~~~~~ilV~NK~Dl~~~~~-------- 78 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI-----PR-------LRL-----FGGNNPVILVGNKIDLLPKDK-------- 78 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc-----hh-------HHH-----hcCCCcEEEEEEchhcCCCCC--------
Confidence 68899999999999999999876432110 11 111 123579999999999863211
Q ss_pred ccccccccCCCCcccHHHHHHHHHH-HHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 314 EWFKDYQPVSTGKQEIENAYEFVKK-KFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 314 ~~f~~y~~~~~g~~~~~~~~~~i~~-~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
.......|... .+... .. ..-.++.+||+++.|++++++.+.+.+
T Consensus 79 --------------~~~~~~~~~~~~~~~~~----~~-----~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 79 --------------NLVRIKNWLRAKAAAGL----GL-----KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --------------CHHHHHHHHHHHHHhhc----CC-----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 11222233211 11110 00 011357899999999999999988754
No 236
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.94 E-value=6.4e-05 Score=81.77 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=47.9
Q ss_pred cccccceeEEecCCcccccc----------chhccc--cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC
Q 016253 217 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~----------~w~~yf--~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~ 284 (392)
..++.++++|||.|+.++.. .+..|+ +.++++|+|+|.++. +..+.++..+..
T Consensus 46 ~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l-------------er~l~l~~ql~e-- 110 (772)
T PRK09554 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL-------------ERNLYLTLQLLE-- 110 (772)
T ss_pred EcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc-------------hhhHHHHHHHHH--
Confidence 45567899999999987643 234454 479999999997532 222344444433
Q ss_pred CCCCceEEEEeeCCCCcc
Q 016253 285 CFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 285 ~~~~~~iiL~~NK~Dl~~ 302 (392)
.+.|+++++||+|+.+
T Consensus 111 --~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 111 --LGIPCIVALNMLDIAE 126 (772)
T ss_pred --cCCCEEEEEEchhhhh
Confidence 2589999999999864
No 237
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.94 E-value=2.2e-05 Score=68.83 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=68.5
Q ss_pred cccccceeEEecCCccc------cccchhccc--cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 217 KKSGEVYRLFDVGGQRN------ERRKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~------~r~~w~~yf--~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
...+..+.++|+.|--+ +.+.+..|. +..+++|+|+|.+ .++..+.+...+... +
T Consensus 43 ~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~-------------~l~r~l~l~~ql~e~----g 105 (156)
T PF02421_consen 43 KLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDAT-------------NLERNLYLTLQLLEL----G 105 (156)
T ss_dssp EETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGG-------------GHHHHHHHHHHHHHT----T
T ss_pred EecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCC-------------CHHHHHHHHHHHHHc----C
Confidence 44557899999999533 345566665 5899999999952 356667777777643 5
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCc-ccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
.|+++++||+|+.+++ |- .+.+. +.+.+ .+.+..+||.++
T Consensus 106 ~P~vvvlN~~D~a~~~--------------------g~~id~~~----Ls~~L---------------g~pvi~~sa~~~ 146 (156)
T PF02421_consen 106 IPVVVVLNKMDEAERK--------------------GIEIDAEK----LSERL---------------GVPVIPVSARTG 146 (156)
T ss_dssp SSEEEEEETHHHHHHT--------------------TEEE-HHH----HHHHH---------------TS-EEEEBTTTT
T ss_pred CCEEEEEeCHHHHHHc--------------------CCEECHHH----HHHHh---------------CCCEEEEEeCCC
Confidence 8999999999986542 21 12222 12211 155788999999
Q ss_pred hhHHHHHHHH
Q 016253 368 KLVKKTFKLV 377 (392)
Q Consensus 368 ~nI~~vF~~v 377 (392)
+++++++++|
T Consensus 147 ~g~~~L~~~I 156 (156)
T PF02421_consen 147 EGIDELKDAI 156 (156)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHhhC
Confidence 9999998765
No 238
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.92 E-value=7e-05 Score=69.74 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=46.1
Q ss_pred ccccceeEEecCCccccccchhcccc--ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~--~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
.++..+.+.|++|++.+.+-...... .++++++|+|... .. ......++..+.. .+.|+++++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~---------g~--~~~d~~~l~~l~~----~~ip~ivvv 145 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA---------GI--IGMTKEHLGLALA----LNIPVFVVV 145 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC---------CC--cHHHHHHHHHHHH----cCCCEEEEE
Confidence 34557899999999888665444443 5899999999632 11 1222333333332 257899999
Q ss_pred eCCCCccc
Q 016253 296 NKFDIFEK 303 (392)
Q Consensus 296 NK~Dl~~~ 303 (392)
||+|+.++
T Consensus 146 NK~D~~~~ 153 (224)
T cd04165 146 TKIDLAPA 153 (224)
T ss_pred ECccccCH
Confidence 99998643
No 239
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.91 E-value=6.3e-05 Score=83.58 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=47.1
Q ss_pred eeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCc
Q 016253 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 223 l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
+.+|||+|++.|.......+..++++++|+|.++- -.....+++..+.. .++|+++++||+|+.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G--------i~~qT~e~I~~lk~-------~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG--------FKPQTIEAINILRQ-------YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc--------CCHhHHHHHHHHHH-------cCCCEEEEEECCCCc
Confidence 89999999999998888888999999999997521 01111223332221 257999999999985
No 240
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00011 Score=74.95 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=80.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+++.+.+++.||.|+-.|+---.+-+.-|+|+|+|||-++ --+...+--|...+. .+..+|.|+|
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q-----------GvqAQT~anf~lAfe----~~L~iIpVlN 185 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ-----------GVQAQTVANFYLAFE----AGLAIIPVLN 185 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCc-----------CchHHHHHHHHHHHH----cCCeEEEeee
Confidence 3566899999999999888888888889999999999642 222233333333333 2578999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+ +.+++..-+.+.|... + . .+.+.||+.|.|+.+++++
T Consensus 186 KIDlp~a------------------------dpe~V~~q~~~lF~~~------~---~---~~i~vSAK~G~~v~~lL~A 229 (650)
T KOG0462|consen 186 KIDLPSA------------------------DPERVENQLFELFDIP------P---A---EVIYVSAKTGLNVEELLEA 229 (650)
T ss_pred ccCCCCC------------------------CHHHHHHHHHHHhcCC------c---c---ceEEEEeccCccHHHHHHH
Confidence 9999754 3445555555555421 1 1 3456899999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
|.+.|
T Consensus 230 II~rV 234 (650)
T KOG0462|consen 230 IIRRV 234 (650)
T ss_pred HHhhC
Confidence 98876
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.87 E-value=7.2e-05 Score=76.70 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=78.8
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEccc--ccccccchhhhhhHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE--YDQTLFEDEQKNRMMETKEL 276 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~--yd~~l~e~~~~nrl~es~~~ 276 (392)
|.-|+.+....| ..++..+.+.|+.|++.|.+........++++|+|+|.++ |..... ......+.+.+
T Consensus 69 rGiTi~~~~~~~------~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~---~~~qT~eh~~~ 139 (447)
T PLN00043 69 RGITIDIALWKF------ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS---KDGQTREHALL 139 (447)
T ss_pred cCceEEEEEEEe------cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC---CCchHHHHHHH
Confidence 455665666667 6677899999999999999999999999999999999753 110000 00122222221
Q ss_pred HHHHHcCCCCCCc-eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 016253 277 FDWVLKQPCFEKT-SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDR 355 (392)
Q Consensus 277 f~~i~~~~~~~~~-~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r 355 (392)
+.. .++ +++++.||+|+.... | .. ..+++..+-+...+.... - ...
T Consensus 140 ----~~~---~gi~~iIV~vNKmD~~~~~--------------~----~~-~~~~~i~~ei~~~l~~~g----~---~~~ 186 (447)
T PLN00043 140 ----AFT---LGVKQMICCCNKMDATTPK--------------Y----SK-ARYDEIVKEVSSYLKKVG----Y---NPD 186 (447)
T ss_pred ----HHH---cCCCcEEEEEEcccCCchh--------------h----hH-HHHHHHHHHHHHHHHHcC----C---Ccc
Confidence 111 135 589999999975210 1 01 223333333333333221 0 112
Q ss_pred ceeEEEEEeeCchhHH
Q 016253 356 VFKIYRTTALDPKLVK 371 (392)
Q Consensus 356 ~~~~~~TsA~d~~nI~ 371 (392)
.+.+..+||.+|+||.
T Consensus 187 ~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 187 KIPFVPISGFEGDNMI 202 (447)
T ss_pred cceEEEEecccccccc
Confidence 3667789999999985
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.87 E-value=0.00015 Score=73.18 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=44.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce-EEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~-iiL~~ 295 (392)
+.++..+.+|||+|++.|.+....-..+++++++|+|..+ . -...+.+.+..+... ++| +++++
T Consensus 71 ~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~--------g---~~~qt~e~l~~~~~~----gi~~iIvvv 135 (394)
T TIGR00485 71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD--------G---PMPQTREHILLARQV----GVPYIVVFL 135 (394)
T ss_pred cCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC--------C---CcHHHHHHHHHHHHc----CCCEEEEEE
Confidence 4456678999999998776544333456699999999742 0 112223333333221 355 55789
Q ss_pred eCCCCcc
Q 016253 296 NKFDIFE 302 (392)
Q Consensus 296 NK~Dl~~ 302 (392)
||+|+..
T Consensus 136 NK~Dl~~ 142 (394)
T TIGR00485 136 NKCDMVD 142 (394)
T ss_pred EecccCC
Confidence 9999864
No 243
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.87 E-value=4.5e-05 Score=76.06 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=69.3
Q ss_pred ccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCc
Q 016253 231 QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPL 310 (392)
Q Consensus 231 q~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l 310 (392)
++.++.+...|+++++.|++|+|+.+++..+. ..+...+ .+.|++|++||+|+..+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~------------~~l~~~~-----~~~piilV~NK~DLl~k~------ 106 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI------------PELKRFV-----GGNPVLLVGNKIDLLPKS------ 106 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCcc------------HHHHHHh-----CCCCEEEEEEchhhCCCC------
Confidence 56788888999999999999999976553221 1122222 257999999999996421
Q ss_pred cccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 311 NVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 311 ~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
...++..+|+.+.+.... -....++.+||+++.||+++|+.+.+.
T Consensus 107 ----------------~~~~~~~~~l~~~~k~~g---------~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 107 ----------------VNLSKIKEWMKKRAKELG---------LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ----------------CCHHHHHHHHHHHHHHcC---------CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 123456667665544321 001136789999999999999998653
No 244
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.85 E-value=2.5e-05 Score=81.60 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=59.1
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+......+ +.++..+.+|||+|+..+..-...+++.++++|+|+|.++- .. .....+|+
T Consensus 64 rgisi~~~~~~~------~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g---------v~--~~t~~l~~ 126 (527)
T TIGR00503 64 RGISITTSVMQF------PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG---------VE--TRTRKLME 126 (527)
T ss_pred cCCcEEEEEEEE------eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC---------CC--HHHHHHHH
Confidence 455555555667 77788999999999998887666688999999999997531 00 11223333
Q ss_pred HHHcCCCCCCceEEEEeeCCCCcc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
++.. .++|+++|+||+|+..
T Consensus 127 -~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 127 -VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred -HHHh---cCCCEEEEEECccccC
Confidence 3322 3689999999999864
No 245
>PRK12735 elongation factor Tu; Reviewed
Probab=97.71 E-value=0.00034 Score=70.72 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=44.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceE-EEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF-MLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~i-iL~~ 295 (392)
+.++..+.++||+|++.|.+-...-..+++++++|+|..+ .- .....+.+..+.. .++|. ++++
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~--------g~---~~qt~e~l~~~~~----~gi~~iivvv 135 (396)
T PRK12735 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD--------GP---MPQTREHILLARQ----VGVPYIVVFL 135 (396)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC--------CC---chhHHHHHHHHHH----cCCCeEEEEE
Confidence 4455678999999998765544444567899999999742 01 1122233332221 24674 5689
Q ss_pred eCCCCcc
Q 016253 296 NKFDIFE 302 (392)
Q Consensus 296 NK~Dl~~ 302 (392)
||+|+..
T Consensus 136 NK~Dl~~ 142 (396)
T PRK12735 136 NKCDMVD 142 (396)
T ss_pred EecCCcc
Confidence 9999863
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.70 E-value=5.3e-05 Score=72.29 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=53.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++..+.+|||+|+..+...|..+++.++++++|+|.++-.+ ......|+.+.. .++|+++|+|
T Consensus 60 ~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-----------~~~~~~~~~~~~----~~~p~iivvN 124 (268)
T cd04170 60 EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-----------VGTEKLWEFADE----AGIPRIIFIN 124 (268)
T ss_pred EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-----------HHHHHHHHHHHH----cCCCEEEEEE
Confidence 4556789999999999888889999999999999999763211 122333443322 2579999999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|+...
T Consensus 125 K~D~~~~ 131 (268)
T cd04170 125 KMDRERA 131 (268)
T ss_pred CCccCCC
Confidence 9998754
No 247
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.67 E-value=7.1e-05 Score=80.90 Aligned_cols=83 Identities=10% Similarity=0.026 Sum_probs=59.3
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+-.....+ ..++..+.+|||+|+..+...|..+++.++++|||+|.++=. . .....+|..
T Consensus 60 giti~~~~~~~------~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~--------~---~~~~~~~~~ 122 (689)
T TIGR00484 60 GITITSAATTV------FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV--------Q---PQSETVWRQ 122 (689)
T ss_pred CCCEecceEEE------EECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC--------C---hhHHHHHHH
Confidence 34444444555 566789999999999999889999999999999999975310 1 122334443
Q ss_pred HHcCCCCCCceEEEEeeCCCCccc
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
+.. .++|+++++||+|+...
T Consensus 123 ~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 123 ANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHH----cCCCEEEEEECCCCCCC
Confidence 322 25799999999999753
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.62 E-value=0.0002 Score=72.59 Aligned_cols=83 Identities=12% Similarity=0.104 Sum_probs=51.3
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+-.....| ..++.++.+|||+|++.|-+....-...++++|+|+|.++ .. .....+...+...
T Consensus 65 giTid~~~~~~------~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~-------G~-~~qt~~~~~~~~~ 130 (406)
T TIGR02034 65 GITIDVAYRYF------STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK-------GV-LEQTRRHSYIASL 130 (406)
T ss_pred CcCeEeeeEEE------ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC-------CC-ccccHHHHHHHHH
Confidence 44444445555 5556789999999998886555555678999999999642 10 0111111111111
Q ss_pred HHcCCCCCCceEEEEeeCCCCcc
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
....++++++||+|+..
T Consensus 131 ------~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 131 ------LGIRHVVLAVNKMDLVD 147 (406)
T ss_pred ------cCCCcEEEEEEeccccc
Confidence 11246899999999853
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.55 E-value=0.00074 Score=69.31 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=76.6
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEccc--ccccccchhhhhhHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE--YDQTLFEDEQKNRMMETKELF 277 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~--yd~~l~e~~~~nrl~es~~~f 277 (392)
..|+-+....| +.++..+.+.|+.|++.|-+-...-...++++|+|+|.++ |...+. ......+.+.+.
T Consensus 70 GiTid~~~~~~------~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~---~~~qT~eh~~~~ 140 (446)
T PTZ00141 70 GITIDIALWKF------ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGIS---KDGQTREHALLA 140 (446)
T ss_pred CEeEEeeeEEE------ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccC---CCccHHHHHHHH
Confidence 44444445556 6677889999999999998888777889999999999742 100000 001122222221
Q ss_pred HHHHcCCCCCCce-EEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 016253 278 DWVLKQPCFEKTS-FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV 356 (392)
Q Consensus 278 ~~i~~~~~~~~~~-iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~ 356 (392)
.. ..+| +|++.||+|.... +| ....+++..+-+...+.... - ....
T Consensus 141 ~~-------~gi~~iiv~vNKmD~~~~--------------~~-----~~~~~~~i~~~i~~~l~~~g----~---~~~~ 187 (446)
T PTZ00141 141 FT-------LGVKQMIVCINKMDDKTV--------------NY-----SQERYDEIKKEVSAYLKKVG----Y---NPEK 187 (446)
T ss_pred HH-------cCCCeEEEEEEccccccc--------------hh-----hHHHHHHHHHHHHHHHHhcC----C---Cccc
Confidence 11 1444 7899999995321 01 00223444444444443321 0 1124
Q ss_pred eeEEEEEeeCchhHHH
Q 016253 357 FKIYRTTALDPKLVKK 372 (392)
Q Consensus 357 ~~~~~TsA~d~~nI~~ 372 (392)
+.+..+||.+|+||..
T Consensus 188 ~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 188 VPFIPISGWQGDNMIE 203 (446)
T ss_pred ceEEEeecccCCCccc
Confidence 7778899999999853
No 250
>CHL00071 tufA elongation factor Tu
Probab=97.50 E-value=0.00066 Score=68.90 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=52.8
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+......| ..++..+.+.||+|++.+-+....-...++++++|+|..+ .-.....+.+..
T Consensus 60 g~T~~~~~~~~------~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~ 122 (409)
T CHL00071 60 GITINTAHVEY------ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILL 122 (409)
T ss_pred CEeEEccEEEE------ccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHH
Confidence 44444444555 4455678899999998776655555678999999999642 011223333333
Q ss_pred HHcCCCCCCce-EEEEeeCCCCcc
Q 016253 280 VLKQPCFEKTS-FMLFLNKFDIFE 302 (392)
Q Consensus 280 i~~~~~~~~~~-iiL~~NK~Dl~~ 302 (392)
+.. .++| ++++.||+|+..
T Consensus 123 ~~~----~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 123 AKQ----VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHH----cCCCEEEEEEEccCCCC
Confidence 322 1467 789999999854
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00058 Score=69.83 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=74.0
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
.-.+.+.||.|++.|..+...=..=++.+|+|+|.. |.-..+..|+++..+. .++|++++.||+|
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~d--------DGv~pQTiEAI~hak~-------a~vP~iVAiNKiD 118 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAAD--------DGVMPQTIEAINHAKA-------AGVPIVVAINKID 118 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEcc--------CCcchhHHHHHHHHHH-------CCCCEEEEEeccc
Confidence 457899999999999998887667789999999973 3334444455544333 3799999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
..+.. |.....-..++ | +..+. -.+.+.+..+||++|+||.+++..+.-
T Consensus 119 k~~~n----p~~v~~el~~~-----g---------l~~E~-------------~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 119 KPEAN----PDKVKQELQEY-----G---------LVPEE-------------WGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred CCCCC----HHHHHHHHHHc-----C---------CCHhh-------------cCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 87432 11100000000 1 00000 123356677999999999999887653
No 252
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.38 E-value=0.0012 Score=66.53 Aligned_cols=135 Identities=12% Similarity=0.111 Sum_probs=85.4
Q ss_pred cceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHH
Q 016253 194 DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET 273 (392)
Q Consensus 194 Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es 273 (392)
|+=|-|.-|+-...++...... +++.+.|++.||.|+-.|.---..-...|.|+++|||-| ...+ ..+
T Consensus 50 diERERGITIKaq~v~l~Yk~~-~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAs---------QGve--AQT 117 (603)
T COG0481 50 DIERERGITIKAQAVRLNYKAK-DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDAS---------QGVE--AQT 117 (603)
T ss_pred hhHhhcCceEEeeEEEEEEEeC-CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECc---------cchH--HHH
Confidence 4445566666655554432221 567899999999999887766666677899999999964 1111 112
Q ss_pred H-HHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCC
Q 016253 274 K-ELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDR 352 (392)
Q Consensus 274 ~-~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~ 352 (392)
+ ..|..+-+ +.-|+-++||+||+.+ +++++.+-|.+-+. + ++
T Consensus 118 lAN~YlAle~-----~LeIiPViNKIDLP~A------------------------dpervk~eIe~~iG-i-----d~-- 160 (603)
T COG0481 118 LANVYLALEN-----NLEIIPVLNKIDLPAA------------------------DPERVKQEIEDIIG-I-----DA-- 160 (603)
T ss_pred HHHHHHHHHc-----CcEEEEeeecccCCCC------------------------CHHHHHHHHHHHhC-C-----Cc--
Confidence 2 23333322 4678999999999764 23333333333221 0 10
Q ss_pred CCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 353 VDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 353 ~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
-....+||++|.+|.++++++.+.|
T Consensus 161 ----~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 161 ----SDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ----chheeEecccCCCHHHHHHHHHhhC
Confidence 1124689999999999999988765
No 253
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.35 E-value=0.001 Score=68.41 Aligned_cols=115 Identities=11% Similarity=0.116 Sum_probs=68.7
Q ss_pred ceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCc
Q 016253 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
.+.+.|+.|++.|-+-...-...++++++|+|..+- .......+.+...+. +.-.++++++||+|+.
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g-------~~~~qT~ehl~i~~~------lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES-------CPQPQTSEHLAAVEI------MKLKHIIILQNKIDLV 184 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-------ccchhhHHHHHHHHH------cCCCcEEEEEeccccc
Confidence 578999999988866555556789999999997521 001111122222211 1124789999999986
Q ss_pred cccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 302 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 302 ~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
.. ...++..+.+...+.... ...+.++.+||++++||+.+.+.+.+.+
T Consensus 185 ~~-----------------------~~~~~~~~ei~~~l~~~~---------~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 185 KE-----------------------AQAQDQYEEIRNFVKGTI---------ADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred CH-----------------------HHHHHHHHHHHHHHHhhc---------cCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 32 111222222322222211 1125567899999999998888877644
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.33 E-value=0.00066 Score=72.72 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=45.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++..+.++||+|++.+-+.-..-...++++++|+|..+- .. ....+...+...+ ...++++++|
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g-------~~-~~t~e~~~~~~~~------~~~~iivvvN 165 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG-------VL-TQTRRHSFIASLL------GIRHVVLAVN 165 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC-------cc-ccCHHHHHHHHHh------CCCeEEEEEE
Confidence 45566788999999987755555556789999999997421 00 1111112222111 2357999999
Q ss_pred CCCCcc
Q 016253 297 KFDIFE 302 (392)
Q Consensus 297 K~Dl~~ 302 (392)
|+|+.+
T Consensus 166 K~D~~~ 171 (632)
T PRK05506 166 KMDLVD 171 (632)
T ss_pred eccccc
Confidence 999853
No 255
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.33 E-value=0.00049 Score=59.86 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=56.6
Q ss_pred cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCcccc
Q 016253 234 ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVC 313 (392)
Q Consensus 234 ~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~ 313 (392)
.|.++.|..++++.+|+|+|.++... ..+ ..+.. .... .+.|+++++||+|+..+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~------~~~-----~~l~~-~~~~---~~~p~iiv~NK~Dl~~~~--------- 57 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPEL------TRS-----RKLER-YVLE---LGKKLLIVLNKADLVPKE--------- 57 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcc------cCC-----HHHHH-HHHh---CCCcEEEEEEhHHhCCHH---------
Confidence 36778899999999999999753211 011 11111 1111 257999999999984320
Q ss_pred ccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 314 EWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 314 ~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
... ++. .+... ....++.+||+++.+++.+++.+.+.+
T Consensus 58 --------------~~~---~~~--~~~~~-----------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 58 --------------VLE---KWK--SIKES-----------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred --------------HHH---HHH--HHHHh-----------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 011 111 11110 012356789999999999998887665
No 256
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.33 E-value=0.00052 Score=65.97 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=51.4
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCC--------------------------ccccccchhccccc--cCEEEEE
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGG--------------------------QRNERRKWIHLFEG--VSAVIFC 251 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgG--------------------------q~~~r~~w~~yf~~--~~~iifv 251 (392)
.+|+++......+.. ++..+++.+|||+| ++..+..+..++.+ +++++|+
T Consensus 44 ~~T~~i~~~~~~i~~--~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 44 DKTVEIKSSKAEIEE--NGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred CCceEEEEEEEEEEE--CCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 445555443332211 34457899999999 33344444456664 6788888
Q ss_pred EEcccccccccchhhhhhHHHH-HHHHHHHHcCCCCCCceEEEEeeCCCCcc
Q 016253 252 AAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 252 ~dls~yd~~l~e~~~~nrl~es-~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
++-+. ..+... ++.++.+.. .+|+++++||+|++.
T Consensus 122 i~~~~-----------~~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~ 157 (276)
T cd01850 122 IEPTG-----------HGLKPLDIEFMKRLSK-----RVNIIPVIAKADTLT 157 (276)
T ss_pred EeCCC-----------CCCCHHHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence 87431 122122 555666643 489999999999965
No 257
>PRK00049 elongation factor Tu; Reviewed
Probab=97.31 E-value=0.0032 Score=63.65 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=50.5
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+......+ ..++..+.+.||.|++.+-+-...-...++++++|+|..+ .- .....+.+..
T Consensus 60 g~Ti~~~~~~~------~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~--------g~---~~qt~~~~~~ 122 (396)
T PRK00049 60 GITINTAHVEY------ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD--------GP---MPQTREHILL 122 (396)
T ss_pred CeEEeeeEEEE------cCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC--------CC---chHHHHHHHH
Confidence 44444444555 4455678899999998765544455678999999999642 11 1222333333
Q ss_pred HHcCCCCCCceEE-EEeeCCCCc
Q 016253 280 VLKQPCFEKTSFM-LFLNKFDIF 301 (392)
Q Consensus 280 i~~~~~~~~~~ii-L~~NK~Dl~ 301 (392)
+.. .++|++ ++.||+|+.
T Consensus 123 ~~~----~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 123 ARQ----VGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHH----cCCCEEEEEEeecCCc
Confidence 322 146765 689999985
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.27 E-value=0.0038 Score=61.21 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=29.8
Q ss_pred cccceeEEecCCc----cccccchh---ccccccCEEEEEEEccc
Q 016253 219 SGEVYRLFDVGGQ----RNERRKWI---HLFEGVSAVIFCAAISE 256 (392)
Q Consensus 219 ~~~~l~i~DvgGq----~~~r~~w~---~yf~~~~~iifv~dls~ 256 (392)
..+.+++|||+|+ +.++.+-. .++++++++++|+|+++
T Consensus 67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4578999999998 44554433 35899999999999974
No 259
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.25 E-value=0.00068 Score=48.81 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=31.1
Q ss_pred cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 245 VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 245 ~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
.++|+|++|+|+ ..--.+++-+.+|+++-. .|.+.|+++++||+|
T Consensus 14 ~~~ilfi~D~Se--------~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSE--------QCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT---------TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCC--------CCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 478999999985 233467788899999964 588999999999998
No 260
>PLN03127 Elongation factor Tu; Provisional
Probab=97.23 E-value=0.0042 Score=63.76 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=51.6
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+......| +.++..+.+.||.|++.+-+.-..-...+|++++|+|..+ .- .....+.+.
T Consensus 108 rGiTi~~~~~~~------~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~--------g~---~~qt~e~l~ 170 (447)
T PLN03127 108 RGITIATAHVEY------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD--------GP---MPQTKEHIL 170 (447)
T ss_pred cCceeeeeEEEE------cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC--------CC---chhHHHHHH
Confidence 345555555666 5556688999999998764444333456999999999632 10 112223333
Q ss_pred HHHcCCCCCCce-EEEEeeCCCCcc
Q 016253 279 WVLKQPCFEKTS-FMLFLNKFDIFE 302 (392)
Q Consensus 279 ~i~~~~~~~~~~-iiL~~NK~Dl~~ 302 (392)
.+.. .++| ++++.||+|+.+
T Consensus 171 ~~~~----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 171 LARQ----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHH----cCCCeEEEEEEeeccCC
Confidence 3322 2467 578999999853
No 261
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0017 Score=68.49 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=82.0
Q ss_pred ceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCc
Q 016253 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
-+.++||.|+++|..+....-..|+.+|.|+|+-. .-.....+|+.+++. .++|+|+.+||+|.+
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImh--------GlepqtiESi~lLR~-------rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMH--------GLEPQTIESINLLRM-------RKTPFIVALNKIDRL 605 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhc--------cCCcchhHHHHHHHh-------cCCCeEEeehhhhhh
Confidence 37899999999999999888889999999999831 111233466666543 479999999999975
Q ss_pred cc--cccccCccccccccccccCCCCc--ccHHHHHHHHHHHHHH------HhhccCCCCCCCcceeEEEEEeeCchhHH
Q 016253 302 EK--KVLKVPLNVCEWFKDYQPVSTGK--QEIENAYEFVKKKFEE------LYFQSTAPDRVDRVFKIYRTTALDPKLVK 371 (392)
Q Consensus 302 ~~--kl~~~~l~~~~~f~~y~~~~~g~--~~~~~~~~~i~~~f~~------~~~~~~~~~~~~r~~~~~~TsA~d~~nI~ 371 (392)
-. ..+..|+.. -+.+- +.. +.+..-++-|...|.+ +|-.|.. ..+.+...-|||..|++|-
T Consensus 606 Ygwk~~p~~~i~~--~lkkQ----~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~---~~~~vsiVPTSA~sGeGip 676 (1064)
T KOG1144|consen 606 YGWKSCPNAPIVE--ALKKQ----KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKE---MGETVSIVPTSAISGEGIP 676 (1064)
T ss_pred cccccCCCchHHH--HHHHh----hHHHHHHHHHHHHHHHHHHHHcccchhheeeccc---ccceEEeeecccccCCCcH
Confidence 32 000111100 00000 010 1222223333344432 2222222 2345666779999999999
Q ss_pred HHHHHHHHHHH
Q 016253 372 KTFKLVDETLR 382 (392)
Q Consensus 372 ~vF~~v~~~Il 382 (392)
.++-.+...--
T Consensus 677 dLl~llv~ltQ 687 (1064)
T KOG1144|consen 677 DLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHH
Confidence 88877665543
No 262
>PRK12739 elongation factor G; Reviewed
Probab=97.19 E-value=0.00048 Score=74.54 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=60.5
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|.-|+-.....+ ..++..+.++||+|+..+..-|....+.++++|+|+|.++ .. .......|.
T Consensus 57 rgiti~~~~~~~------~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~---------g~--~~qt~~i~~ 119 (691)
T PRK12739 57 RGITITSAATTC------FWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVS---------GV--EPQSETVWR 119 (691)
T ss_pred cCCCccceeEEE------EECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCC---------CC--CHHHHHHHH
Confidence 344554555556 5677889999999999888889999999999999999642 11 112234444
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
.+.. .+.|++++.||+|+..+
T Consensus 120 ~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 120 QADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHH----cCCCEEEEEECCCCCCC
Confidence 4432 25799999999999854
No 263
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.15 E-value=0.00047 Score=74.91 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=52.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+++.+.+|||+|+..+.......++.++++|+|+|..+- . ..+....+....+ .+.|+++|+|
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g---------~--~~~t~~~~~~~~~----~~~p~ivviN 146 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG---------V--MPQTETVLRQALK----ENVKPVLFIN 146 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC---------C--CccHHHHHHHHHH----cCCCEEEEEE
Confidence 55678899999999999888888899999999999996421 0 1122333444332 2467889999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|....
T Consensus 147 KiD~~~~ 153 (720)
T TIGR00490 147 KVDRLIN 153 (720)
T ss_pred Chhcccc
Confidence 9998754
No 264
>PRK08118 topology modulation protein; Reviewed
Probab=97.13 E-value=0.00042 Score=61.49 Aligned_cols=20 Identities=50% Similarity=0.890 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
||+|+|++||||||++|++-
T Consensus 3 rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999994
No 265
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.10 E-value=0.0012 Score=66.90 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=81.3
Q ss_pred cccccceeEEecCCcc---ccccchhcccc------ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 217 KKSGEVYRLFDVGGQR---NERRKWIHLFE------GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~---~~r~~w~~yf~------~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
+.+-..|++.||+|-- -+.+-.+..-. =-.+|+|+.|||+ ..--++.+-.++|++| .|.|.
T Consensus 211 dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe--------~CGySva~QvkLfhsI--KpLFa 280 (620)
T KOG1490|consen 211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE--------MCGYSVAAQVKLYHSI--KPLFA 280 (620)
T ss_pred hhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh--------hhCCCHHHHHHHHHHh--HHHhc
Confidence 4455678999998852 12222211111 1258999999984 3445677889999999 47899
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
+.|.|+++||+|+..- .++++.-+-+.+...+ ...+.+..||..+.
T Consensus 281 NK~~IlvlNK~D~m~~-----------------------edL~~~~~~ll~~~~~-----------~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 281 NKVTILVLNKIDAMRP-----------------------EDLDQKNQELLQTIID-----------DGNVKVVQTSCVQE 326 (620)
T ss_pred CCceEEEeecccccCc-----------------------cccCHHHHHHHHHHHh-----------ccCceEEEecccch
Confidence 9999999999998531 2222222222222221 12266788999999
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 016253 368 KLVKKTFKLVDETLRRRH 385 (392)
Q Consensus 368 ~nI~~vF~~v~~~Il~~~ 385 (392)
++|-.|=....+.+|..-
T Consensus 327 egVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 327 EGVMDVRTTACEALLAAR 344 (620)
T ss_pred hceeeHHHHHHHHHHHHH
Confidence 999888888888777543
No 266
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.06 E-value=0.0061 Score=55.33 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=66.0
Q ss_pred ceeEEecCCccccccchhcc-----ccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 222 VYRLFDVGGQRNERRKWIHL-----FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~w~~y-----f~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
.+.+||+.|.......-..| +.+++.+++|.+- ++.+.- .+++.+... +.|+++|+
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~--------------~~~~~d~~~~~~l~~~----~~~~ilV~ 114 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST--------------RFSSNDVKLAKAIQCM----GKKFYFVR 114 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC--------------CCCHHHHHHHHHHHHh----CCCEEEEE
Confidence 57899999985432222233 6778888887541 111222 223333221 47999999
Q ss_pred eCCCCccc--cccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC--chhHH
Q 016253 296 NKFDIFEK--KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD--PKLVK 371 (392)
Q Consensus 296 NK~Dl~~~--kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d--~~nI~ 371 (392)
||+|+... +... + .+ ...++..+.+.+...+.++.... ..-.+|.+||-+ +-++.
T Consensus 115 nK~D~~~~~~~~~~-~--------------~~-~~~~~~l~~i~~~~~~~~~~~~~-----~~p~v~~vS~~~~~~~~~~ 173 (197)
T cd04104 115 TKVDRDLSNEQRSK-P--------------RS-FNREQVLQEIRDNCLENLQEAGV-----SEPPVFLVSNFDPSDYDFP 173 (197)
T ss_pred ecccchhhhhhccc-c--------------cc-ccHHHHHHHHHHHHHHHHHHcCC-----CCCCEEEEeCCChhhcChH
Confidence 99998431 1100 0 01 23445556666665554421111 112457799984 56776
Q ss_pred HHHHHHHHHHH
Q 016253 372 KTFKLVDETLR 382 (392)
Q Consensus 372 ~vF~~v~~~Il 382 (392)
.+.+.+...+-
T Consensus 174 ~l~~~~~~~l~ 184 (197)
T cd04104 174 KLRETLLKDLP 184 (197)
T ss_pred HHHHHHHHHhh
Confidence 66666665553
No 267
>PRK12289 GTPase RsgA; Reviewed
Probab=97.04 E-value=0.0021 Score=63.82 Aligned_cols=92 Identities=8% Similarity=0.044 Sum_probs=55.7
Q ss_pred chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccc
Q 016253 237 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWF 316 (392)
Q Consensus 237 ~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f 316 (392)
+....+.+++.|++|+|+.+-+ .+...+...+. .+ . ..++|++|++||+||..+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~------~~~~~LdR~L~---~a-~---~~~ip~ILVlNK~DLv~~------------- 135 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPP------LDPWQLSRFLV---KA-E---STGLEIVLCLNKADLVSP------------- 135 (352)
T ss_pred eechhhhcCCEEEEEEECCCCC------CCHHHHHHHHH---HH-H---HCCCCEEEEEEchhcCCh-------------
Confidence 3345689999999999985311 11122232222 11 1 246899999999998532
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 317 KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 317 ~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
++...| .+.|... .+.++++||+++.+|+.+++.+.+.
T Consensus 136 -------------~~~~~~-~~~~~~~------------g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 136 -------------TEQQQW-QDRLQQW------------GYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred -------------HHHHHH-HHHHHhc------------CCeEEEEEcCCCCCHHHHhhhhccc
Confidence 011122 2222221 1446789999999999999887653
No 268
>PRK00098 GTPase RsgA; Reviewed
Probab=97.01 E-value=0.0028 Score=61.59 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=51.6
Q ss_pred ccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCcccccccccccc
Q 016253 242 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQP 321 (392)
Q Consensus 242 f~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~ 321 (392)
..+++.+++|+|+++- +.+.+.+...+.. +.. .++|+++++||+|+...+
T Consensus 78 aaniD~vllV~d~~~p------~~~~~~idr~L~~----~~~---~~ip~iIVlNK~DL~~~~----------------- 127 (298)
T PRK00098 78 AANVDQAVLVFAAKEP------DFSTDLLDRFLVL----AEA---NGIKPIIVLNKIDLLDDL----------------- 127 (298)
T ss_pred eecCCEEEEEEECCCC------CCCHHHHHHHHHH----HHH---CCCCEEEEEEhHHcCCCH-----------------
Confidence 4899999999998531 1112223333222 222 368999999999985221
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 322 VSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 322 ~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
....+..+ .+.. ..+.++.+||+++.+++.+++.+..
T Consensus 128 -----~~~~~~~~----~~~~------------~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 128 -----EEARELLA----LYRA------------IGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred -----HHHHHHHH----HHHH------------CCCeEEEEeCCCCccHHHHHhhccC
Confidence 00111111 1211 1245678999999999999887643
No 269
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.99 E-value=0.0011 Score=61.00 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=51.8
Q ss_pred cccceeEEecCCcccc-----ccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEE
Q 016253 219 SGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 293 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~-----r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL 293 (392)
+++.+.+||.|||+.+ +..-.+-|++++++|||+|++. ++-...++.-..-++.++.+. +.+.+..
T Consensus 51 Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves-------~e~~~D~~~yqk~Le~ll~~S--P~AkiF~ 121 (295)
T KOG3886|consen 51 GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES-------REMEKDFHYYQKCLEALLQNS--PEAKIFC 121 (295)
T ss_pred hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-------hhhhhhHHHHHHHHHHHHhcC--CcceEEE
Confidence 3568999999999854 3344567999999999999742 111122333334455566553 3577899
Q ss_pred EeeCCCCccc
Q 016253 294 FLNKFDIFEK 303 (392)
Q Consensus 294 ~~NK~Dl~~~ 303 (392)
+..|+|+..+
T Consensus 122 l~hKmDLv~~ 131 (295)
T KOG3886|consen 122 LLHKMDLVQE 131 (295)
T ss_pred EEeechhccc
Confidence 9999999754
No 270
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.97 E-value=0.0049 Score=62.32 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=53.8
Q ss_pred eeeeEEEeeccCCCccccccceeEEecCCccccccch--------hccccccCEEEEEEEcccccccccchhhhhhHHHH
Q 016253 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET 273 (392)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w--------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es 273 (392)
|--+.+..+ +.+++.+++.||+|-|.-.... ..-.+.++.|+||+|.+.... .+-
T Consensus 252 TRDviee~i------~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-----------~~d 314 (454)
T COG0486 252 TRDVIEEDI------NLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-----------KED 314 (454)
T ss_pred ccceEEEEE------EECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-----------hhh
Confidence 344567777 7889999999999997532211 223678999999999764200 112
Q ss_pred HHHHHHHHcCCCCCCceEEEEeeCCCCccc
Q 016253 274 KELFDWVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 274 ~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
...++ ....+.|++++.||.||..+
T Consensus 315 ~~~~~-----~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 315 LALIE-----LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHHH-----hcccCCCEEEEEechhcccc
Confidence 22333 12346899999999999764
No 271
>PRK07261 topology modulation protein; Provisional
Probab=96.94 E-value=0.00052 Score=61.11 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
||+|+|++||||||+++++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998533
No 272
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.84 E-value=0.013 Score=56.82 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=52.6
Q ss_pred cccccceeEEecCCcc----ccccc----hhccccc-cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 217 KKSGEVYRLFDVGGQR----NERRK----WIHLFEG-VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~----~~r~~----w~~yf~~-~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
+.+...+|+.||.|-- .+|.- -..-.+. .++|+|++|.|+ ..--.+++-..+|+++-. .|.
T Consensus 211 e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se--------~cgy~lE~Q~~L~~eIk~--~f~ 280 (346)
T COG1084 211 ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSE--------TCGYSLEEQISLLEEIKE--LFK 280 (346)
T ss_pred ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc--------ccCCCHHHHHHHHHHHHH--hcC
Confidence 5677799999999962 12211 1112222 467999999974 344567778889999965 355
Q ss_pred CceEEEEeeCCCCcc
Q 016253 288 KTSFMLFLNKFDIFE 302 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~ 302 (392)
.|+++|+||.|+..
T Consensus 281 -~p~v~V~nK~D~~~ 294 (346)
T COG1084 281 -APIVVVINKIDIAD 294 (346)
T ss_pred -CCeEEEEecccccc
Confidence 89999999999863
No 273
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.83 E-value=0.0046 Score=53.88 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=29.1
Q ss_pred ccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcc
Q 016253 242 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 242 f~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
.+++|.|++|+|.++... ..... +...+.. ...+.|+++++||+|+..
T Consensus 6 l~~aD~il~VvD~~~p~~-----~~~~~-------i~~~l~~-~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 6 IDSSDVVIQVLDARDPMG-----TRCKH-------VEEYLKK-EKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhhCCEEEEEEECCCCcc-----ccCHH-------HHHHHHh-ccCCCCEEEEEEchhcCC
Confidence 578999999999864211 00111 1122221 123579999999999953
No 274
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.77 E-value=0.0029 Score=65.28 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=74.3
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHH-HHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM-ETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~-es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+...+.|++..+..+-.-.+=.+.+++|..|+++++ ..+.+++. .|+-+++..... ..++||||+|||.
T Consensus 55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~-------~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~ 125 (625)
T KOG1707|consen 55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD-------ESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKS 125 (625)
T ss_pred cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCC-------hHHhhhhhhhhhhhhhcccCC--CccCCEEEEeecc
Confidence 3456788887554444444667889999999998742 12333322 234444444332 2579999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+..... +..+.-..=|-..|.++ . .++.+||+.-.|+.++|....
T Consensus 126 d~~~~~~---------------------~s~e~~~~pim~~f~Ei----------E---tciecSA~~~~n~~e~fYyaq 171 (625)
T KOG1707|consen 126 DNGDNEN---------------------NSDEVNTLPIMIAFAEI----------E---TCIECSALTLANVSELFYYAQ 171 (625)
T ss_pred CCccccc---------------------cchhHHHHHHHHHhHHH----------H---HHHhhhhhhhhhhHhhhhhhh
Confidence 9854311 11222233344455543 1 135689999999999999888
Q ss_pred HHHH
Q 016253 379 ETLR 382 (392)
Q Consensus 379 ~~Il 382 (392)
+.|+
T Consensus 172 KaVi 175 (625)
T KOG1707|consen 172 KAVI 175 (625)
T ss_pred heee
Confidence 8775
No 275
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.00099 Score=59.82 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
||+|+|++||||||+++++--.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998433
No 276
>PRK12288 GTPase RsgA; Reviewed
Probab=96.68 E-value=0.011 Score=58.63 Aligned_cols=87 Identities=8% Similarity=0.104 Sum_probs=52.5
Q ss_pred cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccC
Q 016253 243 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPV 322 (392)
Q Consensus 243 ~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~ 322 (392)
.|++.+++|+++. .+.+...++..+... . ..++|++|++||+||..+.
T Consensus 119 ANvD~vlIV~s~~-------p~~s~~~Ldr~L~~a----~---~~~i~~VIVlNK~DL~~~~------------------ 166 (347)
T PRK12288 119 ANIDQIVIVSAVL-------PELSLNIIDRYLVAC----E---TLGIEPLIVLNKIDLLDDE------------------ 166 (347)
T ss_pred EEccEEEEEEeCC-------CCCCHHHHHHHHHHH----H---hcCCCEEEEEECccCCCcH------------------
Confidence 4689999999864 122334444443322 2 2358999999999996421
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 323 STGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 323 ~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
..+...+++. .|.. ..+.++.+||+++++++.+++.+..
T Consensus 167 -----~~~~~~~~~~-~y~~------------~g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 167 -----GRAFVNEQLD-IYRN------------IGYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred -----HHHHHHHHHH-HHHh------------CCCeEEEEeCCCCcCHHHHHHHHhh
Confidence 0011111111 1221 1245678999999999999988865
No 277
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.59 E-value=0.0014 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|.|++||||||+++++.-.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999985443
No 278
>PRK13796 GTPase YqeH; Provisional
Probab=96.58 E-value=0.013 Score=58.61 Aligned_cols=87 Identities=13% Similarity=0.187 Sum_probs=53.5
Q ss_pred CEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCC
Q 016253 246 SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTG 325 (392)
Q Consensus 246 ~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g 325 (392)
..|++|+|+.++...+ ...+..... +.|++|++||+|+....
T Consensus 71 ~lIv~VVD~~D~~~s~------------~~~L~~~~~-----~kpviLViNK~DLl~~~--------------------- 112 (365)
T PRK13796 71 ALVVNVVDIFDFNGSW------------IPGLHRFVG-----NNPVLLVGNKADLLPKS--------------------- 112 (365)
T ss_pred cEEEEEEECccCCCch------------hHHHHHHhC-----CCCEEEEEEchhhCCCc---------------------
Confidence 4789999987654321 122233322 56899999999996421
Q ss_pred cccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 326 KQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 326 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
...++..+|+...+.... -+...++.+||+++.+|+++++.+.+.
T Consensus 113 -~~~~~i~~~l~~~~k~~g---------~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 113 -VKKNKVKNWLRQEAKELG---------LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -cCHHHHHHHHHHHHHhcC---------CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 122344556554433210 011236789999999999999998654
No 279
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.024 Score=58.36 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=71.0
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
++-.+.+.||.|+.-|..+...=-..+|.|++||+. +|.-.....|+++.- ...++|+++..||+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAa--------dDGVmpQT~EaIkhA-------k~A~VpiVvAinKi 263 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAA--------DDGVMPQTLEAIKHA-------KSANVPIVVAINKI 263 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEc--------cCCccHhHHHHHHHH-------HhcCCCEEEEEecc
Confidence 446789999999999988887655667889999985 333333333443322 22479999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|-.++.. +.+.+-+...-..+- .-. -.+.+...||+.|+|+..+-+++.
T Consensus 264 Dkp~a~p------------------------ekv~~eL~~~gi~~E--~~G-----GdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 264 DKPGANP------------------------EKVKRELLSQGIVVE--DLG-----GDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred CCCCCCH------------------------HHHHHHHHHcCccHH--HcC-----CceeEEEeecccCCChHHHHHHHH
Confidence 9765532 222221111100000 000 125667899999999988777654
No 280
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.47 E-value=0.0073 Score=56.78 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=65.9
Q ss_pred ceeEEecCCccccccchhccc--------cccCEEEEEEEcccccccccchhhhhhH-HHHHHHHHHHHcCCCCCCceEE
Q 016253 222 VYRLFDVGGQRNERRKWIHLF--------EGVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCFEKTSFM 292 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~w~~yf--------~~~~~iifv~dls~yd~~l~e~~~~nrl-~es~~~f~~i~~~~~~~~~~ii 292 (392)
.+.++||.||-..-..|.... ...-+++|++|.+-.. +...+ ...+.-+...++ .+.|.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~-------~~~~f~s~~L~s~s~~~~----~~lP~v 160 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCS-------DPSKFVSSLLLSLSIMLR----LELPHV 160 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-S-------SHHHHHHHHHHHHHHHHH----HTSEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEeccccc-------ChhhHHHHHHHHHHHHhh----CCCCEE
Confidence 678999999987766665544 4567899999964221 11222 222222233333 268999
Q ss_pred EEeeCCCCccccccccCccccccccccccCCCCcccHHHH----HHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 293 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA----YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 293 L~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~----~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.++||+|+.++.... .-+|+.+. ...... .+.+.....++... -.....++..|+.+++
T Consensus 161 nvlsK~Dl~~~~~~~----~l~~~~d~-------~~l~~~~~~~~~~l~~~i~~~l~~------~~~~~~f~pls~~~~~ 223 (238)
T PF03029_consen 161 NVLSKIDLLSKYLEF----ILEWFEDP-------DSLEDLLESDYKKLNEEIAELLDD------FGLVIRFIPLSSKDGE 223 (238)
T ss_dssp EEE--GGGS-HHHHH----HHHHHHSH-------HHHHHHHHT-HHHHHHHHHHHCCC------CSSS---EE-BTTTTT
T ss_pred EeeeccCcccchhHH----HHHHhcCh-------HHHHHHHHHHHHHHHHHHHHHHhh------cCCCceEEEEECCChH
Confidence 999999998743111 12344444 222222 23333333333211 0111256778999999
Q ss_pred hHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETL 381 (392)
Q Consensus 369 nI~~vF~~v~~~I 381 (392)
++..++..|.+.+
T Consensus 224 ~~~~L~~~id~a~ 236 (238)
T PF03029_consen 224 GMEELLAAIDKAN 236 (238)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876653
No 281
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.42 E-value=0.0027 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.++|.|++|||||||+|++-.+-
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 68999999999999999996554
No 282
>COG1159 Era GTPase [General function prediction only]
Probab=96.24 E-value=0.031 Score=53.62 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=42.9
Q ss_pred ccceeEEecCCccccccchh--------ccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceE
Q 016253 220 GEVYRLFDVGGQRNERRKWI--------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 291 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~--------~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~i 291 (392)
+..+-+.||.|-..-+..-- .-+.+|+.|+||+|..+ ....-+ ...++.+.+ .++|+
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~---------~~~~~d--~~il~~lk~----~~~pv 117 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE---------GWGPGD--EFILEQLKK----TKTPV 117 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc---------cCCccH--HHHHHHHhh----cCCCe
Confidence 45778999999644444332 23568999999999742 111111 112222221 35899
Q ss_pred EEEeeCCCCccc
Q 016253 292 MLFLNKFDIFEK 303 (392)
Q Consensus 292 iL~~NK~Dl~~~ 303 (392)
+|++||.|....
T Consensus 118 il~iNKID~~~~ 129 (298)
T COG1159 118 ILVVNKIDKVKP 129 (298)
T ss_pred EEEEEccccCCc
Confidence 999999998654
No 283
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.21 E-value=0.015 Score=59.80 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=91.0
Q ss_pred hhhhhcCCCCCCcccceeccceeeee--EEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccc
Q 016253 180 LQRLSDANYVPTKDDVLYARVRTTGV--VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY 257 (392)
Q Consensus 180 ~~ri~~~~y~PT~~Dil~~r~~T~Gi--~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~y 257 (392)
+.|+....|.|.+ .|--|- .|+.. +++...+.+.|.||.. -..|-.-++++|||+.+
T Consensus 47 vhr~ltgty~~~e-------~~e~~~~kkE~vv------~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~--- 105 (749)
T KOG0705|consen 47 VHRYLTGTYTQDE-------SPEGGRFKKEVVV------DGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSV--- 105 (749)
T ss_pred eeeeccceecccc-------CCcCccceeeEEe------eccceEeeeecccCCc-----hhhhhhhccceEEEEEe---
Confidence 5677888888866 444332 23333 6778889999999932 24456678999999997
Q ss_pred cccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHH
Q 016253 258 DQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 337 (392)
Q Consensus 258 d~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~ 337 (392)
.+.+.+.....++..+.....-..+|+++++.+ |.-..+...+ .+..++.+...
T Consensus 106 -------~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~~rv------------------~~da~~r~l~~ 159 (749)
T KOG0705|consen 106 -------EDEQSFQAVQALAHEMSSYRNISDLPLILVGTQ-DHISAKRPRV------------------ITDDRARQLSA 159 (749)
T ss_pred -------ccccCHHHHHHHHhhcccccccccchHHhhcCc-chhhcccccc------------------cchHHHHHHHH
Confidence 455555555555555555444556788888774 4433322111 11223333222
Q ss_pred HHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHh
Q 016253 338 KKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 338 ~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
+ -+.+.+|+|||+.|.|+..+|..+...++..
T Consensus 160 ~---------------~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 160 Q---------------MKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred h---------------cCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 1 1236678999999999999999988877644
No 284
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.17 E-value=0.017 Score=55.87 Aligned_cols=89 Identities=7% Similarity=-0.007 Sum_probs=52.8
Q ss_pred hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccc
Q 016253 239 IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKD 318 (392)
Q Consensus 239 ~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~ 318 (392)
.....+++.+++|+|+.+-. .+.+.++..+..+. . .++|+++++||+||..+.
T Consensus 73 ~~i~anvD~vllV~d~~~p~------~s~~~ldr~L~~~~---~----~~ip~iIVlNK~DL~~~~-------------- 125 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPF------FNPRLLDRYLVAAE---A----AGIEPVIVLTKADLLDDE-------------- 125 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCC------CCHHHHHHHHHHHH---H----cCCCEEEEEEHHHCCChH--------------
Confidence 34578999999999984210 02233333332222 1 368999999999985320
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 319 YQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 319 y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+...+ ...+.. ..+.++.+||+++.+++.++..+..
T Consensus 126 ------------~~~~~-~~~~~~------------~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 126 ------------EEELE-LVEALA------------LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ------------HHHHH-HHHHHh------------CCCeEEEEECCCCccHHHHHhhhcc
Confidence 00011 111111 1145678999999999998887764
No 285
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.17 E-value=0.029 Score=50.71 Aligned_cols=126 Identities=16% Similarity=0.235 Sum_probs=69.2
Q ss_pred cccceeEEecCCccccc-----------cchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 219 SGEVYRLFDVGGQRNER-----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r-----------~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
.+..+.++||.|-.... +.+..+..+++++|||+++..+. ..-...++.+.+++.....
T Consensus 47 ~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t---------~~d~~~l~~l~~~fg~~~~- 116 (196)
T cd01852 47 DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFT---------EEEEQAVETLQELFGEKVL- 116 (196)
T ss_pred CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcC---------HHHHHHHHHHHHHhChHhH-
Confidence 45578999999954321 11223457899999999975421 1223455666666543222
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEE--Eee
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRT--TAL 365 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~T--sA~ 365 (392)
.++++++|+.|-+... . +.+|. .+.-.++......+ ..|.+.+... ++.
T Consensus 117 -~~~ivv~T~~d~l~~~----~------~~~~~---------~~~~~~l~~l~~~c---------~~r~~~f~~~~~~~~ 167 (196)
T cd01852 117 -DHTIVLFTRGDDLEGG----T------LEDYL---------ENSCEALKRLLEKC---------GGRYVAFNNKAKGEE 167 (196)
T ss_pred -hcEEEEEECccccCCC----c------HHHHH---------HhccHHHHHHHHHh---------CCeEEEEeCCCCcch
Confidence 3678888888865431 1 11121 11112222222221 1222222222 378
Q ss_pred CchhHHHHHHHHHHHHHH
Q 016253 366 DPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 366 d~~nI~~vF~~v~~~Il~ 383 (392)
++.+++++++.|.+.+-.
T Consensus 168 ~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 168 QEQQVKELLAKVESMVKE 185 (196)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 899999999998888754
No 286
>PRK06217 hypothetical protein; Validated
Probab=96.13 E-value=0.0032 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
||+|+|.+||||||+.+++.-.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999985443
No 287
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.10 E-value=0.0034 Score=55.90 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=21.9
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
++.+||+++|..+|||||++++++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~ 35 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK 35 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEEECCCccchHHHHHHhh
Confidence 567899999999999999999975
No 288
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.07 E-value=0.006 Score=44.86 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.0
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
.+|.|++|||||||+..+..+.
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998755
No 289
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.07 E-value=0.079 Score=51.32 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=65.2
Q ss_pred eeEEecCCcc----ccccchhc---cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 223 YRLFDVGGQR----NERRKWIH---LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 223 l~i~DvgGq~----~~r~~w~~---yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+.+=|+.|-= .-|-+-.. ..+-++.++||+|+|.+-.. ...+...-|.+-++.|++- +.+.|.++|+
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~-~p~~~~~lL~~ELe~yek~-----L~~rp~liVa 319 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLR-NPWQQLQLLIEELELYEKG-----LADRPALIVA 319 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccC-CHHHHHHHHHHHHHHHhhh-----hccCceEEEE
Confidence 8888988852 12223333 34568999999999865220 0011122233333444443 4568999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+.++. .+++......+ +. -.++..||+.++++..+.+
T Consensus 320 NKiD~~eae----------------------------~~~l~~L~~~l----q~-------~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 320 NKIDLPEAE----------------------------KNLLSSLAKRL----QN-------PHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred eccCchhHH----------------------------HHHHHHHHHHc----CC-------CcEEEeeeccccchHHHHH
Confidence 999986321 11122222221 11 1356789999999999888
Q ss_pred HHHH
Q 016253 376 LVDE 379 (392)
Q Consensus 376 ~v~~ 379 (392)
.++.
T Consensus 361 ~lr~ 364 (366)
T KOG1489|consen 361 GLRE 364 (366)
T ss_pred HHhh
Confidence 7764
No 290
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.06 E-value=0.004 Score=52.92 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=17.6
Q ss_pred eEEeccCCCchhHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~ 68 (392)
|++.|++||||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999985
No 291
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.04 E-value=0.058 Score=54.66 Aligned_cols=134 Identities=17% Similarity=0.141 Sum_probs=79.8
Q ss_pred ccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHH
Q 016253 198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277 (392)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f 277 (392)
-|.-|+=...+.+ ..+++.+.|.||.|+-.|----..-..=+++|+++||-++ .+ |-...=.+
T Consensus 51 ERGITILaKnTav------~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-------Gp----MPQTrFVl 113 (603)
T COG1217 51 ERGITILAKNTAV------NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-------GP----MPQTRFVL 113 (603)
T ss_pred hcCcEEEecccee------ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-------CC----CCchhhhH
Confidence 3455554444555 7788999999999997765555555667999999999642 11 11112222
Q ss_pred HHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcce
Q 016253 278 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF 357 (392)
Q Consensus 278 ~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~ 357 (392)
++.+.. +.+-|++.||+|...++. +++.+-....|.++.. +...-.+
T Consensus 114 kKAl~~----gL~PIVVvNKiDrp~Arp------------------------~~Vvd~vfDLf~~L~A-----~deQLdF 160 (603)
T COG1217 114 KKALAL----GLKPIVVINKIDRPDARP------------------------DEVVDEVFDLFVELGA-----TDEQLDF 160 (603)
T ss_pred HHHHHc----CCCcEEEEeCCCCCCCCH------------------------HHHHHHHHHHHHHhCC-----ChhhCCC
Confidence 333332 345677889999876532 3333333444555421 1122346
Q ss_pred eEEEEEeeCc----------hhHHHHHHHHHHHH
Q 016253 358 KIYRTTALDP----------KLVKKTFKLVDETL 381 (392)
Q Consensus 358 ~~~~TsA~d~----------~nI~~vF~~v~~~I 381 (392)
.+.+.||.+| .++.-+|+.+.+.+
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 6777888765 35666777766654
No 292
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.025 Score=56.45 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=82.6
Q ss_pred eccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHH
Q 016253 197 YARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 276 (392)
Q Consensus 197 ~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~ 276 (392)
|-|..|+-+....| +.....+.|.|+.|++-|-+..+.=...+|+.|+|+|.+.- ++-.--.......|..-+
T Consensus 67 RerGvTi~~~~~~f------et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~L 139 (428)
T COG5256 67 RERGVTIDVAHSKF------ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFL 139 (428)
T ss_pred HhcceEEEEEEEEe------ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-ccccccccCCchhHHHHH
Confidence 45678888888888 77778999999999999999888888999999999997521 100000011112222222
Q ss_pred HHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 016253 277 FDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV 356 (392)
Q Consensus 277 f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~ 356 (392)
-.. +.--.+|++.||+|+.+ | ..+.+++..+-+.. +.+.+ .- ....
T Consensus 140 a~t------lGi~~lIVavNKMD~v~----------------w-----de~rf~ei~~~v~~-l~k~~----G~--~~~~ 185 (428)
T COG5256 140 ART------LGIKQLIVAVNKMDLVS----------------W-----DEERFEEIVSEVSK-LLKMV----GY--NPKD 185 (428)
T ss_pred HHh------cCCceEEEEEEcccccc----------------c-----CHHHHHHHHHHHHH-HHHHc----CC--CccC
Confidence 211 12346899999999853 1 11233343333333 22211 10 1224
Q ss_pred eeEEEEEeeCchhHHH
Q 016253 357 FKIYRTTALDPKLVKK 372 (392)
Q Consensus 357 ~~~~~TsA~d~~nI~~ 372 (392)
+.+.-+||..|.|+.+
T Consensus 186 v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 186 VPFIPISGFKGDNLTK 201 (428)
T ss_pred CeEEecccccCCcccc
Confidence 6677899999999864
No 293
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.90 E-value=0.0046 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.++|++|||||||++.+-.+-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68999999999999999996554
No 294
>PRK00007 elongation factor G; Reviewed
Probab=95.85 E-value=0.014 Score=63.28 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=50.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++..+.+.||.|+..+-.-...-.+.++++|+|+|.++ . -.......+..+... +.|+++|.|
T Consensus 71 ~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~-------g----~~~qt~~~~~~~~~~----~~p~iv~vN 135 (693)
T PRK00007 71 FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG-------G----VEPQSETVWRQADKY----KVPRIAFVN 135 (693)
T ss_pred EECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC-------C----cchhhHHHHHHHHHc----CCCEEEEEE
Confidence 5567789999999987665544555678899999999631 1 112334455555432 578899999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|+.++
T Consensus 136 K~D~~~~ 142 (693)
T PRK00007 136 KMDRTGA 142 (693)
T ss_pred CCCCCCC
Confidence 9999754
No 295
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.82 E-value=0.0056 Score=52.93 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=19.2
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+|++++|.+++|||||++++.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~ 21 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFV 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999863
No 296
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.80 E-value=0.0061 Score=50.05 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=37.4
Q ss_pred ccceeEEecCCcccc--cc-------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 220 GEVYRLFDVGGQRNE--RR-------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~--r~-------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
+..+.++||.|-... .. ......+.+++++||+|.+. ... .....+++.+ + .+.|
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~--------~~~---~~~~~~~~~l-~----~~~~ 109 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN--------PIT---EDDKNILREL-K----NKKP 109 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS--------HSH---HHHHHHHHHH-H----TTSE
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC--------CCC---HHHHHHHHHH-h----cCCC
Confidence 345679999996432 11 12233478999999999642 001 1223333444 2 4689
Q ss_pred EEEEeeC
Q 016253 291 FMLFLNK 297 (392)
Q Consensus 291 iiL~~NK 297 (392)
+++++||
T Consensus 110 ~i~v~NK 116 (116)
T PF01926_consen 110 IILVLNK 116 (116)
T ss_dssp EEEEEES
T ss_pred EEEEEcC
Confidence 9999998
No 297
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.79 E-value=0.0056 Score=52.49 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.3
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||+++|.+++|||||++++.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999998874
No 298
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.78 E-value=0.032 Score=56.45 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=42.6
Q ss_pred ccccceeEEecCCcccc---------ccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 218 KSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~---------r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
..+..|.+.||||-+.. +.+...-.+.|++||||+|.-+ ....-++ ...+-+ . ..+
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~---------Git~~D~--~ia~~L-r---~~~ 112 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE---------GITPADE--EIAKIL-R---RSK 112 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC---------CCCHHHH--HHHHHH-H---hcC
Confidence 34456899999997632 2233445778999999999621 1111111 111112 1 125
Q ss_pred ceEEEEeeCCCCc
Q 016253 289 TSFMLFLNKFDIF 301 (392)
Q Consensus 289 ~~iiL~~NK~Dl~ 301 (392)
.|++|+.||+|-.
T Consensus 113 kpviLvvNK~D~~ 125 (444)
T COG1160 113 KPVILVVNKIDNL 125 (444)
T ss_pred CCEEEEEEcccCc
Confidence 8999999999975
No 299
>PTZ00416 elongation factor 2; Provisional
Probab=95.68 E-value=0.016 Score=64.17 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=51.3
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.++..+.+.||.|+..+-.--....+.++++|+|+|.++ .. .......|+.+... +.|+++|.||
T Consensus 89 ~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~---------g~--~~~t~~~~~~~~~~----~~p~iv~iNK 153 (836)
T PTZ00416 89 KQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE---------GV--CVQTETVLRQALQE----RIRPVLFINK 153 (836)
T ss_pred CCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC---------Cc--CccHHHHHHHHHHc----CCCEEEEEEC
Confidence 345679999999998877777777899999999999642 11 11233456555542 5799999999
Q ss_pred CCCcc
Q 016253 298 FDIFE 302 (392)
Q Consensus 298 ~Dl~~ 302 (392)
+|+.-
T Consensus 154 ~D~~~ 158 (836)
T PTZ00416 154 VDRAI 158 (836)
T ss_pred hhhhh
Confidence 99973
No 300
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.68 E-value=0.04 Score=50.26 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=21.9
Q ss_pred eeEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 357 FKIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 357 ~~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
..+++|||++|+||+++|+.+.+..+
T Consensus 171 ~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 171 KPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44679999999999999999886543
No 301
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.62 E-value=0.007 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=20.9
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
.+..||+++|.++||||||++++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 346799999999999999999863
No 302
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.61 E-value=0.035 Score=47.44 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=28.6
Q ss_pred ccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcc
Q 016253 242 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 242 f~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
.++++.+++|+|..+-. ...-.+...++... ..+.|+++++||+|+..
T Consensus 9 i~~aD~vl~ViD~~~p~--------~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 9 VERSDIVVQIVDARNPL--------LFRPPDLERYVKEV-----DPRKKNILLLNKADLLT 56 (141)
T ss_pred HhhCCEEEEEEEccCCc--------ccCCHHHHHHHHhc-----cCCCcEEEEEechhcCC
Confidence 56899999999975311 11101111222211 14679999999999853
No 303
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.58 E-value=0.028 Score=49.06 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.3
Q ss_pred eEEeccCCCchhHHHHHHHHh
Q 016253 50 LLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~ 70 (392)
|+|+|++||||||+++.+.-.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998543
No 304
>COG2262 HflX GTPases [General function prediction only]
Probab=95.47 E-value=0.067 Score=53.43 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=68.0
Q ss_pred ccceeEEecCCccccccch-hcccc-------ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceE
Q 016253 220 GEVYRLFDVGGQRNERRKW-IHLFE-------GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 291 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w-~~yf~-------~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~i 291 (392)
+-.+-+-||-|==+--+-| ..-|+ .+|.++.|+|.|+ ..-...++.+.+.+.++- ..++|+
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSd-------p~~~~~~~~v~~vL~el~----~~~~p~ 307 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASD-------PEILEKLEAVEDVLAEIG----ADEIPI 307 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCC-------hhHHHHHHHHHHHHHHcC----CCCCCE
Confidence 4567788998843222222 22233 5899999999974 233445566666666662 335899
Q ss_pred EEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHH
Q 016253 292 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 371 (392)
Q Consensus 292 iL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~ 371 (392)
|+++||+|+....... + .+ .. . . + ...++||+++.+++
T Consensus 308 i~v~NKiD~~~~~~~~-~-------------------------~~----~~------~---~--~-~~v~iSA~~~~gl~ 345 (411)
T COG2262 308 ILVLNKIDLLEDEEIL-A-------------------------EL----ER------G---S--P-NPVFISAKTGEGLD 345 (411)
T ss_pred EEEEecccccCchhhh-h-------------------------hh----hh------c---C--C-CeEEEEeccCcCHH
Confidence 9999999976432100 0 00 00 0 0 1 23468999999999
Q ss_pred HHHHHHHHHHH
Q 016253 372 KTFKLVDETLR 382 (392)
Q Consensus 372 ~vF~~v~~~Il 382 (392)
.+.+.+.+.+-
T Consensus 346 ~L~~~i~~~l~ 356 (411)
T COG2262 346 LLRERIIELLS 356 (411)
T ss_pred HHHHHHHHHhh
Confidence 88888887765
No 305
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.44 E-value=0.07 Score=46.05 Aligned_cols=99 Identities=16% Similarity=0.256 Sum_probs=63.4
Q ss_pred EEecCCccccccchhc----cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 225 LFDVGGQRNERRKWIH----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 225 i~DvgGq~~~r~~w~~----yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
+.||.|-=-+.+.+.+ .-.+|+.|++|.|.++-..... .. |-.+ | +.|+|=+.+|+|+
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~-------fa~~-----f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PG-------FASM-----F-NKPVIGVITKIDL 101 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----ch-------hhcc-----c-CCCEEEEEECccC
Confidence 4788887544444432 3348999999999764222110 00 1111 2 4799999999999
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
... +.+++.+.+|+.... -+. +|.+||.++++|+++.+.+.
T Consensus 102 ~~~----------------------~~~i~~a~~~L~~aG-------------~~~--if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 102 PSD----------------------DANIERAKKWLKNAG-------------VKE--IFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ccc----------------------hhhHHHHHHHHHHcC-------------CCC--eEEEECCCCcCHHHHHHHHh
Confidence 721 145677777765431 122 37899999999999988765
No 306
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.42 E-value=0.11 Score=50.77 Aligned_cols=134 Identities=17% Similarity=0.233 Sum_probs=76.9
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccc----cccchhc---cccccCEEEEEEEcccccccccchhhhhhHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRN----ERRKWIH---LFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 272 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~----~r~~w~~---yf~~~~~iifv~dls~yd~~l~e~~~~nrl~e 272 (392)
.|..|+..+ . ..-.|.+=|+.|-=. -.-+-.. +.+-+..+++|+|++..|.. +-.++
T Consensus 195 ~PnLGvV~~-~--------~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~-------dp~~~ 258 (369)
T COG0536 195 VPNLGVVRV-D--------GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGR-------DPIED 258 (369)
T ss_pred cCcccEEEe-c--------CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCC-------CHHHH
Confidence 788887765 2 123578888887521 1222233 34567899999999876541 11222
Q ss_pred HHHHHHHHHc-CCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCC
Q 016253 273 TKELFDWVLK-QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 351 (392)
Q Consensus 273 s~~~f~~i~~-~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~ 351 (392)
...+..++-. ++.+.+.|.+|++||+|+.... +..+.-.+++.+..
T Consensus 259 ~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~----------------------e~~~~~~~~l~~~~----------- 305 (369)
T COG0536 259 YQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE----------------------EELEELKKALAEAL----------- 305 (369)
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeccCCCcCH----------------------HHHHHHHHHHHHhc-----------
Confidence 2222333322 2456678999999999964220 11222222222221
Q ss_pred CCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhh
Q 016253 352 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 385 (392)
Q Consensus 352 ~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~ 385 (392)
.....++ .||.++++++.+...+.+.+-...
T Consensus 306 --~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 306 --GWEVFYL-ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred --CCCccee-eehhcccCHHHHHHHHHHHHHHhh
Confidence 1112222 999999999999998888876553
No 307
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.39 E-value=0.012 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
-|-|+|++|||||||++.+.++-.
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~ 57 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEK 57 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcC
Confidence 478999999999999999987764
No 308
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.38 E-value=0.0098 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.1
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.++|+|++||||||++|.+.-.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998444
No 309
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.36 E-value=0.16 Score=50.04 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=61.9
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+..+.|.||+|-..-... ...-+|.+++|.+. ..-..+.... ..++. ..-+++.||.
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p----------~~gd~iq~~k---~gi~E------~aDIiVVNKa 204 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLP----------GAGDELQGIK---KGIME------LADLIVINKA 204 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecC----------CchHHHHHHH---hhhhh------hhheEEeehh
Confidence 3457778899887622222 45678999998752 1111111111 11221 2237999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.... ..+.....+...+.-. .+....-...++.|||+++++|+++++.+.
T Consensus 205 Dl~~~~-----------------------~a~~~~~el~~~L~l~-----~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~ 256 (332)
T PRK09435 205 DGDNKT-----------------------AARRAAAEYRSALRLL-----RPKDPGWQPPVLTCSALEGEGIDEIWQAIE 256 (332)
T ss_pred cccchh-----------------------HHHHHHHHHHHHHhcc-----cccccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 986431 1222333333333211 000001113467899999999999999988
Q ss_pred HHH
Q 016253 379 ETL 381 (392)
Q Consensus 379 ~~I 381 (392)
+.+
T Consensus 257 ~~~ 259 (332)
T PRK09435 257 DHR 259 (332)
T ss_pred HHH
Confidence 865
No 310
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.35 E-value=0.012 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=18.2
Q ss_pred eEEeccCCCchhHHHHHHHHh
Q 016253 50 LLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~ 70 (392)
|+|-|.+||||||+++.+.-.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998533
No 311
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.32 E-value=0.13 Score=44.51 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=18.6
Q ss_pred EEEEEeeCchhHHHHHHHHHHHH
Q 016253 359 IYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 359 ~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
++.+||.++.+++.+.+.+.+..
T Consensus 62 ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 62 PFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEEEeccCCcChhhHHHHHHHHh
Confidence 56789999999999888876543
No 312
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.32 E-value=0.038 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=18.4
Q ss_pred EEEEEeeCchhHHHHHHHHHHHH
Q 016253 359 IYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 359 ~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
++.+||+++.+++.+.+.+...+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 46789999999988888877764
No 313
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.31 E-value=0.011 Score=50.99 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=17.8
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
||+++|.+++|||||++++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~ 19 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRL 19 (162)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 8999999999999999875
No 314
>PRK03839 putative kinase; Provisional
Probab=95.30 E-value=0.011 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|+|.+||||||+.+++.--+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999985443
No 315
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.29 E-value=0.011 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|++||||||+++++.-.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999999999985544
No 316
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.23 E-value=0.012 Score=51.17 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.9
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||+++|.+++|||||++++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFL 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998863
No 317
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.22 E-value=0.017 Score=62.94 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=51.7
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.++..+.+.||.|+..|..-.....+.++++|+|+|..+ .. .......|...... +.|.++|.||
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~---------g~--~~~t~~~~~~~~~~----~~~~iv~iNK 148 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE---------GV--MPQTETVLRQALRE----RVKPVLFINK 148 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC---------CC--CccHHHHHHHHHHc----CCCeEEEEEC
Confidence 346688999999999887777778899999999999642 11 12333445544332 3577999999
Q ss_pred CCCccccc
Q 016253 298 FDIFEKKV 305 (392)
Q Consensus 298 ~Dl~~~kl 305 (392)
+|+....+
T Consensus 149 ~D~~~~~~ 156 (731)
T PRK07560 149 VDRLIKEL 156 (731)
T ss_pred chhhcccc
Confidence 99875543
No 318
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.20 E-value=0.011 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.1
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
+..+||+++|.+++|||||++++.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~ 38 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Confidence 345899999999999999999973
No 319
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=95.20 E-value=0.012 Score=51.13 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=18.6
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|.++||||||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l 20 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKL 20 (159)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999986
No 320
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.20 E-value=0.013 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||++.+--.+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999884333
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.19 E-value=0.11 Score=47.59 Aligned_cols=24 Identities=4% Similarity=0.026 Sum_probs=20.8
Q ss_pred eeEEEEEeeCchhHHHHHHHHHHH
Q 016253 357 FKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 357 ~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
..++.+||+++.||+.+|+.+.+.
T Consensus 182 ~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 182 AEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998764
No 322
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.18 E-value=0.016 Score=43.44 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.1
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|.+.|++||||||+.+.+.-.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999987653
No 323
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.18 E-value=0.015 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.6
Q ss_pred eEEeccCCCchhHHHHHHHHhhc
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~ 72 (392)
++|+|++||||||+++++.-.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999865543
No 324
>PRK13949 shikimate kinase; Provisional
Probab=95.17 E-value=0.013 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|+|++||||||+.|.+--.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999985443
No 325
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=95.15 E-value=0.025 Score=62.68 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=51.4
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
++..+.++||.|+..|-.-...-.+.++++|+|+|.++ ... ..+...|+.+.. .+.|+++|.||+
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~---------Gv~--~~t~~~~~~~~~----~~~p~i~~iNK~ 160 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------GVC--VQTETVLRQALG----ERIRPVLTVNKM 160 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC---------CCc--ccHHHHHHHHHH----CCCCEEEEEECC
Confidence 46778999999999888777777899999999999642 111 123345555544 368999999999
Q ss_pred CCc
Q 016253 299 DIF 301 (392)
Q Consensus 299 Dl~ 301 (392)
|..
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 998
No 326
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.09 E-value=0.014 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.0
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|+++|++||||||+.+++.--+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999985544
No 327
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.09 E-value=0.014 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.6
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+++|.+++|||||++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l 23 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRF 23 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999997
No 328
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.08 E-value=0.014 Score=50.33 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.9
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||+++|.+++|||||+.++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999988764
No 329
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.05 E-value=0.014 Score=50.99 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=18.3
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+|++++|.+++|||||+.++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~ 20 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSY 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999775
No 330
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.05 E-value=0.015 Score=47.66 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.4
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-++|+|++||||||+++.+
T Consensus 17 ~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 17 GVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEEcCCCCCHHHHHHHh
Confidence 5799999999999999985
No 331
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.03 E-value=0.014 Score=51.15 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=17.2
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
||.|.|+.++||||+++.+.-.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998644
No 332
>PRK14530 adenylate kinase; Provisional
Probab=95.03 E-value=0.017 Score=53.11 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=20.9
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.+|+|+|++||||||+.+.+.-.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999985554
No 333
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.02 E-value=0.015 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|+|++||||||+.+++.--|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999985544
No 334
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.01 E-value=0.015 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=19.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+++|++||||||+++.+.--+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 367889999999999999885333
No 335
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.01 E-value=0.015 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.1
Q ss_pred eEEeccCCCchhHHHHHHHHh
Q 016253 50 LLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~ 70 (392)
++|.|.+||||||+.+++.-.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 578899999999999998543
No 336
>PRK08233 hypothetical protein; Provisional
Probab=94.99 E-value=0.015 Score=51.44 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=18.6
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
.-|.+.|++||||||+++++.-.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 34667799999999999998543
No 337
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=94.96 E-value=0.016 Score=50.44 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.3
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|.+++|||||+.++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~ 20 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRF 20 (161)
T ss_pred CEEEEECcCCCCHHHHHHHH
Confidence 48999999999999999776
No 338
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.96 E-value=0.016 Score=49.97 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=18.3
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
||+|+|+.|||||||+..+.
T Consensus 3 rimliG~~g~GKTTL~q~L~ 22 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALN 22 (143)
T ss_pred eEEEECCCCCCHHHHHHHHc
Confidence 79999999999999988874
No 339
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.95 E-value=0.016 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.1
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||+++|.+++|||||++++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~ 21 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYV 21 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999864
No 340
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.94 E-value=0.019 Score=52.62 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
||+|+|++||||||+.+++.--|
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999985444
No 341
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.94 E-value=0.017 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=18.9
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||+++|.+++|||||++++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~ 21 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999998763
No 342
>PRK14532 adenylate kinase; Provisional
Probab=94.93 E-value=0.016 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|+|++||||||+.+.+.--+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999985443
No 343
>PLN00223 ADP-ribosylation factor; Provisional
Probab=94.92 E-value=0.016 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.0
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
+..+||+++|.++||||||++++.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~ 38 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHc
Confidence 456899999999999999998863
No 344
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.91 E-value=0.021 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|.|.|++||||||+++.+.-+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999996655
No 345
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=94.90 E-value=0.017 Score=49.86 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.2
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+++|.+++|||||++.+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~ 22 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQF 22 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 479999999999999998875
No 346
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=94.89 E-value=0.016 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.2
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
++.+||+++|.+++||||+++++.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~ 38 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLK 38 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999999873
No 347
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.028 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
-+.|+|++|||||||+|.+--+..
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 588999999999999999966553
No 348
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.017 Score=54.17 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.7
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
=+.|||++||||||+++-+--+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998433
No 349
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=94.86 E-value=0.018 Score=50.32 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=18.5
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|.+|+|||||++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~ 20 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRY 20 (158)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 58999999999999999886
No 350
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=94.85 E-value=0.017 Score=50.99 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.7
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
.+||+++|.+++|||||++++.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~ 23 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFI 23 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4799999999999999998764
No 351
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.84 E-value=0.018 Score=51.13 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.4
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
.++|+|++||||||+++.+.-
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998854
No 352
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=94.83 E-value=0.017 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=20.1
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
..+||+++|.+++|||||++++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~ 33 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKL 33 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHH
Confidence 4589999999999999999886
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.83 E-value=0.018 Score=51.60 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=17.5
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
.+.|+|++||||||++|.+
T Consensus 23 ~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999865
No 354
>COG4639 Predicted kinase [General function prediction only]
Probab=94.83 E-value=0.017 Score=50.35 Aligned_cols=18 Identities=50% Similarity=0.584 Sum_probs=16.2
Q ss_pred eEEeccCCCchhHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 50 illlG~~~sGKST~~kq~ 67 (392)
++|.|+++|||||++|+-
T Consensus 5 vvL~G~~~sGKsT~ak~n 22 (168)
T COG4639 5 VVLRGASGSGKSTFAKEN 22 (168)
T ss_pred EEEecCCCCchhHHHHHh
Confidence 678899999999999983
No 355
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.81 E-value=0.017 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
...||+++|.+++|||||++++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~ 36 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHc
Confidence 35799999999999999998874
No 356
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.79 E-value=0.018 Score=53.45 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=26.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc-------------CCCCHHHHHHhHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ-------------TGFDEAELKSYIS 85 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~-------------~~~~~~e~~~~~~ 85 (392)
-+.|+|++||||||+++-+-.+-. ...++.++..+|.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 578999999999999999844332 1245666666664
No 357
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=94.78 E-value=0.018 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.4
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
..+||+++|.+++|||||++++.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHc
Confidence 45899999999999999998763
No 358
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.75 E-value=0.019 Score=52.39 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.9
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|+|++||||||++|++.
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 46889999999999999984
No 359
>PRK14531 adenylate kinase; Provisional
Probab=94.75 E-value=0.023 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+++|++||||||+.+.+.--|
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999985544
No 360
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=94.74 E-value=0.02 Score=50.22 Aligned_cols=20 Identities=45% Similarity=0.720 Sum_probs=18.4
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|..++|||||++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~ 20 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRH 20 (166)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999876
No 361
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.73 E-value=0.02 Score=49.91 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=18.7
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|.+++|||||++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~ 21 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRF 21 (165)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 69999999999999999975
No 362
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.72 E-value=0.019 Score=56.59 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.4
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
+.|||++||||||+++.+.-+.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999995554
No 363
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.021 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.8
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
..++|++|||||||+|.+-.+.
T Consensus 36 TAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhc
Confidence 4789999999999999985554
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.72 E-value=0.027 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.9
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|+|.|++||||||+.|.+.-..
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6788999999999999986544
No 365
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.71 E-value=0.024 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.4
Q ss_pred hcceEEeccCCCchhHHHHHHHHhh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~~ 71 (392)
..||+|+|++||||||+.+++.-.|
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999985544
No 366
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.69 E-value=0.021 Score=46.86 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.++|.|++||||||+++.+-...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 68999999999999999885444
No 367
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.69 E-value=0.02 Score=54.31 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=18.9
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
+.|||++||||||++|.+--+.
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 5789999999999999995544
No 368
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=94.67 E-value=0.02 Score=52.39 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.3
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
..+|++|+|.+|||||||++++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~ 29 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRH 29 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999653
No 369
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.67 E-value=0.02 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-|+|+|++||||||+++++.-.+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999986544
No 370
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.64 E-value=0.021 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.8
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.-|.|.|++||||||+++.+.-+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 347789999999999999986443
No 371
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=94.62 E-value=0.022 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=18.6
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
.||+++|.++||||||++++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~ 22 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFS 22 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999997753
No 372
>PLN03108 Rab family protein; Provisional
Probab=94.61 E-value=0.021 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.0
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
.+||+|+|.+++|||||++++.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~ 27 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFT 27 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999999864
No 373
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.55 E-value=0.024 Score=53.38 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.1
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
+.++|++||||||.+|.+-.+.
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6789999999999999995544
No 374
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.54 E-value=0.022 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.6
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
..+|+++|..|||||||++.+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~ 24 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV 24 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999863
No 375
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.53 E-value=0.027 Score=57.78 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHH----HhhhcceEEeccCCCchhHHHH
Q 016253 30 TAEIERRIEQETKA----EKHIQKLLLLGAGESGKSTIFK 65 (392)
Q Consensus 30 s~~Id~~l~~~~~~----~~~~~killlG~~~sGKST~~k 65 (392)
.++|+..++.-.+. ...---+.|+|++||||||+++
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 34555555443332 1122258999999999999999
No 376
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.53 E-value=0.024 Score=48.93 Aligned_cols=20 Identities=35% Similarity=0.788 Sum_probs=18.6
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
||+++|.+++|||||++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~ 20 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQ 20 (158)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 78999999999999999983
No 377
>PRK02496 adk adenylate kinase; Provisional
Probab=94.53 E-value=0.028 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.|++++|++||||||+++.+.-.|
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999986444
No 378
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.52 E-value=0.028 Score=55.37 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=26.1
Q ss_pred cceEEeccCCCchhHHHHHHHHhhcCCCCHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDEA 78 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~~~~~~~ 78 (392)
-+|+|+|++||||||+++.+.-.++..+..+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E 193 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWE 193 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEee
Confidence 3899999999999999999988877665443
No 379
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=94.51 E-value=0.023 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.5
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
++|++++|.+++|||||++++.
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~ 22 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYT 22 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3699999999999999998764
No 380
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=94.51 E-value=0.045 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.2
Q ss_pred HHHhhhcceEEeccCCCchhHHHHHH
Q 016253 42 KAEKHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 42 ~~~~~~~killlG~~~sGKST~~kq~ 67 (392)
+.....++|+|+|.+|+||||+++.+
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaL 51 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSI 51 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHH
Confidence 44566789999999999999998874
No 381
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.51 E-value=0.024 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.0
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+|++++|.+++|||||++++.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~ 21 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLV 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999864
No 382
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.49 E-value=0.024 Score=50.70 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=18.7
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|.+++|||||++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~ 20 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERY 20 (193)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999987
No 383
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=94.47 E-value=0.026 Score=48.60 Aligned_cols=20 Identities=45% Similarity=0.780 Sum_probs=18.3
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
||+++|.+++||||+++++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~ 20 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLK 20 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999873
No 384
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.46 E-value=0.026 Score=47.82 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.8
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
.|+++|.+|+|||||++++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~ 20 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIA 20 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHc
Confidence 37899999999999999873
No 385
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.46 E-value=0.025 Score=48.83 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=19.4
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+++|.+++|||||++++
T Consensus 2 ~~~i~i~G~~~~GKstli~~l 22 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNAL 22 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 468999999999999999987
No 386
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.45 E-value=0.023 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.5
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
+-|||++||||||++|.+--+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5699999999999999994433
No 387
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.45 E-value=0.025 Score=50.26 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=18.6
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|.+++|||||+.++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l 20 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVY 20 (187)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 58999999999999999886
No 388
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.45 E-value=0.026 Score=47.73 Aligned_cols=19 Identities=21% Similarity=0.620 Sum_probs=18.0
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
||+++|.+++|||||++++
T Consensus 2 kv~liG~~~vGKSsL~~~l 20 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQAL 20 (142)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 8999999999999999886
No 389
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.44 E-value=0.027 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.2
Q ss_pred eEEeccCCCchhHHHHHHHHh
Q 016253 50 LLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~ 70 (392)
|||.|++|+||||+++.+--.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999987433
No 390
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.41 E-value=0.16 Score=41.44 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=17.6
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
||+++|..++|||||++.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l 19 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINAL 19 (116)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 6899999999999998886
No 391
>PRK06762 hypothetical protein; Provisional
Probab=94.40 E-value=0.034 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-|+|.|.+||||||+++++.-.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999986555
No 392
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=94.40 E-value=0.027 Score=49.43 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.1
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
||+++|.++||||||++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~ 20 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLK 20 (169)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999863
No 393
>PTZ00369 Ras-like protein; Provisional
Probab=94.38 E-value=0.026 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.9
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
..+||+++|.+++|||||++.+.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~ 26 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFI 26 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999988653
No 394
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.38 E-value=0.031 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
||+|+|++||||||+.+.+.--|
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999885444
No 395
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.026 Score=53.30 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-+.|+|++||||||++|-+--+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998543
No 396
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=94.35 E-value=0.028 Score=47.78 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.9
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||+++|.+|+||||++..+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~ 22 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALA 22 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999863
No 397
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.33 E-value=0.03 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.7
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|.|.|++||||||+++.+.-+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 4688999999999999986554
No 398
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.33 E-value=0.043 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.1
Q ss_pred eEEeccCCCchhHHHHHHHHhhc
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~ 72 (392)
+.++|++||||||+++.+..+++
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999986653
No 399
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.33 E-value=0.027 Score=51.33 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
+++|.|++||||||++|++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred EEEEECCCCCccHHHHHHHH
Confidence 78999999999999999996
No 400
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.32 E-value=0.068 Score=46.63 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=17.4
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-+++.|.+||||||+.|.+
T Consensus 14 ~i~vmGvsGsGKSTigk~L 32 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKAL 32 (191)
T ss_pred eEEEEecCCCChhhHHHHH
Confidence 4788999999999999987
No 401
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=94.30 E-value=0.028 Score=50.12 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.5
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+++|.++||||||++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~ 23 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRL 23 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999987
No 402
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.27 E-value=0.027 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.3
Q ss_pred hhcceEEeccCCCchhHHHHHHHHhh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~~ 71 (392)
+...|.|.|++|||||||++.+.-.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999885443
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.26 E-value=0.027 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999885544
No 404
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.066 Score=57.74 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=60.1
Q ss_pred ccceeeeeEEEeeccCCCcccc-ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHH
Q 016253 198 ARVRTTGVVEIQFSPVGEHKKS-GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 276 (392)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~-~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~ 276 (392)
.|.-|+...-+.+ ..+ +..+++.||.|+=-|-.--..-.+-+|+++.|+|..+ --...+...
T Consensus 58 eRGITI~saa~s~------~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~~QTEtv 120 (697)
T COG0480 58 ERGITITSAATTL------FWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVEPQTETV 120 (697)
T ss_pred hcCCEEeeeeeEE------EEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------CeeecHHHH
Confidence 3455555544455 455 4899999999997776666666777899999998632 122244556
Q ss_pred HHHHHcCCCCCCceEEEEeeCCCCccc
Q 016253 277 FDWVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 277 f~~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
|+..... ++|.++|.||+|....
T Consensus 121 ~rqa~~~----~vp~i~fiNKmDR~~a 143 (697)
T COG0480 121 WRQADKY----GVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHhhc----CCCeEEEEECcccccc
Confidence 6666543 7999999999999765
No 405
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=94.25 E-value=0.028 Score=49.91 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.2
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
.+..+|+|+|.+++|||||++++.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 456799999999999999999874
No 406
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=94.25 E-value=0.18 Score=51.51 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=74.2
Q ss_pred eeEEEeeccCCCccccccceeEEecCCccccccchhc---------cccccCEEEEEEEc--ccccccccchhh-hhhHH
Q 016253 204 GVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH---------LFEGVSAVIFCAAI--SEYDQTLFEDEQ-KNRMM 271 (392)
Q Consensus 204 Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~---------yf~~~~~iifv~dl--s~yd~~l~e~~~-~nrl~ 271 (392)
-..+..| +.+++++.+.||+|-+..+..-.. -.+.+|.|++|+|. +.+.+ +.. .+++.
T Consensus 305 Daiea~v------~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s----d~~i~~~l~ 374 (531)
T KOG1191|consen 305 DAIEAQV------TVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES----DLKIARILE 374 (531)
T ss_pred hhheeEe------ecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc----chHHHHHHH
Confidence 3456677 778899999999998773332211 23568999999997 22211 111 11121
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCC
Q 016253 272 ETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 351 (392)
Q Consensus 272 es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~ 351 (392)
+-..-..-+ .+.+ ...+++++.||.|+... +.. ..|-|.-.+...|.
T Consensus 375 ~~~~g~~~~-~~~~-~~~~~i~~~nk~D~~s~-~~~-----~~~~~~~~~~~~~~------------------------- 421 (531)
T KOG1191|consen 375 TEGVGLVVI-VNKM-EKQRIILVANKSDLVSK-IPE-----MTKIPVVYPSAEGR------------------------- 421 (531)
T ss_pred HhccceEEE-eccc-cccceEEEechhhccCc-ccc-----ccCCceeccccccC-------------------------
Confidence 111100000 1122 45799999999998642 211 11111111111120
Q ss_pred CCCcceeEEE-EEeeCchhHHHHHHHHHHHHHHh
Q 016253 352 RVDRVFKIYR-TTALDPKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 352 ~~~r~~~~~~-TsA~d~~nI~~vF~~v~~~Il~~ 384 (392)
. .+..|. +|+++++.++.+..++.+.+...
T Consensus 422 -~--~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 422 -S--VFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred -c--ccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 0 133344 89999999999888887777644
No 407
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.23 E-value=0.026 Score=61.05 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.3
Q ss_pred cceEEeccCCCchhHHHHHHHHhhcC
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQT 73 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~~ 73 (392)
-++.++|.+||||||++|-|.-+|.+
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 37999999999999999999888854
No 408
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.23 E-value=0.029 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-|--+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999986554
No 409
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.03 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-|--++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999996554
No 410
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.20 E-value=0.03 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999996654
No 411
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.20 E-value=0.029 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|.|--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999985443
No 412
>COG0218 Predicted GTPase [General function prediction only]
Probab=94.17 E-value=0.62 Score=42.38 Aligned_cols=126 Identities=19% Similarity=0.231 Sum_probs=69.1
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCc------cccccch----hccccc---cCEEEEEEEcccccccccchhh
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQ------RNERRKW----IHLFEG---VSAVIFCAAISEYDQTLFEDEQ 266 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq------~~~r~~w----~~yf~~---~~~iifv~dls~yd~~l~e~~~ 266 (392)
..|--++...+ +. .+.+.|+.|= +..+..| .+|+++ ..+++.++|.-..-. +.+
T Consensus 58 GrTq~iNff~~------~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~----~~D 124 (200)
T COG0218 58 GRTQLINFFEV------DD---ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK----DLD 124 (200)
T ss_pred CccceeEEEEe------cC---cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc----HHH
Confidence 44555666655 22 2889999983 3445566 456653 567888888632111 111
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhc
Q 016253 267 KNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQ 346 (392)
Q Consensus 267 ~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~ 346 (392)
. +-++|+.. .++|+++++||+|-... .........+++.+..
T Consensus 125 ~----em~~~l~~-------~~i~~~vv~tK~DKi~~-----------------------~~~~k~l~~v~~~l~~---- 166 (200)
T COG0218 125 R----EMIEFLLE-------LGIPVIVVLTKADKLKK-----------------------SERNKQLNKVAEELKK---- 166 (200)
T ss_pred H----HHHHHHHH-------cCCCeEEEEEccccCCh-----------------------hHHHHHHHHHHHHhcC----
Confidence 1 22333332 26899999999995432 1122223333333221
Q ss_pred cCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 347 STAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 347 ~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
.. ..... +..+|+..+.+|+++-..+.+.+
T Consensus 167 -~~---~~~~~-~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 167 -PP---PDDQW-VVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred -CC---Cccce-EEEEecccccCHHHHHHHHHHHh
Confidence 01 11222 56788888888888777766654
No 413
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.17 E-value=0.028 Score=52.68 Aligned_cols=24 Identities=42% Similarity=0.717 Sum_probs=21.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
.++|+|++||||||++|.+--+..
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCc
Confidence 689999999999999999966653
No 414
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.14 E-value=0.031 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999986655
No 415
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.14 E-value=0.031 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999986554
No 416
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.14 E-value=0.033 Score=47.86 Aligned_cols=20 Identities=40% Similarity=0.788 Sum_probs=18.4
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
||+++|.++|||||+++++.
T Consensus 1 ki~iiG~~~~GKssli~~~~ 20 (158)
T cd00878 1 RILILGLDGAGKTTILYKLK 20 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 78999999999999998874
No 417
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=94.13 E-value=0.039 Score=54.98 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=30.6
Q ss_pred eEEeccCCCchhHHHHHHHHhhcC----------CCCHHHHHHhHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQT----------GFDEAELKSYISVI 87 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~~----------~~~~~e~~~~~~~i 87 (392)
+.|+|.+||||||++|-+--+|.| +.+.+.+..||+.+
T Consensus 352 vFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 678999999999999999777742 36777788888754
No 418
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.11 E-value=0.032 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-|--++
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999986554
No 419
>PRK06547 hypothetical protein; Provisional
Probab=94.07 E-value=0.046 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=19.9
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
.+...|+|.|++||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALA 36 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455677777999999999998874
No 420
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=94.05 E-value=0.035 Score=48.20 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=17.3
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
||+++|.+++|||||+..+
T Consensus 1 ki~vvG~~~~GKtsli~~~ 19 (165)
T cd04146 1 KIAVLGASGVGKSALVVRF 19 (165)
T ss_pred CEEEECCCCCcHHHHHHHH
Confidence 7899999999999998665
No 421
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.05 E-value=0.034 Score=49.97 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--++
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999886554
No 422
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=94.05 E-value=0.033 Score=51.09 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=18.6
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+||+++|.+++|||||++++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l 20 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRF 20 (215)
T ss_pred CEEEEECcCCCCHHHHHHHH
Confidence 58999999999999999986
No 423
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=94.03 E-value=0.49 Score=46.62 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=73.1
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
-|+-+..-.| .-..-+|-+-||.|++.|-+....=-..++.+|.++|- ...-++.+.. -..|
T Consensus 72 ITIDVAYRyF------sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA-----------R~Gvl~QTrR-Hs~I 133 (431)
T COG2895 72 ITIDVAYRYF------STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA-----------RKGVLEQTRR-HSFI 133 (431)
T ss_pred ceEEEEeeec------ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec-----------chhhHHHhHH-HHHH
Confidence 3455555555 44566899999999999877666555668899999984 2212222211 1111
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
.. .+.=..++|..||+||.+ | -++.++-|...|..+..... -+...+.
T Consensus 134 ~s--LLGIrhvvvAVNKmDLvd----------------y---------~e~~F~~I~~dy~~fa~~L~-----~~~~~~I 181 (431)
T COG2895 134 AS--LLGIRHVVVAVNKMDLVD----------------Y---------SEEVFEAIVADYLAFAAQLG-----LKDVRFI 181 (431)
T ss_pred HH--HhCCcEEEEEEeeecccc----------------c---------CHHHHHHHHHHHHHHHHHcC-----CCcceEE
Confidence 11 122246899999999853 2 13445556666666543221 1234556
Q ss_pred EEEeeCchhHH
Q 016253 361 RTTALDPKLVK 371 (392)
Q Consensus 361 ~TsA~d~~nI~ 371 (392)
-.||..|.||-
T Consensus 182 PiSAl~GDNV~ 192 (431)
T COG2895 182 PISALLGDNVV 192 (431)
T ss_pred echhccCCccc
Confidence 68999999985
No 424
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.03 E-value=0.034 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999986554
No 425
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.034 Score=50.88 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999986544
No 426
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.02 E-value=0.04 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=21.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhhcC
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQT 73 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~~ 73 (392)
-.+|+|++|||||||++.+..+...
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l~~ 49 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVLSD 49 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999999766543
No 427
>PRK14527 adenylate kinase; Provisional
Probab=94.01 E-value=0.035 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-|+++|++||||||+++++.--|
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999985444
No 428
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.035 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999996554
No 429
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.99 E-value=0.036 Score=48.56 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=18.1
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
+|+++|.++||||||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~ 20 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQ 20 (167)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999874
No 430
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.99 E-value=0.035 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999986554
No 431
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.97 E-value=0.035 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999986554
No 432
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=93.97 E-value=0.037 Score=47.54 Aligned_cols=20 Identities=45% Similarity=0.802 Sum_probs=18.0
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
+|+++|.+++|||||++++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 58999999999999998863
No 433
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.035 Score=51.65 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999986554
No 434
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.96 E-value=0.075 Score=49.41 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHh
Q 016253 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 33 Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~ 70 (392)
+-+.|..-.....+..-+.|.|++|||||||++.+.-+
T Consensus 19 l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 19 LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33334333333344567888899999999999988543
No 435
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.035 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-|--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999986554
No 436
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.96 E-value=0.035 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-|--++
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999986554
No 437
>PRK14528 adenylate kinase; Provisional
Probab=93.96 E-value=0.044 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+++|++||||||+.+.+.-.|
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999985444
No 438
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=93.94 E-value=0.035 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.1
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
...+||+++|.+|+|||||+.++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~ 33 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHH
Confidence 34589999999999999999874
No 439
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.93 E-value=0.036 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999996554
No 440
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.92 E-value=0.037 Score=49.21 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.4
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
+|+|+|..||||||+.+.+--.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999998543
No 441
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=1.5 Score=41.21 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=71.6
Q ss_pred cceeEEecCCccccccch---hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC--CCCCCceEEEEe
Q 016253 221 EVYRLFDVGGQRNERRKW---IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEKTSFMLFL 295 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w---~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~--~~~~~~~iiL~~ 295 (392)
+.|++||..||-.+-.-. ...|+++-+.|||+|. .....+++.-+...+.. ..-+++-+=+|.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDa------------Qddy~eala~L~~~v~raykvNp~in~EVfi 142 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDA------------QDDYMEALARLHMTVERAYKVNPNINFEVFI 142 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEec------------hHHHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence 679999999996553322 3458999999999984 12233444433333321 233467888999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
-|.|-+.+.-+... +. +-..++.+-+...-. .+-++.+|.||--| ..|=++|.
T Consensus 143 HKvDGLsdd~kiet--------qr-------dI~qr~~d~l~d~gl-----------e~v~vsf~LTSIyD-HSIfEAFS 195 (347)
T KOG3887|consen 143 HKVDGLSDDFKIET--------QR-------DIHQRTNDELADAGL-----------EKVQVSFYLTSIYD-HSIFEAFS 195 (347)
T ss_pred EeccCCchhhhhhh--------HH-------HHHHHhhHHHHhhhh-----------ccceEEEEEeeecc-hHHHHHHH
Confidence 99998765321100 00 001111122221111 13457888898776 56777888
Q ss_pred HHHHHHHH
Q 016253 376 LVDETLRR 383 (392)
Q Consensus 376 ~v~~~Il~ 383 (392)
.|...++.
T Consensus 196 kvVQkLip 203 (347)
T KOG3887|consen 196 KVVQKLIP 203 (347)
T ss_pred HHHHHHhh
Confidence 87776653
No 442
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.91 E-value=0.038 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|+|+|.+||||||+.|.+.-.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999986443
No 443
>PRK01889 GTPase RsgA; Reviewed
Probab=93.91 E-value=0.29 Score=48.83 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=28.8
Q ss_pred ccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcc
Q 016253 242 FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 242 f~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
-.|+|.+++|+++. .+.+..+++..+.. +.. .+++.+|++||+||..
T Consensus 110 aANvD~vliV~s~~-------p~~~~~~ldr~L~~----a~~---~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLN-------HDFNLRRIERYLAL----AWE---SGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecC-------CCCChhHHHHHHHH----HHH---cCCCEEEEEEChhcCC
Confidence 46899999999973 11222233332222 221 3577789999999964
No 444
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.91 E-value=0.036 Score=50.88 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=34.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc-------------CCCCHHHHHHhHHHHHHHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ-------------TGFDEAELKSYISVIHANVYQTIKV 97 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~-------------~~~~~~e~~~~~~~i~~n~~~~~~~ 97 (392)
-+.|||++|+||||++|.+---.. ..|...|+...|.+..+|.--++-.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 367899999999999999832211 2377888877777777766544443
No 445
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.91 E-value=0.037 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999986554
No 446
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=93.91 E-value=0.038 Score=48.54 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=18.0
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+|++++|.+|+|||||++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~ 20 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSY 20 (173)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999998764
No 447
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.90 E-value=0.036 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.8
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
++||+++|.+++|||||++++.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~ 23 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFT 23 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999863
No 448
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.90 E-value=0.037 Score=50.49 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-|--+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999986554
No 449
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.87 E-value=0.037 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999986554
No 450
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.87 E-value=0.037 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999885444
No 451
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=93.86 E-value=0.039 Score=48.64 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=18.5
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
||+++|.+++|||||++++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~ 21 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFC 21 (170)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999999863
No 452
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.85 E-value=0.037 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-|--++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999886554
No 453
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.14 Score=51.72 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=54.8
Q ss_pred EEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC
Q 016253 206 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (392)
Q Consensus 206 ~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~ 285 (392)
+..+| ++.+..+.+.||.|++-|.-=.-.-.--|++++.|+|.. ...+ ...+++| ++|.
T Consensus 72 SVMqF------~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA---------KGiE--~qT~KLf-eVcr--- 130 (528)
T COG4108 72 SVMQF------DYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA---------KGIE--PQTLKLF-EVCR--- 130 (528)
T ss_pred eEEEe------ccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecc---------cCcc--HHHHHHH-HHHh---
Confidence 45677 788899999999999876554433345689999999963 1111 1345555 4554
Q ss_pred CCCceEEEEeeCCCCccc
Q 016253 286 FEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 286 ~~~~~iiL~~NK~Dl~~~ 303 (392)
+.++||+-|.||.|....
T Consensus 131 lR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 131 LRDIPIFTFINKLDREGR 148 (528)
T ss_pred hcCCceEEEeeccccccC
Confidence 468999999999998653
No 454
>PF05729 NACHT: NACHT domain
Probab=93.84 E-value=0.04 Score=47.47 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=16.2
Q ss_pred eEEeccCCCchhHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 50 illlG~~~sGKST~~kq~ 67 (392)
++|.|.+|+||||+++.+
T Consensus 3 l~I~G~~G~GKStll~~~ 20 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKL 20 (166)
T ss_pred EEEECCCCCChHHHHHHH
Confidence 678899999999999875
No 455
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.039 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999986554
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.83 E-value=0.04 Score=50.43 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=18.0
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
.-++|.|++||||||+++++.
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 357788999999999999874
No 457
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.83 E-value=0.039 Score=49.19 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||++-+--+.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999986554
No 458
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.04 Score=49.06 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999985443
No 459
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.81 E-value=0.04 Score=49.02 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|.+--+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999986554
No 460
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.80 E-value=0.039 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999985554
No 461
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.79 E-value=0.039 Score=51.12 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-|--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999986554
No 462
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.79 E-value=0.061 Score=50.23 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=18.6
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
+.++|++||||||++|.+--+.
T Consensus 37 ~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 37 LAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred EEEECCCCcCHHHHHHHHhccC
Confidence 5688999999999999995444
No 463
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.04 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-|--++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999986655
No 464
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.79 E-value=0.04 Score=50.04 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--++
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999996655
No 465
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.78 E-value=0.042 Score=48.31 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||++-+--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999985444
No 466
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.78 E-value=0.04 Score=51.43 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.+.|+|++|||||||+|-+--+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998655
No 467
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.041 Score=49.68 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
.+.|+|++||||||++|-+--
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999998864
No 468
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.77 E-value=0.051 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.0
Q ss_pred eEEeccCCCchhHHHHHHHHhhc
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~ 72 (392)
|.|-|++|||||||++++.-...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46779999999999999865553
No 469
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.76 E-value=0.041 Score=49.15 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++++|.+||||||+++.+--+.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999985444
No 470
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.042 Score=48.69 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999885544
No 471
>PRK14529 adenylate kinase; Provisional
Probab=93.76 E-value=0.05 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|+|++||||||+.+.+.-.|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999986555
No 472
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.04 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-|--++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999996554
No 473
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.72 E-value=0.041 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|.|--++
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999996554
No 474
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.72 E-value=0.043 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=20.0
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|.+||||||+.+.+.-..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 368899999999999999885443
No 475
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.72 E-value=0.085 Score=43.71 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.0
Q ss_pred hcceEEeccCCCchhHHHHHHHHh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~ 70 (392)
..-+++.|++|+||||+++.+.-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998543
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.71 E-value=0.043 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||+++-+--+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999985544
No 477
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.70 E-value=0.042 Score=49.95 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.4
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
.++|.|++||||||++|++-
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999975
No 478
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=93.70 E-value=0.043 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
.+||+++|.+++|||+|+.++.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~ 24 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYT 24 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999998863
No 479
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.69 E-value=0.033 Score=57.03 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.5
Q ss_pred eEEeccCCCchhHHHHHHHHhhc
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~ 72 (392)
+-++|++||||||+.|.+--+|.
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~ 387 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWP 387 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccc
Confidence 67999999999999999977774
No 480
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.68 E-value=0.042 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--+.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999986554
No 481
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.67 E-value=0.042 Score=50.65 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999986554
No 482
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.66 E-value=0.042 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.4
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|++.|.+||||||+.+++.--+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 5677999999999999985544
No 483
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.66 E-value=0.043 Score=49.77 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||++-+--++
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999886554
No 484
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.65 E-value=0.042 Score=57.56 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.2
Q ss_pred cceEEeccCCCchhHHHHHHHHhhc
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~ 72 (392)
-|+.|+|++||||||++|.+--+|.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999977774
No 485
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.044 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.501 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999996554
No 486
>PRK00625 shikimate kinase; Provisional
Probab=93.60 E-value=0.046 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.8
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
.|+|+|.+||||||+.|++.-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999843
No 487
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.60 E-value=0.046 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.0
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|++.|.+||||||+++++.-.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999986443
No 488
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.044 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999986554
No 489
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.60 E-value=0.044 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=20.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
.+.|+|++|||||||+|.+--+..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999866553
No 490
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.59 E-value=0.047 Score=49.32 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=16.9
Q ss_pred eEEeccCCCchhHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~ 68 (392)
+-|.|++|||||||+|.+-
T Consensus 31 ~fl~GpSGAGKSTllkLi~ 49 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIY 49 (223)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999999873
No 491
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.59 E-value=0.047 Score=47.29 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.8
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
+++.|.+||||||+++.+.-..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999985543
No 492
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.58 E-value=0.046 Score=48.84 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999986544
No 493
>PRK13695 putative NTPase; Provisional
Probab=93.58 E-value=0.047 Score=48.37 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.0
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
.|++|.|.+||||||+++.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999975
No 494
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.58 E-value=0.046 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
-.+.|+|++|||||||+|.+--++
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999986554
No 495
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=93.57 E-value=0.046 Score=49.53 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.5
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||.++|.+|+||||+++.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALR 22 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999974
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.57 E-value=0.047 Score=49.30 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=17.1
Q ss_pred eEEeccCCCchhHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~ 68 (392)
|+|+|++|||||||++++.
T Consensus 7 ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999999984
No 497
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=93.55 E-value=0.047 Score=48.32 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=18.5
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
+|++++|.+++|||||++++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~ 21 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISY 21 (174)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 69999999999999999865
No 498
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.045 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.+.|+|++||||||++|-+--+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998654
No 499
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.55 E-value=0.046 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999986654
No 500
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.55 E-value=0.045 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|-+--++
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999996654
Done!